BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027059
(229 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255543903|ref|XP_002513014.1| Ribosome-binding factor A, putative [Ricinus communis]
gi|223548025|gb|EEF49517.1| Ribosome-binding factor A, putative [Ricinus communis]
Length = 221
Score = 320 bits (819), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 161/220 (73%), Positives = 182/220 (82%), Gaps = 12/220 (5%)
Query: 10 LHTNHTHQSFLSLPLHHHYPYLLPITSFNSATWAPKSTAAIHLRRSPTRKTVKCMANPRR 69
+ T+ + ++ LH+ +P W PKS A+ HLR+ P T+KCMANPRR
Sbjct: 14 VFTSQRNSPPITTILHNPFP-----------IWTPKSAASAHLRQKPFINTIKCMANPRR 62
Query: 70 VKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYV 129
VKMVAKQIQRELSDMLLTDKVLQ+A+LPEAALGAD+YLSSLTTISDVEVS DLQVVKVYV
Sbjct: 63 VKMVAKQIQRELSDMLLTDKVLQYAILPEAALGADKYLSSLTTISDVEVSTDLQVVKVYV 122
Query: 130 SVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRI 189
SVFGDDRGKEVAIAGLK+KAKYVRS+LGRRMKLRLTPEIRFIEDESFERGSRV+AILD+I
Sbjct: 123 SVFGDDRGKEVAIAGLKAKAKYVRSELGRRMKLRLTPEIRFIEDESFERGSRVLAILDKI 182
Query: 190 KAEKEAAKSKNKEQFESPDLPEDERDWEGDDPDEDIIYVK 229
KAEKE S++ E ES D P+D+RDWEGDDPDE IIYVK
Sbjct: 183 KAEKENTGSED-ELSESSDSPQDDRDWEGDDPDEGIIYVK 221
>gi|30690114|ref|NP_195199.2| ribosome-binding factor A [Arabidopsis thaliana]
gi|78099793|sp|O65693.2|RBFA_ARATH RecName: Full=Probable ribosome-binding factor A, chloroplastic;
Flags: Precursor
gi|25082957|gb|AAN72022.1| putative protein [Arabidopsis thaliana]
gi|30023650|gb|AAP13358.1| At4g34730 [Arabidopsis thaliana]
gi|332661016|gb|AEE86416.1| ribosome-binding factor A [Arabidopsis thaliana]
Length = 215
Score = 304 bits (778), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 159/223 (71%), Positives = 180/223 (80%), Gaps = 11/223 (4%)
Query: 8 NHLHTNHTHQSFLSLPLHHHYPYLLPITSFNSATWAPKSTAAIHLRRS-PTRKTVKCMAN 66
N LHTN +H FL H+P + ++S A P+S A ++LR + R+TV+CMAN
Sbjct: 3 NLLHTNQSHFFFL------HHPPIYTVSSKTQAFHFPQSMAPVNLRTNLSVRRTVRCMAN 56
Query: 67 PRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVK 126
PRRVKMVAKQI RELSDMLLTD VLQ AVLPEAALGADRYLSSLTTISDVEVS DLQVVK
Sbjct: 57 PRRVKMVAKQIMRELSDMLLTDTVLQHAVLPEAALGADRYLSSLTTISDVEVSNDLQVVK 116
Query: 127 VYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
VYVSVFGDDRGK+VAIAGLKSKAKYVRS+LG+RMKLRLTPE+RFIEDE+ ERGSRVIAIL
Sbjct: 117 VYVSVFGDDRGKDVAIAGLKSKAKYVRSELGKRMKLRLTPEVRFIEDEAMERGSRVIAIL 176
Query: 187 DRIKAEKEAAKSKNKEQFESPDLPEDERDWEGDDPDEDIIYVK 229
D+IKAEK + + K E D ED++DWE DDPDEDIIYVK
Sbjct: 177 DKIKAEKGSGEGKT----EPSDSTEDDQDWEVDDPDEDIIYVK 215
>gi|224080508|ref|XP_002306146.1| predicted protein [Populus trichocarpa]
gi|222849110|gb|EEE86657.1| predicted protein [Populus trichocarpa]
Length = 166
Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 145/166 (87%), Positives = 154/166 (92%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MANPRRVKMVAKQIQRELSDMLLTDKVLQ+AVLPEAALGAD+YLSSLTTISDVEVSADLQ
Sbjct: 1 MANPRRVKMVAKQIQRELSDMLLTDKVLQYAVLPEAALGADKYLSSLTTISDVEVSADLQ 60
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDE ERGSRVI
Sbjct: 61 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDEGLERGSRVI 120
Query: 184 AILDRIKAEKEAAKSKNKEQFESPDLPEDERDWEGDDPDEDIIYVK 229
AILDRIKAEK+ A+S+ E +S + + + DWEGDDPDEDIIYVK
Sbjct: 121 AILDRIKAEKDNAESQVDELSDSSNSIQYDEDWEGDDPDEDIIYVK 166
>gi|297798442|ref|XP_002867105.1| hypothetical protein ARALYDRAFT_353351 [Arabidopsis lyrata subsp.
lyrata]
gi|297312941|gb|EFH43364.1| hypothetical protein ARALYDRAFT_353351 [Arabidopsis lyrata subsp.
lyrata]
Length = 787
Score = 279 bits (713), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 140/167 (83%), Positives = 148/167 (88%)
Query: 63 CMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADL 122
CMANPRRVKMVAKQI RELSDMLLTD VLQ AVLPEAALGADRYLSSLTTISDVEVS DL
Sbjct: 560 CMANPRRVKMVAKQIMRELSDMLLTDTVLQHAVLPEAALGADRYLSSLTTISDVEVSNDL 619
Query: 123 QVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
QVVKVYVSVFGDDRGK+VAIAGLKSKAKYVRS+LG+RMKLRLTPE+RFIEDES ERGSRV
Sbjct: 620 QVVKVYVSVFGDDRGKDVAIAGLKSKAKYVRSELGKRMKLRLTPEVRFIEDESMERGSRV 679
Query: 183 IAILDRIKAEKEAAKSKNKEQFESPDLPEDERDWEGDDPDEDIIYVK 229
IAILD+IKAEK + N+ E DL ED +DWE DDPDEDIIYV
Sbjct: 680 IAILDKIKAEKGSGDGVNEGLPEPSDLAEDNQDWEVDDPDEDIIYVN 726
>gi|359475074|ref|XP_003631582.1| PREDICTED: probable ribosome-binding factor A, chloroplastic
isoform 2 [Vitis vinifera]
Length = 215
Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 138/160 (86%), Positives = 150/160 (93%), Gaps = 2/160 (1%)
Query: 60 TVKCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVS 119
TV+CMAN RRVKMVAKQI+RELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVS
Sbjct: 54 TVRCMANQRRVKMVAKQIRRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVS 113
Query: 120 ADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERG 179
ADLQVVKVYVSVFGD++GKEVAIAGLKSKAKYVRS+LGRRMKLRLTPEIRF+EDES ERG
Sbjct: 114 ADLQVVKVYVSVFGDEKGKEVAIAGLKSKAKYVRSELGRRMKLRLTPEIRFVEDESLERG 173
Query: 180 SRVIAILDRIKAEKEAAKSKNKEQFESPDLPEDERDWEGD 219
SRVIAILDRIK EK+ A S+++ ES DLP+D+ DWEGD
Sbjct: 174 SRVIAILDRIKNEKKMAGSQDQPS-ESSDLPQDD-DWEGD 211
>gi|3096942|emb|CAA18852.1| putative protein [Arabidopsis thaliana]
gi|7270424|emb|CAB80190.1| putative protein [Arabidopsis thaliana]
Length = 200
Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 145/203 (71%), Positives = 160/203 (78%), Gaps = 25/203 (12%)
Query: 48 AAIHLRRS-PTRKTVKCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRY 106
A ++LR + R+TV+CMANPRRVKMVAKQI RELSDMLLTD VLQ AVLPEAALGADRY
Sbjct: 2 APVNLRTNLSVRRTVRCMANPRRVKMVAKQIMRELSDMLLTDTVLQHAVLPEAALGADRY 61
Query: 107 LSSLTTISDVEVSADLQ------------VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRS 154
LSSLTTISDVEVS DLQ VVKVYVSVFGDDRGK+VAIAGLKSKAKYVRS
Sbjct: 62 LSSLTTISDVEVSNDLQVMRNPNWKLLCNVVKVYVSVFGDDRGKDVAIAGLKSKAKYVRS 121
Query: 155 QLGRRMKLRLTPEIRFIEDESFERGSR--------VIAILDRIKAEKEAAKSKNKEQFES 206
+LG+RMKLRLTPE+RFIEDE+ ERGSR VIAILD+IKAEK + + K E
Sbjct: 122 ELGKRMKLRLTPEVRFIEDEAMERGSRKLNWRLFQVIAILDKIKAEKGSGEGKT----EP 177
Query: 207 PDLPEDERDWEGDDPDEDIIYVK 229
D ED++DWE DDPDEDIIYVK
Sbjct: 178 SDSTEDDQDWEVDDPDEDIIYVK 200
>gi|225427802|ref|XP_002270280.1| PREDICTED: probable ribosome-binding factor A, chloroplastic
isoform 1 [Vitis vinifera]
Length = 223
Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 143/171 (83%), Positives = 159/171 (92%), Gaps = 2/171 (1%)
Query: 60 TVKCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVS 119
TV+CMAN RRVKMVAKQI+RELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVS
Sbjct: 54 TVRCMANQRRVKMVAKQIRRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVS 113
Query: 120 ADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERG 179
ADLQVVKVYVSVFGD++GKEVAIAGLKSKAKYVRS+LGRRMKLRLTPEIRF+EDES ERG
Sbjct: 114 ADLQVVKVYVSVFGDEKGKEVAIAGLKSKAKYVRSELGRRMKLRLTPEIRFVEDESLERG 173
Query: 180 SRVIAILDRIKAEKEAAKSKNKEQFESPDLPE-DERDWEGDDPDEDIIYVK 229
SRVIAILDRIK EK+ A S+++ ES DLP+ D+ + +GDDPDE+IIY+K
Sbjct: 174 SRVIAILDRIKNEKKMAGSQDQPS-ESSDLPQDDDWEGDGDDPDENIIYIK 223
>gi|449467253|ref|XP_004151338.1| PREDICTED: probable ribosome-binding factor A, chloroplastic-like
[Cucumis sativus]
gi|449529960|ref|XP_004171965.1| PREDICTED: probable ribosome-binding factor A, chloroplastic-like
[Cucumis sativus]
Length = 225
Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 146/225 (64%), Positives = 170/225 (75%), Gaps = 2/225 (0%)
Query: 7 FNHLHTNHTHQSFLSLPLH--HHYPYLLPITSFNSATWAPKSTAAIHLRRSPTRKTVKCM 64
HL H F PL P+ + ++P S + T++CM
Sbjct: 1 MTHLLLQQIHPQFYFSPLKFLQSSPFPSQFQASRPCVYSPTSVTLLPPPPVMRGATIRCM 60
Query: 65 ANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQV 124
AN RR+KMVAKQIQRELSDMLLTDKVLQFA+LPEA+LGAD+YLSSLTTI+DVEVSADLQV
Sbjct: 61 ANSRRIKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSADLQV 120
Query: 125 VKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIA 184
VKVYVSVFGD+RGK+VAIAGLKSKAKYVRS LG+RMKLRLTPEIRFIEDESFERGSRVIA
Sbjct: 121 VKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIA 180
Query: 185 ILDRIKAEKEAAKSKNKEQFESPDLPEDERDWEGDDPDEDIIYVK 229
ILDRIK +K+ ++ +Q E D +D+RDW+GDD DEDIIYV+
Sbjct: 181 ILDRIKDKKKDTVDEDFDQPELSDALDDDRDWKGDDADEDIIYVQ 225
>gi|357467461|ref|XP_003604015.1| hypothetical protein MTR_3g117600 [Medicago truncatula]
gi|355493063|gb|AES74266.1| hypothetical protein MTR_3g117600 [Medicago truncatula]
Length = 229
Score = 256 bits (653), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 132/199 (66%), Positives = 155/199 (77%), Gaps = 13/199 (6%)
Query: 29 PYLLPITSFNSATWAPKSTAAI----HLRRSPTRKTVKCMANPRRVKMVAKQIQRELSDM 84
P + P N+ A +T I L + +R T+KCMANPRRVKMVAKQI+RELSDM
Sbjct: 15 PSVTPCWRCNNHRTAATATVTIFQTQRLTGNASRITIKCMANPRRVKMVAKQIRRELSDM 74
Query: 85 LLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAG 144
L+TD VLQFAVLPEA+LGAD YLSS+TTI+DVE++ADLQV +VYVSVFGD+RGKEVA+AG
Sbjct: 75 LITDNVLQFAVLPEASLGADLYLSSVTTITDVEITADLQVARVYVSVFGDERGKEVAMAG 134
Query: 145 LKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRIKAEKEAAKSKNKEQF 204
LKSKAKYVR +LGRRMKLRLTPEIRF+EDESFERGSRVIAILD+IK EK + SKN EQ
Sbjct: 135 LKSKAKYVRGELGRRMKLRLTPEIRFLEDESFERGSRVIAILDKIKNEK-SETSKNMEQL 193
Query: 205 ESPDLPEDERDWEGDDPDE 223
+S GDD ++
Sbjct: 194 DSS--------VNGDDTEQ 204
>gi|357110849|ref|XP_003557228.1| PREDICTED: probable ribosome-binding factor A, chloroplastic-like
[Brachypodium distachyon]
Length = 205
Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 127/193 (65%), Positives = 158/193 (81%), Gaps = 7/193 (3%)
Query: 44 PKSTA-AIHLRRSPTR----KTVKCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPE 98
P++ A ++ +RR P+ + V+CMA RRV+MVAKQIQREL+DML D ++ AVLPE
Sbjct: 13 PRALAVSVTVRRLPSSALSLRVVRCMAKERRVRMVAKQIQRELADMLTRDPIMLRAVLPE 72
Query: 99 AALGADRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGR 158
AALGADRYLSSLTTI+DVE+S DLQV KVYVSVFGD+RGK+VA+AGLK K KYVRSQ+G+
Sbjct: 73 AALGADRYLSSLTTIADVELSNDLQVCKVYVSVFGDERGKKVAMAGLKDKTKYVRSQIGK 132
Query: 159 RMKLRLTPEIRFIEDESFERGSRVIAILDRIKAEKEAAKSKN-KEQFESPDLPEDERDWE 217
RMKLRLTPEIRFIEDES ERGSR++ ILD++K E+E + + +E E+ DL E++ DWE
Sbjct: 133 RMKLRLTPEIRFIEDESMERGSRILTILDKLKEEREKQEGNDLEEDAETSDLGEEDGDWE 192
Query: 218 GDDPD-EDIIYVK 229
GD+PD EDIIYVK
Sbjct: 193 GDEPDEEDIIYVK 205
>gi|356517875|ref|XP_003527611.1| PREDICTED: probable ribosome-binding factor A, chloroplastic-like
[Glycine max]
Length = 255
Score = 245 bits (626), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 139/230 (60%), Positives = 174/230 (75%), Gaps = 8/230 (3%)
Query: 4 VFSFNHLHTNHTHQSFLSLPLHHHYPYLLPITSFNSATWAPKSTAAIHLRRSPT----RK 59
V S + + H S P + YP + S +++ A + +LR +
Sbjct: 30 VVSESEIAMLHPAALIASCPYPYPYPGRHELPSASASATARVAVPMPNLRGKAVVGVGSR 89
Query: 60 TVKCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVS 119
++CMANPRRV+MVAKQI+RELS MLLTDKVLQ+AVLPEA+LGADRYLSSLTTI+DV+VS
Sbjct: 90 MIRCMANPRRVQMVAKQIRRELSHMLLTDKVLQYAVLPEASLGADRYLSSLTTITDVQVS 149
Query: 120 ADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERG 179
ADLQVVKVYVSVFGD+RGKEVAIAGLKSKAKYVRS+LG+R+KLRLTPEIRF+ED+SFERG
Sbjct: 150 ADLQVVKVYVSVFGDERGKEVAIAGLKSKAKYVRSELGKRIKLRLTPEIRFLEDDSFERG 209
Query: 180 SRVIAILDRIKAEKEAAKSKNKEQFESPDLPEDERDWEGDDPDEDIIYVK 229
SRVIAILD+IK + KS+ K + +S + + DW+G+DP+E IIYV+
Sbjct: 210 SRVIAILDKIKND----KSQYKAELDSSPNEDHDDDWDGEDPEEGIIYVE 255
>gi|226529836|ref|NP_001149358.1| LOC100282982 [Zea mays]
gi|195626630|gb|ACG35145.1| ribosome-binding factor A [Zea mays]
gi|413953305|gb|AFW85954.1| ribosome-binding factor A [Zea mays]
Length = 206
Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 124/172 (72%), Positives = 146/172 (84%), Gaps = 2/172 (1%)
Query: 60 TVKCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVS 119
V+CMA RRV+MVAKQIQREL+DML D VLQ AVLPEAALGADRYLSSLTTI+DVE+S
Sbjct: 35 VVRCMAKERRVRMVAKQIQRELADMLTRDPVLQRAVLPEAALGADRYLSSLTTIADVELS 94
Query: 120 ADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERG 179
DLQV KVYVSVFGD+RGK+VAI GLK+K KYVRSQ+GRRMKLRLTPEIRFIEDES ERG
Sbjct: 95 NDLQVCKVYVSVFGDERGKKVAIEGLKAKTKYVRSQIGRRMKLRLTPEIRFIEDESMERG 154
Query: 180 SRVIAILDRIKAEKEAAKSKNKEQFESPDLP-EDERDWEGDDPD-EDIIYVK 229
SR++AILD++K E+E + K+ E+ + + ED+ DW+ D+PD EDIIYVK
Sbjct: 155 SRILAILDKLKEEREQQEGKDGEEDDDSYISEEDDGDWDADEPDEEDIIYVK 206
>gi|326516090|dbj|BAJ88068.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 212
Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 124/174 (71%), Positives = 147/174 (84%), Gaps = 3/174 (1%)
Query: 59 KTVKCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEV 118
+ V+CMA RRV+MVAKQIQREL+DML D V+Q AVLPEAALGADRYLSSLTTI+DVE+
Sbjct: 39 RVVRCMAKERRVRMVAKQIQRELADMLTRDPVMQRAVLPEAALGADRYLSSLTTIADVEL 98
Query: 119 SADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFER 178
S DLQV KVYVSVFGD+RGK+VA+AGLK K KYVRSQ+G+RMKLRLTPEIRFIEDES ER
Sbjct: 99 SNDLQVCKVYVSVFGDERGKKVAMAGLKDKTKYVRSQIGKRMKLRLTPEIRFIEDESMER 158
Query: 179 GSRVIAILDRIKAEKEA-AKSKNKEQFESPDLPEDE-RDWEGDDPD-EDIIYVK 229
GSR++ ILD++K E+E + +E E+ D+ E+E DWEGD+PD EDIIYVK
Sbjct: 159 GSRILTILDKLKEEREQREGNGEEEDGEASDMVEEEDGDWEGDEPDEEDIIYVK 212
>gi|115466270|ref|NP_001056734.1| Os06g0137600 [Oryza sativa Japonica Group]
gi|55296456|dbj|BAD68652.1| ribosome-binding factor A protein-like [Oryza sativa Japonica
Group]
gi|55296997|dbj|BAD68472.1| ribosome-binding factor A protein-like [Oryza sativa Japonica
Group]
gi|113594774|dbj|BAF18648.1| Os06g0137600 [Oryza sativa Japonica Group]
gi|125553968|gb|EAY99573.1| hypothetical protein OsI_21548 [Oryza sativa Indica Group]
gi|125595983|gb|EAZ35763.1| hypothetical protein OsJ_20053 [Oryza sativa Japonica Group]
gi|215701451|dbj|BAG92875.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704652|dbj|BAG94280.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765427|dbj|BAG87124.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 209
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 132/218 (60%), Positives = 164/218 (75%), Gaps = 14/218 (6%)
Query: 15 THQSFLSLPLHHHYPYLLPITSFNSATWAPKSTAAIHLRRSPTRKTVKCMANPRRVKMVA 74
T + +S PL P L + S + P S+A+ + + V+CMA RRV+MVA
Sbjct: 3 TCRPLVSPPL----PRRLAVASPLAPARPPPSSAS-------SLRVVRCMAKERRVRMVA 51
Query: 75 KQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVFGD 134
KQIQREL+DML D VLQ AVLPEAALGAD+YLSSLTTI+DVE+S DLQV KVYVSVFGD
Sbjct: 52 KQIQRELADMLTRDPVLQRAVLPEAALGADQYLSSLTTIADVELSNDLQVCKVYVSVFGD 111
Query: 135 DRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRIK-AEK 193
+RGK+VAIAGLK+K KYVRSQ+G+RMKLRLTPEIRFIEDES ERGSR++AILD++K +
Sbjct: 112 ERGKKVAIAGLKAKTKYVRSQIGKRMKLRLTPEIRFIEDESMERGSRILAILDKLKEERE 171
Query: 194 EAAKSKNKEQFESPDLPEDER-DWEGDDPD-EDIIYVK 229
+ ++ +E E +L E+E DW+ D+PD EDIIYVK
Sbjct: 172 QQEGNEEEEDGEGANLSEEEEGDWDADEPDEEDIIYVK 209
>gi|242091890|ref|XP_002436435.1| hypothetical protein SORBIDRAFT_10g002540 [Sorghum bicolor]
gi|241914658|gb|EER87802.1| hypothetical protein SORBIDRAFT_10g002540 [Sorghum bicolor]
Length = 207
Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 120/173 (69%), Positives = 141/173 (81%), Gaps = 3/173 (1%)
Query: 60 TVKCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVS 119
V+CMA RRV+MVAKQIQREL+DML D VLQ AVLPEAALGADRYLSSLTTI+DVE+S
Sbjct: 35 VVRCMAKERRVRMVAKQIQRELADMLTRDPVLQRAVLPEAALGADRYLSSLTTIADVELS 94
Query: 120 ADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERG 179
DLQV KVYVSVFGD+RGK+VAI GLK+K KYVRSQ+G+RMKLRLTPEIRFIEDES ERG
Sbjct: 95 NDLQVCKVYVSVFGDERGKKVAIEGLKAKTKYVRSQIGKRMKLRLTPEIRFIEDESMERG 154
Query: 180 SRVIAILDRIKAEKEAAKSKNKEQ-FESPDLPEDE--RDWEGDDPDEDIIYVK 229
SR++AILD++K E+E + K+ E+ E + E+E D +EDIIYVK
Sbjct: 155 SRILAILDKLKEEREQQEGKDGEEDVEGSYISEEEDGDWDADDPDEEDIIYVK 207
>gi|297744711|emb|CBI37973.3| unnamed protein product [Vitis vinifera]
Length = 146
Score = 219 bits (558), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 122/147 (82%), Positives = 136/147 (92%), Gaps = 2/147 (1%)
Query: 84 MLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIA 143
MLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVFGD++GKEVAIA
Sbjct: 1 MLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVFGDEKGKEVAIA 60
Query: 144 GLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRIKAEKEAAKSKNKEQ 203
GLKSKAKYVRS+LGRRMKLRLTPEIRF+EDES ERGSRVIAILDRIK EK+ A S+++
Sbjct: 61 GLKSKAKYVRSELGRRMKLRLTPEIRFVEDESLERGSRVIAILDRIKNEKKMAGSQDQPS 120
Query: 204 FESPDLPE-DERDWEGDDPDEDIIYVK 229
ES DLP+ D+ + +GDDPDE+IIY+K
Sbjct: 121 -ESSDLPQDDDWEGDGDDPDENIIYIK 146
>gi|302811611|ref|XP_002987494.1| hypothetical protein SELMODRAFT_48536 [Selaginella moellendorffii]
gi|302822285|ref|XP_002992801.1| hypothetical protein SELMODRAFT_48535 [Selaginella moellendorffii]
gi|300139349|gb|EFJ06091.1| hypothetical protein SELMODRAFT_48535 [Selaginella moellendorffii]
gi|300144648|gb|EFJ11330.1| hypothetical protein SELMODRAFT_48536 [Selaginella moellendorffii]
Length = 162
Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 102/147 (69%), Positives = 125/147 (85%), Gaps = 6/147 (4%)
Query: 63 CMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADL 122
CMA+PRR+KMVA+QI+RE+ +ML+ DKVL A+LPEAALGAD YLSS+TTISDVE+S DL
Sbjct: 1 CMAHPRRIKMVAQQIRREVGEMLIKDKVLMQAILPEAALGADLYLSSVTTISDVEISRDL 60
Query: 123 QVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
QV K+Y+SVFGD+RGKE+AI GLKS+ KYVR QLG+RMKLRLTPE+RFI D+SFERG+RV
Sbjct: 61 QVAKIYISVFGDERGKEIAIEGLKSREKYVRMQLGKRMKLRLTPEVRFIADDSFERGARV 120
Query: 183 IAILDRIKAEKEAAKSKNKEQFES-PD 208
I +LDR+K E E KE+ E+ PD
Sbjct: 121 IKLLDRLKEEAE-----RKERGETIPD 142
>gi|168062353|ref|XP_001783145.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162665343|gb|EDQ52031.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 140
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 88/140 (62%), Positives = 118/140 (84%)
Query: 61 VKCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSA 120
V CMA+PRRVKMV +QI REL+DMLL D VL+ A++PE+ LGAD YLSS+ TI+DVE+S
Sbjct: 1 VVCMAHPRRVKMVQQQIHRELADMLLHDTVLRQAIVPESGLGADMYLSSMATITDVEISN 60
Query: 121 DLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGS 180
DLQV KV+VS++GD+R +EVA+ GLKSKAKYVR LG+RM LR+TP++RF++DES ERGS
Sbjct: 61 DLQVAKVFVSLYGDEREQEVALEGLKSKAKYVRMGLGKRMSLRMTPDVRFVKDESLERGS 120
Query: 181 RVIAILDRIKAEKEAAKSKN 200
RV+ +LD++K ++E +S +
Sbjct: 121 RVLELLDKVKKDRERKESGD 140
>gi|255080072|ref|XP_002503616.1| predicted protein [Micromonas sp. RCC299]
gi|226518883|gb|ACO64874.1| predicted protein [Micromonas sp. RCC299]
Length = 252
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 86/192 (44%), Positives = 123/192 (64%), Gaps = 13/192 (6%)
Query: 36 SFNSATWAPKSTAAIHLRRSPTRKTVKCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAV 95
S A A K+ A I +P R V CMAN RRV V +Q++RE+S+M+ TDK L+ V
Sbjct: 24 SLGRAQVAKKTHAFIATSAAPLR--VTCMANQRRVAKVQQQMRREISNMMQTDKKLRDMV 81
Query: 96 LPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQ 155
PE +G D +S + T++DVEVS DLQVVKV+VS+ GD+RGK+ AI GLK YVR
Sbjct: 82 YPEERMGVDNVMSCMVTVADVEVSGDLQVVKVFVSILGDERGKKNAINGLKKMEGYVRRN 141
Query: 156 LGRRMKLRLTPEIRFIEDESFERGSRVIAILDRIKAEKEAAKSKN-----------KEQF 204
+G+R+ LRLTP+IRF+ D+SFERG RV ++LD ++ E+E +++ ++
Sbjct: 142 IGKRVSLRLTPDIRFVYDDSFERGQRVSSLLDELRVEREVREARGGGYTKSELLAVEDTI 201
Query: 205 ESPDLPEDERDW 216
+P E++ DW
Sbjct: 202 TNPYGDEEDSDW 213
>gi|303271249|ref|XP_003054986.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462960|gb|EEH60238.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 160
Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 78/149 (52%), Positives = 107/149 (71%), Gaps = 6/149 (4%)
Query: 61 VKCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSA 120
V CMANPRRV V +Q++RE+S+ML TDK L+ + PE +G D +S + T++DVEVS
Sbjct: 1 VTCMANPRRVAKVQQQMRREISNMLQTDKNLRNMISPEERMGVDNVISVMATVADVEVSN 60
Query: 121 DLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGS 180
DLQVVKV+VS+ GD+RGK+ AI GLK YVR +G+++ LRLTPEIRF+ D+SFERG
Sbjct: 61 DLQVVKVFVSILGDERGKKNAINGLKKMEGYVRRNIGKKVSLRLTPEIRFVYDDSFERGQ 120
Query: 181 RVIAILDRIKAEKEAAKSKNKEQFESPDL 209
+V A+LD ++ E++ QF S +L
Sbjct: 121 KVSALLDELREERDG------RQFTSEEL 143
>gi|145348606|ref|XP_001418737.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578967|gb|ABO97030.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 171
Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 86/171 (50%), Positives = 114/171 (66%), Gaps = 11/171 (6%)
Query: 61 VKCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSA 120
V MA+PRRV+ V +Q++RE+S M+ +DK L+ + PE +G D LS + T++DVEVS
Sbjct: 1 VVAMAHPRRVQKVQQQMRREISSMMQSDKNLRAMISPEERMGVDHMLSVMATVADVEVSN 60
Query: 121 DLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGS 180
DLQVVKVYVS+ GD+RGK AI G+K +YVR ++GRRM LRLTPEIRFI D+SFERG
Sbjct: 61 DLQVVKVYVSILGDERGKNNAIKGMKRMEQYVRRKIGRRMSLRLTPEIRFIYDDSFERGQ 120
Query: 181 RVIAILDRIKAE--KEAAKSKNKEQFESPD---------LPEDERDWEGDD 220
+V A+LD I+ E + AK K+ S + EDE +W DD
Sbjct: 121 KVSALLDEIRLENRNKTAKKYGKDALMSVEDVIAERGEVEDEDESEWGMDD 171
>gi|307111428|gb|EFN59662.1| hypothetical protein CHLNCDRAFT_12877, partial [Chlorella
variabilis]
Length = 128
Score = 139 bits (351), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 66/127 (51%), Positives = 95/127 (74%)
Query: 65 ANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQV 124
A+PRRV VAKQI+RE+ +L++DK +Q AV PE G D LS+L ++++V +S DLQV
Sbjct: 2 AHPRRVAKVAKQIEREVGQLLISDKTMQAAVCPERRRGFDGALSALASVTEVHISNDLQV 61
Query: 125 VKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIA 184
KVY+S++ DD GKEVAI GL+ YVR +G++++LRLTPEIRF+ D+S ER R++
Sbjct: 62 AKVYLSIYSDDVGKEVAIEGLQRLEGYVRKHIGKQIRLRLTPEIRFVRDDSIERSERILK 121
Query: 185 ILDRIKA 191
+LD++ A
Sbjct: 122 LLDQVPA 128
>gi|384250755|gb|EIE24234.1| ribosome-binding factor A [Coccomyxa subellipsoidea C-169]
Length = 262
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/135 (49%), Positives = 96/135 (71%), Gaps = 1/135 (0%)
Query: 57 TRKTVKCMAN-PRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISD 115
+ + +C ++ RRV VAKQI+RE+ +LLTD+VLQ AV PE LG D +S+L +++D
Sbjct: 6 VKSSTRCSSSQKRRVARVAKQIEREVGTLLLTDRVLQGAVSPEVKLGLDSAVSALASVTD 65
Query: 116 VEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDES 175
VE+S DLQV KVY+S++ D GK++A+ GL YVR + + + LRL PEIRFI D+S
Sbjct: 66 VELSNDLQVAKVYISIYSDPEGKDIAMRGLSRLEGYVRKHIAQTVNLRLCPEIRFIRDDS 125
Query: 176 FERGSRVIAILDRIK 190
+RG V+A+L+RIK
Sbjct: 126 MQRGEEVLALLERIK 140
>gi|412991498|emb|CCO16343.1| ribosome-binding factor A [Bathycoccus prasinos]
Length = 233
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/129 (49%), Positives = 91/129 (70%), Gaps = 1/129 (0%)
Query: 59 KTVKCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEV 118
K + C A+PRRV V +Q++RE+ +M D ++ + P+ G D ++L T++D EV
Sbjct: 42 KEIVC-ADPRRVARVQQQMRREIGNMFQNDAKIKGMLNPDVKFGVDVNSTTLATVADCEV 100
Query: 119 SADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFER 178
S DLQVVKVYVSV GD+RGK+ A+ GL+ YVR ++G ++ LRLTPE+RF+ DESFER
Sbjct: 101 SNDLQVVKVYVSVLGDERGKKNAMKGLQKLEGYVRGKIGSKISLRLTPEVRFVLDESFER 160
Query: 179 GSRVIAILD 187
G +V +ILD
Sbjct: 161 GQKVNSILD 169
>gi|159473747|ref|XP_001694995.1| predicted protein [Chlamydomonas reinhardtii]
gi|158276374|gb|EDP02147.1| predicted protein [Chlamydomonas reinhardtii]
Length = 196
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/151 (48%), Positives = 97/151 (64%), Gaps = 6/151 (3%)
Query: 37 FNSATWAPKSTAAIHLRRSPTRKTVKCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVL 96
S AP S + RR R V CMA+PRRV VA IQRE+ DM ++D V+Q A+
Sbjct: 37 LRSRAVAPHSAQPVQHRRG--RLEVVCMAHPRRVAKVASAIQREIGDMFVSDPVIQAAIC 94
Query: 97 PEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQL 156
PE LG D LS++ +I+D VS DLQVVKV+VSV+ DD GK VA+ L+ YVR +
Sbjct: 95 PERKLG-DDALSAVASITDTYVSNDLQVVKVFVSVYSDDYGKRVAMENLQRLEPYVRRLI 153
Query: 157 GRRMKLRLTPEIRFIEDESFERG---SRVIA 184
G+R++LRLTPE+RF+ D++ E +RVI
Sbjct: 154 GQRVRLRLTPEVRFVYDDAEEEADLVARVIG 184
>gi|147834309|emb|CAN61115.1| hypothetical protein VITISV_035585 [Vitis vinifera]
Length = 731
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 66/85 (77%), Positives = 71/85 (83%), Gaps = 1/85 (1%)
Query: 46 STAA-IHLRRSPTRKTVKCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGAD 104
STA +H+ TV+CMAN RRVKMVAKQI+RELSDMLLTDKVLQFAVLPEAALGAD
Sbjct: 322 STAXEVHVAGPHQIATVRCMANQRRVKMVAKQIRRELSDMLLTDKVLQFAVLPEAALGAD 381
Query: 105 RYLSSLTTISDVEVSADLQVVKVYV 129
RYLSSLTTISDVEVSADLQ Y+
Sbjct: 382 RYLSSLTTISDVEVSADLQCSWGYL 406
Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 54/65 (83%), Positives = 60/65 (92%)
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
VVKVYVSVFGD++GKEVAIAGLKSKAKYVRS+LGRRMKLRLTPEIRF+EDES ERGSR +
Sbjct: 664 VVKVYVSVFGDEKGKEVAIAGLKSKAKYVRSELGRRMKLRLTPEIRFVEDESLERGSRTL 723
Query: 184 AILDR 188
D+
Sbjct: 724 HFQDQ 728
>gi|411120102|ref|ZP_11392478.1| ribosome-binding factor A [Oscillatoriales cyanobacterium JSC-12]
gi|410710258|gb|EKQ67769.1| ribosome-binding factor A [Oscillatoriales cyanobacterium JSC-12]
Length = 133
Score = 119 bits (299), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 98/147 (66%), Gaps = 15/147 (10%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV V++QI+RE+S MLL D + DR + + ++++V+VS DLQ
Sbjct: 1 MATSRRVARVSEQIKREVSKMLLQD------------IKDDRVGAGMVSVTEVDVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G K +AGLK+ +VRS+LG+RM+LR TPE+ F+ED S ERG RV+
Sbjct: 49 HAKIFVSIYGTSEAKAETMAGLKAATGFVRSELGQRMRLRRTPEVIFLEDNSLERGDRVL 108
Query: 184 AILDRIKAEKEAAKSKNKEQFESPDLP 210
++++RI E++ AK+K+ E F+ D+P
Sbjct: 109 SLINRISQERQTAKAKD-EDFD--DVP 132
>gi|427738096|ref|YP_007057640.1| ribosome-binding factor A [Rivularia sp. PCC 7116]
gi|427373137|gb|AFY57093.1| ribosome-binding factor A [Rivularia sp. PCC 7116]
Length = 129
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/139 (42%), Positives = 92/139 (66%), Gaps = 12/139 (8%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV VA+ I+RE+S MLL + DR + + +++DV+VS DLQ
Sbjct: 1 MATNRRVSRVAELIRREVSQMLLN------------GIKDDRVGTGMVSVTDVDVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K+YVS++G D +E +AGLKS YVRS+LG R++LR TPE+ F+ED S ERG++V+
Sbjct: 49 HAKIYVSIYGTDEAREETMAGLKSATGYVRSELGSRVRLRRTPEVIFLEDRSIERGNKVL 108
Query: 184 AILDRIKAEKEAAKSKNKE 202
++L++IK +++ +N++
Sbjct: 109 SLLNQIKDRQKSEFQENQQ 127
>gi|428301400|ref|YP_007139706.1| ribosome-binding factor A [Calothrix sp. PCC 6303]
gi|428237944|gb|AFZ03734.1| ribosome-binding factor A [Calothrix sp. PCC 6303]
Length = 133
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 59/142 (41%), Positives = 88/142 (61%), Gaps = 12/142 (8%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV VA+ I+RE+S MLL + DR + + ++++V VS DLQ
Sbjct: 1 MATNRRVSRVAELIRREISQMLLN------------GIKDDRVGTGMVSVTNVNVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K+YVS++GDD K +AGLKS YVRS+LG RM LR TPE+ FIED S E G++V+
Sbjct: 49 HAKIYVSIYGDDAAKAETMAGLKSATGYVRSELGARMSLRRTPEVIFIEDNSIEEGTKVL 108
Query: 184 AILDRIKAEKEAAKSKNKEQFE 205
++L+++++ ++ N + E
Sbjct: 109 SLLNQLQSRRQDVSEGNSDSEE 130
>gi|354565255|ref|ZP_08984430.1| Ribosome-binding factor A [Fischerella sp. JSC-11]
gi|353549214|gb|EHC18656.1| Ribosome-binding factor A [Fischerella sp. JSC-11]
Length = 130
Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 90/140 (64%), Gaps = 12/140 (8%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV VA+ I+RE+S MLL + DR + +++DV+VS DLQ
Sbjct: 1 MATSRRVSRVAELIKREVSQMLLN------------GIKDDRVGMGMVSVTDVDVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K+YVS++G + K +AGLKS YVRS+LG R++LR TPE+ FIED S ERGS+V+
Sbjct: 49 HAKIYVSIYGTEEAKAETMAGLKSATGYVRSELGARVRLRRTPEVVFIEDRSIERGSKVL 108
Query: 184 AILDRIKAEKEAAKSKNKEQ 203
++L++++ +++ +N E+
Sbjct: 109 SLLNQLELQRKPENGENDEE 128
>gi|427716825|ref|YP_007064819.1| ribosome-binding factor A [Calothrix sp. PCC 7507]
gi|427349261|gb|AFY31985.1| ribosome-binding factor A [Calothrix sp. PCC 7507]
Length = 136
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 86/130 (66%), Gaps = 12/130 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV VA+ I+RE+S MLL + DR + + +++DV+VS DLQ
Sbjct: 1 MATNRRVSRVAELIKREVSQMLLN------------GIKDDRVGTGMVSVTDVDVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G D K +AGLKS YVRS+LG R++LR TPE+ F+ED S ERG++V+
Sbjct: 49 HAKIFVSIYGSDEAKAETMAGLKSATGYVRSELGARVRLRRTPEVIFVEDRSIERGTKVL 108
Query: 184 AILDRIKAEK 193
++L+++K E+
Sbjct: 109 SLLNKLKDER 118
>gi|428206603|ref|YP_007090956.1| ribosome-binding factor A [Chroococcidiopsis thermalis PCC 7203]
gi|428008524|gb|AFY87087.1| ribosome-binding factor A [Chroococcidiopsis thermalis PCC 7203]
Length = 139
Score = 112 bits (281), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 95/157 (60%), Gaps = 20/157 (12%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV VA+ I+RE+S MLL + DR + +++DV+VS DLQ
Sbjct: 1 MATSRRVDRVAELIKREVSQMLLN------------GIKDDRVGVGMVSVTDVDVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K+YVS++G D +E +AGLKS YVR +LG+R++LR TPE+ F ED S ERG+RV+
Sbjct: 49 HAKIYVSIYGSDDAREQTMAGLKSATGYVRRELGQRIRLRRTPEVVFHEDRSIERGTRVL 108
Query: 184 AILDRIKAEKEAAKSKNKEQFESPDLPEDERDWEGDD 220
++++R+ ++ A N E PD EDE + +D
Sbjct: 109 SLINRLNQDRPA----NLE----PDYKEDEIEISAED 137
>gi|298493008|ref|YP_003723185.1| ribosome-binding factor A ['Nostoc azollae' 0708]
gi|298234926|gb|ADI66062.1| ribosome-binding factor A ['Nostoc azollae' 0708]
Length = 132
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 92/148 (62%), Gaps = 16/148 (10%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV VA+ I+RE+S MLL + DR + + +++DV+VS DLQ
Sbjct: 1 MATNRRVSRVAELIKREVSQMLLN------------GIKDDRVGTGMVSVTDVDVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G K +AGLKS YVRS+LG R++LR TPE+ F+ED S ERG++V+
Sbjct: 49 HAKIFVSIYGTQEAKAETMAGLKSATGYVRSELGARVRLRRTPEVIFVEDRSLERGTKVL 108
Query: 184 AILDRIKAEKEAAKSKNKEQFESPDLPE 211
++L++++ E+ ++ +Q D PE
Sbjct: 109 SLLNQLQQERSLESTQEDDQ----DFPE 132
>gi|443319074|ref|ZP_21048311.1| ribosome-binding factor A [Leptolyngbya sp. PCC 6406]
gi|442781272|gb|ELR91375.1| ribosome-binding factor A [Leptolyngbya sp. PCC 6406]
Length = 139
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 86/130 (66%), Gaps = 12/130 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV VA I+RE+S ML++ + DR + + +++DVEVS DLQ
Sbjct: 1 MATSRRVARVASLIKREVSQMLVS------------GIKDDRVGAGMVSVTDVEVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G D + +AGL++ YVRS+LG+RM+LR TPE+ F ED FERG++V+
Sbjct: 49 HAKIFVSIYGTDEARTETMAGLEAATSYVRSELGQRMRLRRTPEVLFREDRGFERGTQVL 108
Query: 184 AILDRIKAEK 193
++L+R+ +E+
Sbjct: 109 SLLNRLSSER 118
>gi|427728738|ref|YP_007074975.1| ribosome-binding factor A [Nostoc sp. PCC 7524]
gi|427364657|gb|AFY47378.1| ribosome-binding factor A [Nostoc sp. PCC 7524]
Length = 131
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 89/141 (63%), Gaps = 12/141 (8%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV VA+ I+RE+S ML+ + DR + + +++DV+VS DLQ
Sbjct: 1 MATNRRVSRVAELIKREVSQMLI------------HGIKDDRVGTGMVSVTDVDVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K+YVS++G + K +AGLKS +VRS+LG R++LR TPE+ FIED S ERG++V+
Sbjct: 49 HAKIYVSIYGTEEAKAETMAGLKSATGFVRSELGARVRLRRTPEVIFIEDRSIERGTKVL 108
Query: 184 AILDRIKAEKEAAKSKNKEQF 204
++L++++ E+ + EQ
Sbjct: 109 SLLNKLQDERHDTTDNSDEQL 129
>gi|428319998|ref|YP_007117880.1| ribosome-binding factor A [Oscillatoria nigro-viridis PCC 7112]
gi|428243678|gb|AFZ09464.1| ribosome-binding factor A [Oscillatoria nigro-viridis PCC 7112]
Length = 136
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 92/148 (62%), Gaps = 15/148 (10%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RR++ VA ++RE+S MLL + DR + + +++DV VS DLQ
Sbjct: 1 MATSRRIERVASMVKREVSLMLLN------------GIKDDRVGAGMVSVTDVIVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G D K + GLKS YVRSQLG+R++LR TPE+ F+ED S ERG +++
Sbjct: 49 HTKIFVSIYGTDEAKAETMEGLKSATSYVRSQLGQRLQLRRTPEVIFLEDHSLERGDKML 108
Query: 184 AILDRIKAEKEAAKSKNKEQF---ESPD 208
+L+++ A+++ +E+F ESPD
Sbjct: 109 MLLNQLSADRKPDILDTEEEFADDESPD 136
>gi|428306436|ref|YP_007143261.1| ribosome-binding factor A [Crinalium epipsammum PCC 9333]
gi|428247971|gb|AFZ13751.1| Ribosome-binding factor A [Crinalium epipsammum PCC 9333]
Length = 137
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 84/129 (65%), Gaps = 12/129 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV VA+QI+RE+ ML+ D + DR + + +++DV+VS DLQ
Sbjct: 1 MATDRRVSRVAEQIKREIGQMLIQD------------IKDDRVGAGMVSVTDVDVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G D K +AGLK+ YVR +LG R++LR TPE+ F+ED S ERG+RV+
Sbjct: 49 HAKIFVSIYGTDEAKAETMAGLKAATGYVRRELGHRVRLRRTPEVIFLEDRSIERGNRVL 108
Query: 184 AILDRIKAE 192
+++++I E
Sbjct: 109 SLINKISQE 117
>gi|186681202|ref|YP_001864398.1| ribosome-binding factor A [Nostoc punctiforme PCC 73102]
gi|28380131|sp|Q93LL7.1|RBFA_NOSP7 RecName: Full=Ribosome-binding factor A
gi|14594717|gb|AAK68649.1| ribosome binding factor A [Nostoc punctiforme PCC 73102]
gi|186463654|gb|ACC79455.1| ribosome-binding factor A [Nostoc punctiforme PCC 73102]
Length = 139
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 84/130 (64%), Gaps = 12/130 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV VA+ I+RE+S MLL + DR + + +++DV+VS DLQ
Sbjct: 1 MATNRRVSRVAELIKREVSQMLLN------------GIKDDRVGTGMVSVTDVDVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K+YVS++G D K +AGLKS YVRS+LG R++LR TPE+ F+ED S ERG++V+
Sbjct: 49 HAKIYVSIYGTDEAKVETMAGLKSATGYVRSELGARVRLRRTPEVIFLEDRSIERGNKVL 108
Query: 184 AILDRIKAEK 193
A+L ++ ++
Sbjct: 109 ALLSQLNHDR 118
>gi|440683613|ref|YP_007158408.1| ribosome-binding factor A [Anabaena cylindrica PCC 7122]
gi|428680732|gb|AFZ59498.1| ribosome-binding factor A [Anabaena cylindrica PCC 7122]
Length = 133
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 92/141 (65%), Gaps = 14/141 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV VA+ I+RE+S MLL + DR + + +++DV+VS DLQ
Sbjct: 1 MATNRRVSRVAELIKREVSQMLLN------------GIKDDRVGTGMVSVTDVDVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G + K +AGLKS YVRS+LG R++LR TPE+ F+ED+S ERG++++
Sbjct: 49 HAKIFVSIYGTEEAKAETMAGLKSATGYVRSELGARVRLRRTPEVIFVEDDSLERGTKLL 108
Query: 184 AILDRIKAEK--EAAKSKNKE 202
++L++++ ++ E + N+E
Sbjct: 109 SLLNQLRQDRPPEGTDADNQE 129
>gi|220906274|ref|YP_002481585.1| ribosome-binding factor A [Cyanothece sp. PCC 7425]
gi|254789745|sp|B8HWS1.1|RBFA_CYAP4 RecName: Full=Ribosome-binding factor A
gi|219862885|gb|ACL43224.1| ribosome-binding factor A [Cyanothece sp. PCC 7425]
Length = 134
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 92/145 (63%), Gaps = 12/145 (8%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV VA+ I+RE+S ML++ + DR S + +++DV++S DLQ
Sbjct: 1 MATDRRVARVAELIKREISQMLMS------------GIKDDRVGSGMVSVTDVDLSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G + + +AGLK+ YVRS+LG R++LR TPE+ F+ED S ERG++V+
Sbjct: 49 HAKIFVSIYGTEAARAETMAGLKAATGYVRSELGHRVRLRRTPEVVFLEDRSLERGTQVL 108
Query: 184 AILDRIKAEKEAAKSKNKEQFESPD 208
++L+R+ E++ ++ E P+
Sbjct: 109 SLLNRLSEERQKNADLDEMAAEEPE 133
>gi|427707804|ref|YP_007050181.1| ribosome-binding factor A [Nostoc sp. PCC 7107]
gi|427360309|gb|AFY43031.1| ribosome-binding factor A [Nostoc sp. PCC 7107]
Length = 134
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 84/127 (66%), Gaps = 12/127 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV VA+ I+RE+S MLL + DR S + +++DV+VS DLQ
Sbjct: 1 MATNRRVSRVAELIKREVSQMLLN------------GIKDDRVGSGMVSVTDVDVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K+YVS++G + K +AGLKS +VRS+LG R++LR TPE+ FIED S ERG++V+
Sbjct: 49 HAKIYVSIYGTEDAKAETMAGLKSATGFVRSELGARVRLRRTPEVIFIEDRSIERGNKVL 108
Query: 184 AILDRIK 190
++L++++
Sbjct: 109 SLLNKLQ 115
>gi|434391532|ref|YP_007126479.1| ribosome-binding factor A [Gloeocapsa sp. PCC 7428]
gi|428263373|gb|AFZ29319.1| ribosome-binding factor A [Gloeocapsa sp. PCC 7428]
Length = 136
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 86/131 (65%), Gaps = 12/131 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV VA+ I+RE+S MLL D + DR + + +++DV+VS DLQ
Sbjct: 1 MATSRRVSRVAELIKREVSQMLLHD------------IKDDRVGAGMVSVTDVDVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G D + +AGLKS Y+RS+LG+R++LR TPEI F ED S ERG+RV+
Sbjct: 49 HAKIFVSIYGTDEARAETMAGLKSATGYIRSELGQRVRLRRTPEIVFQEDRSIERGNRVL 108
Query: 184 AILDRIKAEKE 194
++++++ ++
Sbjct: 109 SLINQLNQNRQ 119
>gi|434404333|ref|YP_007147218.1| ribosome-binding factor A [Cylindrospermum stagnale PCC 7417]
gi|428258588|gb|AFZ24538.1| ribosome-binding factor A [Cylindrospermum stagnale PCC 7417]
Length = 132
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 84/130 (64%), Gaps = 12/130 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV VA+ I+RE+S MLL + DR + + +++DV VS DLQ
Sbjct: 1 MATDRRVSRVAELIKREVSQMLLN------------GIKDDRVGTGMVSVTDVNVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G + K +AGLKS YVRS++G R++LR TPE+ FIED S ERG++V+
Sbjct: 49 HAKIFVSIYGTEEAKAETMAGLKSATGYVRSEIGARVRLRRTPEVIFIEDCSIERGNKVL 108
Query: 184 AILDRIKAEK 193
A+L ++K ++
Sbjct: 109 ALLSQLKDQR 118
>gi|75908877|ref|YP_323173.1| ribosome-binding factor A [Anabaena variabilis ATCC 29413]
gi|123609303|sp|Q3M9Q8.1|RBFA_ANAVT RecName: Full=Ribosome-binding factor A
gi|75702602|gb|ABA22278.1| ribosome-binding factor A [Anabaena variabilis ATCC 29413]
Length = 133
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 83/127 (65%), Gaps = 12/127 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV VA+ I+RE+S ML+ + DR + + +++DV+VS DLQ
Sbjct: 1 MATNRRVSRVAELIKREVSQMLIN------------GIKDDRVGTGMVSVTDVDVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K+YVS++G + K +AGLKS +VRS+LG R++LR TPE+ FIED S ERG++V+
Sbjct: 49 HAKIYVSIYGTEEAKAETMAGLKSATGFVRSELGARVRLRRTPEVTFIEDRSIERGTKVL 108
Query: 184 AILDRIK 190
+L++++
Sbjct: 109 TLLNKLE 115
>gi|17227559|ref|NP_484107.1| ribosome-binding factor A [Nostoc sp. PCC 7120]
gi|20978596|sp|Q8Z0M8.1|RBFA_ANASP RecName: Full=Ribosome-binding factor A
gi|17135041|dbj|BAB77587.1| ribosome binding facror A [Nostoc sp. PCC 7120]
Length = 133
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 83/127 (65%), Gaps = 12/127 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV VA+ I+RE+S ML+ + DR + + +++DV+VS DLQ
Sbjct: 1 MATNRRVSRVAELIKREVSQMLIN------------GIKDDRVGTGMVSVTDVDVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K+YVS++G + K +AGLKS +VRS+LG R++LR TPE+ FIED S ERG++V+
Sbjct: 49 HAKIYVSIYGTEEAKAETMAGLKSATGFVRSELGARVRLRRTPEVTFIEDRSIERGTKVL 108
Query: 184 AILDRIK 190
+L++++
Sbjct: 109 TLLNKLE 115
>gi|254411561|ref|ZP_05025337.1| ribosome-binding factor A [Coleofasciculus chthonoplastes PCC 7420]
gi|196181283|gb|EDX76271.1| ribosome-binding factor A [Coleofasciculus chthonoplastes PCC 7420]
Length = 132
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 90/145 (62%), Gaps = 14/145 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV V+ IQ+E+S MLL D + DR + + +++DV+VS DLQ
Sbjct: 1 MATNRRVSRVSSLIQQEVSQMLLHD------------IKDDRVGAGMVSVTDVDVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K+YVS++G + K +AGL+S +VR +LGRR++LR TPE+ FIED ERG+R++
Sbjct: 49 HAKIYVSIYGTEEAKSETMAGLQSATGFVRRELGRRVRLRRTPEVVFIEDRGLERGARML 108
Query: 184 AILDRIKAEKEAAKSKNKEQFESPD 208
+L+++ E+ + +QFE+ +
Sbjct: 109 TLLNQLSQERR--RKGLDDQFEAEN 131
>gi|425440372|ref|ZP_18820676.1| Ribosome-binding factor A [Microcystis aeruginosa PCC 9717]
gi|389719207|emb|CCH96933.1| Ribosome-binding factor A [Microcystis aeruginosa PCC 9717]
Length = 128
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 87/130 (66%), Gaps = 12/130 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MAN RRV V+ I+RE+S MLL + + DR + + +++DV++S DLQ
Sbjct: 1 MANDRRVSRVSSLIKREVSQMLLME------------IKDDRVGAGMVSVTDVDLSHDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G++ K +AGLK+ A +VR +LG+R++LR TPE+ F+ED S ERG R++
Sbjct: 49 HAKIFVSIYGNEDAKAETMAGLKASAGFVRRELGQRIRLRRTPEVVFLEDSSLERGDRML 108
Query: 184 AILDRIKAEK 193
+LD IK+++
Sbjct: 109 HLLDHIKSDR 118
>gi|166363717|ref|YP_001655990.1| ribosome-binding factor A [Microcystis aeruginosa NIES-843]
gi|189039547|sp|B0JRP8.1|RBFA_MICAN RecName: Full=Ribosome-binding factor A
gi|166086090|dbj|BAG00798.1| ribosome binding factor A [Microcystis aeruginosa NIES-843]
Length = 128
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 90/140 (64%), Gaps = 12/140 (8%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MAN RRV V+ I+RE+S MLL + + DR + + +++DV++S DLQ
Sbjct: 1 MANDRRVSRVSSLIKREVSQMLLME------------IKDDRVGAGMVSVTDVDLSHDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G++ K +AGLK+ A +VR +LG+R++LR TPE+ F+ED S ERG R++
Sbjct: 49 HAKIFVSIYGNEDAKAETMAGLKASAGFVRRELGQRIRLRRTPEVVFLEDSSLERGDRML 108
Query: 184 AILDRIKAEKEAAKSKNKEQ 203
+LD IK ++ ++E+
Sbjct: 109 HLLDHIKTDRPPEDDDSEEE 128
>gi|428309326|ref|YP_007120303.1| ribosome-binding factor A [Microcoleus sp. PCC 7113]
gi|428250938|gb|AFZ16897.1| ribosome-binding factor A [Microcoleus sp. PCC 7113]
Length = 132
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 90/150 (60%), Gaps = 19/150 (12%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
M RRV VA IQ+E+S M+L + + DR + + +++DV+VS DLQ
Sbjct: 1 MPTSRRVSRVASLIQQEVSQMVLHE------------IKDDRVGAGMVSVTDVDVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K+YVS++G D + +AGLKS YVR LG+R++LR TPE+ FIED ERG R++
Sbjct: 49 HAKIYVSIYGTDEARAETMAGLKSATGYVRRALGQRIRLRRTPEVIFIEDRGLERGDRML 108
Query: 184 AILDRIKAEKEAAKSKNKEQFESPDLPEDE 213
+LD++ E+++ + ++ D+PE E
Sbjct: 109 TLLDQLSEERQSKELED-------DIPEAE 131
>gi|119509684|ref|ZP_01628830.1| ribosome-binding factor A [Nodularia spumigena CCY9414]
gi|119465703|gb|EAW46594.1| ribosome-binding factor A [Nodularia spumigena CCY9414]
Length = 142
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 86/130 (66%), Gaps = 12/130 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RR+ VA+ I+RE+S MLL + DR + + +++ V+VS DLQ
Sbjct: 1 MATNRRISRVAELIKREVSQMLL------------HGIKDDRVGTGMVSVTYVDVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
KVYVS++G + K +AGLKS +VRS+LG R++LR TPE+ FIED+S E+G++V+
Sbjct: 49 HAKVYVSIYGTESAKSETMAGLKSATGFVRSELGSRVRLRRTPEVIFIEDDSIEQGNKVL 108
Query: 184 AILDRIKAEK 193
++L++++ E+
Sbjct: 109 SLLNKLEDER 118
>gi|425467752|ref|ZP_18847031.1| Ribosome-binding factor A [Microcystis aeruginosa PCC 9809]
gi|389829375|emb|CCI29331.1| Ribosome-binding factor A [Microcystis aeruginosa PCC 9809]
Length = 128
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 89/140 (63%), Gaps = 12/140 (8%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MAN RRV V+ I+RE+S MLL + + DR + + +++DV +S DLQ
Sbjct: 1 MANDRRVSRVSSLIKREVSQMLLME------------IKDDRVGAGMVSVTDVALSHDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G++ K +AGLK+ A +VR +LG+R++LR TPE+ F+ED S ERG R++
Sbjct: 49 HAKIFVSIYGNEDAKAETMAGLKASAGFVRRELGQRIRLRRTPEVVFLEDSSLERGDRML 108
Query: 184 AILDRIKAEKEAAKSKNKEQ 203
+LD IK ++ ++E+
Sbjct: 109 HLLDHIKTDRPPEDDDSEEE 128
>gi|427712997|ref|YP_007061621.1| ribosome-binding factor A [Synechococcus sp. PCC 6312]
gi|427377126|gb|AFY61078.1| ribosome-binding factor A [Synechococcus sp. PCC 6312]
Length = 164
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 85/126 (67%), Gaps = 12/126 (9%)
Query: 62 KCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSAD 121
K MA PRRV+ VA+ I+RE+S +L+ + + +R + + +++DV VS D
Sbjct: 30 KIMAPPRRVERVAELIRREVSQLLVHN------------IKDERVGNGMVSVTDVIVSGD 77
Query: 122 LQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSR 181
LQ K++VS++G D + +AGLK+ YVRS++G+R++LR TPEI F+ED S ERG++
Sbjct: 78 LQHAKIFVSIYGTDEVRTATMAGLKAATGYVRSEIGQRVRLRRTPEIVFVEDRSLERGTK 137
Query: 182 VIAILD 187
V+++L+
Sbjct: 138 VLSLLN 143
>gi|434397466|ref|YP_007131470.1| ribosome-binding factor A [Stanieria cyanosphaera PCC 7437]
gi|428268563|gb|AFZ34504.1| ribosome-binding factor A [Stanieria cyanosphaera PCC 7437]
Length = 133
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 88/149 (59%), Gaps = 18/149 (12%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MAN RRV ++ I+RE+S MLL + DR + + +I+DV+VS DLQ
Sbjct: 1 MANNRRVSRISSLIKREVSQMLLN------------GIKDDRVGAGMVSITDVDVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G + K + GLKS +VR +LG R++LR TPE+ F+ED S ERG R++
Sbjct: 49 HAKIFVSIYGTEEAKAETMEGLKSSTAFVRKELGHRIRLRRTPEVIFLEDNSLERGDRIL 108
Query: 184 AILDRIKAEKEAAKSKNKEQFESPDLPED 212
++++I +++ S + DL ED
Sbjct: 109 NLINQISSDRSDDNSI------TDDLEED 131
>gi|332706081|ref|ZP_08426153.1| ribosome-binding factor A [Moorea producens 3L]
gi|332355173|gb|EGJ34641.1| ribosome-binding factor A [Moorea producens 3L]
Length = 132
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 83/134 (61%), Gaps = 12/134 (8%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
M RRV V+ IQ+E+S MLL D + DR S + +I++V+VS DLQ
Sbjct: 1 MTTNRRVFRVSSLIQQEVSQMLLND------------IKDDRVGSGMVSITNVDVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K+YVS++G D + +AGLKS YVR +LGRR++LR TPE+ FIED E G +++
Sbjct: 49 HAKIYVSIYGTDEARSKTMAGLKSATGYVRRELGRRIRLRRTPEVMFIEDRGLEGGDQML 108
Query: 184 AILDRIKAEKEAAK 197
+L+++ E+++ +
Sbjct: 109 NLLNQLSQERQSKQ 122
>gi|425452068|ref|ZP_18831886.1| Ribosome-binding factor A [Microcystis aeruginosa PCC 7941]
gi|389766311|emb|CCI08035.1| Ribosome-binding factor A [Microcystis aeruginosa PCC 7941]
Length = 130
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 86/130 (66%), Gaps = 12/130 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MAN RRV V+ I+RE+S MLL + + DR + + +++DV++S DLQ
Sbjct: 1 MANDRRVSRVSSLIKREVSQMLLME------------IKDDRVGAGMVSVTDVDLSHDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
+++VS++G+ K +AGLK+ A +VR +LG+R++LR TPE+ F+ED S ERG R++
Sbjct: 49 RARIFVSIYGNKDAKAETMAGLKAAAGFVRRELGQRIRLRRTPEVVFLEDSSLERGDRML 108
Query: 184 AILDRIKAEK 193
+LD IK+++
Sbjct: 109 HLLDHIKSDR 118
>gi|425447498|ref|ZP_18827486.1| Ribosome-binding factor A [Microcystis aeruginosa PCC 9443]
gi|425453251|ref|ZP_18833010.1| Ribosome-binding factor A [Microcystis aeruginosa PCC 9807]
gi|440753975|ref|ZP_20933177.1| ribosome-binding factor A [Microcystis aeruginosa TAIHU98]
gi|159030294|emb|CAO91189.1| rbfA [Microcystis aeruginosa PCC 7806]
gi|389731920|emb|CCI04072.1| Ribosome-binding factor A [Microcystis aeruginosa PCC 9443]
gi|389804491|emb|CCI16466.1| Ribosome-binding factor A [Microcystis aeruginosa PCC 9807]
gi|440174181|gb|ELP53550.1| ribosome-binding factor A [Microcystis aeruginosa TAIHU98]
Length = 130
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 86/130 (66%), Gaps = 12/130 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MAN RRV V+ I+RE+S MLL + + DR + + +++DV++S DLQ
Sbjct: 1 MANDRRVSRVSSLIKREVSQMLLME------------IKDDRVGAGMVSVTDVDLSHDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
+++VS++G+ K +AGLK+ A +VR +LG+R++LR TPE+ F+ED S ERG R++
Sbjct: 49 HARIFVSIYGNKDAKAETMAGLKAAAGFVRRELGQRIRLRRTPEVVFLEDSSLERGDRML 108
Query: 184 AILDRIKAEK 193
+LD IK+++
Sbjct: 109 HLLDHIKSDR 118
>gi|422303206|ref|ZP_16390560.1| Ribosome-binding factor A [Microcystis aeruginosa PCC 9806]
gi|425435018|ref|ZP_18815478.1| Ribosome-binding factor A [Microcystis aeruginosa PCC 9432]
gi|425458595|ref|ZP_18838083.1| Ribosome-binding factor A [Microcystis aeruginosa PCC 9808]
gi|425471309|ref|ZP_18850169.1| Ribosome-binding factor A [Microcystis aeruginosa PCC 9701]
gi|389675268|emb|CCH95592.1| Ribosome-binding factor A [Microcystis aeruginosa PCC 9432]
gi|389791869|emb|CCI12363.1| Ribosome-binding factor A [Microcystis aeruginosa PCC 9806]
gi|389826300|emb|CCI23242.1| Ribosome-binding factor A [Microcystis aeruginosa PCC 9808]
gi|389882810|emb|CCI36733.1| Ribosome-binding factor A [Microcystis aeruginosa PCC 9701]
Length = 130
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 86/130 (66%), Gaps = 12/130 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MAN RRV V+ I+RE+S MLL + + DR + + +++DV++S DLQ
Sbjct: 1 MANDRRVSRVSSLIKREVSQMLLME------------IKDDRVGAGMVSVTDVDLSHDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
+++VS++G+ K +AGLK+ A +VR +LG+R++LR TPE+ F+ED S ERG R++
Sbjct: 49 HARIFVSIYGNKDAKAETMAGLKAAAGFVRRELGQRIRLRRTPEVVFLEDSSLERGDRML 108
Query: 184 AILDRIKAEK 193
+LD IK+++
Sbjct: 109 HLLDHIKSDR 118
>gi|428214999|ref|YP_007088143.1| ribosome-binding factor A [Oscillatoria acuminata PCC 6304]
gi|428003380|gb|AFY84223.1| ribosome-binding factor A [Oscillatoria acuminata PCC 6304]
Length = 142
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 90/150 (60%), Gaps = 14/150 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV+ VA I+RE+S ML++D + DR + + +++DV VS DLQ
Sbjct: 1 MATDRRVERVASLIKREVSLMLISD------------IKDDRVGAGMVSVTDVNVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G D + + GL++ Y+R +LG R++LR TPE+ F+ED S ERG+R++
Sbjct: 49 HAKIFVSIYGSDEARAETMEGLQAATGYIRRELGHRVRLRRTPEVIFLEDRSIERGTRIL 108
Query: 184 AILDRIKAEKEAAKSKNKEQFESPDLPEDE 213
+L++I E++ E E DL E E
Sbjct: 109 TLLNQISEERKQHNPDADE--EDMDLNESE 136
>gi|428224545|ref|YP_007108642.1| ribosome-binding factor A [Geitlerinema sp. PCC 7407]
gi|427984446|gb|AFY65590.1| ribosome-binding factor A [Geitlerinema sp. PCC 7407]
Length = 146
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 98/159 (61%), Gaps = 19/159 (11%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV V+ I+RE+S ML++ + DR + + +++DV+VS DLQ
Sbjct: 1 MATSRRVSRVSSLIKREVSLMLMS------------GIKDDRVGAGMVSVTDVDVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G + + + GL+S YVRS+LG R++LR TPE+ F+ED S ERG++V+
Sbjct: 49 HAKIFVSIYGTEEARAETMEGLQSATPYVRSELGHRIRLRRTPEVVFLEDRSIERGTQVL 108
Query: 184 AILDRIKAEKEAAKSKNKEQFESPDLPEDERDWEGDDPD 222
++++R+ E+ ++KEQ DL E+E D D PD
Sbjct: 109 SLINRLTEER-----QSKEQT-GADL-EEEIDELADIPD 140
>gi|428200734|ref|YP_007079323.1| ribosome-binding factor A [Pleurocapsa sp. PCC 7327]
gi|427978166|gb|AFY75766.1| ribosome-binding factor A [Pleurocapsa sp. PCC 7327]
Length = 134
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 82/127 (64%), Gaps = 12/127 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA+ RRV V+ I+RE+S MLL + + DR + + +++DV+VS DLQ
Sbjct: 1 MADNRRVSRVSSLIKREVSQMLLNE------------IKDDRVGAGMVSVTDVDVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K+YVS++G + K +AGLKS +VR +LG+R++LR TPE+ F+ED S ERG R +
Sbjct: 49 HAKIYVSIYGTEAAKAETMAGLKSSTAFVRRELGQRIRLRRTPEVVFVEDRSLERGDRTL 108
Query: 184 AILDRIK 190
+L++I+
Sbjct: 109 HLLNQIR 115
>gi|409992877|ref|ZP_11276043.1| ribosome-binding factor A [Arthrospira platensis str. Paraca]
gi|291565861|dbj|BAI88133.1| ribosome-binding factor A [Arthrospira platensis NIES-39]
gi|409936252|gb|EKN77750.1| ribosome-binding factor A [Arthrospira platensis str. Paraca]
Length = 137
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 86/148 (58%), Gaps = 14/148 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV VA I+RE+S +LL D + DR + + +I++VEVS DLQ
Sbjct: 1 MATDRRVSRVASLIKREVSQVLLYD------------IKDDRVGTGMVSITEVEVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G + + + GL+S Y+RS LG+ ++LR TPE+ F+ED S ERG ++I
Sbjct: 49 HAKIFVSIYGTEEARRSTMEGLRSATGYIRSHLGKHIRLRRTPEVVFLEDRSLERGDKII 108
Query: 184 AILDRIKAEKEAAKSKNKEQFESPDLPE 211
+L++I E + S E D PE
Sbjct: 109 DLLNQISHEHQ--NSDTAEDNAQGDYPE 134
>gi|428216524|ref|YP_007100989.1| ribosome-binding factor A [Pseudanabaena sp. PCC 7367]
gi|427988306|gb|AFY68561.1| Ribosome-binding factor A [Pseudanabaena sp. PCC 7367]
Length = 181
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 91/149 (61%), Gaps = 17/149 (11%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV VA+ I+RE+S MLL + + DR +T+++ VEVS DLQ
Sbjct: 1 MATSRRVARVAELIKREVSTMLLHE------------IKDDRVGMGMTSVTAVEVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G + + + GL+S +VR +LG+R+ LR TPEI F ED SFE G++V+
Sbjct: 49 HAKIFVSIYGTEEARIETMEGLESAKGFVRRELGQRLSLRRTPEILFKEDRSFEEGTKVL 108
Query: 184 AILDRI---KAEKEAA--KSKNKEQFESP 207
++++++ +AEKE + EQ E+P
Sbjct: 109 SLINKLSYERAEKEETEPEQSESEQLETP 137
>gi|56751167|ref|YP_171868.1| ribosome-binding factor A [Synechococcus elongatus PCC 6301]
gi|81299166|ref|YP_399374.1| ribosome-binding factor A [Synechococcus elongatus PCC 7942]
gi|61214698|sp|Q5N2X2.1|RBFA_SYNP6 RecName: Full=Ribosome-binding factor A
gi|123557478|sp|Q31RD2.1|RBFA_SYNE7 RecName: Full=Ribosome-binding factor A
gi|56686126|dbj|BAD79348.1| ribosome binding factor A [Synechococcus elongatus PCC 6301]
gi|81168047|gb|ABB56387.1| ribosome-binding factor A [Synechococcus elongatus PCC 7942]
Length = 137
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 83/126 (65%), Gaps = 12/126 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV+ VA I+RE+S ML++ + DR + + +++DV VS DLQ
Sbjct: 1 MATNRRVERVASLIKREVSQMLMS------------GIKDDRVGAGMVSVTDVVVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G K + GLKS A YVRS+LG+R++LR TPE+ F+ED+ ERG++VI
Sbjct: 49 HTKIFVSIYGTPEAKAETMEGLKSAASYVRSELGQRVRLRRTPEVIFVEDKGLERGTQVI 108
Query: 184 AILDRI 189
++L+++
Sbjct: 109 SLLEQL 114
>gi|443313181|ref|ZP_21042793.1| ribosome-binding factor A [Synechocystis sp. PCC 7509]
gi|442776586|gb|ELR86867.1| ribosome-binding factor A [Synechocystis sp. PCC 7509]
Length = 139
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 86/132 (65%), Gaps = 12/132 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV VA+ I+RE+S ML+ D + DR + L +++DV VS DLQ
Sbjct: 1 MATNRRVSRVAELIKREVSQMLIHD------------IKDDRVGAGLVSVTDVVVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VSV+G + K +AGLKS YVR++LG+R++LR TPE+ F ED S ERG++V+
Sbjct: 49 HAKIFVSVYGSEEAKIETMAGLKSATGYVRTELGQRVRLRRTPEVIFQEDPSIERGTKVL 108
Query: 184 AILDRIKAEKEA 195
++L+++ ++ A
Sbjct: 109 SLLNQLNHDRPA 120
>gi|423064176|ref|ZP_17052966.1| ribosome-binding factor A [Arthrospira platensis C1]
gi|406714347|gb|EKD09514.1| ribosome-binding factor A [Arthrospira platensis C1]
Length = 144
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 89/149 (59%), Gaps = 13/149 (8%)
Query: 61 VKCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSA 120
V MA RRV VA I+RE+S +LL D + DR + + +I++VEVS
Sbjct: 5 VMVMATDRRVSRVASLIKREVSQVLLYD------------IKDDRVGTGMVSITEVEVSG 52
Query: 121 DLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGS 180
DLQ K++VS++G + + + GL+S Y+RS LG+ ++LR TPE+ F+ED S ERG
Sbjct: 53 DLQHAKIFVSIYGTEEARRSTMEGLRSATGYIRSHLGKHIRLRRTPEVVFLEDRSLERGD 112
Query: 181 RVIAILDRIKAE-KEAAKSKNKEQFESPD 208
++I +L++I E K + + + Q + P+
Sbjct: 113 KIIELLNQISHEHKNSDTAGDTTQEDDPE 141
>gi|390441507|ref|ZP_10229572.1| Ribosome-binding factor A [Microcystis sp. T1-4]
gi|389835147|emb|CCI33698.1| Ribosome-binding factor A [Microcystis sp. T1-4]
Length = 130
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 86/130 (66%), Gaps = 12/130 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MAN RRV V+ I+RE+S MLL + + DR + + +++DV++S DLQ
Sbjct: 1 MANDRRVSRVSSLIKREVSQMLLME------------IKDDRVGAGMVSVTDVDLSHDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
+++VS++G+ K +AGLK+ A +VR +LG+R++LR TPE+ F+ED S ERG +++
Sbjct: 49 HARIFVSIYGNQDAKAETMAGLKAAAGFVRRELGQRIRLRRTPEVVFLEDSSLERGDQML 108
Query: 184 AILDRIKAEK 193
+LD IK+++
Sbjct: 109 HLLDHIKSDR 118
>gi|334120627|ref|ZP_08494706.1| Ribosome-binding factor A [Microcoleus vaginatus FGP-2]
gi|333456229|gb|EGK84864.1| Ribosome-binding factor A [Microcoleus vaginatus FGP-2]
Length = 145
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 84/131 (64%), Gaps = 12/131 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RR++ VA I+RE+S MLL + DR + + +++DV VS DLQ
Sbjct: 1 MATNRRIERVASLIKREVSLMLLN------------GIKDDRVGAGMVSVTDVIVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G D K + GLKS YVR+QLG+R++LR TPE+ F+ED S ERG +++
Sbjct: 49 HTKIFVSIYGTDEAKAETMEGLKSATSYVRNQLGQRVQLRRTPEVIFLEDHSLERGDKML 108
Query: 184 AILDRIKAEKE 194
+L+++ A+++
Sbjct: 109 ILLNQLSADRK 119
>gi|300865260|ref|ZP_07110074.1| Ribosome-binding factor A [Oscillatoria sp. PCC 6506]
gi|300336733|emb|CBN55224.1| Ribosome-binding factor A [Oscillatoria sp. PCC 6506]
Length = 140
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 83/131 (63%), Gaps = 12/131 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV+ V+ I+RE+S +LL + DR + + +++DV+VS DLQ
Sbjct: 1 MATSRRVERVSSLIKREVSLLLLN------------GIKDDRVGAGIVSVTDVDVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G D K +AGLKS YVRS+LG R+ LR TPE+ F+ED S ERG +++
Sbjct: 49 HAKIFVSIYGTDEAKAETMAGLKSATGYVRSELGHRVGLRRTPEVVFLEDHSLERGDKML 108
Query: 184 AILDRIKAEKE 194
+L+++ E++
Sbjct: 109 LLLNKLSQERK 119
>gi|414076659|ref|YP_006995977.1| ribosome-binding factor A [Anabaena sp. 90]
gi|413970075|gb|AFW94164.1| ribosome-binding factor A [Anabaena sp. 90]
Length = 132
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 83/130 (63%), Gaps = 12/130 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV VA+ I+RE+S ML + DR + +++DV+VS DLQ
Sbjct: 1 MATNRRVSRVAELIKREVSQMLFN------------GIKDDRVGMGMVSVTDVDVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
++VS++G + K +AGLKS YVRS+LG R++LR TPE+ F+ED S ERG++V+
Sbjct: 49 HATIFVSIYGTEEAKTETMAGLKSATGYVRSELGSRVRLRRTPEVIFVEDRSIERGTKVL 108
Query: 184 AILDRIKAEK 193
++L++++ ++
Sbjct: 109 SLLNQLEEKR 118
>gi|359463354|ref|ZP_09251917.1| ribosome-binding factor A [Acaryochloris sp. CCMEE 5410]
Length = 138
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 86/140 (61%), Gaps = 12/140 (8%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV VA+ I+RE+S MLL ++ DR S + +++ V++S DLQ
Sbjct: 1 MATGRRVSRVAELIKREVSQMLL------------HSIKDDRVGSGMISVTAVDLSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G D + +AGL+S YVR QLG R+ LR TPE+ F ED SFE G++V+
Sbjct: 49 HAKIFVSIYGTDEARAETMAGLESATGYVRKQLGHRIHLRRTPEVIFCEDRSFEEGNQVL 108
Query: 184 AILDRIKAEKEAAKSKNKEQ 203
++L ++ E++ + + E+
Sbjct: 109 SLLHKLDHERQNKPATSTEK 128
>gi|158336219|ref|YP_001517393.1| ribosome-binding factor A [Acaryochloris marina MBIC11017]
gi|189039525|sp|B0CDK8.1|RBFA_ACAM1 RecName: Full=Ribosome-binding factor A
gi|158306460|gb|ABW28077.1| ribosome-binding factor A [Acaryochloris marina MBIC11017]
Length = 138
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 86/140 (61%), Gaps = 12/140 (8%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV VA+ I+RE+S MLL ++ DR S + +++ V++S DLQ
Sbjct: 1 MATGRRVSRVAELIKREVSQMLLH------------SIKDDRVGSGMISVTAVDLSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G D + +AGL+S YVR QLG R+ LR TPE+ F ED SFE G++V+
Sbjct: 49 HAKIFVSIYGTDEARAETMAGLESATGYVRKQLGHRIHLRRTPEVIFCEDRSFEEGNQVL 108
Query: 184 AILDRIKAEKEAAKSKNKEQ 203
++L ++ E++ + + E+
Sbjct: 109 SLLHKLDHERQNKPAASTEK 128
>gi|428222703|ref|YP_007106873.1| ribosome-binding factor A [Synechococcus sp. PCC 7502]
gi|427996043|gb|AFY74738.1| ribosome-binding factor A [Synechococcus sp. PCC 7502]
Length = 135
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 92/152 (60%), Gaps = 20/152 (13%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV VA+ I+RE+S MLL + + DR + + ++++V VS DLQ
Sbjct: 1 MATSRRVARVAELIKREVSVMLLQE------------IKDDRVGAGMVSVTEVNVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G + K +AGL + ++R ++G+R+ LR TPE+ F ED SFERGS+V+
Sbjct: 49 HTKIFVSIYGSEEAKAETMAGLTAATGFIRREIGQRLALRRTPEVIFQEDRSFERGSKVL 108
Query: 184 AILDRIKAEKEAAKSKNKEQFESPDLPEDERD 215
++L+++ S+ +EQ ++ ED+ D
Sbjct: 109 SLLNQL--------SREREQKSISEIEEDDHD 132
>gi|113476475|ref|YP_722536.1| ribosome-binding factor A [Trichodesmium erythraeum IMS101]
gi|123056530|sp|Q110L1.1|RBFA_TRIEI RecName: Full=Ribosome-binding factor A
gi|110167523|gb|ABG52063.1| ribosome-binding factor A [Trichodesmium erythraeum IMS101]
Length = 137
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 84/131 (64%), Gaps = 12/131 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RR+ +A I++E+S MLL + +R + +++DV+VS DLQ
Sbjct: 1 MAIARRISRIASLIKQEISQMLL------------HGIKDNRVGIGMVSVTDVDVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
KV+VS++G D + +AGL+S YVRS+LG+R+++R TPE+ F+ED S ERG+ ++
Sbjct: 49 HAKVFVSIYGSDEVRSQTMAGLRSATGYVRSELGKRIRMRRTPEVIFVEDRSLERGTEIL 108
Query: 184 AILDRIKAEKE 194
++L+++ E++
Sbjct: 109 SLLNKLSQERQ 119
>gi|22299172|ref|NP_682419.1| ribosome-binding factor A [Thermosynechococcus elongatus BP-1]
gi|29427713|sp|Q8DIF9.1|RBFA_THEEB RecName: Full=Ribosome-binding factor A
gi|22295354|dbj|BAC09181.1| ribosome binding factor A [Thermosynechococcus elongatus BP-1]
Length = 126
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 88/134 (65%), Gaps = 12/134 (8%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV VA+ I+RE+S +L+ + + +R + + +++DVEVS DLQ
Sbjct: 1 MATERRVARVAELIKREVSQLLMYE------------IRDERVGAGMVSVTDVEVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++ + + +AGLK+ + +VR +LG+R++LR TPE+ FIED S ERGSRV+
Sbjct: 49 HAKIFVSIYSTEEVRRSTMAGLKAASGFVRRELGQRIRLRRTPEVVFIEDRSLERGSRVL 108
Query: 184 AILDRIKAEKEAAK 197
A+L++I ++ ++
Sbjct: 109 ALLNQIGQQQSTSE 122
>gi|443322972|ref|ZP_21051984.1| ribosome-binding factor A [Gloeocapsa sp. PCC 73106]
gi|442787276|gb|ELR96997.1| ribosome-binding factor A [Gloeocapsa sp. PCC 73106]
Length = 134
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 84/140 (60%), Gaps = 12/140 (8%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV V+ QIQRE+S ML+ + + DR + + +++DV+VS DLQ
Sbjct: 1 MATDRRVARVSSQIQREISQMLMGE------------IKDDRVGAGMVSVTDVQVSNDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G K+ + GLK+ +VR L +RM+LR PE+ F+ED S ERG R++
Sbjct: 49 HAKIFVSIYGTPEAKKETMEGLKACKAFVRQLLAQRMRLRRVPEVVFLEDNSLERGDRML 108
Query: 184 AILDRIKAEKEAAKSKNKEQ 203
+L++I E+E + E+
Sbjct: 109 NLLNQISQEREQKDQTDGEE 128
>gi|376007039|ref|ZP_09784245.1| 30s ribosome binding factor A [Arthrospira sp. PCC 8005]
gi|375324650|emb|CCE19998.1| 30s ribosome binding factor A [Arthrospira sp. PCC 8005]
Length = 137
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 87/146 (59%), Gaps = 13/146 (8%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV VA I+RE+S +LL D + DR + +I++VEVS DLQ
Sbjct: 1 MATDRRVSRVASLIKREVSQVLLYD------------IKDDRVGIGMVSITEVEVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G + + + GL+S Y+RS LG+ ++LR TPE+ F+ED S ERG ++I
Sbjct: 49 HAKIFVSIYGTEEARRSTMEGLRSATGYIRSHLGKHIRLRRTPEVVFLEDRSLERGDKII 108
Query: 184 AILDRIKAE-KEAAKSKNKEQFESPD 208
+L++I E K + + + Q + P+
Sbjct: 109 ELLNQISHEHKNSDTAGDTTQEDDPE 134
>gi|86605483|ref|YP_474246.1| ribosome-binding factor A [Synechococcus sp. JA-3-3Ab]
gi|123507268|sp|Q2JW85.1|RBFA_SYNJA RecName: Full=Ribosome-binding factor A
gi|86554025|gb|ABC98983.1| ribosome-binding factor A [Synechococcus sp. JA-3-3Ab]
Length = 149
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 93/160 (58%), Gaps = 16/160 (10%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV VA+ I+RE+S +LL++ + DR + + +I DVEVS DLQ
Sbjct: 1 MATARRVARVAELIKREVSQILLSE------------IKDDRVGAGMVSIVDVEVSNDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
+++VS++GD+ ++ + GL S +VR ++G+R+ LR P + F++D S ERGSRV+
Sbjct: 49 NARIFVSIYGDEAAQQQTMEGLASATPFVRREIGQRLGLRRVPTVVFLQDRSLERGSRVL 108
Query: 184 AILDRIKAEKEAAKSKNKEQFESPDLPEDERDWEGDDPDE 223
A+L++++ EA + + P + D G + DE
Sbjct: 109 ALLNQLRQPAEAQQQEGSH----PGVEGRMADTPGGEEDE 144
>gi|16331339|ref|NP_442067.1| ribosome-binding factor A [Synechocystis sp. PCC 6803]
gi|383323081|ref|YP_005383934.1| ribosome-binding factor A [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383326250|ref|YP_005387103.1| ribosome-binding factor A [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383492134|ref|YP_005409810.1| ribosome-binding factor A [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384437402|ref|YP_005652126.1| ribosome-binding factor A [Synechocystis sp. PCC 6803]
gi|451815493|ref|YP_007451945.1| hypothetical protein MYO_121930 [Synechocystis sp. PCC 6803]
gi|3914560|sp|Q55625.1|RBFA_SYNY3 RecName: Full=Ribosome-binding factor A
gi|1001511|dbj|BAA10137.1| sll0754 [Synechocystis sp. PCC 6803]
gi|339274434|dbj|BAK50921.1| ribosome-binding factor A [Synechocystis sp. PCC 6803]
gi|359272400|dbj|BAL29919.1| ribosome-binding factor A [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359275570|dbj|BAL33088.1| ribosome-binding factor A [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359278740|dbj|BAL36257.1| ribosome-binding factor A [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|407961282|dbj|BAM54522.1| ribosome-binding factor A [Synechocystis sp. PCC 6803]
gi|451781462|gb|AGF52431.1| hypothetical protein MYO_121930 [Synechocystis sp. PCC 6803]
Length = 133
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 79/126 (62%), Gaps = 12/126 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV V+ I+RE+S MLL + + DR + + ++++VEVS DLQ
Sbjct: 1 MATSRRVSRVSSLIKREVSQMLLHE------------IKDDRVGTGMVSVTEVEVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G K +AGL S A +VR +LG+RM+LR TPE+ F+ED S ERG +++
Sbjct: 49 HAKIFVSIYGSPEAKASTMAGLHSAAPFVRRELGQRMRLRRTPEVSFLEDRSLERGDKIL 108
Query: 184 AILDRI 189
+L+ +
Sbjct: 109 NLLNNL 114
>gi|443325844|ref|ZP_21054521.1| ribosome-binding factor A [Xenococcus sp. PCC 7305]
gi|442794557|gb|ELS03967.1| ribosome-binding factor A [Xenococcus sp. PCC 7305]
Length = 145
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 82/131 (62%), Gaps = 12/131 (9%)
Query: 59 KTVKCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEV 118
K +K +AN RRV V+ I+RE+S ML+ + DR S + +I+DV+V
Sbjct: 9 KRIKVVANSRRVSRVSSLIKREVSQMLIN------------GIKDDRVGSGMVSITDVDV 56
Query: 119 SADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFER 178
S DLQ ++VS++G + +E + GL++ +VR +LG+R++LR +PE+ F+ED S ER
Sbjct: 57 SGDLQHATIFVSIYGTETAREETMEGLRASQHFVRRELGQRIRLRRSPEVTFLEDRSLER 116
Query: 179 GSRVIAILDRI 189
G +I +L++I
Sbjct: 117 GDEMIHLLNKI 127
>gi|282895926|ref|ZP_06303966.1| Ribosome-binding factor A [Raphidiopsis brookii D9]
gi|281199171|gb|EFA74040.1| Ribosome-binding factor A [Raphidiopsis brookii D9]
Length = 120
Score = 99.4 bits (246), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 75/119 (63%), Gaps = 12/119 (10%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV VA+ I+RE+S MLL + DR + +++DV+VS DLQ
Sbjct: 1 MATNRRVSRVAELIKREVSQMLL------------HGIKDDRVGVGMVSVTDVDVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
K++VS++G + K +AGLKS YVRS+LG R++LR TPE+ F+ED S ERG++V
Sbjct: 49 HAKIFVSIYGTEEAKAQTMAGLKSATGYVRSELGARVRLRRTPEVIFVEDRSLERGTKV 107
>gi|282899763|ref|ZP_06307726.1| Ribosome-binding factor A [Cylindrospermopsis raciborskii CS-505]
gi|281195378|gb|EFA70312.1| Ribosome-binding factor A [Cylindrospermopsis raciborskii CS-505]
Length = 126
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 75/119 (63%), Gaps = 12/119 (10%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV VA+ I+RE+S ML+ + DR + +++DV+VS DLQ
Sbjct: 1 MATNRRVSRVAELIKREVSQMLI------------HGIKDDRVGVGMVSVTDVDVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
K++VS++G + K +AGLKS YVRS+LG R++LR TPE+ F+ED S ERG++V
Sbjct: 49 HAKIFVSIYGTEEAKAETMAGLKSATGYVRSELGARVRLRRTPEVIFVEDHSLERGTKV 107
>gi|434387540|ref|YP_007098151.1| ribosome-binding factor A [Chamaesiphon minutus PCC 6605]
gi|428018530|gb|AFY94624.1| ribosome-binding factor A [Chamaesiphon minutus PCC 6605]
Length = 146
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 92/157 (58%), Gaps = 12/157 (7%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
M N RRV VA+ I+RE+S M+L D + DR + + +++ V+V+ DLQ
Sbjct: 1 MTNTRRVSRVAELIKREVSQMILFD------------IKDDRVGAGMVSVTAVDVAGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G D + + GLK+ YVRS+LG+R++LR TP + F+ED+SF+R + VI
Sbjct: 49 HTKIFVSIYGSDEVRAETMEGLKAVTGYVRSELGKRVRLRRTPTVIFVEDKSFDRATSVI 108
Query: 184 AILDRIKAEKEAAKSKNKEQFESPDLPEDERDWEGDD 220
++++++ +++ + E + D R E D
Sbjct: 109 SLINQLSSKRAESVESAAETVPASDEESISRSTESSD 145
>gi|126656851|ref|ZP_01728029.1| ribosome-binding factor A [Cyanothece sp. CCY0110]
gi|126621689|gb|EAZ92398.1| ribosome-binding factor A [Cyanothece sp. CCY0110]
Length = 130
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 79/127 (62%), Gaps = 12/127 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MAN RRV V+ I+RE+S MLL D + DR + + +++DV++S DLQ
Sbjct: 1 MANSRRVSRVSSLIKREVSQMLLFD------------IKDDRVGAGMVSVTDVDLSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G + K + GLKS YVR +L +R++LR PE+RF ED ERG +++
Sbjct: 49 HAKIFVSIYGTEEAKMETMEGLKSSEGYVRKELAQRIRLRRAPEVRFFEDHGIERGDKML 108
Query: 184 AILDRIK 190
+L++I+
Sbjct: 109 HLLNKIR 115
>gi|428769038|ref|YP_007160828.1| ribosome-binding factor A [Cyanobacterium aponinum PCC 10605]
gi|428683317|gb|AFZ52784.1| ribosome-binding factor A [Cyanobacterium aponinum PCC 10605]
Length = 125
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 79/126 (62%), Gaps = 12/126 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MAN RRV+ V+ I++E+S ML++ + DR + + +I DVE+S DLQ
Sbjct: 1 MANSRRVEKVSSLIRKEISQMLIS------------GIKDDRVGAGMVSILDVEMSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
KV+VS++G K + GLK+ +VR +LG R++LR TPEIRF+ D S E+G ++I
Sbjct: 49 HAKVFVSIYGTPEAKAETMEGLKACTPFVRRELGHRIRLRHTPEIRFVHDSSLEKGDQII 108
Query: 184 AILDRI 189
+++RI
Sbjct: 109 DLINRI 114
>gi|86607701|ref|YP_476463.1| ribosome-binding factor A [Synechococcus sp. JA-2-3B'a(2-13)]
gi|123504067|sp|Q2JPS6.1|RBFA_SYNJB RecName: Full=Ribosome-binding factor A
gi|86556243|gb|ABD01200.1| ribosome-binding factor A [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 144
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 96/158 (60%), Gaps = 15/158 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV VA+ I+RE+S +LL++ + DR + + +I DVEVS DLQ
Sbjct: 1 MATARRVARVAELIKREVSQILLSE------------IKDDRVGAGMVSIVDVEVSNDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
+++VS++GD+ + A+ GL + +VR ++G+R+ LR P + F++D S ERGSRV+
Sbjct: 49 NARIFVSIYGDETAQHQAMEGLAAATPFVRREIGQRLSLRRVPTVVFLQDRSLERGSRVL 108
Query: 184 AILDRIKAEKEA-AKSKNKEQFESPDLPEDERDWEGDD 220
A+L++++ EA A++ +E E + E E + G +
Sbjct: 109 ALLNQLRPTFEAKAQTGVEEPLE--NTAEGEENPSGGE 144
>gi|218438840|ref|YP_002377169.1| ribosome-binding factor A [Cyanothece sp. PCC 7424]
gi|226736641|sp|B7KDJ9.1|RBFA_CYAP7 RecName: Full=Ribosome-binding factor A
gi|218171568|gb|ACK70301.1| ribosome-binding factor A [Cyanothece sp. PCC 7424]
Length = 131
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 83/132 (62%), Gaps = 13/132 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV V+ I+RE+S MLL + DR + + +I+DV+VS DLQ
Sbjct: 1 MATDRRVSRVSSLIKREVSQMLL------------HGIKDDRVGAGMVSITDVDVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G ++ K + GLKS +VR +LG+R++LR TPE+ F+ED S ERG R +
Sbjct: 49 HAKIFVSIYGTEQAKAETMEGLKSSVGFVRRELGQRIRLRRTPEVVFLEDTSLERGDRTL 108
Query: 184 AILDRIK-AEKE 194
+L++++ A KE
Sbjct: 109 HLLNQLQDARKE 120
>gi|307150648|ref|YP_003886032.1| ribosome-binding factor A [Cyanothece sp. PCC 7822]
gi|306980876|gb|ADN12757.1| ribosome-binding factor A [Cyanothece sp. PCC 7822]
Length = 133
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 81/127 (63%), Gaps = 12/127 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV V+ I+RE+S MLL + + DR + + +++DV+VS DLQ
Sbjct: 1 MATDRRVSRVSSLIKREVSQMLLYE------------IKDDRVGAGMVSVTDVDVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G ++ K + GL+S A +VR +LG+R++LR TPEI F ED S ERG R +
Sbjct: 49 HAKIFVSIYGTEQAKAETMEGLRSSAGFVRRELGQRIRLRRTPEIVFFEDRSLERGDRTL 108
Query: 184 AILDRIK 190
+L++++
Sbjct: 109 HLLNQLR 115
>gi|172039587|ref|YP_001806088.1| ribosome-binding factor A [Cyanothece sp. ATCC 51142]
gi|354552153|ref|ZP_08971461.1| ribosome-binding factor A [Cyanothece sp. ATCC 51472]
gi|226723597|sp|B1WW94.1|RBFA_CYAA5 RecName: Full=Ribosome-binding factor A
gi|171701041|gb|ACB54022.1| ribosome-binding factor A [Cyanothece sp. ATCC 51142]
gi|353555475|gb|EHC24863.1| ribosome-binding factor A [Cyanothece sp. ATCC 51472]
Length = 129
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 78/127 (61%), Gaps = 12/127 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MAN RRV V+ I+RE+S MLL D + DR + + +++DV++S DLQ
Sbjct: 1 MANSRRVSRVSSLIKREVSQMLLFD------------IKDDRVGAGMVSVTDVDLSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G + K + GLKS YVR +L +R++LR PE+RF ED ERG +++
Sbjct: 49 HAKIFVSIYGTEEAKVETMEGLKSSEGYVRKELAQRIRLRRAPEVRFFEDHGIERGDKML 108
Query: 184 AILDRIK 190
+L+ I+
Sbjct: 109 HLLNEIR 115
>gi|254424610|ref|ZP_05038328.1| ribosome-binding factor A [Synechococcus sp. PCC 7335]
gi|196192099|gb|EDX87063.1| ribosome-binding factor A [Synechococcus sp. PCC 7335]
Length = 114
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 70/101 (69%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLR 163
DR + + +I+DV+V+ DLQ K++VS++G D K +AGLK+ YVR QLG+RMKLR
Sbjct: 9 DRVGAGMVSITDVDVAGDLQHAKIFVSIYGTDEAKAETMAGLKAAEGYVRRQLGQRMKLR 68
Query: 164 LTPEIRFIEDESFERGSRVIAILDRIKAEKEAAKSKNKEQF 204
TPE+ F ED SF+ + V+ +L++I AE++A S + ++
Sbjct: 69 RTPEVTFKEDRSFDLATNVLNVLNQISAERKAGDSIDAQEL 109
>gi|416391988|ref|ZP_11685818.1| Ribosome-binding factor A [Crocosphaera watsonii WH 0003]
gi|357263736|gb|EHJ12705.1| Ribosome-binding factor A [Crocosphaera watsonii WH 0003]
Length = 147
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 78/133 (58%), Gaps = 13/133 (9%)
Query: 58 RKTVKCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVE 117
RK K MAN RRV V+ I+RE+S MLL D + DR S + ++++V
Sbjct: 14 RKGAK-MANSRRVSRVSSLIKREISQMLLFD------------IKDDRVGSGMVSVTNVY 60
Query: 118 VSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFE 177
VS DLQ K++VS++G + K + GLKS YVR +L R++LR PE+ F ED E
Sbjct: 61 VSGDLQHAKIFVSIYGTEEAKIETMEGLKSSEGYVRKELAHRIRLRRAPEVTFFEDHGIE 120
Query: 178 RGSRVIAILDRIK 190
RG +++ +LD I+
Sbjct: 121 RGDKMLHLLDEIR 133
>gi|119486756|ref|ZP_01620731.1| ribosome-binding factor A [Lyngbya sp. PCC 8106]
gi|119456049|gb|EAW37182.1| ribosome-binding factor A [Lyngbya sp. PCC 8106]
Length = 142
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 80/126 (63%), Gaps = 12/126 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
M RRV VA I+RE+S +LL + + DR S + +I+DV V+ DLQ
Sbjct: 1 MPTDRRVSRVAALIKREVSQILLQE------------VKDDRVGSGMVSITDVNVAGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
VK++VS++G + ++ + GL++ Y+RS LG+R++LR TPE+ F+ED S ERG +++
Sbjct: 49 HVKIFVSIYGTEEARKETMEGLRAATGYIRSSLGQRVRLRRTPEVLFLEDRSLERGDKML 108
Query: 184 AILDRI 189
++L+ I
Sbjct: 109 SLLNHI 114
>gi|67922611|ref|ZP_00516117.1| Ribosome-binding factor A [Crocosphaera watsonii WH 8501]
gi|67855539|gb|EAM50792.1| Ribosome-binding factor A [Crocosphaera watsonii WH 8501]
Length = 147
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 75/127 (59%), Gaps = 12/127 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MAN RRV V+ I+RE+S MLL D + DR S + ++++V VS DLQ
Sbjct: 19 MANSRRVSRVSSLIKREISQMLLFD------------IKDDRVGSGMVSVTNVYVSGDLQ 66
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G + K + GLKS YVR +L R++LR PE+ F ED ERG +++
Sbjct: 67 HAKIFVSIYGTEEAKIETMEGLKSSEGYVRKELAHRIRLRRAPEVTFFEDHGIERGDKML 126
Query: 184 AILDRIK 190
+LD I+
Sbjct: 127 HLLDEIR 133
>gi|427723027|ref|YP_007070304.1| ribosome-binding factor A [Leptolyngbya sp. PCC 7376]
gi|427354747|gb|AFY37470.1| ribosome-binding factor A [Leptolyngbya sp. PCC 7376]
Length = 128
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 80/127 (62%), Gaps = 12/127 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MAN RRV V+ I+RE+S ML+ D + DR + + +I+DVEVS DLQ
Sbjct: 1 MANNRRVSKVSSLIKREISMMLMQD------------IKDDRVGAGMVSITDVEVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
KV+VS++G + + + GL++ +VR LG+R++LR +P+I FIED S E G R+I
Sbjct: 49 HAKVFVSIYGSEEARTETMEGLRASQGFVRRTLGKRVRLRRSPDIHFIEDRSLEEGDRMI 108
Query: 184 AILDRIK 190
++++++
Sbjct: 109 HLINKLE 115
>gi|302832513|ref|XP_002947821.1| hypothetical protein VOLCADRAFT_88099 [Volvox carteri f.
