Your job contains 1 sequence.
>027059
MSHVFSFNHLHTNHTHQSFLSLPLHHHYPYLLPITSFNSATWAPKSTAAIHLRRSPTRKT
VKCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSA
DLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGS
RVIAILDRIKAEKEAAKSKNKEQFESPDLPEDERDWEGDDPDEDIIYVK
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 027059
(229 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2139529 - symbol:AT4G34730 "AT4G34730" species... 695 1.7e-68 1
UNIPROTKB|Q81WM5 - symbol:rbfA "Ribosome-binding factor A... 186 1.4e-14 1
TIGR_CMR|BA_3948 - symbol:BA_3948 "ribosome-binding facto... 186 1.4e-14 1
UNIPROTKB|Q609C1 - symbol:rbfA "Ribosome-binding factor A... 162 5.0e-12 1
TIGR_CMR|CPS_2204 - symbol:CPS_2204 "ribosome-binding fac... 160 8.2e-12 1
TIGR_CMR|CHY_1765 - symbol:CHY_1765 "ribosome-binding fac... 156 2.2e-11 1
UNIPROTKB|Q8EHL4 - symbol:rbfA "Ribosome-binding factor A... 155 2.8e-11 1
TIGR_CMR|SO_1205 - symbol:SO_1205 "ribosome-binding facto... 155 2.8e-11 1
UNIPROTKB|Q9KU79 - symbol:rbfA "Ribosome-binding factor A... 152 5.8e-11 1
TIGR_CMR|VC_0644 - symbol:VC_0644 "ribosome-binding facto... 152 5.8e-11 1
UNIPROTKB|P0A7G2 - symbol:rbfA species:83333 "Escherichia... 147 2.0e-10 1
TIGR_CMR|DET_0982 - symbol:DET_0982 "ribosome-binding fac... 145 3.2e-10 1
TIGR_CMR|GSU_1589 - symbol:GSU_1589 "ribosome-binding fac... 142 6.6e-10 1
TIGR_CMR|CBU_1431 - symbol:CBU_1431 "ribosome-binding fac... 120 1.7e-07 1
TIGR_CMR|SPO_3835 - symbol:SPO_3835 "ribosome-binding fac... 112 1.6e-06 1
TIGR_CMR|APH_0447 - symbol:APH_0447 "ribosome-binding fac... 106 7.8e-06 1
TIGR_CMR|ECH_0564 - symbol:ECH_0564 "ribosome-binding fac... 94 0.00018 1
>TAIR|locus:2139529 [details] [associations]
symbol:AT4G34730 "AT4G34730" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0006364 "rRNA
processing" evidence=IEA;ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0010228 "vegetative to reproductive
phase transition of meristem" evidence=RCA] [GO:0016226
"iron-sulfur cluster assembly" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0048481 "ovule development" evidence=RCA] InterPro:IPR000238
InterPro:IPR020053 Pfam:PF02033 ProDom:PD007327 PROSITE:PS01319
GO:GO:0009507 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161586
EMBL:AL023094 GO:GO:0006364 UniGene:At.47534 HOGENOM:HOG000218325
Gene3D:3.30.300.20 InterPro:IPR015946 EMBL:BT002011 EMBL:BT006250
IPI:IPI00536642 PIR:T05293 RefSeq:NP_195199.2 UniGene:At.45958
ProteinModelPortal:O65693 SMR:O65693 STRING:O65693 PaxDb:O65693
PRIDE:O65693 EnsemblPlants:AT4G34730.1 GeneID:829625
KEGG:ath:AT4G34730 TAIR:At4g34730 eggNOG:COG0858 InParanoid:O65693
KO:K02834 OMA:QYAVLPE PhylomeDB:O65693 ProtClustDB:CLSN2680264
Genevestigator:O65693 GermOnline:AT4G34730 InterPro:IPR023799
SUPFAM:SSF89919 TIGRFAMs:TIGR00082 Uniprot:O65693
Length = 215
Score = 695 (249.7 bits), Expect = 1.7e-68, P = 1.7e-68
Identities = 152/223 (68%), Positives = 169/223 (75%)