nagariensis]
gi|300267169|gb|EFJ51354.1| hypothetical protein VOLCADRAFT_88099 [Volvox carteri f.
nagariensis]
Length = 2634
Score = 96.3 bits (238), Expect = 9e-18, Method: Composition-based stats.
Identities = 49/106 (46%), Positives = 71/106 (66%), Gaps = 1/106 (0%)
Query: 88 DKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKS 147
D+V+Q A+ PE G D LS++ +I++ VS DLQVVKV+VSV+ DD GK VA+ L
Sbjct: 86 DQVIQAAICPERKGGGD-MLSAVASITNTYVSNDLQVVKVFVSVYSDDYGKRVAMQNLAR 144
Query: 148 KAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRIKAEK 193
YVR +G+R++LR TPE+RF+ D+S E V+ +L R + E+
Sbjct: 145 LEPYVRVLIGQRVRLRRTPEVRFVYDDSEEEADLVVRVLGRAEVER 190
>gi|159902668|ref|YP_001550012.1| ribosome-binding factor A [Prochlorococcus marinus str. MIT 9211]
gi|238687122|sp|A9BCX0.1|RBFA_PROM4 RecName: Full=Ribosome-binding factor A
gi|159887844|gb|ABX08058.1| Ribosome-binding factor A [Prochlorococcus marinus str. MIT 9211]
Length = 130
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 89/141 (63%), Gaps = 17/141 (12%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA+ RRV+ V+ I++E+S +LL + +R SS+ TI++VEVS DLQ
Sbjct: 1 MAHGRRVEKVSALIRKEMSQLLLD------------GIRDERVASSMVTITEVEVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS+FG D +E A +GL++ + ++R +LGRR+++R PEI F D+ E+GS V+
Sbjct: 49 HCKIFVSIFGQDPKREEAFSGLQAASGFLRGELGRRLQMRRAPEIVFKLDKGMEKGSSVL 108
Query: 184 AILDRIKAEKEAAKSKNKEQF 204
+L +++ E+ KNK++
Sbjct: 109 DLLGKLEEER-----KNKDEI 124
>gi|428774137|ref|YP_007165925.1| ribosome-binding factor A [Cyanobacterium stanieri PCC 7202]
gi|428688416|gb|AFZ48276.1| ribosome-binding factor A [Cyanobacterium stanieri PCC 7202]
Length = 126
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 79/126 (62%), Gaps = 12/126 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MAN RR++ V+ I+RE+S ML+++ + DR + + +I+ VEVS DLQ
Sbjct: 1 MANSRRIEKVSSLIKREVSQMLISE------------IKDDRVGAGMVSITHVEVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G K + GLK+ +VR LG+++ LR TPEIRF ED S E+G ++I
Sbjct: 49 HAKIFVSIYGTAEAKRETMEGLKACTPFVRRSLGQKISLRHTPEIRFREDSSLEKGDQLI 108
Query: 184 AILDRI 189
+++RI
Sbjct: 109 QLINRI 114
>gi|427704158|ref|YP_007047380.1| ribosome-binding factor A [Cyanobium gracile PCC 6307]
gi|427347326|gb|AFY30039.1| ribosome-binding factor A [Cyanobium gracile PCC 6307]
Length = 145
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 80/123 (65%), Gaps = 12/123 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV+ VA I+RE+S++L++ + +R + ++++VEV+ DLQ
Sbjct: 1 MAQSRRVERVAALIRREVSELLMS------------GIKDERVHHGMVSVTNVEVAGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
+++VS+FG +EVA+AGL++ + YV+ +LGRR+K+R TPE+ F+ D E+G+ V+
Sbjct: 49 HCRIFVSIFGSAEDREVAMAGLQAASSYVKGELGRRLKMRRTPEVVFVLDRGLEKGNTVL 108
Query: 184 AIL 186
+L
Sbjct: 109 GLL 111
>gi|443476694|ref|ZP_21066586.1| Ribosome-binding factor A [Pseudanabaena biceps PCC 7429]
gi|443018291|gb|ELS32567.1| Ribosome-binding factor A [Pseudanabaena biceps PCC 7429]
Length = 127
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 84/135 (62%), Gaps = 12/135 (8%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV VA+ I+RE+S+MLL D + DR + +++D E+S DLQ
Sbjct: 1 MATTRRVARVAELIKREVSNMLLKD------------IKDDRVGMGMVSVTDAELSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
VK++VS++G + ++ + L S +++ ++G+R+ LR PEI F ED SFERG +V+
Sbjct: 49 HVKIFVSIYGTEEARQQTMEALASATGFIKREVGQRLALRRVPEIVFHEDRSFERGVKVL 108
Query: 184 AILDRIKAEKEAAKS 198
++++++ E+E +S
Sbjct: 109 SLINQLSREREEKES 123
>gi|218246068|ref|YP_002371439.1| ribosome-binding factor A [Cyanothece sp. PCC 8801]
gi|257059118|ref|YP_003137006.1| ribosome-binding factor A [Cyanothece sp. PCC 8802]
gi|226736642|sp|B7K2E7.1|RBFA_CYAP8 RecName: Full=Ribosome-binding factor A
gi|218166546|gb|ACK65283.1| ribosome-binding factor A [Cyanothece sp. PCC 8801]
gi|256589284|gb|ACV00171.1| ribosome-binding factor A [Cyanothece sp. PCC 8802]
Length = 128
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 79/127 (62%), Gaps = 12/127 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MAN RRV V+ I+RE+S MLL D + DR + + ++++V+VS DLQ
Sbjct: 1 MANSRRVSRVSSLIKREVSQMLLHD------------IKDDRVGAGMVSVTEVDVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
++VS++G ++ + + GLKS +VR +L RM+LR +PE+ F +D S ERG R++
Sbjct: 49 HATIFVSIYGSEQAQAETMEGLKSSTSFVRRELSHRMRLRRSPEVVFRQDHSLERGDRMV 108
Query: 184 AILDRIK 190
+L++IK
Sbjct: 109 HLLNQIK 115
>gi|318042498|ref|ZP_07974454.1| ribosome-binding factor A [Synechococcus sp. CB0101]
Length = 136
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 83/131 (63%), Gaps = 12/131 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV+ VA I+RE+S++L+ + DR + ++++VEV+ DLQ
Sbjct: 1 MAQGRRVERVAALIRREVSELLVN------------GIKDDRVSLGMVSVTNVEVAGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K+YVSV+G+ ++ A+AGL+S A YV+ +LGRR+ +R TPE+ F D E+G+ V+
Sbjct: 49 HCKIYVSVYGNPEVQQQALAGLRSAASYVKGELGRRLNMRRTPEVIFHLDRGIEKGTSVL 108
Query: 184 AILDRIKAEKE 194
+L++++ ++
Sbjct: 109 GLLNQLEQNRQ 119
>gi|428779297|ref|YP_007171083.1| ribosome-binding factor A [Dactylococcopsis salina PCC 8305]
gi|428693576|gb|AFZ49726.1| ribosome-binding factor A [Dactylococcopsis salina PCC 8305]
Length = 142
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 79/132 (59%), Gaps = 12/132 (9%)
Query: 62 KCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSAD 121
K MA RRV VA IQ+E+S ML++ + DR + + +++ V VS D
Sbjct: 10 KQMATSRRVARVASLIQQEVSQMLIS------------GIKDDRVGAGMVSVTAVNVSND 57
Query: 122 LQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSR 181
LQ K++VS++G K +AGL S YVR +LGRR++LR TPE+ F ED S E G R
Sbjct: 58 LQHAKIFVSIYGTQEAKAETMAGLHSSTAYVRRELGRRIRLRRTPEVVFHEDMSLELGDR 117
Query: 182 VIAILDRIKAEK 193
+++++++ A++
Sbjct: 118 TLSLINQLSAKR 129
>gi|37523601|ref|NP_926978.1| ribosome binding facror A [Gloeobacter violaceus PCC 7421]
gi|39931738|sp|Q7NE48.1|RBFA_GLOVI RecName: Full=Ribosome-binding factor A
gi|35214606|dbj|BAC91973.1| ribosome binding facror A [Gloeobacter violaceus PCC 7421]
Length = 129
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 80/130 (61%), Gaps = 11/130 (8%)
Query: 73 VAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVF 132
V + I+RE+SDMLL ++ R + L +++DVEV+ DL+ K++VS+F
Sbjct: 9 VGELIKREVSDMLLRGQIKD-----------PRVGAGLVSVTDVEVTGDLRQAKIFVSIF 57
Query: 133 GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRIKAE 192
G +++ + L +VR ++G R++LR TPEI F++D S ERG+R+ ++D I+AE
Sbjct: 58 GTPEAQKLTMMALAEVTGFVRQEIGHRIRLRYTPEIAFVQDRSLERGARITRLIDEIRAE 117
Query: 193 KEAAKSKNKE 202
+EA + +E
Sbjct: 118 EEARAAHKEE 127
>gi|428776596|ref|YP_007168383.1| ribosome-binding factor A [Halothece sp. PCC 7418]
gi|428690875|gb|AFZ44169.1| ribosome-binding factor A [Halothece sp. PCC 7418]
Length = 126
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 80/130 (61%), Gaps = 12/130 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV VA IQ+E+S ML+ + DR + + +++ V+VS DLQ
Sbjct: 1 MATSRRVARVASLIQQEVSQMLIN------------GIKDDRVGAGMVSVTAVDVSNDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G + K +AGLKS +VR +LG+R++LR TPE+ F ED S E G R +
Sbjct: 49 HAKIFVSIYGTEEAKTETMAGLKSSTAFVRRELGKRIRLRRTPEVVFHEDMSLELGDRTL 108
Query: 184 AILDRIKAEK 193
++++++ A++
Sbjct: 109 SLINQLSAKR 118
>gi|170076709|ref|YP_001733347.1| ribosome-binding factor A [Synechococcus sp. PCC 7002]
gi|238692796|sp|B1XLD1.1|RBFA_SYNP2 RecName: Full=Ribosome-binding factor A
gi|169884378|gb|ACA98091.1| ribosome-binding factor A [Synechococcus sp. PCC 7002]
Length = 131
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 80/127 (62%), Gaps = 12/127 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MAN RRV V+ I+RE+S ML+ D + DR + + +I++VEVS DLQ
Sbjct: 1 MANSRRVSKVSSLIKREVSLMLMQD------------IKDDRVGAGMVSITEVEVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G + + + GL++ +VR LG+R++LR +PE+ FIED S E G R+I
Sbjct: 49 HAKIFVSIYGSEEARAETMEGLRASQGFVRRTLGQRIRLRRSPEVLFIEDRSLEEGDRMI 108
Query: 184 AILDRIK 190
++++++
Sbjct: 109 HLINQLE 115
>gi|87125212|ref|ZP_01081058.1| Ribosome-binding factor A [Synechococcus sp. RS9917]
gi|86166981|gb|EAQ68242.1| Ribosome-binding factor A [Synechococcus sp. RS9917]
Length = 136
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 82/131 (62%), Gaps = 12/131 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV+ VA I+RE S++L+ + +R + +I++VEVS DLQ
Sbjct: 1 MAPGRRVERVAALIRRETSELLIH------------GIRDERVHQGMVSITEVEVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G+D K+ + GLK+ + Y+R +LGRR+++R PE+ F D E+G+ V+
Sbjct: 49 HCKIFVSIYGEDADKQNVLEGLKAASGYLRGELGRRLQMRRAPEVVFQLDRGIEKGTTVL 108
Query: 184 AILDRIKAEKE 194
+L+R++ E++
Sbjct: 109 HLLNRLEEERQ 119
>gi|443669098|ref|ZP_21134341.1| ribosome-binding factor A [Microcystis aeruginosa DIANCHI905]
gi|443330625|gb|ELS45330.1| ribosome-binding factor A [Microcystis aeruginosa DIANCHI905]
Length = 110
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 67/90 (74%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLR 163
DR + + +++DV++S DLQ +++VS++G+ K +AGLK+ A +VR +LG+R++LR
Sbjct: 9 DRVGAGMVSVTDVDLSHDLQHARIFVSIYGNKDAKAETMAGLKAAAGFVRRELGQRIRLR 68
Query: 164 LTPEIRFIEDESFERGSRVIAILDRIKAEK 193
TPE+ F+ED S ERG R++ +LD IK+++
Sbjct: 69 RTPEVVFLEDSSLERGDRMLHLLDHIKSDR 98
>gi|78213858|ref|YP_382637.1| ribosome-binding factor A [Synechococcus sp. CC9605]
gi|123577495|sp|Q3AH50.1|RBFA_SYNSC RecName: Full=Ribosome-binding factor A
gi|78198317|gb|ABB36082.1| ribosome-binding factor A [Synechococcus sp. CC9605]
Length = 140
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 83/131 (63%), Gaps = 12/131 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV+ VA I++E+S++++ + +R + +I++VEVS DLQ
Sbjct: 1 MAQGRRVERVAALIRKEVSELMIN------------GIRDERVHHGMVSITEVEVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VSVFG+ + ++ + GL++ + ++R +LGRR+++R PE+ F D ERG+ V+
Sbjct: 49 HCKIFVSVFGEAQERDQVLEGLQAASGFLRGELGRRLQMRRAPEVVFQLDRGLERGTSVL 108
Query: 184 AILDRIKAEKE 194
+L+R++ E++
Sbjct: 109 GLLNRLEDERQ 119
>gi|254432465|ref|ZP_05046168.1| ribosome-binding factor A [Cyanobium sp. PCC 7001]
gi|197626918|gb|EDY39477.1| ribosome-binding factor A [Cyanobium sp. PCC 7001]
Length = 132
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 81/136 (59%), Gaps = 12/136 (8%)
Query: 73 VAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVF 132
VA I+RE+S++L+ A + +R + +++ VEV+ DLQ K++VSV+
Sbjct: 4 VASLIRREVSELLV------------AGIKDERVAQGMVSVTRVEVAGDLQHCKIHVSVY 51
Query: 133 GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRIKAE 192
G D ++ A+AGL+S A YV+ +L RR+K+R TPE+ F D E+G+ V+ +L+R++ E
Sbjct: 52 GSDAERQQAMAGLQSAAAYVKGELSRRLKMRRTPEVMFRLDRGLEQGTSVLGLLNRLEEE 111
Query: 193 KEAAKSKNKEQFESPD 208
+ A + + D
Sbjct: 112 RRARADQGGASQDGAD 127
>gi|260435606|ref|ZP_05789576.1| ribosome-binding factor A [Synechococcus sp. WH 8109]
gi|260413480|gb|EEX06776.1| ribosome-binding factor A [Synechococcus sp. WH 8109]
Length = 140
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 82/131 (62%), Gaps = 12/131 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV+ VA I++E+S +++ + +R + +I++VEVS DLQ
Sbjct: 1 MAQGRRVERVAALIRKEVSQLMIN------------GIRDERVHQGMVSITEVEVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VSVFG+ + ++ + GL++ + ++R +LGRR+++R PE+ F D ERG+ V+
Sbjct: 49 HCKIFVSVFGEAQERDQVLEGLEAASGFLRGELGRRLQMRRAPEVVFQLDRGLERGTSVL 108
Query: 184 AILDRIKAEKE 194
+L+R++ E++
Sbjct: 109 GLLNRLEDERQ 119
>gi|284928793|ref|YP_003421315.1| ribosome-binding factor A [cyanobacterium UCYN-A]
gi|284809252|gb|ADB94957.1| ribosome-binding factor A [cyanobacterium UCYN-A]
Length = 128
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 79/127 (62%), Gaps = 12/127 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MAN RRV ++ I+RE+S+MLL D + DR + + +I++V++S DLQ
Sbjct: 1 MANSRRVSRISSLIKREISNMLLFD------------IKDDRVGAGMISITNVDLSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
VK++VS++G + + + GLKS YVR +L +R++LR P+++F +D E+G+ ++
Sbjct: 49 HVKIFVSIYGTEEVQFETMQGLKSSEGYVRKELAQRIRLRRAPDVKFFQDYGIEKGNEML 108
Query: 184 AILDRIK 190
+L +K
Sbjct: 109 YLLSELK 115
>gi|317968062|ref|ZP_07969452.1| ribosome-binding factor A [Synechococcus sp. CB0205]
Length = 136
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 82/130 (63%), Gaps = 12/130 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV+ VA I+RE+S++L+T + +R + +I++V+V+ DLQ
Sbjct: 1 MAQGRRVERVAALIRREVSELLVT------------GIKDERVSLGMVSITNVDVAGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VSV+G ++ A+ GL+S + YV+ +LGRR+ +R TPE+ F D E+G+ V+
Sbjct: 49 HCKIFVSVYGSAEVQQQALEGLRSASNYVKGELGRRLNMRRTPEVIFQLDRGIEKGTSVL 108
Query: 184 AILDRIKAEK 193
+L++++ ++
Sbjct: 109 GLLNQLEEKR 118
>gi|87301786|ref|ZP_01084620.1| ribosome-binding factor A [Synechococcus sp. WH 5701]
gi|87283354|gb|EAQ75309.1| ribosome-binding factor A [Synechococcus sp. WH 5701]
Length = 128
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 76/122 (62%), Gaps = 12/122 (9%)
Query: 73 VAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVF 132
+A I+RE+S++L+ + +R + +++ VEV+ DLQ K++VS+F
Sbjct: 1 MASLIRREISELLVN------------GIKDERVSLGMVSVTQVEVAGDLQHCKIFVSIF 48
Query: 133 GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRIKAE 192
G D ++ A+AGLKS A +V+ +L RR+ LR TPE++F+ D ++GS V+ +L ++ E
Sbjct: 49 GTDEDRQTALAGLKSAAPFVKGELARRLNLRRTPEVQFLLDRGLQKGSSVLGLLSQLGEE 108
Query: 193 KE 194
++
Sbjct: 109 RQ 110
>gi|125973505|ref|YP_001037415.1| ribosome-binding factor A [Clostridium thermocellum ATCC 27405]
gi|281417708|ref|ZP_06248728.1| ribosome-binding factor A [Clostridium thermocellum JW20]
gi|182676539|sp|A3DE43.1|RBFA_CLOTH RecName: Full=Ribosome-binding factor A
gi|125713730|gb|ABN52222.1| ribosome-binding factor A [Clostridium thermocellum ATCC 27405]
gi|281409110|gb|EFB39368.1| ribosome-binding factor A [Clostridium thermocellum JW20]
Length = 123
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 79/129 (61%), Gaps = 13/129 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R++ ++++I+RE+SD++ + D LS L +I++V V+ DL+ KVY
Sbjct: 3 RIERISEEIKREISDIIQNEL-------------KDPRLSKLISITEVNVTKDLRYAKVY 49
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VSV G + K ++ GLKS A ++R ++GRR++LR TPEI F D S ERG+ + +++
Sbjct: 50 VSVMGSEEEKANSLEGLKSAAGFIRREIGRRVQLRYTPEIHFELDNSIERGAYITKLINE 109
Query: 189 IKAEKEAAK 197
A+ + +K
Sbjct: 110 TSAQNKGSK 118
>gi|116073898|ref|ZP_01471160.1| ribosome-binding factor A [Synechococcus sp. RS9916]
gi|116069203|gb|EAU74955.1| ribosome-binding factor A [Synechococcus sp. RS9916]
Length = 133
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 81/131 (61%), Gaps = 12/131 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV+ VA I+RE S++L+ + +R + +I++VEVS DLQ
Sbjct: 1 MAPGRRVERVAALIRRETSELLIN------------GIRDERVHQGMVSITEVEVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++ ++ ++ + GL++ + Y+R +LGRR+++R PE+ F D E+G+ V+
Sbjct: 49 HCKIFVSIYSEEEQRQQVLEGLQAASGYLRGELGRRLQMRRAPEVVFQLDRGIEKGTSVL 108
Query: 184 AILDRIKAEKE 194
+L+R++ E+E
Sbjct: 109 NLLNRLEDERE 119
>gi|33866739|ref|NP_898298.1| ribosome-binding factor A [Synechococcus sp. WH 8102]
gi|39931754|sp|Q7TTS8.1|RBFA_SYNPX RecName: Full=Ribosome-binding factor A
gi|33639340|emb|CAE08722.1| possible Ribosome-binding factor A [Synechococcus sp. WH 8102]
Length = 134
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 85/144 (59%), Gaps = 19/144 (13%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV+ VA I++E S++L+ + +R + +I++VEVS DLQ
Sbjct: 1 MAQGRRVERVAALIRKETSELLIN------------GIRDERVHQGMVSITNVEVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS+FGD+ + + GL++ + Y++ +LGRR+++R P++ F D ERG+ V+
Sbjct: 49 HCKIFVSIFGDEASQLQVMEGLQAASGYLKGELGRRLQMRRAPDVVFQLDRGIERGTSVL 108
Query: 184 AILDRIKAEKEAAKSKNKEQFESP 207
+L++++ E+ KE+ E P
Sbjct: 109 GLLNKLEDER-------KERGEIP 125
>gi|148241380|ref|YP_001226537.1| ribosome-binding factor A [Synechococcus sp. RCC307]
gi|166219414|sp|A5GQM5.1|RBFA_SYNR3 RecName: Full=Ribosome-binding factor A
gi|147849690|emb|CAK27184.1| Ribosome-binding factor A [Synechococcus sp. RCC307]
Length = 131
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 80/131 (61%), Gaps = 12/131 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA+ RRV+ VA I+RE+S++L+ + +R + +I++V V+ DLQ
Sbjct: 1 MAHGRRVERVASMIRREMSELLVN------------GVRDERVNQGMVSITNVVVAGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
KV VS+FG + ++ A+AGL+S A Y+R +L RR+ +R TPE+ F D+ +G V+
Sbjct: 49 HCKVSVSIFGSESEQDQAMAGLRSAAPYLRGELSRRLNMRRTPELVFHHDKGLAQGVEVL 108
Query: 184 AILDRIKAEKE 194
+L +++ E++
Sbjct: 109 GLLSKLEEERQ 119
>gi|406983070|gb|EKE04319.1| hypothetical protein ACD_20C00086G0009 [uncultured bacterium]
Length = 116
Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 58/83 (69%)
Query: 107 LSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTP 166
+S + +++D E S+D + KVYVSV+G D KE + L+ A Y+R +LG+R++ R TP
Sbjct: 29 ISGIVSVTDAETSSDYKFAKVYVSVYGSDEQKEQTLEALQDSASYIRGELGKRIRTRNTP 88
Query: 167 EIRFIEDESFERGSRVIAILDRI 189
E+ FI D+S ERGSR+ ++D+I
Sbjct: 89 ELEFIRDDSLERGSRITELIDKI 111
>gi|256003323|ref|ZP_05428314.1| ribosome-binding factor A [Clostridium thermocellum DSM 2360]
gi|385778576|ref|YP_005687741.1| ribosome-binding factor A [Clostridium thermocellum DSM 1313]
gi|419723596|ref|ZP_14250711.1| Ribosome-binding factor A [Clostridium thermocellum AD2]
gi|419724579|ref|ZP_14251641.1| Ribosome-binding factor A [Clostridium thermocellum YS]
gi|255992613|gb|EEU02704.1| ribosome-binding factor A [Clostridium thermocellum DSM 2360]
gi|316940256|gb|ADU74290.1| ribosome-binding factor A [Clostridium thermocellum DSM 1313]
gi|380772126|gb|EIC05984.1| Ribosome-binding factor A [Clostridium thermocellum YS]
gi|380780278|gb|EIC09961.1| Ribosome-binding factor A [Clostridium thermocellum AD2]
Length = 123
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 78/129 (60%), Gaps = 13/129 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R++ ++++I+RE+SD++ + D LS L +I++V V+ DL+ KVY
Sbjct: 3 RIERISEEIKREISDIIQNEL-------------KDPRLSKLISITEVNVTKDLRYAKVY 49
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VSV G K ++ GLKS A ++R ++GRR++LR TPEI F D S ERG+ + +++
Sbjct: 50 VSVMGSKEEKANSLEGLKSAAGFIRREIGRRVQLRYTPEIHFELDNSIERGAYITKLINE 109
Query: 189 IKAEKEAAK 197
A+ + +K
Sbjct: 110 TSAQNKGSK 118
>gi|148240554|ref|YP_001225941.1| ribosome-binding factor A [Synechococcus sp. WH 7803]
gi|166219413|sp|A5GNX9.1|RBFA_SYNPW RecName: Full=Ribosome-binding factor A
gi|147849093|emb|CAK24644.1| Ribosome-binding factor A [Synechococcus sp. WH 7803]
Length = 140
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 87/158 (55%), Gaps = 19/158 (12%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV+ VA I++E S++L+ + DR L +I+ V+VS DLQ
Sbjct: 1 MAPGRRVERVAALIRKETSELLMH------------GIRDDRVHQGLISITQVDVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VSV D G+ + GL++ + ++R +LGRR+++R PE+ F D E+G+ V+
Sbjct: 49 HCKIFVSVLADPEGRAQVMEGLQAASSFLRGELGRRLQMRRAPEVVFHLDRGLEKGASVL 108
Query: 184 AILDRIKAEKEAAKSKNKEQFESPDLPEDERDWEGDDP 221
+L ++ E+ +E+ E P +D ++ D+P
Sbjct: 109 GLLGDLERER-------QERGEIPPGSDDAQNCHDDEP 139
>gi|390934927|ref|YP_006392432.1| Ribosome-binding factor A [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
gi|389570428|gb|AFK86833.1| Ribosome-binding factor A [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
Length = 119
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 74/118 (62%), Gaps = 13/118 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R+ ++++I++E+S M+ + D +SS+T+I+D+EVS DL+ K+Y
Sbjct: 4 RIGRLSEEIKKEVSQMIFEEI-------------KDPRISSMTSITDIEVSKDLRYAKIY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
+SV+G+D K+ I GLKS ++R +LG+R+KLR TPE+ F D S E G+ + IL
Sbjct: 51 ISVYGNDDEKKNTIEGLKSATGFIRHELGKRIKLRYTPELIFELDNSIEYGAHISKIL 108
>gi|116071460|ref|ZP_01468728.1| Ribosome-binding factor A [Synechococcus sp. BL107]
gi|116065083|gb|EAU70841.1| Ribosome-binding factor A [Synechococcus sp. BL107]
Length = 134
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 80/131 (61%), Gaps = 12/131 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV+ VA I++E S++L+ + +R + +I+ VEV+ DLQ
Sbjct: 1 MAQGRRVERVAALIRKETSELLIN------------GIRDERVHKGMVSITSVEVAGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS+FG+ + + GL++ + Y+R +LGRR+++R PE++F D E+G+ V+
Sbjct: 49 HCKIFVSIFGEPNDQNEVMEGLEAASGYLRGELGRRLQMRRAPEVKFQLDRGLEKGTSVL 108
Query: 184 AILDRIKAEKE 194
+L++++ +++
Sbjct: 109 GLLNQLEDQRQ 119
>gi|296330880|ref|ZP_06873355.1| ribosome-binding factor A [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305674398|ref|YP_003866070.1| ribosome-binding factor A [Bacillus subtilis subsp. spizizenii str.
W23]
gi|296151885|gb|EFG92759.1| ribosome-binding factor A [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305412642|gb|ADM37761.1| ribosome-binding factor A [Bacillus subtilis subsp. spizizenii str.
W23]
Length = 117
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 75/128 (58%), Gaps = 20/128 (15%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R V +Q+++EL D++ L D + F T++DV VS DLQ+
Sbjct: 4 RANRVGEQMKKELGDIISRKLKDPRIGF-----------------LTVTDVRVSGDLQIA 46
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
KVY+SV GD++ +E A+ GL+ ++RS++G R++LR TPEI F DES + G+R+ +
Sbjct: 47 KVYISVLGDEKKREEALKGLEKAKGFIRSEIGSRIRLRKTPEIEFEFDESIDYGNRIETL 106
Query: 186 LDRIKAEK 193
+ I +EK
Sbjct: 107 IHEIHSEK 114
>gi|302670331|ref|YP_003830291.1| ribosome-binding factor A RbfA [Butyrivibrio proteoclasticus B316]
gi|302394804|gb|ADL33709.1| ribosome-binding factor A RbfA [Butyrivibrio proteoclasticus B316]
Length = 142
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 64/109 (58%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLR 163
D +S +T++ DVEV+ DL+ KV+V+V GDD + GLKS A YVRS L + + +R
Sbjct: 28 DPRISPMTSVMDVEVAPDLKTCKVWVTVMGDDEDRARTAEGLKSAAGYVRSTLAKELNMR 87
Query: 164 LTPEIRFIEDESFERGSRVIAILDRIKAEKEAAKSKNKEQFESPDLPED 212
TPEIRFI D+S E + +D + A+ A+ E+ E D ED
Sbjct: 88 YTPEIRFIMDDSIEYAINMSKKIDEVTAKDNEARVARGEEIEEADSVED 136
>gi|33239584|ref|NP_874526.1| ribosome-binding factor A [Prochlorococcus marinus subsp. marinus
str. CCMP1375]
gi|39931797|sp|Q7VE81.1|RBFA_PROMA RecName: Full=Ribosome-binding factor A
gi|33237109|gb|AAP99178.1| Ribosome-binding factor A [Prochlorococcus marinus subsp. marinus
str. CCMP1375]
Length = 130
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 81/130 (62%), Gaps = 12/130 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV+ VA I++E+S++L + R +++ TI++VEVS DLQ
Sbjct: 1 MAQSRRVEKVAALIRKEMSELL------------SNGIRDQRVNTTMITITEVEVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G++ K+ +GL++ +++ +LGRR+++R PE+ F D E+G V+
Sbjct: 49 HCKIFVSIYGNEIQKDEVFSGLEASQSFLKGELGRRLQMRRAPEVVFKLDRGMEKGISVL 108
Query: 184 AILDRIKAEK 193
+L++++AE+
Sbjct: 109 NLLEKLEAER 118
>gi|33864228|ref|NP_895788.1| ribosome-binding factor A [Prochlorococcus marinus str. MIT 9313]
gi|39931781|sp|Q7V4I8.1|RBFA_PROMM RecName: Full=Ribosome-binding factor A
gi|33635812|emb|CAE22137.1| Ribosome-binding factor A [Prochlorococcus marinus str. MIT 9313]
Length = 142
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 81/132 (61%), Gaps = 12/132 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV+ VA I+RE S++L+ + +R + +I++VEVS DLQ
Sbjct: 1 MAPGRRVERVAALIRRETSELLI------------HGIRDERVHQGMVSITNVEVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G++ + + GL++ + ++R +LGRR+++R PE+ F D E+G+ V+
Sbjct: 49 HCKIFVSIYGEEIQRSEVLEGLEAASGFLRGELGRRLQMRRAPEVHFHLDRGIEKGTSVL 108
Query: 184 AILDRIKAEKEA 195
+L++++ ++E
Sbjct: 109 NLLEQLEQQRET 120
>gi|124024303|ref|YP_001018610.1| ribosome-binding factor A [Prochlorococcus marinus str. MIT 9303]
gi|166219388|sp|A2CCY5.1|RBFA_PROM3 RecName: Full=Ribosome-binding factor A
gi|123964589|gb|ABM79345.1| Ribosome-binding factor A [Prochlorococcus marinus str. MIT 9303]
Length = 142
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 81/132 (61%), Gaps = 12/132 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV+ VA I+RE S++L+ + +R + +I++VEVS DLQ
Sbjct: 1 MAPGRRVERVAALIRRETSELLI------------HGIRDERVHQGMVSITNVEVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G++ + + GL++ + ++R +LGRR+++R PE+ F D E+G+ V+
Sbjct: 49 HCKIFVSIYGEEIQRSEVLEGLEAASGFLRGELGRRLQMRRAPEVHFHLDRGIEKGTSVL 108
Query: 184 AILDRIKAEKEA 195
+L++++ ++E
Sbjct: 109 NLLEQLEQQRET 120
>gi|88807131|ref|ZP_01122643.1| possible Ribosome-binding factor A [Synechococcus sp. WH 7805]
gi|88788345|gb|EAR19500.1| possible Ribosome-binding factor A [Synechococcus sp. WH 7805]
Length = 140
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 84/151 (55%), Gaps = 12/151 (7%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV+ VA I++E S++L+ + +R L +I+ VEVS DLQ
Sbjct: 1 MAPGRRVERVAALIRKETSELLIH------------GIRDERVHQGLISITGVEVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VSV D GK + GL++ + ++R +LGRR+K+R PE+ F D E+G+ V+
Sbjct: 49 HCKIFVSVLADPEGKAQVMDGLQAASSFLRGELGRRLKMRRAPEVVFHLDRGLEKGASVL 108
Query: 184 AILDRIKAEKEAAKSKNKEQFESPDLPEDER 214
+L ++ E++ ++ ++ +DER
Sbjct: 109 GLLGDLERERQVRGEIPAGSDDAHEIHDDER 139
>gi|350265980|ref|YP_004877287.1| ribosome-binding factor A [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|443632664|ref|ZP_21116843.1| ribosome-binding factor A [Bacillus subtilis subsp. inaquosorum
KCTC 13429]
gi|349598867|gb|AEP86655.1| ribosome-binding factor A [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|443347487|gb|ELS61545.1| ribosome-binding factor A [Bacillus subtilis subsp. inaquosorum
KCTC 13429]
Length = 115
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 74/128 (57%), Gaps = 20/128 (15%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R V +Q+++EL D++ L D + F T++DV VS DLQ+
Sbjct: 2 RANRVGEQMKKELGDIISRKLKDPRIGF-----------------LTVTDVRVSGDLQIA 44
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
KVY+SV GD++ +E A+ GL ++RS++G R++LR TPEI F DES + G+R+ +
Sbjct: 45 KVYISVLGDEKKREEALKGLAKAKGFIRSEIGSRIRLRKTPEIEFEFDESIDYGNRIETL 104
Query: 186 LDRIKAEK 193
+ I +EK
Sbjct: 105 IHEIHSEK 112
>gi|52080272|ref|YP_079063.1| ribosome-binding factor A [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|319645948|ref|ZP_08000178.1| ribosome-binding factor A [Bacillus sp. BT1B_CT2]
gi|404489160|ref|YP_006713266.1| ribosome-binding factor A [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|423682214|ref|ZP_17657053.1| ribosome-binding factor A [Bacillus licheniformis WX-02]
gi|61214855|sp|Q65JH9.1|RBFA_BACLD RecName: Full=Ribosome-binding factor A
gi|52003483|gb|AAU23425.1| ribosome-binding factor A [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|52348151|gb|AAU40785.1| ribosome-binding factor RbfA [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|317391698|gb|EFV72495.1| ribosome-binding factor A [Bacillus sp. BT1B_CT2]
gi|383438988|gb|EID46763.1| ribosome-binding factor A [Bacillus licheniformis WX-02]
Length = 117
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 74/131 (56%), Gaps = 20/131 (15%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R V +Q+++EL D++ L D + F T++DV VS DLQ+
Sbjct: 4 RATRVGEQMKKELGDIIGRKLKDPRIGFL-----------------TVTDVRVSGDLQIA 46
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
KVY+SV GD++ +E + GL ++RS+LG R++LR TPEI F DES + G+R+ +
Sbjct: 47 KVYISVLGDEKKREETLKGLAKAKGFIRSELGNRIRLRKTPEIHFEFDESIDYGNRIETL 106
Query: 186 LDRIKAEKEAA 196
+ + A KE +
Sbjct: 107 IHELNANKEES 117
>gi|78183922|ref|YP_376357.1| ribosome-binding factor A [Synechococcus sp. CC9902]
gi|123582140|sp|Q3B014.1|RBFA_SYNS9 RecName: Full=Ribosome-binding factor A
gi|78168216|gb|ABB25313.1| ribosome-binding factor A [Synechococcus sp. CC9902]
Length = 134
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 80/131 (61%), Gaps = 12/131 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV+ VA I++E S++L+ + +R + +I+ VEV+ DLQ
Sbjct: 1 MAQGRRVERVAALIRKETSELLIN------------GIRDERVHKGMVSITSVEVAGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS+FG+ + + GL++ + ++R +LGRR+++R PE++F D E+G+ V+
Sbjct: 49 HCKIFVSIFGEPNDQNEVMEGLEAASGFLRGELGRRLQMRRAPEVKFQLDRGLEKGTSVL 108
Query: 184 AILDRIKAEKE 194
+L++++ +++
Sbjct: 109 GLLNQLEDQRQ 119
>gi|218133593|ref|ZP_03462397.1| hypothetical protein BACPEC_01462 [[Bacteroides] pectinophilus ATCC
43243]
gi|217990968|gb|EEC56974.1| ribosome-binding factor A [[Bacteroides] pectinophilus ATCC 43243]
Length = 136
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 74/132 (56%), Gaps = 13/132 (9%)
Query: 73 VAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVF 132
+ ++QRELS+++ + D + +T++ VEV+ DL+ K Y+SV
Sbjct: 15 INGEVQRELSNIIHNEI-------------KDPRIHPMTSVVTVEVAPDLKTCKAYISVL 61
Query: 133 GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRIKAE 192
GD++ ++ IAGLKS Y+R +L + LR TPEIRFI D+S E G R+ ++D + A
Sbjct: 62 GDEKAQQDTIAGLKSAEGYIRRELAHTVNLRNTPEIRFILDQSIEYGVRMSRLIDEVNAG 121
Query: 193 KEAAKSKNKEQF 204
E +++E
Sbjct: 122 LEDGGDEDEENL 133
>gi|452974426|gb|EME74246.1| ribosome-binding factor A [Bacillus sonorensis L12]
Length = 116
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 74/129 (57%), Gaps = 20/129 (15%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R V +Q+++EL D++ L D + F T++DV VS DLQ+
Sbjct: 4 RATRVGEQMKKELGDIIGRKLKDPRIGFL-----------------TVTDVSVSGDLQIA 46
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
KVY+SV GD++ +E + GL ++RS+LG R++LR TPEI+F DES + G+R+ +
Sbjct: 47 KVYISVLGDEKKREETLKGLAKAKGFIRSELGNRIRLRKTPEIQFEFDESIDYGNRIETL 106
Query: 186 LDRIKAEKE 194
+ + + KE
Sbjct: 107 IHELNSNKE 115
>gi|16078728|ref|NP_389547.1| ribosome-binding factor A [Bacillus subtilis subsp. subtilis str.
168]
gi|221309543|ref|ZP_03591390.1| ribosome-binding factor A [Bacillus subtilis subsp. subtilis str.
168]
gi|221313867|ref|ZP_03595672.1| ribosome-binding factor A [Bacillus subtilis subsp. subtilis str.
NCIB 3610]
gi|221318790|ref|ZP_03600084.1| ribosome-binding factor A [Bacillus subtilis subsp. subtilis str.
JH642]
gi|221323062|ref|ZP_03604356.1| ribosome-binding factor A [Bacillus subtilis subsp. subtilis str.
SMY]
gi|321315432|ref|YP_004207719.1| ribosome-binding factor A [Bacillus subtilis BSn5]
gi|398304214|ref|ZP_10507800.1| ribosome-binding factor A [Bacillus vallismortis DV1-F-3]
gi|402775911|ref|YP_006629855.1| ribosome-binding factor A [Bacillus subtilis QB928]
gi|418464|sp|P32731.1|RBFA_BACSU RecName: Full=Ribosome-binding factor A
gi|580902|emb|CAA79236.1| ORF6 [Bacillus subtilis subsp. subtilis str. 168]
gi|2634037|emb|CAB13538.1| ribosome-binding factor A [Bacillus subtilis subsp. subtilis str.
168]
gi|320021706|gb|ADV96692.1| ribosome-binding factor A [Bacillus subtilis BSn5]
gi|402481093|gb|AFQ57602.1| Ribosome-binding factor A [Bacillus subtilis QB928]
gi|407959072|dbj|BAM52312.1| ribosome-binding factor A [Synechocystis sp. PCC 6803]
gi|407964649|dbj|BAM57888.1| ribosome-binding factor A [Bacillus subtilis BEST7003]
Length = 117
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 74/128 (57%), Gaps = 20/128 (15%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R V +Q+++EL D++ L D + F T++DV VS DLQ+
Sbjct: 4 RANRVGEQMKKELGDIISRKLKDPRIGF-----------------LTVTDVRVSGDLQIA 46
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
KVY+SV GD++ +E A+ GL ++RS++G R++LR TPEI F DES + G+R+ +
Sbjct: 47 KVYISVLGDEKKREEALKGLAKAKGFIRSEIGSRIRLRKTPEIEFEFDESIDYGNRIETL 106
Query: 186 LDRIKAEK 193
+ + +EK
Sbjct: 107 IHELHSEK 114
>gi|415886616|ref|ZP_11548396.1| ribosome-binding factor A [Bacillus methanolicus MGA3]
gi|387587303|gb|EIJ79626.1| ribosome-binding factor A [Bacillus methanolicus MGA3]
Length = 123
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 81/137 (59%), Gaps = 20/137 (14%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R V +Q+++EL D++ + D + F T++DV+V+ DLQ
Sbjct: 4 RANRVGEQMKKELGDIIGRKIKDPRIGFV-----------------TVTDVQVTGDLQQA 46
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
KV++SV GD+ +E + GL ++RS++G+R++LR TPEI F DES E G+R+ ++
Sbjct: 47 KVFISVLGDEEQRENTLKGLAKAKGFIRSEIGQRIRLRKTPEIIFEFDESIEYGNRIESL 106
Query: 186 LDRIKAEKEAAKSKNKE 202
L +I E+++ + +N+E
Sbjct: 107 LHQIHNEEKSKEDRNEE 123
>gi|384175407|ref|YP_005556792.1| ribosome-binding factor A [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
gi|386758389|ref|YP_006231605.1| ribosome-binding factor A [Bacillus sp. JS]
gi|418033186|ref|ZP_12671663.1| ribosome-binding factor A [Bacillus subtilis subsp. subtilis str.
SC-8]
gi|428279263|ref|YP_005560998.1| ribosome-binding factor A [Bacillus subtilis subsp. natto BEST195]
gi|449094356|ref|YP_007426847.1| ribosome-binding factor A [Bacillus subtilis XF-1]
gi|452914006|ref|ZP_21962633.1| ribosome-binding factor A [Bacillus subtilis MB73/2]
gi|291484220|dbj|BAI85295.1| ribosome-binding factor A [Bacillus subtilis subsp. natto BEST195]
gi|349594631|gb|AEP90818.1| ribosome-binding factor A [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
gi|351469334|gb|EHA29510.1| ribosome-binding factor A [Bacillus subtilis subsp. subtilis str.
SC-8]
gi|384931671|gb|AFI28349.1| ribosome-binding factor A [Bacillus sp. JS]
gi|449028271|gb|AGE63510.1| ribosome-binding factor A [Bacillus subtilis XF-1]
gi|452116426|gb|EME06821.1| ribosome-binding factor A [Bacillus subtilis MB73/2]
Length = 115
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 74/128 (57%), Gaps = 20/128 (15%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R V +Q+++EL D++ L D + F T++DV VS DLQ+
Sbjct: 2 RANRVGEQMKKELGDIISRKLKDPRIGF-----------------LTVTDVRVSGDLQIA 44
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
KVY+SV GD++ +E A+ GL ++RS++G R++LR TPEI F DES + G+R+ +
Sbjct: 45 KVYISVLGDEKKREEALKGLAKAKGFIRSEIGSRIRLRKTPEIEFEFDESIDYGNRIETL 104
Query: 186 LDRIKAEK 193
+ + +EK
Sbjct: 105 IHELHSEK 112
>gi|430758911|ref|YP_007209632.1| ribosome-binding factor A [Bacillus subtilis subsp. subtilis str.