Query: 8 NHLHTNHTHQSFLSXXXXXXXXXXXXITSFNSATWAPKSTAAIHLRRS-PTRKTVKCMAN 66
N LHTN +H FL ++S A P+S A ++LR + R+TV+CMAN
Sbjct: 3 NLLHTNQSHFFFLHHPPIYT------VSSKTQAFHFPQSMAPVNLRTNLSVRRTVRCMAN 56
Query: 67 PRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVK 126
PRRVKMVAKQI RELSDMLLTD VLQ AVLPEAALGADRYLSSLTTISDVEVS DLQVVK
Sbjct: 57 PRRVKMVAKQIMRELSDMLLTDTVLQHAVLPEAALGADRYLSSLTTISDVEVSNDLQVVK 116
Query: 127 VYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
VYVSVFGDDRGK+VAIAGLKSKAKYVRS+LG+RMKLRLTPE+RFIEDE+ ERGSRVIAIL
Sbjct: 117 VYVSVFGDDRGKDVAIAGLKSKAKYVRSELGKRMKLRLTPEVRFIEDEAMERGSRVIAIL 176
Query: 187 DRIXXXXXXXXXXXXXQFESPDLPEDERDWEGDDPDEDIIYVK 229
D+I E D ED++DWE DDPDEDIIYVK
Sbjct: 177 DKIKAEKGSGEGKT----EPSDSTEDDQDWEVDDPDEDIIYVK 215
>UNIPROTKB|Q81WM5 [details] [associations]
symbol:rbfA "Ribosome-binding factor A" species:1392
"Bacillus anthracis" [GO:0003674 "molecular_function" evidence=ND]
HAMAP:MF_00003 InterPro:IPR000238 InterPro:IPR020053 Pfam:PF02033
ProDom:PD007327 PROSITE:PS01319 GO:GO:0005737 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006364
HOGENOM:HOG000218325 Gene3D:3.30.300.20 InterPro:IPR015946
eggNOG:COG0858 KO:K02834 InterPro:IPR023799 SUPFAM:SSF89919
TIGRFAMs:TIGR00082 RefSeq:NP_846191.1 RefSeq:YP_020587.1
RefSeq:YP_029913.1 ProteinModelPortal:Q81WM5 DNASU:1087561
EnsemblBacteria:EBBACT00000009260 EnsemblBacteria:EBBACT00000014176
EnsemblBacteria:EBBACT00000021191 GeneID:1087561 GeneID:2815279
GeneID:2851826 KEGG:ban:BA_3948 KEGG:bar:GBAA_3948 KEGG:bat:BAS3662
OMA:TRVGEQM ProtClustDB:PRK00521
BioCyc:BANT260799:GJAJ-3720-MONOMER
BioCyc:BANT261594:GJ7F-3836-MONOMER Uniprot:Q81WM5
Length = 118
Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 47/122 (38%), Positives = 74/122 (60%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R V +Q+++EL D +++ K+ + +G T++DV+VS DLQ+ VY
Sbjct: 4 RANRVGEQMKKELGD-IISRKI------KDPRVG-------FVTVTDVQVSRDLQIATVY 49
Query: 129 VSVFGDDRGKEVAIAGLKSKAK-YVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
+SV GD+ KE + GL +KAK ++RS++G+R++LR TPEI F DES G R+ +L
Sbjct: 50 ISVLGDEEQKENTLKGL-AKAKGFIRSEIGQRIRLRKTPEISFEFDESIGYGHRIDTLLH 108
Query: 188 RI 189
I
Sbjct: 109 EI 110
>TIGR_CMR|BA_3948 [details] [associations]
symbol:BA_3948 "ribosome-binding factor A" species:198094
"Bacillus anthracis str. Ames" [GO:0003674 "molecular_function"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00003 InterPro:IPR000238 InterPro:IPR020053 Pfam:PF02033
ProDom:PD007327 PROSITE:PS01319 GO:GO:0005737 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006364
HOGENOM:HOG000218325 Gene3D:3.30.300.20 InterPro:IPR015946
eggNOG:COG0858 KO:K02834 InterPro:IPR023799 SUPFAM:SSF89919
TIGRFAMs:TIGR00082 RefSeq:NP_846191.1 RefSeq:YP_020587.1
RefSeq:YP_029913.1 ProteinModelPortal:Q81WM5 DNASU:1087561
EnsemblBacteria:EBBACT00000009260 EnsemblBacteria:EBBACT00000014176
EnsemblBacteria:EBBACT00000021191 GeneID:1087561 GeneID:2815279
GeneID:2851826 KEGG:ban:BA_3948 KEGG:bar:GBAA_3948 KEGG:bat:BAS3662
OMA:TRVGEQM ProtClustDB:PRK00521
BioCyc:BANT260799:GJAJ-3720-MONOMER
BioCyc:BANT261594:GJ7F-3836-MONOMER Uniprot:Q81WM5
Length = 118
Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 47/122 (38%), Positives = 74/122 (60%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R V +Q+++EL D +++ K+ + +G T++DV+VS DLQ+ VY
Sbjct: 4 RANRVGEQMKKELGD-IISRKI------KDPRVG-------FVTVTDVQVSRDLQIATVY 49
Query: 129 VSVFGDDRGKEVAIAGLKSKAK-YVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
+SV GD+ KE + GL +KAK ++RS++G+R++LR TPEI F DES G R+ +L
Sbjct: 50 ISVLGDEEQKENTLKGL-AKAKGFIRSEIGQRIRLRKTPEISFEFDESIGYGHRIDTLLH 108
Query: 188 RI 189
I
Sbjct: 109 EI 110
>UNIPROTKB|Q609C1 [details] [associations]
symbol:rbfA "Ribosome-binding factor A" species:243233
"Methylococcus capsulatus str. Bath" [GO:0003674
"molecular_function" evidence=ND] HAMAP:MF_00003 InterPro:IPR000238
InterPro:IPR020053 Pfam:PF02033 ProDom:PD007327 PROSITE:PS01319
GO:GO:0005737 EMBL:AE017282 GenomeReviews:AE017282_GR GO:GO:0006364
HOGENOM:HOG000218325 Gene3D:3.30.300.20 InterPro:IPR015946
eggNOG:COG0858 KO:K02834 InterPro:IPR023799 SUPFAM:SSF89919
TIGRFAMs:TIGR00082 OMA:KVFFSVL RefSeq:YP_113776.1
ProteinModelPortal:Q609C1 SMR:Q609C1 GeneID:3103616
KEGG:mca:MCA1314 PATRIC:22606466 Uniprot:Q609C1
Length = 119
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 46/118 (38%), Positives = 64/118 (54%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R V+ Q+QRE+++ L T PE LG + T+SDV+VS DL V KV+
Sbjct: 7 RSDRVSAQMQREIAEFLRTG-----IDAPE--LG-------MVTVSDVDVSRDLAVAKVF 52
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
V+ G A+ L A +R LGRRM++R+ PEIRF D+S ERG + +L
Sbjct: 53 VTFLGARLETRAAVKRLGEFAPQLRQVLGRRMRMRIIPEIRFAYDDSLERGLHMDEVL 110
>TIGR_CMR|CPS_2204 [details] [associations]
symbol:CPS_2204 "ribosome-binding factor A" species:167879
"Colwellia psychrerythraea 34H" [GO:0006396 "RNA processing"
evidence=ISS] [GO:0019843 "rRNA binding" evidence=ISS]
HAMAP:MF_00003 InterPro:IPR000238 Pfam:PF02033 ProDom:PD007327
PROSITE:PS01319 GO:GO:0005737 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0006364 HOGENOM:HOG000218325
Gene3D:3.30.300.20 InterPro:IPR015946 eggNOG:COG0858 KO:K02834
InterPro:IPR023799 SUPFAM:SSF89919 TIGRFAMs:TIGR00082 OMA:TRVGEQM
ProtClustDB:PRK00521 RefSeq:YP_268929.1 ProteinModelPortal:Q482T8
SMR:Q482T8 STRING:Q482T8 GeneID:3521040 KEGG:cps:CPS_2204
PATRIC:21467523 BioCyc:CPSY167879:GI48-2274-MONOMER Uniprot:Q482T8
Length = 142
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 39/121 (32%), Positives = 72/121 (59%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R V +QIQ+E++ +L+ + + + L S+TT+S VEV+ DL K++
Sbjct: 7 RTDRVGQQIQKEIATILMRE-------IKDPRL-------SMTTVSAVEVTRDLAYAKIF 52
Query: 129 VSVFGDDRGKEVAIAGLKSKAK-YVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