BSP1]
gi|430023431|gb|AGA24037.1| Ribosome-binding factor A [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 120
Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 74/128 (57%), Gaps = 20/128 (15%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R V +Q+++EL D++ L D + F T++DV VS DLQ+
Sbjct: 7 RANRVGEQMKKELGDIISRKLKDPRIGF-----------------LTVTDVRVSGDLQIA 49
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
KVY+SV GD++ +E A+ GL ++RS++G R++LR TPEI F DES + G+R+ +
Sbjct: 50 KVYISVLGDEKKREEALKGLAKAKGFIRSEIGSRIRLRKTPEIEFEFDESIDYGNRIETL 109
Query: 186 LDRIKAEK 193
+ + +EK
Sbjct: 110 IHELHSEK 117
>gi|427417203|ref|ZP_18907386.1| ribosome-binding factor A [Leptolyngbya sp. PCC 7375]
gi|425759916|gb|EKV00769.1| ribosome-binding factor A [Leptolyngbya sp. PCC 7375]
Length = 139
Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 87/150 (58%), Gaps = 13/150 (8%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV V+ I+RE+S ML++D + DR + + +++ V+VS DLQ
Sbjct: 1 MATSRRVAKVSASIKREISQMLVSD------------IKDDRVGAGMVSVTAVDVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
KV+VS++G D K +AGL + YVR LGRR++LR TPEI F ED S E+G+ V+
Sbjct: 49 HAKVFVSIYGTDEAKAETMAGLAAATPYVRGALGRRLRLRRTPEIMFKEDISIEQGTDVL 108
Query: 184 AILDRIKAEKEAAKSKNKEQFESPDLPEDE 213
+L R+K E+ + +N P EDE
Sbjct: 109 NLLSRLKHERNSVD-ENGIPTVVPSAVEDE 137
>gi|113953283|ref|YP_731751.1| ribosome-binding factor A [Synechococcus sp. CC9311]
gi|123132376|sp|Q0I721.1|RBFA_SYNS3 RecName: Full=Ribosome-binding factor A
gi|113880634|gb|ABI45592.1| ribosome-binding factor A [Synechococcus sp. CC9311]
Length = 134
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 84/147 (57%), Gaps = 13/147 (8%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV+ VA I++E S++L+ + +R + +I++VEVS DLQ
Sbjct: 1 MAQGRRVERVAALIRKETSELLI------------HGIRDERVHQGMVSITEVEVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
+++VSVFG+ K+ + GL++ ++R +LGRR+++R PEI F D E+G+ V+
Sbjct: 49 HCRIFVSVFGEQAQKDEVMDGLEAARGFLRGELGRRLQMRRAPEIVFKLDLGIEKGTTVL 108
Query: 184 AILDRIKAEKEAAKSKNKEQFESPDLP 210
+L ++ E++ + E E PD P
Sbjct: 109 HLLGELERERD-ERGDVTEGTELPDNP 134
>gi|398310759|ref|ZP_10514233.1| ribosome-binding factor A [Bacillus mojavensis RO-H-1]
Length = 117
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 74/127 (58%), Gaps = 20/127 (15%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R V +Q+++EL D++ L D + F T++DV VS DLQ+
Sbjct: 4 RANRVGEQMKKELGDIISRKLKDPRIGF-----------------LTVTDVRVSGDLQIA 46
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
KVY+SV GD++ +E A+ GL ++RS++G R++LR TPEI F DES + G+R+ +
Sbjct: 47 KVYISVLGDEKKREEALKGLAKAKGFIRSEIGSRIRLRKTPEIEFEFDESIDYGNRIETL 106
Query: 186 LDRIKAE 192
+ ++ +E
Sbjct: 107 IHQLNSE 113
>gi|161551797|ref|YP_147118.2| ribosome-binding factor A [Geobacillus kaustophilus HTA426]
gi|61214671|sp|Q5L0I6.2|RBFA_GEOKA RecName: Full=Ribosome-binding factor A
Length = 127
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 78/137 (56%), Gaps = 20/137 (14%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R V +Q+++ELSD++ L D + F T++DV V+ DLQ
Sbjct: 4 RATRVGEQMKKELSDIISRRLKDPRIGFV-----------------TVTDVRVTGDLQQA 46
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
KVY+SV GDD+ +E + L+ ++RS++G+R++LR TPEI F DE+ E GSR+ +
Sbjct: 47 KVYISVLGDDKQRENTLKALEKAKGFIRSEIGQRIRLRKTPEIFFEIDETMEYGSRIEQL 106
Query: 186 LDRIKAEKEAAKSKNKE 202
+ +I ++ AK + E
Sbjct: 107 IRQISSDDHPAKEADGE 123
>gi|194476765|ref|YP_002048944.1| ribosome-binding factor A [Paulinella chromatophora]
gi|171191772|gb|ACB42734.1| ribosome-binding factor A [Paulinella chromatophora]
Length = 124
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 78/130 (60%), Gaps = 12/130 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
M RRV+ VA I+RE S+++ +++ R + ++++V+++ DLQ
Sbjct: 1 MVQNRRVERVAALIRREASELI------------SSSIRDRRVHQGMMSVTEVKLAGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS+FG + + + GL+S + +VR +LGRR+KLR TPEI F D E+G+ VI
Sbjct: 49 HCKIFVSIFGSEEERHQVLTGLQSASAFVRGELGRRLKLRRTPEIVFELDRGIEKGTSVI 108
Query: 184 AILDRIKAEK 193
+L+ ++ ++
Sbjct: 109 GLLNELEKKR 118
>gi|157692348|ref|YP_001486810.1| ribosome-binding factor A [Bacillus pumilus SAFR-032]
gi|389573207|ref|ZP_10163282.1| ribosome-binding factor A [Bacillus sp. M 2-6]
gi|407977543|ref|ZP_11158380.1| ribosome-binding factor A [Bacillus sp. HYC-10]
gi|166918673|sp|A8FDD3.1|RBFA_BACP2 RecName: Full=Ribosome-binding factor A
gi|157681106|gb|ABV62250.1| ribosome-binding factor A [Bacillus pumilus SAFR-032]
gi|388426904|gb|EIL84714.1| ribosome-binding factor A [Bacillus sp. M 2-6]
gi|407415796|gb|EKF37377.1| ribosome-binding factor A [Bacillus sp. HYC-10]
Length = 116
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 71/121 (58%), Gaps = 20/121 (16%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R V +Q+++EL D+L L D + F T++DVEVS DLQ+
Sbjct: 4 RATRVGEQMKKELGDILGRKLKDPRIGF-----------------LTVTDVEVSGDLQIA 46
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
KVY+SV GD++ +E + GL Y+RS++G R++LR TPE+ F DES + G+R+ ++
Sbjct: 47 KVYISVLGDEKKREETLKGLAKAKGYIRSEIGNRIRLRKTPELHFEFDESVDYGNRIESL 106
Query: 186 L 186
+
Sbjct: 107 I 107
>gi|261419465|ref|YP_003253147.1| ribosome-binding factor A [Geobacillus sp. Y412MC61]
gi|297530560|ref|YP_003671835.1| ribosome-binding factor A [Geobacillus sp. C56-T3]
gi|319766280|ref|YP_004131781.1| ribosome-binding factor A [Geobacillus sp. Y412MC52]
gi|261375922|gb|ACX78665.1| ribosome-binding factor A [Geobacillus sp. Y412MC61]
gi|297253812|gb|ADI27258.1| ribosome-binding factor A [Geobacillus sp. C56-T3]
gi|317111146|gb|ADU93638.1| ribosome-binding factor A [Geobacillus sp. Y412MC52]
Length = 127
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 78/137 (56%), Gaps = 20/137 (14%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R V +Q+++ELSD++ L D + F T++DV V+ DLQ
Sbjct: 4 RATRVGEQMKKELSDIISRRLKDPRIGFV-----------------TVTDVRVTGDLQQA 46
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
KVY+SV GDD+ +E + L+ ++RS++G+R++LR TPEI F DE+ E GSR+ +
Sbjct: 47 KVYISVLGDDKQRENTLKALEKAKGFIRSEIGQRIRLRKTPEIFFEIDETIEYGSRIEQL 106
Query: 186 LDRIKAEKEAAKSKNKE 202
+ +I ++ AK + E
Sbjct: 107 IRQISSDDHPAKEADGE 123
>gi|311068188|ref|YP_003973111.1| ribosome-binding factor A [Bacillus atrophaeus 1942]
gi|419823831|ref|ZP_14347365.1| ribosome-binding factor A [Bacillus atrophaeus C89]
gi|310868705|gb|ADP32180.1| ribosome-binding factor A [Bacillus atrophaeus 1942]
gi|388472070|gb|EIM08859.1| ribosome-binding factor A [Bacillus atrophaeus C89]
Length = 117
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 78/130 (60%), Gaps = 20/130 (15%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R V +Q+++EL D++ L D + F T++DV V+ DLQ+
Sbjct: 4 RANRVGEQMKKELGDIISRKLKDPRIGF-----------------LTVTDVRVTGDLQIA 46
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
KVY+SV GD++ +E A+ GL+ ++RS++G R++LR TPEI F DES + G+R+ +
Sbjct: 47 KVYISVLGDEKKREEALKGLEKAKGFIRSEIGSRIRLRKTPEIEFEFDESIDYGNRIETL 106
Query: 186 LDRIKAEKEA 195
+ ++ ++K++
Sbjct: 107 IHQLHSDKDS 116
>gi|375008237|ref|YP_004981870.1| ribosome-binding factor A [Geobacillus thermoleovorans CCB_US3_UF5]
gi|359287086|gb|AEV18770.1| Ribosome-binding factor A [Geobacillus thermoleovorans CCB_US3_UF5]
Length = 127
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 78/137 (56%), Gaps = 20/137 (14%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R V +Q+++ELSD++ L D + F T++DV V+ DLQ
Sbjct: 4 RATRVGEQMKKELSDIISRRLKDPRIGFV-----------------TVTDVRVTGDLQQA 46
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
KVY+SV GDD+ +E + L+ ++RS++G+R++LR TPEI F DE+ E GSR+ +
Sbjct: 47 KVYISVLGDDKQQEETLKALEKAKGFIRSEIGQRIRLRKTPEIFFEIDETIEYGSRIEQL 106
Query: 186 LDRIKAEKEAAKSKNKE 202
+ +I ++ AK + E
Sbjct: 107 IRQISSDDHPAKEADGE 123
>gi|448237421|ref|YP_007401479.1| ribosome-binding factor A [Geobacillus sp. GHH01]
gi|445206263|gb|AGE21728.1| ribosome-binding factor A [Geobacillus sp. GHH01]
Length = 127
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 78/137 (56%), Gaps = 20/137 (14%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R V +Q+++ELSD++ L D + F T++DV V+ DLQ
Sbjct: 4 RATRVGEQMKKELSDIISRRLKDPRIGFV-----------------TVTDVRVTGDLQQA 46
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
KVY+S+ GDD+ +E + L+ ++RS++G+R++LR TPEI F DE+ E GSR+ +
Sbjct: 47 KVYISILGDDKQREETLKALEKAKGFIRSEIGQRIRLRKTPEIFFEIDETMEYGSRIEQL 106
Query: 186 LDRIKAEKEAAKSKNKE 202
+ +I ++ AK + E
Sbjct: 107 IRQISSDDHPAKEADGE 123
>gi|352096137|ref|ZP_08957084.1| Ribosome-binding factor A [Synechococcus sp. WH 8016]
gi|351677493|gb|EHA60642.1| Ribosome-binding factor A [Synechococcus sp. WH 8016]
Length = 134
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 84/149 (56%), Gaps = 16/149 (10%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV+ VA I++E S++L+ + +R + +I++VEVS DLQ
Sbjct: 1 MAQGRRVERVAALIRKETSELLIN------------GIRDERVHQGMVSITEVEVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
+++VSVFG+ K+ + GL++ ++R +LGRR+++R PEI F D E+G+ V+
Sbjct: 49 HCRIFVSVFGEQAQKDEVMDGLEAARGFLRGELGRRLQMRRAPEIVFKLDLGIEKGTSVL 108
Query: 184 AILDRIKAEKEAAKSKNKEQFESPDLPED 212
+L E E + + + E +LPE+
Sbjct: 109 HLL----GELERERDERGDVPEGTELPEN 133
>gi|333897116|ref|YP_004470990.1| ribosome-binding factor A [Thermoanaerobacterium xylanolyticum
LX-11]
gi|333112381|gb|AEF17318.1| Ribosome-binding factor A [Thermoanaerobacterium xylanolyticum
LX-11]
Length = 119
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 73/118 (61%), Gaps = 13/118 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R+ ++++I++E+S M+ + D +S++T+I+D+EVS DL+ K+Y
Sbjct: 4 RIGRLSEEIKKEVSQMIFEEI-------------KDPRISNMTSITDIEVSKDLRYAKIY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
+SV+G+D K+ I GLKS ++R +LG+R+KLR PE+ F D S E G+ + IL
Sbjct: 51 ISVYGNDDEKKNTIEGLKSATGFIRRELGKRIKLRYIPELIFELDNSIEYGAHISKIL 108
>gi|403069143|ref|ZP_10910475.1| ribosome-binding factor A [Oceanobacillus sp. Ndiop]
Length = 113
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 73/118 (61%), Gaps = 14/118 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R VA+Q+++ELSD +LT K+ V T++DVEV+ DLQ KV+
Sbjct: 5 RANRVAEQMKKELSD-ILTRKIKDPRV-------------GFVTVTDVEVTGDLQQAKVF 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
+SV GD++ ++ + GL ++RS++G R++LR TPE+ F DE++E G+R+ +IL
Sbjct: 51 ISVLGDEKKRQDTLMGLAKAKGFIRSEIGNRIRLRKTPELTFEFDEAYEYGNRIESIL 108
>gi|433655004|ref|YP_007298712.1| ribosome-binding factor A [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433293193|gb|AGB19015.1| ribosome-binding factor A [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 119
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 73/118 (61%), Gaps = 13/118 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R ++++I++E+S M+ + D +S++T+I+D+EV+ DL+ K+Y
Sbjct: 4 RSGRLSEEIKKEVSKMIFEEI-------------KDPRISNMTSITDIEVTKDLRYAKIY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
+SV+G+D K+ + GLKS ++R +LG+R+KLR TPE+ F D S E G+ + IL
Sbjct: 51 ISVYGNDEEKKSTLEGLKSATGFIRHELGKRIKLRYTPELIFEIDNSIEYGAHISKIL 108
>gi|170758382|ref|YP_001787728.1| ribosome-binding factor A [Clostridium botulinum A3 str. Loch
Maree]
gi|238688515|sp|B1KWK6.1|RBFA_CLOBM RecName: Full=Ribosome-binding factor A
gi|169405371|gb|ACA53782.1| ribosome-binding factor A [Clostridium botulinum A3 str. Loch
Maree]
Length = 120
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 61/90 (67%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLR 163
D LS++ +++DV+V+ DL+ KVYVS+FG+++ KE ++ LKS ++R ++GRR+KLR
Sbjct: 27 DPRLSAMVSVTDVDVTKDLKYAKVYVSIFGNEKAKEESLQALKSSVGFIRKEIGRRVKLR 86
Query: 164 LTPEIRFIEDESFERGSRVIAILDRIKAEK 193
TPE+ D S ERG + +L IK K
Sbjct: 87 NTPEVIIEVDNSIERGMHIDELLHSIKENK 116
>gi|194014192|ref|ZP_03052809.1| ribosome-binding factor A [Bacillus pumilus ATCC 7061]
gi|194013218|gb|EDW22783.1| ribosome-binding factor A [Bacillus pumilus ATCC 7061]
Length = 116
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 71/121 (58%), Gaps = 20/121 (16%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R V +Q+++EL D+L L D + F T++DVEV+ DLQ+
Sbjct: 4 RATRVGEQMKKELGDILGRKLKDPRIGFL-----------------TVTDVEVTGDLQIA 46
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
KVY+SV GD++ +E + GL Y+RS++G R++LR TPE+ F DES + G+R+ ++
Sbjct: 47 KVYISVLGDEKKREETLKGLAKAKGYIRSEIGNRIRLRKTPELHFEFDESVDYGNRIESL 106
Query: 186 L 186
+
Sbjct: 107 I 107
>gi|384159352|ref|YP_005541425.1| ribosome-binding factor A [Bacillus amyloliquefaciens TA208]
gi|394994010|ref|ZP_10386746.1| ribosome-binding factor A [Bacillus sp. 916]
gi|421731663|ref|ZP_16170786.1| ribosome-binding factor A [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|429505219|ref|YP_007186403.1| ribosome-binding factor A [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|451346962|ref|YP_007445593.1| ribosome-binding factor A [Bacillus amyloliquefaciens IT-45]
gi|452855612|ref|YP_007497295.1| ribosome-binding factor A [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
gi|182676604|sp|A7Z4T6.2|RBFA_BACA2 RecName: Full=Ribosome-binding factor A
gi|328553440|gb|AEB23932.1| ribosome-binding factor A [Bacillus amyloliquefaciens TA208]
gi|393805089|gb|EJD66472.1| ribosome-binding factor A [Bacillus sp. 916]
gi|407073876|gb|EKE46866.1| ribosome-binding factor A [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|429486809|gb|AFZ90733.1| ribosome-binding factor A [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|449850720|gb|AGF27712.1| ribosome-binding factor A [Bacillus amyloliquefaciens IT-45]
gi|452079872|emb|CCP21630.1| ribosome-binding factor A [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
Length = 117
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 74/128 (57%), Gaps = 20/128 (15%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R V +Q+++EL D++ L D + F T++DV VS DLQ+
Sbjct: 4 RANRVGEQMKKELGDIISRKLKDPRIGF-----------------LTVTDVRVSGDLQIA 46
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
KVY+SV G ++ KE A+ GL+ ++RS++G R++LR TPE+ F DES E G+R+ +
Sbjct: 47 KVYISVLGGEKKKEEALKGLEKAKGFIRSEIGSRIRLRKTPELEFEFDESIEYGNRIETL 106
Query: 186 LDRIKAEK 193
+ + ++K
Sbjct: 107 IHELHSDK 114
>gi|331082954|ref|ZP_08332074.1| ribosome-binding factor A [Lachnospiraceae bacterium 6_1_63FAA]
gi|330399949|gb|EGG79607.1| ribosome-binding factor A [Lachnospiraceae bacterium 6_1_63FAA]
Length = 128
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 58/94 (61%)
Query: 110 LTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIR 169
+T+++ VEV+ DL+ + Y+SV G++ K IAGLKS Y+R QL + + LR TPEIR
Sbjct: 35 MTSVTAVEVAPDLKTCRAYISVMGNEEAKNNTIAGLKSAEGYIRRQLAKNINLRNTPEIR 94
Query: 170 FIEDESFERGSRVIAILDRIKAEKEAAKSKNKEQ 203
FI DES E G + ++D + ++E + Q
Sbjct: 95 FILDESIEYGVAMSKLIDEVTGKEEVQEDGENNQ 128
>gi|154686082|ref|YP_001421243.1| ribosome-binding factor A [Bacillus amyloliquefaciens FZB42]
gi|308173628|ref|YP_003920333.1| ribosome-binding factor A [Bacillus amyloliquefaciens DSM 7]
gi|375362310|ref|YP_005130349.1| Ribosome-binding factor A [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|384164214|ref|YP_005545593.1| ribosome-binding factor A [Bacillus amyloliquefaciens LL3]
gi|384168398|ref|YP_005549776.1| ribosome-binding factor A [Bacillus amyloliquefaciens XH7]
gi|384265249|ref|YP_005420956.1| Ribosome-binding factor A [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|385264792|ref|ZP_10042879.1| ribosome-binding factor A [Bacillus sp. 5B6]
gi|387898247|ref|YP_006328543.1| ribosome-binding factor A [Bacillus amyloliquefaciens Y2]
gi|154351933|gb|ABS74012.1| RbfA [Bacillus amyloliquefaciens FZB42]
gi|307606492|emb|CBI42863.1| ribosome-binding factor A [Bacillus amyloliquefaciens DSM 7]
gi|328911769|gb|AEB63365.1| Ribosome-binding factor A [Bacillus amyloliquefaciens LL3]
gi|341827677|gb|AEK88928.1| ribosome-binding factor A [Bacillus amyloliquefaciens XH7]
gi|371568304|emb|CCF05154.1| Ribosome-binding factor A [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|380498602|emb|CCG49640.1| Ribosome-binding factor A [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|385149288|gb|EIF13225.1| ribosome-binding factor A [Bacillus sp. 5B6]
gi|387172357|gb|AFJ61818.1| ribosome-binding factor A [Bacillus amyloliquefaciens Y2]
Length = 115
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 74/128 (57%), Gaps = 20/128 (15%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R V +Q+++EL D++ L D + F T++DV VS DLQ+
Sbjct: 2 RANRVGEQMKKELGDIISRKLKDPRIGF-----------------LTVTDVRVSGDLQIA 44
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
KVY+SV G ++ KE A+ GL+ ++RS++G R++LR TPE+ F DES E G+R+ +
Sbjct: 45 KVYISVLGGEKKKEEALKGLEKAKGFIRSEIGSRIRLRKTPELEFEFDESIEYGNRIETL 104
Query: 186 LDRIKAEK 193
+ + ++K
Sbjct: 105 IHELHSDK 112
>gi|124024898|ref|YP_001014014.1| ribosome-binding factor A [Prochlorococcus marinus str. NATL1A]
gi|166219387|sp|A2BZT9.1|RBFA_PROM1 RecName: Full=Ribosome-binding factor A
gi|123959966|gb|ABM74749.1| Ribosome-binding factor A [Prochlorococcus marinus str. NATL1A]
Length = 123
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 83/132 (62%), Gaps = 12/132 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MAN RRV+ +A ++RE+S++L+ + +R ++ TI+ VEVS DLQ
Sbjct: 1 MANSRRVEKLAALLKREISELLVN------------GIRDERIHQAMITITSVEVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
++++S+FG+++ K+ + GL+ ++R++L RR+++R +PE+ F D+ +G V+
Sbjct: 49 HARIFISLFGEEKKKDQVLVGLEEAKGFIRAELARRLQMRRSPELVFKIDKGMTKGPEVL 108
Query: 184 AILDRIKAEKEA 195
+L+ ++ E+++
Sbjct: 109 DLLNALELERKS 120
>gi|15614974|ref|NP_243277.1| ribosome-binding factor A [Bacillus halodurans C-125]
gi|20139771|sp|Q9KA79.1|RBFA_BACHD RecName: Full=Ribosome-binding factor A
gi|10175031|dbj|BAB06130.1| ribosome-binding factor A [Bacillus halodurans C-125]
Length = 116
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 75/134 (55%), Gaps = 21/134 (15%)
Query: 64 MANPRRVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSA 120
M+N R V +Q+++ELSD+ L D ++F T++ V+V+
Sbjct: 1 MSNVR-ANRVGEQMKKELSDIFMRELKDPRIEFV-----------------TVTGVDVTG 42
Query: 121 DLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGS 180
DLQ VY++V GDD KE +AGL ++RS++G+R++LR TPE+ F DES E G+
Sbjct: 43 DLQQANVYITVLGDDEQKEATLAGLSKAKGFIRSEIGKRIRLRKTPELFFHFDESIEYGN 102
Query: 181 RVIAILDRIKAEKE 194
R+ +L I + E
Sbjct: 103 RIEKLLQDINRDGE 116
>gi|226313018|ref|YP_002772912.1| ribosome binding factor A [Brevibacillus brevis NBRC 100599]
gi|398814370|ref|ZP_10573051.1| ribosome-binding factor A [Brevibacillus sp. BC25]
gi|254789735|sp|C0ZF49.1|RBFA_BREBN RecName: Full=Ribosome-binding factor A
gi|226095966|dbj|BAH44408.1| ribosome binding factor A [Brevibacillus brevis NBRC 100599]
gi|398036639|gb|EJL29848.1| ribosome-binding factor A [Brevibacillus sp. BC25]
Length = 121
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 78/129 (60%), Gaps = 14/129 (10%)
Query: 66 NPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
N R+ V ++I++ELS VLQ L + +G T++DVEVS+DLQ+
Sbjct: 2 NKTRISRVGEEIKKELS------LVLQRG-LKDPRVG-------FVTVTDVEVSSDLQLA 47
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
KV+VS+FG + ++ ++AGL Y+R+++G+R+KLR P+ F DES + GS++ +I
Sbjct: 48 KVFVSIFGSEEERKASLAGLTKAKGYLRTEIGKRVKLRHIPDFVFKLDESIDYGSKIESI 107
Query: 186 LDRIKAEKE 194
L I E E
Sbjct: 108 LREISTEGE 116
>gi|170754753|ref|YP_001781960.1| ribosome-binding factor A [Clostridium botulinum B1 str. Okra]
gi|429247608|ref|ZP_19210848.1| ribosome-binding factor A [Clostridium botulinum CFSAN001628]
gi|229564414|sp|B1II48.1|RBFA_CLOBK RecName: Full=Ribosome-binding factor A
gi|169119965|gb|ACA43801.1| ribosome-binding factor A [Clostridium botulinum B1 str. Okra]
gi|428755353|gb|EKX77984.1| ribosome-binding factor A [Clostridium botulinum CFSAN001628]
Length = 120
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 74/122 (60%), Gaps = 13/122 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + +++++E+S+++ D D LS++ +++DV+V+ DL+ KVY
Sbjct: 5 RAGRINEEVKKEVSNIIHNDI-------------KDPRLSAMVSVTDVDVTKDLKYAKVY 51
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VS+FG+++ KE ++ LKS ++R ++GRR+KLR TPE+ D S ERG + +L
Sbjct: 52 VSIFGNEKAKEESLQALKSSVGFIRKEIGRRVKLRNTPEVIIEVDNSIERGMHIDELLHS 111
Query: 189 IK 190
IK
Sbjct: 112 IK 113
>gi|220927911|ref|YP_002504820.1| ribosome-binding factor A [Clostridium cellulolyticum H10]
gi|219998239|gb|ACL74840.1| ribosome-binding factor A [Clostridium cellulolyticum H10]
Length = 117
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 72/124 (58%), Gaps = 13/124 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R+ +++++++E+S+++ D D L S+ +I V+ DL+ KVY
Sbjct: 4 RIVRISEEVKKEISNIIQNDI-------------KDPRLPSMVSIVSCSVTKDLRYAKVY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VSVFG+D K+ AI+ LKS A ++R +LG R++LR TPEI F D S E G + +LD
Sbjct: 51 VSVFGNDEQKKNAISALKSAAGFIRRELGHRVQLRYTPEIHFELDTSIEHGFHINKLLDD 110
Query: 189 IKAE 192
K E
Sbjct: 111 AKKE 114
>gi|387926993|ref|ZP_10129672.1| ribosome-binding factor A [Bacillus methanolicus PB1]
gi|387589137|gb|EIJ81457.1| ribosome-binding factor A [Bacillus methanolicus PB1]
Length = 123
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 81/134 (60%), Gaps = 14/134 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R V +Q+++EL D++ + + +G T++DV+V+ DLQ KV+
Sbjct: 4 RANRVGEQMKKELGDIIGRK-------IKDPRVG-------FVTVTDVQVTGDLQQAKVF 49
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+S+ GD+ +E + GL ++RS++G+R++LR TPEI F DES + G+R+ ++L +
Sbjct: 50 ISILGDEEQRENTLKGLAKAKGFIRSEIGQRIRLRKTPEIIFEFDESIDYGNRIESLLHQ 109
Query: 189 IKAEKEAAKSKNKE 202
I E+++ + +N+E
Sbjct: 110 IHNEEKSKEDRNEE 123
>gi|304316861|ref|YP_003852006.1| ribosome-binding factor A [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778363|gb|ADL68922.1| ribosome-binding factor A [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 119
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 73/118 (61%), Gaps = 13/118 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R ++++I++E+S M+ + D +S++T+I+D+EV+ DL+ K+Y
Sbjct: 4 RSGRLSEEIKKEVSKMIFEEI-------------KDPRISNMTSITDIEVTKDLRYAKIY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
+SV+G+D K+ + GLKS ++R +LG+R+KLR TPE+ F D S E G+ + IL
Sbjct: 51 ISVYGNDDEKKSTLEGLKSATGFIRHELGKRIKLRYTPELIFEIDNSIEYGAHISKIL 108
>gi|167040281|ref|YP_001663266.1| ribosome-binding factor A [Thermoanaerobacter sp. X514]
gi|256750793|ref|ZP_05491678.1| ribosome-binding factor A [Thermoanaerobacter ethanolicus CCSD1]
gi|300914365|ref|ZP_07131681.1| ribosome-binding factor A [Thermoanaerobacter sp. X561]
gi|307724399|ref|YP_003904150.1| ribosome-binding factor A [Thermoanaerobacter sp. X513]
gi|392940955|ref|ZP_10306599.1| ribosome-binding factor A [Thermoanaerobacter siderophilus SR4]
gi|166854521|gb|ABY92930.1| ribosome-binding factor A [Thermoanaerobacter sp. X514]
gi|256750376|gb|EEU63395.1| ribosome-binding factor A [Thermoanaerobacter ethanolicus CCSD1]
gi|300889300|gb|EFK84446.1| ribosome-binding factor A [Thermoanaerobacter sp. X561]
gi|307581460|gb|ADN54859.1| ribosome-binding factor A [Thermoanaerobacter sp. X513]
gi|392292705|gb|EIW01149.1| ribosome-binding factor A [Thermoanaerobacter siderophilus SR4]
Length = 119
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 70/114 (61%), Gaps = 13/114 (11%)
Query: 73 VAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVF 132
++++++RE+S M+L + D + ++ +I+D+EV+ DL+ KVYVS++
Sbjct: 8 LSEEMKREISKMILEEI-------------KDPRIKAMVSITDIEVTKDLRYAKVYVSIY 54
Query: 133 GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
G + K+ GLKS A Y+R ++GRR+K+R TPEI F D S E G+ + IL
Sbjct: 55 GSEEDKQETFEGLKSAAGYIRHEIGRRIKMRYTPEIIFELDRSIEYGAHISEIL 108
>gi|326389434|ref|ZP_08211001.1| ribosome-binding factor A [Thermoanaerobacter ethanolicus JW 200]
gi|325994439|gb|EGD52864.1| ribosome-binding factor A [Thermoanaerobacter ethanolicus JW 200]
Length = 119
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 70/114 (61%), Gaps = 13/114 (11%)
Query: 73 VAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVF 132
++++++RE+S M+L + D + ++ +I+D+EV+ DL+ KVYVS++
Sbjct: 8 LSEEMKREISKMILEEI-------------KDPRIKAMVSITDIEVTKDLRYAKVYVSIY 54
Query: 133 GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
G + K+ GLKS A Y+R ++GRR+K+R TPEI F D S E G+ + IL
Sbjct: 55 GSEEDKQETFEGLKSAAGYIRHEIGRRIKMRYTPEIIFELDRSIEYGAHISEIL 108
>gi|229098280|ref|ZP_04229227.1| Ribosome-binding factor A [Bacillus cereus Rock3-29]
gi|229104373|ref|ZP_04235042.1| Ribosome-binding factor A [Bacillus cereus Rock3-28]
gi|229117297|ref|ZP_04246675.1| Ribosome-binding factor A [Bacillus cereus Rock1-3]
gi|407706271|ref|YP_006829856.1| N-acetyltransferase [Bacillus thuringiensis MC28]
gi|423378350|ref|ZP_17355634.1| ribosome-binding factor A [Bacillus cereus BAG1O-2]
gi|423441458|ref|ZP_17418364.1| ribosome-binding factor A [Bacillus cereus BAG4X2-1]
gi|423448316|ref|ZP_17425195.1| ribosome-binding factor A [Bacillus cereus BAG5O-1]
gi|423464532|ref|ZP_17441300.1| ribosome-binding factor A [Bacillus cereus BAG6O-1]
gi|423533874|ref|ZP_17510292.1| ribosome-binding factor A [Bacillus cereus HuB2-9]
gi|423540857|ref|ZP_17517248.1| ribosome-binding factor A [Bacillus cereus HuB4-10]
gi|423547095|ref|ZP_17523453.1| ribosome-binding factor A [Bacillus cereus HuB5-5]
gi|423615928|ref|ZP_17591762.1| ribosome-binding factor A [Bacillus cereus VD115]
gi|423623113|ref|ZP_17598891.1| ribosome-binding factor A [Bacillus cereus VD148]
gi|228666197|gb|EEL21661.1| Ribosome-binding factor A [Bacillus cereus Rock1-3]
gi|228679071|gb|EEL33279.1| Ribosome-binding factor A [Bacillus cereus Rock3-28]
gi|228685178|gb|EEL39109.1| Ribosome-binding factor A [Bacillus cereus Rock3-29]
gi|401128910|gb|EJQ36593.1| ribosome-binding factor A [Bacillus cereus BAG5O-1]
gi|401172045|gb|EJQ79266.1| ribosome-binding factor A [Bacillus cereus HuB4-10]
gi|401178816|gb|EJQ85989.1| ribosome-binding factor A [Bacillus cereus HuB5-5]
gi|401259886|gb|EJR66060.1| ribosome-binding factor A [Bacillus cereus VD148]
gi|401260465|gb|EJR66638.1| ribosome-binding factor A [Bacillus cereus VD115]
gi|401636616|gb|EJS54370.1| ribosome-binding factor A [Bacillus cereus BAG1O-2]
gi|402418119|gb|EJV50419.1| ribosome-binding factor A [Bacillus cereus BAG4X2-1]
gi|402420799|gb|EJV53070.1| ribosome-binding factor A [Bacillus cereus BAG6O-1]
gi|402464093|gb|EJV95793.1| ribosome-binding factor A [Bacillus cereus HuB2-9]
gi|407383956|gb|AFU14457.1| Ribosome-binding factor A [Bacillus thuringiensis MC28]
Length = 118
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 69/121 (57%), Gaps = 14/121 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R V +Q+++EL D +++ K+ V T++DV+VS DLQ+ KVY
Sbjct: 4 RANRVGEQMKKELGD-IISRKIKDPRV-------------GFVTVTDVQVSGDLQIAKVY 49
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+SV GDD KE + GL ++RS++G+R++LR TPEI F DES G R+ +L
Sbjct: 50 ISVLGDDEQKESTLKGLAKAKGFIRSEIGQRIRLRKTPEISFEFDESIGYGHRIDTLLHE 109
Query: 189 I 189
I
Sbjct: 110 I 110
>gi|138894785|ref|YP_001125238.1| ribosome-binding factor A [Geobacillus thermodenitrificans NG80-2]
gi|196247591|ref|ZP_03146293.1| ribosome-binding factor A [Geobacillus sp. G11MC16]
gi|166218441|sp|A4IMD9.1|RBFA_GEOTN RecName: Full=Ribosome-binding factor A
gi|134266298|gb|ABO66493.1| Ribosome-binding factor A [Geobacillus thermodenitrificans NG80-2]
gi|196212375|gb|EDY07132.1| ribosome-binding factor A [Geobacillus sp. G11MC16]
Length = 128
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 73/127 (57%), Gaps = 20/127 (15%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R V +Q+++ELSD++ L D + F T++DV V+ DLQ
Sbjct: 4 RATRVGEQMKKELSDIIGRKLKDPRIGFV-----------------TVTDVRVTGDLQQA 46
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
KVY+SVFGDD +E + L+ ++RS++G+R++LR TPEI F DE+ E GSR+ +
Sbjct: 47 KVYISVFGDDEQRENTLKALEKAKGFIRSEIGQRIRLRKTPEILFEIDETIEYGSRIERL 106
Query: 186 LDRIKAE 192
+ +I E
Sbjct: 107 IRQISDE 113
>gi|153938139|ref|YP_001391715.1| ribosome-binding factor A [Clostridium botulinum F str. Langeland]
gi|168180704|ref|ZP_02615368.1| ribosome-binding factor A [Clostridium botulinum NCTC 2916]
gi|168184623|ref|ZP_02619287.1| ribosome-binding factor A [Clostridium botulinum Bf]
gi|237795853|ref|YP_002863405.1| ribosome-binding factor A [Clostridium botulinum Ba4 str. 657]
gi|384462725|ref|YP_005675320.1| ribosome-binding factor A [Clostridium botulinum F str. 230613]
gi|421836063|ref|ZP_16270652.1| ribosome-binding factor A [Clostridium botulinum CFSAN001627]
gi|166218433|sp|A7GG05.1|RBFA_CLOBL RecName: Full=Ribosome-binding factor A
gi|259551954|sp|C3L0B5.1|RBFA_CLOB6 RecName: Full=Ribosome-binding factor A
gi|152934035|gb|ABS39533.1| ribosome-binding factor A [Clostridium botulinum F str. Langeland]
gi|182668591|gb|EDT80570.1| ribosome-binding factor A [Clostridium botulinum NCTC 2916]
gi|182672289|gb|EDT84250.1| ribosome-binding factor A [Clostridium botulinum Bf]
gi|229261048|gb|ACQ52081.1| ribosome-binding factor A [Clostridium botulinum Ba4 str. 657]
gi|295319742|gb|ADG00120.1| ribosome-binding factor A [Clostridium botulinum F str. 230613]
gi|409742150|gb|EKN41665.1| ribosome-binding factor A [Clostridium botulinum CFSAN001627]
Length = 120
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 73/122 (59%), Gaps = 13/122 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + +++++E+S+++ D D LS++ +++DV V+ DL+ KVY
Sbjct: 5 RAGRINEEVKKEVSNIIHNDI-------------KDPRLSAMVSVTDVNVTKDLKYAKVY 51
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VS+FG+++ KE ++ LKS ++R ++GRR+KLR TPE+ D S ERG + +L
Sbjct: 52 VSIFGNEKAKEESLQALKSSVGFIRKEVGRRVKLRNTPEVIIEVDNSIERGMHIDELLHS 111
Query: 189 IK 190
IK
Sbjct: 112 IK 113
>gi|148380372|ref|YP_001254913.1| ribosome-binding factor A [Clostridium botulinum A str. ATCC 3502]
gi|153933206|ref|YP_001384592.1| ribosome-binding factor A [Clostridium botulinum A str. ATCC 19397]
gi|153935306|ref|YP_001388108.1| ribosome-binding factor A [Clostridium botulinum A str. Hall]
gi|226949770|ref|YP_002804861.1| ribosome-binding factor A [Clostridium botulinum A2 str. Kyoto]
gi|387818639|ref|YP_005678986.1| ribosome-binding factor A [Clostridium botulinum H04402 065]
gi|166218431|sp|A7FVZ2.1|RBFA_CLOB1 RecName: Full=Ribosome-binding factor A
gi|166218432|sp|A5I4J2.1|RBFA_CLOBH RecName: Full=Ribosome-binding factor A
gi|254789742|sp|C1FS58.1|RBFA_CLOBJ RecName: Full=Ribosome-binding factor A
gi|148289856|emb|CAL83964.1| ribosome-binding factor A [Clostridium botulinum A str. ATCC 3502]
gi|152929250|gb|ABS34750.1| ribosome-binding factor A [Clostridium botulinum A str. ATCC 19397]
gi|152931220|gb|ABS36719.1| ribosome-binding factor A [Clostridium botulinum A str. Hall]
gi|226844456|gb|ACO87122.1| ribosome-binding factor A [Clostridium botulinum A2 str. Kyoto]
gi|322806683|emb|CBZ04252.1| ribosome-binding factor A [Clostridium botulinum H04402 065]
Length = 120
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 73/122 (59%), Gaps = 13/122 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + +++++E+S+++ D D LS++ +++DV V+ DL+ KVY
Sbjct: 5 RAGRINEEVKKEVSNIIHNDI-------------KDPRLSAMVSVTDVNVTKDLKYAKVY 51
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VS+FG+++ KE ++ LKS ++R ++GRR+KLR TPE+ D S ERG + +L
Sbjct: 52 VSIFGNEKAKEESLEALKSSVGFIRKEVGRRVKLRNTPEVIIEVDNSIERGMHIDELLHS 111
Query: 189 IK 190
IK
Sbjct: 112 IK 113
>gi|345017701|ref|YP_004820054.1| ribosome-binding factor A [Thermoanaerobacter wiegelii Rt8.B1]
gi|344033044|gb|AEM78770.1| Ribosome-binding factor A [Thermoanaerobacter wiegelii Rt8.B1]
Length = 119
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 70/114 (61%), Gaps = 13/114 (11%)
Query: 73 VAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVF 132
++++++RE+S M+L + D + ++ +I+D+EV+ DL+ KVYVS++
Sbjct: 8 LSEEMKREISKMILEEI-------------KDPRIKAMVSITDIEVTKDLRYAKVYVSIY 54
Query: 133 GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
G + K+ GLKS A Y+R ++GRR+K+R TPEI F D S E G+ + IL
Sbjct: 55 GSEEDKQETFEGLKSAAGYIRHEIGRRIKMRYTPEIIFELDRSIEYGAYISEIL 108
>gi|433445986|ref|ZP_20410117.1| ribosome-binding factor A [Anoxybacillus flavithermus TNO-09.006]
gi|432000731|gb|ELK21623.1| ribosome-binding factor A [Anoxybacillus flavithermus TNO-09.006]
Length = 119
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 74/129 (57%), Gaps = 20/129 (15%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R V +Q+++ELSD++ L D + F T++DV V+ DLQ
Sbjct: 4 RATRVGEQMKKELSDIIGRKLKDPRIGFV-----------------TVTDVRVTGDLQQA 46
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
KVY+SV GD+ K+ + GL ++RS++G+R++LR TPEI F DE+ + G R+ ++
Sbjct: 47 KVYISVLGDEEQKKNTLKGLAKATGFIRSEIGQRIRLRKTPEIYFEIDETIDYGQRIESL 106
Query: 186 LDRIKAEKE 194
+ +I EKE
Sbjct: 107 IKQISEEKE 115
>gi|187778990|ref|ZP_02995463.1| hypothetical protein CLOSPO_02585 [Clostridium sporogenes ATCC
15579]
gi|187772615|gb|EDU36417.1| ribosome-binding factor A [Clostridium sporogenes ATCC 15579]
Length = 120
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 59/87 (67%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLR 163
D LS++ +++DV V+ DL+ KVYVS+FG+++ KE ++ LKS ++R ++GRR+KLR
Sbjct: 27 DPRLSAMVSVTDVNVTKDLKYAKVYVSIFGNEKAKEESLQALKSSVGFIRKEIGRRVKLR 86
Query: 164 LTPEIRFIEDESFERGSRVIAILDRIK 190
TPE+ D S ERG + +L IK
Sbjct: 87 NTPEVIIEVDNSIERGMHIDELLHSIK 113
>gi|253580819|ref|ZP_04858082.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251847889|gb|EES75856.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 131
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 59/97 (60%)
Query: 110 LTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIR 169
+T++ VEV+ DL+ + Y+SV G+ KE I GL S Y+R QL R + LR TPEIR
Sbjct: 35 MTSVMAVEVAPDLKTCRAYISVLGEKEAKEATIKGLNSAEGYIRRQLARNLNLRNTPEIR 94
Query: 170 FIEDESFERGSRVIAILDRIKAEKEAAKSKNKEQFES 206
FI DES E G + ++D + + + +++EQ E+
Sbjct: 95 FILDESIEYGVNMSKLIDDVTKKDSNSHRQDEEQDEN 131
>gi|424827583|ref|ZP_18252370.1| ribosome-binding factor A [Clostridium sporogenes PA 3679]
gi|365980023|gb|EHN16064.1| ribosome-binding factor A [Clostridium sporogenes PA 3679]
Length = 120
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 59/87 (67%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLR 163
D LS++ +++DV V+ DL+ KVYVS+FG+++ KE ++ LKS ++R ++GRR+KLR
Sbjct: 27 DPRLSAMVSVTDVNVTKDLKYAKVYVSIFGNEKAKEESLEALKSSVGFIRKEIGRRVKLR 86
Query: 164 LTPEIRFIEDESFERGSRVIAILDRIK 190
TPE+ D S ERG + +L IK
Sbjct: 87 NTPEVIIEVDNSIERGMHIDELLHSIK 113
>gi|295110272|emb|CBL24225.1| ribosome-binding factor A [Ruminococcus obeum A2-162]
Length = 127
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 61/94 (64%), Gaps = 1/94 (1%)
Query: 110 LTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIR 169
+T++ VEV+ DL+ + Y+SV G+ KE I GL S Y+R QL R + LR TPEIR
Sbjct: 35 MTSVMAVEVAPDLKTCRAYISVLGNQEAKEATIRGLNSAEGYIRRQLARNLNLRNTPEIR 94
Query: 170 FIEDESFERGSRVIAILDRIKAEKEAAKSKNKEQ 203
FI DES E G + ++D + A+++A+ K++E+
Sbjct: 95 FILDESIEYGVNMSKLIDDV-AKRDASLGKSEEE 127
>gi|154485023|ref|ZP_02027471.1| hypothetical protein EUBVEN_02741 [Eubacterium ventriosum ATCC
27560]
gi|149733976|gb|EDM50095.1| ribosome-binding factor A [Eubacterium ventriosum ATCC 27560]
Length = 92
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 61/96 (63%), Gaps = 7/96 (7%)
Query: 110 LTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIR 169
+T+++ VEV+ DL+ KVY+SV GD+ K +AGLKS A ++R +L R + LR TPE++
Sbjct: 1 MTSVTGVEVTPDLKFCKVYISVLGDEEAKADTMAGLKSAAGFIRRELARTVNLRNTPELK 60
Query: 170 FIEDESFERGSRVIAILDRIKAEKEAAKSKNKEQFE 205
F+ D+S E G ++ ++D + NKE+ E
Sbjct: 61 FVMDQSIEYGMKMSKLIDEVNG-------NNKEESE 89
>gi|167037620|ref|YP_001665198.1| ribosome-binding factor A [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|289578385|ref|YP_003477012.1| ribosome-binding factor A [Thermoanaerobacter italicus Ab9]
gi|297544661|ref|YP_003676963.1| ribosome-binding factor A [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
gi|320116035|ref|YP_004186194.1| ribosome-binding factor A [Thermoanaerobacter brockii subsp. finnii
Ako-1]
gi|166856454|gb|ABY94862.1| ribosome-binding factor A [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|289528098|gb|ADD02450.1| ribosome-binding factor A [Thermoanaerobacter italicus Ab9]
gi|296842436|gb|ADH60952.1| ribosome-binding factor A [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
gi|319929126|gb|ADV79811.1| ribosome-binding factor A [Thermoanaerobacter brockii subsp. finnii
Ako-1]
Length = 119
Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 71/118 (60%), Gaps = 13/118 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R ++++I++E+S M+L + D + ++ +I+D+E++ DL+ KVY
Sbjct: 4 RNNRLSEEIKKEISKMILEEI-------------KDPRIKAMVSITDIELTKDLRYAKVY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
VS++G++ K GLKS A Y+R ++GRR+K+R TPEI F D S E G+ + IL
Sbjct: 51 VSIYGNEEDKRETFEGLKSAAGYIRHEIGRRIKMRYTPEIIFELDHSIEYGAHISEIL 108
>gi|32307616|gb|AAP79213.1| ribosome-binding factor A [Bigelowiella natans]
Length = 198
Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 86/148 (58%), Gaps = 7/148 (4%)
Query: 55 SPTRKTVKCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTIS 114
S TR+TV C A+PRR+ V ++IQRE+ D+L+ D+ + A+ P+ R + ++ +++
Sbjct: 52 SSTRRTVSCGADPRRIGRVGREIQREMGDLLVNDRNVLAAIDPKYDDDDIRNM-TIASVT 110
Query: 115 DVEVSADLQVVKVYVSVFGDDRGKEVAIAG-LKSKAKYVRSQLGRRMKLRLTPEIRFIED 173
+V++S DL V K+Y+ G + I L +K Y+R + +R+ LR +PE+ F ED
Sbjct: 111 EVQMSRDLSVAKLYLMFSGGTKKSYQPILDRLNAKKGYIRRVVSQRLNLRRSPELVFYED 170
Query: 174 ESFERG---SRVIAIL--DRIKAEKEAA 196
+ R++A+L DR EK+ A
Sbjct: 171 NTLNEADEMKRIMAVLREDREFREKQLA 198
>gi|288556940|ref|YP_003428875.1| ribosome-binding factor A [Bacillus pseudofirmus OF4]
gi|288548100|gb|ADC51983.1| ribosome-binding factor A [Bacillus pseudofirmus OF4]
Length = 113
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 75/124 (60%), Gaps = 15/124 (12%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
M+N R V +Q+++ELSD+++ + L + + S TI+ V+V+ DLQ
Sbjct: 1 MSNVR-AHRVGEQMKKELSDIIMRE-------LKDPRI-------SFVTITGVDVTGDLQ 45
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
KV+++V GDD KE + GL ++RS++G+R++LR TPEI F DES E G+R+
Sbjct: 46 QAKVFITVLGDDAQKESTLKGLSKAKGFIRSEIGKRIRLRKTPEITFEFDESIEYGNRIE 105
Query: 184 AILD 187
+++
Sbjct: 106 TLIN 109
>gi|294500895|ref|YP_003564595.1| ribosome-binding factor A [Bacillus megaterium QM B1551]
gi|295706241|ref|YP_003599316.1| ribosome-binding factor A [Bacillus megaterium DSM 319]
gi|384045254|ref|YP_005493271.1| Ribosome-binding factor A [Bacillus megaterium WSH-002]
gi|294350832|gb|ADE71161.1| ribosome-binding factor A [Bacillus megaterium QM B1551]
gi|294803900|gb|ADF40966.1| ribosome-binding factor A [Bacillus megaterium DSM 319]
gi|345442945|gb|AEN87962.1| Ribosome-binding factor A [Bacillus megaterium WSH-002]
Length = 121
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 56/84 (66%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEI 168
T++DV+VS DLQ KVY+SV GD +E + GL ++RS++G+R++LR TPEI
Sbjct: 30 GFVTVTDVQVSGDLQQAKVYISVLGDAEQRENTLKGLAKAKGFIRSEIGQRIRLRKTPEI 89
Query: 169 RFIEDESFERGSRVIAILDRIKAE 192
F DES + G+R+ ++L IK E
Sbjct: 90 TFEFDESIDYGNRIESLLHEIKKE 113
>gi|312111633|ref|YP_003989949.1| ribosome-binding factor A [Geobacillus sp. Y4.1MC1]
gi|336236008|ref|YP_004588624.1| ribosome-binding factor A [Geobacillus thermoglucosidasius
C56-YS93]
gi|423720552|ref|ZP_17694734.1| ribosome-binding factor A [Geobacillus thermoglucosidans
TNO-09.020]
gi|311216734|gb|ADP75338.1| ribosome-binding factor A [Geobacillus sp. Y4.1MC1]
gi|335362863|gb|AEH48543.1| ribosome-binding factor A [Geobacillus thermoglucosidasius
C56-YS93]
gi|383365905|gb|EID43196.1| ribosome-binding factor A [Geobacillus thermoglucosidans
TNO-09.020]
Length = 126
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 14/123 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R V +Q+++ELSD++ L + +G T++DV V+ DLQ KVY
Sbjct: 4 RATRVGEQMKKELSDIIGRK-------LKDPRIG-------FVTVTDVRVTGDLQQAKVY 49
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+S+FGD+ ++ + GL+ ++RS++G+R++LR TPEI F DES E G+R+ ++ +
Sbjct: 50 ISIFGDEEQRQNTLKGLEKAKGFIRSEIGQRIRLRKTPEIFFEIDESIEYGTRIEQLIRQ 109
Query: 189 IKA 191
I A
Sbjct: 110 ISA 112
>gi|23099055|ref|NP_692521.1| ribosome-binding factor A [Oceanobacillus iheyensis HTE831]
gi|29427761|sp|Q8EQT9.1|RBFA_OCEIH RecName: Full=Ribosome-binding factor A
gi|22777283|dbj|BAC13556.1| ribosome-binding factor A [Oceanobacillus iheyensis HTE831]
Length = 113
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 54/78 (69%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEI 168
T++DVEV+ DLQ KVY+SV GD++ K+ + GL ++RS++G R++LR TPEI
Sbjct: 31 GFVTVTDVEVTGDLQQAKVYISVLGDEKKKQDTLLGLSKAKGFIRSEIGNRIRLRKTPEI 90
Query: 169 RFIEDESFERGSRVIAIL 186
F DE+ E+G+R+ IL
Sbjct: 91 TFEFDEALEQGNRIETIL 108
>gi|56379642|dbj|BAD75550.1| ribosome-binding factor A [Geobacillus kaustophilus HTA426]
Length = 112
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 61/94 (64%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEI 168
T++DV V+ DLQ KVY+SV GDD+ +E + L+ ++RS++G+R++LR TPEI
Sbjct: 15 GFVTVTDVRVTGDLQQAKVYISVLGDDKQRENTLKALEKAKGFIRSEIGQRIRLRKTPEI 74
Query: 169 RFIEDESFERGSRVIAILDRIKAEKEAAKSKNKE 202
F DE+ E GSR+ ++ +I ++ AK + E
Sbjct: 75 FFEIDETMEYGSRIEQLIRQISSDDHPAKEADGE 108
>gi|147677605|ref|YP_001211820.1| ribosome-binding factor A [Pelotomaculum thermopropionicum SI]
gi|189039550|sp|A5D2S1.1|RBFA_PELTS RecName: Full=Ribosome-binding factor A
gi|146273702|dbj|BAF59451.1| ribosome-binding factor A [Pelotomaculum thermopropionicum SI]
Length = 119
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 72/122 (59%), Gaps = 14/122 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + VA+ I++E+SDML + L + +G TI+ VEVS DL+ +Y
Sbjct: 4 RSERVAEAIKKEVSDMLRNE-------LKDPRIG-------FVTITSVEVSKDLRYANIY 49
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
SVFG ++ I LK ++R +LG+R++LR TPEI F D+S RGSRV+A+++
Sbjct: 50 ASVFGSPDDQKETIEALKKAQGFIRGELGKRIRLRYTPEITFKLDQSIGRGSRVLALMEE 109
Query: 189 IK 190
++
Sbjct: 110 VR 111
>gi|20807839|ref|NP_623010.1| ribosome-binding factor A [Thermoanaerobacter tengcongensis MB4]
gi|22096031|sp|Q8RA38.1|RBFA_THETN RecName: Full=Ribosome-binding factor A
gi|20516401|gb|AAM24614.1| Ribosome-binding factor A [Thermoanaerobacter tengcongensis MB4]
Length = 122
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 70/114 (61%), Gaps = 13/114 (11%)
Query: 73 VAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVF 132
+++++++E+S M+L + D + ++ +I+D+EV+ DL+ KVYVS++
Sbjct: 11 LSEELKKEISKMILEEI-------------KDPRIKAMVSITDIEVTKDLRYAKVYVSIY 57
Query: 133 GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
G + K GLKS A Y+R ++GRR+K+R TPEI F D S E G+++ IL
Sbjct: 58 GSEEEKRETFEGLKSAAGYIRHEIGRRIKMRYTPEIIFELDHSIEYGAKISEIL 111
>gi|72383316|ref|YP_292671.1| ribosome-binding factor A [Prochlorococcus marinus str. NATL2A]
gi|123620526|sp|Q46HR0.1|RBFA_PROMT RecName: Full=Ribosome-binding factor A
gi|72003166|gb|AAZ58968.1| ribosome-binding factor A [Prochlorococcus marinus str. NATL2A]
Length = 123
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 83/132 (62%), Gaps = 12/132 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MAN RRV+ +A ++RE+S++L+ + +R ++ TI+ VEVS DLQ
Sbjct: 1 MANSRRVEKLAALLKREVSELLVN------------GIRDERIHQAMITITSVEVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K+++S+FG+++ K+ + GL+ ++R++L +R+++R +PE+ F D+ +G V+
Sbjct: 49 HAKIFISLFGEEKKKDEVLVGLEEAKGFIRAELAQRLQMRRSPELVFKIDKGMTKGPAVL 108
Query: 184 AILDRIKAEKEA 195
+L+ ++ E+++
Sbjct: 109 DLLNALELERKS 120
>gi|357039351|ref|ZP_09101145.1| Ribosome-binding factor A [Desulfotomaculum gibsoniae DSM 7213]
gi|355358250|gb|EHG06018.1| Ribosome-binding factor A [Desulfotomaculum gibsoniae DSM 7213]
Length = 115
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 71/120 (59%), Gaps = 14/120 (11%)
Query: 73 VAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVF 132
+A+ +++E+SD+LL + L + +G TI+ V+VS DL+ K+YVSV
Sbjct: 8 LAEAVKKEMSDLLLNE-------LKDPRVG-------FATITGVDVSGDLKYAKIYVSVL 53
Query: 133 GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRIKAE 192
G+ + + LK ++R++LGRR++LR PEI F DES + G RV+ +LD +K +
Sbjct: 54 GNHEQRHNTMLALKKAQGFIRTELGRRIRLRHVPEISFHLDESLDHGVRVMELLDEVKGK 113
>gi|260589526|ref|ZP_05855439.1| ribosome-binding factor A [Blautia hansenii DSM 20583]
gi|260540094|gb|EEX20663.1| ribosome-binding factor A [Blautia hansenii DSM 20583]
Length = 128
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 57/94 (60%)
Query: 110 LTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIR 169
+T+++ VEV+ DL+ + Y+SV G++ K I GLKS Y+R QL + + LR TPEIR
Sbjct: 35 MTSVTAVEVAPDLKTCRAYISVMGNEEAKNNTIVGLKSAEGYIRRQLAKNINLRNTPEIR 94
Query: 170 FIEDESFERGSRVIAILDRIKAEKEAAKSKNKEQ 203
FI DES E G + ++D + ++E + Q
Sbjct: 95 FILDESIEYGVAMSKLIDEVTGKEEVQEDGENNQ 128
>gi|402300757|ref|ZP_10820215.1| ribosome-binding factor A [Bacillus alcalophilus ATCC 27647]
gi|401724114|gb|EJS97509.1| ribosome-binding factor A [Bacillus alcalophilus ATCC 27647]
Length = 119
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 77/129 (59%), Gaps = 15/129 (11%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
M+N R V +Q+++ELSD+++ + L + + S T++ V+V+ DLQ
Sbjct: 1 MSNVR-AHRVGEQMKKELSDIIMRE-------LKDPRI-------SFVTVTGVDVTGDLQ 45
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
KVY++V G D KE + GL ++RS++G+R++LR TPE+ F D+S E G+R+
Sbjct: 46 QAKVYITVLGSDEQKEATLLGLSKAKGFMRSEIGKRIRLRKTPELIFEFDQSIEYGNRIE 105
Query: 184 AILDRIKAE 192
++L +I E
Sbjct: 106 SLLSKINQE 114
>gi|226226963|ref|YP_002761069.1| ribosome-binding factor A [Gemmatimonas aurantiaca T-27]
gi|259551997|sp|C1A8N9.1|RBFA_GEMAT RecName: Full=Ribosome-binding factor A
gi|226090154|dbj|BAH38599.1| ribosome-binding factor A [Gemmatimonas aurantiaca T-27]
Length = 146
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 75/133 (56%), Gaps = 15/133 (11%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGA-DRYLSSLTTISDVEVSADL 122
M RR VA+ I+ E++ L + GA D + + T++ VEV+ DL
Sbjct: 1 MGEVRRPDRVAEAIREEVATFL--------------SEGAKDPRIRAFVTVTAVEVTRDL 46
Query: 123 QVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
+ V+VS+ GDD K+ AGL S A ++RSQLG+ ++LR PEI F DES R SR+
Sbjct: 47 RHATVFVSLMGDDADKKSTTAGLASVASHLRSQLGKSLRLRSAPEIHFRTDESVARASRI 106
Query: 183 IAILDRIKAEKEA 195
+L +I+ E+EA
Sbjct: 107 EHLLAKIRDEREA 119
>gi|212639519|ref|YP_002316039.1| ribosome-binding factor A [Anoxybacillus flavithermus WK1]
gi|212560999|gb|ACJ34054.1| Ribosome-binding factor A [Anoxybacillus flavithermus WK1]
Length = 127
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 74/129 (57%), Gaps = 20/129 (15%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R V +Q+++ELSD++ L D + F T++DV V+ DLQ
Sbjct: 12 RATRVGEQMKKELSDIIGRKLKDPRIGFV-----------------TVTDVRVTGDLQQA 54
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
KVY+SV GD+ K+ + GL ++RS++G+R++LR TPEI F DE+ + G R+ ++
Sbjct: 55 KVYISVLGDEEQKKNTLKGLAKATGFIRSEIGQRIRLRKTPEIYFEIDETIDYGQRIESL 114
Query: 186 LDRIKAEKE 194
+ +I EKE
Sbjct: 115 IKQISEEKE 123
>gi|302392346|ref|YP_003828166.1| ribosome-binding factor A [Acetohalobium arabaticum DSM 5501]
gi|302204423|gb|ADL13101.1| ribosome-binding factor A [Acetohalobium arabaticum DSM 5501]
Length = 122
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 82/139 (58%), Gaps = 20/139 (14%)
Query: 64 MAN--PRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSAD 121
M N PRRV A+ I++E+S ML + + + +G TI+DVEVS D
Sbjct: 1 MGNYRPRRV---AELIKKEVSQMLQQE-------IKDPRIG-------FVTITDVEVSED 43
Query: 122 LQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSR 181
L+ KV+VSV + KE + GL++ Y+R +LG+R++LR TPEI F D+S +RG+R
Sbjct: 44 LRHAKVFVSVLDAEETKEETMEGLENAVGYIRRELGQRIRLRHTPEILFRYDDSIKRGAR 103
Query: 182 VIAIL-DRIKAEKEAAKSK 199
+ IL D + EKEA K +
Sbjct: 104 IFEILKDLDQDEKEADKKE 122
>gi|423522359|ref|ZP_17498832.1| ribosome-binding factor A [Bacillus cereus HuA4-10]
gi|423558626|ref|ZP_17534928.1| ribosome-binding factor A [Bacillus cereus MC67]
gi|401175053|gb|EJQ82256.1| ribosome-binding factor A [Bacillus cereus HuA4-10]
gi|401191894|gb|EJQ98916.1| ribosome-binding factor A [Bacillus cereus MC67]
Length = 118
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 70/124 (56%), Gaps = 20/124 (16%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R V +Q+++EL D++ + D + F T++DV+VS DLQ+
Sbjct: 4 RANRVGEQMKKELGDIISRKIKDPRIGFV-----------------TVTDVQVSGDLQIA 46
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
KVY+SV GD+ KE + GL ++RS++G+R++LR TPEI F DES G R+ +
Sbjct: 47 KVYISVLGDEEQKENTLKGLAKAKGFIRSEIGQRIRLRKTPEISFEFDESIGYGHRIDTL 106
Query: 186 LDRI 189
L +I
Sbjct: 107 LHQI 110
>gi|28210962|ref|NP_781906.1| ribosome-binding factor A [Clostridium tetani E88]
gi|32171612|sp|Q895J7.1|RBFA_CLOTE RecName: Full=Ribosome-binding factor A
gi|28203401|gb|AAO35843.1| ribosome-binding factor A [Clostridium tetani E88]
Length = 121
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 59/84 (70%)
Query: 107 LSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTP 166
+S++ +++ V+V+ D + KVYVS+FGD++ KE + LKS + ++R ++G R+KLR TP
Sbjct: 30 ISAMVSVTKVDVTKDQRYAKVYVSIFGDEKSKEETLEALKSSSGFIRREVGHRIKLRYTP 89
Query: 167 EIRFIEDESFERGSRVIAILDRIK 190
EI D+S E G + +ILD+IK
Sbjct: 90 EIIIQNDDSIEHGMHIDSILDKIK 113
>gi|389815276|ref|ZP_10206622.1| ribosome-binding factor A [Planococcus antarcticus DSM 14505]
gi|388466055|gb|EIM08364.1| ribosome-binding factor A [Planococcus antarcticus DSM 14505]
Length = 116
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 72/129 (55%), Gaps = 20/129 (15%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R VA+Q+++ELSD++ L D + F T++DVEV+ DLQ
Sbjct: 4 RANRVAEQMKKELSDIISRKLKDPRIGFV-----------------TVTDVEVTGDLQQA 46
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
VY+SV G+D KE + GL ++RS++G+R++LR TPE+ F D S G+R+ +
Sbjct: 47 TVYISVLGEDHAKEQTLLGLTKSKGFIRSEIGQRIRLRKTPELSFEIDSSVAYGNRIDTL 106
Query: 186 LDRIKAEKE 194
L I+ KE
Sbjct: 107 LRGIQEPKE 115
>gi|399055579|ref|ZP_10743274.1| ribosome-binding factor A [Brevibacillus sp. CF112]
gi|433546005|ref|ZP_20502343.1| ribosome binding factor A [Brevibacillus agri BAB-2500]
gi|398046788|gb|EJL39372.1| ribosome-binding factor A [Brevibacillus sp. CF112]
gi|432182621|gb|ELK40184.1| ribosome binding factor A [Brevibacillus agri BAB-2500]
Length = 121
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 78/129 (60%), Gaps = 14/129 (10%)
Query: 66 NPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
N R+ V ++I++ELS +LQ L + +G T++DVEVS+DLQ+
Sbjct: 2 NKTRMSRVGEEIKKELS------LILQRG-LKDPRVG-------FVTVTDVEVSSDLQLA 47
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
KV+VS+FG + ++ ++AGL Y+R+++G+R+KLR P+ F DES + GS++ +I
Sbjct: 48 KVFVSIFGSEEQRKDSLAGLTKAKGYLRTEIGKRVKLRHIPDFVFKLDESIDYGSKIESI 107
Query: 186 LDRIKAEKE 194
L I E E
Sbjct: 108 LREISTEGE 116
>gi|323489592|ref|ZP_08094819.1| ribosome-binding factor A [Planococcus donghaensis MPA1U2]
gi|323396723|gb|EGA89542.1| ribosome-binding factor A [Planococcus donghaensis MPA1U2]
gi|456012656|gb|EMF46344.1| Ribosome-binding factor A [Planococcus halocryophilus Or1]
Length = 116
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 72/129 (55%), Gaps = 20/129 (15%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R VA+Q+++ELSD++ L D + F T++DVEV+ DLQ
Sbjct: 4 RANRVAEQMKKELSDIISRKLKDPRIGFV-----------------TVTDVEVTGDLQQA 46
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
VY+SV G+D KE + GL ++RS++G+R++LR TPE+ F D S G+R+ +
Sbjct: 47 TVYISVLGEDHAKEQTLLGLTKSKGFIRSEIGQRIRLRKTPELSFEIDSSVAYGNRIDTL 106
Query: 186 LDRIKAEKE 194
L I+ KE
Sbjct: 107 LRDIQEPKE 115
>gi|374622803|ref|ZP_09695324.1| ribosome-binding factor A [Ectothiorhodospira sp. PHS-1]
gi|373941925|gb|EHQ52470.1| ribosome-binding factor A [Ectothiorhodospira sp. PHS-1]
Length = 129
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 80/139 (57%), Gaps = 17/139 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + V QIQREL++++ + L + +G + TI+ VEVS DL KV+
Sbjct: 7 RAQRVGDQIQRELAELVREE-------LKDPRVG-------MLTIAGVEVSRDLAHAKVF 52
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+V GDD +V GL+ A ++R +LGRRM++R PE+ F D++ G+R+ A++DR
Sbjct: 53 FTVLGDDEAIKVTSEGLRKAAGFLRRELGRRMRIRSIPELHFHYDDTQREGARISALIDR 112
Query: 189 IKAEKEAAKSKNKEQFESP 207
AE K+++++ + P
Sbjct: 113 AVAED---KARHRDDTDDP 128
>gi|89101191|ref|ZP_01174022.1| ribosome-binding factor A [Bacillus sp. NRRL B-14911]
gi|89084100|gb|EAR63270.1| ribosome-binding factor A [Bacillus sp. NRRL B-14911]
Length = 112
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 62/94 (65%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEI 168
T++DV V+ DLQ VY+SV GD+ +E + GL ++RS++G+R++LR TPEI
Sbjct: 19 GFVTVTDVAVTGDLQQATVYISVLGDEEKRENTLKGLAKAKGFIRSEIGQRIRLRKTPEI 78
Query: 169 RFIEDESFERGSRVIAILDRIKAEKEAAKSKNKE 202
F DES + G+R+ +L +I+ E ++ + ++KE
Sbjct: 79 IFEFDESIDYGNRIDTLLHKIQEEGQSKEEQDKE 112
>gi|410460718|ref|ZP_11314392.1| ribosome-binding factor A [Bacillus azotoformans LMG 9581]
gi|409926772|gb|EKN63926.1| ribosome-binding factor A [Bacillus azotoformans LMG 9581]
Length = 116
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 78/134 (58%), Gaps = 21/134 (15%)
Query: 64 MANPRRVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSA 120
M N R + V +Q+++ELSD++ + D + F T++DV+V+
Sbjct: 1 MTNIRSTR-VGEQMKKELSDIIGRKIKDPRIGFV-----------------TVTDVQVTG 42
Query: 121 DLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGS 180
DLQ KV+++V G++ K+ + L ++RS++G+R++LR TPEI F DES E G+
Sbjct: 43 DLQQAKVFITVLGNEEQKQNTLTALAKANGFIRSEIGKRIRLRKTPEIFFEFDESIEYGN 102
Query: 181 RVIAILDRIKAEKE 194
R+ +L+++ EKE
Sbjct: 103 RIETLLEQLHKEKE 116
>gi|296132889|ref|YP_003640136.1| ribosome-binding factor A [Thermincola potens JR]
gi|296031467|gb|ADG82235.1| ribosome-binding factor A [Thermincola potens JR]
Length = 120
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 72/122 (59%), Gaps = 14/122 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R VA+ I++E++ ML + + + +G T++ VEV DL+ ++Y
Sbjct: 5 RASRVAEAIKKEVTQMLGGE-------IKDPRIG-------FVTVTGVEVCPDLRHARIY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+SV+G D K + L +VRS+LG+R++LR TPE+ F DES ERG+R++ +L+R
Sbjct: 51 ISVYGSDEEKAQTLQALNKAKGFVRSELGKRIRLRYTPEVEFRFDESIERGARIMELLNR 110
Query: 189 IK 190
++
Sbjct: 111 VQ 112
>gi|423612028|ref|ZP_17587889.1| ribosome-binding factor A [Bacillus cereus VD107]
gi|401247035|gb|EJR53379.1| ribosome-binding factor A [Bacillus cereus VD107]
Length = 118
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 69/124 (55%), Gaps = 20/124 (16%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R V +Q+++EL D++ + D + F T++DV+VS DLQ+
Sbjct: 4 RANRVGEQMKKELGDIISRKIKDPRIGFV-----------------TVTDVQVSGDLQIA 46
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
KVY+SV GD+ KE + GL ++RS++G+R++LR TPEI F DES G R+ +
Sbjct: 47 KVYISVLGDEEQKENTLKGLAKAKGFIRSEIGQRIRLRKTPEISFEFDESIGYGHRIDTL 106
Query: 186 LDRI 189
L I
Sbjct: 107 LHEI 110
>gi|30021900|ref|NP_833531.1| ribosome-binding factor A [Bacillus cereus ATCC 14579]
gi|163941548|ref|YP_001646432.1| ribosome-binding factor A [Bacillus weihenstephanensis KBAB4]
gi|206972662|ref|ZP_03233603.1| ribosome-binding factor A [Bacillus cereus AH1134]
gi|218235779|ref|YP_002368612.1| ribosome-binding factor A [Bacillus cereus B4264]
gi|218898963|ref|YP_002447374.1| ribosome-binding factor A [Bacillus cereus G9842]
gi|228902314|ref|ZP_04066471.1| Ribosome-binding factor A [Bacillus thuringiensis IBL 4222]
gi|228909635|ref|ZP_04073458.1| Ribosome-binding factor A [Bacillus thuringiensis IBL 200]
gi|228922565|ref|ZP_04085865.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228940899|ref|ZP_04103458.1| Ribosome-binding factor A [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228954087|ref|ZP_04116116.1| Ribosome-binding factor A [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|228960027|ref|ZP_04121691.1| Ribosome-binding factor A [Bacillus thuringiensis serovar pakistani
str. T13001]
gi|228966756|ref|ZP_04127800.1| Ribosome-binding factor A [Bacillus thuringiensis serovar sotto
str. T04001]
gi|228973828|ref|ZP_04134404.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228980417|ref|ZP_04140727.1| Ribosome-binding factor A [Bacillus thuringiensis Bt407]
gi|229012994|ref|ZP_04170159.1| Ribosome-binding factor A [Bacillus mycoides DSM 2048]
gi|229047497|ref|ZP_04193087.1| Ribosome-binding factor A [Bacillus cereus AH676]
gi|229061414|ref|ZP_04198759.1| Ribosome-binding factor A [Bacillus cereus AH603]
gi|229071309|ref|ZP_04204532.1| Ribosome-binding factor A [Bacillus cereus F65185]
gi|229081066|ref|ZP_04213576.1| Ribosome-binding factor A [Bacillus cereus Rock4-2]
gi|229111282|ref|ZP_04240835.1| Ribosome-binding factor A [Bacillus cereus Rock1-15]
gi|229129087|ref|ZP_04258060.1| Ribosome-binding factor A [Bacillus cereus BDRD-Cer4]
gi|229134618|ref|ZP_04263428.1| Ribosome-binding factor A [Bacillus cereus BDRD-ST196]
gi|229146382|ref|ZP_04274753.1| Ribosome-binding factor A [Bacillus cereus BDRD-ST24]
gi|229152010|ref|ZP_04280205.1| Ribosome-binding factor A [Bacillus cereus m1550]
gi|229168550|ref|ZP_04296273.1| Ribosome-binding factor A [Bacillus cereus AH621]
gi|229180087|ref|ZP_04307431.1| Ribosome-binding factor A [Bacillus cereus 172560W]
gi|229191980|ref|ZP_04318950.1| Ribosome-binding factor A [Bacillus cereus ATCC 10876]
gi|296504306|ref|YP_003666006.1| ribosome-binding factor A [Bacillus thuringiensis BMB171]
gi|365159412|ref|ZP_09355593.1| ribosome-binding factor A [Bacillus sp. 7_6_55CFAA_CT2]
gi|384187868|ref|YP_005573764.1| ribosome-binding factor A [Bacillus thuringiensis serovar chinensis
CT-43]
gi|402558863|ref|YP_006601587.1| ribosome-binding factor A [Bacillus thuringiensis HD-771]
gi|410676184|ref|YP_006928555.1| ribosome-binding factor A [Bacillus thuringiensis Bt407]
gi|423359153|ref|ZP_17336656.1| ribosome-binding factor A [Bacillus cereus VD022]
gi|423367854|ref|ZP_17345286.1| ribosome-binding factor A [Bacillus cereus VD142]
gi|423385314|ref|ZP_17362570.1| ribosome-binding factor A [Bacillus cereus BAG1X1-2]
gi|423412384|ref|ZP_17389504.1| ribosome-binding factor A [Bacillus cereus BAG3O-2]
gi|423425947|ref|ZP_17402978.1| ribosome-binding factor A [Bacillus cereus BAG3X2-2]
gi|423431831|ref|ZP_17408835.1| ribosome-binding factor A [Bacillus cereus BAG4O-1]
gi|423437266|ref|ZP_17414247.1| ribosome-binding factor A [Bacillus cereus BAG4X12-1]
gi|423452888|ref|ZP_17429741.1| ribosome-binding factor A [Bacillus cereus BAG5X1-1]
gi|423470025|ref|ZP_17446769.1| ribosome-binding factor A [Bacillus cereus BAG6O-2]
gi|423483401|ref|ZP_17460091.1| ribosome-binding factor A [Bacillus cereus BAG6X1-2]
gi|423488986|ref|ZP_17465668.1| ribosome-binding factor A [Bacillus cereus BtB2-4]
gi|423494711|ref|ZP_17471355.1| ribosome-binding factor A [Bacillus cereus CER057]
gi|423498497|ref|ZP_17475114.1| ribosome-binding factor A [Bacillus cereus CER074]
gi|423503512|ref|ZP_17480104.1| ribosome-binding factor A [Bacillus cereus HD73]
gi|423511845|ref|ZP_17488376.1| ribosome-binding factor A [Bacillus cereus HuA2-1]
gi|423518501|ref|ZP_17494982.1| ribosome-binding factor A [Bacillus cereus HuA2-4]
gi|423528328|ref|ZP_17504773.1| ribosome-binding factor A [Bacillus cereus HuB1-1]
gi|423561783|ref|ZP_17538059.1| ribosome-binding factor A [Bacillus cereus MSX-A1]
gi|423582021|ref|ZP_17558132.1| ribosome-binding factor A [Bacillus cereus VD014]
gi|423585780|ref|ZP_17561867.1| ribosome-binding factor A [Bacillus cereus VD045]
gi|423592193|ref|ZP_17568224.1| ribosome-binding factor A [Bacillus cereus VD048]
gi|423598878|ref|ZP_17574878.1| ribosome-binding factor A [Bacillus cereus VD078]
gi|423628904|ref|ZP_17604653.1| ribosome-binding factor A [Bacillus cereus VD154]
gi|423635418|ref|ZP_17611071.1| ribosome-binding factor A [Bacillus cereus VD156]
gi|423641108|ref|ZP_17616726.1| ribosome-binding factor A [Bacillus cereus VD166]
gi|423649674|ref|ZP_17625244.1| ribosome-binding factor A [Bacillus cereus VD169]
gi|423656670|ref|ZP_17631969.1| ribosome-binding factor A [Bacillus cereus VD200]
gi|423661350|ref|ZP_17636519.1| ribosome-binding factor A [Bacillus cereus VDM022]
gi|423669385|ref|ZP_17644414.1| ribosome-binding factor A [Bacillus cereus VDM034]
gi|423674436|ref|ZP_17649375.1| ribosome-binding factor A [Bacillus cereus VDM062]
gi|434376914|ref|YP_006611558.1| ribosome-binding factor A [Bacillus thuringiensis HD-789]
gi|449090752|ref|YP_007423193.1| ribosome-binding factor A [Bacillus thuringiensis serovar kurstaki
str. HD73]
gi|452200248|ref|YP_007480329.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|33301481|sp|Q819Y8.1|RBFA_BACCR RecName: Full=Ribosome-binding factor A
gi|226723592|sp|A9VT48.1|RBFA_BACWK RecName: Full=Ribosome-binding factor A
gi|226736636|sp|B7IUG9.1|RBFA_BACC2 RecName: Full=Ribosome-binding factor A
gi|226736637|sp|B7HDT4.1|RBFA_BACC4 RecName: Full=Ribosome-binding factor A
gi|29897456|gb|AAP10732.1| Ribosome-binding factor A [Bacillus cereus ATCC 14579]
gi|163863745|gb|ABY44804.1| ribosome-binding factor A [Bacillus weihenstephanensis KBAB4]
gi|206732419|gb|EDZ49600.1| ribosome-binding factor A [Bacillus cereus AH1134]
gi|218163736|gb|ACK63728.1| ribosome-binding factor A [Bacillus cereus B4264]
gi|218545696|gb|ACK98090.1| ribosome-binding factor A [Bacillus cereus G9842]
gi|228591531|gb|EEK49380.1| Ribosome-binding factor A [Bacillus cereus ATCC 10876]
gi|228603296|gb|EEK60773.1| Ribosome-binding factor A [Bacillus cereus 172560W]
gi|228614956|gb|EEK72058.1| Ribosome-binding factor A [Bacillus cereus AH621]
gi|228631359|gb|EEK87993.1| Ribosome-binding factor A [Bacillus cereus m1550]
gi|228637015|gb|EEK93474.1| Ribosome-binding factor A [Bacillus cereus BDRD-ST24]
gi|228648879|gb|EEL04904.1| Ribosome-binding factor A [Bacillus cereus BDRD-ST196]
gi|228654324|gb|EEL10189.1| Ribosome-binding factor A [Bacillus cereus BDRD-Cer4]
gi|228672058|gb|EEL27349.1| Ribosome-binding factor A [Bacillus cereus Rock1-15]
gi|228702110|gb|EEL54586.1| Ribosome-binding factor A [Bacillus cereus Rock4-2]
gi|228711763|gb|EEL63715.1| Ribosome-binding factor A [Bacillus cereus F65185]
gi|228717837|gb|EEL69485.1| Ribosome-binding factor A [Bacillus cereus AH603]
gi|228723744|gb|EEL75099.1| Ribosome-binding factor A [Bacillus cereus AH676]
gi|228748248|gb|EEL98108.1| Ribosome-binding factor A [Bacillus mycoides DSM 2048]
gi|228779237|gb|EEM27494.1| Ribosome-binding factor A [Bacillus thuringiensis Bt407]
gi|228785853|gb|EEM33856.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228792855|gb|EEM40413.1| Ribosome-binding factor A [Bacillus thuringiensis serovar sotto
str. T04001]
gi|228799543|gb|EEM46496.1| Ribosome-binding factor A [Bacillus thuringiensis serovar pakistani
str. T13001]
gi|228805653|gb|EEM52243.1| Ribosome-binding factor A [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|228818735|gb|EEM64801.1| Ribosome-binding factor A [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228836994|gb|EEM82335.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228849924|gb|EEM94755.1| Ribosome-binding factor A [Bacillus thuringiensis IBL 200]
gi|228857283|gb|EEN01786.1| Ribosome-binding factor A [Bacillus thuringiensis IBL 4222]
gi|296325358|gb|ADH08286.1| ribosome-binding factor A [Bacillus thuringiensis BMB171]
gi|326941577|gb|AEA17473.1| ribosome-binding factor A [Bacillus thuringiensis serovar chinensis
CT-43]
gi|363625410|gb|EHL76451.1| ribosome-binding factor A [Bacillus sp. 7_6_55CFAA_CT2]
gi|401082715|gb|EJP90980.1| ribosome-binding factor A [Bacillus cereus VD142]
gi|401085025|gb|EJP93271.1| ribosome-binding factor A [Bacillus cereus VD022]
gi|401104452|gb|EJQ12429.1| ribosome-binding factor A [Bacillus cereus BAG3O-2]
gi|401110694|gb|EJQ18593.1| ribosome-binding factor A [Bacillus cereus BAG3X2-2]
gi|401116587|gb|EJQ24425.1| ribosome-binding factor A [Bacillus cereus BAG4O-1]
gi|401120421|gb|EJQ28217.1| ribosome-binding factor A [Bacillus cereus BAG4X12-1]
gi|401139447|gb|EJQ47009.1| ribosome-binding factor A [Bacillus cereus BAG5X1-1]
gi|401140952|gb|EJQ48507.1| ribosome-binding factor A [Bacillus cereus BAG6X1-2]
gi|401150804|gb|EJQ58256.1| ribosome-binding factor A [Bacillus cereus CER057]
gi|401160546|gb|EJQ67924.1| ribosome-binding factor A [Bacillus cereus CER074]
gi|401160709|gb|EJQ68084.1| ribosome-binding factor A [Bacillus cereus HuA2-4]
gi|401202040|gb|EJR08905.1| ribosome-binding factor A [Bacillus cereus MSX-A1]
gi|401212900|gb|EJR19641.1| ribosome-binding factor A [Bacillus cereus VD014]
gi|401232326|gb|EJR38828.1| ribosome-binding factor A [Bacillus cereus VD048]
gi|401233126|gb|EJR39622.1| ribosome-binding factor A [Bacillus cereus VD045]
gi|401237148|gb|EJR43605.1| ribosome-binding factor A [Bacillus cereus VD078]
gi|401268449|gb|EJR74497.1| ribosome-binding factor A [Bacillus cereus VD154]
gi|401278169|gb|EJR84105.1| ribosome-binding factor A [Bacillus cereus VD156]
gi|401280169|gb|EJR86091.1| ribosome-binding factor A [Bacillus cereus VD166]
gi|401282954|gb|EJR88851.1| ribosome-binding factor A [Bacillus cereus VD169]
gi|401290411|gb|EJR96105.1| ribosome-binding factor A [Bacillus cereus VD200]
gi|401298512|gb|EJS04112.1| ribosome-binding factor A [Bacillus cereus VDM034]
gi|401301391|gb|EJS06980.1| ribosome-binding factor A [Bacillus cereus VDM022]
gi|401309987|gb|EJS15320.1| ribosome-binding factor A [Bacillus cereus VDM062]
gi|401635370|gb|EJS53125.1| ribosome-binding factor A [Bacillus cereus BAG1X1-2]
gi|401787515|gb|AFQ13554.1| ribosome-binding factor A [Bacillus thuringiensis HD-771]
gi|401875471|gb|AFQ27638.1| ribosome-binding factor A [Bacillus thuringiensis HD-789]
gi|402432234|gb|EJV64293.1| ribosome-binding factor A [Bacillus cereus BtB2-4]
gi|402437277|gb|EJV69301.1| ribosome-binding factor A [Bacillus cereus BAG6O-2]
gi|402450106|gb|EJV81940.1| ribosome-binding factor A [Bacillus cereus HuA2-1]
gi|402451991|gb|EJV83810.1| ribosome-binding factor A [Bacillus cereus HuB1-1]
gi|402458866|gb|EJV90606.1| ribosome-binding factor A [Bacillus cereus HD73]
gi|409175313|gb|AFV19618.1| ribosome-binding factor A [Bacillus thuringiensis Bt407]
gi|449024509|gb|AGE79672.1| ribosome-binding factor A [Bacillus thuringiensis serovar kurstaki
str. HD73]
gi|452105641|gb|AGG02581.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 118
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 69/124 (55%), Gaps = 20/124 (16%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R V +Q+++EL D++ + D + F T++DV+VS DLQ+
Sbjct: 4 RANRVGEQMKKELGDIISRKIKDPRIGFV-----------------TVTDVQVSGDLQIA 46
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
KVY+SV GD+ KE + GL ++RS++G+R++LR TPEI F DES G R+ +
Sbjct: 47 KVYISVLGDEEQKENTLKGLAKAKGFIRSEIGQRIRLRKTPEITFEFDESIGYGHRIDTL 106
Query: 186 LDRI 189
L I
Sbjct: 107 LHEI 110
>gi|331002479|ref|ZP_08325997.1| ribosome-binding factor A [Lachnospiraceae oral taxon 107 str.
F0167]
gi|330410295|gb|EGG89729.1| ribosome-binding factor A [Lachnospiraceae oral taxon 107 str.