V+ F D++ + A + ++A+ Y+RS LG+R++ R+ P +RF+ D S G R+ A++D
Sbjct: 53 VTFFNDNQDEIKASLEVLAEAEGYIRSLLGKRLRARIMPHLRFVYDSSMSEGVRMSALVD 112
Query: 188 R 188
+
Sbjct: 113 Q 113
>TIGR_CMR|CHY_1765 [details] [associations]
symbol:CHY_1765 "ribosome-binding factor A" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0006396 "RNA
processing" evidence=ISS] [GO:0019843 "rRNA binding" evidence=ISS]
HAMAP:MF_00003 InterPro:IPR000238 InterPro:IPR020053 Pfam:PF02033
ProDom:PD007327 PROSITE:PS01319 GO:GO:0005737 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006364 HOGENOM:HOG000218325
Gene3D:3.30.300.20 InterPro:IPR015946 eggNOG:COG0858 KO:K02834
InterPro:IPR023799 SUPFAM:SSF89919 TIGRFAMs:TIGR00082
RefSeq:YP_360585.1 ProteinModelPortal:Q3AB99 STRING:Q3AB99
GeneID:3726719 KEGG:chy:CHY_1765 PATRIC:21276643 OMA:KVFFSVL
BioCyc:CHYD246194:GJCN-1764-MONOMER Uniprot:Q3AB99
Length = 125
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 26/76 (34%), Positives = 51/76 (67%)
Query: 112 TISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFI 171
+++ V+++ DL K+Y+SV+G + K+ + L S +++ +L R++LR+ PE+ F+
Sbjct: 37 SVTKVDLARDLSQAKIYISVYGSEEDKKNSFIALNSAKGFIKGELASRVRLRIMPELYFV 96
Query: 172 EDESFERGSRVIAILD 187
ED S E G+R++ IL+
Sbjct: 97 EDPSIEYGARIMEILE 112
>UNIPROTKB|Q8EHL4 [details] [associations]
symbol:rbfA "Ribosome-binding factor A" species:211586
"Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
evidence=ND] HAMAP:MF_00003 InterPro:IPR000238 InterPro:IPR020053
Pfam:PF02033 ProDom:PD007327 PROSITE:PS01319 GO:GO:0005737
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0006364
HOGENOM:HOG000218325 Gene3D:3.30.300.20 InterPro:IPR015946
eggNOG:COG0858 KO:K02834 InterPro:IPR023799 SUPFAM:SSF89919
TIGRFAMs:TIGR00082 OMA:TRVGEQM ProtClustDB:PRK00521
RefSeq:NP_716830.1 ProteinModelPortal:Q8EHL4 SMR:Q8EHL4
GeneID:1169033 KEGG:son:SO_1205 PATRIC:23522068 Uniprot:Q8EHL4
Length = 147
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 47/156 (30%), Positives = 77/156 (49%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + +Q+Q+EL+ +L D + + +G T++DV+VS DL KV+
Sbjct: 7 RTRRIGQQLQQELAVVLQRD-------MKDPRIG-------FVTVNDVDVSRDLSYAKVF 52
Query: 129 VSVFGDDRGK-EVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
V+ F +D+ + + L + A Y+R+ + RMKLR+ PEIRF+ D S G R+ ++
Sbjct: 53 VTFFEEDKDVVQEKLNALIAAAPYIRTLVAGRMKLRVMPEIRFVYDSSLVEGMRMSNLVS 112
Query: 188 RIXXXXXXXXXXXXXQFESPDLPEDERDWEGDDPDE 223
++ QF S D E D E D E
Sbjct: 113 QVINSDKAKQQ----QFGSVDDDVIENDIEESDDTE 144
>TIGR_CMR|SO_1205 [details] [associations]
symbol:SO_1205 "ribosome-binding factor A" species:211586
"Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00003 InterPro:IPR000238 InterPro:IPR020053 Pfam:PF02033
ProDom:PD007327 PROSITE:PS01319 GO:GO:0005737 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0006364 HOGENOM:HOG000218325
Gene3D:3.30.300.20 InterPro:IPR015946 eggNOG:COG0858 KO:K02834
InterPro:IPR023799 SUPFAM:SSF89919 TIGRFAMs:TIGR00082 OMA:TRVGEQM
ProtClustDB:PRK00521 RefSeq:NP_716830.1 ProteinModelPortal:Q8EHL4
SMR:Q8EHL4 GeneID:1169033 KEGG:son:SO_1205 PATRIC:23522068
Uniprot:Q8EHL4
Length = 147
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 47/156 (30%), Positives = 77/156 (49%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + +Q+Q+EL+ +L D + + +G T++DV+VS DL KV+
Sbjct: 7 RTRRIGQQLQQELAVVLQRD-------MKDPRIG-------FVTVNDVDVSRDLSYAKVF 52
Query: 129 VSVFGDDRGK-EVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
V+ F +D+ + + L + A Y+R+ + RMKLR+ PEIRF+ D S G R+ ++
Sbjct: 53 VTFFEEDKDVVQEKLNALIAAAPYIRTLVAGRMKLRVMPEIRFVYDSSLVEGMRMSNLVS 112
Query: 188 RIXXXXXXXXXXXXXQFESPDLPEDERDWEGDDPDE 223
++ QF S D E D E D E
Sbjct: 113 QVINSDKAKQQ----QFGSVDDDVIENDIEESDDTE 144
>UNIPROTKB|Q9KU79 [details] [associations]
symbol:rbfA "Ribosome-binding factor A" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003674
"molecular_function" evidence=ND] [GO:0006396 "RNA processing"
evidence=ISS] HAMAP:MF_00003 InterPro:IPR000238 InterPro:IPR020053
Pfam:PF02033 ProDom:PD007327 PROSITE:PS01319 GO:GO:0005737
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006396 GO:GO:0006364
Gene3D:3.30.300.20 InterPro:IPR015946 eggNOG:COG0858 KO:K02834
InterPro:IPR023799 SUPFAM:SSF89919 TIGRFAMs:TIGR00082 OMA:TRVGEQM
ProtClustDB:PRK00521 PIR:B82298 RefSeq:NP_230293.2
ProteinModelPortal:Q9KU79 SMR:Q9KU79 DNASU:2615434 GeneID:2615434
KEGG:vch:VC0644 PATRIC:20080401 Uniprot:Q9KU79
Length = 132
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 43/122 (35%), Positives = 69/122 (56%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + VA+Q+Q+EL+ M+L +V ++ LG + TISDVEVS DL KV+
Sbjct: 7 RTQRVAQQLQKELA-MILQREVR------DSRLG-------MVTISDVEVSRDLAYAKVF 52
Query: 129 VSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
V+ ++ E +A L+ +R LG++++LRLTPEIRF D + G R+ ++
Sbjct: 53 VTFLCIGEQTPESCLAALREHEVQIRMMLGKQIRLRLTPEIRFYYDNTLVEGMRMSNLVT 112
Query: 188 RI 189
+
Sbjct: 113 EV 114
>TIGR_CMR|VC_0644 [details] [associations]
symbol:VC_0644 "ribosome-binding factor A" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00003 InterPro:IPR000238 InterPro:IPR020053 Pfam:PF02033
ProDom:PD007327 PROSITE:PS01319 GO:GO:0005737 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006396 GO:GO:0006364
Gene3D:3.30.300.20 InterPro:IPR015946 eggNOG:COG0858 KO:K02834
InterPro:IPR023799 SUPFAM:SSF89919 TIGRFAMs:TIGR00082 OMA:TRVGEQM
ProtClustDB:PRK00521 PIR:B82298 RefSeq:NP_230293.2
ProteinModelPortal:Q9KU79 SMR:Q9KU79 DNASU:2615434 GeneID:2615434
KEGG:vch:VC0644 PATRIC:20080401 Uniprot:Q9KU79
Length = 132
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 43/122 (35%), Positives = 69/122 (56%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + VA+Q+Q+EL+ M+L +V ++ LG + TISDVEVS DL KV+
Sbjct: 7 RTQRVAQQLQKELA-MILQREVR------DSRLG-------MVTISDVEVSRDLAYAKVF 52
Query: 129 VSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