F0167]
Length = 123
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 58/86 (67%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLR 163
D ++ +T+++D EV+ DL+ +YVSV GDD + +AGLKS + ++R +L RR+ LR
Sbjct: 29 DPRVAPMTSVTDAEVTTDLKYATIYVSVLGDDEQSKKTLAGLKSSSGFIRKELARRLNLR 88
Query: 164 LTPEIRFIEDESFERGSRVIAILDRI 189
TPE++F+ DES G ++ ++D +
Sbjct: 89 NTPELKFVLDESLAYGMKMDKLIDEV 114
>gi|238916827|ref|YP_002930344.1| ribosome-binding factor A [Eubacterium eligens ATCC 27750]
gi|259551983|sp|C4Z5N8.1|RBFA_EUBE2 RecName: Full=Ribosome-binding factor A
gi|238872187|gb|ACR71897.1| ribosome-binding factor A [Eubacterium eligens ATCC 27750]
Length = 130
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 56/86 (65%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLR 163
D ++ +T++ VEV+ DL+ K Y+SV GD++ ++ I GLKS Y+R QL R + LR
Sbjct: 29 DPRINPMTSVVAVEVAPDLKTCKAYISVLGDEKSQKDTITGLKSAEGYIRRQLARTVNLR 88
Query: 164 LTPEIRFIEDESFERGSRVIAILDRI 189
TPEIRFI D+S E G + ++D +
Sbjct: 89 NTPEIRFILDQSIEYGINMSKLIDEV 114
>gi|225572732|ref|ZP_03781487.1| hypothetical protein RUMHYD_00921 [Blautia hydrogenotrophica DSM
10507]
gi|225039905|gb|EEG50151.1| ribosome-binding factor A [Blautia hydrogenotrophica DSM 10507]
Length = 126
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Query: 110 LTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIR 169
+T++ VEV+ DL+ K Y+SV G+ +E + GLKS YVR QL R + LR TPEIR
Sbjct: 35 MTSVMAVEVAPDLKTCKAYISVLGNQEAQEETMVGLKSAESYVRRQLARNLNLRNTPEIR 94
Query: 170 FIEDESFERGSRVIAILDRIKAEKEAAKSKNKE 202
F+ D+S E G + ++D + A+K+A+ ++ +E
Sbjct: 95 FLLDQSIEYGVHMSKLIDEV-AKKDASGTEIEE 126
>gi|338813333|ref|ZP_08625462.1| ribosome-binding factor A [Acetonema longum DSM 6540]
gi|337274692|gb|EGO63200.1| ribosome-binding factor A [Acetonema longum DSM 6540]
Length = 122
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 79/130 (60%), Gaps = 15/130 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R++ V + I++E+S+M+LT+ L + +G T++ VE + DL KV+
Sbjct: 5 RIEKVQEFIKQEISNMILTE-------LKDPRIG-------FVTVTRVEATGDLHQAKVF 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VSV G D K ++ GL+S Y+R+++G+R++LR+TPE+ F DE+ + ++ +LD+
Sbjct: 51 VSVMGSDESKAQSLKGLQSALGYLRTEIGKRIQLRITPELSFHLDETLDHSVKIQKLLDQ 110
Query: 189 IKAEKEAAKS 198
IK + EA +
Sbjct: 111 IK-QNEAGNA 119
>gi|374708730|ref|ZP_09713164.1| ribosome-binding factor A [Sporolactobacillus inulinus CASD]
Length = 115
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 75/126 (59%), Gaps = 15/126 (11%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MAN R VA+Q+++E+SD++ + + +G T++ V+V+ DLQ
Sbjct: 1 MANLR-THRVAEQMKKEMSDIIGNR-------IKDPRVG-------FVTVTGVDVTGDLQ 45
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
VY+SV GDD K+ ++ GL +VRS++G+R++LR TPEI F DES E GS +
Sbjct: 46 EATVYISVLGDDDKKQSSLEGLNKAKGFVRSEIGKRIRLRKTPEISFKVDESVEYGSHID 105
Query: 184 AILDRI 189
+++++
Sbjct: 106 QLINKL 111
>gi|386714378|ref|YP_006180701.1| ribosome-binding factor A [Halobacillus halophilus DSM 2266]
gi|384073934|emb|CCG45427.1| ribosome-binding factor A [Halobacillus halophilus DSM 2266]
Length = 116
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 72/121 (59%), Gaps = 14/121 (11%)
Query: 66 NPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
N R V +Q+++ELSD++ + + +G T+++V+V+ DLQ
Sbjct: 2 NDLRANRVGEQMKKELSDIIGKK-------IKDPRVG-------FVTVTEVKVTGDLQQA 47
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
K+++SV GD++ K + GL ++RS++G+R++LR TPEI F DE+ ERG+R+ I
Sbjct: 48 KIFISVLGDEKQKHDTLVGLAKAKGFIRSEIGQRIRLRKTPEIMFEFDEAIERGNRIETI 107
Query: 186 L 186
L
Sbjct: 108 L 108
>gi|42782899|ref|NP_980146.1| ribosome-binding factor A [Bacillus cereus ATCC 10987]
gi|222097255|ref|YP_002531312.1| ribosome-binding factor a [Bacillus cereus Q1]
gi|229019005|ref|ZP_04175847.1| Ribosome-binding factor A [Bacillus cereus AH1273]
gi|229025250|ref|ZP_04181672.1| Ribosome-binding factor A [Bacillus cereus AH1272]
gi|229162747|ref|ZP_04290704.1| Ribosome-binding factor A [Bacillus cereus R309803]
gi|229197921|ref|ZP_04324637.1| Ribosome-binding factor A [Bacillus cereus m1293]
gi|402556068|ref|YP_006597339.1| ribosome-binding factor A [Bacillus cereus FRI-35]
gi|423389882|ref|ZP_17367108.1| ribosome-binding factor A [Bacillus cereus BAG1X1-3]
gi|423418282|ref|ZP_17395371.1| ribosome-binding factor A [Bacillus cereus BAG3X2-1]
gi|423574583|ref|ZP_17550702.1| ribosome-binding factor A [Bacillus cereus MSX-D12]
gi|423604562|ref|ZP_17580455.1| ribosome-binding factor A [Bacillus cereus VD102]
gi|61215104|sp|Q732R1.1|RBFA_BACC1 RecName: Full=Ribosome-binding factor A
gi|254789733|sp|B9IV99.1|RBFA_BACCQ RecName: Full=Ribosome-binding factor A
gi|42738826|gb|AAS42754.1| ribosome-binding factor A [Bacillus cereus ATCC 10987]
gi|221241313|gb|ACM14023.1| ribosome-binding factor A [Bacillus cereus Q1]
gi|228585639|gb|EEK43741.1| Ribosome-binding factor A [Bacillus cereus m1293]
gi|228620629|gb|EEK77498.1| Ribosome-binding factor A [Bacillus cereus R309803]
gi|228736078|gb|EEL86651.1| Ribosome-binding factor A [Bacillus cereus AH1272]
gi|228742333|gb|EEL92491.1| Ribosome-binding factor A [Bacillus cereus AH1273]
gi|401106555|gb|EJQ14516.1| ribosome-binding factor A [Bacillus cereus BAG3X2-1]
gi|401212108|gb|EJR18854.1| ribosome-binding factor A [Bacillus cereus MSX-D12]
gi|401245182|gb|EJR51540.1| ribosome-binding factor A [Bacillus cereus VD102]
gi|401641973|gb|EJS59690.1| ribosome-binding factor A [Bacillus cereus BAG1X1-3]
gi|401797278|gb|AFQ11137.1| ribosome-binding factor A [Bacillus cereus FRI-35]
Length = 118
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 69/127 (54%), Gaps = 20/127 (15%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R V +Q+++EL D++ + D + F T++DV+VS DLQ+
Sbjct: 4 RANRVGEQMKKELGDIISRKIKDPRVGFV-----------------TVTDVQVSGDLQIA 46
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
VY+SV GD+ KE + GL ++RS++G+R++LR TPEI F DES G R+ +
Sbjct: 47 TVYISVLGDEEQKESTLKGLAKAKGFIRSEIGQRIRLRKTPEISFEFDESIGYGHRIDTL 106
Query: 186 LDRIKAE 192
L I E
Sbjct: 107 LHEINKE 113
>gi|392957562|ref|ZP_10323085.1| ribosome-binding factor A [Bacillus macauensis ZFHKF-1]
gi|391876525|gb|EIT85122.1| ribosome-binding factor A [Bacillus macauensis ZFHKF-1]
Length = 121
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 72/126 (57%), Gaps = 20/126 (15%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R + +Q+++EL D++ L D + F T++ VEV+ DLQ
Sbjct: 5 RSNRIGEQMKKELGDIIGRKLKDPRIGFV-----------------TVTGVEVTGDLQQA 47
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
VY+SVFG+D KE + GL + ++R+++G+R++LR TPEI F DES GS++ ++
Sbjct: 48 TVYISVFGNDDQKEQTLRGLAKASGFIRTEIGKRIRLRKTPEISFKFDESIAYGSKIESL 107
Query: 186 LDRIKA 191
L +KA
Sbjct: 108 LTDLKA 113
>gi|167635838|ref|ZP_02394147.1| ribosome-binding factor A [Bacillus anthracis str. A0442]
gi|170687860|ref|ZP_02879074.1| ribosome-binding factor A [Bacillus anthracis str. A0465]
gi|218904938|ref|YP_002452772.1| ribosome-binding factor A [Bacillus cereus AH820]
gi|228916448|ref|ZP_04080014.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228928859|ref|ZP_04091891.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228935125|ref|ZP_04097952.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228947530|ref|ZP_04109820.1| Ribosome-binding factor A [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|229123324|ref|ZP_04252528.1| Ribosome-binding factor A [Bacillus cereus 95/8201]
gi|254683482|ref|ZP_05147342.1| ribosome-binding factor A [Bacillus anthracis str. CNEVA-9066]
gi|254722003|ref|ZP_05183792.1| ribosome-binding factor A [Bacillus anthracis str. A1055]
gi|254739625|ref|ZP_05197319.1| ribosome-binding factor A [Bacillus anthracis str. Kruger B]
gi|421639565|ref|ZP_16080156.1| ribosome-binding factor A [Bacillus anthracis str. BF1]
gi|226736635|sp|B7JJ88.1|RBFA_BACC0 RecName: Full=Ribosome-binding factor A
gi|167528795|gb|EDR91553.1| ribosome-binding factor A [Bacillus anthracis str. A0442]
gi|170668176|gb|EDT18925.1| ribosome-binding factor A [Bacillus anthracis str. A0465]
gi|218535717|gb|ACK88115.1| ribosome-binding factor A [Bacillus cereus AH820]
gi|228660100|gb|EEL15736.1| Ribosome-binding factor A [Bacillus cereus 95/8201]
gi|228812050|gb|EEM58381.1| Ribosome-binding factor A [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|228824490|gb|EEM70295.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228830666|gb|EEM76271.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228843027|gb|EEM88109.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|403393230|gb|EJY90475.1| ribosome-binding factor A [Bacillus anthracis str. BF1]
Length = 118
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 69/124 (55%), Gaps = 14/124 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R V +Q+++EL D +++ K+ V T++DV+VS DLQ+ VY
Sbjct: 4 RANRVGEQMKKELGD-IISRKIKDPRV-------------GFVTVTDVQVSGDLQIATVY 49
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+SV GD+ KE + GL ++RS++G+R++LR TPEI F DES G R+ +L
Sbjct: 50 ISVLGDEEQKENTLKGLAKAKGFIRSEIGQRIRLRKTPEISFEFDESIGYGHRIDTLLHE 109
Query: 189 IKAE 192
I E
Sbjct: 110 INKE 113
>gi|229086363|ref|ZP_04218540.1| Ribosome-binding factor A [Bacillus cereus Rock3-44]
gi|228696975|gb|EEL49783.1| Ribosome-binding factor A [Bacillus cereus Rock3-44]
Length = 118
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 69/124 (55%), Gaps = 20/124 (16%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R V +Q+++EL D++ + D + F T++DV+VS DLQ+
Sbjct: 4 RANRVGEQMKKELGDIISRKIKDPRIGFV-----------------TVTDVQVSGDLQIA 46
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
KVY+SV GD+ KE + GL ++R+++G+R++LR TPEI F DES G R+ +
Sbjct: 47 KVYISVLGDEEQKENTLKGLAKAKGFIRAEIGQRIRLRKTPEITFEFDESIAYGHRIDTL 106
Query: 186 LDRI 189
L I
Sbjct: 107 LHEI 110
>gi|350552891|ref|ZP_08922082.1| Ribosome-binding factor A [Thiorhodospira sibirica ATCC 700588]
gi|349792709|gb|EGZ46560.1| Ribosome-binding factor A [Thiorhodospira sibirica ATCC 700588]
Length = 135
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 83/155 (53%), Gaps = 27/155 (17%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R V QIQREL+++L + + + +G + T++ VEVS D KVY
Sbjct: 7 RTDRVGDQIQRELAELLRHE-------VNDPGIG-------MITLAGVEVSRDFAYAKVY 52
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
SV GDD + + A L+ + ++R +LGRR++LR P++RF+ D++ RG+++ A++D+
Sbjct: 53 FSVLGDDTQIKASQAALQRASSFLRRELGRRIRLRTIPQLRFVYDDTQLRGAKISALIDQ 112
Query: 189 IKAEKEAAKSKNKEQFESPDLPEDERDWEGDDPDE 223
AE A +PD P D G+ P E
Sbjct: 113 AIAEDRAK--------HTPDDPPD-----GETPSE 134
>gi|403234757|ref|ZP_10913343.1| ribosome-binding factor A [Bacillus sp. 10403023]
Length = 121
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 78/133 (58%), Gaps = 22/133 (16%)
Query: 73 VAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYV 129
V +Q+++ELSD++ + D + F T++DV+V+ DLQ KV++
Sbjct: 8 VGEQMKKELSDIIGRKIKDPRIGFV-----------------TVTDVQVTGDLQQAKVFI 50
Query: 130 SVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRI 189
SV GD+ ++ + GL ++RS++G+R++LR TPEI F DES + G+R+ +IL I
Sbjct: 51 SVLGDEEQRQNTLKGLAKAKGFIRSEIGQRIRLRKTPEILFEFDESIDYGNRIESILHEI 110
Query: 190 KAEKEAAKSKNKE 202
K++ + N+E
Sbjct: 111 N--KDSNQETNRE 121
>gi|282881986|ref|ZP_06290627.1| ribosome-binding factor A [Peptoniphilus lacrimalis 315-B]
gi|300813721|ref|ZP_07094041.1| ribosome-binding factor A [Peptoniphilus sp. oral taxon 836 str.
F0141]
gi|281298016|gb|EFA90471.1| ribosome-binding factor A [Peptoniphilus lacrimalis 315-B]
gi|300512178|gb|EFK39358.1| ribosome-binding factor A [Peptoniphilus sp. oral taxon 836 str.
F0141]
Length = 118
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 76/122 (62%), Gaps = 13/122 (10%)
Query: 68 RRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKV 127
+R+ ++++++R L D ++ +K+ D + +LT+IS VEV+ DL KV
Sbjct: 4 KRINKISEEVKRCLMD-IVQNKI------------KDPRIPTLTSISHVEVTRDLSFAKV 50
Query: 128 YVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
YVS+F DD K+ A+ GL+S +++ +L R +KLR+ PE+ FI D+S E+G ++ +++
Sbjct: 51 YVSIFADDIKKQKALQGLESAKGFIKKELAREVKLRVMPELIFINDDSIEKGLKMDKLIN 110
Query: 188 RI 189
+
Sbjct: 111 EV 112
>gi|228998587|ref|ZP_04158174.1| Ribosome-binding factor A [Bacillus mycoides Rock3-17]
gi|229006087|ref|ZP_04163775.1| Ribosome-binding factor A [Bacillus mycoides Rock1-4]
gi|228755163|gb|EEM04520.1| Ribosome-binding factor A [Bacillus mycoides Rock1-4]
gi|228761055|gb|EEM10014.1| Ribosome-binding factor A [Bacillus mycoides Rock3-17]
Length = 111
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 54/81 (66%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEI 168
T++DV+VS DLQ+ KVY+SV GD++ KE + GL ++R+++G+R++LR TPEI
Sbjct: 23 GFVTVTDVQVSGDLQIAKVYISVLGDEQQKENTLKGLAKAKGFIRAEIGQRIRLRKTPEI 82
Query: 169 RFIEDESFERGSRVIAILDRI 189
F DES G R+ +L I
Sbjct: 83 TFEFDESIAYGHRIDTLLHEI 103
>gi|373469564|ref|ZP_09560746.1| ribosome-binding factor A [Lachnospiraceae bacterium oral taxon 082
str. F0431]
gi|371764258|gb|EHO52679.1| ribosome-binding factor A [Lachnospiraceae bacterium oral taxon 082
str. F0431]
Length = 123
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 59/93 (63%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLR 163
D ++ +T+++D EV+ DL+ +YVSV GDD + + GLKS + ++R +L RR+ LR
Sbjct: 29 DPRVAPMTSVTDAEVTTDLKYATIYVSVLGDDEQSKKTLLGLKSSSGFIRKELARRLNLR 88
Query: 164 LTPEIRFIEDESFERGSRVIAILDRIKAEKEAA 196
TPE+RF+ DES G ++ ++D + + E
Sbjct: 89 NTPELRFVLDESLAYGMKMDKLIDEVIKKDETG 121
>gi|160880904|ref|YP_001559872.1| ribosome-binding factor A [Clostridium phytofermentans ISDg]
gi|189039535|sp|A9KNW3.1|RBFA_CLOPH RecName: Full=Ribosome-binding factor A
gi|160429570|gb|ABX43133.1| ribosome-binding factor A [Clostridium phytofermentans ISDg]
Length = 136
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 73/119 (61%), Gaps = 13/119 (10%)
Query: 73 VAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVF 132
+ +++Q+ELS ML++ ++ D ++ +T+I VEV+ DL+ KVY+SV
Sbjct: 11 INQEVQKELS-MLISREL------------KDPRINPMTSIVAVEVAPDLKTAKVYISVL 57
Query: 133 GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRIKA 191
GD+ ++ +AGLKS A ++R QL R + LR TPE+ F+ D+S E G + +++ + A
Sbjct: 58 GDELSQKNTLAGLKSAAPFLRGQLARGINLRNTPELLFVVDQSIEYGVSMSKLINEVNA 116
>gi|228992539|ref|ZP_04152466.1| Ribosome-binding factor A [Bacillus pseudomycoides DSM 12442]
gi|228767173|gb|EEM15809.1| Ribosome-binding factor A [Bacillus pseudomycoides DSM 12442]
Length = 117
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 54/81 (66%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEI 168
T++DV+VS DLQ+ KVY+SV GD++ KE + GL ++R+++G+R++LR TPEI
Sbjct: 30 GFVTVTDVQVSGDLQIAKVYISVLGDEQQKENTLKGLAKAKGFIRAEIGQRIRLRKTPEI 89
Query: 169 RFIEDESFERGSRVIAILDRI 189
F DES G R+ +L I
Sbjct: 90 TFEFDESIAYGHRIDTLLHEI 110
>gi|336113858|ref|YP_004568625.1| ribosome-binding factor A [Bacillus coagulans 2-6]
gi|335367288|gb|AEH53239.1| ribosome-binding factor A [Bacillus coagulans 2-6]
Length = 115
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 73/124 (58%), Gaps = 20/124 (16%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R V +Q+++ELSD++ L D + F T++DVEV+ DLQ
Sbjct: 4 RANRVGEQMKKELSDIIGRKLKDPRVGFV-----------------TVTDVEVTGDLQQA 46
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
KVY++V GD+ K+ + GL+ ++RS++G+R++LR TPE+ F DES E G+R+ +
Sbjct: 47 KVYLTVLGDEEQKKDTLDGLEKAKGFIRSEVGKRIRLRKTPELIFEIDESIEYGNRIETL 106
Query: 186 LDRI 189
+ +I
Sbjct: 107 IKKI 110
>gi|152976177|ref|YP_001375694.1| ribosome-binding factor A [Bacillus cytotoxicus NVH 391-98]
gi|189039526|sp|A7GRE1.1|RBFA_BACCN RecName: Full=Ribosome-binding factor A
gi|152024929|gb|ABS22699.1| ribosome-binding factor A [Bacillus cytotoxicus NVH 391-98]
Length = 118
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 69/124 (55%), Gaps = 14/124 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R V +Q+++EL D +++ K+ V T++DV+VS DLQ+ VY
Sbjct: 4 RANRVGEQMKKELGD-IISRKIKDPRV-------------GFVTVTDVKVSGDLQIATVY 49
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+SV GD+ KE + GL ++RS++G+R++LR TPEI F DES G R+ +L
Sbjct: 50 ISVLGDEEQKENTLKGLAKAKGFIRSEIGQRIRLRKTPEISFEFDESIGYGHRIDTLLHE 109
Query: 189 IKAE 192
I E
Sbjct: 110 INKE 113
>gi|399923796|ref|ZP_10781154.1| ribosome-binding factor A [Peptoniphilus rhinitidis 1-13]
Length = 117
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 74/124 (59%), Gaps = 13/124 (10%)
Query: 66 NPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
N +R+ ++++++R +SD++ + D + S+T+IS VEV+ DL
Sbjct: 2 NSKRINRISEEVKRTISDIVQNEL-------------KDPRIPSITSISHVEVTNDLSYA 48
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
KVYVSV G+D ++ AI GL S +++ +L +++KLR PE+ FI+D+S E+ + +
Sbjct: 49 KVYVSVLGNDFDRDEAIEGLNSAKGFIKKELSKKIKLRAMPELIFIKDDSIEKALELDKL 108
Query: 186 LDRI 189
+D +
Sbjct: 109 IDEV 112
>gi|47569088|ref|ZP_00239777.1| ribosome-binding factor A [Bacillus cereus G9241]
gi|228986954|ref|ZP_04147080.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229157387|ref|ZP_04285465.1| Ribosome-binding factor A [Bacillus cereus ATCC 4342]
gi|229174477|ref|ZP_04302009.1| Ribosome-binding factor A [Bacillus cereus MM3]
gi|384181621|ref|YP_005567383.1| ribosome-binding factor A [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|423401347|ref|ZP_17378520.1| ribosome-binding factor A [Bacillus cereus BAG2X1-2]
gi|423458006|ref|ZP_17434803.1| ribosome-binding factor A [Bacillus cereus BAG5X2-1]
gi|423477949|ref|ZP_17454664.1| ribosome-binding factor A [Bacillus cereus BAG6X1-1]
gi|47554250|gb|EAL12612.1| ribosome-binding factor A [Bacillus cereus G9241]
gi|228609037|gb|EEK66327.1| Ribosome-binding factor A [Bacillus cereus MM3]
gi|228626114|gb|EEK82863.1| Ribosome-binding factor A [Bacillus cereus ATCC 4342]
gi|228772732|gb|EEM21172.1| Ribosome-binding factor A [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|324327705|gb|ADY22965.1| ribosome-binding factor A [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|401148390|gb|EJQ55883.1| ribosome-binding factor A [Bacillus cereus BAG5X2-1]
gi|401654337|gb|EJS71880.1| ribosome-binding factor A [Bacillus cereus BAG2X1-2]
gi|402428111|gb|EJV60208.1| ribosome-binding factor A [Bacillus cereus BAG6X1-1]
Length = 118
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 69/124 (55%), Gaps = 20/124 (16%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R V +Q+++EL D++ + D + F T++DV+VS DLQ+
Sbjct: 4 RANRVGEQMKKELGDIISRKIKDPRVGFV-----------------TVTDVQVSGDLQIA 46
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
VY+SV GD+ KE + GL ++RS++G+R++LR TPEI F DES G R+ +
Sbjct: 47 TVYISVLGDEEQKESTLKGLAKAKGFIRSEIGQRIRLRKTPEISFEFDESIGYGHRIDTL 106
Query: 186 LDRI 189
L +I
Sbjct: 107 LHQI 110
>gi|229031441|ref|ZP_04187441.1| Ribosome-binding factor A [Bacillus cereus AH1271]
gi|228729730|gb|EEL80710.1| Ribosome-binding factor A [Bacillus cereus AH1271]
Length = 118
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 69/124 (55%), Gaps = 20/124 (16%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R V +Q+++EL D++ + D + F T++DV+VS DLQ+
Sbjct: 4 RANRVGEQMKKELGDIISRKIKDPRVGFV-----------------TVTDVQVSGDLQIA 46
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
VY+SV GD+ KE + GL ++RS++G+R++LR TPEI F DES G R+ +
Sbjct: 47 TVYISVLGDEEQKESTLKGLAKAKGFIRSEIGQRIRLRKTPEISFEFDESIGYGHRIDTL 106
Query: 186 LDRI 189
L +I
Sbjct: 107 LHQI 110
>gi|373106274|ref|ZP_09520577.1| ribosome-binding factor A [Stomatobaculum longum]
gi|371652649|gb|EHO18057.1| ribosome-binding factor A [Stomatobaculum longum]
Length = 125
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 61/92 (66%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLR 163
D +S++TT++D V+ADL+ VYVSV G ++ +AGLKS A ++RS+L + LR
Sbjct: 29 DPRISAMTTVTDARVTADLRYCTVYVSVLGSEQEAADTLAGLKSAAGFIRSELAHSVNLR 88
Query: 164 LTPEIRFIEDESFERGSRVIAILDRIKAEKEA 195
+TPE++F+ DES G+ + +L+ + ++A
Sbjct: 89 ITPELKFVLDESMAYGAHIDKVLEDLHLSEQA 120
>gi|240146072|ref|ZP_04744673.1| ribosome-binding factor A [Roseburia intestinalis L1-82]
gi|257201817|gb|EEV00102.1| ribosome-binding factor A [Roseburia intestinalis L1-82]
gi|291536071|emb|CBL09183.1| ribosome-binding factor A [Roseburia intestinalis M50/1]
gi|291538568|emb|CBL11679.1| ribosome-binding factor A [Roseburia intestinalis XB6B4]
Length = 126
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 74/127 (58%), Gaps = 17/127 (13%)
Query: 73 VAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVF 132
+ ++QRELS+++ + D ++ LT++ VEV+ DL+ K Y+SV
Sbjct: 11 INGEVQRELSNIIRGEI-------------KDPRINPLTSVVAVEVAPDLKTCKAYISVL 57
Query: 133 GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR---- 188
GD+ + +AGLKS ++RS+L + + LR TPEIRF+ D+S E G ++ ++D
Sbjct: 58 GDEESQAKTLAGLKSAEGFIRSKLAKTVNLRNTPEIRFVLDQSIEYGVKMSKMIDEVTKD 117
Query: 189 IKAEKEA 195
IK+E +A
Sbjct: 118 IKSEDDA 124
>gi|423395890|ref|ZP_17373091.1| ribosome-binding factor A [Bacillus cereus BAG2X1-1]
gi|423406766|ref|ZP_17383915.1| ribosome-binding factor A [Bacillus cereus BAG2X1-3]
gi|401653632|gb|EJS71176.1| ribosome-binding factor A [Bacillus cereus BAG2X1-1]
gi|401660056|gb|EJS77539.1| ribosome-binding factor A [Bacillus cereus BAG2X1-3]
Length = 118
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 68/124 (54%), Gaps = 20/124 (16%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R V +Q+++EL D++ + D + F T++DV+VS DLQ+
Sbjct: 4 RANRVGEQMKKELGDIISRKIKDPRIGFV-----------------TVTDVQVSGDLQIA 46
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
VY+SV GD+ KE + GL ++RS++G+R++LR TPEI F DES G R+ +
Sbjct: 47 TVYISVLGDEEQKESTLKGLAKAKGFIRSEIGQRIRLRKTPEISFEFDESIGYGHRIDTL 106
Query: 186 LDRI 189
L I
Sbjct: 107 LHEI 110
>gi|49478390|ref|YP_037872.1| ribosome-binding factor A [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|52141678|ref|YP_085152.1| ribosome-binding factor A [Bacillus cereus E33L]
gi|118479031|ref|YP_896182.1| ribosome-binding factor A [Bacillus thuringiensis str. Al Hakam]
gi|196042166|ref|ZP_03109449.1| ribosome-binding factor A [Bacillus cereus NVH0597-99]
gi|196044539|ref|ZP_03111774.1| ribosome-binding factor A [Bacillus cereus 03BB108]
gi|225865790|ref|YP_002751168.1| ribosome-binding factor A [Bacillus cereus 03BB102]
gi|229092851|ref|ZP_04223985.1| Ribosome-binding factor A [Bacillus cereus Rock3-42]
gi|229186048|ref|ZP_04313218.1| Ribosome-binding factor A [Bacillus cereus BGSC 6E1]
gi|301055301|ref|YP_003793512.1| ribosome-binding factor A [Bacillus cereus biovar anthracis str.
CI]
gi|376267705|ref|YP_005120417.1| Ribosome-binding factor A [Bacillus cereus F837/76]
gi|423550440|ref|ZP_17526767.1| ribosome-binding factor A [Bacillus cereus ISP3191]
gi|61214843|sp|Q636L5.1|RBFA_BACCZ RecName: Full=Ribosome-binding factor A
gi|61215017|sp|Q6HF04.1|RBFA_BACHK RecName: Full=Ribosome-binding factor A
gi|166218421|sp|A0RHI2.1|RBFA_BACAH RecName: Full=Ribosome-binding factor A
gi|254789732|sp|C1EP33.1|RBFA_BACC3 RecName: Full=Ribosome-binding factor A
gi|49329946|gb|AAT60592.1| ribosome-binding factor A [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|51975147|gb|AAU16697.1| ribosome-binding factor A [Bacillus cereus E33L]
gi|118418256|gb|ABK86675.1| ribosome-binding factor A [Bacillus thuringiensis str. Al Hakam]
gi|196024574|gb|EDX63246.1| ribosome-binding factor A [Bacillus cereus 03BB108]
gi|196027018|gb|EDX65642.1| ribosome-binding factor A [Bacillus cereus NVH0597-99]
gi|225790371|gb|ACO30588.1| ribosome-binding factor A [Bacillus cereus 03BB102]
gi|228597467|gb|EEK55117.1| Ribosome-binding factor A [Bacillus cereus BGSC 6E1]
gi|228690473|gb|EEL44256.1| Ribosome-binding factor A [Bacillus cereus Rock3-42]
gi|300377470|gb|ADK06374.1| ribosome-binding factor A [Bacillus cereus biovar anthracis str.
CI]
gi|364513505|gb|AEW56904.1| Ribosome-binding factor A [Bacillus cereus F837/76]
gi|401190056|gb|EJQ97106.1| ribosome-binding factor A [Bacillus cereus ISP3191]
Length = 118
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 69/121 (57%), Gaps = 14/121 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R V +Q+++EL D +++ K+ V T++DV+VS DLQ+ VY
Sbjct: 4 RANRVGEQMKKELGD-IISRKIKDPRV-------------GFVTVTDVQVSGDLQIATVY 49
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+SV GD+ KE + GL ++RS++G+R++LR TPEI F DES G R+ +L +
Sbjct: 50 ISVLGDEEQKENTLKGLAKAKGFIRSEIGQRIRLRKTPEISFEFDESIGYGHRIDTLLHQ 109
Query: 189 I 189
I
Sbjct: 110 I 110
>gi|433463502|ref|ZP_20421055.1| ribosome-binding factor A [Halobacillus sp. BAB-2008]
gi|432187502|gb|ELK44787.1| ribosome-binding factor A [Halobacillus sp. BAB-2008]
Length = 116
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 72/121 (59%), Gaps = 14/121 (11%)
Query: 66 NPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
N R V +Q+++E+SD +++ K+ V T+++V+V+ DLQ
Sbjct: 2 NDLRASRVGEQMKKEMSD-IISKKIKDPRV-------------GFVTVTEVKVTGDLQQA 47
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
KVY+SV GD++ + + GL ++RS++G+R++LR TPEI F DE+ ERG+R+ +
Sbjct: 48 KVYISVLGDEKQRHDTLVGLAKAKGFIRSEIGQRIRLRKTPEIMFEFDEAIERGNRIETL 107
Query: 186 L 186
L
Sbjct: 108 L 108
>gi|56963991|ref|YP_175722.1| ribosome-binding factor A [Bacillus clausii KSM-K16]
gi|61214762|sp|Q5WFU4.1|RBFA_BACSK RecName: Full=Ribosome-binding factor A
gi|56910234|dbj|BAD64761.1| ribosome-binding factor A [Bacillus clausii KSM-K16]
Length = 118
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 79/123 (64%), Gaps = 15/123 (12%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MAN R V+ V +Q+++ELSD+L+ D + + + R++ T++ V+V+ DLQ
Sbjct: 1 MANNRAVR-VGEQMKKELSDILIRD-------IKDPRV---RFV----TVTGVDVTGDLQ 45
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
+++V GD+ ++ +AGL+ ++R++LG+R++LR TPE+ F DES + G+R+
Sbjct: 46 QATAFITVLGDEEERKATLAGLEKAKGFIRTELGKRIRLRKTPELSFSFDESIQYGNRIE 105
Query: 184 AIL 186
++L
Sbjct: 106 SLL 108
>gi|315652144|ref|ZP_07905142.1| ribosome-binding factor A [Lachnoanaerobaculum saburreum DSM 3986]
gi|315485636|gb|EFU76020.1| ribosome-binding factor A [Lachnoanaerobaculum saburreum DSM 3986]
Length = 123
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 59/93 (63%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLR 163
D ++ +T+++D EV+ DL+ +YVSV GDD + + GLKS A ++R +L RR+ LR
Sbjct: 29 DPRVAPVTSVTDAEVTTDLKYATIYVSVLGDDEQSKKTLLGLKSSAGFIRKELARRLNLR 88
Query: 164 LTPEIRFIEDESFERGSRVIAILDRIKAEKEAA 196
TPE++F+ DES G ++ ++D + + E
Sbjct: 89 NTPELKFVLDESLAYGMKMDKLIDEVIKKDETG 121
>gi|126698909|ref|YP_001087806.1| ribosome-binding factor A [Clostridium difficile 630]
gi|255100330|ref|ZP_05329307.1| ribosome-binding factor A [Clostridium difficile QCD-63q42]
gi|255306268|ref|ZP_05350440.1| ribosome-binding factor A [Clostridium difficile ATCC 43255]
gi|423082299|ref|ZP_17070891.1| ribosome-binding factor A [Clostridium difficile 002-P50-2011]
gi|423087691|ref|ZP_17076077.1| ribosome-binding factor A [Clostridium difficile 050-P50-2011]
gi|423090900|ref|ZP_17079186.1| ribosome-binding factor A [Clostridium difficile 70-100-2010]
gi|123174598|sp|Q18BH6.1|RBFA_CLOD6 RecName: Full=Ribosome-binding factor A
gi|115250346|emb|CAJ68168.1| Ribosome-binding factor A [Clostridium difficile 630]
gi|357544005|gb|EHJ26011.1| ribosome-binding factor A [Clostridium difficile 050-P50-2011]
gi|357548625|gb|EHJ30485.1| ribosome-binding factor A [Clostridium difficile 002-P50-2011]
gi|357556015|gb|EHJ37637.1| ribosome-binding factor A [Clostridium difficile 70-100-2010]
Length = 126
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 81/148 (54%), Gaps = 22/148 (14%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA+ R + +A++I++ +S ML+ D ++S+ +++DVEV+ DL+
Sbjct: 1 MASYNRTRRIAEEIRKVVSTMLINGV-------------KDPRITSMVSVTDVEVTNDLR 47
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
VYVS+ G D +E + GLKS Y+R ++G+ +KLR PEI F D+S E+G +
Sbjct: 48 YAYVYVSILGGD--EESTLTGLKSAGGYIRREVGKNIKLRYIPEIVFKLDDSIEKGMYMD 105
Query: 184 AILDRIKAEKEAAKSKNKEQFESPDLPE 211
+++ R+ KN +Q E + E
Sbjct: 106 SLIKRV-------NEKNAQQNEDENYDE 126
>gi|269103406|ref|ZP_06156103.1| ribosome-binding factor A [Photobacterium damselae subsp. damselae
CIP 102761]
gi|268163304|gb|EEZ41800.1| ribosome-binding factor A [Photobacterium damselae subsp. damselae
CIP 102761]
Length = 133
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 75/122 (61%), Gaps = 15/122 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + VA+Q+Q+EL AV+ + L R ++TTIS VEVS D+ KVY
Sbjct: 7 RTQRVAQQLQKEL------------AVILQRELKEPRL--AMTTISSVEVSRDMGYAKVY 52
Query: 129 VSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
V+ F D+ +E ++A L+ KA Y+RS LG++++LR+TPE+ FI D+S G R+ ++
Sbjct: 53 VTFFAIGDQSEEESLAILREKAPYIRSLLGKQIRLRVTPELTFIFDQSLTEGMRISNLVS 112
Query: 188 RI 189
++
Sbjct: 113 KV 114
>gi|419717997|ref|ZP_14245339.1| ribosome-binding factor A [Lachnoanaerobaculum saburreum F0468]
gi|383305860|gb|EIC97203.1| ribosome-binding factor A [Lachnoanaerobaculum saburreum F0468]
Length = 118
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 59/93 (63%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLR 163
D ++ +T+++D EV+ DL+ +YVSV GDD + + GLKS A ++R +L RR+ LR
Sbjct: 24 DPRVAPVTSVTDAEVTTDLKYATIYVSVLGDDEQSKKTLLGLKSSAGFIRKELARRLNLR 83
Query: 164 LTPEIRFIEDESFERGSRVIAILDRIKAEKEAA 196
TPE++F+ DES G ++ ++D + + E
Sbjct: 84 NTPELKFVLDESLAYGMKMDKLIDEVIKKDETG 116
>gi|421872749|ref|ZP_16304366.1| ribosome-binding factor A [Brevibacillus laterosporus GI-9]
gi|372458164|emb|CCF13915.1| ribosome-binding factor A [Brevibacillus laterosporus GI-9]
Length = 118
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 76/124 (61%), Gaps = 14/124 (11%)
Query: 66 NPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
N R+ V+++I++ELS +L + + + +G T++DVEV++DLQ
Sbjct: 2 NKTRMSRVSEEIKKELSILLQRE-------MKDPRIG-------FVTVTDVEVTSDLQQA 47
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
KVY+SVFGD+ +E ++ GL+ ++R+++GRR+KLR PE+ F D S + G+++ +
Sbjct: 48 KVYISVFGDESKREESLKGLQKAKGFLRTEVGRRIKLRHVPELLFKLDASIDYGNKIDNL 107
Query: 186 LDRI 189
L I
Sbjct: 108 LREI 111
>gi|313894756|ref|ZP_07828316.1| ribosome-binding factor A [Selenomonas sp. oral taxon 137 str.
F0430]
gi|312976437|gb|EFR41892.1| ribosome-binding factor A [Selenomonas sp. oral taxon 137 str.
F0430]
Length = 124
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 72/128 (56%), Gaps = 14/128 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
RV+ V + +++E+SD++L D L + +G T++ V + DL+ K+Y
Sbjct: 5 RVEKVQELMKQEISDIILHD-------LKDPRIG-------FVTVTSVACTEDLREAKIY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VSV GD++G + ++AGL YVR ++GRR++LR TPEI F D S + IL+
Sbjct: 51 VSVMGDEKGVQESLAGLNRALGYVRREIGRRIRLRFTPEISFALDTSLNYSDHIQRILNT 110
Query: 189 IKAEKEAA 196
+ EK A
Sbjct: 111 LHEEKPAG 118
>gi|427407225|ref|ZP_18897430.1| ribosome-binding factor A [Selenomonas sp. F0473]
gi|425707700|gb|EKU70744.1| ribosome-binding factor A [Selenomonas sp. F0473]
Length = 124
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 72/127 (56%), Gaps = 14/127 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
RV+ V + +++E+SD++L D L + +G T++ V + DL+ K+Y
Sbjct: 5 RVEKVRELMKQEISDIILHD-------LKDPRIG-------FVTVTSVSCTEDLREAKIY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VSV GD++ +AGL +VR ++GRR++LR TPEI F D S E R+ ILD
Sbjct: 51 VSVMGDEQSVRDTLAGLGHALGFVRREIGRRIRLRFTPEISFALDTSLEYSDRIRRILDT 110
Query: 189 IKAEKEA 195
I EK+A
Sbjct: 111 IHDEKDA 117
>gi|30263814|ref|NP_846191.1| ribosome-binding factor A [Bacillus anthracis str. Ames]
gi|47529238|ref|YP_020587.1| ribosome-binding factor A [Bacillus anthracis str. 'Ames Ancestor']
gi|49186661|ref|YP_029913.1| ribosome-binding factor A [Bacillus anthracis str. Sterne]
gi|65321138|ref|ZP_00394097.1| COG0858: Ribosome-binding factor A [Bacillus anthracis str. A2012]
gi|165872633|ref|ZP_02217264.1| ribosome-binding factor A [Bacillus anthracis str. A0488]
gi|167639837|ref|ZP_02398106.1| ribosome-binding factor A [Bacillus anthracis str. A0193]
gi|170706868|ref|ZP_02897326.1| ribosome-binding factor A [Bacillus anthracis str. A0389]
gi|177652087|ref|ZP_02934633.1| ribosome-binding factor A [Bacillus anthracis str. A0174]
gi|190568437|ref|ZP_03021344.1| ribosome-binding factor A [Bacillus anthracis str. Tsiankovskii-I]
gi|227813281|ref|YP_002813290.1| ribosome-binding factor A [Bacillus anthracis str. CDC 684]
gi|229600478|ref|YP_002868049.1| ribosome-binding factor A [Bacillus anthracis str. A0248]
gi|254735849|ref|ZP_05193555.1| ribosome-binding factor A [Bacillus anthracis str. Western North
America USA6153]
gi|254756002|ref|ZP_05208033.1| ribosome-binding factor A [Bacillus anthracis str. Vollum]
gi|254759337|ref|ZP_05211362.1| ribosome-binding factor A [Bacillus anthracis str. Australia 94]
gi|386737633|ref|YP_006210814.1| Ribosome-binding factor A [Bacillus anthracis str. H9401]
gi|421507351|ref|ZP_15954271.1| ribosome-binding factor A [Bacillus anthracis str. UR-1]
gi|33301489|sp|Q81WM5.1|RBFA_BACAN RecName: Full=Ribosome-binding factor A
gi|254789730|sp|C3P5L3.1|RBFA_BACAA RecName: Full=Ribosome-binding factor A
gi|254789731|sp|C3L7B6.1|RBFA_BACAC RecName: Full=Ribosome-binding factor A
gi|30258458|gb|AAP27677.1| ribosome-binding factor A [Bacillus anthracis str. Ames]
gi|47504386|gb|AAT33062.1| ribosome-binding factor A [Bacillus anthracis str. 'Ames Ancestor']
gi|49180588|gb|AAT55964.1| ribosome-binding factor A [Bacillus anthracis str. Sterne]
gi|164711665|gb|EDR17211.1| ribosome-binding factor A [Bacillus anthracis str. A0488]
gi|167512238|gb|EDR87615.1| ribosome-binding factor A [Bacillus anthracis str. A0193]
gi|170128286|gb|EDS97155.1| ribosome-binding factor A [Bacillus anthracis str. A0389]
gi|172082456|gb|EDT67521.1| ribosome-binding factor A [Bacillus anthracis str. A0174]
gi|190560441|gb|EDV14419.1| ribosome-binding factor A [Bacillus anthracis str. Tsiankovskii-I]
gi|227007093|gb|ACP16836.1| ribosome-binding factor A [Bacillus anthracis str. CDC 684]
gi|229264886|gb|ACQ46523.1| ribosome-binding factor A [Bacillus anthracis str. A0248]
gi|384387485|gb|AFH85146.1| Ribosome-binding factor A [Bacillus anthracis str. H9401]
gi|401822485|gb|EJT21635.1| ribosome-binding factor A [Bacillus anthracis str. UR-1]
Length = 118
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 69/124 (55%), Gaps = 14/124 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R V +Q+++EL D +++ K+ V T++DV+VS DLQ+ VY
Sbjct: 4 RANRVGEQMKKELGD-IISRKIKDPRV-------------GFVTVTDVQVSRDLQIATVY 49
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+SV GD+ KE + GL ++RS++G+R++LR TPEI F DES G R+ +L
Sbjct: 50 ISVLGDEEQKENTLKGLAKAKGFIRSEIGQRIRLRKTPEISFEFDESIGYGHRIDTLLHE 109
Query: 189 IKAE 192
I E
Sbjct: 110 INKE 113
>gi|239826659|ref|YP_002949283.1| ribosome-binding factor A [Geobacillus sp. WCH70]
gi|259552007|sp|C5D9D1.1|RBFA_GEOSW RecName: Full=Ribosome-binding factor A
gi|239806952|gb|ACS24017.1| ribosome-binding factor A [Geobacillus sp. WCH70]
Length = 126
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 72/124 (58%), Gaps = 20/124 (16%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R V +Q+++ELSD++ L D + F T++DV V+ DLQ
Sbjct: 4 RATRVGEQMKKELSDIIGRKLKDPRIGFV-----------------TVTDVRVTGDLQQA 46
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
KVY+SV GD+ ++ + GL+ ++RS++G+R++LR TPEI F DES E G+R+ +
Sbjct: 47 KVYISVLGDEEQRQNTLKGLEKAKGFIRSEIGQRIRLRKTPEIFFEIDESIEYGNRIEQL 106
Query: 186 LDRI 189
+ +I
Sbjct: 107 IRQI 110
>gi|345019846|ref|ZP_08783459.1| ribosome-binding factor A [Ornithinibacillus scapharcae TW25]
Length = 114
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 67/118 (56%), Gaps = 14/118 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R VA+Q+++EL + +LT K+ V T++DVEV+ DLQ VY
Sbjct: 5 RANRVAEQMKKELGE-ILTRKIKDPRV-------------GFVTVTDVEVTGDLQQATVY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
+SV GD+ K + GL ++RS++G R++LR TPEI F DE+ E G+R+ IL
Sbjct: 51 ISVLGDEAKKRDTLLGLAKAKGFIRSEIGNRIRLRKTPEINFEFDEALEYGNRIETIL 108
>gi|416353515|ref|ZP_11681535.1| ribosome-binding factor A [Clostridium botulinum C str. Stockholm]
gi|338195549|gb|EGO87815.1| ribosome-binding factor A [Clostridium botulinum C str. Stockholm]
Length = 121
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 73/126 (57%), Gaps = 13/126 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R+ + +++++E+S+++ D D L+++ +++ VEV+ DL+ KV+
Sbjct: 5 RLGRINEEVRKEISNIIRDDI-------------HDPRLTAMVSVTRVEVTNDLRYAKVF 51
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+S+FG D KE + LKS A ++R ++G R+KLR TPEI DES E G + +L
Sbjct: 52 ISIFGSDNSKEETLEALKSSAGFIRREVGHRVKLRYTPEIVLELDESIEHGMHINDLLSN 111
Query: 189 IKAEKE 194
+K K+
Sbjct: 112 LKGNKK 117
>gi|347750453|ref|YP_004858018.1| ribosome-binding factor A [Bacillus coagulans 36D1]
gi|347582971|gb|AEO99237.1| ribosome-binding factor A [Bacillus coagulans 36D1]
Length = 115
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 73/124 (58%), Gaps = 20/124 (16%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R V +Q+++ELSD++ L D + F T++DVEV+ DLQ
Sbjct: 4 RANRVGEQMKKELSDIIGRKLKDPRVGFV-----------------TVTDVEVTGDLQQA 46
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
KVY++V GD+ K+ + GL+ ++RS++G+R++LR TPE+ F DES E G+R+ +
Sbjct: 47 KVYLTVLGDEVQKKDTLDGLEKAKGFIRSEVGKRIRLRKTPELIFEIDESIEYGNRIETL 106
Query: 186 LDRI 189
+ +I
Sbjct: 107 IKKI 110
>gi|206978440|ref|ZP_03239307.1| ribosome-binding factor A [Bacillus cereus H3081.97]
gi|217961231|ref|YP_002339799.1| ribosome-binding factor A [Bacillus cereus AH187]
gi|229140452|ref|ZP_04269007.1| Ribosome-binding factor A [Bacillus cereus BDRD-ST26]
gi|375285733|ref|YP_005106172.1| ribosome-binding factor A [Bacillus cereus NC7401]
gi|423353513|ref|ZP_17331140.1| ribosome-binding factor A [Bacillus cereus IS075]
gi|423374392|ref|ZP_17351730.1| ribosome-binding factor A [Bacillus cereus AND1407]
gi|423567294|ref|ZP_17543541.1| ribosome-binding factor A [Bacillus cereus MSX-A12]
gi|226736638|sp|B7HLE4.1|RBFA_BACC7 RecName: Full=Ribosome-binding factor A
gi|206743355|gb|EDZ54795.1| ribosome-binding factor A [Bacillus cereus H3081.97]
gi|217067043|gb|ACJ81293.1| ribosome-binding factor A [Bacillus cereus AH187]
gi|228643013|gb|EEK99289.1| Ribosome-binding factor A [Bacillus cereus BDRD-ST26]
gi|358354260|dbj|BAL19432.1| ribosome-binding factor A [Bacillus cereus NC7401]
gi|401089326|gb|EJP97497.1| ribosome-binding factor A [Bacillus cereus IS075]
gi|401094304|gb|EJQ02386.1| ribosome-binding factor A [Bacillus cereus AND1407]
gi|401214382|gb|EJR21112.1| ribosome-binding factor A [Bacillus cereus MSX-A12]
Length = 118
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 69/127 (54%), Gaps = 20/127 (15%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R V +Q+++EL D++ + D + F T++DV+VS DLQ+
Sbjct: 4 RANRVGEQMKKELGDIISRKIKDPRVGFV-----------------TVTDVQVSGDLQIA 46
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
VY+SV GD+ K+ + GL ++RS++G+R++LR TPEI F DES G R+ +
Sbjct: 47 TVYISVLGDEEQKDSTLKGLAKAKGFIRSEIGQRIRLRKTPEISFEFDESIGYGHRIDTL 106
Query: 186 LDRIKAE 192
L I E
Sbjct: 107 LHEINKE 113
>gi|410456930|ref|ZP_11310777.1| ribosome-binding factor A [Bacillus bataviensis LMG 21833]
gi|409926904|gb|EKN64055.1| ribosome-binding factor A [Bacillus bataviensis LMG 21833]
Length = 123
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 77/138 (55%), Gaps = 21/138 (15%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R V +Q+++ELSD++ + D + F T++DV+V+ DLQ
Sbjct: 4 RANRVGEQMKKELSDIIGRKIKDPRIGFV-----------------TVTDVQVTGDLQQA 46
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
KV++SV GDD KE + GL ++R+++G R++LR TPEI F DES G+ + +
Sbjct: 47 KVFISVLGDDEQKENTLKGLAKAKGFIRTEIGHRIRLRKTPEIIFEWDESINYGNHIETL 106
Query: 186 LDRIKAEKEAAKSKNKEQ 203
L ++ + + + KN+E+
Sbjct: 107 LHQLHTDDKPLE-KNEEE 123
>gi|374296760|ref|YP_005046951.1| ribosome-binding factor A [Clostridium clariflavum DSM 19732]
gi|359826254|gb|AEV69027.1| ribosome-binding factor A [Clostridium clariflavum DSM 19732]
Length = 115
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 73/119 (61%), Gaps = 13/119 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R ++++++RE+S ++ + D LSSL ++++V V+ DL+ KVY
Sbjct: 3 RTARISEEMKREISSIIQNEL-------------KDPRLSSLISVTNVNVTKDLRYAKVY 49
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
VS+ G++ K+ ++ GLKS A ++R ++G R++LR TPE++F D S E G+ + ++D
Sbjct: 50 VSIMGNEEEKKNSLEGLKSAAGFIRREVGHRIQLRYTPEVQFELDNSIEHGAYISKLID 108
>gi|297584083|ref|YP_003699863.1| ribosome-binding factor A [Bacillus selenitireducens MLS10]
gi|297142540|gb|ADH99297.1| ribosome-binding factor A [Bacillus selenitireducens MLS10]
Length = 115
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 74/125 (59%), Gaps = 14/125 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R V +QI++EL+D ++Q + + +G T++ V+V+ DLQ +
Sbjct: 5 RANRVGEQIKKELTD------IIQRGI-KDPRIG-------FVTVTAVDVTGDLQQATAF 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
V+V+GDD +E ++ L+ Y+RS++G+R+KLR TPE+ F DES ERG+R+ +L
Sbjct: 51 VTVYGDDDEREKSLLALEKANGYIRSEIGKRIKLRKTPELDFKFDESIERGNRIDELLRN 110
Query: 189 IKAEK 193
+ E+
Sbjct: 111 LNKEE 115
>gi|417002265|ref|ZP_11941654.1| ribosome-binding factor A [Anaerococcus prevotii ACS-065-V-Col13]
gi|325479406|gb|EGC82502.1| ribosome-binding factor A [Anaerococcus prevotii ACS-065-V-Col13]
Length = 128
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 73/138 (52%), Gaps = 11/138 (7%)
Query: 66 NPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
N RR + ++ ++++ELS +L D L + L + ++ +I+DVEV+ DL
Sbjct: 2 NKRRTERISSEVKKELSKILRDD-------LNDPRLS----MEAMVSITDVEVTNDLSYA 50
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
YVSV GD KE + L Y++ +G RM+LR PE RF DES ERG+ + +
Sbjct: 51 DCYVSVLGDSHNKEDVLEALDQAKGYIKILIGERMRLRSMPEFRFKLDESIERGAYMDKL 110
Query: 186 LDRIKAEKEAAKSKNKEQ 203
++ A+ + A K Q
Sbjct: 111 IEETIAKDKKANEDRKNQ 128
>gi|402311816|ref|ZP_10830747.1| ribosome-binding factor A [Lachnospiraceae bacterium ICM7]
gi|404482880|ref|ZP_11018105.1| ribosome-binding factor A [Clostridiales bacterium OBRC5-5]
gi|400370963|gb|EJP23942.1| ribosome-binding factor A [Lachnospiraceae bacterium ICM7]
gi|404343970|gb|EJZ70329.1| ribosome-binding factor A [Clostridiales bacterium OBRC5-5]
Length = 123
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 57/86 (66%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLR 163
D ++ +T+++D EV+ DL+ +YVSV GDD + + GLKS + ++R +L RR+ LR
Sbjct: 29 DPRVAPMTSVTDAEVTTDLKYATIYVSVLGDDEQSKKTLQGLKSSSGFIRKELARRLNLR 88
Query: 164 LTPEIRFIEDESFERGSRVIAILDRI 189
TPE++F+ DES G ++ ++D +
Sbjct: 89 NTPELKFVLDESLAYGMKMDKLIDEV 114
>gi|339009426|ref|ZP_08641998.1| ribosome-binding factor A [Brevibacillus laterosporus LMG 15441]
gi|338773904|gb|EGP33435.1| ribosome-binding factor A [Brevibacillus laterosporus LMG 15441]
Length = 120
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 76/124 (61%), Gaps = 14/124 (11%)
Query: 66 NPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
N R+ V+++I++ELS +L + + + +G T++DVEV++DLQ
Sbjct: 4 NKTRMSRVSEEIKKELSILLQRE-------MKDPRIG-------FVTVTDVEVTSDLQQA 49
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
KVY+SVFGD+ +E ++ GL+ ++R+++GRR+KLR PE+ F D S + G+++ +
Sbjct: 50 KVYISVFGDESKREESLKGLQKARGFLRTEVGRRIKLRHVPELLFKLDASIDYGNKIDNL 109
Query: 186 LDRI 189
L I
Sbjct: 110 LREI 113
>gi|291546822|emb|CBL19930.1| ribosome-binding factor A [Ruminococcus sp. SR1/5]
Length = 122
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 49/70 (70%)
Query: 110 LTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIR 169
+T+++ VEV+ DL+ K Y+SV G+ + K+ + GLK+ YVR +L RR+ LR TPEIR
Sbjct: 35 MTSVTAVEVAPDLKTCKAYISVLGEKQAKDSTLRGLKNAEGYVRRELARRLNLRNTPEIR 94
Query: 170 FIEDESFERG 179
F+ DES E G
Sbjct: 95 FVLDESIEYG 104
>gi|373857334|ref|ZP_09600076.1| ribosome-binding factor A [Bacillus sp. 1NLA3E]
gi|372452984|gb|EHP26453.1| ribosome-binding factor A [Bacillus sp. 1NLA3E]
Length = 122
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 55/81 (67%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEI 168
T++DVEVS DLQ KV++SV GD++ +E + GL ++R+++G+R++LR TPEI
Sbjct: 30 GFVTVTDVEVSGDLQQAKVFISVLGDEKQRENTLKGLAKAKGFIRTEIGQRIRLRKTPEI 89
Query: 169 RFIEDESFERGSRVIAILDRI 189
F DES + G+R+ +L I
Sbjct: 90 IFEFDESIDYGNRIETLLHEI 110
>gi|251797396|ref|YP_003012127.1| ribosome-binding factor A [Paenibacillus sp. JDR-2]
gi|247545022|gb|ACT02041.1| ribosome-binding factor A [Paenibacillus sp. JDR-2]
Length = 118
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 69/121 (57%), Gaps = 14/121 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
RV V +QI++ELS ++ T+ L + +G T++ VE ++DL +VY
Sbjct: 5 RVGRVGEQIKKELSQIIQTE-------LKDPRIG-------FITVTGVEATSDLSQARVY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+SV G + KE + L Y+RS+LG+RM+LR TPE+ F D S E GSR+ +L+
Sbjct: 51 LSVLGSEEQKEETLKALGKANGYLRSELGKRMRLRHTPELLFKFDSSIEYGSRIEGLLEE 110
Query: 189 I 189
I
Sbjct: 111 I 111
>gi|154506280|ref|ZP_02043018.1| hypothetical protein RUMGNA_03822 [Ruminococcus gnavus ATCC 29149]
gi|153793419|gb|EDN75839.1| ribosome-binding factor A [Ruminococcus gnavus ATCC 29149]
Length = 123
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 63/107 (58%), Gaps = 13/107 (12%)
Query: 73 VAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVF 132
+ ++QRELS+ +L+ + D ++ +T++ VEV+ DL+ K Y+SV
Sbjct: 11 INTEVQRELSN------ILRGGI-------KDPRVAPMTSVVAVEVAPDLKTCKAYISVL 57
Query: 133 GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERG 179
GD + +E I GL+S Y+R +L R + +R TPEIRFI D+S E G
Sbjct: 58 GDKKAQEDTITGLQSAEGYIRRELARTINMRNTPEIRFIMDQSIEYG 104
>gi|254974857|ref|ZP_05271329.1| ribosome-binding factor A [Clostridium difficile QCD-66c26]
gi|255092244|ref|ZP_05321722.1| ribosome-binding factor A [Clostridium difficile CIP 107932]
gi|255313984|ref|ZP_05355567.1| ribosome-binding factor A [Clostridium difficile QCD-76w55]
gi|255516664|ref|ZP_05384340.1| ribosome-binding factor A [Clostridium difficile QCD-97b34]
gi|255649763|ref|ZP_05396665.1| ribosome-binding factor A [Clostridium difficile QCD-37x79]
gi|260682919|ref|YP_003214204.1| ribosome-binding factor A [Clostridium difficile CD196]
gi|260686517|ref|YP_003217650.1| ribosome-binding factor A [Clostridium difficile R20291]
gi|306519868|ref|ZP_07406215.1| ribosome-binding factor A [Clostridium difficile QCD-32g58]
gi|384360507|ref|YP_006198359.1| ribosome-binding factor A [Clostridium difficile BI1]
gi|260209082|emb|CBA62230.1| ribosome-binding factor A [Clostridium difficile CD196]
gi|260212533|emb|CBE03487.1| ribosome-binding factor A [Clostridium difficile R20291]
Length = 126
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 80/148 (54%), Gaps = 22/148 (14%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA+ R + +A++I++ +S ML+ D ++S+ +++DVEV+ DL+
Sbjct: 1 MASYNRTRRIAEEIRKVVSTMLINGV-------------KDPRITSMVSVTDVEVTNDLR 47
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
VYVS+ G D +E + GLKS Y+R ++G+ +KLR PEI F D+S E+G +
Sbjct: 48 YAYVYVSILGGD--EESTLTGLKSAGGYIRREVGKNIKLRYIPEIVFKLDDSIEKGMYMD 105
Query: 184 AILDRIKAEKEAAKSKNKEQFESPDLPE 211
++ R+ KN +Q E + E
Sbjct: 106 NLIKRV-------NEKNAQQNEDENYDE 126
>gi|209525403|ref|ZP_03273943.1| ribosome-binding factor A [Arthrospira maxima CS-328]
gi|209494083|gb|EDZ94398.1| ribosome-binding factor A [Arthrospira maxima CS-328]
Length = 105
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 116 VEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDES 175
++ DLQ K++VS++G + + + GL+S Y+RS LG+ ++LR TPE+ F+ED S
Sbjct: 9 LKCPGDLQHAKIFVSIYGTEEARRSTMEGLRSATGYIRSHLGKHIRLRRTPEVVFLEDRS 68
Query: 176 FERGSRVIAILDRIKAE-KEAAKSKNKEQFESPD 208
ERG ++I +L++I E K + + + Q + P+
Sbjct: 69 LERGDKIIELLNQISHEHKNSDTAGDTTQEDDPE 102
>gi|197303048|ref|ZP_03168096.1| hypothetical protein RUMLAC_01775 [Ruminococcus lactaris ATCC
29176]
gi|197297903|gb|EDY32455.1| ribosome-binding factor A [Ruminococcus lactaris ATCC 29176]
Length = 127
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 68/117 (58%), Gaps = 13/117 (11%)
Query: 73 VAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVF 132
V ++QRELS++L A + D ++ +T++ VEV+ DL+ K Y+SV
Sbjct: 11 VNAEVQRELSNIL------------RAGI-KDPRVAPMTSVVAVEVAPDLKTCKAYISVL 57
Query: 133 GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRI 189
GD++ ++ I GL+S Y+R +L R + +R TPEIRFI D+S E G + +D +
Sbjct: 58 GDEKAQQDTIRGLQSAEGYIRRELARTINMRNTPEIRFIVDQSIEYGVNISKKIDEV 114
>gi|363899688|ref|ZP_09326196.1| ribosome-binding factor A [Oribacterium sp. ACB1]
gi|395208291|ref|ZP_10397532.1| ribosome-binding factor A [Oribacterium sp. ACB8]
gi|361957986|gb|EHL11289.1| ribosome-binding factor A [Oribacterium sp. ACB1]
gi|394705872|gb|EJF13396.1| ribosome-binding factor A [Oribacterium sp. ACB8]
Length = 138
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 58/92 (63%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLR 163
D +S ++ V+++ DLQ KVYVS G + I GLK+ A ++R +L R + LR
Sbjct: 29 DIRVSPFCDVTGVDLTPDLQYCKVYVSCLGSEESLGKTIEGLKAAAGFLRRELARSLNLR 88
Query: 164 LTPEIRFIEDESFERGSRVIAILDRIKAEKEA 195
TPE++F+ D S E GSR+ A+++++K E EA
Sbjct: 89 HTPELQFVPDHSVEYGSRMDALINKVKEEDEA 120
>gi|407474011|ref|YP_006788411.1| ribosome-binding factor A [Clostridium acidurici 9a]
gi|407050519|gb|AFS78564.1| ribosome-binding factor A [Clostridium acidurici 9a]
Length = 120
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 59/93 (63%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLR 163
D +SS+T+I+ VEV+ DL+ +Y+SV GD++ I GL+S + Y+R ++G+ + LR
Sbjct: 27 DPRVSSMTSITKVEVTRDLRYANIYISVLGDEKSGTETIKGLQSASGYIRKEIGKNINLR 86
Query: 164 LTPEIRFIEDESFERGSRVIAILDRIKAEKEAA 196
TPE FI D S E G ++ IL +K + E +
Sbjct: 87 YTPEPLFILDNSIEYGIKISKILSDLKEDDEGS 119
>gi|336431861|ref|ZP_08611702.1| ribosome-binding factor A [Lachnospiraceae bacterium 2_1_58FAA]
gi|336019612|gb|EGN49335.1| ribosome-binding factor A [Lachnospiraceae bacterium 2_1_58FAA]
Length = 123
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 63/107 (58%), Gaps = 13/107 (12%)
Query: 73 VAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVF 132
+ ++QRELS+ +L+ + D ++ +T++ VEV+ DL+ K Y+SV
Sbjct: 11 INTEVQRELSN------ILRGGI-------KDPRVAPMTSVVAVEVAPDLKTCKAYISVL 57
Query: 133 GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERG 179
GD + +E I GL+S Y+R +L R + +R TPEIRFI D+S E G
Sbjct: 58 GDKKAQEDTIKGLQSAEGYIRRELARTINMRNTPEIRFIMDQSIEYG 104
>gi|160940468|ref|ZP_02087813.1| hypothetical protein CLOBOL_05358 [Clostridium bolteae ATCC
BAA-613]
gi|357056699|ref|ZP_09117736.1| ribosome-binding factor A [Clostridium clostridioforme 2_1_49FAA]
gi|158437048|gb|EDP14815.1| hypothetical protein CLOBOL_05358 [Clostridium bolteae ATCC
BAA-613]
gi|355379866|gb|EHG27016.1| ribosome-binding factor A [Clostridium clostridioforme 2_1_49FAA]
Length = 133
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 76/134 (56%), Gaps = 16/134 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R+ M ++QRELS+ +++ + D + +T++ VEV+ DL+ K Y
Sbjct: 10 RINM---EVQRELSE------IIRGGI-------KDPRIHPMTSVVSVEVTPDLKFCKAY 53
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+SV GD+ + I GLKS YVR +L RR+ LR TPE++FI D+S E G + ++D
Sbjct: 54 ISVLGDEEAGKSTIQGLKSAEGYVRRELARRVNLRNTPELKFILDQSIEYGVNMSRLIDE 113
Query: 189 IKAEKEAAKSKNKE 202
+ + +++++E
Sbjct: 114 VTKDLHQEETQDEE 127
>gi|332981615|ref|YP_004463056.1| ribosome-binding factor A [Mahella australiensis 50-1 BON]
gi|332699293|gb|AEE96234.1| ribosome-binding factor A [Mahella australiensis 50-1 BON]
Length = 122
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 72/125 (57%), Gaps = 13/125 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R+ ++++++RE+SD++ + D + +T+++ VE++ DL+ KVY
Sbjct: 5 RLARISEELKREISDIIRNEL-------------KDPRVPMMTSVTKVEITNDLKYAKVY 51
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VSV GD+ + A GL S A +VR ++G R++LR TP+I F+ D S E G+ + +L
Sbjct: 52 VSVLGDEDTVKNAFDGLNSAAGFVRKEVGSRIRLRYTPQIIFVRDTSIEYGAHISKLLHD 111
Query: 189 IKAEK 193
I K
Sbjct: 112 INTNK 116
>gi|255655323|ref|ZP_05400732.1| ribosome-binding factor A [Clostridium difficile QCD-23m63]
gi|296451308|ref|ZP_06893048.1| ribosome-binding factor A [Clostridium difficile NAP08]
gi|296880340|ref|ZP_06904303.1| ribosome-binding factor A [Clostridium difficile NAP07]
gi|296259914|gb|EFH06769.1| ribosome-binding factor A [Clostridium difficile NAP08]
gi|296428581|gb|EFH14465.1| ribosome-binding factor A [Clostridium difficile NAP07]
Length = 126
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 81/148 (54%), Gaps = 22/148 (14%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA+ R + ++++I++ +S ML+ D ++S+ +++DVEV+ DL+
Sbjct: 1 MASYNRTRRISEEIRKVVSTMLINGV-------------KDPRITSMVSVTDVEVTNDLR 47
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
VYVS+ G D +E + GLKS Y+R ++G+ +KLR PEI F D+S E+G +
Sbjct: 48 YAYVYVSILGGD--EESTLTGLKSAGGYIRREVGKNIKLRYIPEIVFKIDDSIEKGMYMD 105
Query: 184 AILDRIKAEKEAAKSKNKEQFESPDLPE 211
+++ R+ KN +Q E + E
Sbjct: 106 SLIKRV-------NEKNAQQNEDENYDE 126
>gi|225390152|ref|ZP_03759876.1| hypothetical protein CLOSTASPAR_03902 [Clostridium asparagiforme
DSM 15981]
gi|225043786|gb|EEG54032.1| hypothetical protein CLOSTASPAR_03902 [Clostridium asparagiforme
DSM 15981]
Length = 135
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 75/134 (55%), Gaps = 16/134 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R+ M ++QRELS+ +++ + D + +T++ VEV+ DL+ K Y
Sbjct: 10 RINM---EVQRELSE------IIRGGI-------KDPRIHPMTSVIAVEVTPDLKYCKAY 53
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+SV G++ + I GLKS YVR +L RR+ LR TP+I+FI D+S E G + ++D
Sbjct: 54 ISVLGNEDAGKATIEGLKSAEGYVRRELARRVNLRNTPQIKFILDQSIEYGVNMSHLIDE 113
Query: 189 IKAEKEAAKSKNKE 202
+ + A + ++ E
Sbjct: 114 VTKDLHAGEPESHE 127
>gi|325265384|ref|ZP_08132108.1| ribosome-binding factor A [Clostridium sp. D5]
gi|324029385|gb|EGB90676.1| ribosome-binding factor A [Clostridium sp. D5]
Length = 123
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 63/107 (58%), Gaps = 13/107 (12%)
Query: 73 VAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVF 132
+ ++QRELS+ +L+ + D ++ +T++ VEV+ DL+ K Y+SV
Sbjct: 11 INTEVQRELSN------ILRGGI-------KDPRVAPMTSVVAVEVAPDLKTCKAYISVL 57
Query: 133 GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERG 179
GD + +E I GL+S Y+R +L R + +R TPEIRFI D+S E G
Sbjct: 58 GDKKAQEDTIKGLQSAEGYIRRELARTINMRNTPEIRFIMDQSIEYG 104
>gi|357404298|ref|YP_004916222.1| ribosome-binding factor A [Methylomicrobium alcaliphilum 20Z]
gi|351716963|emb|CCE22628.1| Ribosome-binding factor A [Methylomicrobium alcaliphilum 20Z]
Length = 120
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 70/123 (56%), Gaps = 15/123 (12%)
Query: 73 VAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVF 132
V+ QIQ+EL A++ + L R T+++V +S DL V K+YV+V
Sbjct: 11 VSSQIQKEL------------ALILQRELDVKRV--GFVTVNEVVISKDLAVAKIYVTVL 56
Query: 133 -GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRIKA 191
DD+GK+ +I L ++RS+L +RM+LR PE+RF D+SFE G RV +L K
Sbjct: 57 NADDQGKKDSIKSLNDATPFIRSELCKRMRLRNIPELRFYYDDSFETGMRVAELLSESKD 116
Query: 192 EKE 194
+KE
Sbjct: 117 KKE 119
>gi|266622968|ref|ZP_06115903.1| ribosome-binding factor A [Clostridium hathewayi DSM 13479]
gi|288865261|gb|EFC97559.1| ribosome-binding factor A [Clostridium hathewayi DSM 13479]
Length = 120
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 65/114 (57%), Gaps = 13/114 (11%)
Query: 76 QIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVFGDD 135
++QRELS+ +++ + D + +TT+ V V+ DL+ K Y+S+ GD+
Sbjct: 14 EVQRELSE------IIRLEI-------KDPRIHPMTTVVAVSVTPDLKFCKAYISILGDE 60
Query: 136 RGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRI 189
+ I GLKS Y+R +L RR+ LR TPEI+FI D+S E G + ++D +
Sbjct: 61 EAGKATIEGLKSAEGYIRRELARRVNLRNTPEIKFILDQSIEYGVNMSKLIDEV 114
>gi|397905344|ref|ZP_10506201.1| Ribosome-binding factor A [Caloramator australicus RC3]
gi|397161617|emb|CCJ33535.1| Ribosome-binding factor A [Caloramator australicus RC3]
Length = 118
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 54/81 (66%)
Query: 110 LTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIR 169
LT+I+DVEV+ DL+ KVYVSVFG + K + GLK+ A ++R ++GR++K R TPEI
Sbjct: 33 LTSITDVEVTKDLRYAKVYVSVFGSEDEKLKCLEGLKNAAGFIRKEVGRKIKARYTPEIL 92
Query: 170 FIEDESFERGSRVIAILDRIK 190
F D S E G + +L +K
Sbjct: 93 FELDRSIEYGMHITKMLQEMK 113
>gi|326204067|ref|ZP_08193928.1| ribosome-binding factor A [Clostridium papyrosolvens DSM 2782]
gi|325985834|gb|EGD46669.1| ribosome-binding factor A [Clostridium papyrosolvens DSM 2782]
Length = 117
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 71/124 (57%), Gaps = 13/124 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R+ +++++++E+S+++ D D L S+ +I V+ DL+ KV+
Sbjct: 4 RIIRISEEVKKEISNIIQNDI-------------KDPRLPSMVSIVSCNVTKDLRYAKVF 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VSV G++ K+ AI+ LKS A ++R +LG R++LR TPEI F D S E G + +LD
Sbjct: 51 VSVLGNEEQKKNAISALKSAAGFIRRELGHRVQLRYTPEIHFELDTSIEHGIHINKLLDD 110
Query: 189 IKAE 192
K E
Sbjct: 111 AKKE 114
>gi|291519302|emb|CBK74523.1| ribosome-binding factor A [Butyrivibrio fibrisolvens 16/4]
Length = 124
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 54/88 (61%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLR 163
D +S +T++ VEV+ DL+ K Y+SV GDD I GLKS A ++R +L R+ LR
Sbjct: 29 DPRISPVTSVVSVEVAPDLKTCKAYISVLGDDEAVAKTIEGLKSSAGFIRRELAHRINLR 88
Query: 164 LTPEIRFIEDESFERGSRVIAILDRIKA 191
TPEI F+ D+S +++ ++D + A
Sbjct: 89 NTPEITFVSDQSIAYAAKMSKLIDEVNA 116
>gi|442804547|ref|YP_007372696.1| ribosome-binding factor A [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442740397|gb|AGC68086.1| ribosome-binding factor A [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 116
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 77/127 (60%), Gaps = 14/127 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R ++ +IQ+E+SD++ ++ +PE + +++ VEV+ DL+ KVY
Sbjct: 3 RTDRISVEIQKEVSDIIRNS--IKDPRIPE-----------MISVTRVEVTKDLRYAKVY 49
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+S++G + K+ A+ LK A +VR ++G+R++LR TPEI F ED S E+G + ++D
Sbjct: 50 ISIYGSEEEKKNAMTALKGAAGFVRREIGQRIQLRYTPEIVFKEDNSIEQGLYISKLIDE 109
Query: 189 IK-AEKE 194
I +EKE
Sbjct: 110 IMHSEKE 116
>gi|365845295|ref|ZP_09386078.1| ribosome-binding factor A [Flavonifractor plautii ATCC 29863]
gi|373116096|ref|ZP_09530254.1| ribosome-binding factor A [Lachnospiraceae bacterium 7_1_58FAA]
gi|364561188|gb|EHM39100.1| ribosome-binding factor A [Flavonifractor plautii ATCC 29863]
gi|371669723|gb|EHO34820.1| ribosome-binding factor A [Lachnospiraceae bacterium 7_1_58FAA]
Length = 129
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 70/118 (59%), Gaps = 15/118 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R+ + ++IQREL+ ++ T K D + L +++ V+ + DL+ K+Y
Sbjct: 5 RIGRINEEIQRELAALIRTVK--------------DPRVHGLVSVTAVDTTPDLRYAKIY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
VSV KEV + GLKS Y+R +LGR + LR TPE++F+ED+S + G+ ++++L
Sbjct: 51 VSVLDKSDVKEV-VKGLKSAGGYLRRELGRALSLRYTPELQFVEDDSIDTGAHILSML 107
>gi|91774424|ref|YP_544180.1| ribosome-binding factor A [Methylobacillus flagellatus KT]
gi|122399242|sp|Q1GXD5.1|RBFA_METFK RecName: Full=Ribosome-binding factor A
gi|91708411|gb|ABE48339.1| ribosome-binding factor A [Methylobacillus flagellatus KT]
Length = 125
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 68/119 (57%), Gaps = 16/119 (13%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R VA+QIQREL+D+L QF V D +SS+ T+++VEVS D+ KVY
Sbjct: 7 RSDRVAEQIQRELADLL------QFEV-------KDPRVSSMVTVTEVEVSGDMSHAKVY 53
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
+ +G GL+ A ++RSQL RR+ LR P++ F+ D S +RG R+ ++D
Sbjct: 54 ---YTAPQGTPELQKGLEKTAGFLRSQLARRLLLRTVPQLHFVYDASIDRGMRIAKLID 109
>gi|323692924|ref|ZP_08107146.1| ribosome-binding factor A [Clostridium symbiosum WAL-14673]
gi|355628167|ref|ZP_09049639.1| ribosome-binding factor A [Clostridium sp. 7_3_54FAA]
gi|323503007|gb|EGB18847.1| ribosome-binding factor A [Clostridium symbiosum WAL-14673]
gi|354819914|gb|EHF04348.1| ribosome-binding factor A [Clostridium sp. 7_3_54FAA]
Length = 139
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 53/82 (64%)
Query: 110 LTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIR 169
+TT+ VEV+ DL+ K Y+SV G + + + GLKS A ++R+QL +R+ LR TPE+
Sbjct: 35 MTTVVSVEVTPDLKFCKAYISVLGSEEAGKDTVQGLKSAASFIRTQLAKRINLRNTPELS 94
Query: 170 FIEDESFERGSRVIAILDRIKA 191
FI D+S E G + +++ + A
Sbjct: 95 FILDQSIEYGVNMTRLINEVTA 116
>gi|406978712|gb|EKE00620.1| hypothetical protein ACD_21C00308G0003 [uncultured bacterium]
Length = 121
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 72/131 (54%), Gaps = 15/131 (11%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
M N R K + +QIQ EL ++LL PE L S +T I+ V+VSADL
Sbjct: 1 MVNDNRKKRIGEQIQHELGNILLRH--------PEQPL-----FSQITLIA-VDVSADLS 46
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
V KV+ S+F D + +E + L+ A ++R L + LRLTP +RF D+S +RG R+
Sbjct: 47 VAKVFFSIFDDAKIEEAKMV-LEQAAGFLRKALAHNLNLRLTPRLRFAYDDSIKRGQRLS 105
Query: 184 AILDRIKAEKE 194
A++D A E
Sbjct: 106 ALIDSAVAADE 116
>gi|253682529|ref|ZP_04863326.1| ribosome-binding factor A [Clostridium botulinum D str. 1873]
gi|253562241|gb|EES91693.1| ribosome-binding factor A [Clostridium botulinum D str. 1873]
Length = 121
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 72/125 (57%), Gaps = 13/125 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R+ + +++++E+S+++ D D L+++ +++ VEV+ DL+ KV+
Sbjct: 5 RLGRINEEVRKEISNIIRDDI-------------HDPRLTAMVSVTRVEVTNDLRYAKVF 51
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+S+FG + KE + LKS A ++R ++G R+KLR TPEI DES E G + +L
Sbjct: 52 ISIFGSNNSKEETLEALKSSAGFIRREVGHRVKLRYTPEIVLELDESIEHGMHINDLLSN 111
Query: 189 IKAEK 193
+K K
Sbjct: 112 LKGNK 116
>gi|404329096|ref|ZP_10969544.1| ribosome-binding factor A [Sporolactobacillus vineae DSM 21990 =
SL153]
Length = 116
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 67/117 (57%), Gaps = 20/117 (17%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
RV VA+Q+++E+SD++ L D + F T++ V+V+ DLQ
Sbjct: 5 RVNRVAEQMKKEMSDIIEHRLKDPRVGFV-----------------TVTGVDVTGDLQDA 47
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
VY+SV GDD K + GL +VR+++G+R++LR TPEI+F D+S + GS +
Sbjct: 48 TVYISVLGDDEKKAATLEGLNKAKGFVRTEIGKRIRLRKTPEIQFKFDQSMDYGSHI 104
>gi|312127894|ref|YP_003992768.1| ribosome-binding factor a [Caldicellulosiruptor hydrothermalis 108]
gi|311777913|gb|ADQ07399.1| ribosome-binding factor A [Caldicellulosiruptor hydrothermalis 108]
Length = 132
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 71/123 (57%), Gaps = 13/123 (10%)
Query: 73 VAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVF 132
V+++I++ELSD++ D L R + L +I V +S DL+ KVYVS+F
Sbjct: 9 VSEEIKKELSDIIQHD------------LKDPRLCAELISIVKVNMSKDLRHAKVYVSIF 56
Query: 133 GDDRGK-EVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRIKA 191
D+ K E + L++ Y+R ++ RR+ LR TPEI F D+S E G+R+ IL+++
Sbjct: 57 DKDKEKVETTMKALENAKPYIRREISRRISLRFTPEITFELDDSIEYGARISQILNQLNI 116
Query: 192 EKE 194
KE
Sbjct: 117 SKE 119
>gi|153812991|ref|ZP_01965659.1| hypothetical protein RUMOBE_03398 [Ruminococcus obeum ATCC 29174]
gi|149830938|gb|EDM86028.1| ribosome-binding factor A [Ruminococcus obeum ATCC 29174]
Length = 127
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
Query: 110 LTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIR 169
+T++ VEV+ DL+ K ++SV G+ K+ I GL Y+R QL + + LR TPEIR
Sbjct: 35 MTSVMAVEVAPDLKTCKAFISVLGNKEAKDATIQGLNKAEGYIRRQLAKNLNLRNTPEIR 94
Query: 170 FIEDESFERGSRVIAILDRIKAEKEAAKSKNKEQ 203
FI DES E G + ++D + A ++A+ K +E+
Sbjct: 95 FILDESIEYGVNMSKLIDDV-ARRDASLGKTEEE 127
>gi|323485576|ref|ZP_08090920.1| hypothetical protein HMPREF9474_02671 [Clostridium symbiosum
WAL-14163]
gi|323401094|gb|EGA93448.1| hypothetical protein HMPREF9474_02671 [Clostridium symbiosum
WAL-14163]
Length = 139
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 56/90 (62%)
Query: 110 LTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIR 169
+TT+ VEV+ DL+ K Y+SV G + + + GLKS A ++R+QL +R+ LR TPE+
Sbjct: 35 MTTVVSVEVTPDLKFCKAYISVLGSEEAGKDTVQGLKSAASFIRTQLAKRINLRNTPELS 94
Query: 170 FIEDESFERGSRVIAILDRIKAEKEAAKSK 199
FI D+S E G + +++ + A + +K
Sbjct: 95 FILDQSIEYGVNMTRLINEVTAGMNESGAK 124
>gi|222529044|ref|YP_002572926.1| ribosome-binding factor A [Caldicellulosiruptor bescii DSM 6725]
gi|254789728|sp|B9MR49.1|RBFA_ANATD RecName: Full=Ribosome-binding factor A
gi|222455891|gb|ACM60153.1| ribosome-binding factor A [Caldicellulosiruptor bescii DSM 6725]
Length = 132
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 71/123 (57%), Gaps = 13/123 (10%)
Query: 73 VAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVF 132
V+++I++ELSD++ D L R + L +I V +S DL+ KVYVS+F
Sbjct: 9 VSEEIKKELSDIIQHD------------LKDPRLCAELISIVKVNMSKDLRHAKVYVSIF 56
Query: 133 GDDRGK-EVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRIKA 191
D+ K E + L++ Y+R ++ RR+ LR TPEI F D+S E G+R+ IL+++
Sbjct: 57 DKDKEKVETTMKALENAKPYIRREISRRISLRFTPEITFELDDSIEYGARISQILNQLNI 116
Query: 192 EKE 194
KE
Sbjct: 117 PKE 119
>gi|335045199|ref|ZP_08538222.1| ribosome-binding factor A [Oribacterium sp. oral taxon 108 str.