V+ ++ E +A L+ +R LG++++LRLTPEIRF D + G R+ ++
Sbjct: 53 VTFLCIGEQTPESCLAALREHEVQIRMMLGKQIRLRLTPEIRFYYDNTLVEGMRMSNLVT 112
Query: 188 RI 189
+
Sbjct: 113 EV 114
>UNIPROTKB|P0A7G2 [details] [associations]
symbol:rbfA species:83333 "Escherichia coli K-12"
[GO:0030490 "maturation of SSU-rRNA" evidence=IMP] [GO:0005737
"cytoplasm" evidence=IEA] HAMAP:MF_00003 InterPro:IPR000238
InterPro:IPR020053 Pfam:PF02033 ProDom:PD007327 PROSITE:PS01319
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0030490
HOGENOM:HOG000218325 Gene3D:3.30.300.20 InterPro:IPR015946
EMBL:X13775 eggNOG:COG0858 KO:K02834 InterPro:IPR023799
SUPFAM:SSF89919 TIGRFAMs:TIGR00082 OMA:TRVGEQM ProtClustDB:PRK00521
EMBL:X13270 PIR:S01915 RefSeq:NP_417636.1 RefSeq:YP_491354.1
PDB:1KKG PDBsum:1KKG ProteinModelPortal:P0A7G2 SMR:P0A7G2
IntAct:P0A7G2 MINT:MINT-1265558 SWISS-2DPAGE:P0A7G2 PaxDb:P0A7G2
PRIDE:P0A7G2 EnsemblBacteria:EBESCT00000002223
EnsemblBacteria:EBESCT00000002224 EnsemblBacteria:EBESCT00000017462
GeneID:12933441 GeneID:947685 KEGG:ecj:Y75_p3089 KEGG:eco:b3167
PATRIC:32121752 EchoBASE:EB1165 EcoGene:EG11178
BioCyc:EcoCyc:EG11178-MONOMER BioCyc:ECOL316407:JW3136-MONOMER
EvolutionaryTrace:P0A7G2 Genevestigator:P0A7G2 Uniprot:P0A7G2
Length = 133
Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 33/82 (40%), Positives = 51/82 (62%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAK---YVRSQLGRRM 160
D L +TT+S VE+S DL KVYV+ F +D+ ++ AG+K+ + ++RS LG+ M
Sbjct: 29 DPRLGMMTTVSGVEMSRDLAYAKVYVT-FLNDKDEDAVKAGIKALQEASGFIRSLLGKAM 87
Query: 161 KLRLTPEIRFIEDESFERGSRV 182
+LR+ PE+ F D S G R+
Sbjct: 88 RLRIVPELTFFYDNSLVEGMRM 109
>TIGR_CMR|DET_0982 [details] [associations]
symbol:DET_0982 "ribosome-binding factor A" species:243164
"Dehalococcoides ethenogenes 195" [GO:0006396 "RNA processing"
evidence=ISS] [GO:0019843 "rRNA binding" evidence=ISS]
HAMAP:MF_00003 InterPro:IPR000238 InterPro:IPR020053 Pfam:PF02033
ProDom:PD007327 PROSITE:PS01319 GO:GO:0005737 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0006364 HOGENOM:HOG000218325
Gene3D:3.30.300.20 InterPro:IPR015946 eggNOG:COG0858 KO:K02834
InterPro:IPR023799 SUPFAM:SSF89919 TIGRFAMs:TIGR00082
RefSeq:YP_181705.1 ProteinModelPortal:Q3Z7U4 STRING:Q3Z7U4
GeneID:3229761 KEGG:det:DET0982 PATRIC:21609013 OMA:VFIGSIK
ProtClustDB:CLSK837194 BioCyc:DETH243164:GJNF-983-MONOMER
Uniprot:Q3Z7U4
Length = 118
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 28/86 (32%), Positives = 52/86 (60%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLR 163
D L +L ++++V+VS D++ VYVS D K+ +A L + A + R+++ ++ +R
Sbjct: 26 DPRLDTLLSVNEVDVSEDMRHATVYVSHLAGDEHKDEILAALNAAAGFFRTEIAKKTDIR 85
Query: 164 LTPEIRFIEDESFERGSRVIAILDRI 189
P FI D++ ERG R+ ++DR+
Sbjct: 86 YMPVFNFIWDDTIERGVRLNTLIDRV 111
>TIGR_CMR|GSU_1589 [details] [associations]
symbol:GSU_1589 "ribosome-binding factor A" species:243231
"Geobacter sulfurreducens PCA" [GO:0006396 "RNA processing"
evidence=ISS] [GO:0019843 "rRNA binding" evidence=ISS]
HAMAP:MF_00003 InterPro:IPR000238 InterPro:IPR020053 Pfam:PF02033
ProDom:PD007327 PROSITE:PS01319 GO:GO:0005737 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0006364 HOGENOM:HOG000218325
Gene3D:3.30.300.20 InterPro:IPR015946 eggNOG:COG0858 KO:K02834
InterPro:IPR023799 SUPFAM:SSF89919 TIGRFAMs:TIGR00082 OMA:TRVGEQM
RefSeq:NP_952640.1 ProteinModelPortal:Q74CT2 GeneID:2687364
KEGG:gsu:GSU1589 PATRIC:22026023 ProtClustDB:PRK13815
BioCyc:GSUL243231:GH27-1623-MONOMER Uniprot:Q74CT2
Length = 118
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 26/78 (33%), Positives = 48/78 (61%)
Query: 112 TISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFI 171
TI+ V+V+ D++ +Y +V GDD + GL S ++R ++G++++L+ PE+ F
Sbjct: 33 TITGVKVTDDIRQATIYYTVMGDDEARVSTARGLASATGFLRREIGKQLRLKFAPELHFK 92
Query: 172 EDESFERGSRVIAILDRI 189
D+S E G+R+ +L I
Sbjct: 93 YDQSIEYGNRIDQLLKEI 110
>TIGR_CMR|CBU_1431 [details] [associations]
symbol:CBU_1431 "ribosome-binding factor A" species:227377
"Coxiella burnetii RSA 493" [GO:0003824 "catalytic activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00003 InterPro:IPR000238 InterPro:IPR020053 Pfam:PF02033
ProDom:PD007327 PROSITE:PS01319 GO:GO:0005737 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0006364 HOGENOM:HOG000218325
Gene3D:3.30.300.20 InterPro:IPR015946 eggNOG:COG0858 KO:K02834
InterPro:IPR023799 SUPFAM:SSF89919 TIGRFAMs:TIGR00082 OMA:TRVGEQM
RefSeq:NP_820414.1 ProteinModelPortal:Q83BS2 GeneID:1209337
KEGG:cbu:CBU_1431 PATRIC:17931613 ProtClustDB:PRK13817
BioCyc:CBUR227377:GJ7S-1418-MONOMER Uniprot:Q83BS2
Length = 119
Score = 120 (47.3 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 29/85 (34%), Positives = 47/85 (55%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLR 163
D LS ++ ++ V +S DL+ KV+ S+ + KEV A L Y+R L + LR
Sbjct: 26 DSRLSKIS-LTAVSISPDLKQAKVFYSLLENQNEKEVQKA-LNKATGYLRHLLAQATVLR 83
Query: 164 LTPEIRFIEDESFERGSRVIAILDR 188
P++ F+ DES ER R+ +++R
Sbjct: 84 YVPKLEFVYDESIERAHRISLLIER 108
>TIGR_CMR|SPO_3835 [details] [associations]
symbol:SPO_3835 "ribosome-binding factor A" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0006396 "RNA processing"
evidence=ISS] [GO:0019843 "rRNA binding" evidence=ISS]
HAMAP:MF_00003 InterPro:IPR000238 InterPro:IPR020053 Pfam:PF02033
ProDom:PD007327 PROSITE:PS01319 GO:GO:0005737 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006364 Gene3D:3.30.300.20
InterPro:IPR015946 eggNOG:COG0858 KO:K02834 InterPro:IPR023799
SUPFAM:SSF89919 ProtClustDB:PRK00521 RefSeq:YP_169023.1
ProteinModelPortal:Q5LLT6 GeneID:3196286 KEGG:sil:SPO3835
PATRIC:23381173 HOGENOM:HOG000218324 OMA:LRQMKYM Uniprot:Q5LLT6
Length = 131
Score = 112 (44.5 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 23/67 (34%), Positives = 39/67 (58%)
Query: 112 TISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFI 171
T+ +V S DL++ YV G RG+E + L +R +G+++ L+ TP++RF