F0425]
gi|363896237|ref|ZP_09322791.1| ribosome-binding factor A [Oribacterium sp. ACB7]
gi|333758985|gb|EGL36542.1| ribosome-binding factor A [Oribacterium sp. oral taxon 108 str.
F0425]
gi|361961245|gb|EHL14463.1| ribosome-binding factor A [Oribacterium sp. ACB7]
Length = 138
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 58/92 (63%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLR 163
D +S ++ V+++ DLQ KVYVS G + I GLK+ A ++R +L + + LR
Sbjct: 29 DSRVSPFCDVTGVDLTPDLQYCKVYVSCLGSEESLGKTIEGLKAAAGFLRRELAQSLNLR 88
Query: 164 LTPEIRFIEDESFERGSRVIAILDRIKAEKEA 195
TPE++F+ D S E GSR+ A+++++K E EA
Sbjct: 89 HTPELQFVPDHSVEYGSRMDALINKVKLEDEA 120
>gi|169831090|ref|YP_001717072.1| ribosome-binding factor A [Candidatus Desulforudis audaxviator
MP104C]
gi|169637934|gb|ACA59440.1| ribosome-binding factor A [Candidatus Desulforudis audaxviator
MP104C]
Length = 119
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 72/120 (60%), Gaps = 19/120 (15%)
Query: 69 RVKMVAKQIQRELSDML--LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVK 126
R + +A+ I++E+SD+L + D L F T++ VEVS+DL+ K
Sbjct: 7 RPERLAEVIKKEISDLLRQMKDPRLGF-----------------VTVTAVEVSSDLRYAK 49
Query: 127 VYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
V+VSV G + ++ ++ L+ ++R++LG+R++LR TPE+ F+ D S E G+R+I I+
Sbjct: 50 VFVSVLGSNEDQDASLKVLRGAQGFIRTELGKRIRLRYTPEVSFVHDPSIEEGTRIIQII 109
>gi|331084716|ref|ZP_08333804.1| ribosome-binding factor A [Lachnospiraceae bacterium 9_1_43BFAA]
gi|330410810|gb|EGG90232.1| ribosome-binding factor A [Lachnospiraceae bacterium 9_1_43BFAA]
Length = 119
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 65/111 (58%), Gaps = 16/111 (14%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
RV M ++QRELS +L D + V P +T++ VEV+ DL+ K Y
Sbjct: 10 RVNM---EVQRELSS-ILRDGIKDPRVAP------------MTSVVAVEVAPDLKTCKAY 53
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERG 179
VSV GD++ ++ +AGL+S Y+R +L R+ +R TPE++F+ D+S E G
Sbjct: 54 VSVLGDEKAQQDTVAGLQSAEGYIRRELAHRLNMRNTPEVKFVLDQSIEYG 104
>gi|302387316|ref|YP_003823138.1| ribosome-binding factor A [Clostridium saccharolyticum WM1]
gi|302197944|gb|ADL05515.1| ribosome-binding factor A [Clostridium saccharolyticum WM1]
Length = 120
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 66/117 (56%), Gaps = 13/117 (11%)
Query: 73 VAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVF 132
+ ++QRELSD +++ + D + +TT+ +V+ DL+ K ++S+
Sbjct: 11 INMEVQRELSD------IIRLEI-------KDPRIHPMTTVVSAQVTPDLKYCKAFISIL 57
Query: 133 GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRI 189
GD+ + I GLKS Y+R +L RR+ LR TPEI+FI D+S E G + ++D +
Sbjct: 58 GDEEAGKATIEGLKSAEGYIRRELARRVNLRNTPEIKFILDQSIEYGVNMSRLIDEV 114
>gi|163752372|ref|ZP_02159567.1| ribosome-binding factor A [Shewanella benthica KT99]
gi|161327744|gb|EDP98931.1| ribosome-binding factor A [Shewanella benthica KT99]
Length = 140
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 83/154 (53%), Gaps = 22/154 (14%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + +Q+Q+EL+ +L D + + +G + T++DVEVS DL KV+
Sbjct: 7 RTRRIGQQLQQELAQVLHRD-------IKDPRVG-------MVTVNDVEVSRDLSYAKVF 52
Query: 129 VSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
V+ F +D K VA + L S A Y+RS + RMKLR+ PE+RFI D S G R+ ++
Sbjct: 53 VTFFEEDE-KIVAQKLEALSSAAGYIRSLVAGRMKLRVMPELRFIYDASLVEGMRMSNLV 111
Query: 187 DRIKAEKEAAKSKNKEQFESPDLPEDERDWEGDD 220
R+ EA + K K +S D D +G+D
Sbjct: 112 TRVIHNDEAKQKKAKRDEQSED-----NDLQGED 140
>gi|257066117|ref|YP_003152373.1| ribosome-binding factor A [Anaerococcus prevotii DSM 20548]
gi|256797997|gb|ACV28652.1| ribosome-binding factor A [Anaerococcus prevotii DSM 20548]
Length = 128
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 74/141 (52%), Gaps = 15/141 (10%)
Query: 66 NPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
N RR + ++ ++++ELS +L D L + L + ++ TI+DVEV+ DL
Sbjct: 2 NKRRTERISSEVKKELSKILRDD-------LNDPRLSTE----AMVTITDVEVTNDLSYA 50
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
YVSV GD KE + L+ Y++ +G RM+LR PE RF D S E G A
Sbjct: 51 DCYVSVLGDATNKEDVLEALEQAKGYIKILIGERMRLRSMPEFRFKIDNSIEHG----AY 106
Query: 186 LDRIKAEKEAAKSKNKEQFES 206
+D++ AE A K E+ E+
Sbjct: 107 MDKLIAETIAKDKKANEEREN 127
>gi|373455633|ref|ZP_09547462.1| ribosome-binding factor A [Dialister succinatiphilus YIT 11850]
gi|371934726|gb|EHO62506.1| ribosome-binding factor A [Dialister succinatiphilus YIT 11850]
Length = 117
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 71/125 (56%), Gaps = 14/125 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
RV+ + + I++E+S+MLL D L + +G T++ VEV+ DL+ +++
Sbjct: 5 RVRKIQEFIKQEVSNMLLHD-------LKDPRIG-------FVTVTGVEVTGDLREARIF 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VS+FG D K ++ L +VR +LG+R+K+ TPEI F ED S + G + +L +
Sbjct: 51 VSLFGSDEEKAASLEALNKGKGFVRRELGQRLKIYYTPEISFAEDTSLDYGMHIDGLLKK 110
Query: 189 IKAEK 193
I E+
Sbjct: 111 IHKEE 115
>gi|335040861|ref|ZP_08533982.1| Ribosome-binding factor A [Caldalkalibacillus thermarum TA2.A1]
gi|334179296|gb|EGL81940.1| Ribosome-binding factor A [Caldalkalibacillus thermarum TA2.A1]
Length = 117
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 71/124 (57%), Gaps = 14/124 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
RV V + I++ELS + + L + +G T++DVE+S DLQ +VY
Sbjct: 5 RVHRVGEAIKKELSQIFQQE-------LKDPRIG-------FVTVTDVEMSGDLQQAEVY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
++V G++ KE + L+ ++RS++GRR++LR TP++ F DES E G+R+ +L
Sbjct: 51 LTVLGNEEQKEQTLEALEKAKGFIRSEIGRRVRLRHTPQLIFKFDESIEYGNRIEKLLKE 110
Query: 189 IKAE 192
I E
Sbjct: 111 INQE 114
>gi|313888345|ref|ZP_07822016.1| ribosome-binding factor A [Peptoniphilus harei ACS-146-V-Sch2b]
gi|312845748|gb|EFR33138.1| ribosome-binding factor A [Peptoniphilus harei ACS-146-V-Sch2b]
Length = 117
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 68/114 (59%), Gaps = 13/114 (11%)
Query: 66 NPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
N +R+ +++++++ +S+++ + D + S+T+IS VEV+ DL
Sbjct: 2 NNKRINRISEEVRKTISNIVQNEL-------------KDPRIPSITSISHVEVTNDLSFA 48
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERG 179
KVYVSV GDD ++ A+ GL S +++ +L R+KLR PE+ FI+D+S E+
Sbjct: 49 KVYVSVLGDDYDRDEAVEGLNSAKGFIKKELAHRVKLRAMPELIFIKDDSIEKA 102
>gi|308806199|ref|XP_003080411.1| ribosome-binding factor A protein-like (ISS) [Ostreococcus tauri]
gi|116058871|emb|CAL54578.1| ribosome-binding factor A protein-like (ISS) [Ostreococcus tauri]
Length = 159
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 44/63 (69%)
Query: 130 SVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRI 189
S FG GK+ AI GLK YVR ++G RM LRLTPEIR I D+SFERG +V A+LD I
Sbjct: 12 SWFGSSIGKQNAIKGLKRMETYVRRKIGSRMSLRLTPEIRLIYDDSFERGQKVSALLDEI 71
Query: 190 KAE 192
+ E
Sbjct: 72 RQE 74
>gi|410667482|ref|YP_006919853.1| ribosome-binding factor A [Thermacetogenium phaeum DSM 12270]
gi|409105229|gb|AFV11354.1| ribosome-binding factor A [Thermacetogenium phaeum DSM 12270]
Length = 116
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 74/126 (58%), Gaps = 13/126 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + ++I+R ++D+L T+ D +S TT+++V+VS DL+ K+Y
Sbjct: 4 RANRLGEEIKRIVTDLLRTEI-------------KDPRISPFTTVTEVDVSKDLRYAKIY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VSV G+ ++ + GL++ + ++RS+LG++++LR PEI F D S + G ++ IL
Sbjct: 51 VSVLGEREEQQRTLEGLQNASGFIRSELGKQIRLRYNPEITFCLDSSIQHGLKINQILHD 110
Query: 189 IKAEKE 194
+ E+E
Sbjct: 111 LAKEQE 116
>gi|325661691|ref|ZP_08150314.1| ribosome-binding factor A [Lachnospiraceae bacterium 4_1_37FAA]
gi|325471944|gb|EGC75159.1| ribosome-binding factor A [Lachnospiraceae bacterium 4_1_37FAA]
Length = 119
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 65/111 (58%), Gaps = 16/111 (14%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
RV M ++QRELS +L D + V P +T++ VEV+ DL+ K Y
Sbjct: 10 RVNM---EVQRELSS-ILRDGIKDPRVAP------------MTSVVAVEVAPDLKTCKAY 53
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERG 179
+SV GD++ ++ +AGL+S Y+R +L R+ +R TPE++F+ D+S E G
Sbjct: 54 ISVLGDEKAQQDTVAGLQSAEGYIRRELAHRLNMRNTPEVKFVLDQSIEYG 104
>gi|255284462|ref|ZP_05349017.1| ribosome-binding factor A [Bryantella formatexigens DSM 14469]
gi|255265007|gb|EET58212.1| ribosome-binding factor A [Marvinbryantia formatexigens DSM 14469]
Length = 130
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 66/115 (57%), Gaps = 13/115 (11%)
Query: 73 VAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVF 132
V ++QREL+ ++ ++ D + LT++ VEV+ DL+ K Y+SV
Sbjct: 11 VNSEVQRELAGIIRSEI-------------KDPRIHPLTSVVLVEVAPDLKTCKAYISVL 57
Query: 133 GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
GD++ ++ + GL+S ++R QL + LR TPEIRFI D+S E G R+ +++
Sbjct: 58 GDEQAQQSTLEGLRSAVGFIRRQLAHNLNLRNTPEIRFILDQSIEYGVRMSKLIE 112
>gi|430762370|ref|YP_007218227.1| Ribosome-binding factor A [Thioalkalivibrio nitratireducens DSM
14787]
gi|430011994|gb|AGA34746.1| Ribosome-binding factor A [Thioalkalivibrio nitratireducens DSM
14787]
Length = 139
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 81/147 (55%), Gaps = 17/147 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + V QIQREL++++ + + + +G + T+S VEVS DL KV+
Sbjct: 9 RSERVGDQIQRELAELIRVE-------VKDPRVG-------MITLSGVEVSRDLAHAKVF 54
Query: 129 VS-VFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
+ + G+D+G E A GL A Y+R LG R++LR P +RFI D++ ERG+R+ A++D
Sbjct: 55 FTQLGGEDKGIE-AQQGLNHAAGYLRHALGTRLRLRSVPTLRFIYDDTPERGARISALID 113
Query: 188 RIKAEKEAAKSKNKEQFESPDLPEDER 214
AE A + ES D PE R
Sbjct: 114 SAIAEDTARHPEGAPSDESTD-PEPGR 139
>gi|258516330|ref|YP_003192552.1| ribosome-binding factor A [Desulfotomaculum acetoxidans DSM 771]
gi|257780035|gb|ACV63929.1| ribosome-binding factor A [Desulfotomaculum acetoxidans DSM 771]
Length = 119
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 72/123 (58%), Gaps = 14/123 (11%)
Query: 73 VAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVF 132
+A+ I++E+SDM++ + L + +G T+I+ VEVS DL K++VSV
Sbjct: 8 LAESIKKEVSDMIINE-------LKDPRIG-------FTSITSVEVSRDLSFAKIFVSVL 53
Query: 133 GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRIKAE 192
G + ++ + L ++R+++GRR++LR PE+ FI D+S G++++ +L ++ +
Sbjct: 54 GTEEEQKATVEALSRANGFIRAEIGRRIRLRHVPELAFISDQSIAHGTKIMKLLQDVQVQ 113
Query: 193 KEA 195
E
Sbjct: 114 GEG 116
>gi|355682233|ref|ZP_09062370.1| ribosome-binding factor A [Clostridium citroniae WAL-17108]
gi|354811132|gb|EHE95767.1| ribosome-binding factor A [Clostridium citroniae WAL-17108]
Length = 133
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 52/80 (65%)
Query: 110 LTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIR 169
+T++ VEV+ DL+ K Y+SV G++ + I GLKS YVR +L RR+ LR TPE++
Sbjct: 35 MTSVVSVEVTPDLKYCKAYISVLGNEDAAKATIEGLKSAEGYVRRELARRINLRNTPELK 94
Query: 170 FIEDESFERGSRVIAILDRI 189
FI D+S E G + ++D +
Sbjct: 95 FILDQSIEYGVNMSKLIDEV 114
>gi|347531980|ref|YP_004838743.1| ribosome-binding factor A [Roseburia hominis A2-183]
gi|345502128|gb|AEN96811.1| ribosome-binding factor A [Roseburia hominis A2-183]
Length = 131
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 55/86 (63%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLR 163
D ++ +T++ VEV+ DL+ K Y+SV GD+ ++ +AGL+S Y+R QL + LR
Sbjct: 29 DPRINPMTSVVTVEVAPDLKTCKAYISVLGDEESQKATLAGLRSAEGYIRRQLAHSINLR 88
Query: 164 LTPEIRFIEDESFERGSRVIAILDRI 189
TPEI F+ D+S E G R+ ++D +
Sbjct: 89 NTPEITFVLDQSIEYGVRMSKMIDDV 114
>gi|319649518|ref|ZP_08003674.1| ribosome-binding factor A [Bacillus sp. 2_A_57_CT2]
gi|317398680|gb|EFV79362.1| ribosome-binding factor A [Bacillus sp. 2_A_57_CT2]
Length = 126
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 64/95 (67%), Gaps = 3/95 (3%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEI 168
T++DV+V+ DLQ V++SV GD+ +E + GL ++RS++G+R++LR TPEI
Sbjct: 30 GFVTVTDVQVTGDLQQATVFISVLGDEEQRENTLRGLAKAKGFIRSEIGQRIRLRKTPEI 89
Query: 169 RFIEDESFERGSRVIAILDRIKAEKEAAKSKNKEQ 203
F DES + G+R+ ++L +I+ E +SK++++
Sbjct: 90 LFEFDESIDYGNRIESLLHQIQDE---GRSKDEDR 121
>gi|153814917|ref|ZP_01967585.1| hypothetical protein RUMTOR_01132 [Ruminococcus torques ATCC 27756]
gi|317500429|ref|ZP_07958653.1| ribosome-binding factor A [Lachnospiraceae bacterium 8_1_57FAA]
gi|331089564|ref|ZP_08338463.1| ribosome-binding factor A [Lachnospiraceae bacterium 3_1_46FAA]
gi|336438879|ref|ZP_08618500.1| ribosome-binding factor A [Lachnospiraceae bacterium 1_1_57FAA]
gi|145847948|gb|EDK24866.1| ribosome-binding factor A [Ruminococcus torques ATCC 27756]
gi|316898184|gb|EFV20231.1| ribosome-binding factor A [Lachnospiraceae bacterium 8_1_57FAA]
gi|330404932|gb|EGG84470.1| ribosome-binding factor A [Lachnospiraceae bacterium 3_1_46FAA]
gi|336017369|gb|EGN47131.1| ribosome-binding factor A [Lachnospiraceae bacterium 1_1_57FAA]
Length = 127
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 68/117 (58%), Gaps = 13/117 (11%)
Query: 73 VAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVF 132
V ++QRELS+ +L+ + D +S +T++ VEV+ DL+ K Y+SV
Sbjct: 11 VNAEVQRELSN------ILRGGI-------KDPRVSPMTSVVAVEVAPDLKTCKAYISVL 57
Query: 133 GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRI 189
GD++ ++ I GL+S ++R +L R + +R TPEI+FI D+S E G + +D +
Sbjct: 58 GDEKAQQDTIKGLQSAEGFIRRELARTINMRNTPEIKFIVDQSIEYGVNISKKIDEV 114
>gi|253573568|ref|ZP_04850911.1| ribosome-binding factor A [Paenibacillus sp. oral taxon 786 str.
D14]
gi|251847096|gb|EES75101.1| ribosome-binding factor A [Paenibacillus sp. oral taxon 786 str.
D14]
Length = 117
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 72/124 (58%), Gaps = 14/124 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R V +QI++ELS ++ ++ L + +G T++ V+V+ DL KVY
Sbjct: 5 RTGRVGEQIKKELSVLIQSE-------LKDPRIG-------FVTVTGVDVTNDLSQAKVY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+SVFGD+ K ++ GL+ ++R+++G+R++LR TPE+ F DES GSR+ +L
Sbjct: 51 LSVFGDEEQKNESLKGLEKATGFLRTEIGKRIRLRHTPELIFKIDESIAYGSRIEKLLGE 110
Query: 189 IKAE 192
I E
Sbjct: 111 ITQE 114
>gi|358064975|ref|ZP_09151530.1| ribosome-binding factor A [Clostridium hathewayi WAL-18680]
gi|356696813|gb|EHI58417.1| ribosome-binding factor A [Clostridium hathewayi WAL-18680]
Length = 121
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 66/114 (57%), Gaps = 12/114 (10%)
Query: 76 QIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVFGDD 135
++QRELS+++ T+ + R +++ T+ VEV+ DL+ K Y+S+ G +
Sbjct: 14 EVQRELSEIIRTE------------IKDPRVSNAMITVVAVEVTPDLKYCKAYISMLGSE 61
Query: 136 RGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRI 189
A+ GLK+ YVR +L RR+ LR TPEI+F+ D+S E G + ++D +
Sbjct: 62 EAAASALEGLKNAVGYVRKELARRVNLRNTPEIKFVLDQSIEYGVAMSKLIDDV 115
>gi|320530112|ref|ZP_08031182.1| ribosome-binding factor A [Selenomonas artemidis F0399]
gi|320137545|gb|EFW29457.1| ribosome-binding factor A [Selenomonas artemidis F0399]
Length = 112
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 14/120 (11%)
Query: 77 IQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVFGDDR 136
+++E+SD++L D L + +G T++ V + DL+ K+YVSV GD++
Sbjct: 1 MKQEISDIILHD-------LKDPRIG-------FVTVTSVACTEDLREAKIYVSVMGDEK 46
Query: 137 GKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRIKAEKEAA 196
G + ++AGL YVR ++GRR++LR TPEI F D S + IL+ + EK A
Sbjct: 47 GVQESLAGLNRALGYVRREIGRRIRLRFTPEISFALDTSLNYSDHIQRILNTLHEEKPAG 106
>gi|289207911|ref|YP_003459977.1| ribosome-binding factor A [Thioalkalivibrio sp. K90mix]
gi|288943542|gb|ADC71241.1| ribosome-binding factor A [Thioalkalivibrio sp. K90mix]
Length = 147
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 88/150 (58%), Gaps = 22/150 (14%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R V QIQREL++++ + + + +G + T++DVEVS DL KV+
Sbjct: 9 RSDRVGDQIQRELAELIRLE-------VKDPRVG-------MITLADVEVSRDLAHAKVF 54
Query: 129 VS-VFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
+ + G+++G+E A GL A ++R LG+RM+LR P++RF+ D++ ERG+R+ +++D
Sbjct: 55 FTQLGGEEKGRE-AQQGLNHAAGFLRRALGQRMRLRSVPQLRFVYDDTPERGARMSSLID 113
Query: 188 RIKAEKEA-----AKSKNKEQFESPDLPED 212
+ AE A S + +Q ES D P+D
Sbjct: 114 QALAEDRAHHADPDGSDSGDQGESED-PKD 142
>gi|430750268|ref|YP_007213176.1| ribosome-binding factor A [Thermobacillus composti KWC4]
gi|430734233|gb|AGA58178.1| ribosome-binding factor A [Thermobacillus composti KWC4]
Length = 117
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 73/126 (57%), Gaps = 14/126 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
RV VA++I++E+S +L + L + +G T++ V+V+ DL VY
Sbjct: 5 RVSRVAERIKQEMSQILQQE-------LKDPRIG-------FVTVTGVDVTNDLSQATVY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+SV G+D KE +A L ++R+++GRR++LR PE+ F D S E GSR+ +L++
Sbjct: 51 LSVLGNDEQKEATLAALGKARGFIRTEIGRRIQLRHVPELAFKFDSSIEYGSRIEQLLEQ 110
Query: 189 IKAEKE 194
+ E+E
Sbjct: 111 LNREQE 116
>gi|227499289|ref|ZP_03929401.1| ribosome-binding factor A [Anaerococcus tetradius ATCC 35098]
gi|227218640|gb|EEI83874.1| ribosome-binding factor A [Anaerococcus tetradius ATCC 35098]
Length = 125
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 73/138 (52%), Gaps = 15/138 (10%)
Query: 66 NPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
N RR + ++ ++++ELS +L D L + L + ++ +I+DVEV+ DL
Sbjct: 2 NKRRTERISSEVKKELSKILRDD-------LSDPRLSNE----AMVSITDVEVTNDLSFA 50
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
Y+SV GD++ KE + L Y++ +G RM+LR PE RF D S E G A
Sbjct: 51 DCYISVLGDEQKKEDVLDALDQAKGYIKILIGERMRLRSMPEFRFKLDNSIEHG----AY 106
Query: 186 LDRIKAEKEAAKSKNKEQ 203
+D++ AE A K EQ
Sbjct: 107 MDKLIAETIAKDKKANEQ 124
>gi|376260773|ref|YP_005147493.1| ribosome-binding factor A [Clostridium sp. BNL1100]
gi|373944767|gb|AEY65688.1| ribosome-binding factor A [Clostridium sp. BNL1100]
Length = 117
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 71/124 (57%), Gaps = 13/124 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R+ +++++++E+S+++ + D L S+ +I V+ DL+ KV+
Sbjct: 4 RIVRISEEVKKEISNIIQNEI-------------KDPRLPSMVSIVSCTVTKDLRYAKVF 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VSV G++ K+ AI+ LKS A ++R +LG R++LR TPEI F D S E G + +LD
Sbjct: 51 VSVLGNEEQKKNAISALKSAAGFIRRELGHRVQLRYTPEIHFELDTSIEHGIHINKLLDD 110
Query: 189 IKAE 192
K E
Sbjct: 111 AKKE 114
>gi|225027051|ref|ZP_03716243.1| hypothetical protein EUBHAL_01307 [Eubacterium hallii DSM 3353]
gi|224955515|gb|EEG36724.1| ribosome-binding factor A [Eubacterium hallii DSM 3353]
Length = 128
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 60/99 (60%), Gaps = 5/99 (5%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLR 163
D ++ +T++ VEV+ DL+ K Y+SV GD +E + GL+S Y+R +L R + LR
Sbjct: 29 DPRIAPMTSVVSVEVAPDLKTCKAYISVLGDKEAQESTLEGLRSAHGYIRRELARSINLR 88
Query: 164 LTPEIRFIEDESFERGSRVIAILDRIKA-----EKEAAK 197
TP++RFI D+S E G + +D I A E+EA++
Sbjct: 89 NTPDVRFILDQSIEYGVSMSKKIDEINAAMHEREREASE 127
>gi|302872112|ref|YP_003840748.1| ribosome-binding factor A [Caldicellulosiruptor obsidiansis OB47]
gi|302574971|gb|ADL42762.1| ribosome-binding factor A [Caldicellulosiruptor obsidiansis OB47]
Length = 132
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 71/123 (57%), Gaps = 13/123 (10%)
Query: 73 VAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVF 132
V+++I++ELSD++ + L R + L ++ V +S DL+ KVYVS+F
Sbjct: 9 VSEEIKKELSDII------------QHELKDPRLCAELISVVKVNMSKDLRYAKVYVSIF 56
Query: 133 GDDRGK-EVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRIKA 191
D+ K E + L++ Y+R ++ RR+ LR TPEI F D+S E G+R+ IL+++
Sbjct: 57 DKDKEKVESTMKALENAKPYIRREISRRISLRFTPEITFELDDSIEYGARISQILNQLNI 116
Query: 192 EKE 194
KE
Sbjct: 117 SKE 119
>gi|225374834|ref|ZP_03752055.1| hypothetical protein ROSEINA2194_00455 [Roseburia inulinivorans DSM
16841]
gi|225213295|gb|EEG95649.1| hypothetical protein ROSEINA2194_00455 [Roseburia inulinivorans DSM
16841]
Length = 124
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 56/86 (65%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLR 163
D ++ LT++ VEV+ DL+ K Y+SV GD++ ++ I GLKS Y+R+ L + + LR
Sbjct: 29 DPRINPLTSVVAVEVAPDLKTCKAYISVLGDEKSQQDTIKGLKSAEGYIRTMLAKSINLR 88
Query: 164 LTPEIRFIEDESFERGSRVIAILDRI 189
TP+I FI D+S E G ++ ++D +
Sbjct: 89 NTPQITFILDQSIEYGVKMSKMIDDV 114
>gi|210612469|ref|ZP_03289327.1| hypothetical protein CLONEX_01528 [Clostridium nexile DSM 1787]
gi|210151577|gb|EEA82584.1| hypothetical protein CLONEX_01528 [Clostridium nexile DSM 1787]
Length = 123
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 69/117 (58%), Gaps = 13/117 (11%)
Query: 73 VAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVF 132
V ++QRELS+ +++ + D ++ +T++ VEV+ DL+ K Y+SV
Sbjct: 11 VNGEVQRELSN------IIRGGI-------KDPRVAPMTSVVAVEVAPDLKTCKAYISVL 57
Query: 133 GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRI 189
GD++ +E I GL+S Y+R +L R++ +R TPEI+F+ D+S G + ++D +
Sbjct: 58 GDEKAQEDTIKGLQSAEGYIRRELARKLNMRNTPEIKFVMDQSIAYGVAMSKMIDDV 114
>gi|150390434|ref|YP_001320483.1| ribosome-binding factor A [Alkaliphilus metalliredigens QYMF]
gi|172052480|sp|A6TRK6.1|RBFA_ALKMQ RecName: Full=Ribosome-binding factor A
gi|149950296|gb|ABR48824.1| ribosome-binding factor A [Alkaliphilus metalliredigens QYMF]
Length = 138
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 82/150 (54%), Gaps = 14/150 (9%)
Query: 63 CMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADL 122
+A PR V +A++I++ +S M+ D D ++ +T+I +V V+ DL
Sbjct: 3 ALAYPR-VNRLAEEIKKIISHMIRNDL-------------RDPRIAKMTSIIEVNVTRDL 48
Query: 123 QVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
+ +Y+SV GD + KE I GLK + ++R ++GR++ R TPE+ F DES ERG +
Sbjct: 49 RFATIYISVLGDQQEKEETIEGLKKSSGFIRKEVGRQITARFTPELIFKLDESIERGVYM 108
Query: 183 IAILDRIKAEKEAAKSKNKEQFESPDLPED 212
++ ++ + K + E+ +S + ED
Sbjct: 109 YDVISKVTQKDMDEKKNSDEKRDSDEKLED 138
>gi|227486450|ref|ZP_03916766.1| ribosome-binding factor A [Anaerococcus lactolyticus ATCC 51172]
gi|227235631|gb|EEI85646.1| ribosome-binding factor A [Anaerococcus lactolyticus ATCC 51172]
Length = 127
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 75/140 (53%), Gaps = 15/140 (10%)
Query: 66 NPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
N +R ++ +++RE+S +++ D L + L A+ ++ +++DVEV+ DL
Sbjct: 2 NKKRTARISSEVKREISKIIMDD-------LNDPRLSAE----AMVSVTDVEVTNDLSYA 50
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
+Y+SV GD++ K+ + L Y++ +G RM+LR PE RF D S E G A
Sbjct: 51 DIYISVLGDNKTKDGVMEALNQAKGYIKILIGERMRLRSMPEFRFKFDNSIEHG----AY 106
Query: 186 LDRIKAEKEAAKSKNKEQFE 205
+D++ AE A K E E
Sbjct: 107 MDKLIAETIAKDKKANEARE 126
>gi|333979923|ref|YP_004517868.1| Ribosome-binding factor A [Desulfotomaculum kuznetsovii DSM 6115]
gi|333823404|gb|AEG16067.1| Ribosome-binding factor A [Desulfotomaculum kuznetsovii DSM 6115]
Length = 119
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 74/130 (56%), Gaps = 15/130 (11%)
Query: 67 PRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVK 126
P R + +A+ I++E+SDML + L + +G TI+ VEVS DL+ +
Sbjct: 2 PYRPERLAEIIKKEVSDMLRDE-------LKDPRIG-------FVTITGVEVSTDLRYAR 47
Query: 127 VYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++ SV G + + ++ L YVRS+LGRR++LR PEI F D S +RG RV+ +L
Sbjct: 48 IFFSVLGSEEEAKASLEALNRARGYVRSELGRRIRLRYAPEISFKLDPSIQRGIRVMELL 107
Query: 187 DRIKAEKEAA 196
+K E+ AA
Sbjct: 108 HDVK-ERGAA 116
>gi|408356819|ref|YP_006845350.1| ribosome-binding factor A [Amphibacillus xylanus NBRC 15112]
gi|407727590|dbj|BAM47588.1| ribosome-binding factor A [Amphibacillus xylanus NBRC 15112]
Length = 116
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 53/74 (71%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEI 168
TI+DVEV+ DLQ KV+++VFGD + +E +AGL+ ++RS++G++++LR TPE+
Sbjct: 31 GFVTITDVEVTGDLQQAKVFLTVFGDTKKEEETLAGLEKAKGFIRSEVGKQIRLRKTPEL 90
Query: 169 RFIEDESFERGSRV 182
F D + E G+R+
Sbjct: 91 IFEIDRAIETGNRI 104
>gi|407795698|ref|ZP_11142656.1| ribosome-binding factor A [Salimicrobium sp. MJ3]
gi|407020039|gb|EKE32753.1| ribosome-binding factor A [Salimicrobium sp. MJ3]
Length = 117
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 66/117 (56%), Gaps = 20/117 (17%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R VA+QI++EL D++ + D + F T++D EV+ DLQ
Sbjct: 5 RANRVAEQIKKELGDIISKKIKDPRIGFV-----------------TVTDAEVTGDLQQA 47
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
VY++V G + + +AGL ++RS++G+R++LR TPEI F DE+ ERG+R+
Sbjct: 48 TVYITVLGGEPELQDTLAGLGKARGFIRSEIGKRIRLRKTPEITFEIDEAVERGNRI 104
>gi|312134899|ref|YP_004002237.1| ribosome-binding factor a [Caldicellulosiruptor owensensis OL]
gi|311774950|gb|ADQ04437.1| ribosome-binding factor A [Caldicellulosiruptor owensensis OL]
Length = 133
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 73/132 (55%), Gaps = 13/132 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
M R V+++I++ELSD++ + L R + L +I V +S DL+
Sbjct: 1 MLQFERSDRVSEEIKKELSDII------------QHELKDPRLCAELISIVKVNMSKDLR 48
Query: 124 VVKVYVSVFGDDRGK-EVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
KVYVS+F D+ K E + L++ Y+R ++ RR+ LR TPEI F D+S E G+R+
Sbjct: 49 HAKVYVSIFDKDKEKVESTMKALENAKPYIRREISRRISLRFTPEITFELDDSIEYGARI 108
Query: 183 IAILDRIKAEKE 194
IL+++ KE
Sbjct: 109 SQILNQLNISKE 120
>gi|255524227|ref|ZP_05391186.1| ribosome-binding factor A [Clostridium carboxidivorans P7]
gi|296185348|ref|ZP_06853758.1| ribosome-binding factor A [Clostridium carboxidivorans P7]
gi|255512052|gb|EET88333.1| ribosome-binding factor A [Clostridium carboxidivorans P7]
gi|296050182|gb|EFG89606.1| ribosome-binding factor A [Clostridium carboxidivorans P7]
Length = 121
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 71/126 (56%), Gaps = 14/126 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + ++++RE+S ++ D D LS++ +++ V+V+ DL+ KVY
Sbjct: 5 RSGRINEEMKREISTIIQNDI-------------KDPRLSAMISVTKVDVTKDLRYAKVY 51
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VS+FGD+ K LK A ++R ++G ++ LR TPEI D + E+G + A+L +
Sbjct: 52 VSIFGDEESKNSTFEALKGSAGFIRREIGHKINLRYTPEILIELDNTIEQGMHIDALLHK 111
Query: 189 IKAEKE 194
IK EKE
Sbjct: 112 IK-EKE 116
>gi|118444128|ref|YP_878208.1| ribosome-binding factor A [Clostridium novyi NT]
gi|166218434|sp|A0Q0Q6.1|RBFA_CLONN RecName: Full=Ribosome-binding factor A
gi|118134584|gb|ABK61628.1| ribosome-binding factor A [Clostridium novyi NT]
Length = 121
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 71/125 (56%), Gaps = 13/125 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R+ + +++++E+S+++ D D L+ + +++ VEV+ DL+ KV+
Sbjct: 5 RLGRINEEVKKEISNIIRDDI-------------HDPRLTGMVSVTRVEVTNDLRYAKVF 51
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+S+FG D K + LKS A ++R ++G R+KLR TPEI DES E G + +L
Sbjct: 52 ISIFGSDESKTETLEALKSSAGFIRREVGHRVKLRYTPEILLELDESIEHGMHINDLLSN 111
Query: 189 IKAEK 193
+K +K
Sbjct: 112 LKEKK 116
>gi|134299803|ref|YP_001113299.1| ribosome-binding factor A [Desulfotomaculum reducens MI-1]
gi|172044303|sp|A4J5X1.1|RBFA_DESRM RecName: Full=Ribosome-binding factor A
gi|134052503|gb|ABO50474.1| ribosome-binding factor A [Desulfotomaculum reducens MI-1]
Length = 120
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 73/125 (58%), Gaps = 14/125 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + VA+ I++E++D++ D + + +G TI+ VEV+ DL K++
Sbjct: 4 RPERVAEAIKKEVADLIRND-------IKDPRIG-------FVTITGVEVTRDLSFAKIF 49
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+SV G D ++ ++ L+ A Y+RS++GRR+KLR PE+ F D S + G+R+ IL
Sbjct: 50 ISVMGSDAHRQETLSILQKSAGYMRSEIGRRIKLRHAPELIFKLDTSLDHGTRIAEILHE 109
Query: 189 IKAEK 193
I +++
Sbjct: 110 INSQE 114
>gi|91792368|ref|YP_562019.1| ribosome-binding factor A [Shewanella denitrificans OS217]
gi|123061155|sp|Q12QI0.1|RBFA_SHEDO RecName: Full=Ribosome-binding factor A
gi|91714370|gb|ABE54296.1| ribosome-binding factor A [Shewanella denitrificans OS217]
Length = 142
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 83/150 (55%), Gaps = 15/150 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + +A+Q+Q+EL+ +L D + + +G T++DV+VS DL KV+
Sbjct: 7 RTRRIAQQLQQELAVILQRD-------MKDPRIG-------FVTVNDVDVSRDLSYAKVF 52
Query: 129 VSVFGDDRG-KEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
V+ + +D E IA L + A YVR+ + RMKLR+ PE+RFI D S G R+ ++
Sbjct: 53 VTFYEEDLTLVEQKIAALTAAAPYVRTLVAGRMKLRVMPELRFIYDSSLVEGMRMSNLVS 112
Query: 188 RIKAEKEAAKSKNKEQFESPDLPEDERDWE 217
++ +A + + + ++P + E E+D +
Sbjct: 113 QVITNDKAKQKQAGREDDTPSVDEQEKDTD 142
>gi|333370985|ref|ZP_08462954.1| ribosome-binding factor A [Desmospora sp. 8437]
gi|332976851|gb|EGK13676.1| ribosome-binding factor A [Desmospora sp. 8437]
Length = 119
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 70/121 (57%), Gaps = 14/121 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R V +Q+++ELS +L + + + +G T++ VE+S DLQ KVY
Sbjct: 5 RASRVGEQVKKELSYVLQHE-------MKDPRVG-------FVTVTAVEMSGDLQQAKVY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+SV GD+ K+ + GL+ ++R+++GRR++LR TPE+ F DES E G + +L+
Sbjct: 51 ISVLGDEEKKKETLEGLEKAKGFLRTEIGRRVQLRHTPELIFKFDESIEHGQHISKLLEE 110
Query: 189 I 189
+
Sbjct: 111 V 111
>gi|402303074|ref|ZP_10822172.1| ribosome-binding factor A [Selenomonas sp. FOBRC9]
gi|400379304|gb|EJP32148.1| ribosome-binding factor A [Selenomonas sp. FOBRC9]
Length = 112
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 14/120 (11%)
Query: 77 IQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVFGDDR 136
+++E+SD++L D L + +G T++ V + DL+ K+YVSV GD++
Sbjct: 1 MKQEISDIILHD-------LKDPRIG-------FVTVTSVACTEDLREAKIYVSVMGDEK 46
Query: 137 GKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRIKAEKEAA 196
G + ++AGL YVR ++GRR++LR TPEI F D S + IL+ + EK A
Sbjct: 47 GVQESLAGLNRALGYVRREIGRRIRLRFTPEISFALDISLNYSDHIQRILNTLHEEKPAG 106
>gi|339443400|ref|YP_004709405.1| ribosome-binding factor A [Clostridium sp. SY8519]
gi|338902801|dbj|BAK48303.1| ribosome-binding factor A [Clostridium sp. SY8519]
Length = 136
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 49/80 (61%)
Query: 110 LTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIR 169
LT++S VEV+ DL+ K Y+SV G + +E + GLKS A Y+R L + + LR TPEIR
Sbjct: 35 LTSVSGVEVAPDLKTCKAYISVLGTEEEQEKTVEGLKSAAGYIRRCLAKSLNLRNTPEIR 94
Query: 170 FIEDESFERGSRVIAILDRI 189
FI D S G + +D I
Sbjct: 95 FISDRSIAYGVEMSKKIDEI 114
>gi|291550233|emb|CBL26495.1| ribosome-binding factor A [Ruminococcus torques L2-14]
Length = 124
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 66/117 (56%), Gaps = 13/117 (11%)
Query: 73 VAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVF 132
V ++QRELS+ +L+ + D ++ LT++ VEV+ DL+ K Y+SV
Sbjct: 11 VNAEVQRELSN------ILRGGI-------KDPRVAPLTSVVAVEVAPDLKTCKAYISVL 57
Query: 133 GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRI 189
GD + +E I GL+S Y+R +L R + +R TP+I FI D+S E G + +D +
Sbjct: 58 GDKKAQEDTIKGLQSAEGYIRRELARTVNMRNTPQITFIVDQSIEYGVNISKKIDEV 114
>gi|381210028|ref|ZP_09917099.1| ribosome-binding factor A [Lentibacillus sp. Grbi]
Length = 113
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 67/118 (56%), Gaps = 14/118 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R VA+Q+++EL + L+ K+ V T++DVEV+ DLQ K++
Sbjct: 5 RANRVAEQMKKELGE-LIGQKIKDPRV-------------GFVTVTDVEVTGDLQQAKIF 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
+SV G + K + GL ++RS++G+R++LR TPEI F DE+ E G+R+ +L
Sbjct: 51 ISVLGSEEEKHDTLVGLAKAKGFIRSEIGKRIRLRKTPEISFEFDEALEHGNRIEELL 108
>gi|311030084|ref|ZP_07708174.1| ribosome-binding factor A [Bacillus sp. m3-13]
Length = 130
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 73/131 (55%), Gaps = 22/131 (16%)
Query: 59 KTVKCMANPRRVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISD 115
K VK M R V +Q+++ELSD++ + D + F T++D
Sbjct: 5 KGVKGMT--LRSNRVGEQMKKELSDIIGRKIKDPRVGFV-----------------TVTD 45
Query: 116 VEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDES 175
V+V+ DLQ KV++SV GDD ++ + GL ++RS++GRR++LR TPE+ F DES
Sbjct: 46 VQVTGDLQQAKVFISVLGDDEKRQDTLIGLAKAKGFIRSEIGRRIRLRKTPELFFEFDES 105
Query: 176 FERGSRVIAIL 186
G+ + +++
Sbjct: 106 IAYGNHINSLI 116
>gi|293115580|ref|ZP_06604543.1| ribosome-binding factor A [Butyrivibrio crossotus DSM 2876]
gi|292808920|gb|EFF68125.1| ribosome-binding factor A [Butyrivibrio crossotus DSM 2876]
Length = 112
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 54/89 (60%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLR 163
D ++ +T++ V+V+ DL+ K Y+SV GD ++ I GLKS A Y+R+ L + + LR
Sbjct: 22 DPRINPMTSVVAVDVAPDLKTCKAYISVLGDKDSQDSTITGLKSAASYIRTLLAKTVNLR 81
Query: 164 LTPEIRFIEDESFERGSRVIAILDRIKAE 192
TPEI FI D+S E G + ++D +
Sbjct: 82 NTPEITFILDQSIEYGVNMSRLIDEVNGN 110
>gi|239626261|ref|ZP_04669292.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239520491|gb|EEQ60357.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 133
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 52/80 (65%)
Query: 110 LTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIR 169
+T++ VEV+ DL+ + Y+SV G++ + I GLKS YVR +L RR+ LR TPE++
Sbjct: 35 MTSVVSVEVTPDLKYCRAYISVLGNEDAAKATIEGLKSAEGYVRRELARRINLRNTPELK 94
Query: 170 FIEDESFERGSRVIAILDRI 189
FI D+S E G + ++D +
Sbjct: 95 FILDQSIEYGVNMSKLIDEV 114
>gi|366166637|ref|ZP_09466392.1| ribosome-binding factor A [Acetivibrio cellulolyticus CD2]
Length = 118
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 56/81 (69%)
Query: 107 LSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTP 166
LS L ++++V V+ DL+ KV+VS+ G D K+ A+ GLKS A ++R ++G R++LR TP
Sbjct: 28 LSRLISVTNVNVTKDLRYAKVFVSIMGSDEEKKNALDGLKSAAGFIRREVGHRIQLRYTP 87
Query: 167 EIRFIEDESFERGSRVIAILD 187
EI+F D S E G+ + +++
Sbjct: 88 EIQFELDNSIEHGAYISKLIN 108
>gi|168187907|ref|ZP_02622542.1| ribosome-binding factor A [Clostridium botulinum C str. Eklund]
gi|169294249|gb|EDS76382.1| ribosome-binding factor A [Clostridium botulinum C str. Eklund]
Length = 121
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 72/126 (57%), Gaps = 13/126 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R+ + +++++E+S+++ D D L+ + +++ VEV+ DL+ KV+
Sbjct: 5 RLGRINEEVKKEISNIIRDDI-------------HDPRLTGMVSVTRVEVTNDLRYAKVF 51
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+S+FG D K + LKS A ++R ++G R+KLR TPEI DES E G + +L
Sbjct: 52 ISIFGSDESKAETLEALKSSAGFIRREVGHRVKLRYTPEIILELDESIEHGMHINDLLSN 111
Query: 189 IKAEKE 194
+K +K+
Sbjct: 112 LKEKKK 117
>gi|312622700|ref|YP_004024313.1| ribosome-binding factor a [Caldicellulosiruptor kronotskyensis
2002]
gi|312793239|ref|YP_004026162.1| ribosome-binding factor a [Caldicellulosiruptor kristjanssonii
177R1B]
gi|344995757|ref|YP_004798100.1| ribosome-binding factor A [Caldicellulosiruptor lactoaceticus 6A]
gi|312180379|gb|ADQ40549.1| ribosome-binding factor A [Caldicellulosiruptor kristjanssonii
177R1B]
gi|312203167|gb|ADQ46494.1| ribosome-binding factor A [Caldicellulosiruptor kronotskyensis
2002]
gi|343963976|gb|AEM73123.1| Ribosome-binding factor A [Caldicellulosiruptor lactoaceticus 6A]
Length = 132
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 70/123 (56%), Gaps = 13/123 (10%)
Query: 73 VAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVF 132
V+++I++ELSD++ D L R + L +I V +S DL+ KVYVS+F
Sbjct: 9 VSEEIKKELSDIIQHD------------LKDPRLCAELISIVKVNMSKDLRHAKVYVSIF 56
Query: 133 GDDRGK-EVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRIKA 191
D+ K E + L++ Y+R ++ +R+ LR TPEI F D S E G+R+ IL+++
Sbjct: 57 DKDKEKVESTMKALENAKPYIRREISKRISLRFTPEITFELDNSIEYGARISQILNQLNI 116
Query: 192 EKE 194
KE
Sbjct: 117 SKE 119
>gi|212696547|ref|ZP_03304675.1| hypothetical protein ANHYDRO_01085 [Anaerococcus hydrogenalis DSM
7454]
gi|325847937|ref|ZP_08170108.1| ribosome-binding factor A [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
gi|212676483|gb|EEB36090.1| hypothetical protein ANHYDRO_01085 [Anaerococcus hydrogenalis DSM
7454]
gi|325480806|gb|EGC83860.1| ribosome-binding factor A [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
Length = 127
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 74/140 (52%), Gaps = 18/140 (12%)
Query: 66 NPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
+ RR ++ Q+Q+ELS +L D + + L + + +I+DVEV+ DL
Sbjct: 2 DKRRTLKISSQMQKELSKILAED-------INDPRLSD----NVIVSITDVEVTNDLSYA 50
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
++VSV GDD KE I L+ Y++ +G RM+LR PE RF D S E G
Sbjct: 51 DIFVSVLGDDSKKESVIEALEQAKGYMKKLIGERMRLRSMPEFRFKYDNSIEHG----VY 106
Query: 186 LDRIKAE---KEAAKSKNKE 202
+D++ AE K+ +KN+E
Sbjct: 107 MDKLIAETIKKDEKNAKNRE 126
>gi|354581531|ref|ZP_09000435.1| ribosome-binding factor A [Paenibacillus lactis 154]
gi|353201859|gb|EHB67312.1| ribosome-binding factor A [Paenibacillus lactis 154]
Length = 117
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 72/126 (57%), Gaps = 14/126 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R V +QI++ELS ++ T+ + + +G T++ V+V+ DL KVY
Sbjct: 5 RTGRVGEQIKKELSQLIQTE-------IKDPRIG-------FITVTGVDVTNDLSQAKVY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+SV GD+ K ++ GL+ ++RS+LG+R++LR PE+ F DES GSR+ +L+
Sbjct: 51 LSVLGDEEQKAASLKGLEKATGFLRSELGKRIRLRHVPELIFKFDESIAYGSRIEKLLNE 110
Query: 189 IKAEKE 194
I +E
Sbjct: 111 IGEREE 116
>gi|18310667|ref|NP_562601.1| ribosome-binding factor A [Clostridium perfringens str. 13]
gi|110800717|ref|YP_696372.1| ribosome-binding factor A [Clostridium perfringens ATCC 13124]
gi|110802728|ref|YP_698972.1| ribosome-binding factor A [Clostridium perfringens SM101]
gi|168211427|ref|ZP_02637052.1| ribosome-binding factor A [Clostridium perfringens B str. ATCC
3626]
gi|168214482|ref|ZP_02640107.1| ribosome-binding factor A [Clostridium perfringens CPE str. F4969]
gi|168216972|ref|ZP_02642597.1| ribosome-binding factor A [Clostridium perfringens NCTC 8239]
gi|169342675|ref|ZP_02863716.1| ribosome-binding factor A [Clostridium perfringens C str. JGS1495]
gi|182626365|ref|ZP_02954119.1| ribosome-binding factor A [Clostridium perfringens D str. JGS1721]
gi|422346355|ref|ZP_16427269.1| ribosome-binding factor A [Clostridium perfringens WAL-14572]
gi|422874606|ref|ZP_16921091.1| ribosome-binding factor A [Clostridium perfringens F262]
gi|20978576|sp|Q8XJR9.1|RBFA_CLOPE RecName: Full=Ribosome-binding factor A
gi|123049758|sp|Q0TPR8.1|RBFA_CLOP1 RecName: Full=Ribosome-binding factor A
gi|123146056|sp|Q0SSD5.1|RBFA_CLOPS RecName: Full=Ribosome-binding factor A
gi|18145348|dbj|BAB81391.1| ribosome-binding factor A [Clostridium perfringens str. 13]
gi|110675364|gb|ABG84351.1| ribosome-binding factor A [Clostridium perfringens ATCC 13124]
gi|110683229|gb|ABG86599.1| ribosome-binding factor A [Clostridium perfringens SM101]
gi|169299181|gb|EDS81251.1| ribosome-binding factor A [Clostridium perfringens C str. JGS1495]
gi|170710576|gb|EDT22758.1| ribosome-binding factor A [Clostridium perfringens B str. ATCC
3626]
gi|170714032|gb|EDT26214.1| ribosome-binding factor A [Clostridium perfringens CPE str. F4969]
gi|177908316|gb|EDT70864.1| ribosome-binding factor A [Clostridium perfringens D str. JGS1721]
gi|182380987|gb|EDT78466.1| ribosome-binding factor A [Clostridium perfringens NCTC 8239]
gi|373225900|gb|EHP48227.1| ribosome-binding factor A [Clostridium perfringens WAL-14572]
gi|380304247|gb|EIA16536.1| ribosome-binding factor A [Clostridium perfringens F262]
Length = 116
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 77/128 (60%), Gaps = 15/128 (11%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MAN R K + +++++E+SD++ D L+++ +++ VEV+ DL+
Sbjct: 1 MANFRG-KRINEEVRKEVSDIIRNQ-------------IKDPRLTAMVSVTQVEVTKDLR 46
Query: 124 VVKVYVSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
KV+VS+F +D KE ++ LKS A ++R ++G R+KLR TPEI F ED S + +
Sbjct: 47 YAKVFVSLFAKNDEEKEESLKALKSSAGFIRREVGNRVKLRSTPEILFEEDNSIDNAMYI 106
Query: 183 IAILDRIK 190
++L++IK
Sbjct: 107 ESLLNKIK 114
>gi|291523278|emb|CBK81571.1| ribosome-binding factor A [Coprococcus catus GD/7]
Length = 130
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 60/102 (58%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLR 163
D +S +T++ VEV+ DL+ K Y+SV GD ++ +AGLKS ++R +L R + LR
Sbjct: 29 DPRISPMTSVVAVEVAPDLKQCKAYISVLGDKDAQDATLAGLKSAIGFIRRELARTVNLR 88
Query: 164 LTPEIRFIEDESFERGSRVIAILDRIKAEKEAAKSKNKEQFE 205
TPEI F+ D+S E G + ++D + E + + +E E
Sbjct: 89 NTPEIHFVLDQSIEYGVNMSKLIDDVVRSDEGKEHEGEEDNE 130
>gi|258511416|ref|YP_003184850.1| ribosome-binding factor A [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|257478142|gb|ACV58461.1| ribosome-binding factor A [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length = 118
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 72/127 (56%), Gaps = 15/127 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + VA+Q+++EL+D+L + L + +G TI+ VEVS DLQ K+Y
Sbjct: 5 RAQKVAEQMKKELADILQHE-------LKDPRIG-------FVTITRVEVSGDLQHAKIY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VSV+G + KE + L A ++R ++ RR+ +R+ PE+ F DES E R+ +L
Sbjct: 51 VSVYGPEAEKEATLGVLTKAAGFIRGEIARRLHMRMAPELVFRLDESGEYSERIEHVLKS 110
Query: 189 IKAEKEA 195
+K E EA
Sbjct: 111 LK-ENEA 116
>gi|332295454|ref|YP_004437377.1| ribosome-binding factor A [Thermodesulfobium narugense DSM 14796]
gi|332178557|gb|AEE14246.1| Ribosome-binding factor A [Thermodesulfobium narugense DSM 14796]
Length = 112
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 59/86 (68%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLR 163
D + S+ +I ++++S+D + +KV+VS++GD++ KE + GL S ++++R +L RR+ L+
Sbjct: 25 DVRIKSMVSIMELDMSSDHKNIKVWVSIYGDEKSKEETMKGLVSASRFLRGELARRIGLK 84
Query: 164 LTPEIRFIEDESFERGSRVIAILDRI 189
P+I F D S ERG ++ IL +I
Sbjct: 85 YAPQILFAIDNSLERGDKIFEILKKI 110
>gi|304404294|ref|ZP_07385956.1| ribosome-binding factor A [Paenibacillus curdlanolyticus YK9]
gi|304347272|gb|EFM13104.1| ribosome-binding factor A [Paenibacillus curdlanolyticus YK9]
Length = 118
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 70/123 (56%), Gaps = 14/123 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
RV V +QI++ELS ++ T+ L + +G T++ V+V+ DL KVY
Sbjct: 5 RVGRVGEQIKKELSQIIQTE-------LKDPRIG-------FITVTGVDVTNDLSQAKVY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+SV G D KE + + ++RS+LG+RM+LR TP + F D S GSR+ A+L++
Sbjct: 51 LSVLGSDEQKEETLKAIARGTGFIRSELGKRMRLRHTPVLLFKFDASIAYGSRIEALLEQ 110
Query: 189 IKA 191
I +
Sbjct: 111 INS 113
>gi|294791741|ref|ZP_06756889.1| ribosome-binding factor A [Veillonella sp. 6_1_27]
gi|294456971|gb|EFG25333.1| ribosome-binding factor A [Veillonella sp. 6_1_27]
Length = 118
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 73/127 (57%), Gaps = 14/127 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
RV+ + + I++E+S ML+ L + +G TTI+DV V+ DL+ +Y
Sbjct: 5 RVRKLQEFIKQEVSQMLMRG-------LKDPRIG-------FTTITDVHVTGDLREATIY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VS+FG D+ KE + LK A ++R++LG+ +KLR P I F +D S + + ++L+
Sbjct: 51 VSLFGSDKEKEDTLIALKHAAGHIRTELGKVLKLRHIPSITFDKDTSLDYSMHIESLLNE 110
Query: 189 IKAEKEA 195
IK ++E
Sbjct: 111 IKKDEET 117
>gi|299823029|ref|ZP_07054915.1| ribosome-binding factor A [Listeria grayi DSM 20601]
gi|299816558|gb|EFI83796.1| ribosome-binding factor A [Listeria grayi DSM 20601]
Length = 114
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 68/121 (56%), Gaps = 20/121 (16%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R +A+Q+++EL D+L L D L F TI+DVE++ DLQ
Sbjct: 4 RANRIAEQMKKELGDILNRKLKDPRLGF-----------------VTITDVEITGDLQQA 46
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
+Y+SV G+++ +E + L+ ++RS++G R++LR PE++F D S E G+R+ +
Sbjct: 47 TIYISVLGEEKERENTLLALEKAHGFIRSEIGSRIRLRKVPELQFALDGSIEYGNRIDEL 106
Query: 186 L 186
L
Sbjct: 107 L 107
>gi|257457664|ref|ZP_05622831.1| ribosome-binding factor A [Treponema vincentii ATCC 35580]
gi|257445050|gb|EEV20126.1| ribosome-binding factor A [Treponema vincentii ATCC 35580]
Length = 125
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 72/130 (55%), Gaps = 12/130 (9%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R+ +A+QI+ E+S ++ + K+ D +S+ +I+ VEVS DL KVY
Sbjct: 5 RLDKLAEQIREEISQLIFSGKI------------KDPRVSNFLSINRVEVSGDLAYAKVY 52
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VS F D + + GL++ A ++R+ L +++ + P+ FI DES E G ++ L+
Sbjct: 53 VSSFMDAHKTKQGVRGLENAAGFIRTSLAKKLHIHQCPQFTFIYDESIEEGFNMVKKLEA 112
Query: 189 IKAEKEAAKS 198
++AE ++ +
Sbjct: 113 LEAESDSGNN 122
>gi|294142059|ref|YP_003558037.1| ribosome-binding factor A [Shewanella violacea DSS12]
gi|293328528|dbj|BAJ03259.1| ribosome-binding factor A [Shewanella violacea DSS12]
Length = 140
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 85/154 (55%), Gaps = 22/154 (14%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + +Q+Q+EL+ +L D + + +G + T++DVEVS DL KV+
Sbjct: 7 RTRRIGQQLQQELAQVLHRD-------IKDPRVG-------MVTVNDVEVSRDLSYAKVF 52
Query: 129 VSVFGDDRGKEVAIA--GLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
V+ F +D K VA+ L S A Y+RS + RMKLR+ PE+RFI D S G R+ ++
Sbjct: 53 VTFFEEDE-KIVAVKLEALSSAAGYIRSLVAGRMKLRVMPELRFIYDASLVEGMRMSNLV 111
Query: 187 DRIKAEKEAAKSKNKEQFESPDLPEDERDWEGDD 220
R+ EA K++ + D +++D +G+D
Sbjct: 112 TRVIHNDEA-----KQKQANRDEQGEDKDQQGED 140
>gi|114562169|ref|YP_749682.1| ribosome-binding factor A [Shewanella frigidimarina NCIMB 400]
gi|122300516|sp|Q086H1.1|RBFA_SHEFN RecName: Full=Ribosome-binding factor A
gi|114333462|gb|ABI70844.1| ribosome-binding factor A [Shewanella frigidimarina NCIMB 400]
Length = 143
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 81/152 (53%), Gaps = 20/152 (13%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + +A+Q+Q+EL+ +L D + + +G T++DV+VS DL KVY
Sbjct: 7 RTRRIAQQLQQELAMVLQRD-------MKDPRIG-------FVTVNDVDVSRDLSYAKVY 52
Query: 129 VSVFGDDRG-KEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
V+ F +D + I L A YVR+ + RMKLR+ PE+RFI D S G R+ ++
Sbjct: 53 VTFFEEDTELVQQKIDALTVAAPYVRTLVAGRMKLRVMPELRFIYDSSLVEGMRMSNLVT 112
Query: 188 RIKAEKEAAKSKNKEQFESPDLPEDERDWEGD 219
++ K K K+Q +PD P++ +G+
Sbjct: 113 QV-----INKDKAKQQQFTPDTPDNSESVDGE 139
>gi|431794486|ref|YP_007221391.1| ribosome-binding factor A [Desulfitobacterium dichloroeliminans LMG
P-21439]
gi|430784712|gb|AGA69995.1| ribosome-binding factor A [Desulfitobacterium dichloroeliminans LMG
P-21439]
Length = 125
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 54/85 (63%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEI 168
T++ VEV+ DL KVY+SV GD + + ++ LKS A +VRS++G+R++LR PEI
Sbjct: 31 GFVTVTSVEVADDLGSAKVYISVLGDSQAAKDSMDALKSAAGFVRSEIGKRIRLRYAPEI 90
Query: 169 RFIEDESFERGSRVIAILDRIKAEK 193
F D S E G+ + +L +K E+
Sbjct: 91 VFKYDTSIEHGAHIAQLLRGVKHEE 115
>gi|149925036|ref|ZP_01913354.1| ribosome-binding factor A [Plesiocystis pacifica SIR-1]
gi|149814100|gb|EDM73726.1| ribosome-binding factor A [Plesiocystis pacifica SIR-1]
Length = 153
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 71/123 (57%), Gaps = 10/123 (8%)
Query: 68 RRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKV 127
RR + V + ++RE++ MLL ++ + P +A+ +++ V VS DL V +
Sbjct: 3 RRRQRVEELLRREMAQMLLRGELRDPRLQPASAV----------SVTGVSVSPDLSVATI 52
Query: 128 YVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
YV V + E +A L++ +R +LG R++LR TPE+RF D+S ERG+RV AIL
Sbjct: 53 YVDVLTEALRLESVLAALRAGGGAIRRKLGERVQLRRTPELRFHHDDSIERGNRVEAILT 112
Query: 188 RIK 190
++
Sbjct: 113 ELR 115
>gi|307243339|ref|ZP_07525503.1| ribosome-binding factor A [Peptostreptococcus stomatis DSM 17678]
gi|306493286|gb|EFM65275.1| ribosome-binding factor A [Peptostreptococcus stomatis DSM 17678]
Length = 115
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 67/111 (60%), Gaps = 15/111 (13%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R+K +++++++ +S ML+ D ++S+ +++DVEV+ DL+ VY
Sbjct: 5 RIKRISEEVRKVVSSMLINGI-------------KDPRITSMISVTDVEVTNDLRYAFVY 51
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERG 179
+S+ G DR E ++ GL S Y+R ++GR++KLR PEI F D+S ERG
Sbjct: 52 ISILGGDR--EASLEGLNSARGYIRREVGRQVKLRYAPEIVFKIDDSIERG 100
>gi|256821532|ref|YP_003145495.1| ribosome-binding factor A [Kangiella koreensis DSM 16069]
gi|256795071|gb|ACV25727.1| ribosome-binding factor A [Kangiella koreensis DSM 16069]
Length = 122
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 77/132 (58%), Gaps = 16/132 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R K VA QIQR+L+ +L + + + LG + T+S VEV++DLQ KV+
Sbjct: 5 RAKRVADQIQRDLAVLLQRE-------MKDPRLG-------IVTVSGVEVTSDLQNAKVF 50
Query: 129 VSVFGDDRGKEV--AIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
V+ G D +E+ A+ L A ++RSQL + +++R P +RF+ D+S G ++ +++
Sbjct: 51 VTFLGKDEEQEIKQALEVLTGAAGFLRSQLAKSIRMRSVPSLRFLFDKSIVEGQKMTSLI 110
Query: 187 DRIKAEKEAAKS 198
D+ +E E+ KS
Sbjct: 111 DKAISEDESKKS 122
>gi|429759688|ref|ZP_19292184.1| ribosome-binding factor A [Veillonella atypica KON]
gi|429179278|gb|EKY20534.1| ribosome-binding factor A [Veillonella atypica KON]
Length = 118
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 73/127 (57%), Gaps = 14/127 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
RV+ + + I++E+S ML+ L + +G TTI+DV V+ DL+ +Y
Sbjct: 5 RVRKLQEFIKQEVSQMLM-------RALKDPRIG-------FTTITDVHVTGDLREATIY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VS+FG D+ KE + LK + +VR++LG+ +KLR P I F +D S + + ++L+
Sbjct: 51 VSLFGSDKEKEDTLIALKHASGHVRTELGKVLKLRHIPTITFDKDTSLDYSMHIESLLNE 110
Query: 189 IKAEKEA 195
IK ++E
Sbjct: 111 IKKDEET 117
>gi|312898339|ref|ZP_07757729.1| ribosome-binding factor A [Megasphaera micronuciformis F0359]
gi|310620258|gb|EFQ03828.1| ribosome-binding factor A [Megasphaera micronuciformis F0359]
Length = 115
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 69/118 (58%), Gaps = 14/118 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
RV+ + + I++E+S ++L + L + LG T++D ++ DL+ VY
Sbjct: 5 RVRKIQEFIKQEVSRIVLQE-------LKDPRLG-------FVTVTDARITGDLREATVY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
VS+FG D K+ +A L Y+RS++G+R+ +R +P+I F EDES E G ++ +IL
Sbjct: 51 VSLFGSDEEKKNTLAALSKAQGYIRSEVGKRLGIRYSPQIEFKEDESLEYGMKIESIL 108
>gi|238019438|ref|ZP_04599864.1| hypothetical protein VEIDISOL_01307 [Veillonella dispar ATCC 17748]
gi|237864137|gb|EEP65427.1| hypothetical protein VEIDISOL_01307 [Veillonella dispar ATCC 17748]
Length = 118
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 73/126 (57%), Gaps = 14/126 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
RV+ + + I++E+S ML+ L + +G TTI+DV V+ DL+ +Y
Sbjct: 5 RVRKLQEFIKQEVSQMLMRG-------LKDPRIG-------FTTITDVHVTGDLREATIY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VS+FG D+ KE + LK A ++R++LG+ +KLR P I F +D S + + ++L+
Sbjct: 51 VSLFGSDKEKEDTLIALKHAAGHIRTELGKVLKLRHIPSITFDKDTSLDYSMHIESLLNE 110
Query: 189 IKAEKE 194
IK ++E
Sbjct: 111 IKKDEE 116
>gi|168207529|ref|ZP_02633534.1| ribosome-binding factor A [Clostridium perfringens E str. JGS1987]
gi|170661132|gb|EDT13815.1| ribosome-binding factor A [Clostridium perfringens E str. JGS1987]
Length = 116
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 77/128 (60%), Gaps = 15/128 (11%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MAN R K + +++++E+SD++ D L+++ +++ VEV+ DL+
Sbjct: 1 MANFRG-KRINEEVRKEVSDIIRNQ-------------IKDPRLTAMVSVTQVEVTKDLR 46
Query: 124 VVKVYVSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
KV+VS+F +D KE ++ LKS A ++R ++G R+KLR TPEI F ED S + +
Sbjct: 47 YAKVFVSLFAKNDEEKEESLKALKSSAGFIRREVGNRVKLRSTPEILFEEDTSIDNAMYI 106
Query: 183 IAILDRIK 190
++L++IK
Sbjct: 107 ESLLNKIK 114
>gi|384135116|ref|YP_005517830.1| ribosome-binding factor A [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
gi|339289201|gb|AEJ43311.1| ribosome-binding factor A [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
Length = 118
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 69/122 (56%), Gaps = 14/122 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + VA+Q+++EL+D+L + L + +G TI+ VEVS DLQ K+Y
Sbjct: 5 RAQKVAEQMKKELADLLQHE-------LKDPRIG-------FVTITRVEVSGDLQHAKIY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VSV+G KE ++ L A ++R ++ RR+ +R+ PE+ F DES E R+ +L
Sbjct: 51 VSVYGSGAEKEATLSVLTKAAGFLRGEIARRLHMRMAPELVFRLDESGEYSERIEQVLKS 110
Query: 189 IK 190
+K
Sbjct: 111 LK 112
>gi|218290089|ref|ZP_03494251.1| ribosome-binding factor A [Alicyclobacillus acidocaldarius LAA1]
gi|218239798|gb|EED06987.1| ribosome-binding factor A [Alicyclobacillus acidocaldarius LAA1]
Length = 118
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 72/127 (56%), Gaps = 15/127 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + VA+Q+++EL+D+L + L + +G TI+ VEVS DLQ KVY
Sbjct: 5 RAQKVAEQMKKELADILQHE-------LKDPRIG-------FVTITRVEVSGDLQHAKVY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VSV+G + KE + L A ++R ++ RR+ +R+ PE+ F DES E R+ +L
Sbjct: 51 VSVYGPEVEKEATLGVLTKAAGFIRGEIARRLHMRIAPELVFRLDESGEYSERIEQVLKS 110
Query: 189 IKAEKEA 195
+K E EA
Sbjct: 111 LK-ENEA 116
>gi|407716835|ref|YP_006838115.1| ribosome-binding factor A [Cycloclasticus sp. P1]
gi|407257171|gb|AFT67612.1| Ribosome-binding factor A [Cycloclasticus sp. P1]
Length = 121
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 70/120 (58%), Gaps = 16/120 (13%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + V++Q+QREL++++ D L + +G T+SDVEV+ DL V KV+
Sbjct: 7 RFQRVSRQLQRELAEIIQRD-------LRDPDVG-------FVTVSDVEVTKDLAVAKVF 52
Query: 129 VSVFGDDRG--KEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
VSV K+ ++A L + Y+ + +RM++R+ PE+RF DES E+G ++ A+L
Sbjct: 53 VSVLTTQEAEDKQSSVAALNRASNYIHGIVSKRMRMRMVPELRFFLDESIEQGIKMDALL 112
>gi|282848831|ref|ZP_06258224.1| ribosome-binding factor A [Veillonella parvula ATCC 17745]
gi|294793602|ref|ZP_06758739.1| ribosome-binding factor A [Veillonella sp. 3_1_44]
gi|416998684|ref|ZP_11939353.1| ribosome-binding factor A [Veillonella parvula ACS-068-V-Sch12]
gi|282581485|gb|EFB86875.1| ribosome-binding factor A [Veillonella parvula ATCC 17745]
gi|294455172|gb|EFG23544.1| ribosome-binding factor A [Veillonella sp. 3_1_44]
gi|333976837|gb|EGL77696.1| ribosome-binding factor A [Veillonella parvula ACS-068-V-Sch12]
Length = 118
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 73/126 (57%), Gaps = 14/126 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
RV+ + + I++E+S ML+ L + +G TTI+DV V+ DL+ +Y
Sbjct: 5 RVRKLQEFIKQEVSQMLMRG-------LKDPRIG-------FTTITDVHVTGDLREATIY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VS+FG D+ KE + LK A ++R++LG+ +KLR P I F +D S + + ++L+
Sbjct: 51 VSLFGSDKEKEDTLIALKHAAGHIRTELGKVLKLRHIPSITFDKDTSLDYSMHIESLLNE 110
Query: 189 IKAEKE 194
IK ++E
Sbjct: 111 IKKDEE 116
>gi|220934180|ref|YP_002513079.1| ribosome-binding factor A [Thioalkalivibrio sulfidophilus HL-EbGr7]
gi|254789772|sp|B8GP03.1|RBFA_THISH RecName: Full=Ribosome-binding factor A
gi|219995490|gb|ACL72092.1| ribosome-binding factor A [Thioalkalivibrio sulfidophilus HL-EbGr7]
Length = 129
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 74/134 (55%), Gaps = 14/134 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + V QIQREL++++ + L + +G + T++ VEVS DL KV+
Sbjct: 7 RTERVGDQIQRELAELIRME-------LKDPRVG-------MVTLAGVEVSRDLAHAKVW 52
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+V G ++ GL+ A ++R +LGRRM+LR P + F D++ E+G+R+ A++D+
Sbjct: 53 FTVLGSEQQIADTTEGLQRAAGFLRRELGRRMRLRTVPHLHFQYDDTQEKGARLSALIDK 112
Query: 189 IKAEKEAAKSKNKE 202
AE A + E
Sbjct: 113 AVAEDRAQHPDDDE 126
>gi|336427127|ref|ZP_08607131.1| ribosome-binding factor A [Lachnospiraceae bacterium 3_1_57FAA_CT1]
gi|336009980|gb|EGN39967.1| ribosome-binding factor A [Lachnospiraceae bacterium 3_1_57FAA_CT1]
Length = 129
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 65/105 (61%), Gaps = 2/105 (1%)
Query: 95 VLPEAALG--ADRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYV 152
VL E G D ++ LT++ VEVS DL+ K ++SV GD+ ++ +AGL+S + ++
Sbjct: 18 VLAETIRGEIKDPRIAPLTSVVAVEVSPDLKTCKAWISVLGDEAAQKETMAGLRSASGFI 77
Query: 153 RSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRIKAEKEAAK 197
+S+L + + LR+TPE++FI D+S G + +D + ++ A+
Sbjct: 78 KSRLAKEINLRITPEVQFIMDQSIAYGVNMSHKIDEVMGSQDMAR 122
>gi|210622614|ref|ZP_03293274.1| hypothetical protein CLOHIR_01222 [Clostridium hiranonis DSM 13275]
gi|210154115|gb|EEA85121.1| hypothetical protein CLOHIR_01222 [Clostridium hiranonis DSM 13275]
Length = 127
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 84/142 (59%), Gaps = 16/142 (11%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
M + R + ++++I++ + ML+ D ++S+ +++DV+V+ DL+
Sbjct: 1 MTSYNRTRRISEEIKKIIGQMLINGI-------------KDPRITSMISVTDVDVTNDLR 47
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
VYVS+ G + +E ++AGLKS A Y+R ++G+++KLR PEI F D+S ERG +
Sbjct: 48 YAFVYVSLLGGN--EEESLAGLKSAAGYIRREVGKKVKLRYIPEIMFKVDDSIERGMYMD 105
Query: 184 AILDRIKAEKEAAKSKNKEQFE 205
+++ +++ E + SK E+ E
Sbjct: 106 SLIKKVQ-EHDMENSKEVEEDE 126
>gi|51892661|ref|YP_075352.1| ribosome-binding factor A [Symbiobacterium thermophilum IAM 14863]
gi|61214894|sp|Q67P85.1|RBFA_SYMTH RecName: Full=Ribosome-binding factor A
gi|51856350|dbj|BAD40508.1| ribosome-binding factor A [Symbiobacterium thermophilum IAM 14863]
Length = 125
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 73/125 (58%), Gaps = 15/125 (12%)
Query: 65 ANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQV 124
N R ++ V +Q++ EL+ LL D+V + +G +I VEVS D++
Sbjct: 3 GNARAIR-VGEQMREELAQ-LLRDEV------KDPRIG-------FVSIVKVEVSRDIRH 47
Query: 125 VKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIA 184
K+YVSV G+D+ K+ +AGL S ++RS+L +R++LR PE+ F DES E G R+
Sbjct: 48 AKIYVSVLGNDQQKKETMAGLASATGFLRSELAKRLQLRYMPELHFALDESIEHGQRIAQ 107
Query: 185 ILDRI 189
+L ++
Sbjct: 108 LLVQV 112
>gi|317133691|ref|YP_004093005.1| ribosome-binding factor A [Ethanoligenens harbinense YUAN-3]
gi|315471670|gb|ADU28274.1| ribosome-binding factor A [Ethanoligenens harbinense YUAN-3]
Length = 118
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 68/126 (53%), Gaps = 16/126 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R+ + + I+RELSD++ K D +S L +I V+VS DL KVY
Sbjct: 5 RLDRLTEDIKRELSDIVRGLK--------------DPRISGLVSIVRVDVSNDLSYAKVY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VS G D + A+ GLKS A + R L R+ +R TPE+RF+ D+S E + + +L
Sbjct: 51 VSAVGGDTAQ--AVEGLKSAAGFARKTLSARLHVRKTPELRFVADDSMEHSAHIAHLLQD 108
Query: 189 IKAEKE 194
IK ++E
Sbjct: 109 IKKDEE 114
>gi|220931629|ref|YP_002508537.1| ribosome-binding factor A [Halothermothrix orenii H 168]
gi|254789753|sp|B8CW73.1|RBFA_HALOH RecName: Full=Ribosome-binding factor A
gi|219992939|gb|ACL69542.1| ribosome-binding factor A [Halothermothrix orenii H 168]
Length = 122
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 75/123 (60%), Gaps = 14/123 (11%)
Query: 68 RRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKV 127
+R + + + +++E+SD++L + + + +G +++DVEVS DL+ KV
Sbjct: 4 QRARRLGELLKKEISDIILRE-------VKDPRIG-------FISVTDVEVSNDLRHAKV 49
Query: 128 YVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
+VSV+GD++ ++ + GL+ Y+R +G R+K+ TPEI F D+S E G+R+ +L
Sbjct: 50 FVSVYGDEKERKETMEGLEKATGYIRKLIGERVKVYYTPEILFRYDDSLEHGARINELLK 109
Query: 188 RIK 190
++K
Sbjct: 110 KVK 112
>gi|332653583|ref|ZP_08419328.1| ribosome-binding factor A [Ruminococcaceae bacterium D16]
gi|332518729|gb|EGJ48332.1| ribosome-binding factor A [Ruminococcaceae bacterium D16]
Length = 130
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 69/118 (58%), Gaps = 15/118 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R+ + ++IQRELS ++ T K D ++ + +++ VE + DL+ KV+
Sbjct: 5 RIGRINEEIQRELSSLIPTVK--------------DPRVTGMISVTAVETTPDLKYAKVH 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
+SV D + + GLKS Y+R +LGR + LR TP++ F+ D+S ++G+ ++++L
Sbjct: 51 ISVL-DKSNEAQVLKGLKSAGGYLRRELGRTLNLRNTPQLSFVPDDSIDKGAHILSML 107
>gi|399888403|ref|ZP_10774280.1| ribosome-binding factor A [Clostridium arbusti SL206]
Length = 120
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 59/91 (64%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLR 163
D L++L +++ V+V+ DL+ KV+VS+ GDD K +++ LK A ++R ++G ++ LR
Sbjct: 27 DPRLNTLISVTKVDVTKDLRYAKVFVSILGDDNAKNESLSILKKSAGFIRREVGHQVSLR 86
Query: 164 LTPEIRFIEDESFERGSRVIAILDRIKAEKE 194
LTPEI D S E G + +IL +IK K+
Sbjct: 87 LTPEIIIELDNSIEHGMHIDSILQKIKETKK 117
>gi|319892288|ref|YP_004149163.1| ribosome-binding factor A [Staphylococcus pseudintermedius
HKU10-03]
gi|386319444|ref|YP_006015607.1| ribosome-binding factor A [Staphylococcus pseudintermedius ED99]
gi|317161984|gb|ADV05527.1| Ribosome-binding factor A [Staphylococcus pseudintermedius
HKU10-03]
gi|323464615|gb|ADX76768.1| ribosome-binding factor A [Staphylococcus pseudintermedius ED99]
Length = 114
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 70/114 (61%), Gaps = 14/114 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + V +Q+++EL D ++ +K L + +G TI+DV+ + DL + KVY
Sbjct: 4 RAERVGEQMKKELMD-IINNK------LKDPRVG-------FLTITDVQPTNDLSLAKVY 49
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
++V G D+ +E GL+ +++S++G+RM+LR+ P+++F DES E G+R+
Sbjct: 50 LTVLGSDKERENTFKGLEKAKGFIKSEIGQRMRLRIVPDLQFEYDESIEYGNRI 103
>gi|164688517|ref|ZP_02212545.1| hypothetical protein CLOBAR_02162 [Clostridium bartlettii DSM
16795]
gi|164602930|gb|EDQ96395.1| ribosome-binding factor A [Clostridium bartlettii DSM 16795]
Length = 127
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 80/142 (56%), Gaps = 15/142 (10%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA+ R + +A++I++ +S ML+ D ++SL +++DVEV++DL
Sbjct: 1 MASNNRTRRIAEEIRKIVSTMLINGI-------------KDPRINSLVSVTDVEVTSDLS 47
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
+YVS+ G D +E + GLKS Y+R ++G+ +K+R TPEI F D+S +G +
Sbjct: 48 YAYIYVSILGGD--EESTLDGLKSACGYIRREVGKNIKIRHTPEIIFKIDDSLLKGMYMD 105
Query: 184 AILDRIKAEKEAAKSKNKEQFE 205
++ ++ + + +N++ E
Sbjct: 106 ELIKKVNNGYKDSSEENEKDGE 127
>gi|331269627|ref|YP_004396119.1| ribosome-binding factor A [Clostridium botulinum BKT015925]
gi|329126177|gb|AEB76122.1| ribosome-binding factor A [Clostridium botulinum BKT015925]
Length = 121
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 72/126 (57%), Gaps = 13/126 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R+ + +++++E+S+++ D D L+++ +I+ VEV+ DL+ KV+
Sbjct: 5 RLGRINEEVRKEISNIIRDDI-------------HDPRLTAMVSITRVEVTNDLRYAKVF 51
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+SVFG + K+ + LKS ++R ++G R+KLR TPEI DES E G + +L
Sbjct: 52 ISVFGSESSKKETLEALKSSVGFMRREVGHRVKLRCTPEIILELDESIEHGMHINDLLSN 111
Query: 189 IKAEKE 194
+K K+
Sbjct: 112 LKGNKK 117
>gi|381183637|ref|ZP_09892356.1| ribosome-binding factor A [Listeriaceae bacterium TTU M1-001]
gi|380316470|gb|EIA19870.1| ribosome-binding factor A [Listeriaceae bacterium TTU M1-001]
Length = 114
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 67/121 (55%), Gaps = 20/121 (16%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R VA+Q+++EL D+L L D L F TI+DVEV+ DLQ
Sbjct: 4 RSNRVAEQMKKELGDILNRKLKDPRLGF-----------------ITITDVEVTGDLQQA 46
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
+++S+ G+++ +E + L+ ++RS++G RM+LR PE+ F D S E G+R+ +
Sbjct: 47 TIFISILGNEKEREDTLLALEKAHGFIRSEIGNRMRLRKVPELLFEMDSSLEYGNRIDEL 106
Query: 186 L 186
L
Sbjct: 107 L 107
>gi|90581548|ref|ZP_01237341.1| ribosome-binding factor A [Photobacterium angustum S14]
gi|90437310|gb|EAS62508.1| ribosome-binding factor A [Vibrio angustum S14]
Length = 132
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 71/115 (61%), Gaps = 15/115 (13%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + VA+Q+Q+EL+ +L + L E L ++TTIS V+VS D+ KVY
Sbjct: 7 RTQRVAQQLQKELALILQRE-------LKEPRL-------AMTTISSVDVSRDMGYAKVY 52
Query: 129 VSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
++ D+ +E ++A L+ KA Y+RS LG++++LR+TPE+ FI D+S G R+
Sbjct: 53 ITFLTIGDQTEEESLAILREKAPYIRSLLGKQIRLRVTPELNFIFDQSLTEGMRI 107
>gi|406973173|gb|EKD96713.1| ribosome-binding factor A [uncultured bacterium]
Length = 126
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 76/141 (53%), Gaps = 18/141 (12%)
Query: 62 KCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSAD 121
K + PRRV A+QIQR+L+++L T+ L + +G + T++DVEV+ D
Sbjct: 3 KDHSRPRRV---AEQIQRDLAELLQTE-------LKDPRVG-------MVTLTDVEVTPD 45
Query: 122 LQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSR 181
KVY ++ E + GL A ++R+QL RM+LR+ P++ F+ D S ERG +
Sbjct: 46 YAHAKVYFTLLNQGHSLEETLVGLNRAAGFLRTQLAHRMRLRIVPQLHFVFDSSVERGVQ 105
Query: 182 VIAILDRIKAEKEAAKSKNKE 202
+ +++ +E K +E
Sbjct: 106 LSHLIEE-AVSQEGGKQDMEE 125
>gi|326692684|ref|ZP_08229689.1| ribosome-binding factor A [Leuconostoc argentinum KCTC 3773]
gi|339450768|ref|ZP_08654138.1| ribosome-binding factor A [Leuconostoc lactis KCTC 3528]
Length = 117
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 78/132 (59%), Gaps = 17/132 (12%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MANP+R +A++IQR+++D+LL K + + + T++ VE+S DLQ
Sbjct: 1 MANPQRAGRLAQEIQRDVTDLLL--KRINDPRVKD------------VTVTSVELSGDLQ 46
Query: 124 VVKVYVSVFGD--DRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSR 181
+ +Y S+ D G++ A AGL++ + +R +LG R+ + TPE+RF+ D+S + G+
Sbjct: 47 IATIYYSILSDLASDGQK-AQAGLEAASGLIRKELGARLTVYKTPELRFVRDQSVQYGNH 105
Query: 182 VIAILDRIKAEK 193
+ ++ ++ AE
Sbjct: 106 IEDLIRKLHAEN 117
>gi|385799869|ref|YP_005836273.1| ribosome-binding factor A [Halanaerobium praevalens DSM 2228]
gi|309389233|gb|ADO77113.1| ribosome-binding factor A [Halanaerobium praevalens DSM 2228]
Length = 127
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 76/135 (56%), Gaps = 15/135 (11%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
M+N R V+ V + ++ E+S ++L + + + +G +I+DVEVS DL+
Sbjct: 1 MSNKRAVR-VGELLKEEISQIVLRE-------MKDPRIG-------FVSITDVEVSGDLR 45
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
KV++SV+G ++ KE +AGL+ +VR +G R+K+ TPEI F D+S E G +
Sbjct: 46 HAKVFISVYGTEKEKEETLAGLQQAQGFVRKLVGERVKIHHTPEIIFRYDDSIENGVHIS 105
Query: 184 AILDRIKAEKEAAKS 198
I+ +K E +S
Sbjct: 106 NIIKDLKQSGEIKES 120
>gi|89895262|ref|YP_518749.1| ribosome-binding factor A [Desulfitobacterium hafniense Y51]
gi|219669693|ref|YP_002460128.1| ribosome-binding factor A [Desulfitobacterium hafniense DCB-2]
gi|122482377|sp|Q24UI7.1|RBFA_DESHY RecName: Full=Ribosome-binding factor A
gi|254789746|sp|B8FR05.1|RBFA_DESHD RecName: Full=Ribosome-binding factor A
gi|89334710|dbj|BAE84305.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219539953|gb|ACL21692.1| ribosome-binding factor A [Desulfitobacterium hafniense DCB-2]
Length = 125
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 59/95 (62%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEI 168
T++ VEV+ DL KVYVSV GD + + ++ LK A +VRS++G+R++LR PEI
Sbjct: 31 GFVTVTSVEVADDLGNAKVYVSVLGDSQQAKDSLDALKRAAGFVRSEIGKRVRLRHAPEI 90