Sbjct: 47 TVGEVRTSPDLKIATAYVLPLGG-RGQEDVVQLLSRNKGELRRMIGKKLGLKFTPDLRFR 105
Query: 172 EDESFER 178
DE+F+R
Sbjct: 106 LDETFDR 112
>TIGR_CMR|APH_0447 [details] [associations]
symbol:APH_0447 "ribosome-binding factor A" species:212042
"Anaplasma phagocytophilum HZ" [GO:0006396 "RNA processing"
evidence=ISS] [GO:0019843 "rRNA binding" evidence=ISS]
InterPro:IPR000238 InterPro:IPR020053 Pfam:PF02033 ProDom:PD007327
PROSITE:PS01319 GO:GO:0005737 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0006364 HOGENOM:HOG000218325
Gene3D:3.30.300.20 InterPro:IPR015946 eggNOG:COG0858 KO:K02834
InterPro:IPR023799 SUPFAM:SSF89919 TIGRFAMs:TIGR00082 OMA:MIYKSES
RefSeq:YP_505050.1 ProteinModelPortal:Q2GKQ1 STRING:Q2GKQ1
GeneID:3930661 KEGG:aph:APH_0447 PATRIC:20949514
ProtClustDB:CLSK747350 BioCyc:APHA212042:GHPM-474-MONOMER
Uniprot:Q2GKQ1
Length = 118
Score = 106 (42.4 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 33/106 (31%), Positives = 55/106 (51%)
Query: 85 LLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAG 144
L VL+ A L E L LS+L ++S+V+V DL+ ++V V G + +
Sbjct: 13 LKVSSVLKKA-LSELFLREFYDLSTLISVSEVKVGEDLRNATIFVVVRGKGVDGDEIVRA 71
Query: 145 LKSKAKYVRSQLGRRMKLRLTPEIRF---IEDESFERGSRVIAILD 187
L + + VR + + +KLR P + F +E E+F R S +A+L+
Sbjct: 72 LNASSNVVRKSVFKYLKLRYVPRLHFKLDVEFENFLRISDALAVLN 117
>TIGR_CMR|ECH_0564 [details] [associations]
symbol:ECH_0564 "ribosome-binding factor A" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0006396 "RNA processing"
evidence=ISS] [GO:0019843 "rRNA binding" evidence=ISS]
InterPro:IPR000238 InterPro:IPR020053 Pfam:PF02033 ProDom:PD007327
PROSITE:PS01319 GO:GO:0005737 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006364 HOGENOM:HOG000218325
Gene3D:3.30.300.20 InterPro:IPR015946 eggNOG:COG0858 KO:K02834
InterPro:IPR023799 SUPFAM:SSF89919 TIGRFAMs:TIGR00082
RefSeq:YP_507376.1 ProteinModelPortal:Q2GGQ7 STRING:Q2GGQ7
GeneID:3927801 KEGG:ech:ECH_0564 PATRIC:20576594 OMA:MIYKSES
ProtClustDB:CLSK749144 BioCyc:ECHA205920:GJNR-566-MONOMER
Uniprot:Q2GGQ7
Length = 114
Score = 94 (38.1 bits), Expect = 0.00018, P = 0.00018
Identities = 26/80 (32%), Positives = 41/80 (51%)
Query: 108 SSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPE 167
+S TIS VEVS+D++ V+V + + KE I L + ++R + + LR P
Sbjct: 33 NSHITISKVEVSSDIRDATVFVIISQECSDKEALIKELNDSSYFIRKAIFSYVDLRYIPR 92
Query: 168 IRFIEDESFERGSRVIAILD 187
+ F D F+ RV IL+
Sbjct: 93 LYFKLDYCFDNLVRVNQILE 112
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.133 0.377 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 229 204 0.00094 111 3 11 22 0.47 32
31 0.46 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 17
No. of states in DFA: 598 (64 KB)
Total size of DFA: 155 KB (2092 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 18.76u 0.12s 18.88t Elapsed: 00:00:01
Total cpu time: 18.76u 0.12s 18.88t Elapsed: 00:00:01
Start: Thu May 9 21:31:24 2013 End: Thu May 9 21:31:25 2013