Query: 169 RFIEDESFERGSRVIAILDRIKAEKEAAKSKNKEQ 203
F D S E G+ + +L +K E+E + ++ +Q
Sbjct: 91 VFKYDTSIEHGAHIAQLLRGVKQEEEKDEGESHDQ 125
>gi|312963082|ref|ZP_07777567.1| Ribosome-binding factor A [Pseudomonas fluorescens WH6]
gi|387895654|ref|YP_006325951.1| ribosome-binding factor A [Pseudomonas fluorescens A506]
gi|388468987|ref|ZP_10143197.1| ribosome-binding factor A [Pseudomonas synxantha BG33R]
gi|423693603|ref|ZP_17668123.1| ribosome-binding factor A [Pseudomonas fluorescens SS101]
gi|440739549|ref|ZP_20919060.1| ribosome-binding factor A [Pseudomonas fluorescens BRIP34879]
gi|447918354|ref|YP_007398922.1| ribosome-binding factor A [Pseudomonas poae RE*1-1-14]
gi|311282593|gb|EFQ61189.1| Ribosome-binding factor A [Pseudomonas fluorescens WH6]
gi|387162990|gb|AFJ58189.1| ribosome-binding factor A [Pseudomonas fluorescens A506]
gi|387997910|gb|EIK59239.1| ribosome-binding factor A [Pseudomonas fluorescens SS101]
gi|388012567|gb|EIK73754.1| ribosome-binding factor A [Pseudomonas synxantha BG33R]
gi|440379381|gb|ELQ15977.1| ribosome-binding factor A [Pseudomonas fluorescens BRIP34879]
gi|445202217|gb|AGE27426.1| ribosome-binding factor A [Pseudomonas poae RE*1-1-14]
Length = 131
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 78/149 (52%), Gaps = 26/149 (17%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + +G L TI+ VEVS D+ K++
Sbjct: 7 RTQRIGDQMQRELAQLIRRE-------VKDPRVG-------LVTITAVEVSRDVGHAKIF 52
Query: 129 VSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G D +E+A I L S A ++R QL R MKLR P++ F DES RG+ + A++
Sbjct: 53 ITVMGQDNSEEIAQSIKVLNSAAGFLRMQLAREMKLRSVPQLHFHYDESVVRGAHLSALI 112
Query: 187 DRIKAEKEAAKSKNKEQFESPDLPEDERD 215
+R AE + P PED ++
Sbjct: 113 ERAVAEDS----------QHPSTPEDAKE 131
>gi|269797848|ref|YP_003311748.1| ribosome-binding factor A [Veillonella parvula DSM 2008]
gi|269094477|gb|ACZ24468.1| ribosome-binding factor A [Veillonella parvula DSM 2008]
Length = 118
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 73/127 (57%), Gaps = 14/127 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
RV+ + + I++E+S ML+ L + +G TTI+DV V+ DL+ +Y
Sbjct: 5 RVRKLQEFIKQEVSQMLMRG-------LKDPRIG-------FTTITDVHVTGDLREATIY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VS+FG D+ K+ + LK A ++R++LG+ +KLR P I F +D S + + ++L+
Sbjct: 51 VSLFGSDKEKQDTLIALKHAAGHIRTELGKVLKLRHIPSITFDKDTSLDYSMHIESLLNE 110
Query: 189 IKAEKEA 195
IK ++E
Sbjct: 111 IKKDEET 117
>gi|423072427|ref|ZP_17061181.1| ribosome-binding factor A [Desulfitobacterium hafniense DP7]
gi|361856859|gb|EHL08735.1| ribosome-binding factor A [Desulfitobacterium hafniense DP7]
Length = 130
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 59/95 (62%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEI 168
T++ VEV+ DL KVY+SV GD + + ++ LK A +VRS++G+R++LR PEI
Sbjct: 36 GFVTVTSVEVADDLGNAKVYISVLGDSQQAKDSLDALKRAAGFVRSEIGKRVRLRHAPEI 95
Query: 169 RFIEDESFERGSRVIAILDRIKAEKEAAKSKNKEQ 203
F D S E G+ + +L +K E+E + ++ +Q
Sbjct: 96 VFKYDTSIEHGAHIAQLLRGVKQEEEKDEGESHDQ 130
>gi|167625058|ref|YP_001675352.1| ribosome-binding factor A [Shewanella halifaxensis HAW-EB4]
gi|189039560|sp|B0TQA1.1|RBFA_SHEHH RecName: Full=Ribosome-binding factor A
gi|167355080|gb|ABZ77693.1| ribosome-binding factor A [Shewanella halifaxensis HAW-EB4]
Length = 142
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 63/112 (56%), Gaps = 4/112 (3%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDD-RGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPE 167
T++DV+VS DL KVYV+ F +D + E +A L + A Y+RS + RMKLR+ PE
Sbjct: 33 GFVTVNDVDVSRDLSYAKVYVTFFEEDEKLVEQKVAALDAAAGYIRSLVAGRMKLRVMPE 92
Query: 168 IRFIEDESFERGSRVIAILDRIKAEKEAAKSKNKEQFESPDLPEDERDWEGD 219
+RFI D S G R+ ++ R+ + EA K K+ D + E EGD
Sbjct: 93 LRFIYDSSLVEGMRMSNLVSRVISNDEA---KQKQHGVETDAEQGETKDEGD 141
>gi|303232067|ref|ZP_07318770.1| ribosome-binding factor A [Veillonella atypica ACS-049-V-Sch6]
gi|302513173|gb|EFL55212.1| ribosome-binding factor A [Veillonella atypica ACS-049-V-Sch6]
Length = 118
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 73/127 (57%), Gaps = 14/127 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
RV+ + + I++E+S ML+ L + +G TT++DV V+ DL+ +Y
Sbjct: 5 RVRKLQEFIKQEVSQMLMRG-------LKDPRIG-------FTTVTDVHVTGDLREATIY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VS+FG D+ KE + LK + +VR++LG+ +KLR P I F +D S + + ++L+
Sbjct: 51 VSLFGSDKEKEDTLIALKHASGHVRTELGKVLKLRHIPTITFDKDSSLDYSMHIESLLNE 110
Query: 189 IKAEKEA 195
IK ++E
Sbjct: 111 IKKDEET 117
>gi|158320561|ref|YP_001513068.1| ribosome-binding factor A [Alkaliphilus oremlandii OhILAs]
gi|166918672|sp|A8MFA9.1|RBFA_ALKOO RecName: Full=Ribosome-binding factor A
gi|158140760|gb|ABW19072.1| ribosome-binding factor A [Alkaliphilus oremlandii OhILAs]
Length = 132
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 86/160 (53%), Gaps = 28/160 (17%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
M+ PR VK ++++I++ +SD + + D +SS+T+I +V+V+ DL+
Sbjct: 1 MSYPR-VKRLSEEIKKIVSDSIRNEL-------------RDPRISSMTSIVEVDVTRDLR 46
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
V +YVSV G+++ K + GL + ++R ++G+++K R TPE+ F DES E+G +
Sbjct: 47 YVNIYVSVLGNEKEKADTMEGLTKASGFIRREIGKKIKARYTPEVIFKLDESIEKGIYMY 106
Query: 184 AILDRIKAEKEAAKSKNKEQFESPDLPEDERDWEGDDPDE 223
++ ++ E L ED+ + DD DE
Sbjct: 107 NVITKVNEENH--------------LSEDDSNDTEDDSDE 132
>gi|289163638|ref|YP_003453776.1| ribosome-binding factor A [Legionella longbeachae NSW150]
gi|288856811|emb|CBJ10622.1| Ribosome-binding factor A [Legionella longbeachae NSW150]
Length = 121
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 69/124 (55%), Gaps = 15/124 (12%)
Query: 66 NPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
N +R VA+ IQR+L+ ++P+ D L+ TIS V+V+ADL
Sbjct: 4 NFKRTDRVAEMIQRKLAQ-----------IIPKEV--KDPRLTGFVTISAVKVAADLGHA 50
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
KVY +V DDR E+ + L + + Y+RS L R + LR P++ F+ DES E G R+ +
Sbjct: 51 KVYFTVLNDDR--EMVASILNAASSYLRSVLARSITLRTVPQLHFVYDESIEYGQRLSRL 108
Query: 186 LDRI 189
+D++
Sbjct: 109 IDKV 112
>gi|334134190|ref|ZP_08507702.1| ribosome-binding factor A [Paenibacillus sp. HGF7]
gi|333608272|gb|EGL19574.1| ribosome-binding factor A [Paenibacillus sp. HGF7]
Length = 118
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 72/127 (56%), Gaps = 14/127 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
RV V +Q+++E+S +L ++ + + +G T++ V+V+ DL KVY
Sbjct: 5 RVGRVGEQVKKEISQILQSE-------IKDPRIG-------FLTVTGVDVTNDLSQAKVY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+SV G D KE + L S + Y+RS+LG+R++LR PE+ F D S + GSR+ ++L
Sbjct: 51 LSVLGTDEQKEGTLKALSSASGYIRSELGKRIRLRKVPELIFKFDTSIDYGSRIESLLHD 110
Query: 189 IKAEKEA 195
+ K A
Sbjct: 111 LNDGKSA 117
>gi|330447376|ref|ZP_08311025.1| ribosome-binding factor A [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328491567|dbj|GAA05522.1| ribosome-binding factor A [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 132
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 71/115 (61%), Gaps = 15/115 (13%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + VA+Q+Q+EL+ +L + L E L ++TTIS V+VS D+ KVY
Sbjct: 7 RTQRVAQQLQKELALILQRE-------LKEPRL-------AMTTISSVDVSRDMGYAKVY 52
Query: 129 VSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
++ D+ +E ++A L+ KA Y+RS LG++++LR+TPE+ FI D+S G R+
Sbjct: 53 ITFLTIGDQTEEESLAILREKAPYIRSLLGKQIRLRVTPELNFIFDQSLTEGMRI 107
>gi|358067661|ref|ZP_09154138.1| hypothetical protein HMPREF9333_01019 [Johnsonella ignava ATCC
51276]
gi|356694140|gb|EHI55804.1| hypothetical protein HMPREF9333_01019 [Johnsonella ignava ATCC
51276]
Length = 152
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 64/117 (54%), Gaps = 13/117 (11%)
Query: 73 VAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVF 132
+ ++ RE++D++ D D + +T ++ EV+ DL+ KVY+SV
Sbjct: 11 INSEVHREIADIIRADI-------------KDPRIKPMTIVTGAEVTNDLKYCKVYISVL 57
Query: 133 GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRI 189
G++ I GLKS A ++RS L ++ LR TPE+RF+ D S E G ++ ++D +
Sbjct: 58 GNEDEARETIEGLKSAAGFIRSLLASKLNLRNTPELRFVLDNSLEYGMKISRLIDEV 114
>gi|255658257|ref|ZP_05403666.1| ribosome-binding factor A [Mitsuokella multacida DSM 20544]
gi|260849568|gb|EEX69575.1| ribosome-binding factor A [Mitsuokella multacida DSM 20544]
Length = 131
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 79/130 (60%), Gaps = 14/130 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
RV+ V + +++E+S+++L + L + +G T++ VE + DL+ K+Y
Sbjct: 5 RVEKVQELMKQEISEIILRE-------LKDPRIG-------FVTVTSVECTGDLREAKIY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VS+ G ++ + AGL+S ++R ++G+R++LR TPE+ F+ D+S + + + +L +
Sbjct: 51 VSLMGSEQQVKDCWAGLQSSLGFIRREIGKRIRLRFTPELSFVVDKSLDYSAHIQELLLK 110
Query: 189 IKAEKEAAKS 198
I+AE +A K+
Sbjct: 111 IEAEDKAKKA 120
>gi|336310478|ref|ZP_08565450.1| ribosome-binding factor A [Shewanella sp. HN-41]
gi|335866208|gb|EGM71199.1| ribosome-binding factor A [Shewanella sp. HN-41]
Length = 147
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 85/157 (54%), Gaps = 21/157 (13%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + +A+Q+Q+EL+ +L D + + +G T++DV+VS DL KV+
Sbjct: 7 RTRRIAQQLQQELALVLQRD-------MKDPRIG-------FVTVNDVDVSRDLSYAKVF 52
Query: 129 VSVFGDDRGKEVA---IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
V+ F +D KEV + L S A Y+R+ + RMKLR+ PE+RF+ D S G R+ +
Sbjct: 53 VTFFEED--KEVVQEKLNALISAAPYIRTLVAGRMKLRVMPELRFVYDSSLVEGMRMSNL 110
Query: 186 LDRIKAEKEAAKSK--NKEQFESPDLPEDERDWEGDD 220
+ ++ + +A + + + E + D +D D EG D
Sbjct: 111 VSQVINQDKAKQQQFGSAEDVQDVDATDDTEDTEGKD 147
>gi|303229587|ref|ZP_07316375.1| ribosome-binding factor A [Veillonella atypica ACS-134-V-Col7a]
gi|401680001|ref|ZP_10811925.1| ribosome-binding factor A [Veillonella sp. ACP1]
gi|302515712|gb|EFL57666.1| ribosome-binding factor A [Veillonella atypica ACS-134-V-Col7a]
gi|400219128|gb|EJO49999.1| ribosome-binding factor A [Veillonella sp. ACP1]
Length = 118
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 73/127 (57%), Gaps = 14/127 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
RV+ + + I++E+S ML+ L + +G TT++DV V+ DL+ +Y
Sbjct: 5 RVRKLQEFIKQEVSQMLMRG-------LKDPRIG-------FTTVTDVHVTGDLREATIY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VS+FG D+ KE + LK + +VR++LG+ +KLR P I F +D S + + ++L+
Sbjct: 51 VSLFGSDKEKEDTLIALKHASGHVRTELGKVLKLRHIPTITFDKDTSLDYSMHIESLLNE 110
Query: 189 IKAEKEA 195
IK ++E
Sbjct: 111 IKKDEET 117
>gi|167758069|ref|ZP_02430196.1| hypothetical protein CLOSCI_00407 [Clostridium scindens ATCC 35704]
gi|336421567|ref|ZP_08601724.1| ribosome-binding factor A [Lachnospiraceae bacterium 5_1_57FAA]
gi|167663966|gb|EDS08096.1| ribosome-binding factor A [Clostridium scindens ATCC 35704]
gi|336000451|gb|EGN30601.1| ribosome-binding factor A [Lachnospiraceae bacterium 5_1_57FAA]
Length = 127
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 65/117 (55%), Gaps = 13/117 (11%)
Query: 73 VAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVF 132
V+ ++QRELS+ +++ + D ++ T++ EV+ DL+ K Y+SV
Sbjct: 11 VSTEVQRELSN------IIRGGI-------KDPRVAPWTSVVTAEVAPDLKTCKAYISVL 57
Query: 133 GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRI 189
GD +E I GL+S Y+R +L R + LR TPEIRF+ D+S E G + +D +
Sbjct: 58 GDAHEQEETIKGLQSAEGYIRRELARTLNLRNTPEIRFVLDQSIEYGVNMSKKIDEV 114
>gi|379007614|ref|YP_005257065.1| ribosome-binding factor A [Sulfobacillus acidophilus DSM 10332]
gi|361053876|gb|AEW05393.1| ribosome-binding factor A [Sulfobacillus acidophilus DSM 10332]
Length = 121
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 64/111 (57%), Gaps = 14/111 (12%)
Query: 66 NPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
N R K VA+ +QREL +MLLT+ + + +G +I+ VEV+ DLQ
Sbjct: 2 NQTRAKRVAQLMQRELGEMLLTE-------IKDPRVG-------FVSITHVEVTRDLQQA 47
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESF 176
K++VS+ G + ++ GLKS +++R ++ RR+ LR+ PE+ FI D S
Sbjct: 48 KIFVSIMGTPEEVKASLEGLKSAQRFLRGEVSRRLGLRMAPELVFIVDSSI 98
>gi|285017809|ref|YP_003375520.1| ribosome-binding factor a protein [Xanthomonas albilineans GPE
PC73]
gi|283473027|emb|CBA15532.1| probable ribosome-binding factor a protein [Xanthomonas albilineans
GPE PC73]
Length = 136
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 78/144 (54%), Gaps = 15/144 (10%)
Query: 68 RRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKV 127
RR VA QI+R+L ++ AV D L S++ +SDVEV+ D+ KV
Sbjct: 7 RRTDRVAAQIRRDLG------TIVHAAV-------RDHGLPSVS-VSDVEVTRDMAHAKV 52
Query: 128 YVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
+V+ +R E A+ GLK A +R++L R MKLR PE+ F D+S +RG R+ +L
Sbjct: 53 FVTALMPERSSE-AVKGLKELAPQLRTELARAMKLRHVPELHFHYDDSVDRGERIDTLLR 111
Query: 188 RIKAEKEAAKSKNKEQFESPDLPE 211
+ + +++ + ++PD P+
Sbjct: 112 DMPELQSGVEAEGSDATDAPDSPK 135
>gi|298242765|ref|ZP_06966572.1| ribosome-binding factor A [Ktedonobacter racemifer DSM 44963]
gi|297555819|gb|EFH89683.1| ribosome-binding factor A [Ktedonobacter racemifer DSM 44963]
Length = 128
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 76/144 (52%), Gaps = 22/144 (15%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLT---DKVLQFAVLPEAALGADRYLSSLTTISDVEVSA 120
MANP R + + + I ELS+++ T D + FA +I+ VEVS
Sbjct: 1 MANPHRQEKLGELIAAELSELMRTRVKDPRVGFA-----------------SITHVEVSG 43
Query: 121 DLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGS 180
DL+ KV VSV G + + + GLK+ + ++R +L R+ LR P++ F D S G+
Sbjct: 44 DLRHAKVMVSVMGTEEEQAATMQGLKNASGFLRHELAERITLRYMPDLVFKLDHSIAEGA 103
Query: 181 RVIAILDRIKAE--KEAAKSKNKE 202
R++A+++++ E + S N+E
Sbjct: 104 RILALINKVNQEDSSQPTSSTNEE 127
>gi|365157182|ref|ZP_09353463.1| ribosome-binding factor A [Bacillus smithii 7_3_47FAA]
gi|363625916|gb|EHL76927.1| ribosome-binding factor A [Bacillus smithii 7_3_47FAA]
Length = 119
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 72/126 (57%), Gaps = 20/126 (15%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R V +Q+++ELSD++ + D + F T++DV+++ DLQ
Sbjct: 4 RANRVGEQMKKELSDIIGRKIKDPRIGFV-----------------TVTDVQLTGDLQQA 46
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
KV++SV GD++ K+ + L ++RS++G+R++LR TP++ F DES + G+R+ +
Sbjct: 47 KVFISVLGDEKQKKDTLKALAKAKGFIRSEIGQRIRLRKTPDLLFEFDESIDYGNRIETL 106
Query: 186 LDRIKA 191
L I +
Sbjct: 107 LKEISS 112
>gi|388455153|ref|ZP_10137448.1| ribosome-binding factor A [Fluoribacter dumoffii Tex-KL]
Length = 123
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 67/124 (54%), Gaps = 15/124 (12%)
Query: 66 NPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
N +R VA+ IQR+L+ ++P+ D L+ TIS V+V+ADL
Sbjct: 4 NFKRTDRVAEMIQRKLAQ-----------IIPKEV--KDPRLTGFVTISAVKVAADLGHA 50
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
KVY +V DD+ AI L + A Y+R L R + LR P++ F+ DES E G R+ +
Sbjct: 51 KVYFTVLNDDKKTVAAI--LNAAASYLRGALARSITLRTVPQLHFVYDESIEYGQRLSRL 108
Query: 186 LDRI 189
+D++
Sbjct: 109 IDKV 112
>gi|283797341|ref|ZP_06346494.1| ribosome-binding factor A [Clostridium sp. M62/1]
gi|291075013|gb|EFE12377.1| ribosome-binding factor A [Clostridium sp. M62/1]
gi|295090491|emb|CBK76598.1| ribosome-binding factor A [Clostridium cf. saccharolyticum K10]
gi|295115415|emb|CBL36262.1| ribosome-binding factor A [butyrate-producing bacterium SM4/1]
Length = 143
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 13/117 (11%)
Query: 73 VAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVF 132
+ ++QRELS+++ + D + +TT+ VEV+ DL+ K Y+SV
Sbjct: 24 INSEVQRELSEIISREI-------------KDPRIHPMTTVVAVEVTPDLKYCKAYISVL 70
Query: 133 GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRI 189
G + + I GLKS +VR QL R+ LR TPEI F+ D+S E G + +++ +
Sbjct: 71 GSEEAGKETIKGLKSAEGFVRRQLASRINLRNTPEITFVLDQSIEYGVNMTHLINEV 127
>gi|312143663|ref|YP_003995109.1| ribosome-binding factor A [Halanaerobium hydrogeniformans]
gi|311904314|gb|ADQ14755.1| ribosome-binding factor A [Halanaerobium hydrogeniformans]
Length = 127
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 56/90 (62%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEI 168
+ +++DV+VS DL+ KV+VSVFG D+ KE + GL Y+R +G R+K+ TPEI
Sbjct: 31 AFVSVTDVKVSGDLRHAKVFVSVFGTDKEKEETMEGLDKATGYIRKLVGERVKIHHTPEI 90
Query: 169 RFIEDESFERGSRVIAILDRIKAEKEAAKS 198
F D+S E+G + I++ +K E +S
Sbjct: 91 IFRYDDSIEQGVHISKIINNLKESGEIKES 120
>gi|392960726|ref|ZP_10326191.1| Ribosome-binding factor A [Pelosinus fermentans DSM 17108]
gi|421054516|ref|ZP_15517484.1| ribosome-binding factor A [Pelosinus fermentans B4]
gi|421057962|ref|ZP_15520709.1| Ribosome-binding factor A [Pelosinus fermentans B3]
gi|421066402|ref|ZP_15528015.1| Ribosome-binding factor A [Pelosinus fermentans A12]
gi|421071378|ref|ZP_15532498.1| Ribosome-binding factor A [Pelosinus fermentans A11]
gi|421075984|ref|ZP_15536986.1| Ribosome-binding factor A [Pelosinus fermentans JBW45]
gi|392440874|gb|EIW18534.1| ribosome-binding factor A [Pelosinus fermentans B4]
gi|392447294|gb|EIW24548.1| Ribosome-binding factor A [Pelosinus fermentans A11]
gi|392454623|gb|EIW31445.1| Ribosome-binding factor A [Pelosinus fermentans DSM 17108]
gi|392456256|gb|EIW33009.1| Ribosome-binding factor A [Pelosinus fermentans A12]
gi|392461788|gb|EIW37941.1| Ribosome-binding factor A [Pelosinus fermentans B3]
gi|392525843|gb|EIW48967.1| Ribosome-binding factor A [Pelosinus fermentans JBW45]
Length = 118
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 73/125 (58%), Gaps = 14/125 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
RV+ V + I++E+S ++LT+ L + +G TI+ VE + DL+ K+Y
Sbjct: 5 RVEKVQEFIKQEISKIILTE-------LKDPRVG-------FATITQVEATGDLRSAKIY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VS+ G D K GL+S Y+RS++G+R+++R+TPE+ DES + + + +L +
Sbjct: 51 VSLMGSDEQKADTWKGLQSSLGYMRSEIGKRIRMRITPELSLHLDESLDYSAHIQELLIK 110
Query: 189 IKAEK 193
IK E+
Sbjct: 111 IKQEE 115
>gi|421860632|ref|ZP_16292738.1| ribosome-binding factor A [Paenibacillus popilliae ATCC 14706]
gi|410829818|dbj|GAC43175.1| ribosome-binding factor A [Paenibacillus popilliae ATCC 14706]
Length = 118
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 77/133 (57%), Gaps = 15/133 (11%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MAN R + V +Q+++ELS ++ + L + +G T++ V+V+ DL
Sbjct: 1 MANFRSGR-VGEQMKKELSQLIQLE-------LKDPRIG-------FVTVTGVDVTNDLS 45
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
+ +VY+SV G + KE I L+ + ++RS++G+R++LR TPE+ F D S E GSR+
Sbjct: 46 LARVYLSVMGTEEEKEDTIKALEKASGFLRSEIGKRIRLRHTPELSFKIDASIEYGSRIE 105
Query: 184 AILDRIKAEKEAA 196
+L I+ ++E
Sbjct: 106 KLLGDIRDDRETT 118
>gi|427392505|ref|ZP_18886510.1| ribosome-binding factor A [Alloiococcus otitis ATCC 51267]
gi|425731466|gb|EKU94284.1| ribosome-binding factor A [Alloiococcus otitis ATCC 51267]
Length = 118
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 68/125 (54%), Gaps = 15/125 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R VA++I+RE +D +L+ V G TI+D EV+ADLQ K++
Sbjct: 5 RQGRVAQEIKREATD------ILRNEVRDPRVDGV--------TITDAEVTADLQHAKIF 50
Query: 129 VSVFGDD-RGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
S DD + K GL + VRS++G R+KL TPEIRF+ DES E G+R+ I++
Sbjct: 51 YSTLSDDDQVKTETQEGLDKASGLVRSEIGNRIKLFKTPEIRFVRDESLEYGNRIDQIIN 110
Query: 188 RIKAE 192
+ E
Sbjct: 111 ELHQE 115
>gi|220916338|ref|YP_002491642.1| ribosome-binding factor A [Anaeromyxobacter dehalogenans 2CP-1]
gi|254789727|sp|B8JFY8.1|RBFA_ANAD2 RecName: Full=Ribosome-binding factor A
gi|219954192|gb|ACL64576.1| ribosome-binding factor A [Anaeromyxobacter dehalogenans 2CP-1]
Length = 139
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 62/99 (62%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLR 163
D ++ T++ ++S DL+ VYVS+ GD+R ++ AGL++ A +++ ++ R ++LR
Sbjct: 28 DPRITGFVTVTGSKMSPDLKEATVYVSIHGDERVRKDTFAGLQAAAGFLQREVSRALRLR 87
Query: 164 LTPEIRFIEDESFERGSRVIAILDRIKAEKEAAKSKNKE 202
TP +RF+ DES RG R+ +L + + +AA + + E
Sbjct: 88 NTPHLRFVYDESVARGDRIERLLREARTQGQAAPAPDVE 126
>gi|261407935|ref|YP_003244176.1| ribosome-binding factor A [Paenibacillus sp. Y412MC10]
gi|329929300|ref|ZP_08283053.1| ribosome-binding factor A [Paenibacillus sp. HGF5]
gi|261284398|gb|ACX66369.1| ribosome-binding factor A [Paenibacillus sp. Y412MC10]
gi|328936669|gb|EGG33112.1| ribosome-binding factor A [Paenibacillus sp. HGF5]
Length = 117
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 69/121 (57%), Gaps = 14/121 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R V +QI++ELS ++ T+ L + +G T++ V+V+ DL KVY
Sbjct: 5 RTGRVGEQIKKELSQLIQTE-------LKDPRIG-------FITVTGVDVTNDLSQAKVY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+SV GDD K ++ GL+ + ++RS+LG+R++LR PE+ F D+S GS + +L
Sbjct: 51 LSVLGDDEQKAASLKGLEKASGFLRSELGKRIRLRHVPELIFKFDDSIAYGSHIEKLLTE 110
Query: 189 I 189
I
Sbjct: 111 I 111
>gi|395647273|ref|ZP_10435123.1| ribosome-binding factor A [Pseudomonas extremaustralis 14-3 substr.
14-3b]
Length = 131
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 79/149 (53%), Gaps = 26/149 (17%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + +G L TI+ VEVS D+ K++
Sbjct: 7 RTQRIGDQMQRELAQLIRRE-------VKDPRVG-------LVTITAVEVSRDVGHAKIF 52
Query: 129 VSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G+D +E+A I L + A ++R QL R MKLR P++ F DES RG+ + A++
Sbjct: 53 ITVMGEDSSEEIAQSIKVLNAAAGFLRMQLAREMKLRSVPQLHFHYDESVVRGAHLSALI 112
Query: 187 DRIKAEKEAAKSKNKEQFESPDLPEDERD 215
+R AE + P PED ++
Sbjct: 113 ERAVAEDN----------QHPSTPEDAKE 131
>gi|224825866|ref|ZP_03698970.1| ribosome-binding factor A [Pseudogulbenkiania ferrooxidans 2002]
gi|224602090|gb|EEG08269.1| ribosome-binding factor A [Pseudogulbenkiania ferrooxidans 2002]
Length = 132
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 75/138 (54%), Gaps = 15/138 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R +++QIQREL+++L G + TI+ VEV+ D K+Y
Sbjct: 10 RADRISEQIQRELAELLRK--------------GLKDPRAGWITITSVEVTRDYSHAKIY 55
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+V DD+ +EV L+ A Y+RS+LGR +++ TP++ F+ DES ERG + ++++
Sbjct: 56 YTVM-DDKTREVTQEALEHAAGYLRSELGRALQIFTTPQLHFVYDESIERGMHMTRLINQ 114
Query: 189 IKAEKEAAKSKNKEQFES 206
+ E K++ +E E+
Sbjct: 115 VSEEYAEPKTEPEEGNEA 132
>gi|323701867|ref|ZP_08113537.1| ribosome-binding factor A [Desulfotomaculum nigrificans DSM 574]
gi|333923679|ref|YP_004497259.1| ribosome-binding factor A [Desulfotomaculum carboxydivorans
CO-1-SRB]
gi|323533171|gb|EGB23040.1| ribosome-binding factor A [Desulfotomaculum nigrificans DSM 574]
gi|333749240|gb|AEF94347.1| Ribosome-binding factor A [Desulfotomaculum carboxydivorans
CO-1-SRB]
Length = 120
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 72/122 (59%), Gaps = 14/122 (11%)
Query: 73 VAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVF 132
+A+ I++E++D++ T+ + + +G TI+ VEV+ DL K++VSV
Sbjct: 8 LAEAIKKEIADLIRTE-------IKDPRVG-------FVTITGVEVTRDLSYAKIFVSVM 53
Query: 133 GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRIKAE 192
G D ++ +A L+ A Y+RS++GRR+K+R PE+ F D S + G+R++ +L +
Sbjct: 54 GSDDQRKETMAVLQKAAGYMRSEVGRRIKVRHVPELMFKLDTSLDHGTRIMELLQEVNKR 113
Query: 193 KE 194
+E
Sbjct: 114 EE 115
>gi|315634098|ref|ZP_07889387.1| ribosome-binding factor A [Aggregatibacter segnis ATCC 33393]
gi|315477348|gb|EFU68091.1| ribosome-binding factor A [Aggregatibacter segnis ATCC 33393]
Length = 128
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 60/96 (62%), Gaps = 2/96 (2%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTP 166
S+ T+SDVEVS+DL KV+V+ D + +A + GL+ A Y+R+ LG+ M+LR+ P
Sbjct: 33 SMVTVSDVEVSSDLAYAKVFVTFLFDHDEQAIAQGMKGLEKAAPYIRTLLGKAMRLRIVP 92
Query: 167 EIRFIEDESFERGSRVIAILDRIKAEKEAAKSKNKE 202
EIRFI D+S G R+ ++ + E E ++K+
Sbjct: 93 EIRFIYDQSLVEGMRMSNLVTNVVREDEKKHVEDKD 128
>gi|291460008|ref|ZP_06599398.1| ribosome-binding factor A [Oribacterium sp. oral taxon 078 str.
F0262]
gi|291417349|gb|EFE91068.1| ribosome-binding factor A [Oribacterium sp. oral taxon 078 str.
F0262]
Length = 139
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 67/110 (60%), Gaps = 1/110 (0%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLR 163
D +S +T I+ V+++ DLQ KVYVS G + + + GL++ + ++R +L R + LR
Sbjct: 29 DARVSPMTNITGVDLTPDLQYCKVYVSALGGEEVLDKTMEGLRAASGFLRRELARSLNLR 88
Query: 164 LTPEIRFIEDESFERGSRVIAILDRIKAEKEAAKSKNKEQFESPDLPEDE 213
TPE+ F+ D S E GSR+ A++ R+ +E++ +K + + E EDE
Sbjct: 89 HTPELSFVADRSAEYGSRMDALIRRV-SEEDRSKPEGRPVNEQNRYDEDE 137
>gi|229829172|ref|ZP_04455241.1| hypothetical protein GCWU000342_01257 [Shuttleworthia satelles DSM
14600]
gi|229792335|gb|EEP28449.1| hypothetical protein GCWU000342_01257 [Shuttleworthia satelles DSM
14600]
Length = 125
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 55/89 (61%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLR 163
D +S +T+++ VEV+ DL+ KVYVSV GD + GLKS A ++R +L + LR
Sbjct: 29 DPRVSLMTSVTLVEVAPDLKTAKVYVSVLGDKEAGINTVKGLKSSAGFIRGKLAHSVNLR 88
Query: 164 LTPEIRFIEDESFERGSRVIAILDRIKAE 192
TPE+ FI D+S G R+ ++D++ E
Sbjct: 89 NTPELFFILDDSIAYGVRMSKLIDQVNEE 117
>gi|157962877|ref|YP_001502911.1| ribosome-binding factor A [Shewanella pealeana ATCC 700345]
gi|189039561|sp|A8H739.1|RBFA_SHEPA RecName: Full=Ribosome-binding factor A
gi|157847877|gb|ABV88376.1| ribosome-binding factor A [Shewanella pealeana ATCC 700345]
Length = 142
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 63/112 (56%), Gaps = 4/112 (3%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDD-RGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPE 167
T++DV+VS DL KVYV+ F +D + E +A L + A Y+RS + RMKLR+ PE
Sbjct: 33 GFVTVNDVDVSRDLSYAKVYVTFFEEDEKLVEQKVAALDAAAGYIRSLVAGRMKLRVMPE 92
Query: 168 IRFIEDESFERGSRVIAILDRIKAEKEAAKSKNKEQFESPDLPEDERDWEGD 219
+RFI D S G R+ ++ R+ + EA K K+ D + + EGD
Sbjct: 93 LRFIYDSSLVEGMRMSNLVSRVISNDEA---KQKQHGVETDAEQGDTKEEGD 141
>gi|375088705|ref|ZP_09735043.1| ribosome-binding factor A [Dolosigranulum pigrum ATCC 51524]
gi|374561670|gb|EHR33009.1| ribosome-binding factor A [Dolosigranulum pigrum ATCC 51524]
Length = 113
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 73/123 (59%), Gaps = 15/123 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
RV+ V+++I RE++D+LL K ++ D + ++T I+DVEV+ DLQ VY
Sbjct: 5 RVERVSQEILREVNDILL--KTVK-----------DPRVQNVT-ITDVEVTGDLQHATVY 50
Query: 129 VSVF-GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
S D++ +E GL A VRS++G R+KL TPEIRF D+S E+G R+ IL
Sbjct: 51 YSTLEKDEQAREDTQTGLDKIAGLVRSEIGNRIKLYKTPEIRFERDKSLEQGQRIEKILK 110
Query: 188 RIK 190
+K
Sbjct: 111 DLK 113
>gi|317129160|ref|YP_004095442.1| ribosome-binding factor A [Bacillus cellulosilyticus DSM 2522]
gi|315474108|gb|ADU30711.1| ribosome-binding factor A [Bacillus cellulosilyticus DSM 2522]
Length = 116
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 76/129 (58%), Gaps = 15/129 (11%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
M+N R V +QI++E+++++ + + + +G T++ V+V+ DLQ
Sbjct: 1 MSNVR-ANRVGEQIKKEITEIIQRE-------IKDPRVG-------FITVTAVDVTGDLQ 45
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
+++V+GDD + +A L+ ++RS++G+R++LR TP++ F DES ERG+R+
Sbjct: 46 QATAFITVYGDDDQRSNTLAALEKAKGFIRSEIGKRIQLRKTPDLSFKFDESIERGNRIE 105
Query: 184 AILDRIKAE 192
+L ++ E
Sbjct: 106 ELLRKLNEE 114
>gi|440780948|ref|ZP_20959419.1| ribosome-binding factor A [Clostridium pasteurianum DSM 525]
gi|440221536|gb|ELP60741.1| ribosome-binding factor A [Clostridium pasteurianum DSM 525]
Length = 120
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 58/91 (63%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLR 163
D L++L +++ V+V+ DL+ KV+VS+ GDD K ++ LK A ++R ++G ++ LR
Sbjct: 27 DPRLNTLISVTKVDVTKDLRYAKVFVSILGDDNVKNESLNILKKSAGFIRREVGHKVSLR 86
Query: 164 LTPEIRFIEDESFERGSRVIAILDRIKAEKE 194
LTPEI D S E+G + +IL +IK E
Sbjct: 87 LTPEIIIELDNSIEQGMHIDSILQKIKETTE 117
>gi|395498848|ref|ZP_10430427.1| ribosome-binding factor A [Pseudomonas sp. PAMC 25886]
gi|395797980|ref|ZP_10477267.1| ribosome-binding factor A [Pseudomonas sp. Ag1]
gi|421140194|ref|ZP_15600214.1| ribosome-binding factor A [Pseudomonas fluorescens BBc6R8]
gi|395337972|gb|EJF69826.1| ribosome-binding factor A [Pseudomonas sp. Ag1]
gi|404508586|gb|EKA22536.1| ribosome-binding factor A [Pseudomonas fluorescens BBc6R8]
Length = 133
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 71/126 (56%), Gaps = 16/126 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + +G L TI+ VEVS D+ K++
Sbjct: 7 RTQRIGDQMQRELAQLIRRE-------VKDPRVG-------LVTITAVEVSRDVGHAKIF 52
Query: 129 VSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G D +E+A I L S A ++R QL R MKLR P++ F DES RG+ + A++
Sbjct: 53 ITVMGQDNSEEIAQSIKVLNSAAGFLRMQLAREMKLRSVPQLHFHYDESVVRGAHLSALI 112
Query: 187 DRIKAE 192
+R AE
Sbjct: 113 ERAVAE 118
>gi|83589899|ref|YP_429908.1| ribosome-binding factor A [Moorella thermoacetica ATCC 39073]
gi|123524645|sp|Q2RJM4.1|RBFA_MOOTA RecName: Full=Ribosome-binding factor A
gi|83572813|gb|ABC19365.1| ribosome-binding factor A [Moorella thermoacetica ATCC 39073]
Length = 122
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 53/87 (60%)
Query: 105 RYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRL 164
R + L +++ VE+S D KVYVS++GD+ + A+ GL ++R ++G+R+ LR
Sbjct: 30 RLEAGLVSVTGVELSNDRHYAKVYVSIYGDEEARNQAMEGLARATSFIRREIGQRLSLRY 89
Query: 165 TPEIRFIEDESFERGSRVIAILDRIKA 191
TPEI F D S E G + +L R++A
Sbjct: 90 TPEITFKLDVSIEHGDHINRLLARVRA 116
>gi|407718146|ref|YP_006795551.1| ribosome-binding factor A [Leuconostoc carnosum JB16]
gi|407241902|gb|AFT81552.1| ribosome-binding factor A [Leuconostoc carnosum JB16]
Length = 117
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 76/134 (56%), Gaps = 23/134 (17%)
Query: 64 MANPRRVKMVAKQIQRELSDMLL---TDKVLQFAVLPEAALGADRYLSSLTTISDVEVSA 120
MANP+R +A+++QR+++D+LL D +Q T++ VE+S
Sbjct: 1 MANPQRAGRLAQEVQRDVTDLLLKRINDPRVQD-----------------VTVTSVELSG 43
Query: 121 DLQVVKVYVSVFGD--DRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFER 178
DLQ+ VY S+ D GK+ A AGL++ +R +LG R+ + TPE++F+ D+S +
Sbjct: 44 DLQIATVYYSILSDLASDGKK-AQAGLEAANGLIRKELGARLTVYKTPELKFVRDQSVQY 102
Query: 179 GSRVIAILDRIKAE 192
G+ + ++ ++ +E
Sbjct: 103 GNHIEDLIRKLHSE 116
>gi|229592635|ref|YP_002874754.1| ribosome-binding factor A [Pseudomonas fluorescens SBW25]
gi|259552059|sp|C3K258.1|RBFA_PSEFS RecName: Full=Ribosome-binding factor A
gi|229364501|emb|CAY52349.1| ribosome-binding factor A [Pseudomonas fluorescens SBW25]
Length = 131
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 26/149 (17%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + +G L TI+ VEVS D+ K++
Sbjct: 7 RTQRIGDQMQRELAQLIRRE-------VKDPRVG-------LVTITAVEVSRDVGHAKIF 52
Query: 129 VSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G D +E+A I L + A ++R QL R MKLR P++ F DES RG+ + A++
Sbjct: 53 ITVMGQDSAEEIAQSIKVLNAAAGFLRMQLAREMKLRSVPQLHFHYDESVVRGAHLSALI 112
Query: 187 DRIKAEKEAAKSKNKEQFESPDLPEDERD 215
+R AE + P PED ++
Sbjct: 113 ERAVAEDS----------QHPSTPEDAKE 131
>gi|89072576|ref|ZP_01159148.1| ribosome-binding factor A [Photobacterium sp. SKA34]
gi|89051680|gb|EAR57133.1| ribosome-binding factor A [Photobacterium sp. SKA34]
Length = 131
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 70/115 (60%), Gaps = 15/115 (13%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + VA+Q+Q+EL+ +L + + + A+ ++TTIS V+VS D+ K+Y
Sbjct: 7 RTQRVAQQLQKELAVILQRE-------IKDPAI-------AMTTISSVDVSRDMNYAKIY 52
Query: 129 VSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
V+ F ++ E ++A L+ A Y+RS LG+ ++LR+TPE+ FI D+S G R+
Sbjct: 53 VTFFPIGEQTAEGSLAALREMAPYIRSLLGKEIRLRVTPELNFIFDQSLTEGMRI 107
>gi|53804605|ref|YP_113776.1| ribosome-binding factor A [Methylococcus capsulatus str. Bath]
gi|61214821|sp|Q609C1.1|RBFA_METCA RecName: Full=Ribosome-binding factor A
gi|53758366|gb|AAU92657.1| ribosome-binding factor A [Methylococcus capsulatus str. Bath]
Length = 119
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 58/107 (54%), Gaps = 14/107 (13%)
Query: 73 VAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVF 132
V+ Q+QRE+++ L T G D + T+SDV+VS DL V KV+V+
Sbjct: 11 VSAQMQREIAEFLRT--------------GIDAPELGMVTVSDVDVSRDLAVAKVFVTFL 56
Query: 133 GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERG 179
G A+ L A +R LGRRM++R+ PEIRF D+S ERG
Sbjct: 57 GARLETRAAVKRLGEFAPQLRQVLGRRMRMRIIPEIRFAYDDSLERG 103
>gi|347540633|ref|YP_004848058.1| ribosome-binding factor A [Pseudogulbenkiania sp. NH8B]
gi|345643811|dbj|BAK77644.1| ribosome-binding factor A [Pseudogulbenkiania sp. NH8B]
Length = 132
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 75/138 (54%), Gaps = 15/138 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R +++QIQREL+++L G + TI+ VEV+ D K+Y
Sbjct: 10 RADRISEQIQRELAELLRK--------------GLKDPRAGWITITSVEVTRDYSHAKIY 55
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+V DD+ +EV L+ A Y+RS+LGR +++ TP++ F+ DES ERG + ++++
Sbjct: 56 YTVM-DDKTREVTQEALEHAAGYLRSELGRALQIFTTPQLHFVYDESIERGMHMTRLINQ 114
Query: 189 IKAEKEAAKSKNKEQFES 206
+ E K++ +E E+
Sbjct: 115 VSEEYAEPKTEPEEGDEA 132
>gi|289423163|ref|ZP_06424978.1| ribosome-binding factor A [Peptostreptococcus anaerobius 653-L]
gi|429727380|ref|ZP_19262153.1| ribosome-binding factor A [Peptostreptococcus anaerobius VPI 4330]
gi|289156494|gb|EFD05144.1| ribosome-binding factor A [Peptostreptococcus anaerobius 653-L]
gi|429152682|gb|EKX95497.1| ribosome-binding factor A [Peptostreptococcus anaerobius VPI 4330]
Length = 115
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 67/111 (60%), Gaps = 15/111 (13%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R++ +++++++ +S ML+ D ++S+ +++DVEV+ DL+ VY
Sbjct: 5 RIRRISEEVKKAISVMLINGI-------------KDPRITSMISVTDVEVTNDLRYAFVY 51
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERG 179
+S+ G D KE ++ GL S Y+R ++GR++KLR PEI F D+S ERG
Sbjct: 52 ISILGGD--KEESLEGLNSARGYIRREVGRQVKLRYAPEIIFKIDDSIERG 100
>gi|406939720|gb|EKD72684.1| ribosome-binding factor A [uncultured bacterium]
Length = 115
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEI 168
+ TI+ V VS DL KV+VSV +D+ E IA L + AKY+R L ++LR+TPE+
Sbjct: 33 GMVTITGVNVSHDLAFAKVFVSVLEEDKADET-IAALNNAAKYLRYLLANAVELRITPEL 91
Query: 169 RFIEDESFERGSRVIAILD 187
+F+ D+S RGSR+ ++++
Sbjct: 92 KFVYDDSIARGSRISSLIN 110
>gi|330807484|ref|YP_004351946.1| ribosome-binding factor A [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|378948808|ref|YP_005206296.1| protein RbfA [Pseudomonas fluorescens F113]
gi|423093474|ref|ZP_17081270.1| ribosome-binding factor A [Pseudomonas fluorescens Q2-87]
gi|423695297|ref|ZP_17669787.1| ribosome-binding factor A [Pseudomonas fluorescens Q8r1-96]
gi|327375592|gb|AEA66942.1| ribosome-binding factor A; RBFA, Ribosome-binding factor A
superfamily [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|359758822|gb|AEV60901.1| RbfA [Pseudomonas fluorescens F113]
gi|388008713|gb|EIK69964.1| ribosome-binding factor A [Pseudomonas fluorescens Q8r1-96]
gi|397885016|gb|EJL01499.1| ribosome-binding factor A [Pseudomonas fluorescens Q2-87]
Length = 133
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 71/126 (56%), Gaps = 16/126 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + +G L TI+ VEVS D+ K++
Sbjct: 7 RTQRIGDQMQRELAQLIRRE-------VKDPRVG-------LVTITAVEVSRDVGHAKIF 52
Query: 129 VSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G D +E+A I L S A ++R QL R MKLR P++ F DES RG+ + A++
Sbjct: 53 ITVMGQDSAEEIAQSIKVLNSAAGFLRMQLAREMKLRSVPQLHFHYDESVVRGAHLSALI 112
Query: 187 DRIKAE 192
+R AE
Sbjct: 113 ERAVAE 118
>gi|414155204|ref|ZP_11411519.1| Ribosome-binding factor A [Desulfotomaculum hydrothermale Lam5 =
DSM 18033]
gi|411453254|emb|CCO09423.1| Ribosome-binding factor A [Desulfotomaculum hydrothermale Lam5 =
DSM 18033]
Length = 119
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 73/128 (57%), Gaps = 14/128 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + +A+ I++E +D+L D + + +G T++ VEV+ DL KV+
Sbjct: 4 RPERIAEAIKKETADILSND-------IKDPRVG-------FVTVTGVEVTRDLSYAKVF 49
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VSV G + ++ + L+ A Y+RS++GRR+K+R PEI F D S + G+R++ IL +
Sbjct: 50 VSVMGSEERRKETLNVLQKCAGYLRSEIGRRIKIRHAPEIIFKLDTSLDHGTRIMEILQQ 109
Query: 189 IKAEKEAA 196
I ++ +
Sbjct: 110 INRQENTS 117
>gi|408479037|ref|ZP_11185256.1| ribosome-binding factor A [Pseudomonas sp. R81]
Length = 131
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 26/149 (17%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + +G L TI+ VEVS D+ K++
Sbjct: 7 RTQRIGDQMQRELAQLIRRE-------VKDPRVG-------LVTITAVEVSRDVGHAKIF 52
Query: 129 VSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G D +E+A I L S + ++R QL R MKLR P++ F DES RG+ + A++
Sbjct: 53 ITVMGQDSSEEIAQSIKVLNSASGFLRMQLAREMKLRSVPQLHFHYDESVVRGAHLSALI 112
Query: 187 DRIKAEKEAAKSKNKEQFESPDLPEDERD 215
+R AE + P PED ++
Sbjct: 113 ERAVAEDS----------QHPSTPEDAKE 131
>gi|402817508|ref|ZP_10867096.1| ribosome-binding factor A [Paenibacillus alvei DSM 29]
gi|402505030|gb|EJW15557.1| ribosome-binding factor A [Paenibacillus alvei DSM 29]
Length = 117
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 75/127 (59%), Gaps = 15/127 (11%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MAN R + V +Q+++ELS ++ T+ + + +G T++ V+V+ DL
Sbjct: 1 MANFRSGR-VGEQMKKELSQLIQTE-------IKDPRIG-------FITVTGVDVTNDLS 45
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
KVY+SV G++ KE ++ L+ + ++RS++G+R++LR TPE+ F D S E GS +
Sbjct: 46 QAKVYLSVMGNEEQKEQSMKALEKASGFLRSEIGKRIRLRHTPELLFKIDSSIEYGSHIE 105
Query: 184 AILDRIK 190
+L I+
Sbjct: 106 KLLGEIR 112
>gi|350561997|ref|ZP_08930834.1| ribosome-binding factor A [Thioalkalivibrio thiocyanoxidans ARh 4]
gi|349780315|gb|EGZ34650.1| ribosome-binding factor A [Thioalkalivibrio thiocyanoxidans ARh 4]
Length = 142
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 74/140 (52%), Gaps = 14/140 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + V Q+QREL++++ + + + +G + T+S VEVS DL KV+
Sbjct: 9 RSERVGDQMQRELAELIRLE-------VKDPRVG-------MITLSGVEVSRDLAHAKVF 54
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+ G + A GL A Y+R LG R++LR P +RFI D++ ERG+R+ A++D
Sbjct: 55 FTQLGGEAKGLEAQQGLNHAAGYLRHALGTRLRLRSVPTLRFIYDDTPERGARISALIDS 114
Query: 189 IKAEKEAAKSKNKEQFESPD 208
AE A ++ ES D
Sbjct: 115 AIAEDIARHPQDAPSDESVD 134
>gi|398870579|ref|ZP_10625901.1| ribosome-binding factor A [Pseudomonas sp. GM74]
gi|426407620|ref|YP_007027719.1| ribosome-binding factor A [Pseudomonas sp. UW4]
gi|398207816|gb|EJM94559.1| ribosome-binding factor A [Pseudomonas sp. GM74]
gi|426265837|gb|AFY17914.1| ribosome-binding factor A [Pseudomonas sp. UW4]
Length = 133
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 71/126 (56%), Gaps = 16/126 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + +G L TI+ VEVS D+ K++
Sbjct: 7 RTQRIGDQMQRELAQLIRRE-------VKDPRVG-------LVTITAVEVSRDVGHAKIF 52
Query: 129 VSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G D +E+A I L S A ++R QL R MKLR P++ F DES RG+ + A++
Sbjct: 53 ITVMGQDSAEEIAQSIKVLNSAAGFLRMQLAREMKLRSVPQLHFHYDESVVRGAHLSALI 112
Query: 187 DRIKAE 192
+R AE
Sbjct: 113 ERAVAE 118
>gi|268316869|ref|YP_003290588.1| ribosome-binding factor A [Rhodothermus marinus DSM 4252]
gi|345303215|ref|YP_004825117.1| ribosome-binding factor A [Rhodothermus marinus SG0.5JP17-172]
gi|262334403|gb|ACY48200.1| ribosome-binding factor A [Rhodothermus marinus DSM 4252]
gi|345112448|gb|AEN73280.1| ribosome-binding factor A [Rhodothermus marinus SG0.5JP17-172]
Length = 126
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 70/125 (56%), Gaps = 16/125 (12%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
M++ RV+ V ++REL+D +LQF D+ L +TT++DV+ + DL
Sbjct: 1 MSSSIRVQRVGSLLKRELAD------ILQFEF-------GDQ-LPPMTTVTDVQPTRDLS 46
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMK--LRLTPEIRFIEDESFERGSR 181
+ KVYVS++G K A L+ +R+ L +R++ LR PE+RF+ DE+ ER R
Sbjct: 47 IAKVYVSIYGTPEQKRAAFRRLQELTPQIRAALAQRIRYQLRFMPELRFVLDETLERAQR 106
Query: 182 VIAIL 186
V +L
Sbjct: 107 VEELL 111
>gi|398891846|ref|ZP_10645120.1| ribosome-binding factor A [Pseudomonas sp. GM55]
gi|398909510|ref|ZP_10654576.1| ribosome-binding factor A [Pseudomonas sp. GM49]
gi|398929645|ref|ZP_10664080.1| ribosome-binding factor A [Pseudomonas sp. GM48]
gi|398951731|ref|ZP_10674266.1| ribosome-binding factor A [Pseudomonas sp. GM33]
gi|398156019|gb|EJM44445.1| ribosome-binding factor A [Pseudomonas sp. GM33]
gi|398166714|gb|EJM54806.1| ribosome-binding factor A [Pseudomonas sp. GM48]
gi|398186403|gb|EJM73779.1| ribosome-binding factor A [Pseudomonas sp. GM55]
gi|398187998|gb|EJM75320.1| ribosome-binding factor A [Pseudomonas sp. GM49]
Length = 133
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 71/126 (56%), Gaps = 16/126 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + +G L TI+ VEVS D+ K++
Sbjct: 7 RTQRIGDQMQRELAQLIRRE-------VKDPRVG-------LVTITAVEVSRDVGHAKIF 52
Query: 129 VSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G D +E+A I L S A ++R QL R MKLR P++ F DES RG+ + A++
Sbjct: 53 ITVMGQDSAEEIAQSIKVLNSAAGFLRMQLAREMKLRSVPQLHFHYDESVVRGAHLSALI 112
Query: 187 DRIKAE 192
+R AE
Sbjct: 113 ERAVAE 118
>gi|404418500|ref|ZP_11000267.1| ribosome-binding factor A [Staphylococcus arlettae CVD059]
gi|403489093|gb|EJY94671.1| ribosome-binding factor A [Staphylococcus arlettae CVD059]
Length = 114
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 49/74 (66%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEI 168
TI DVEV+ DL + KVY++V G+D+ + GL+ +++S+LG RM+LR+ PE+
Sbjct: 30 GFLTIIDVEVTNDLSIAKVYLTVLGNDKQVDDTFKGLEKAKGFIKSELGSRMRLRIIPEL 89
Query: 169 RFIEDESFERGSRV 182
F DES + G+++
Sbjct: 90 NFEYDESIDYGNKI 103
>gi|406916779|gb|EKD55715.1| Ribosome-binding factor A [uncultured bacterium]
Length = 139
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 76/151 (50%), Gaps = 25/151 (16%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
RV+ V + RELS+ +++ V D +S TI++V+VS DLQ +VY
Sbjct: 4 RVERVGALLTRELSN------IIKHEV-------KDPRISEFVTITEVKVSKDLQTARVY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
SV GD ++ L A ++R +L R+ +R P ++F DESF+ R+ IL +
Sbjct: 51 YSVVGDRAREQTTGKALNEAANFIRVKLKPRITMRYIPTLKFFLDESFDNAERIYGILKK 110
Query: 189 IKAEKEAAKSKNKEQFESPDLP-----EDER 214
I EK KE+ P++P EDE+
Sbjct: 111 IGDEK-------KEKDGGPEVPAGPDGEDEK 134
>gi|295696159|ref|YP_003589397.1| ribosome-binding factor A [Kyrpidia tusciae DSM 2912]
gi|295411761|gb|ADG06253.1| ribosome-binding factor A [Kyrpidia tusciae DSM 2912]
Length = 119
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 70/121 (57%), Gaps = 14/121 (11%)
Query: 73 VAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVF 132
VA+QI++E++D+L + L + +G TI+ VEVS DLQ KV+ SV
Sbjct: 9 VAEQIKKEITDIL-------YHELKDPRIG-------FVTITGVEVSRDLQHAKVFASVL 54
Query: 133 GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRIKAE 192
G D K +++ L+ ++RS++GRR++L TPEI F D S + R+ ++ +++ E
Sbjct: 55 GSDEEKALSLEALQKATGFIRSEVGRRIRLHHTPEIVFKLDTSEDYSQRISHVIRQLQGE 114
Query: 193 K 193
+
Sbjct: 115 R 115
>gi|82702984|ref|YP_412550.1| ribosome-binding factor A [Nitrosospira multiformis ATCC 25196]
gi|123544258|sp|Q2Y7W3.1|RBFA_NITMU RecName: Full=Ribosome-binding factor A
gi|82411049|gb|ABB75158.1| ribosome-binding factor A [Nitrosospira multiformis ATCC 25196]
Length = 126
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 70/129 (54%), Gaps = 14/129 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R +A QIQREL+D++ + L + +G + T++ VEVS D KV+
Sbjct: 7 RTLRIADQIQRELADLIRNE-------LKDPRIG-------MITLTGVEVSQDYAHAKVF 52
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+ ++ + GL++ A ++R+QL R+KLR+ P++ FI DES ERG R+ ++D
Sbjct: 53 YTTLHNESDNFLVQNGLENAAGFLRTQLLHRLKLRVIPQLHFIYDESIERGVRLSQLIDE 112
Query: 189 IKAEKEAAK 197
A + K
Sbjct: 113 AVASDRSEK 121
>gi|375091590|ref|ZP_09737879.1| ribosome-binding factor A [Helcococcus kunzii ATCC 51366]
gi|374563112|gb|EHR34434.1| ribosome-binding factor A [Helcococcus kunzii ATCC 51366]
Length = 125
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 79/131 (60%), Gaps = 14/131 (10%)
Query: 66 NPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
+ +R+K + ++++E+S ++ T+ L R ++ +T+I++V+++ DLQ
Sbjct: 2 DKKRIKRIESELKKEISALINTE------------LKNPR-IAPITSITEVDLTDDLQSA 48
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
K+YVSVFG + K+ I L+ +++ +LG+RM+LR PE++ I DE E R+ +
Sbjct: 49 KIYVSVFGKEYEKKETIEALQHSIGFIKRELGKRMQLRHIPELKIILDEHIEEAMRMEKL 108
Query: 186 L-DRIKAEKEA 195
+ D IK ++EA
Sbjct: 109 ISDVIKKDEEA 119
>gi|315648093|ref|ZP_07901194.1| ribosome-binding factor A [Paenibacillus vortex V453]
gi|315276739|gb|EFU40082.1| ribosome-binding factor A [Paenibacillus vortex V453]
Length = 117
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 69/121 (57%), Gaps = 14/121 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R V +QI++ELS ++ T+ + + +G T++ V+V+ DL K+Y
Sbjct: 5 RTGRVGEQIKKELSQLIQTE-------MKDPRIG-------FITVTGVDVTNDLSQAKIY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+SV GDD K ++ GL+ + ++RS+LG+R++LR PE+ F D+S GS + +L
Sbjct: 51 LSVLGDDEQKAASLKGLEKASGFLRSELGKRIRLRHVPELIFKFDDSIAYGSHIEKLLTE 110
Query: 189 I 189
I
Sbjct: 111 I 111
>gi|226323227|ref|ZP_03798745.1| hypothetical protein COPCOM_00999 [Coprococcus comes ATCC 27758]
gi|225208417|gb|EEG90771.1| ribosome-binding factor A [Coprococcus comes ATCC 27758]
Length = 123
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 66/117 (56%), Gaps = 13/117 (11%)
Query: 73 VAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVF 132
V ++QRELS +L+ + D ++ +T++ VEV+ DL+ K Y+SV
Sbjct: 11 VNAEVQRELS------TILRGGI-------KDPRVAPMTSVVAVEVAPDLKTCKAYISVL 57
Query: 133 GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRI 189
GD++ + + GL+S Y+R +L + +R TPEI+F+ D+S E G R+ +D +
Sbjct: 58 GDEKAQADTLKGLQSAEGYIRRELAHTLNMRNTPEIKFVLDQSIEYGVRMSKKIDDV 114
>gi|392394567|ref|YP_006431169.1| ribosome-binding factor A [Desulfitobacterium dehalogenans ATCC
51507]
gi|390525645|gb|AFM01376.1| ribosome-binding factor A [Desulfitobacterium dehalogenans ATCC
51507]
Length = 125
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 60/100 (60%), Gaps = 6/100 (6%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEI 168
T++ VEV+ DL KVY+SV GD + + ++ LK A +VRS++G+R++LR PEI
Sbjct: 31 GFVTVTSVEVADDLGSAKVYISVLGDSQQAKDSLDALKKAAGFVRSEIGKRVRLRHAPEI 90
Query: 169 RFIEDESFERGSRVIAILDRIKAEKEAAKSKNKEQFESPD 208
F D S E G+ + +L +K E++ K++ ES D
Sbjct: 91 VFKYDTSIEHGAHIAQLLRGVKHEEQ------KDEGESHD 124
>gi|307546726|ref|YP_003899205.1| ribosome-binding factor A [Halomonas elongata DSM 2581]
gi|307218750|emb|CBV44020.1| ribosome-binding factor A [Halomonas elongata DSM 2581]
Length = 139
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 83/158 (52%), Gaps = 23/158 (14%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
M +R VA Q+Q+EL+ VL + + LG + T+S VEVS DL
Sbjct: 1 MREFKRTDRVADQLQKELA-------VLIQREIKDPRLG-------MVTVSGVEVSRDLG 46
Query: 124 VVKVYVSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSR 181
V+V++ G+ + + +A LK A ++RSQ+ RR+KLR PE+RF DES RG R
Sbjct: 47 YADVHVTLLGEQDAERIKENMAVLKRAAGFLRSQIARRIKLRHVPELRFHYDESVVRGQR 106
Query: 182 VIAILDRIKAEKEAAKSKNKEQFESPDLPEDERDWEGD 219
+ +++D EA + + P+ +DER EG+
Sbjct: 107 LSSLID------EAVANDRDRHDDEPEGGDDER-GEGE 137
>gi|227499042|ref|ZP_03929179.1| ribosome-binding factor A [Acidaminococcus sp. D21]
gi|352684960|ref|YP_004896945.1| ribosome-binding factor A [Acidaminococcus intestini RyC-MR95]
gi|226904491|gb|EEH90409.1| ribosome-binding factor A [Acidaminococcus sp. D21]
gi|350279615|gb|AEQ22805.1| ribosome-binding factor A [Acidaminococcus intestini RyC-MR95]
Length = 119
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 69/121 (57%), Gaps = 21/121 (17%)
Query: 77 IQRELSDMLL---TDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVFG 133
I++ELS+MLL D ++F TI+ VEV+ +L K+YVS++G
Sbjct: 13 IKQELSNMLLREVKDPRVKF-----------------VTITGVEVTNELSYAKIYVSLYG 55
Query: 134 DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRIKAEK 193
++ +E A GL+S Y R+++ +R+KLR+ P + F +D S E + + +IL IK EK
Sbjct: 56 SEKQQEEAWKGLQSCLGYFRTEIAKRIKLRMAPHLSFHKDTSMEYSAHIESILKEIK-EK 114
Query: 194 E 194
E
Sbjct: 115 E 115
>gi|251792717|ref|YP_003007443.1| ribosome-binding factor A [Aggregatibacter aphrophilus NJ8700]
gi|422336264|ref|ZP_16417237.1| ribosome-binding factor A [Aggregatibacter aphrophilus F0387]
gi|247534110|gb|ACS97356.1| ribosome-binding factor A [Aggregatibacter aphrophilus NJ8700]
gi|353346450|gb|EHB90735.1| ribosome-binding factor A [Aggregatibacter aphrophilus F0387]
Length = 128
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 78/137 (56%), Gaps = 16/137 (11%)
Query: 68 RRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKV 127
+R VA++IQ+E++ +L + + + +G + T+SDVEVS+DL KV
Sbjct: 6 KRSDRVAQEIQKEIAVILQRE-------VKDPRIG-------MVTVSDVEVSSDLAYAKV 51
Query: 128 YVSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
+V+ D + +A + GL+ A Y+R+ LG+ M+LR+ PEIRFI D+S G R+ +
Sbjct: 52 FVTFLFDHDEQAIAQGMKGLEKAAPYIRTLLGKAMRLRIVPEIRFIYDQSLVEGMRMSNL 111
Query: 186 LDRIKAEKEAAKSKNKE 202
+ + E E ++K+
Sbjct: 112 VTNVVREDEKKHVEDKD 128
>gi|375308270|ref|ZP_09773556.1| ribosome-binding factor a [Paenibacillus sp. Aloe-11]
gi|375079694|gb|EHS57916.1| ribosome-binding factor a [Paenibacillus sp. Aloe-11]
Length = 116
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 67/121 (55%), Gaps = 14/121 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R V +QI++ELS ++ T+ L + +G T++ V+V+ DL KVY
Sbjct: 5 RTGRVGEQIKKELSLLIQTE-------LKDPRIG-------FITVTGVDVTNDLSQAKVY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+SV GDD K ++ L Y+RS+LG+R++LR PE+ F DES GSR+ +L
Sbjct: 51 LSVLGDDEQKTSSLKALDKANGYLRSELGKRIRLRHIPELIFKIDESIAYGSRIEKLLSD 110
Query: 189 I 189
I
Sbjct: 111 I 111
>gi|206900907|ref|YP_002250934.1| ribosome-binding factor A [Dictyoglomus thermophilum H-6-12]
gi|226723598|sp|B5YEH6.1|RBFA_DICT6 RecName: Full=Ribosome-binding factor A
gi|206740010|gb|ACI19068.1| ribosome-binding factor A [Dictyoglomus thermophilum H-6-12]
Length = 120
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 57/88 (64%)
Query: 107 LSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTP 166
+SS I++V++S DL+ +YVSV+G + K+ + GL+S ++RS+LG+ +++R P
Sbjct: 29 ISSFLVITEVKMSKDLRYAHIYVSVYGSEEEKKQTMQGLESAKGFIRSELGKDLRIRFVP 88
Query: 167 EIRFIEDESFERGSRVIAILDRIKAEKE 194
EI F D+S E+G R++ L + E E
Sbjct: 89 EIFFELDDSLEKGDRILRKLKELGLEDE 116
>gi|302185433|ref|ZP_07262106.1| ribosome-binding factor A [Pseudomonas syringae pv. syringae 642]
Length = 138
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 78/142 (54%), Gaps = 20/142 (14%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + +G L TI+ V+VS D+ K++
Sbjct: 7 RTQRIGDQMQRELAQLIRRE-------IKDPRVG-------LVTITAVDVSRDVGHAKIF 52
Query: 129 VSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G D +E+A I L S A ++R QL R MKLR P++ F DES RG+ + A++
Sbjct: 53 MTVMGQDSAEEIAQTIKVLNSAAGFLRMQLAREMKLRSVPQLHFHYDESVVRGAHLSALI 112
Query: 187 DRIKAEKEAAKSKNKEQFESPD 208
+R AE +++E SPD
Sbjct: 113 ERAVAE----DGQHQEGPASPD 130
>gi|205373416|ref|ZP_03226220.1| ribosome-binding factor A [Bacillus coahuilensis m4-4]
Length = 117
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 58/87 (66%), Gaps = 1/87 (1%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEI 168
T++DV+V+ DLQ KVY++V DD +E + GL ++RS++G R++LR TPE+
Sbjct: 30 GFVTVTDVQVTGDLQQAKVYITVL-DDSKREDTLKGLSKAKGFIRSEIGSRIRLRKTPEL 88
Query: 169 RFIEDESFERGSRVIAILDRIKAEKEA 195
F DES + G+R+ +I+ IK ++++
Sbjct: 89 LFEFDESIQYGNRIESIIRDIKEDEKS 115
>gi|224367582|ref|YP_002601745.1| protein RbfA [Desulfobacterium autotrophicum HRM2]
gi|259551968|sp|C0QHM3.1|RBFA_DESAH RecName: Full=Ribosome-binding factor A
gi|223690298|gb|ACN13581.1| RbfA [Desulfobacterium autotrophicum HRM2]
Length = 119
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 52/80 (65%)
Query: 110 LTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIR 169
L TIS V +++DL++ VY SVFGD+ E A GLKS +++ + ++ LR PE++
Sbjct: 33 LVTISSVRLTSDLRIAYVYFSVFGDEARVEEATQGLKSSHGFIKRHVASQLGLRYMPELK 92
Query: 170 FIEDESFERGSRVIAILDRI 189
FI D+SF+RG+ + +L +
Sbjct: 93 FIHDQSFDRGTHMDQLLKSV 112
>gi|170017450|ref|YP_001728369.1| ribosome-binding factor A [Leuconostoc citreum KM20]
gi|414596854|ref|ZP_11446427.1| Ribosome-binding factor A [Leuconostoc citreum LBAE E16]
gi|421876732|ref|ZP_16308286.1| Ribosome-binding factor A [Leuconostoc citreum LBAE C10]
gi|421878728|ref|ZP_16310206.1| Ribosome-binding factor A [Leuconostoc citreum LBAE C11]
gi|238688972|sp|B1MZH3.1|RBFA_LEUCK RecName: Full=Ribosome-binding factor A
gi|169804307|gb|ACA82925.1| Ribosome-binding factor A [Leuconostoc citreum KM20]
gi|372557410|emb|CCF24406.1| Ribosome-binding factor A [Leuconostoc citreum LBAE C10]
gi|390447424|emb|CCF26326.1| Ribosome-binding factor A [Leuconostoc citreum LBAE C11]
gi|390482506|emb|CCF28488.1| Ribosome-binding factor A [Leuconostoc citreum LBAE E16]
Length = 117
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 77/135 (57%), Gaps = 23/135 (17%)
Query: 64 MANPRRVKMVAKQIQRELSDMLL---TDKVLQFAVLPEAALGADRYLSSLTTISDVEVSA 120
MANP+R +A+++QR+++D+LL D +Q T++ VE+S
Sbjct: 1 MANPQRAGRLAQEVQRDVTDLLLKRINDPRVQD-----------------VTVTSVELSG 43
Query: 121 DLQVVKVYVSVFGD--DRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFER 178
DLQ+ +Y S+ D G++ A AGL++ + +R +LG R+ + TPE++F+ D+S +
Sbjct: 44 DLQIATIYYSILSDLASDGQK-AQAGLEAASGLIRKELGARLTVYKTPELKFVRDQSVQY 102
Query: 179 GSRVIAILDRIKAEK 193
G+ + ++ ++ A+
Sbjct: 103 GNHIEDLIRKLHADN 117
>gi|354559933|ref|ZP_08979174.1| Ribosome-binding factor A [Desulfitobacterium metallireducens DSM
15288]
gi|353539662|gb|EHC09145.1| Ribosome-binding factor A [Desulfitobacterium metallireducens DSM
15288]
Length = 125
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 52/85 (61%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEI 168
T++ VEV+ADL KV+VSV GD + + ++ L A +VRS++G+R++LR PEI
Sbjct: 31 GFVTVTSVEVAADLGHAKVFVSVLGDSQQGKDSLTALNRAAGFVRSEIGKRIRLRHVPEI 90
Query: 169 RFIEDESFERGSRVIAILDRIKAEK 193
F D S E G+ + +L + EK
Sbjct: 91 VFKYDSSIEYGAHIAELLHEVHTEK 115
>gi|189424729|ref|YP_001951906.1| ribosome-binding factor A [Geobacter lovleyi SZ]
gi|259552000|sp|B3EAE8.1|RBFA_GEOLS RecName: Full=Ribosome-binding factor A
gi|189420988|gb|ACD95386.1| ribosome-binding factor A [Geobacter lovleyi SZ]
Length = 123
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 57/93 (61%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEI 168
TI+ VEV+ DL + +++ +V GD+ K+ + AGL S A+++R +LG+ +K+R TP+I
Sbjct: 31 GFVTITGVEVTDDLHLARIFFTVIGDEAAKKSSEAGLNSAARFIRHELGKVLKMRYTPDI 90
Query: 169 RFIEDESFERGSRVIAILDRIKAEKEAAKSKNK 201
F D S E G R+ +L + + S+++
Sbjct: 91 LFKYDHSQEYGQRIDDLLREVGTGNDGNDSEDR 123
>gi|331090934|ref|ZP_08339776.1| ribosome-binding factor A [Lachnospiraceae bacterium 2_1_46FAA]
gi|330405156|gb|EGG84692.1| ribosome-binding factor A [Lachnospiraceae bacterium 2_1_46FAA]
Length = 123
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 64/111 (57%), Gaps = 16/111 (14%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
RV M ++QRELS+ +++ + D ++ +T++ VEV+ DL+ K Y
Sbjct: 10 RVNM---EVQRELSN------IVRGGI-------KDPRVAPMTSVVAVEVAPDLKTCKAY 53
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERG 179
+SVFGD+ +E + GL+S Y+R +L + +R TPEI+F+ D+S G
Sbjct: 54 ISVFGDEMAQEDTLKGLQSAEGYIRRELAHNLNMRNTPEIKFVLDQSIAYG 104
>gi|28899229|ref|NP_798834.1| ribosome-binding factor A [Vibrio parahaemolyticus RIMD 2210633]
gi|153838296|ref|ZP_01990963.1| ribosome-binding factor A [Vibrio parahaemolyticus AQ3810]
gi|260362208|ref|ZP_05775192.1| ribosome-binding factor A [Vibrio parahaemolyticus K5030]
gi|260879076|ref|ZP_05891431.1| ribosome-binding factor A [Vibrio parahaemolyticus AN-5034]
gi|260897747|ref|ZP_05906243.1| ribosome-binding factor A [Vibrio parahaemolyticus Peru-466]
gi|260900803|ref|ZP_05909198.1| ribosome-binding factor A [Vibrio parahaemolyticus AQ4037]
gi|417319045|ref|ZP_12105603.1| ribosome-binding factor A [Vibrio parahaemolyticus 10329]
gi|433658536|ref|YP_007275915.1| Ribosome-binding factor A [Vibrio parahaemolyticus BB22OP]
gi|31076895|sp|Q87M03.1|RBFA_VIBPA RecName: Full=Ribosome-binding factor A
gi|28807453|dbj|BAC60718.1| ribosome-binding factor A [Vibrio parahaemolyticus RIMD 2210633]
gi|149748285|gb|EDM59144.1| ribosome-binding factor A [Vibrio parahaemolyticus AQ3810]
gi|308088966|gb|EFO38661.1| ribosome-binding factor A [Vibrio parahaemolyticus Peru-466]
gi|308089597|gb|EFO39292.1| ribosome-binding factor A [Vibrio parahaemolyticus AN-5034]
gi|308108183|gb|EFO45723.1| ribosome-binding factor A [Vibrio parahaemolyticus AQ4037]
gi|308111465|gb|EFO49005.1| ribosome-binding factor A [Vibrio parahaemolyticus K5030]
gi|328474235|gb|EGF45040.1| ribosome-binding factor A [Vibrio parahaemolyticus 10329]
gi|432509224|gb|AGB10741.1| Ribosome-binding factor A [Vibrio parahaemolyticus BB22OP]
Length = 131
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 79/136 (58%), Gaps = 16/136 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + VA+Q+Q+EL+ M+L +V ++ LG + TISDVEVS DL KV+
Sbjct: 7 RTQRVAQQLQKELA-MILQREV------RDSRLG-------MVTISDVEVSRDLAYAKVF 52
Query: 129 VSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL- 186
V+ ++ E +A L+ ++R LG+R++LRLTPEIRF D + G R+ ++
Sbjct: 53 VTFLCVGEQTPESCLAALREHEVHIRMMLGKRIRLRLTPEIRFYYDNTLVEGMRMSNLVT 112
Query: 187 DRIKAEKEAAKSKNKE 202
+ + ++K+ K+ +E
Sbjct: 113 EVVNSDKQKQKNSGRE 128
>gi|403383294|ref|ZP_10925351.1| ribosome-binding factor A [Kurthia sp. JC30]
Length = 118
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 69/121 (57%), Gaps = 20/121 (16%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R VA+Q+++EL D++ L D + F T++DV V+ DLQ+
Sbjct: 5 RANRVAEQMKKELGDIIGRKLKDPRVGF-----------------ITVTDVAVTGDLQLA 47
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
VY++ G++R K+ + GL+ ++RS++ +R++LR+TPE+ F D S E G+++ +
Sbjct: 48 TVYITSLGNEREKQDTLKGLEKAKGFIRSEIAKRIRLRITPELSFEFDASTEYGNKIDQL 107
Query: 186 L 186
L
Sbjct: 108 L 108
>gi|417957822|ref|ZP_12600741.1| hypothetical protein l13_11500 [Neisseria weaveri ATCC 51223]
gi|343967886|gb|EGV36126.1| hypothetical protein l13_11500 [Neisseria weaveri ATCC 51223]
Length = 105
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Query: 108 SSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPE 167
+ TI+DVEV+ D VY +V DD +EV L+ ++RS+L +R+KL TPE
Sbjct: 17 AGFITINDVEVTRDYSHATVYYTVL-DDAAREVTAEALEHAKGFLRSELSKRIKLFRTPE 75
Query: 168 IRFIEDESFERGSRVIAILDRIKAEK 193
+ FI DES ERG + ++D++ AEK
Sbjct: 76 LHFIYDESLERGMSISHLIDQVAAEK 101
>gi|398855347|ref|ZP_10611843.1| ribosome-binding factor A [Pseudomonas sp. GM80]
gi|398232032|gb|EJN18011.1| ribosome-binding factor A [Pseudomonas sp. GM80]
Length = 133
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 71/126 (56%), Gaps = 16/126 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + +G L TI+ VEVS D+ K++
Sbjct: 7 RTQRIGDQMQRELAQLIRRE-------VKDPRVG-------LVTITAVEVSRDVGHAKIF 52
Query: 129 VSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G D +++A I L S A ++R QL R MKLR P++ F DES RG+ + A++
Sbjct: 53 ITVMGQDNAEDIAQSIKVLNSAAGFLRMQLAREMKLRSVPQLHFHYDESVVRGAHLSALI 112
Query: 187 DRIKAE 192
+R AE
Sbjct: 113 ERAVAE 118
>gi|392971875|ref|ZP_10337267.1| ribosome-binding factor A [Staphylococcus equorum subsp. equorum
Mu2]
gi|392509588|emb|CCI60557.1| ribosome-binding factor A [Staphylococcus equorum subsp. equorum
Mu2]
Length = 114
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 50/74 (67%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEI 168
TI+DV+++ DL + +Y++V G+++ KE GL+ +++S+LG RM+LR+ PE+
Sbjct: 30 GFLTITDVQLTNDLSIATIYLTVLGNEKQKEDTFKGLEKAKGFIKSELGSRMRLRIIPEL 89
Query: 169 RFIEDESFERGSRV 182
F DES + G+++
Sbjct: 90 NFEYDESIDYGNKI 103
>gi|225570598|ref|ZP_03779623.1| hypothetical protein CLOHYLEM_06700 [Clostridium hylemonae DSM
15053]
gi|225160611|gb|EEG73230.1| hypothetical protein CLOHYLEM_06700 [Clostridium hylemonae DSM
15053]
Length = 126
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 60/107 (56%), Gaps = 13/107 (12%)
Query: 73 VAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVF 132
V ++QRELS +++ + D ++ T++ EV+ DL+ K Y+SV
Sbjct: 11 VNTEVQRELSS------IIRGGI-------KDPRVAPWTSVVAAEVAPDLKTCKAYISVL 57
Query: 133 GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERG 179
GD+ ++ I GL+S Y+R +L R + +R TPEI+FI D+S E G
Sbjct: 58 GDEEAQKETIKGLQSAEGYIRRELARNLNMRNTPEIKFILDQSIEYG 104
>gi|403050369|ref|ZP_10904853.1| ribosome-binding factor A [Acinetobacter bereziniae LMG 1003]
gi|445414055|ref|ZP_21433780.1| ribosome-binding factor A [Acinetobacter sp. WC-743]
gi|444764874|gb|ELW89179.1| ribosome-binding factor A [Acinetobacter sp. WC-743]
Length = 131
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 72/130 (55%), Gaps = 20/130 (15%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA +R+K +A +QRELS+++ + L + LG L TIS V+VSADL
Sbjct: 1 MAGSQRLKRMADTVQRELSELIRQE-------LKDPRLGG------LVTISAVKVSADLG 47
Query: 124 VVKVYVSVFGDDRGKEVAIAG-------LKSKAKYVRSQLGRRMKLRLTPEIRFIEDESF 176
+VYV+V G + G E + A L + ++R +LGRR+K R+TP +RF D++
Sbjct: 48 YAEVYVTVMGRELGDEQSEAANKETLDVLNKASGFLRHELGRRIKTRITPRLRFHYDKTN 107
Query: 177 ERGSRVIAIL 186
G+ + ++
Sbjct: 108 AYGNYMFGLI 117
>gi|398992977|ref|ZP_10695936.1| ribosome-binding factor A [Pseudomonas sp. GM21]
gi|407366505|ref|ZP_11113037.1| ribosome-binding factor A [Pseudomonas mandelii JR-1]
gi|398136054|gb|EJM25155.1| ribosome-binding factor A [Pseudomonas sp. GM21]
Length = 133
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 71/126 (56%), Gaps = 16/126 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + +G L TI+ VEVS D+ K++
Sbjct: 7 RTQRIGDQMQRELAQLIRRE-------VKDPRVG-------LVTITAVEVSRDVGHAKIF 52
Query: 129 VSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G D +++A I L S A ++R QL R MKLR P++ F DES RG+ + A++
Sbjct: 53 ITVMGQDNAEDIAQSIKVLNSAAGFLRMQLAREMKLRSVPQLHFHYDESVVRGAHLSALI 112
Query: 187 DRIKAE 192
+R AE
Sbjct: 113 ERAVAE 118
>gi|295094746|emb|CBK83837.1| ribosome-binding factor A [Coprococcus sp. ART55/1]
Length = 137
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 54/105 (51%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLR 163
D +S +T++ DV V+ DL+ K Y+SV GD + AGL S Y+R +L + LR
Sbjct: 29 DPRISPMTSVVDVVVTPDLKFCKAYISVLGDQDAVDSTFAGLNSAMGYIRRELAHSVNLR 88
Query: 164 LTPEIRFIEDESFERGSRVIAILDRIKAEKEAAKSKNKEQFESPD 208
TPEI FI D+S E G + +D + A E ES D
Sbjct: 89 NTPEITFIMDQSIEYGVSMSHKIDEALGKHGDADESTDENSESED 133
>gi|90412486|ref|ZP_01220489.1| putative ribosome-binding factor A [Photobacterium profundum 3TCK]
gi|90326523|gb|EAS42929.1| putative ribosome-binding factor A [Photobacterium profundum 3TCK]
Length = 134
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 68/116 (58%), Gaps = 17/116 (14%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + VA+Q+Q+EL AV+ + L R +TTIS VEVS D+ KV+
Sbjct: 7 RTQRVAQQLQKEL------------AVILQRELKDPRV--GMTTISSVEVSRDMCYAKVF 52
Query: 129 VSVF--GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
V+ F G+ K ++A L+ A Y+RS LG++++LR+TPE+ FI DES G R+
Sbjct: 53 VTFFTIGEQTAKG-SLAVLREMAPYIRSLLGKQIRLRVTPELTFIFDESLTEGMRI 107
>gi|403386823|ref|ZP_10928880.1| ribosome-binding factor A [Clostridium sp. JC122]
Length = 114
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 59/87 (67%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLR 163
D L+++ +++DV+VS DL K+YVS+FG+++ K+ ++A LKS ++R ++G+ +KLR
Sbjct: 27 DPRLTAMVSVTDVDVSKDLSYAKIYVSIFGNEKEKQDSLAALKSSVGFIRKEIGKNVKLR 86
Query: 164 LTPEIRFIEDESFERGSRVIAILDRIK 190
P++ D + ++ + ++ D+IK
Sbjct: 87 QVPQVIIELDTTLDKAMHLESLFDKIK 113
>gi|403046801|ref|ZP_10902270.1| ribosome-binding factor A [Staphylococcus sp. OJ82]
gi|402763497|gb|EJX17590.1| ribosome-binding factor A [Staphylococcus sp. OJ82]
Length = 114
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 50/71 (70%)
Query: 112 TISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFI 171
TI+DV+++ DL + +Y++V G+++ KE GL+ +++S+LG RM+LR+ PE+ F
Sbjct: 33 TITDVQLTNDLSIATIYLTVLGNEKQKEDTFKGLEKAKGFIKSELGSRMRLRIIPELNFE 92
Query: 172 EDESFERGSRV 182
DES + G+++
Sbjct: 93 YDESIDYGNKI 103
>gi|417841577|ref|ZP_12487680.1| Ribosome-binding factor A [Haemophilus haemolyticus M19501]
gi|417841981|ref|ZP_12488076.1| Ribosome-binding factor A [Haemophilus haemolyticus M19501]
gi|341947761|gb|EGT74402.1| Ribosome-binding factor A [Haemophilus haemolyticus M19501]
gi|341948798|gb|EGT75413.1| Ribosome-binding factor A [Haemophilus haemolyticus M19501]
Length = 128
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 73/129 (56%), Gaps = 16/129 (12%)
Query: 68 RRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKV 127
+R VA++IQ+E++ +L + + + +G + T+SDVEVS+DL K+
Sbjct: 6 KRSDRVAQEIQKEIAVILQRE-------VKDPRIG-------MVTVSDVEVSSDLSYAKI 51
Query: 128 YVSVF--GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
+V+ D+ E + GL+ + Y+RS LG+ M+LR+ PEIRFI D+S G R+ +
Sbjct: 52 FVTFLFDHDETAIEQGMKGLEKASPYIRSLLGKAMRLRIVPEIRFIYDQSLVEGMRMSNL 111
Query: 186 LDRIKAEKE 194
+ + E E
Sbjct: 112 VTNVVREDE 120
>gi|422590231|ref|ZP_16664888.1| ribosome-binding factor A [Pseudomonas syringae pv. morsprunorum
str. M302280]
gi|330877232|gb|EGH11381.1| ribosome-binding factor A [Pseudomonas syringae pv. morsprunorum
str. M302280]
Length = 138
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 79/142 (55%), Gaps = 20/142 (14%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + +G L TI+ V+VS D+ K++
Sbjct: 7 RTQRIGDQMQRELAQLIRRE-------IKDPRVG-------LVTITAVDVSRDVGHAKIF 52
Query: 129 VSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G D +++A I L S A ++R QL R MKLR P++ F DES RG+ + A++
Sbjct: 53 MTVMGQDNAEDIAQTIKVLNSAAGFLRMQLAREMKLRSVPQLHFHYDESVVRGAHLSALI 112
Query: 187 DRIKAEKEAAKSKNKEQFESPD 208
+R A+ S+++E SPD
Sbjct: 113 ERAVAQ----DSQHQEDPASPD 130
>gi|291562549|emb|CBL41365.1| ribosome-binding factor A [butyrate-producing bacterium SS3/4]
Length = 131
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 52/80 (65%)
Query: 110 LTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIR 169
+T++ V V+ DL++ K Y+SV D+ + I GLKS ++R+QL +++ LR TP+I
Sbjct: 35 MTSVVQVSVTPDLKICKAYISVLADEEQAKDTIRGLKSAEGFIRTQLAKKVNLRNTPQIF 94
Query: 170 FIEDESFERGSRVIAILDRI 189
F+ D+S E G R+ ++D +
Sbjct: 95 FVLDQSIEYGVRMSKLIDEV 114
>gi|71736021|ref|YP_276310.1| ribosome-binding factor A [Pseudomonas syringae pv. phaseolicola
1448A]
gi|257482260|ref|ZP_05636301.1| ribosome-binding factor A [Pseudomonas syringae pv. tabaci str.
ATCC 11528]
gi|289627534|ref|ZP_06460488.1| ribosome-binding factor A [Pseudomonas syringae pv. aesculi str.
NCPPB 3681]
gi|289646962|ref|ZP_06478305.1| ribosome-binding factor A [Pseudomonas syringae pv. aesculi str.
2250]
gi|416018555|ref|ZP_11565483.1| ribosome-binding factor A [Pseudomonas syringae pv. glycinea str.
B076]
gi|416025185|ref|ZP_11568966.1| ribosome-binding factor A [Pseudomonas syringae pv. glycinea str.
race 4]
gi|422583415|ref|ZP_16658540.1| ribosome-binding factor A [Pseudomonas syringae pv. aesculi str.
0893_23]
gi|422596760|ref|ZP_16671039.1| ribosome-binding factor A [Pseudomonas syringae pv. lachrymans str.
M301315]
gi|123635189|sp|Q48E78.1|RBFA_PSE14 RecName: Full=Ribosome-binding factor A
gi|71556574|gb|AAZ35785.1| ribosome-binding factor A [Pseudomonas syringae pv. phaseolicola
1448A]
gi|298157082|gb|EFH98171.1| Ribosome-binding factor A [Pseudomonas savastanoi pv. savastanoi
NCPPB 3335]
gi|320322527|gb|EFW78620.1| ribosome-binding factor A [Pseudomonas syringae pv. glycinea str.
B076]
gi|320330004|gb|EFW85991.1| ribosome-binding factor A [Pseudomonas syringae pv. glycinea str.
race 4]
gi|330868247|gb|EGH02956.1| ribosome-binding factor A [Pseudomonas syringae pv. aesculi str.
0893_23]
gi|330987056|gb|EGH85159.1| ribosome-binding factor A [Pseudomonas syringae pv. lachrymans str.
M301315]
Length = 138
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 78/142 (54%), Gaps = 20/142 (14%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + +G L TI+ V+VS D+ K++
Sbjct: 7 RTQRIGDQMQRELAQLIRRE-------IKDPRVG-------LVTITAVDVSRDVGHAKIF 52
Query: 129 VSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G D +E+A I L S A ++R QL R MKLR P++ F DES RG+ + A++
Sbjct: 53 MTVMGQDSAEEIAQTIKVLNSAAGFLRMQLAREMKLRSVPQLHFHYDESVVRGAHLSALI 112
Query: 187 DRIKAEKEAAKSKNKEQFESPD 208
+R A+ +++E SPD
Sbjct: 113 ERAVAQ----DGQHQEGSASPD 130
>gi|398938767|ref|ZP_10668069.1| ribosome-binding factor A [Pseudomonas sp. GM41(2012)]
gi|398165239|gb|EJM53359.1| ribosome-binding factor A [Pseudomonas sp. GM41(2012)]
Length = 133
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 71/126 (56%), Gaps = 16/126 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + +G L TI+ VEVS D+ K++
Sbjct: 7 RTQRIGDQMQRELAQLIRRE-------VKDPRVG-------LVTITAVEVSRDVGHAKIF 52
Query: 129 VSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G D +++A I L S A ++R QL R MKLR P++ F DES RG+ + A++
Sbjct: 53 ITVMGQDNAEDIAQSIKVLNSAAGFLRMQLAREMKLRSVPQLHFHYDESVVRGAHLSALI 112
Query: 187 DRIKAE 192
+R AE
Sbjct: 113 ERAVAE 118
>gi|197334491|ref|YP_002155242.1| ribosome-binding factor A [Vibrio fischeri MJ11]
gi|423685199|ref|ZP_17660007.1| ribosome-binding factor A [Vibrio fischeri SR5]
gi|226723615|sp|B5FA80.1|RBFA_VIBFM RecName: Full=Ribosome-binding factor A
gi|197315981|gb|ACH65428.1| ribosome-binding factor A [Vibrio fischeri MJ11]
gi|371495700|gb|EHN71295.1| ribosome-binding factor A [Vibrio fischeri SR5]
Length = 135
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 67/115 (58%), Gaps = 15/115 (13%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + V++Q+Q+EL+ ML + + ++ +G + TISDVEVS DL KV+
Sbjct: 7 RTQRVSQQLQKELAVMLQRE-------VRDSRIG-------MVTISDVEVSRDLAYAKVF 52
Query: 129 VSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
V+ F D+ E ++A LK +R LG+R++LRLTPEIRF D + G R+
Sbjct: 53 VTFFCVGDQTPESSLAALKEHEPSLRMMLGKRIRLRLTPEIRFTYDNTLVEGMRM 107
>gi|68250153|ref|YP_249265.1| ribosome-binding factor A [Haemophilus influenzae 86-028NP]
gi|145629355|ref|ZP_01785154.1| ribosome-binding factor A [Haemophilus influenzae 22.1-21]
gi|145630826|ref|ZP_01786604.1| ribosome-binding factor A [Haemophilus influenzae R3021]
gi|145633238|ref|ZP_01788969.1| ribosome-binding factor A [Haemophilus influenzae 3655]
gi|145634362|ref|ZP_01790072.1| ribosome-binding factor A [Haemophilus influenzae PittAA]
gi|145637806|ref|ZP_01793455.1| ribosome-binding factor A [Haemophilus influenzae PittHH]
gi|145641331|ref|ZP_01796910.1| ribosome-binding factor A [Haemophilus influenzae R3021]
gi|148825872|ref|YP_001290625.1| ribosome-binding factor A [Haemophilus influenzae PittEE]
gi|229845103|ref|ZP_04465238.1| ribosome-binding factor A [Haemophilus influenzae 6P18H1]
gi|229846816|ref|ZP_04466923.1| ribosome-binding factor A [Haemophilus influenzae 7P49H1]
gi|260582496|ref|ZP_05850287.1| ribosome-binding factor A [Haemophilus influenzae NT127]
gi|319896989|ref|YP_004135184.1| 30S ribosome binding factor [Haemophilus influenzae F3031]
gi|342904283|ref|ZP_08726084.1| Ribosome-binding factor A [Haemophilus haemolyticus M21621]
gi|373467297|ref|ZP_09558597.1| ribosome-binding factor A [Haemophilus sp. oral taxon 851 str.
F0397]
gi|378697511|ref|YP_005179469.1| 30s ribosome binding factor [Haemophilus influenzae 10810]
gi|386265780|ref|YP_005829272.1| Ribosome binding factor A [Haemophilus influenzae R2846]
gi|417840077|ref|ZP_12486231.1| Ribosome-binding factor A [Haemophilus haemolyticus M19107]
gi|419839104|ref|ZP_14362522.1| ribosome-binding factor A [Haemophilus haemolyticus HK386]
gi|81335423|sp|Q4QK42.1|RBFA_HAEI8 RecName: Full=Ribosome-binding factor A
gi|166218442|sp|A5UBU1.1|RBFA_HAEIE RecName: Full=Ribosome-binding factor A
gi|68058352|gb|AAX88605.1| ribosome-binding factor A [Haemophilus influenzae 86-028NP]
gi|144978858|gb|EDJ88581.1| ribosome-binding factor A [Haemophilus influenzae 22.1-21]
gi|144983708|gb|EDJ91168.1| ribosome-binding factor A [Haemophilus influenzae R3021]
gi|144986084|gb|EDJ92674.1| ribosome-binding factor A [Haemophilus influenzae 3655]
gi|145268342|gb|EDK08336.1| ribosome-binding factor A [Haemophilus influenzae PittAA]
gi|145268999|gb|EDK08953.1| ribosome-binding factor A [Haemophilus influenzae PittHH]
gi|145273874|gb|EDK13741.1| ribosome-binding factor A [Haemophilus influenzae 22.4-21]
gi|148716032|gb|ABQ98242.1| ribosome-binding factor A [Haemophilus influenzae PittEE]
gi|229810305|gb|EEP46024.1| ribosome-binding factor A [Haemophilus influenzae 7P49H1]
gi|229811939|gb|EEP47633.1| ribosome-binding factor A [Haemophilus influenzae 6P18H1]
gi|260094476|gb|EEW78373.1| ribosome-binding factor A [Haemophilus influenzae NT127]
gi|301170027|emb|CBW29631.1| 30s ribosome binding factor [Haemophilus influenzae 10810]
gi|309750835|gb|ADO80819.1| Ribosome binding factor A [Haemophilus influenzae R2866]
gi|309973016|gb|ADO96217.1| Ribosome binding factor A [Haemophilus influenzae R2846]
gi|317432493|emb|CBY80850.1| 30s ribosome binding factor [Haemophilus influenzae F3031]
gi|341950154|gb|EGT76745.1| Ribosome-binding factor A [Haemophilus haemolyticus M19107]
gi|341953523|gb|EGT80027.1| Ribosome-binding factor A [Haemophilus haemolyticus M21621]
gi|371759095|gb|EHO47846.1| ribosome-binding factor A [Haemophilus sp. oral taxon 851 str.
F0397]
gi|386909815|gb|EIJ74479.1| ribosome-binding factor A [Haemophilus haemolyticus HK386]
Length = 128
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 73/129 (56%), Gaps = 16/129 (12%)
Query: 68 RRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKV 127
+R VA++IQ+E++ +L + + + +G + T+SDVEVS+DL K+
Sbjct: 6 KRSDRVAQEIQKEIAVILQRE-------VKDPRIG-------MVTVSDVEVSSDLSYAKI 51
Query: 128 YVSVF--GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
+V+ D+ E + GL+ + Y+RS LG+ M+LR+ PEIRFI D+S G R+ +
Sbjct: 52 FVTFLFDHDETAIEQGMKGLEKASPYIRSLLGKAMRLRIVPEIRFIYDQSLVEGMRMSNL 111
Query: 186 LDRIKAEKE 194
+ + E E
Sbjct: 112 VTNVVREDE 120
>gi|422682159|ref|ZP_16740426.1| ribosome-binding factor A [Pseudomonas syringae pv. tabaci ATCC
11528]
gi|331011500|gb|EGH91556.1| ribosome-binding factor A [Pseudomonas syringae pv. tabaci str.
ATCC 11528]
Length = 138
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 78/142 (54%), Gaps = 20/142 (14%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + +G L TI+ V+VS D+ K++
Sbjct: 7 RTQRIGDQMQRELAQLIRRE-------IKDPRVG-------LVTITPVDVSRDVGHAKIF 52
Query: 129 VSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G D +E+A I L S A ++R QL R MKLR P++ F DES RG+ + A++
Sbjct: 53 MTVMGQDSAEEIAQTIKVLNSAAGFLRMQLAREMKLRSVPQLHFHYDESVVRGAHLSALI 112
Query: 187 DRIKAEKEAAKSKNKEQFESPD 208
+R A+ +++E SPD
Sbjct: 113 ERAVAQ----DGQHQEGSASPD 130
>gi|421258534|ref|ZP_15711572.1| ribosome-binding factor A, partial [Pasteurella multocida subsp.
multocida str. Anand1_cattle]
gi|401698444|gb|EJS90308.1| ribosome-binding factor A, partial [Pasteurella multocida subsp.
multocida str. Anand1_cattle]
Length = 141
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 70/123 (56%), Gaps = 19/123 (15%)
Query: 65 ANPRRVKM---VAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSAD 121
AN +R K VA++IQ+E++ +L + + + +G + T+SDVEVS+D
Sbjct: 25 ANGKRFKRSDRVAQEIQKEIAVILQRE-------VKDPRIG-------MVTVSDVEVSSD 70
Query: 122 LQVVKVYVSVF--GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERG 179
L KV+V+ D+ + + GL+ + Y+RS LG+ M+LR+ PEIRFI D S G
Sbjct: 71 LAYAKVFVTFLFDNDESAIDAGMKGLEKASPYIRSLLGKAMRLRIVPEIRFIYDRSLIEG 130
Query: 180 SRV 182
R+
Sbjct: 131 MRM 133
>gi|346306479|ref|ZP_08848635.1| ribosome-binding factor A [Dorea formicigenerans 4_6_53AFAA]
gi|345897853|gb|EGX67750.1| ribosome-binding factor A [Dorea formicigenerans 4_6_53AFAA]
Length = 129
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 65/117 (55%), Gaps = 13/117 (11%)
Query: 73 VAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVF 132
V ++QRELS+++ L D ++ T++ VEV+ DL+ K Y+SV
Sbjct: 11 VNTEVQRELSEII------------RRGL-KDPRVAPWTSVVAVEVAPDLKTCKAYISVL 57
Query: 133 GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRI 189
GD + +E I GL+S ++R +L R + +R TPEI+FI D+S E G + +D +
Sbjct: 58 GDVKAQEDTIKGLRSAEGFIRRELARTLNMRNTPEIQFILDQSIEYGVNMSKKIDEV 114
>gi|260550523|ref|ZP_05824733.1| ribosome-binding factor A [Acinetobacter sp. RUH2624]
gi|424057167|ref|ZP_17794684.1| ribosome-binding factor A [Acinetobacter nosocomialis Ab22222]
gi|425742106|ref|ZP_18860228.1| ribosome-binding factor A [Acinetobacter baumannii WC-487]
gi|445437652|ref|ZP_21441201.1| ribosome-binding factor A [Acinetobacter baumannii OIFC021]
gi|260406438|gb|EEW99920.1| ribosome-binding factor A [Acinetobacter sp. RUH2624]
gi|407440700|gb|EKF47217.1| ribosome-binding factor A [Acinetobacter nosocomialis Ab22222]
gi|425489007|gb|EKU55330.1| ribosome-binding factor A [Acinetobacter baumannii WC-487]
gi|444753688|gb|ELW78327.1| ribosome-binding factor A [Acinetobacter baumannii OIFC021]
Length = 133
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 79/146 (54%), Gaps = 20/146 (13%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA +R+K +A +QRELSD++ + L + LG L TIS V+VSAD+
Sbjct: 1 MAGSQRLKRMADSVQRELSDLIRQE-------LKDPRLGG------LVTISAVKVSADMG 47
Query: 124 VVKVYVSVFGDDRGKEVAIAG-------LKSKAKYVRSQLGRRMKLRLTPEIRFIEDESF 176
+VYV+V G + G E + A L + ++R +L RR+K R+TP +RF D++
Sbjct: 48 YAEVYVTVMGRELGDEQSEAANKETLDVLNKASGFLRHELSRRIKTRITPRLRFHYDKTN 107
Query: 177 ERGSRVIAILDRIKAEKEAAKSKNKE 202
G+ + ++++ + KS ++E
Sbjct: 108 AYGNYMFGLIEKAVQDLPERKSDDEE 133
>gi|119774099|ref|YP_926839.1| ribosome-binding factor A [Shewanella amazonensis SB2B]
gi|166219403|sp|A1S463.1|RBFA_SHEAM RecName: Full=Ribosome-binding factor A
gi|119766599|gb|ABL99169.1| ribosome-binding factor A [Shewanella amazonensis SB2B]
Length = 137
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 73/131 (55%), Gaps = 15/131 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + +Q+Q+EL+ +L D + + +G + T++DV+VS DL KVY
Sbjct: 7 RTRRIGQQLQQELAFVLQRD-------MKDPRIG-------MVTVNDVDVSRDLSHAKVY 52
Query: 129 VSVFGDD-RGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
V+ F +D + E +A L + A Y R+ + RMKLR+ PE+RFI D S G R+ ++
Sbjct: 53 VTFFEEDPQVIEAKLAALNTAAPYARTLVAGRMKLRVMPELRFIYDASLVEGMRMSNLVS 112
Query: 188 RIKAEKEAAKS 198
++ + EA K
Sbjct: 113 KVIRDDEAKKG 123
>gi|260914252|ref|ZP_05920725.1| ribosome-binding factor A [Pasteurella dagmatis ATCC 43325]
gi|260631885|gb|EEX50063.1| ribosome-binding factor A [Pasteurella dagmatis ATCC 43325]
Length = 140
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 65/115 (56%), Gaps = 6/115 (5%)
Query: 72 MVAKQIQREL--SDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYV 129
M KQ+ RE SD + + + AV+ + + R + T+SDVEVS+DL KV+V
Sbjct: 1 MKEKQMAREFKRSDRVAQEIQKEIAVILQREVKDPRI--GMVTVSDVEVSSDLAYAKVFV 58
Query: 130 SVF--GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
+ D+ E + GL+ + Y+RS LG+ M+LR+ PEIRFI D S G R+
Sbjct: 59 TFLFDNDESAIEAGMKGLEKASPYIRSLLGKAMRLRIVPEIRFIYDRSLIEGMRM 113
>gi|16273202|ref|NP_439440.1| ribosome-binding factor A [Haemophilus influenzae Rd KW20]
gi|260581410|ref|ZP_05849224.1| ribosome-binding factor A [Haemophilus influenzae RdAW]
gi|1172847|sp|P45141.1|RBFA_HAEIN RecName: Full=Ribosome-binding factor A
gi|33357151|pdb|1JOS|A Chain A, Ribosome Binding Factor A(Rbfa)
gi|1574747|gb|AAC22937.1| ribosome binding factor A (rbfA) [Haemophilus influenzae Rd KW20]
gi|260091952|gb|EEW75901.1| ribosome-binding factor A [Haemophilus influenzae RdAW]
Length = 128
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 73/129 (56%), Gaps = 16/129 (12%)
Query: 68 RRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKV 127
+R VA++IQ+E++ +L + + + +G + T+SDVEVS+DL K+
Sbjct: 6 KRSDRVAQEIQKEIAVILQRE-------VKDPRIG-------MVTVSDVEVSSDLSYAKI 51
Query: 128 YVSVF--GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
+V+ D+ E + GL+ + Y+RS LG+ M+LR+ PEIRFI D+S G R+ +
Sbjct: 52 FVTFLFDHDEMAIEQGMKGLEKASPYIRSLLGKAMRLRIVPEIRFIYDQSLVEGMRMSNL 111
Query: 186 LDRIKAEKE 194
+ + E E
Sbjct: 112 VTNVVREDE 120
>gi|329123371|ref|ZP_08251935.1| ribosome-binding factor A [Haemophilus aegyptius ATCC 11116]
gi|327470953|gb|EGF16408.1| ribosome-binding factor A [Haemophilus aegyptius ATCC 11116]
Length = 128
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 74/129 (57%), Gaps = 16/129 (12%)
Query: 68 RRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKV 127
+R +A++IQ+E++ +L + + + +G + T+SDVEVS+DL K+
Sbjct: 6 KRSDRIAQEIQKEIAVILQRE-------VKDPRIG-------MVTVSDVEVSSDLSYAKI 51
Query: 128 YVSVF--GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
+V+ D+ E ++ GL+ + Y+RS LG+ M+LR+ PEIRFI D+S G R+ +
Sbjct: 52 FVTFLFDHDETAIEQSMKGLEKASPYIRSLLGKAMRLRIVPEIRFIYDQSLVEGMRMSNL 111
Query: 186 LDRIKAEKE 194
+ + E E
Sbjct: 112 VTNVVREDE 120
>gi|167630360|ref|YP_001680859.1| ribosome-binding factor a [Heliobacterium modesticaldum Ice1]
gi|238687990|sp|B0THR5.1|RBFA_HELMI RecName: Full=Ribosome-binding factor A
gi|167593100|gb|ABZ84848.1| ribosome-binding factor a [Heliobacterium modesticaldum Ice1]
Length = 121
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 75/132 (56%), Gaps = 15/132 (11%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA R +M A++I+REL+ +L + + + LG +I+ VEVS D +
Sbjct: 1 MAGHRMARM-AEEIKRELARLLRDE-------MKDPRLG-------FVSITAVEVSGDGR 45
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
KVYVSV GD+ ++ + A LK ++R++L + +++R PE+ F+ D S ERG+R+
Sbjct: 46 HAKVYVSVMGDESARDNSQAALKQATGFLRTELSKSLRVRYVPELVFLSDLSIERGTRIA 105
Query: 184 AILDRIKAEKEA 195
+L ++ +A
Sbjct: 106 RLLTEMENHDDA 117
>gi|410089665|ref|ZP_11286278.1| ribosome-binding factor A [Pseudomonas viridiflava UASWS0038]
gi|409763052|gb|EKN48040.1| ribosome-binding factor A [Pseudomonas viridiflava UASWS0038]
Length = 138
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 78/146 (53%), Gaps = 16/146 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + +G L TI+ V+VS D+ K++
Sbjct: 7 RTQRIGDQMQRELAQLIRRE-------IKDPRVG-------LVTITAVDVSRDVGHAKIF 52
Query: 129 VSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G D +E+A I L S A ++R QL R MKLR P++ F DES RG+ + A++
Sbjct: 53 MTVMGQDSAEEIAQSIKVLNSAAGFLRMQLAREMKLRSVPQLHFHYDESVVRGAHLSALI 112
Query: 187 DRIKAEKEAAKSKNKEQFESPDLPED 212
+R AE + + Q P+ E+
Sbjct: 113 ERAVAEDGQHQEGSAPQGVKPESTEE 138
>gi|348026647|ref|YP_004766452.1| ribosome-binding factor A [Megasphaera elsdenii DSM 20460]
gi|341822701|emb|CCC73625.1| ribosome-binding factor A [Megasphaera elsdenii DSM 20460]
Length = 115
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 66/118 (55%), Gaps = 14/118 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
RV+ + + I++E+S MLL + L + +G T++D ++ DL+ VY
Sbjct: 5 RVRKIQEFIKQEVSKMLLNE-------LKDPRIG-------FVTVTDARITGDLRDATVY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
VS+FG D K+ + LK Y+R+++G+R+ +R +P I F ED S + G ++ IL
Sbjct: 51 VSLFGSDEAKQETLKALKRATGYIRTEVGKRLGIRYSPTIVFKEDTSLDYGMKIDKIL 108
>gi|167746754|ref|ZP_02418881.1| hypothetical protein ANACAC_01466 [Anaerostipes caccae DSM 14662]
gi|167653714|gb|EDR97843.1| ribosome-binding factor A [Anaerostipes caccae DSM 14662]
Length = 116
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 48/76 (63%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLR 163
D ++ +T++ D V++DL+ K Y+SV GD + KE + GL+S Y+R +L + LR
Sbjct: 29 DPRIAPMTSVVDAVVTSDLKQCKAYISVLGDQKAKEDTLNGLRSAVGYIRRELAHSINLR 88
Query: 164 LTPEIRFIEDESFERG 179
TPEI FI D+S E G
Sbjct: 89 NTPEITFILDDSIEYG 104
>gi|394988385|ref|ZP_10381221.1| hypothetical protein SCD_00786 [Sulfuricella denitrificans skB26]
gi|393792381|dbj|GAB70860.1| hypothetical protein SCD_00786 [Sulfuricella denitrificans skB26]
Length = 124
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 64/119 (53%), Gaps = 14/119 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R VA+QIQREL+D++ + + + +G + T++ VEV+ D KVY
Sbjct: 7 RTSRVAEQIQRELADLIQME-------VKDPRVG-------MVTLTGVEVTPDYAHAKVY 52
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
+ A AGL+ A ++RSQL RMKLR+ P++ FI D S E G R+ ++D
Sbjct: 53 FTTMKAAEQAPKAQAGLEHAAGFLRSQLAHRMKLRIMPQLHFIYDTSVEHGVRLSQLID 111
>gi|417842724|ref|ZP_12488805.1| Ribosome-binding factor A [Haemophilus haemolyticus M21127]
gi|341951283|gb|EGT77860.1| Ribosome-binding factor A [Haemophilus haemolyticus M21127]
Length = 128
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 73/129 (56%), Gaps = 16/129 (12%)
Query: 68 RRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKV 127
+R VA++IQ+E++ +L + + + +G + T+SDVEVS+DL K+
Sbjct: 6 KRSDRVAQEIQKEIAVILQRE-------VKDPRIG-------MVTVSDVEVSSDLSYAKI 51
Query: 128 YVSVFGD--DRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
+V+ D + E + GL+ + Y+RS LG+ M+LR+ PEIRFI D+S G R+ +
Sbjct: 52 FVTFLFDYDETAIEQGMKGLEKASPYIRSLLGKAMRLRIVPEIRFIYDQSLVEGMRMSNL 111
Query: 186 LDRIKAEKE 194
+ + E E
Sbjct: 112 VTNVVREDE 120
>gi|317471567|ref|ZP_07930914.1| ribosome-binding protein A [Anaerostipes sp. 3_2_56FAA]
gi|316900970|gb|EFV22937.1| ribosome-binding protein A [Anaerostipes sp. 3_2_56FAA]
Length = 79
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 45/70 (64%)
Query: 110 LTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIR 169
+T++ D V++DL+ K Y+SV GD + KE + GL+S Y+R +L + LR TPEI
Sbjct: 1 MTSVVDAVVTSDLKQCKAYISVLGDQKAKEDTLNGLRSAVGYIRRELAHSINLRNTPEIT 60
Query: 170 FIEDESFERG 179
FI D+S E G
Sbjct: 61 FILDDSIEYG 70
>gi|421607229|ref|ZP_16048475.1| ribosome-binding factor A [Staphylococcus epidermidis AU12-03]
gi|406657021|gb|EKC83414.1| ribosome-binding factor A [Staphylococcus epidermidis AU12-03]
Length = 116
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 66/117 (56%), Gaps = 14/117 (11%)
Query: 66 NPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
N R + V +Q+++E+ D ++ +KV P A TI+DVE++ DL
Sbjct: 2 NNIRAERVGEQMKQEIMD-IVNNKVKD----PRAGF---------LTITDVELTNDLSQA 47
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
KVY++V G+D+ + L +++S+LG RM+LR+ PE+ F DES E G+++
Sbjct: 48 KVYLTVLGNDKEVDNTFKALHKATGFIKSELGSRMRLRIIPELTFEYDESIEYGNKI 104
>gi|425063442|ref|ZP_18466567.1| Ribosome-binding factor A [Pasteurella multocida subsp. gallicida
X73]
gi|425065619|ref|ZP_18468739.1| Ribosome-binding factor A [Pasteurella multocida subsp. gallicida
P1059]
gi|404383005|gb|EJZ79462.1| Ribosome-binding factor A [Pasteurella multocida subsp. gallicida
X73]
gi|404383995|gb|EJZ80440.1| Ribosome-binding factor A [Pasteurella multocida subsp. gallicida
P1059]
Length = 164
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 72/130 (55%), Gaps = 16/130 (12%)
Query: 68 RRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKV 127
+R VA++IQ+E++ +L + + + +G + T+SDVEVS+DL KV
Sbjct: 38 KRSDRVAQEIQKEIAVILQRE-------VKDPRIG-------MVTVSDVEVSSDLAYAKV 83
Query: 128 YVSVF--GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
+V+ D+ + + GL+ + Y+RS LG+ M+LR+ PEIRFI D S G R+ +
Sbjct: 84 FVTFLFDNDESAIDAGMKGLEKASPYIRSLLGKAMRLRIVPEIRFIYDRSLIEGMRMSNL 143
Query: 186 LDRIKAEKEA 195
+ + E A
Sbjct: 144 VSNVIREDNA 153
>gi|383754442|ref|YP_005433345.1| putative ribosome-binding factor A [Selenomonas ruminantium subsp.
lactilytica TAM6421]
gi|381366494|dbj|BAL83322.1| putative ribosome-binding factor A [Selenomonas ruminantium subsp.
lactilytica TAM6421]
Length = 126
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 79/132 (59%), Gaps = 14/132 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
RV+ V + +++E+S ++L + L + +G T++ VE + DL+ KV+
Sbjct: 5 RVEKVQELMKQEISQIILRE-------LKDPRIG-------FVTVTSVECTGDLREAKVF 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VS+ G ++ + +GL S ++R ++G+R++LR+TPE+ F D+S + + + +L +
Sbjct: 51 VSLMGSEKQVKDCWSGLNSSLGFIRREIGKRIRLRVTPELSFALDKSLDYSAHIQELLLK 110
Query: 189 IKAEKEAAKSKN 200
IKAE+EA +++
Sbjct: 111 IKAEEEAKATES 122
>gi|389577355|ref|ZP_10167383.1| ribosome-binding factor A [Eubacterium cellulosolvens 6]
gi|389312840|gb|EIM57773.1| ribosome-binding factor A [Eubacterium cellulosolvens 6]
Length = 129
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 55/89 (61%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLR 163
D ++ +T++++ V+ DL+ KV +SV GD++ K + GL+S AK++R +L R+ LR
Sbjct: 29 DPRIAMMTSVTEAIVAPDLKTCKVMISVLGDEKAKSDTMTGLRSSAKFIRHELAVRLNLR 88
Query: 164 LTPEIRFIEDESFERGSRVIAILDRIKAE 192
TPE+ F DES E G + +D + E
Sbjct: 89 NTPELTFRLDESIEYGVNMSKRIDEVMEE 117
>gi|146297074|ref|YP_001180845.1| ribosome-binding factor A [Caldicellulosiruptor saccharolyticus DSM
8903]
gi|166218427|sp|A4XL69.1|RBFA_CALS8 RecName: Full=Ribosome-binding factor A
gi|145410650|gb|ABP67654.1| ribosome-binding factor A [Caldicellulosiruptor saccharolyticus DSM
8903]
Length = 135
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 78/138 (56%), Gaps = 13/138 (9%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R VA++I++E+SD++ + L R + L +I V +S DL+ KV+
Sbjct: 5 RADRVAEEIKKEISDII------------QHELKDPRICAELISIVKVNMSKDLRHAKVF 52
Query: 129 VSVFGDDRGKEVA-IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
VS+F +R + + L++ Y+R ++ RR+ LR +PEI F D+S E G+R+ IL+
Sbjct: 53 VSIFDKNRENITSTMKALENAKPYIRREISRRINLRFSPEISFELDDSIEYGARISQILN 112
Query: 188 RIKAEKEAAKSKNKEQFE 205
++ K+ + K++++ E
Sbjct: 113 QLNIAKDEEEEKSQDESE 130
>gi|340354952|ref|ZP_08677648.1| ribosome-binding factor A [Sporosarcina newyorkensis 2681]
gi|339622966|gb|EGQ27477.1| ribosome-binding factor A [Sporosarcina newyorkensis 2681]
Length = 116
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 71/129 (55%), Gaps = 20/129 (15%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R +A+Q+++EL D++ L D + F T++ ++V+ DLQ
Sbjct: 4 RANRIAEQMKKELGDIIGQKLKDPRIGFV-----------------TVTGIDVTGDLQQA 46
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
KV++SV G + +E + GL ++R+++G+R++LR TPEI F DES G+ + ++
Sbjct: 47 KVFISVLGTAKEREDTLIGLSKAKGFIRTEIGQRIRLRKTPEIEFEMDESVAYGNHIESL 106
Query: 186 LDRIKAEKE 194
+ ++ E E
Sbjct: 107 IRQVNDENE 115
>gi|242242553|ref|ZP_04796998.1| ribosome-binding factor A [Staphylococcus epidermidis W23144]
gi|242233980|gb|EES36292.1| ribosome-binding factor A [Staphylococcus epidermidis W23144]
Length = 127
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 66/119 (55%), Gaps = 14/119 (11%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
M N R + V +Q+++E+ D ++ +KV V TI+DVE++ DL
Sbjct: 11 MMNNIRAERVGEQMKQEIMD-IVNNKVKDPRV-------------GFLTITDVELTNDLS 56
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
KVY++V G+D+ + L +++S+LG RM+LR+ PE+ F DES E G+++
Sbjct: 57 QAKVYLTVLGNDKEVDNTFKALHKATGFIKSELGSRMRLRIIPELTFEYDESIEYGNKI 115
>gi|402701798|ref|ZP_10849777.1| ribosome-binding factor A [Pseudomonas fragi A22]
Length = 133
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 71/126 (56%), Gaps = 16/126 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + +G L TI+ VEVS D+ K++
Sbjct: 7 RTQRIGDQMQRELAQLIRRE-------VKDPRVG-------LVTITAVEVSRDVGHAKIF 52
Query: 129 VSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G D +++A + L S A ++R QL R MKLR P++ F DES RG+ + A++
Sbjct: 53 ITVMGQDNAEDIAQTVKVLNSAAGFLRMQLAREMKLRSVPQLHFHYDESVVRGAHLSALI 112
Query: 187 DRIKAE 192
+R AE
Sbjct: 113 ERAVAE 118
>gi|345874254|ref|ZP_08826068.1| hypothetical protein l11_01470 [Neisseria weaveri LMG 5135]
gi|343970527|gb|EGV38700.1| hypothetical protein l11_01470 [Neisseria weaveri LMG 5135]
Length = 105
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Query: 108 SSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPE 167
+ TI+DVEV+ D VY +V DD +EV L+ ++RS+L +R+KL TPE
Sbjct: 17 AGFITINDVEVTRDYSHATVYYTVL-DDATREVTAEALEHAKGFLRSELSKRIKLFRTPE 75
Query: 168 IRFIEDESFERGSRVIAILDRIKAEK 193
+ FI DES ERG + ++D++ AEK
Sbjct: 76 LHFIYDESLERGMSISHLIDQVAAEK 101
>gi|237798564|ref|ZP_04587025.1| ribosome-binding factor A [Pseudomonas syringae pv. oryzae str.
1_6]
gi|331021417|gb|EGI01474.1| ribosome-binding factor A [Pseudomonas syringae pv. oryzae str.
1_6]
Length = 138
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 78/142 (54%), Gaps = 20/142 (14%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + +G L TI+ V+VS D+ K++
Sbjct: 7 RTQRIGDQMQRELAQLIRRE-------IKDPRVG-------LVTITAVDVSRDVGHAKIF 52
Query: 129 VSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G D +++A I L S A ++R QL R MKLR P++ F DES RG+ + A++
Sbjct: 53 MTVMGQDNAEDIAQTIKVLNSAAGFLRMQLAREMKLRSVPQLHFHYDESVVRGAHLSALI 112
Query: 187 DRIKAEKEAAKSKNKEQFESPD 208
+R AE +++E SPD
Sbjct: 113 ERAVAE----DGQHQEGPASPD 130
>gi|251810701|ref|ZP_04825174.1| ribosome-binding factor A [Staphylococcus epidermidis BCM-HMP0060]
gi|293366766|ref|ZP_06613442.1| ribosome-binding factor A [Staphylococcus epidermidis
M23864:W2(grey)]
gi|251805861|gb|EES58518.1| ribosome-binding factor A [Staphylococcus epidermidis BCM-HMP0060]
gi|291319067|gb|EFE59437.1| ribosome-binding factor A [Staphylococcus epidermidis
M23864:W2(grey)]
Length = 127
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 66/119 (55%), Gaps = 14/119 (11%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
M N R + V +Q+++E+ D ++ +KV V TI+DVE++ DL
Sbjct: 11 MMNNIRAERVGEQMKQEIMD-IVNNKVKDPRV-------------GFLTITDVELTNDLS 56
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
KVY++V G+D+ + L +++S+LG RM+LR+ PE+ F DES E G+++
Sbjct: 57 QAKVYLTVLGNDKEVDNTFKALHKATGFIKSELGSRMRLRIIPELTFEYDESIEYGNKI 115
>gi|398875197|ref|ZP_10630376.1| ribosome-binding factor A [Pseudomonas sp. GM67]
gi|398881611|ref|ZP_10636599.1| ribosome-binding factor A [Pseudomonas sp. GM60]
gi|398201024|gb|EJM87916.1| ribosome-binding factor A [Pseudomonas sp. GM60]
gi|398208317|gb|EJM95052.1| ribosome-binding factor A [Pseudomonas sp. GM67]
Length = 133
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 71/126 (56%), Gaps = 16/126 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + +G L TI+ VEVS D+ K++
Sbjct: 7 RTQRIGDQMQRELAQLIRRE-------VKDPRVG-------LVTITAVEVSRDVGHAKIF 52
Query: 129 VSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G D +++A I L S A ++R QL R MKLR P++ F DES RG+ + A++
Sbjct: 53 ITVMGQDSAEDIAQSIKVLNSAAGFLRMQLAREMKLRSVPQLHFHYDESVVRGAHLSALI 112
Query: 187 DRIKAE 192
+R AE
Sbjct: 113 ERAVAE 118
>gi|374263791|ref|ZP_09622338.1| ribosome-binding factor A [Legionella drancourtii LLAP12]
gi|363535913|gb|EHL29360.1| ribosome-binding factor A [Legionella drancourtii LLAP12]
Length = 123
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 68/126 (53%), Gaps = 15/126 (11%)
Query: 66 NPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
N +R +A+ IQR+L+ ++P+ D L+ TIS V+V+ADL
Sbjct: 4 NFKRTDRIAEMIQRKLAQ-----------IIPQEV--KDPRLNGFVTISAVKVAADLGHA 50
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
K+Y +V D K++A L + A Y+RS L R + LR P++ FI DES E G R+ +
Sbjct: 51 KIYFTVLNAD--KKLAATILNAAASYLRSALARSITLRTVPQLHFIYDESIEYGQRLSRL 108
Query: 186 LDRIKA 191
+D + +
Sbjct: 109 IDDVNS 114
>gi|440722190|ref|ZP_20902573.1| ribosome-binding factor A [Pseudomonas syringae BRIP34876]
gi|440725902|ref|ZP_20906162.1| ribosome-binding factor A [Pseudomonas syringae BRIP34881]
gi|443642364|ref|ZP_21126214.1| Ribosome-binding factor A [Pseudomonas syringae pv. syringae B64]
gi|440361719|gb|ELP98936.1| ribosome-binding factor A [Pseudomonas syringae BRIP34876]
gi|440367789|gb|ELQ04844.1| ribosome-binding factor A [Pseudomonas syringae BRIP34881]
gi|443282381|gb|ELS41386.1| Ribosome-binding factor A [Pseudomonas syringae pv. syringae B64]
Length = 138
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 78/142 (54%), Gaps = 20/142 (14%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + +G L TI+ V+VS D+ K++
Sbjct: 7 RTQRIGDQMQRELAQLIRRE-------IKDPRVG-------LVTITAVDVSRDVGHAKIF 52
Query: 129 VSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G D +E+A I L + A ++R QL R MKLR P++ F DES RG+ + A++
Sbjct: 53 MTVMGQDSAEEIAQTIKVLNAAAGFLRMQLAREMKLRSVPQLHFHYDESVVRGAHLSALI 112
Query: 187 DRIKAEKEAAKSKNKEQFESPD 208
+R AE +++E SPD
Sbjct: 113 ERAVAE----DGQHQEGPASPD 130
>gi|359298906|ref|ZP_09184745.1| ribosome-binding factor A [Haemophilus [parainfluenzae] CCUG 13788]
gi|402305566|ref|ZP_10824625.1| ribosome-binding factor A [Haemophilus sputorum HK 2154]
gi|400376679|gb|EJP29566.1| ribosome-binding factor A [Haemophilus sputorum HK 2154]
Length = 126
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
Query: 109 SLTTISDVEVSADLQVVKVYVS-VFGDDRGK-EVAIAGLKSKAKYVRSQLGRRMKLRLTP 166
+ T+SDVEVS DL K++V+ +F D+ E +AGL+ + Y+RS +G+ M+LR+ P
Sbjct: 33 GMVTVSDVEVSRDLAYAKIFVTFLFDSDQAAIEQGMAGLEKASPYIRSLVGKAMRLRIVP 92
Query: 167 EIRFIEDESFERGSRVIAILDRIKAEKEA 195
E+RFI DES G R+ ++ + + EA
Sbjct: 93 ELRFIYDESLVEGMRMSNLVSNVIRQDEA 121
>gi|166030872|ref|ZP_02233701.1| hypothetical protein DORFOR_00552 [Dorea formicigenerans ATCC
27755]
gi|166029139|gb|EDR47896.1| ribosome-binding factor A [Dorea formicigenerans ATCC 27755]
Length = 119
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 53/86 (61%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLR 163
D ++ T++ VEV+ DL+ K Y+SV GD + +E I GL+S ++R +L R + +R
Sbjct: 19 DPRVAPWTSVVAVEVAPDLKTCKAYISVLGDVKAQEDTIKGLRSAEGFIRRELARTLNMR 78
Query: 164 LTPEIRFIEDESFERGSRVIAILDRI 189
TPEI+FI D+S E G + +D +
Sbjct: 79 NTPEIQFILDQSIEYGVNMSKKIDEV 104
>gi|197121575|ref|YP_002133526.1| ribosome-binding factor A [Anaeromyxobacter sp. K]
gi|238689882|sp|B4UHG2.1|RBFA_ANASK RecName: Full=Ribosome-binding factor A
gi|196171424|gb|ACG72397.1| ribosome-binding factor A [Anaeromyxobacter sp. K]
Length = 138
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 58/92 (63%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLR 163
D ++ T++ ++S DL+ VYVS+ GD+R ++ AGL++ A +++ ++ R ++LR
Sbjct: 28 DPRITGFVTVTGSKMSPDLKEATVYVSIHGDERVRKDTFAGLQAAAGFLQREVSRALRLR 87
Query: 164 LTPEIRFIEDESFERGSRVIAILDRIKAEKEA 195
TP +RF+ DES RG R+ +L + + +A
Sbjct: 88 NTPHLRFVYDESVARGDRIERLLREARTQGQA 119
>gi|422668728|ref|ZP_16728582.1| ribosome-binding factor A [Pseudomonas syringae pv. aptata str. DSM
50252]
gi|330981091|gb|EGH79194.1| ribosome-binding factor A [Pseudomonas syringae pv. aptata str. DSM
50252]
Length = 138
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 78/142 (54%), Gaps = 20/142 (14%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + +G L TI+ V+VS D+ K++
Sbjct: 7 RTQRIGDQMQRELAQLIRRE-------IKDPRVG-------LVTITAVDVSRDVGHAKIF 52
Query: 129 VSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G D +E+A I L + A ++R QL R MKLR P++ F DES RG+ + A++
Sbjct: 53 MTVMGQDSAEEIAQTIKVLNAAAGFLRMQLAREMKLRSVPQLHFHYDESVVRGAHLSALI 112
Query: 187 DRIKAEKEAAKSKNKEQFESPD 208
+R AE +++E SPD
Sbjct: 113 ERAVAE----DGQHQEGPASPD 130
>gi|217967597|ref|YP_002353103.1| ribosome-binding factor A [Dictyoglomus turgidum DSM 6724]
gi|217336696|gb|ACK42489.1| ribosome-binding factor A [Dictyoglomus turgidum DSM 6724]
Length = 127
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 56/88 (63%)
Query: 107 LSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTP 166
+SS I+ V++S DL+ +YVSV+G + K+ + GL+S ++RS+LG+ +++R P
Sbjct: 36 ISSFLVITGVKMSKDLRYAHIYVSVYGSEEEKKQTMKGLESAKGFIRSELGKDLRIRFVP 95
Query: 167 EIRFIEDESFERGSRVIAILDRIKAEKE 194
EI F D+S E+G R++ L + E E
Sbjct: 96 EIFFELDDSLEKGDRILRKLKELGLEDE 123
>gi|378774462|ref|YP_005176705.1| ribosome-binding factor A [Pasteurella multocida 36950]
gi|386834097|ref|YP_006239412.1| ribosome-binding factor A [Pasteurella multocida subsp. multocida
str. 3480]
gi|356597010|gb|AET15736.1| ribosome-binding factor A [Pasteurella multocida 36950]
gi|385200798|gb|AFI45653.1| ribosome-binding factor A [Pasteurella multocida subsp. multocida
str. 3480]
Length = 164
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 72/130 (55%), Gaps = 16/130 (12%)
Query: 68 RRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKV 127
+R VA++IQ+E++ +L + + + +G + T+SDVEVS+DL KV
Sbjct: 38 KRSDRVAQEIQKEIAVILQRE-------VKDPRIG-------MVTVSDVEVSSDLAYAKV 83
Query: 128 YVSVF--GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
+V+ D+ + + GL+ + Y+RS LG+ M+LR+ PEIRFI D S G R+ +
Sbjct: 84 FVTFLFDNDESAIDAGMKGLEKASPYIRSLLGKAMRLRIVPEIRFIYDRSLIEGMRMSNL 143
Query: 186 LDRIKAEKEA 195
+ + E A
Sbjct: 144 VSNVIREDNA 153
>gi|365839145|ref|ZP_09380393.1| ribosome-binding factor A [Anaeroglobus geminatus F0357]
gi|364565541|gb|EHM43262.1| ribosome-binding factor A [Anaeroglobus geminatus F0357]
Length = 115
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 70/121 (57%), Gaps = 14/121 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R++ + + I++E+S ++L + L + LG T++DV ++ DL+ VY
Sbjct: 5 RIRKIQEFIKQEVSRIILQE-------LKDPRLG-------FVTVTDVRITGDLREATVY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VS+FG D K+ +A L ++RS++G+R+ +R +P+I F ED+S + G ++ IL
Sbjct: 51 VSLFGSDEEKKNTLAALAKANGFIRSEVGKRLGIRYSPQIGFKEDQSLDYGMKIEKILHT 110
Query: 189 I 189
I
Sbjct: 111 I 111
>gi|300854502|ref|YP_003779486.1| ribosome-binding factor A [Clostridium ljungdahlii DSM 13528]
gi|300434617|gb|ADK14384.1| ribosome-binding factor A [Clostridium ljungdahlii DSM 13528]
Length = 121
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 74/130 (56%), Gaps = 14/130 (10%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
M N R + + +++++E+S+++ +D D ++++ +++ V+V+ D +
Sbjct: 1 MTNYRSGR-INEEMKKEISNIIRSDI-------------KDPRVTAMVSVTKVDVTKDQK 46
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
KVYVSV+G+ + KE L++ A ++R ++G R+KLR TPEI +D + E G +
Sbjct: 47 YAKVYVSVYGEGKSKEDTFEALRNSAGFIRREVGHRVKLRNTPEIIIEQDNTIEYGMHID 106
Query: 184 AILDRIKAEK 193
IL IK K
Sbjct: 107 KILQEIKENK 116
>gi|226736651|sp|B8CKH4.1|RBFA_SHEPW RecName: Full=Ribosome-binding factor A
gi|212555559|gb|ACJ28013.1| Ribosome-binding factor A [Shewanella piezotolerans WP3]
Length = 142
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 75/132 (56%), Gaps = 15/132 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + +A+Q+Q+EL+ +L D + + +G T++DV+VS DL KV+
Sbjct: 7 RTRRIAQQLQQELAVVLQRD-------MKDPRIG-------FVTVNDVDVSRDLSYAKVF 52
Query: 129 VSVFGDD-RGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
V+ F +D + + + L + A Y+RS + RMKLR+ PE+RFI D S G R+ ++
Sbjct: 53 VTFFEEDEKLVQEKVEALDAAAGYIRSLVAGRMKLRVMPELRFIYDSSLVEGMRMSNLVS 112
Query: 188 RIKAEKEAAKSK 199
R+ ++ EA + +
Sbjct: 113 RVISDDEAKQQE 124
>gi|54295601|ref|YP_128016.1| ribosome-binding factor A [Legionella pneumophila str. Lens]
gi|296108415|ref|YP_003620116.1| ribosome-binding factor A [Legionella pneumophila 2300/99 Alcoy]
gi|61214769|sp|Q5WT37.1|RBFA_LEGPL RecName: Full=Ribosome-binding factor A
gi|53755433|emb|CAH16929.1| Ribosome-binding factor A [Legionella pneumophila str. Lens]
gi|295650317|gb|ADG26164.1| ribosome-binding factor A [Legionella pneumophila 2300/99 Alcoy]
Length = 123
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 67/135 (49%), Gaps = 15/135 (11%)
Query: 66 NPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
N +R +A+ IQR+L+ ++P+ D L TIS V+V+ADL
Sbjct: 4 NFKRTDRIAEMIQRKLA-----------LIIPQEI--KDPRLKGFVTISAVKVAADLGHA 50
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
K+Y +V +D K V L A Y+RS L R + LR P++ FI DES E G R+ +
Sbjct: 51 KIYFTVLNED--KSVVTNILNGAASYLRSALARSITLRTVPQLHFIYDESIEYGQRLSRL 108
Query: 186 LDRIKAEKEAAKSKN 200
+D + ++ N
Sbjct: 109 IDEVNPPDSSSDDNN 123
>gi|30248766|ref|NP_840836.1| ribosome-binding factor A [Nitrosomonas europaea ATCC 19718]
gi|34098452|sp|Q82WC9.1|RBFA_NITEU RecName: Full=Ribosome-binding factor A
gi|30180361|emb|CAD84673.1| Ribosome-binding factor A [Nitrosomonas europaea ATCC 19718]
Length = 117
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 68/119 (57%), Gaps = 14/119 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R VA QIQREL+ +L+ ++++ V + T++ VEV+ D KV+
Sbjct: 7 RTVRVADQIQRELA-LLIQNEIMDPRV-------------GMVTLTGVEVTRDYAYAKVF 52
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
+ G D ++ GLK A ++RSQL +++LR+ P+++F+ DES ERG ++ ++D
Sbjct: 53 YTTLGGDENIQLVEEGLKHAAGFLRSQLAGKIRLRVVPQLQFVYDESVERGMKLSRLID 111
>gi|52842970|ref|YP_096769.1| ribosome-binding factor A [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|54298755|ref|YP_125124.1| ribosome-binding factor A [Legionella pneumophila str. Paris]
gi|148361085|ref|YP_001252292.1| ribosome binding factor A [Legionella pneumophila str. Corby]
gi|378778655|ref|YP_005187097.1| ribosome binding factor A [Legionella pneumophila subsp.
pneumophila ATCC 43290]
gi|397665365|ref|YP_006506903.1| 30s ribosome binding factor [Legionella pneumophila subsp.
pneumophila]
gi|61214776|sp|Q5X1C4.1|RBFA_LEGPA RecName: Full=Ribosome-binding factor A
gi|61214803|sp|Q5ZRV5.1|RBFA_LEGPH RecName: Full=Ribosome-binding factor A
gi|166218446|sp|A5IHU6.1|RBFA_LEGPC RecName: Full=Ribosome-binding factor A
gi|52630081|gb|AAU28822.1| ribosome binding factor A [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|53752540|emb|CAH13972.1| Ribosome-binding factor A [Legionella pneumophila str. Paris]
gi|148282858|gb|ABQ56946.1| ribosome binding factor A [Legionella pneumophila str. Corby]
gi|307611643|emb|CBX01329.1| ribosome-binding factor A [Legionella pneumophila 130b]
gi|364509473|gb|AEW52997.1| ribosome binding factor A [Legionella pneumophila subsp.
pneumophila ATCC 43290]
gi|395128776|emb|CCD06996.1| 30s ribosome binding factor [Legionella pneumophila subsp.
pneumophila]
Length = 123
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 67/135 (49%), Gaps = 15/135 (11%)
Query: 66 NPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
N +R +A+ IQR+L+ ++P+ D L TIS V+V+ADL
Sbjct: 4 NFKRTDRIAEMIQRKLA-----------LIIPQEI--KDPRLKGFVTISAVKVAADLGHA 50
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
K+Y +V +D K V L A Y+RS L R + LR P++ FI DES E G R+ +
Sbjct: 51 KIYFTVLNED--KSVVTNILNGAASYLRSALARSITLRTVPQLHFIYDESIEYGQRLSRL 108
Query: 186 LDRIKAEKEAAKSKN 200
+D + ++ N
Sbjct: 109 IDEVNPPDSSSDDNN 123
>gi|325578300|ref|ZP_08148435.1| ribosome-binding factor A [Haemophilus parainfluenzae ATCC 33392]
gi|419803029|ref|ZP_14328207.1| ribosome-binding factor A [Haemophilus parainfluenzae HK262]
gi|325160036|gb|EGC72165.1| ribosome-binding factor A [Haemophilus parainfluenzae ATCC 33392]
gi|385188825|gb|EIF36298.1| ribosome-binding factor A [Haemophilus parainfluenzae HK262]
Length = 128
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 55/90 (61%), Gaps = 6/90 (6%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIA----GLKSKAKYVRSQLGRRMKLRL 164
+ T+SDVEVS+DL KV+V+ D EVAIA GL+ A Y+RS +G+ M+LR+
Sbjct: 33 GMVTVSDVEVSSDLAYAKVFVTFLFDH--DEVAIAQGMKGLEKAAPYIRSLVGKAMRLRI 90
Query: 165 TPEIRFIEDESFERGSRVIAILDRIKAEKE 194
PEIRF D+S G R+ ++ + E E
Sbjct: 91 VPEIRFFYDQSLVEGMRMSNLVTNVVREDE 120
>gi|399004743|ref|ZP_10707352.1| ribosome-binding factor A [Pseudomonas sp. GM17]
gi|425897482|ref|ZP_18874073.1| ribosome-binding factor A [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
gi|397891330|gb|EJL07808.1| ribosome-binding factor A [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
gi|398128883|gb|EJM18263.1| ribosome-binding factor A [Pseudomonas sp. GM17]
Length = 131
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 70/126 (55%), Gaps = 16/126 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + +G L TI+ VEVS D+ K++
Sbjct: 7 RTQRIGDQMQRELAQLIRRE-------VKDPRVG-------LVTITAVEVSRDVGHAKIF 52
Query: 129 VSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G D ++A I L S A ++R QL R MKLR P++ F DES RG+ + A++
Sbjct: 53 ITVMGQDNADDIAQSIKVLNSAAGFLRMQLAREMKLRSVPQLHFHYDESVVRGAHLSALI 112
Query: 187 DRIKAE 192
+R AE
Sbjct: 113 ERAVAE 118
>gi|153954057|ref|YP_001394822.1| ribosome-binding factor A [Clostridium kluyveri DSM 555]
gi|219854670|ref|YP_002471792.1| hypothetical protein CKR_1327 [Clostridium kluyveri NBRC 12016]
gi|189039534|sp|A5N843.1|RBFA_CLOK5 RecName: Full=Ribosome-binding factor A
gi|254789743|sp|B9E1K3.1|RBFA_CLOK1 RecName: Full=Ribosome-binding factor A
gi|146346938|gb|EDK33474.1| Ribosome-binding factor A [Clostridium kluyveri DSM 555]
gi|219568394|dbj|BAH06378.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 121
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 72/127 (56%), Gaps = 14/127 (11%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
M N R + + ++++RE+S+++ D D LS++ +++ V+V+ D +
Sbjct: 1 MTNYRSGR-INEEMKREISNIIRNDM-------------KDPRLSAMVSVTKVDVTKDQK 46
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
KV+VS++G+D+ K+ LKS ++R ++G R+KLR TPEI D + E G +
Sbjct: 47 YAKVFVSIYGEDKSKDDTFQVLKSSESFIRREVGHRVKLRNTPEIIIEMDNTIEYGMHIN 106
Query: 184 AILDRIK 190
+L +IK
Sbjct: 107 ELLHKIK 113
>gi|226951830|ref|ZP_03822294.1| ribosome-binding factor A [Acinetobacter sp. ATCC 27244]
gi|294649084|ref|ZP_06726527.1| ribosome-binding factor A [Acinetobacter haemolyticus ATCC 19194]
gi|226837370|gb|EEH69753.1| ribosome-binding factor A [Acinetobacter sp. ATCC 27244]
gi|292825030|gb|EFF83790.1| ribosome-binding factor A [Acinetobacter haemolyticus ATCC 19194]
Length = 132
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 82/161 (50%), Gaps = 36/161 (22%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA +R+K +A +QRELS+++ + L + LG L TIS V+VSAD+
Sbjct: 1 MAGSQRLKRMADSVQRELSELIRQE-------LKDPRLGG------LVTISAVKVSADMG 47
Query: 124 VVKVYVSVFGDDRGKEVAIAG-------LKSKAKYVRSQLGRRMKLRLTPEIRFIEDESF 176
+VYV+V G + G + + A L + ++R +L RR+K R+TP +RF D++
Sbjct: 48 YAEVYVTVMGRELGDDQSEAANKETLDVLNKASGFLRHELSRRIKTRITPRLRFHYDKTN 107
Query: 177 ERGSRVIAILDRIKAEKEAAKSKNKEQFESPDLPEDERDWE 217
G+ + ++ EA K DLPE E+D E
Sbjct: 108 AYGNYMFGLI------AEAVK----------DLPEQEQDKE 132
>gi|157376520|ref|YP_001475120.1| ribosome-binding factor A [Shewanella sediminis HAW-EB3]
gi|189039562|sp|A8FYR9.1|RBFA_SHESH RecName: Full=Ribosome-binding factor A
gi|157318894|gb|ABV37992.1| ribosome-binding factor A [Shewanella sediminis HAW-EB3]
Length = 143
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 67/113 (59%), Gaps = 3/113 (2%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDD-RGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPE 167
T++DV+VS DL KVYV+ F +D + + + L + A Y+RS + RMKLR+ PE
Sbjct: 33 GFVTVNDVDVSRDLSYAKVYVTFFEEDEKLVQEKVEALDAAAGYIRSLVAGRMKLRVMPE 92
Query: 168 IRFIEDESFERGSRVIAILDRIKAEKEAAKSKNKEQFESPDLPEDERDWEGDD 220
+RFI D S G R+ ++ R+ ++ EA + ++ +Q + +D+ EG+D
Sbjct: 93 LRFIYDSSLVEGMRMSNLVSRVISDDEAKQKQHGDQQDVSQSSDDK--SEGED 143
>gi|427414396|ref|ZP_18904586.1| ribosome-binding factor A [Veillonella ratti ACS-216-V-Col6b]
gi|425714772|gb|EKU77775.1| ribosome-binding factor A [Veillonella ratti ACS-216-V-Col6b]
Length = 122
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 75/133 (56%), Gaps = 15/133 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
RV+ + + I++E+S ML+ L + +G T+++VEV+ DL+ +Y
Sbjct: 5 RVRKLQEFIKQEVSGMLMRG-------LKDPRIG-------FVTVTEVEVTGDLRQATIY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VS+FG D K+ ++ L+ A ++RS+LG+ + LR TPEI F D S + + ++L+
Sbjct: 51 VSLFGKDEEKKASLQALRHAAGHIRSELGKVLHLRYTPEIFFDADTSLDYSMHIESLLND 110
Query: 189 IKAEKEAAKSKNK 201
IK + EA +K
Sbjct: 111 IKKD-EAKHGDDK 122
>gi|389683489|ref|ZP_10174821.1| ribosome-binding factor A [Pseudomonas chlororaphis O6]
gi|388553002|gb|EIM16263.1| ribosome-binding factor A [Pseudomonas chlororaphis O6]
Length = 131
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 70/126 (55%), Gaps = 16/126 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + +G L TI+ VEVS D+ K++
Sbjct: 7 RTQRIGDQMQRELAQLIRRE-------VKDPRVG-------LVTITAVEVSRDVGHAKIF 52
Query: 129 VSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G D ++A I L S A ++R QL R MKLR P++ F DES RG+ + A++
Sbjct: 53 ITVMGQDNADDIAQSIKVLNSAAGFLRMQLAREMKLRSVPQLHFHYDESVVRGAHLSALI 112
Query: 187 DRIKAE 192
+R AE
Sbjct: 113 ERAVAE 118
>gi|404400418|ref|ZP_10992002.1| ribosome-binding factor A [Pseudomonas fuscovaginae UPB0736]
Length = 138
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 76/141 (53%), Gaps = 16/141 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + +G L TI+ V+VS D+ KV+
Sbjct: 7 RTQRIGDQMQRELAQLIRRE-------VKDPRVG-------LVTITAVDVSRDVGHAKVF 52
Query: 129 VSVFGDDRGKEV--AIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G D +++ +I L S A ++R QL R MKLR P++ F DES RG+ + A++
Sbjct: 53 ITVMGQDSQEDITQSIKVLNSAAGFLRMQLAREMKLRSVPQLHFHYDESVARGAHLSALI 112
Query: 187 DRIKAEKEAAKSKNKEQFESP 207
+R AE ++ Q SP
Sbjct: 113 ERAVAEDSQHGEDSEPQAASP 133
>gi|449138362|ref|ZP_21773629.1| ribosome-binding factor A [Rhodopirellula europaea 6C]
gi|448883047|gb|EMB13594.1| ribosome-binding factor A [Rhodopirellula europaea 6C]
Length = 137
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 60/95 (63%), Gaps = 1/95 (1%)
Query: 112 TISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFI 171
T+ VEVS D++ KV VSV GD+ K +++ GL++ A +++S++ RM R TP++RF
Sbjct: 34 TVIGVEVSPDMREAKVKVSVMGDESQKNLSLRGLQNSAGFLQSKIANRMDTRYTPKLRFE 93
Query: 172 EDESFERGSRVIAILDRIKAEKEAAKSKNKEQFES 206
D E V IL RI+ EKE A + +++Q +S
Sbjct: 94 VDRGQENAMTVSEILARIQQEKEGA-TDDRDQNDS 127
>gi|419844670|ref|ZP_14367957.1| ribosome-binding factor A [Haemophilus parainfluenzae HK2019]
gi|386416596|gb|EIJ31088.1| ribosome-binding factor A [Haemophilus parainfluenzae HK2019]
Length = 128
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 55/90 (61%), Gaps = 6/90 (6%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIA----GLKSKAKYVRSQLGRRMKLRL 164
+ T+SDVEVS+DL KV+V+ D EVAIA GL+ A Y+RS +G+ M+LR+
Sbjct: 33 GMVTVSDVEVSSDLAYAKVFVTFLFDH--DEVAIAQGMKGLEKAAPYIRSLVGKAMRLRI 90
Query: 165 TPEIRFIEDESFERGSRVIAILDRIKAEKE 194
PEIRF D+S G R+ ++ + E E
Sbjct: 91 VPEIRFFYDQSLVEGMRMSNLVTNVIREDE 120
>gi|32473743|ref|NP_866737.1| ribosome-binding factor A [Rhodopirellula baltica SH 1]
gi|417301241|ref|ZP_12088406.1| ribosome-binding factor A [Rhodopirellula baltica WH47]
gi|421610334|ref|ZP_16051510.1| ribosome-binding factor A [Rhodopirellula baltica SH28]
gi|440717970|ref|ZP_20898440.1| ribosome-binding factor A [Rhodopirellula baltica SWK14]
gi|39931771|sp|Q7URR1.1|RBFA_RHOBA RecName: Full=Ribosome-binding factor A
gi|32444279|emb|CAD74277.1| probable ribosome-binding factor A [Rhodopirellula baltica SH 1]
gi|327542472|gb|EGF28951.1| ribosome-binding factor A [Rhodopirellula baltica WH47]
gi|408498907|gb|EKK03390.1| ribosome-binding factor A [Rhodopirellula baltica SH28]
gi|436436852|gb|ELP30548.1| ribosome-binding factor A [Rhodopirellula baltica SWK14]
Length = 137
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 60/95 (63%), Gaps = 1/95 (1%)
Query: 112 TISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFI 171
T+ VEVS D++ KV VSV GD+ K +++ GL++ A +++S++ RM R TP++RF
Sbjct: 34 TVIGVEVSPDMREAKVKVSVMGDETQKNLSLRGLQNSAGFLQSKIANRMDTRYTPKLRFE 93
Query: 172 EDESFERGSRVIAILDRIKAEKEAAKSKNKEQFES 206
D E V IL RI+ EKE A + +++Q +S
Sbjct: 94 VDRGQENAMTVSEILARIQQEKEGA-TDDRDQNDS 127
>gi|149909279|ref|ZP_01897935.1| ribosome-binding factor A [Moritella sp. PE36]
gi|149807596|gb|EDM67544.1| ribosome-binding factor A [Moritella sp. PE36]
Length = 141
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 83/149 (55%), Gaps = 19/149 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + VA+Q+Q+E++ ++LQ V + +G + T+S +++S DL KVY
Sbjct: 7 RSRRVAQQLQQEVA------RILQREV-KDPRIG-------MVTVSSIDLSRDLSYAKVY 52
Query: 129 VSVFG----DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIA 184
V+ F +DR KE IA L + + Y+RS +G MKLR+ PE+RFI D + G R+ +
Sbjct: 53 VTFFNIDNDEDRVKE-GIAALTAASGYIRSLVGSAMKLRIVPELRFIYDNTLVEGMRLSS 111
Query: 185 ILDRIKAEKEAAKSKNKEQFESPDLPEDE 213
++ ++A+ + + + + + D E E
Sbjct: 112 LVTEVRAKDKKLQEEFGTKGDDKDTAEGE 140
>gi|256544699|ref|ZP_05472071.1| ribosome-binding factor A [Anaerococcus vaginalis ATCC 51170]
gi|256399588|gb|EEU13193.1| ribosome-binding factor A [Anaerococcus vaginalis ATCC 51170]
Length = 127
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 73/140 (52%), Gaps = 18/140 (12%)
Query: 66 NPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
+ RR ++ Q+Q+ELS +L D + + L + + +I++VEV+ DL
Sbjct: 2 DKRRTLKISSQMQKELSKILAED-------INDPRLSD----NVIVSITEVEVTNDLSYA 50
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
++VSV GD+ KE I L Y++ +G RM+LR PE RF D S E G
Sbjct: 51 DIFVSVLGDENKKESVIEALDQAKGYMKKLIGERMRLRSMPEFRFKYDNSIEHG----VY 106
Query: 186 LDRIKAE---KEAAKSKNKE 202
+D++ AE ++ +KN+E
Sbjct: 107 MDKLIAETIKRDEKNAKNRE 126
>gi|308068701|ref|YP_003870306.1| ribosome-binding factor A [Paenibacillus polymyxa E681]
gi|390454025|ref|ZP_10239553.1| ribosome-binding factor A [Paenibacillus peoriae KCTC 3763]
gi|305857980|gb|ADM69768.1| Ribosome-binding factor A [Paenibacillus polymyxa E681]
Length = 116
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 67/121 (55%), Gaps = 14/121 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R V +QI++ELS ++ T+ L + +G T++ V+++ DL K+Y
Sbjct: 5 RTGRVGEQIKKELSQLIQTE-------LKDPRIG-------FITVTGVDLTNDLSQAKIY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+SV GD+ K ++ L Y+RS+LG+R++LR PE+ F DES GSR+ +L
Sbjct: 51 LSVLGDEEQKNSSLKALDKANGYLRSELGKRIRLRHIPELIFKIDESIAYGSRIEKLLSD 110
Query: 189 I 189
I
Sbjct: 111 I 111
>gi|304437174|ref|ZP_07397135.1| ribosome-binding factor A [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|304369836|gb|EFM23500.1| ribosome-binding factor A [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 136
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 70/132 (53%), Gaps = 14/132 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
RV+ V + +++E+SD++ F L + +G T++ V + DL+ K+Y
Sbjct: 18 RVEKVQELMKQEVSDII-------FNELKDPRIG-------FVTVTSVACTEDLREAKIY 63
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VSV GD++ + GL S +VR ++G+R++LR TPEI F D S + +L+
Sbjct: 64 VSVMGDEKKARDTLNGLNSSLGFVRREIGKRIRLRFTPEISFSLDTSLNYSDHIQRLLNE 123
Query: 189 IKAEKEAAKSKN 200
I E+ K ++
Sbjct: 124 IHEEQPNGKKED 135
>gi|416892955|ref|ZP_11924279.1| ribosome-binding factor A [Aggregatibacter aphrophilus ATCC 33389]
gi|347814653|gb|EGY31302.1| ribosome-binding factor A [Aggregatibacter aphrophilus ATCC 33389]
Length = 128
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 77/136 (56%), Gaps = 16/136 (11%)
Query: 68 RRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKV 127
+R VA++IQ+E++ +L + + + +G + T+SDVE+S+DL KV
Sbjct: 6 KRSDRVAQEIQKEIAVILQRE-------VKDPRIG-------MATVSDVEMSSDLAYAKV 51
Query: 128 YVSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
+V+ D + +A + GL+ A Y+R+ LG+ M+LR+ PEIRFI D+S G R+ +
Sbjct: 52 FVTFLFDHDEQAIAQGMKGLEKAAPYIRTLLGKAMRLRIVPEIRFIYDQSLVEGMRMSNL 111
Query: 186 LDRIKAEKEAAKSKNK 201
+ + E E ++K
Sbjct: 112 VTNVVREDEKKHVEDK 127
>gi|66047406|ref|YP_237247.1| ribosome-binding factor A [Pseudomonas syringae pv. syringae B728a]
gi|75500704|sp|Q4ZNR3.1|RBFA_PSEU2 RecName: Full=Ribosome-binding factor A
gi|63258113|gb|AAY39209.1| ribosome-binding factor A [Pseudomonas syringae pv. syringae B728a]
Length = 138
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 71/126 (56%), Gaps = 16/126 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + +G L TI+ V+VS D+ K++
Sbjct: 7 RTQRIGDQMQRELAQLIRRE-------IKDPRVG-------LVTITAVDVSRDVGHAKIF 52
Query: 129 VSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G D +E+A I L S A ++R QL R MKLR P++ F DES RG+ + A++
Sbjct: 53 MTVMGQDSAEEIAQTIKVLNSAAGFLRMQLAREMKLRSVPQLHFHYDESVVRGAHLSALI 112
Query: 187 DRIKAE 192
+R AE
Sbjct: 113 ERAVAE 118
>gi|335429684|ref|ZP_08556582.1| ribosome-binding factor A [Haloplasma contractile SSD-17B]
gi|334889694|gb|EGM27979.1| ribosome-binding factor A [Haloplasma contractile SSD-17B]
Length = 113
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 70/121 (57%), Gaps = 14/121 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
RV+ VAKQI+RE+S K+LQ V D+ L+ T++ V++S D K++
Sbjct: 5 RVQKVAKQIEREVS------KILQMEV-------KDKRLN-FITVTGVDLSNDYSFAKIH 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+V G++ KE GL+ ++RS L R+++R PE+ F DES E G+++ +L++
Sbjct: 51 YTVLGNEDKKEAVANGLEKAKGFIRSALSSRVQIRKLPELIFTYDESIEYGNKIQKMLNQ 110
Query: 189 I 189
+
Sbjct: 111 L 111
>gi|398983416|ref|ZP_10690025.1| ribosome-binding factor A [Pseudomonas sp. GM24]
gi|399014429|ref|ZP_10716720.1| ribosome-binding factor A [Pseudomonas sp. GM16]
gi|398110994|gb|EJM00886.1| ribosome-binding factor A [Pseudomonas sp. GM16]
gi|398157317|gb|EJM45713.1| ribosome-binding factor A [Pseudomonas sp. GM24]
Length = 133
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 71/126 (56%), Gaps = 16/126 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + +G L TI+ VEVS D+ K++
Sbjct: 7 RTQRIGDQMQRELAQLIRRE-------VKDPRVG-------LVTITAVEVSRDVGHAKIF 52
Query: 129 VSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G D +++A I L + A ++R QL R MKLR P++ F DES RG+ + A++
Sbjct: 53 ITVMGQDNAEDIAQSIKVLNAAAGFLRMQLAREMKLRSVPQLHFHYDESVVRGAHLSALI 112
Query: 187 DRIKAE 192
+R AE
Sbjct: 113 ERAVAE 118
>gi|336436965|ref|ZP_08616674.1| ribosome-binding factor A [Lachnospiraceae bacterium 1_4_56FAA]
gi|336006099|gb|EGN36135.1| ribosome-binding factor A [Lachnospiraceae bacterium 1_4_56FAA]
Length = 124
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 62/107 (57%), Gaps = 13/107 (12%)
Query: 73 VAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVF 132
V ++QREL + +L+ + D ++ +T++ VEV+ DL+ K ++SV
Sbjct: 11 VNAEVQRELGN------ILRGGI-------KDPRVAPMTSVVAVEVAPDLKTCKAFISVL 57
Query: 133 GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERG 179
GD++ ++ + GL+S Y+R +L R + +R TPEI FI D+S E G
Sbjct: 58 GDEKAQQDTLKGLQSAEGYIRRELARTINMRNTPEIVFILDQSIEYG 104
>gi|333398736|ref|ZP_08480549.1| ribosome-binding factor A [Leuconostoc gelidum KCTC 3527]
gi|406599760|ref|YP_006745106.1| ribosome-binding factor A [Leuconostoc gelidum JB7]
gi|406371295|gb|AFS40220.1| ribosome-binding factor A [Leuconostoc gelidum JB7]
Length = 117
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 76/134 (56%), Gaps = 23/134 (17%)
Query: 64 MANPRRVKMVAKQIQRELSDMLL---TDKVLQFAVLPEAALGADRYLSSLTTISDVEVSA 120
MANP+R +A+++QR+++ +LL D +Q T++ VE+S
Sbjct: 1 MANPQRAGRLAQEVQRDVTALLLKRINDPRVQD-----------------VTVTSVELSG 43
Query: 121 DLQVVKVYVSVFGD--DRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFER 178
DLQ+ +Y S+ D GK+ A AGL++ + +R +LG R+ + TPE++F+ D+S +
Sbjct: 44 DLQIATIYYSILSDLASDGKK-AQAGLEAASGLIRKELGSRLTVYKTPELKFVRDQSVQY 102
Query: 179 GSRVIAILDRIKAE 192
G+ + ++ ++ +E
Sbjct: 103 GNHIEDLIRKLHSE 116
>gi|77457007|ref|YP_346512.1| ribosome-binding factor A [Pseudomonas fluorescens Pf0-1]
gi|398976129|ref|ZP_10686091.1| ribosome-binding factor A [Pseudomonas sp. GM25]
gi|123606004|sp|Q3KI83.1|RBFA_PSEPF RecName: Full=Ribosome-binding factor A
gi|77381010|gb|ABA72523.1| ribosome-binding factor A [Pseudomonas fluorescens Pf0-1]
gi|398139681|gb|EJM28676.1| ribosome-binding factor A [Pseudomonas sp. GM25]
Length = 133
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 71/126 (56%), Gaps = 16/126 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + +G L TI+ VEVS D+ K++
Sbjct: 7 RTQRIGDQMQRELAQLIRRE-------VKDPRVG-------LVTITAVEVSRDVGHAKIF 52
Query: 129 VSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G D +++A I L + A ++R QL R MKLR P++ F DES RG+ + A++
Sbjct: 53 ITVMGQDNAEDIAQSIKVLNAAAGFLRMQLAREMKLRSVPQLHFHYDESVVRGAHLSALI 112
Query: 187 DRIKAE 192
+R AE
Sbjct: 113 ERAVAE 118
>gi|407794967|ref|ZP_11141985.1| ribosome-binding factor A [Idiomarina xiamenensis 10-D-4]
gi|407210044|gb|EKE79926.1| ribosome-binding factor A [Idiomarina xiamenensis 10-D-4]
Length = 136
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 57/86 (66%), Gaps = 5/86 (5%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLK---SKAKYVRSQLGRRMKLRLT 165
S+ T+SDVEVS DL KV+V+ DD G++V AGLK A ++RS LG+R++ R+
Sbjct: 33 SMVTVSDVEVSRDLAYAKVFVTFLQDD-GEQVK-AGLKVLNEAAGFIRSLLGKRLRARVV 90
Query: 166 PEIRFIEDESFERGSRVIAILDRIKA 191
P++RF+ D S G R+ ++D+ +A
Sbjct: 91 PQLRFVHDPSLNEGIRMARLVDQARA 116
>gi|398961654|ref|ZP_10678868.1| ribosome-binding factor A [Pseudomonas sp. GM30]
gi|398152237|gb|EJM40762.1| ribosome-binding factor A [Pseudomonas sp. GM30]
Length = 132
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 71/126 (56%), Gaps = 16/126 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + +G L TI+ VEVS D+ K++
Sbjct: 7 RTQRIGDQMQRELAQLIRRE-------VKDPRVG-------LVTITAVEVSRDVGHAKIF 52
Query: 129 VSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G D +++A I L + A ++R QL R MKLR P++ F DES RG+ + A++
Sbjct: 53 ITVMGQDNAEDIAQSIKVLNAAAGFLRMQLAREMKLRSVPQLHFHYDESVVRGAHLSALI 112
Query: 187 DRIKAE 192
+R AE
Sbjct: 113 ERAVAE 118
>gi|424921356|ref|ZP_18344717.1| ribosome-binding factor A [Pseudomonas fluorescens R124]
gi|404302516|gb|EJZ56478.1| ribosome-binding factor A [Pseudomonas fluorescens R124]
Length = 132
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 71/126 (56%), Gaps = 16/126 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + +G L TI+ VEVS D+ K++
Sbjct: 7 RTQRIGDQMQRELAQLIRRE-------VKDPRVG-------LVTITAVEVSRDVGHAKIF 52
Query: 129 VSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G D +++A I L + A ++R QL R MKLR P++ F DES RG+ + A++
Sbjct: 53 ITVMGQDNAEDIAQSIKVLNAAAGFLRMQLAREMKLRSVPQLHFHYDESVVRGAHLSALI 112
Query: 187 DRIKAE 192
+R AE
Sbjct: 113 ERAVAE 118
>gi|16800432|ref|NP_470700.1| ribosome-binding factor A [Listeria innocua Clip11262]
gi|20978611|sp|Q92C27.1|RBFA_LISIN RecName: Full=Ribosome-binding factor A
gi|16413837|emb|CAC96595.1| rbfA [Listeria innocua Clip11262]
Length = 114
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 66/121 (54%), Gaps = 20/121 (16%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R V++Q+++EL D+L + D L F T++ V+V+ DLQ
Sbjct: 4 RANRVSEQMKKELGDILNRKIKDPRLGFV-----------------TVTGVDVTGDLQEA 46
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
KV++S+ G D+ KE + L+ ++RS++GRR++LR PE+ F D S G+R+ +
Sbjct: 47 KVFISILGTDKEKENTLLALEKAHGFIRSEIGRRIRLRKVPEMSFEIDNSIAYGNRIDEL 106
Query: 186 L 186
L
Sbjct: 107 L 107
>gi|309775441|ref|ZP_07670444.1| ribosome-binding factor A [Erysipelotrichaceae bacterium 3_1_53]
gi|308916830|gb|EFP62567.1| ribosome-binding factor A [Erysipelotrichaceae bacterium 3_1_53]
Length = 112
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 66/117 (56%), Gaps = 14/117 (11%)
Query: 73 VAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVF 132
+A IQ+E+S+ ++QF+ L + +G TI+DV V+ DL + K+YVS
Sbjct: 8 IAGIIQKEISE------IIQFS-LKDPKIG-------FITITDVTVTNDLSIAKIYVSFL 53
Query: 133 GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRI 189
G +E + L+ Y+RS+L +RM +R PE+ F D+S ERG+++ I+ I
Sbjct: 54 GQKPREEAGMKALERSKGYLRSELAKRMTIRKVPELIFKLDDSLERGNKIERIISEI 110
>gi|339483480|ref|YP_004695266.1| Ribosome-binding factor A [Nitrosomonas sp. Is79A3]
gi|338805625|gb|AEJ01867.1| Ribosome-binding factor A [Nitrosomonas sp. Is79A3]
Length = 130
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 14/128 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R +A QIQREL+D+L + + + +G T++ VEV+ D KV+
Sbjct: 7 RTLRIADQIQRELADLLQHE-------IKDPRVGQ-------ITLTGVEVTRDYSHAKVF 52
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+ G + GL+ ++RS L RMKLR+ P++ FI DES ERG R+ ++D
Sbjct: 53 YTTLGSKEENFLVEKGLEHAKGFLRSNLSHRMKLRIVPQLHFIYDESVERGVRLSKLIDE 112
Query: 189 IKAEKEAA 196
A+++ +
Sbjct: 113 AIAQEQTS 120
>gi|15602622|ref|NP_245694.1| ribosome-binding factor A [Pasteurella multocida subsp. multocida
str. Pm70]
gi|383310431|ref|YP_005363241.1| ribosome-binding factor A [Pasteurella multocida subsp. multocida
str. HN06]
gi|417850682|ref|ZP_12496535.1| ribosome-binding factor A [Pasteurella multocida subsp. gallicida
str. Anand1_poultry]
gi|417855860|ref|ZP_12500921.1| ribosome-binding factor A [Pasteurella multocida subsp. multocida
str. Anand1_goat]
gi|421252514|ref|ZP_15708126.1| ribosome-binding factor A [Pasteurella multocida subsp. multocida
str. Anand1_buffalo]
gi|421263500|ref|ZP_15714544.1| ribosome-binding factor A [Pasteurella multocida subsp. multocida
str. P52VAC]
gi|13431798|sp|P57872.1|RBFA_PASMU RecName: Full=Ribosome-binding factor A
gi|12721055|gb|AAK02841.1| RbfA [Pasteurella multocida subsp. multocida str. Pm70]
gi|338215290|gb|EGP01587.1| ribosome-binding factor A [Pasteurella multocida subsp. multocida
str. Anand1_goat]
gi|338220458|gb|EGP05966.1| ribosome-binding factor A [Pasteurella multocida subsp. gallicida
str. Anand1_poultry]
gi|380871703|gb|AFF24070.1| ribosome-binding factor A [Pasteurella multocida subsp. multocida
str. HN06]
gi|401689530|gb|EJS84952.1| ribosome-binding factor A [Pasteurella multocida subsp. multocida
str. P52VAC]
gi|401695958|gb|EJS88955.1| ribosome-binding factor A [Pasteurella multocida subsp. multocida
str. Anand1_buffalo]
Length = 132
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 72/130 (55%), Gaps = 16/130 (12%)
Query: 68 RRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKV 127
+R VA++IQ+E++ +L + + + +G + T+SDVEVS+DL KV
Sbjct: 6 KRSDRVAQEIQKEIAVILQRE-------VKDPRIG-------MVTVSDVEVSSDLAYAKV 51
Query: 128 YVSVF--GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
+V+ D+ + + GL+ + Y+RS LG+ M+LR+ PEIRFI D S G R+ +
Sbjct: 52 FVTFLFDNDESAIDAGMKGLEKASPYIRSLLGKAMRLRIVPEIRFIYDRSLIEGMRMSNL 111
Query: 186 LDRIKAEKEA 195
+ + E A
Sbjct: 112 VSNVIREDNA 121
>gi|296111955|ref|YP_003622337.1| ribosome-binding factor A [Leuconostoc kimchii IMSNU 11154]
gi|339490770|ref|YP_004705275.1| ribosome-binding factor A [Leuconostoc sp. C2]
gi|295833487|gb|ADG41368.1| ribosome-binding factor A [Leuconostoc kimchii IMSNU 11154]
gi|338852442|gb|AEJ30652.1| ribosome-binding factor A [Leuconostoc sp. C2]
Length = 117
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 69/124 (55%), Gaps = 23/124 (18%)
Query: 64 MANPRRVKMVAKQIQRELSDMLL---TDKVLQFAVLPEAALGADRYLSSLTTISDVEVSA 120
MANP+R +A+++QR+++D+LL D +Q TI+ VE+S
Sbjct: 1 MANPQRAGRLAQEVQRDVTDLLLKRINDPRVQD-----------------ITITSVELSG 43
Query: 121 DLQVVKVYVSVFGD--DRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFER 178
DLQ+ +Y S D G++ A AGL + + +R +LG R+ + TPE++F+ D+S +
Sbjct: 44 DLQIATIYYSTLSDLASVGQK-AQAGLDAASGLIRKELGSRLTVYKTPELKFVRDQSIQY 102
Query: 179 GSRV 182
G+ +
Sbjct: 103 GNHI 106
>gi|389578895|ref|ZP_10168922.1| ribosome-binding factor A [Desulfobacter postgatei 2ac9]
gi|389400530|gb|EIM62752.1| ribosome-binding factor A [Desulfobacter postgatei 2ac9]
Length = 136
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 52/78 (66%)
Query: 110 LTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIR 169
+ TIS V++S DL + VYV+VFGD + A+ G + +++ ++ ++ LRL P++R
Sbjct: 33 MATISGVKMSPDLSLAYVYVTVFGDKKRIREALKGFQKSKGFIKKRIAPKLGLRLMPDLR 92
Query: 170 FIEDESFERGSRVIAILD 187
FI D+SF+ +R+ A++D
Sbjct: 93 FIHDDSFDNAARLDALID 110
>gi|78043533|ref|YP_360585.1| ribosome-binding factor A [Carboxydothermus hydrogenoformans
Z-2901]
gi|123575934|sp|Q3AB99.1|RBFA_CARHZ RecName: Full=Ribosome-binding factor A
gi|77995648|gb|ABB14547.1| ribosome-binding factor A [Carboxydothermus hydrogenoformans
Z-2901]
Length = 125
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 61/93 (65%), Gaps = 2/93 (2%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEI 168
+++ V+++ DL K+Y+SV+G + K+ + L S +++ +L R++LR+ PE+
Sbjct: 34 GFVSVTKVDLARDLSQAKIYISVYGSEEDKKNSFIALNSAKGFIKGELASRVRLRIMPEL 93
Query: 169 RFIEDESFERGSRVIAILDRIKAEKEAAKSKNK 201
F+ED S E G+R++ IL+ +K KEA +++++
Sbjct: 94 YFVEDPSIEYGARIMEILEGLK--KEAGENESE 124
>gi|429735738|ref|ZP_19269669.1| ribosome-binding factor A [Selenomonas sp. oral taxon 138 str.
F0429]
gi|429157086|gb|EKX99693.1| ribosome-binding factor A [Selenomonas sp. oral taxon 138 str.
F0429]
Length = 147
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 70/129 (54%), Gaps = 14/129 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
RV+ + + I++E+SD++ F L + +G T++ V + DL+ K+Y
Sbjct: 28 RVEKLQELIKQEISDII-------FNELKDPRIG-------FVTVTSVACTEDLREAKIY 73
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VSV GD++ + GL+S +VR ++G+R++LR TPEI F D S + +L+
Sbjct: 74 VSVMGDEKKARDTLYGLESSLGFVRREIGKRIRLRFTPEISFALDTSLNYSDHIQRLLNE 133
Query: 189 IKAEKEAAK 197
I +K A +
Sbjct: 134 IHEDKPAGE 142
>gi|418465686|ref|ZP_13036619.1| ribosome-binding factor A [Aggregatibacter actinomycetemcomitans
RhAA1]
gi|359755721|gb|EHK89884.1| ribosome-binding factor A [Aggregatibacter actinomycetemcomitans
RhAA1]
Length = 128
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 77/137 (56%), Gaps = 16/137 (11%)
Query: 68 RRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKV 127
+R VA++IQ+E++ +L + + + +G + T+SDV+VS+DL KV
Sbjct: 6 KRSDRVAQEIQKEIAVILQRE-------VKDPRIG-------MVTVSDVDVSSDLAYAKV 51
Query: 128 YVSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
+V+ D + +A + GL+ A Y+R+ LG+ M+LR+ PEIRFI D+S G R+ +
Sbjct: 52 FVTFLFDHDEQAIAQGMKGLEKAAPYIRTLLGKSMRLRIVPEIRFIYDQSLVEGMRMSNL 111
Query: 186 LDRIKAEKEAAKSKNKE 202
+ + E + ++ E
Sbjct: 112 VTNVVREDQKKHHEDNE 128
>gi|422671914|ref|ZP_16731279.1| ribosome-binding factor A [Pseudomonas syringae pv. aceris str.
M302273]
gi|330969653|gb|EGH69719.1| ribosome-binding factor A [Pseudomonas syringae pv. aceris str.
M302273]
Length = 138
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 71/126 (56%), Gaps = 16/126 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + +G L TI+ V+VS D+ K++
Sbjct: 7 RTQRIGDQMQRELAQLIRRE-------IKDPRVG-------LVTITAVDVSRDVGHAKIF 52
Query: 129 VSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G D +E+A I L S A ++R QL R MKLR P++ F DES RG+ + A++
Sbjct: 53 MTVMGQDSSEEIAQTIKVLNSAAGFLRMQLAREMKLRSVPQLHFHYDESVVRGAHLSALI 112
Query: 187 DRIKAE 192
+R AE
Sbjct: 113 ERAVAE 118
>gi|167766531|ref|ZP_02438584.1| hypothetical protein CLOSS21_01037 [Clostridium sp. SS2/1]
gi|317498931|ref|ZP_07957214.1| ribosome-binding factor A [Lachnospiraceae bacterium 5_1_63FAA]
gi|429762665|ref|ZP_19295051.1| ribosome-binding factor A [Anaerostipes hadrus DSM 3319]
gi|167711654|gb|EDS22233.1| ribosome-binding factor A [Clostridium sp. SS2/1]
gi|291558570|emb|CBL37370.1| ribosome-binding factor A [butyrate-producing bacterium SSC/2]
gi|316893764|gb|EFV15963.1| ribosome-binding factor A [Lachnospiraceae bacterium 5_1_63FAA]
gi|429181299|gb|EKY22471.1| ribosome-binding factor A [Anaerostipes hadrus DSM 3319]
Length = 123
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 47/76 (61%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLR 163
D ++ +T++ D V++DL+ K Y+SV G+D KE + GL S Y+R +L + LR
Sbjct: 29 DPRIAPMTSVVDAVVTSDLKQCKAYISVLGNDEEKEETMKGLNSAVGYIRRELAHSINLR 88
Query: 164 LTPEIRFIEDESFERG 179
TPEI FI D+S E G
Sbjct: 89 NTPEITFILDDSIEYG 104
>gi|398864719|ref|ZP_10620250.1| ribosome-binding factor A [Pseudomonas sp. GM78]
gi|398244670|gb|EJN30213.1| ribosome-binding factor A [Pseudomonas sp. GM78]
Length = 133
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 71/126 (56%), Gaps = 16/126 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + +G L TI+ VEVS D+ K++
Sbjct: 7 RTQRIGDQMQRELAQLIRRE-------VKDPRVG-------LVTITAVEVSRDVGHAKIF 52
Query: 129 VSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G D +++A I L S A ++R QL R MKLR P++ F DES RG+ + A++
Sbjct: 53 ITVMGQDSHEDIAQSIKVLNSAAGFLRMQLAREMKLRSVPQLHFHYDESVVRGAHLSALI 112
Query: 187 DRIKAE 192
+R AE
Sbjct: 113 ERAVAE 118
>gi|310641597|ref|YP_003946355.1| ribosome-binding factor a [Paenibacillus polymyxa SC2]
gi|386040623|ref|YP_005959577.1| ribosome-binding factor A [Paenibacillus polymyxa M1]
gi|309246547|gb|ADO56114.1| Ribosome-binding factor A [Paenibacillus polymyxa SC2]
gi|343096661|emb|CCC84870.1| ribosome-binding factor A [Paenibacillus polymyxa M1]
Length = 116
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 14/121 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R V +QI++ELS ++ T+ L + +G T++ V+V+ DL KVY
Sbjct: 5 RTGRVGEQIKKELSLLIQTE-------LKDPRIG-------FITVTGVDVTNDLSQAKVY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+SV GD+ K ++ L Y+RS+LG+R++LR PE+ F DES GSR+ +L
Sbjct: 51 LSVLGDEEQKTSSLKALDKANGYLRSELGKRIRLRHIPELIFKIDESIAYGSRIEKLLSD 110
Query: 189 I 189
I
Sbjct: 111 I 111
>gi|28871623|ref|NP_794242.1| ribosome-binding factor A [Pseudomonas syringae pv. tomato str.
DC3000]
gi|213966646|ref|ZP_03394797.1| ribosome-binding factor A [Pseudomonas syringae pv. tomato T1]
gi|301383156|ref|ZP_07231574.1| ribosome-binding factor A [Pseudomonas syringae pv. tomato Max13]
gi|302063409|ref|ZP_07254950.1| ribosome-binding factor A [Pseudomonas syringae pv. tomato K40]
gi|302133782|ref|ZP_07259772.1| ribosome-binding factor A [Pseudomonas syringae pv. tomato NCPPB
1108]
gi|422300030|ref|ZP_16387573.1| ribosome-binding factor A [Pseudomonas avellanae BPIC 631]
gi|422650893|ref|ZP_16713693.1| ribosome-binding factor A [Pseudomonas syringae pv. actinidiae str.
M302091]
gi|422658029|ref|ZP_16720466.1| ribosome-binding factor A [Pseudomonas syringae pv. lachrymans str.
M302278]
gi|32171593|sp|Q87WQ6.1|RBFA_PSESM RecName: Full=Ribosome-binding factor A
gi|28854875|gb|AAO57937.1| ribosome-binding factor A [Pseudomonas syringae pv. tomato str.
DC3000]
gi|213928496|gb|EEB62040.1| ribosome-binding factor A [Pseudomonas syringae pv. tomato T1]
gi|330963976|gb|EGH64236.1| ribosome-binding factor A [Pseudomonas syringae pv. actinidiae str.
M302091]
gi|331016649|gb|EGH96705.1| ribosome-binding factor A [Pseudomonas syringae pv. lachrymans str.
M302278]
gi|407987896|gb|EKG30571.1| ribosome-binding factor A [Pseudomonas avellanae BPIC 631]
Length = 138
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 79/142 (55%), Gaps = 20/142 (14%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + +G L TI+ V+VS D+ K++
Sbjct: 7 RTQRIGDQMQRELAQLIRRE-------IKDPRVG-------LVTITAVDVSRDVGHAKIF 52
Query: 129 VSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G D +++A I L + A ++R QL R MKLR P++ F DES RG+ + A++
Sbjct: 53 MTVMGQDNAEDIAQTIKVLNAAAGFLRMQLAREMKLRSVPQLHFHYDESVVRGAHLSALI 112
Query: 187 DRIKAEKEAAKSKNKEQFESPD 208
+R A+ S+++E SPD
Sbjct: 113 ERAVAQ----DSQHQEGPASPD 130
>gi|153855234|ref|ZP_01996400.1| hypothetical protein DORLON_02414 [Dorea longicatena DSM 13814]
gi|149752233|gb|EDM62164.1| ribosome-binding factor A [Dorea longicatena DSM 13814]
Length = 128
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%)
Query: 111 TTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRF 170
T++ EV+ DL+ K Y+SV GD +E I GL+S Y+R +L R + LR TPEI+F
Sbjct: 36 TSVVAAEVAPDLKTCKAYISVLGDAYEQEQTIKGLQSAEGYIRRELARTLNLRNTPEIKF 95
Query: 171 IEDESFERGSRVIAILDRI 189
+ D+S E G + +D +
Sbjct: 96 VLDQSIEYGVNMSKKIDEV 114
>gi|188586071|ref|YP_001917616.1| ribosome-binding factor A [Natranaerobius thermophilus JW/NM-WN-LF]
gi|229568641|sp|B2A398.1|RBFA_NATTJ RecName: Full=Ribosome-binding factor A
gi|179350758|gb|ACB85028.1| ribosome-binding factor A [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 131
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 15/116 (12%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEI 168
T++ V++S DL+ KV+VS+ G+ ++ ++ GL+ ++RS+LG+R++LR PEI
Sbjct: 31 GFVTVTSVDLSGDLRHAKVFVSILGEKENQQDSLRGLEKATGFIRSELGKRVRLRHVPEI 90
Query: 169 RFIEDESFERGSRVIAILDRIKAEKEAAKSKNKEQFESPDLPEDERDWEGDDPDED 224
F DES E G + +L +Q + ED D E +DP E+
Sbjct: 91 VFKFDESIEHGDHINKLL---------------KQMNLGEDNEDNEDKENNDPGEE 131
>gi|334340465|ref|YP_004545445.1| ribosome-binding factor A [Desulfotomaculum ruminis DSM 2154]
gi|334091819|gb|AEG60159.1| ribosome-binding factor A [Desulfotomaculum ruminis DSM 2154]
Length = 120
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 77/131 (58%), Gaps = 14/131 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + +A+ I++E++D++ + + + +G TI+ VEV+ DL K++
Sbjct: 4 RPERIAEAIKKEVADLICQE-------VKDPRVG-------FVTITGVEVTRDLSYAKIF 49
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VSV G + ++ + L+ A ++RS++GRR+K+R PE+ F D S + G+R++ +L
Sbjct: 50 VSVMGSEEQRQETLQALQKVAGFLRSEVGRRIKVRHAPELIFKLDTSLDHGTRIMKLLHE 109
Query: 189 IKAEKEAAKSK 199
+ ++E++ ++
Sbjct: 110 VNKQEESSTNE 120
>gi|418592923|ref|ZP_13156783.1| ribosome-binding factor A [Pseudomonas aeruginosa MPAO1/P2]
gi|375048272|gb|EHS40799.1| ribosome-binding factor A [Pseudomonas aeruginosa MPAO1/P2]
Length = 129
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 69/126 (54%), Gaps = 16/126 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + LG L TI+ VEVS D+ KV+
Sbjct: 7 RTQRIGDQMQRELAQLIQRE-------IKDPRLG-------LVTITGVEVSRDVAHAKVF 52
Query: 129 VSVFGDDRGKEVAIAG--LKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G D ++A+ L A Y+R LG+ MKLR P++ F DES RG+ + A++
Sbjct: 53 ITVMGQDDAGKIALNMEILNDAAGYLRMLLGKSMKLRSVPQLHFHYDESIRRGAELSALI 112
Query: 187 DRIKAE 192
+R AE
Sbjct: 113 ERAXAE 118
>gi|223042080|ref|ZP_03612256.1| ribosome-binding factor A [Actinobacillus minor 202]
gi|223017155|gb|EEF15591.1| ribosome-binding factor A [Actinobacillus minor 202]
Length = 126
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 60/97 (61%), Gaps = 5/97 (5%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEV--AIAGLKSKAKYVRSQLGRRMKLRLTP 166
+ T+SDVEVS DL K++V+ D+ + + + GL+ + Y+RS +G+ M+LR+ P
Sbjct: 33 GMVTVSDVEVSRDLAYAKIFVTFLFDNDQEAIKQGMKGLEKASPYIRSLVGKAMRLRIVP 92
Query: 167 EIRFIEDESFERGSRVIAILDRIKAEKEAAKSKNKEQ 203
E+RFI DES G R+ ++ + E EA K+KE+
Sbjct: 93 ELRFIYDESLVEGMRMSNLVSNVIREDEA---KHKEE 126
>gi|154497686|ref|ZP_02036064.1| hypothetical protein BACCAP_01662 [Bacteroides capillosus ATCC
29799]
gi|150273184|gb|EDN00329.1| ribosome-binding factor A [Pseudoflavonifractor capillosus ATCC
29799]
Length = 129
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 67/118 (56%), Gaps = 15/118 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R+ + ++IQRELS ++ T K D + L +I+ V+ + DL+ K++
Sbjct: 5 RIGRINEEIQRELSGLIRTVK--------------DPRVHGLVSITAVDTTTDLRYAKIH 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
VSV EV + GLKS A Y+R +LG + LR TPE+ F +D+S +G+ ++++L
Sbjct: 51 VSVLDKSDVNEV-VKGLKSAAGYLRRELGAALSLRYTPELIFEKDDSMAQGAHILSML 107
>gi|397668443|ref|YP_006509980.1| 30s ribosome binding factor [Legionella pneumophila subsp.
pneumophila]
gi|395131854|emb|CCD10147.1| 30s ribosome binding factor [Legionella pneumophila subsp.
pneumophila]
Length = 123
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 64/124 (51%), Gaps = 15/124 (12%)
Query: 66 NPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
N +R +A+ IQR+L+ ++P+ D L TIS V+V+ADL
Sbjct: 4 NFKRTDRIAEMIQRKLA-----------LIIPQEI--KDPRLKGFVTISAVKVAADLGHA 50
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
K+Y +V +D K V L A Y+RS L R + LR P++ FI DES E G R+ +
Sbjct: 51 KIYFTVLNED--KSVVTNILNGAASYLRSALARSITLRTVPQLHFIYDESIEYGQRLSRL 108
Query: 186 LDRI 189
+D +
Sbjct: 109 IDEV 112
>gi|238924303|ref|YP_002937819.1| ribosome-binding factor A [Eubacterium rectale ATCC 33656]
gi|259551987|sp|C4ZBF3.1|RBFA_EUBR3 RecName: Full=Ribosome-binding factor A
gi|238875978|gb|ACR75685.1| ribosome-binding factor A [Eubacterium rectale ATCC 33656]
gi|291525074|emb|CBK90661.1| ribosome-binding factor A [Eubacterium rectale DSM 17629]
gi|291529169|emb|CBK94755.1| ribosome-binding factor A [Eubacterium rectale M104/1]
Length = 121
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 47/76 (61%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLR 163
D ++ +T++ VEV+ DL+ K Y+SV GD + + +AGLKS Y+R L + + LR
Sbjct: 29 DPRINPMTSVVAVEVAPDLKTAKAYISVLGDKKSQADTLAGLKSAEGYIRRTLAKNINLR 88
Query: 164 LTPEIRFIEDESFERG 179
TP I FI D+S E G
Sbjct: 89 NTPAITFIIDQSIEYG 104
>gi|387120160|ref|YP_006286043.1| ribosome-binding factor A [Aggregatibacter actinomycetemcomitans
D7S-1]
gi|415765440|ref|ZP_11482741.1| ribosome-binding factor A [Aggregatibacter actinomycetemcomitans
D17P-3]
gi|416042464|ref|ZP_11574524.1| ribosome-binding factor A [Aggregatibacter actinomycetemcomitans
serotype a str. H5P1]
gi|416049677|ref|ZP_11576687.1| ribosome-binding factor A [Aggregatibacter actinomycetemcomitans
serotype d str. I63B]
gi|429732784|ref|ZP_19267365.1| ribosome-binding factor A [Aggregatibacter actinomycetemcomitans
Y4]
gi|347991073|gb|EGY32578.1| ribosome-binding factor A [Aggregatibacter actinomycetemcomitans
serotype a str. H5P1]
gi|347991286|gb|EGY32770.1| ribosome-binding factor A [Aggregatibacter actinomycetemcomitans
serotype d str. I63B]
gi|348653870|gb|EGY69538.1| ribosome-binding factor A [Aggregatibacter actinomycetemcomitans
D17P-3]
gi|385874652|gb|AFI86211.1| ribosome-binding factor A [Aggregatibacter actinomycetemcomitans
D7S-1]
gi|429155326|gb|EKX98008.1| ribosome-binding factor A [Aggregatibacter actinomycetemcomitans
Y4]
Length = 128
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 77/137 (56%), Gaps = 16/137 (11%)
Query: 68 RRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKV 127
+R VA++IQ+E++ +L + + + +G + T+SDV+VS+DL KV
Sbjct: 6 KRSDRVAQEIQKEIAVILQRE-------VKDPRIG-------MVTVSDVDVSSDLAYAKV 51
Query: 128 YVSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
+V+ D + +A + GL+ A Y+R+ LG+ M+LR+ PEIRFI D+S G R+ +
Sbjct: 52 FVTFLFDHDEQAIAQGMKGLEKAAPYIRTLLGKAMRLRIVPEIRFIYDQSLVEGMRMSNL 111
Query: 186 LDRIKAEKEAAKSKNKE 202
+ + E + ++ E
Sbjct: 112 VTNVVREDQKKHHEDNE 128
>gi|374323513|ref|YP_005076642.1| ribosome-binding factor A [Paenibacillus terrae HPL-003]
gi|357202522|gb|AET60419.1| ribosome-binding factor A [Paenibacillus terrae HPL-003]
Length = 116
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 67/121 (55%), Gaps = 14/121 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R V +QI++ELS ++ T+ L + +G T++ V+++ DL K+Y
Sbjct: 5 RTGRVGEQIKKELSQLIQTE-------LKDPRIG-------FITVTGVDLTNDLSQAKIY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+SV GD+ K ++ L Y+RS+LG+R++LR PE+ F DES GSR+ +L
Sbjct: 51 LSVLGDEEQKTSSLKALDKANGYLRSELGKRIRLRHIPELIFKIDESIAYGSRIEKLLSD 110
Query: 189 I 189
I
Sbjct: 111 I 111
>gi|375266549|ref|YP_005023992.1| ribosome-binding factor A [Vibrio sp. EJY3]
gi|369841869|gb|AEX23013.1| ribosome-binding factor A [Vibrio sp. EJY3]
Length = 131
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 77/136 (56%), Gaps = 16/136 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + V++Q+Q+EL+ M+L +V ++ LG + TISDVEVS DL KV+
Sbjct: 7 RTQRVSQQLQKELA-MILQREV------RDSRLG-------MVTISDVEVSRDLAYAKVF 52
Query: 129 VSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
V+ ++ E +A L+ ++R LG+R++LRLTPEIRF D + G R+ ++
Sbjct: 53 VTFLCVGEQTPESCLAALREHEVHIRMMLGKRIRLRLTPEIRFHYDNTLVEGMRMSNLVS 112
Query: 188 R-IKAEKEAAKSKNKE 202
+ A+K+ K +E
Sbjct: 113 EVVSADKQKQKDSGRE 128
>gi|91228268|ref|ZP_01262204.1| ribosome-binding factor A [Vibrio alginolyticus 12G01]
gi|269966861|ref|ZP_06180934.1| ribosome-binding factor A [Vibrio alginolyticus 40B]
gi|91188145|gb|EAS74447.1| ribosome-binding factor A [Vibrio alginolyticus 12G01]
gi|269828528|gb|EEZ82789.1| ribosome-binding factor A [Vibrio alginolyticus 40B]
Length = 131
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 77/136 (56%), Gaps = 16/136 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + VA+Q+Q+EL+ M+L +V ++ LG + TISDVEVS DL KV+
Sbjct: 7 RTQRVAQQLQKELA-MILQREV------RDSRLG-------MVTISDVEVSRDLAYAKVF 52
Query: 129 VSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
V+ ++ E +A L+ ++R LG+R++LRLTPEIRF D + G R+ ++
Sbjct: 53 VTFLCVGEQTPESCLAALREHEVHIRMMLGKRIRLRLTPEIRFHYDNTLVEGMRMSNLVS 112
Query: 188 R-IKAEKEAAKSKNKE 202
+ ++K+ K +E
Sbjct: 113 EVVSSDKQKQKDSGRE 128
>gi|152989168|ref|YP_001350785.1| ribosome-binding factor A [Pseudomonas aeruginosa PA7]
gi|452876032|ref|ZP_21953400.1| ribosome-binding factor A [Pseudomonas aeruginosa VRFPA01]
gi|166219391|sp|A6VCK0.1|RBFA_PSEA7 RecName: Full=Ribosome-binding factor A
gi|150964326|gb|ABR86351.1| ribosome-binding factor A [Pseudomonas aeruginosa PA7]
gi|452187155|gb|EME14173.1| ribosome-binding factor A [Pseudomonas aeruginosa VRFPA01]
Length = 128
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 69/126 (54%), Gaps = 16/126 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + LG L TI+ VEVS D+ KV+
Sbjct: 7 RTQRIGDQMQRELAQLIQRE-------IKDPRLG-------LVTITGVEVSRDVAHAKVF 52
Query: 129 VSVFGDDRGKEVAIAG--LKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G D + VA+ L A Y+R LG+ MKLR P++ F DES RG+ + A++
Sbjct: 53 ITVMGQDDAERVALNMEILNDAAGYLRMLLGKSMKLRSVPQLHFHYDESIRRGAELSALI 112
Query: 187 DRIKAE 192
+R AE
Sbjct: 113 ERAVAE 118
>gi|319776233|ref|YP_004138721.1| 30s ribosome binding factor [Haemophilus influenzae F3047]
gi|317450824|emb|CBY87047.1| 30s ribosome binding factor [Haemophilus influenzae F3047]
Length = 128
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 74/129 (57%), Gaps = 16/129 (12%)
Query: 68 RRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKV 127
+R +A++IQ+E++ +L + + + +G + T+SDVEVS+DL K+
Sbjct: 6 KRSDRIAQEIQKEIAVILQRE-------VKDPRIG-------MVTVSDVEVSSDLSYAKI 51
Query: 128 YVSVF--GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
+V+ D+ E ++ GL+ + Y+RS LG+ M+LR+ PEIRFI D+S G R+ +
Sbjct: 52 FVTFLFDHDETVIEQSMKGLEKASPYIRSLLGKAMRLRIVPEIRFIYDQSLVEGMRMSNL 111
Query: 186 LDRIKAEKE 194
+ + E E
Sbjct: 112 VTNVVREDE 120
>gi|262370079|ref|ZP_06063406.1| ribosome-binding factor A [Acinetobacter johnsonii SH046]
gi|381196922|ref|ZP_09904263.1| ribosome-binding factor A [Acinetobacter lwoffii WJ10621]
gi|262315118|gb|EEY96158.1| ribosome-binding factor A [Acinetobacter johnsonii SH046]
Length = 134
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 36/157 (22%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA +R+K +A +QRELS+++ + D L L TIS V+VS DL
Sbjct: 1 MAGSQRLKRMADTVQRELSELIRQEL-------------KDPRLGGLVTISAVKVSPDLG 47
Query: 124 VVKVYVSVFGDDRGKEVAIAG-------LKSKAKYVRSQLGRRMKLRLTPEIRFIEDESF 176
+VYV+V G + G E + A L + ++R +LGRR+K R+TP +RF D++
Sbjct: 48 YAEVYVTVMGRELGDEQSEAANKETLDVLNKASGFLRHELGRRIKTRITPRLRFHYDKTN 107
Query: 177 ERGSRVIAILDRIKAEKEAAKSKNKEQFESPDLPEDE 213
G+ + ++ EA K DLP DE
Sbjct: 108 AYGNYMFGLI------AEAVK----------DLPADE 128
>gi|293374139|ref|ZP_06620473.1| ribosome-binding factor A [Turicibacter sanguinis PC909]
gi|325837425|ref|ZP_08166407.1| ribosome-binding factor A [Turicibacter sp. HGF1]
gi|292647242|gb|EFF65218.1| ribosome-binding factor A [Turicibacter sanguinis PC909]
gi|325490957|gb|EGC93255.1| ribosome-binding factor A [Turicibacter sp. HGF1]
Length = 117
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 69/122 (56%), Gaps = 14/122 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
RV+ ++KQI+R+++D+++ + + + +G T++ EV+ DL K+Y
Sbjct: 5 RVQKISKQIERDVTDIIMNE-------IKDTKIG-------FVTVTGAEVTNDLSFCKIY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
SV G + +E A L ++RS+L +R+ +R PE+ F DES E G+++ +L+
Sbjct: 51 YSVLGGENRREAATKALIRSKGFIRSELSKRLSIRKVPELIFEIDESIEYGNKIDTMLNE 110
Query: 189 IK 190
++
Sbjct: 111 LR 112
>gi|339489440|ref|YP_004703968.1| ribosome-binding factor A [Pseudomonas putida S16]
gi|421529066|ref|ZP_15975615.1| ribosome-binding factor A [Pseudomonas putida S11]
gi|338840283|gb|AEJ15088.1| ribosome-binding factor A [Pseudomonas putida S16]
gi|402213455|gb|EJT84803.1| ribosome-binding factor A [Pseudomonas putida S11]
Length = 132
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 16/135 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QRELS+++ + + + +G L TI+ V+VS DL KV+
Sbjct: 7 RTQRIGDQMQRELSELIRRE-------VKDPRVG-------LVTITAVDVSRDLGHAKVF 52
Query: 129 VSVFGDDRGKEV--AIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G D V + L S A ++R LGR M+LR P++ F DES RG+ + A++
Sbjct: 53 ITVMGQDGADAVPQTLKALTSAASFLRLHLGRVMQLRSVPQLHFHFDESVSRGAHLSALI 112
Query: 187 DRIKAEKEAAKSKNK 201
+R AE K +K
Sbjct: 113 ERAVAEDRLHKDADK 127
>gi|431804508|ref|YP_007231411.1| ribosome-binding factor A [Pseudomonas putida HB3267]
gi|430795273|gb|AGA75468.1| ribosome-binding factor A [Pseudomonas putida HB3267]
Length = 132
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 16/135 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QRELS+++ + + + +G L TI+ V+VS DL KV+
Sbjct: 7 RTQRIGDQMQRELSELIRRE-------VKDPRVG-------LVTITAVDVSRDLGHAKVF 52
Query: 129 VSVFGDDRGKEV--AIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G D V + L S A ++R LGR M+LR P++ F DES RG+ + A++
Sbjct: 53 ITVMGQDGADAVPQTLKALTSAASFLRLHLGRVMQLRSVPQLHFHFDESVSRGAHLSALI 112
Query: 187 DRIKAEKEAAKSKNK 201
+R AE K +K
Sbjct: 113 ERAVAEDRLHKDGDK 127
>gi|417823765|ref|ZP_12470357.1| ribosome-binding factor A [Vibrio cholerae HE48]
gi|340048394|gb|EGR09316.1| ribosome-binding factor A [Vibrio cholerae HE48]
Length = 132
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 67/115 (58%), Gaps = 15/115 (13%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + VA+Q+Q+EL+ M+L +V ++ LG + TISDVEVS DL KV+
Sbjct: 7 RTQRVAQQLQKELA-MILQREV------RDSRLG-------MVTISDVEVSRDLAYAKVF 52
Query: 129 VSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
V+ D++ E +A L+ +R LG++++LRLTPEIRF D + G R+
Sbjct: 53 VTFLCIDEQTPESCLAALREHEVQIRMMLGKQIRLRLTPEIRFYYDNTLVEGMRM 107
>gi|416069840|ref|ZP_11583436.1| ribosome-binding factor A [Aggregatibacter actinomycetemcomitans
serotype f str. D18P1]
gi|347999593|gb|EGY40414.1| ribosome-binding factor A [Aggregatibacter actinomycetemcomitans
serotype f str. D18P1]
Length = 128
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 69/117 (58%), Gaps = 16/117 (13%)
Query: 68 RRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKV 127
+R VA++IQ+E++ +L + + + +G + T+SDV+VS+DL KV
Sbjct: 6 KRSDRVAQEIQKEIAVILQRE-------VKDPRIG-------MVTVSDVDVSSDLAYAKV 51
Query: 128 YVSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
+V+ D + +A + GL+ A Y+R+ LG+ M+LR+ PEIRFI D+S G R+
Sbjct: 52 FVTFLFDHDEQAIAEGMKGLEKAAPYIRTLLGKAMRLRIVPEIRFIYDQSLVEGMRM 108
>gi|16803367|ref|NP_464852.1| ribosome-binding factor A [Listeria monocytogenes EGD-e]
gi|46907553|ref|YP_013942.1| ribosome-binding factor A [Listeria monocytogenes serotype 4b str.
F2365]
gi|47094120|ref|ZP_00231843.1| ribosome-binding factor A [Listeria monocytogenes str. 4b H7858]
gi|47095912|ref|ZP_00233515.1| ribosome-binding factor A [Listeria monocytogenes str. 1/2a F6854]
gi|217964526|ref|YP_002350204.1| ribosome-binding factor A [Listeria monocytogenes HCC23]
gi|226223928|ref|YP_002758035.1| ribosome-binding factor A [Listeria monocytogenes serotype 4b str.
CLIP 80459]
gi|254824614|ref|ZP_05229615.1| ribosome-binding factor A [Listeria monocytogenes FSL J1-194]
gi|254828687|ref|ZP_05233374.1| ribosome-binding factor A [Listeria monocytogenes FSL N3-165]
gi|254852623|ref|ZP_05241971.1| ribosome-binding factor A [Listeria monocytogenes FSL R2-503]
gi|254912001|ref|ZP_05262013.1| ribosome-binding factor A [Listeria monocytogenes J2818]
gi|254932358|ref|ZP_05265717.1| ribosome-binding factor A [Listeria monocytogenes HPB2262]
gi|254936328|ref|ZP_05268025.1| ribosome-binding factor A [Listeria monocytogenes F6900]
gi|254992775|ref|ZP_05274965.1| ribosome-binding factor A [Listeria monocytogenes FSL J2-064]
gi|255026684|ref|ZP_05298670.1| ribosome-binding factor A [Listeria monocytogenes FSL J2-003]
gi|255030035|ref|ZP_05301986.1| ribosome-binding factor A [Listeria monocytogenes LO28]
gi|255520239|ref|ZP_05387476.1| ribosome-binding factor A [Listeria monocytogenes FSL J1-175]
gi|284801712|ref|YP_003413577.1| ribosome-binding factor A [Listeria monocytogenes 08-5578]
gi|284994854|ref|YP_003416622.1| ribosome-binding factor A [Listeria monocytogenes 08-5923]
gi|289434608|ref|YP_003464480.1| hypothetical protein lse_1243 [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|290893562|ref|ZP_06556545.1| ribosome-binding factor A [Listeria monocytogenes FSL J2-071]
gi|300765433|ref|ZP_07075415.1| ribosome-binding factor A [Listeria monocytogenes FSL N1-017]
gi|315282183|ref|ZP_07870646.1| ribosome-binding factor A [Listeria marthii FSL S4-120]
gi|315302983|ref|ZP_07873702.1| ribosome-binding factor A [Listeria ivanovii FSL F6-596]
gi|347548713|ref|YP_004855041.1| putative ribosome-binding factor A [Listeria ivanovii subsp.
ivanovii PAM 55]
gi|386008098|ref|YP_005926376.1| rbfA [Listeria monocytogenes L99]
gi|386026699|ref|YP_005947475.1| ribosome-binding factor A [Listeria monocytogenes M7]
gi|386043638|ref|YP_005962443.1| ribosome-binding factor A [Listeria monocytogenes 10403S]
gi|386046979|ref|YP_005965311.1| ribosome-binding factor A [Listeria monocytogenes J0161]
gi|386050303|ref|YP_005968294.1| ribosome-binding factor A [Listeria monocytogenes FSL R2-561]
gi|386053580|ref|YP_005971138.1| ribosome-binding factor A [Listeria monocytogenes Finland 1998]
gi|386732065|ref|YP_006205561.1| ribosome-binding factor A [Listeria monocytogenes 07PF0776]
gi|404280881|ref|YP_006681779.1| ribosome-binding factor A [Listeria monocytogenes SLCC2755]
gi|404283818|ref|YP_006684715.1| ribosome-binding factor A [Listeria monocytogenes SLCC2372]
gi|404286746|ref|YP_006693332.1| ribosome-binding factor A [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|404407764|ref|YP_006690479.1| ribosome-binding factor A [Listeria monocytogenes SLCC2376]
gi|404410625|ref|YP_006696213.1| ribosome-binding factor A [Listeria monocytogenes SLCC5850]
gi|404413403|ref|YP_006698990.1| ribosome-binding factor A [Listeria monocytogenes SLCC7179]
gi|405749669|ref|YP_006673135.1| ribosome-binding factor A [Listeria monocytogenes ATCC 19117]
gi|405752544|ref|YP_006676009.1| ribosome-binding factor A [Listeria monocytogenes SLCC2378]
gi|405755456|ref|YP_006678920.1| ribosome-binding factor A [Listeria monocytogenes SLCC2540]
gi|405758374|ref|YP_006687650.1| ribosome-binding factor A [Listeria monocytogenes SLCC2479]
gi|406704098|ref|YP_006754452.1| ribosome-binding factor A [Listeria monocytogenes L312]
gi|417313780|ref|ZP_12100487.1| ribosome-binding factor A [Listeria monocytogenes J1816]
gi|417317478|ref|ZP_12104095.1| ribosome-binding factor A [Listeria monocytogenes J1-220]
gi|422409542|ref|ZP_16486503.1| ribosome-binding factor A [Listeria monocytogenes FSL F2-208]
gi|422412796|ref|ZP_16489755.1| ribosome-binding factor A [Listeria innocua FSL S4-378]
gi|422415824|ref|ZP_16492781.1| ribosome-binding factor A [Listeria innocua FSL J1-023]
gi|422418926|ref|ZP_16495881.1| ribosome-binding factor A [Listeria seeligeri FSL N1-067]
gi|422421988|ref|ZP_16498941.1| ribosome-binding factor A [Listeria seeligeri FSL S4-171]
gi|422809407|ref|ZP_16857818.1| Ribosome-binding factor A [Listeria monocytogenes FSL J1-208]
gi|424714201|ref|YP_007014916.1| Ribosome-binding factor A [Listeria monocytogenes serotype 4b str.
LL195]
gi|424823090|ref|ZP_18248103.1| Ribosome-binding factor A [Listeria monocytogenes str. Scott A]
gi|20978582|sp|Q8Y7F4.1|RBFA_LISMO RecName: Full=Ribosome-binding factor A
gi|61215089|sp|Q71ZZ5.1|RBFA_LISMF RecName: Full=Ribosome-binding factor A
gi|254789754|sp|B8DG00.1|RBFA_LISMH RecName: Full=Ribosome-binding factor A
gi|259552014|sp|C1L2N3.1|RBFA_LISMC RecName: Full=Ribosome-binding factor A
gi|16410743|emb|CAC99405.1| rbfA [Listeria monocytogenes EGD-e]
gi|46880821|gb|AAT04119.1| ribosome-binding factor A [Listeria monocytogenes serotype 4b str.
F2365]
gi|47015658|gb|EAL06588.1| ribosome-binding factor A [Listeria monocytogenes str. 1/2a F6854]
gi|47017505|gb|EAL08315.1| ribosome-binding factor A [Listeria monocytogenes str. 4b H7858]
gi|217333796|gb|ACK39590.1| ribosome-binding factor A [Listeria monocytogenes HCC23]
gi|225876390|emb|CAS05099.1| Putative ribosome-binding factor A [Listeria monocytogenes serotype
4b str. CLIP 80459]
gi|258601091|gb|EEW14416.1| ribosome-binding factor A [Listeria monocytogenes FSL N3-165]
gi|258605938|gb|EEW18546.1| ribosome-binding factor A [Listeria monocytogenes FSL R2-503]
gi|258608918|gb|EEW21526.1| ribosome-binding factor A [Listeria monocytogenes F6900]
gi|284057274|gb|ADB68215.1| ribosome-binding factor A [Listeria monocytogenes 08-5578]
gi|284060321|gb|ADB71260.1| ribosome-binding factor A [Listeria monocytogenes 08-5923]
gi|289170852|emb|CBH27394.1| rbfA [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|290556907|gb|EFD90438.1| ribosome-binding factor A [Listeria monocytogenes FSL J2-071]
gi|293583914|gb|EFF95946.1| ribosome-binding factor A [Listeria monocytogenes HPB2262]
gi|293589965|gb|EFF98299.1| ribosome-binding factor A [Listeria monocytogenes J2818]
gi|293593852|gb|EFG01613.1| ribosome-binding factor A [Listeria monocytogenes FSL J1-194]
gi|300513870|gb|EFK40935.1| ribosome-binding factor A [Listeria monocytogenes FSL N1-017]
gi|307570908|emb|CAR84087.1| rbfA [Listeria monocytogenes L99]
gi|313608974|gb|EFR84720.1| ribosome-binding factor A [Listeria monocytogenes FSL F2-208]
gi|313614169|gb|EFR87850.1| ribosome-binding factor A [Listeria marthii FSL S4-120]
gi|313619123|gb|EFR90915.1| ribosome-binding factor A [Listeria innocua FSL S4-378]
gi|313623913|gb|EFR94023.1| ribosome-binding factor A [Listeria innocua FSL J1-023]
gi|313628651|gb|EFR97065.1| ribosome-binding factor A [Listeria ivanovii FSL F6-596]
gi|313633410|gb|EFS00246.1| ribosome-binding factor A [Listeria seeligeri FSL N1-067]
gi|313638090|gb|EFS03358.1| ribosome-binding factor A [Listeria seeligeri FSL S4-171]
gi|328468610|gb|EGF39610.1| ribosome-binding factor A [Listeria monocytogenes J1816]
gi|328475048|gb|EGF45836.1| ribosome-binding factor A [Listeria monocytogenes J1-220]
gi|332311770|gb|EGJ24865.1| Ribosome-binding factor A [Listeria monocytogenes str. Scott A]
gi|336023280|gb|AEH92417.1| ribosome-binding factor A [Listeria monocytogenes M7]
gi|345533970|gb|AEO03411.1| ribosome-binding factor A [Listeria monocytogenes J0161]
gi|345536872|gb|AEO06312.1| ribosome-binding factor A [Listeria monocytogenes 10403S]
gi|346424149|gb|AEO25674.1| ribosome-binding factor A [Listeria monocytogenes FSL R2-561]
gi|346646231|gb|AEO38856.1| ribosome-binding factor A [Listeria monocytogenes Finland 1998]
gi|346981784|emb|CBW85757.1| Putative ribosome-binding factor A [Listeria ivanovii subsp.
ivanovii PAM 55]
gi|378753021|gb|EHY63606.1| Ribosome-binding factor A [Listeria monocytogenes FSL J1-208]
gi|384390823|gb|AFH79893.1| ribosome-binding factor A [Listeria monocytogenes 07PF0776]
gi|404218869|emb|CBY70233.1| ribosome-binding factor A [Listeria monocytogenes ATCC 19117]
gi|404221744|emb|CBY73107.1| ribosome-binding factor A [Listeria monocytogenes SLCC2378]
gi|404224656|emb|CBY76018.1| ribosome-binding factor A [Listeria monocytogenes SLCC2540]
gi|404227516|emb|CBY48921.1| ribosome-binding factor A [Listeria monocytogenes SLCC2755]
gi|404230451|emb|CBY51855.1| ribosome-binding factor A [Listeria monocytogenes SLCC5850]
gi|404233320|emb|CBY54723.1| ribosome-binding factor A [Listeria monocytogenes SLCC2372]
gi|404236256|emb|CBY57658.1| ribosome-binding factor A [Listeria monocytogenes SLCC2479]
gi|404239102|emb|CBY60503.1| ribosome-binding factor A [Listeria monocytogenes SLCC7179]
gi|404241913|emb|CBY63313.1| ribosome-binding factor A [Listeria monocytogenes SLCC2376]
gi|404245675|emb|CBY03900.1| ribosome-binding factor A [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|406361128|emb|CBY67401.1| ribosome-binding factor A [Listeria monocytogenes L312]
gi|424013385|emb|CCO63925.1| Ribosome-binding factor A [Listeria monocytogenes serotype 4b str.
LL195]
gi|441471000|emb|CCQ20755.1| Ribosome-binding factor A [Listeria monocytogenes]
gi|441474127|emb|CCQ23881.1| Ribosome-binding factor A [Listeria monocytogenes N53-1]
Length = 114
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 20/121 (16%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R V++Q+++EL D+L + D L F T++ V+V+ DLQ
Sbjct: 4 RANRVSEQMKKELGDILNRKIKDPRLGFV-----------------TVTGVDVTGDLQEA 46
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
KV++S+ G D+ KE + L ++RS++GRR++LR PE+ F D S G+R+ +
Sbjct: 47 KVFISILGTDKEKENTLLALAKAHGFIRSEIGRRIRLRKVPEMSFEIDNSIAYGNRIDEL 106
Query: 186 L 186
L
Sbjct: 107 L 107
>gi|435853451|ref|YP_007314770.1| ribosome-binding factor A [Halobacteroides halobius DSM 5150]
gi|433669862|gb|AGB40677.1| ribosome-binding factor A [Halobacteroides halobius DSM 5150]
Length = 117
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 55/85 (64%), Gaps = 2/85 (2%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEI 168
+++DVEVS DL+ KV+VS+ D KE + L+S +VR+++G ++LR TPE+
Sbjct: 31 GFVSVTDVEVSGDLRHAKVFVSILDGD--KEETMEALQSAEGFVRTEIGNEIRLRHTPEV 88
Query: 169 RFIEDESFERGSRVIAILDRIKAEK 193
F D+S E+G+R+ IL+ I ++
Sbjct: 89 IFRYDDSIEKGARIFEILEDINQDE 113
>gi|293400736|ref|ZP_06644881.1| ribosome-binding factor A [Erysipelotrichaceae bacterium 5_2_54FAA]
gi|373451950|ref|ZP_09543868.1| ribosome-binding factor A [Eubacterium sp. 3_1_31]
gi|291305762|gb|EFE47006.1| ribosome-binding factor A [Erysipelotrichaceae bacterium 5_2_54FAA]
gi|371967382|gb|EHO84853.1| ribosome-binding factor A [Eubacterium sp. 3_1_31]
Length = 114
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 65/117 (55%), Gaps = 14/117 (11%)
Query: 73 VAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVF 132
+A IQ+E+S+ ++QF L + +G TI+DV V+ DL + K+YVS
Sbjct: 8 IAGIIQKEVSE------IIQFE-LKDPKIG-------FITITDVTVTNDLSIAKIYVSFL 53
Query: 133 GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRI 189
G +E + L ++RS L +R+ +R PE+ F+ D++ ERG+++ I+ +I
Sbjct: 54 GQKAREEAGMKALNRSKGFIRSALAKRLTMRKVPELHFLIDDALERGNKIEKIISKI 110
>gi|270158097|ref|ZP_06186754.1| ribosome-binding factor A [Legionella longbeachae D-4968]
gi|269990122|gb|EEZ96376.1| ribosome-binding factor A [Legionella longbeachae D-4968]
Length = 108
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLR 163
D L+ TIS V+V+ADL KVY +V DDR E+ + L + + Y+RS L R + LR
Sbjct: 16 DPRLTGFVTISAVKVAADLGHAKVYFTVLNDDR--EMVASILNAASSYLRSVLARSITLR 73
Query: 164 LTPEIRFIEDESFERGSRVIAILDRI 189
P++ F+ DES E G R+ ++D++
Sbjct: 74 TVPQLHFVYDESIEYGQRLSRLIDKV 99
>gi|417845668|ref|ZP_12491694.1| Ribosome-binding factor A [Haemophilus haemolyticus M21639]
gi|341954737|gb|EGT81210.1| Ribosome-binding factor A [Haemophilus haemolyticus M21639]
Length = 128
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 73/129 (56%), Gaps = 16/129 (12%)
Query: 68 RRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKV 127
+R VA++IQ+E++ +L + + + +G + T+SDVEVS+DL K+
Sbjct: 6 KRSDRVAQEIQKEIAVILQRE-------VKDPRIG-------MVTVSDVEVSSDLSYAKI 51
Query: 128 YVSVF--GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
+V+ D++ E + GL+ + Y+RS LG+ M+LR+ PEI FI D+S G R+ +
Sbjct: 52 FVTFLFDHDEKAIEQGMKGLEKASPYIRSLLGKAMRLRIVPEICFIYDQSLVEGMRMSNL 111
Query: 186 LDRIKAEKE 194
+ + E E
Sbjct: 112 VTNVVREDE 120
>gi|407477527|ref|YP_006791404.1| ribosome-binding factor A [Exiguobacterium antarcticum B7]
gi|407061606|gb|AFS70796.1| Ribosome-binding factor A [Exiguobacterium antarcticum B7]
Length = 113
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 66/118 (55%), Gaps = 14/118 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R VA+Q+++E++ ML+ D V V P T++ VEV+ DLQ ++
Sbjct: 4 RSNRVAEQVRKEITQMLIKD-VNDPRVKP-------------ITVTGVEVTGDLQQATIF 49
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
SV GD+ +E A GL+ ++R ++G R++LR TPE+ F D S E GSR+ +L
Sbjct: 50 YSVLGDETVREEARVGLEKSKGFMRKEIGSRIRLRKTPELLFEIDTSVEYGSRIDELL 107
>gi|416051515|ref|ZP_11577563.1| ribosome-binding factor A [Aggregatibacter actinomycetemcomitans
serotype e str. SC1083]
gi|347992948|gb|EGY34325.1| ribosome-binding factor A [Aggregatibacter actinomycetemcomitans
serotype e str. SC1083]
Length = 128
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 76/137 (55%), Gaps = 16/137 (11%)
Query: 68 RRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKV 127
+R VA++IQ+E++ +L + + + +G + T+SDV+VS DL KV
Sbjct: 6 KRSDRVAQEIQKEIAVILQRE-------VKDPRIG-------MVTVSDVDVSGDLAYAKV 51
Query: 128 YVSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
+V+ D + +A + GL+ A Y+R+ LG+ M+LR+ PEIRFI D+S G R+ +
Sbjct: 52 FVTFLFDHDEQAIAQGMKGLEKAAPYIRTLLGKAMRLRIVPEIRFIYDQSLVEGMRMSNL 111
Query: 186 LDRIKAEKEAAKSKNKE 202
+ + E + ++ E
Sbjct: 112 VTNVVREDQKKHHEDNE 128
>gi|420176889|ref|ZP_14683283.1| ribosome-binding factor A [Staphylococcus epidermidis NIHLM057]
gi|420179483|ref|ZP_14685774.1| ribosome-binding factor A [Staphylococcus epidermidis NIHLM053]
gi|394251796|gb|EJD96872.1| ribosome-binding factor A [Staphylococcus epidermidis NIHLM057]
gi|394253687|gb|EJD98683.1| ribosome-binding factor A [Staphylococcus epidermidis NIHLM053]
Length = 116
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 65/117 (55%), Gaps = 14/117 (11%)
Query: 66 NPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
N R + V +Q+++E+ D ++ +KV V TI+DVE++ DL
Sbjct: 2 NNIRAERVGEQMKQEIMD-IVNNKVKDPRV-------------GFITITDVELTNDLSQA 47
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
KVY++V G+D+ + L +++S+LG RM+LR+ PE+ F DES E G+++
Sbjct: 48 KVYLTVLGNDKEVDNTFKALHKATGFIKSELGSRMRLRIIPELTFEYDESIEYGNKI 104
>gi|116618449|ref|YP_818820.1| ribosome-binding factor A [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|227431855|ref|ZP_03913879.1| ribosome-binding factor A [Leuconostoc mesenteroides subsp.
cremoris ATCC 19254]
gi|122271351|sp|Q03WH5.1|RBFA_LEUMM RecName: Full=Ribosome-binding factor A
gi|116097296|gb|ABJ62447.1| ribosome-binding factor A [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|227352397|gb|EEJ42599.1| ribosome-binding factor A [Leuconostoc mesenteroides subsp.
cremoris ATCC 19254]
Length = 117
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 74/132 (56%), Gaps = 19/132 (14%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MANP+R +A+++QR+++D+LL K + + E T++ VE+S DLQ
Sbjct: 1 MANPQRAGRLAQEVQRDVTDLLL--KRINDPRVKEV------------TVTSVELSGDLQ 46
Query: 124 VVKVYVSVFGD---DRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGS 180
+ +Y S+ D D K AGL++ + +R +LG R+ + TPE++F+ D S + G+
Sbjct: 47 IATIYYSILSDLASDAKK--TQAGLEAASGLIRKELGSRLTVYKTPELKFVRDTSVQYGN 104
Query: 181 RVIAILDRIKAE 192
+ ++ ++ E
Sbjct: 105 HIEDLIRKLHTE 116
>gi|387771668|ref|ZP_10127826.1| ribosome-binding factor A [Haemophilus parahaemolyticus HK385]
gi|386908528|gb|EIJ73221.1| ribosome-binding factor A [Haemophilus parahaemolyticus HK385]
Length = 126
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 2/89 (2%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEV--AIAGLKSKAKYVRSQLGRRMKLRLTP 166
+ T+SDVEVS DL K++V+ D+ + + + GL+ + Y+RS +G+ M+LR+ P
Sbjct: 33 GMVTVSDVEVSRDLAYAKIFVTFLFDNDQEAINQGMKGLEKASPYIRSLVGKAMRLRIVP 92
Query: 167 EIRFIEDESFERGSRVIAILDRIKAEKEA 195
E+RFI DES G R+ ++ + E EA
Sbjct: 93 ELRFIYDESLVEGMRMSNLVSNVIREDEA 121
>gi|240949212|ref|ZP_04753556.1| ribosome-binding factor A [Actinobacillus minor NM305]
gi|240296328|gb|EER46972.1| ribosome-binding factor A [Actinobacillus minor NM305]
Length = 126
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 2/89 (2%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEV--AIAGLKSKAKYVRSQLGRRMKLRLTP 166
+ T+SDVEVS DL K++V+ D+ + + + GL+ + Y+RS +G+ M+LR+ P
Sbjct: 33 GMVTVSDVEVSRDLAYAKIFVTFLFDNDQEAIKQGMKGLEKASPYIRSLVGKAMRLRIVP 92
Query: 167 EIRFIEDESFERGSRVIAILDRIKAEKEA 195
E+RFI DES G R+ ++ + E EA
Sbjct: 93 ELRFIYDESLVEGMRMSNLVSNVIREDEA 121
>gi|293610136|ref|ZP_06692437.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|375136864|ref|YP_004997514.1| ribosome-binding factor A [Acinetobacter calcoaceticus PHEA-2]
gi|427423015|ref|ZP_18913181.1| ribosome-binding factor A [Acinetobacter baumannii WC-136]
gi|292827368|gb|EFF85732.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|325124309|gb|ADY83832.1| ribosome-binding factor A [Acinetobacter calcoaceticus PHEA-2]
gi|425700115|gb|EKU69706.1| ribosome-binding factor A [Acinetobacter baumannii WC-136]
Length = 133
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 79/146 (54%), Gaps = 20/146 (13%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA +R+K +A +QRELS+++ + L + LG L TIS V+VSAD+
Sbjct: 1 MAGSQRLKRMADSVQRELSELIRQE-------LKDPRLGG------LVTISAVKVSADMG 47
Query: 124 VVKVYVSVFGDDRGKEVAIAG-------LKSKAKYVRSQLGRRMKLRLTPEIRFIEDESF 176
+VYV+V G + G E + A L + ++R +L RR+K R+TP +RF D++
Sbjct: 48 YAEVYVTVMGRELGDEQSEAANKETLDVLNKASGFLRHELSRRIKTRITPRLRFHYDKTN 107
Query: 177 ERGSRVIAILDRIKAEKEAAKSKNKE 202
G+ + ++++ + KS ++E
Sbjct: 108 AYGNYMFGLIEKAVQDLPERKSDDQE 133
>gi|59711094|ref|YP_203870.1| ribosome-binding factor A [Vibrio fischeri ES114]
gi|71648821|sp|Q5E7L4.1|RBFA_VIBF1 RecName: Full=Ribosome-binding factor A
gi|59479195|gb|AAW84982.1| 30s ribosome binding factor [Vibrio fischeri ES114]
Length = 135
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 67/115 (58%), Gaps = 15/115 (13%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + V++Q+Q+EL+ ML + + ++ +G + TISDVEVS DL KV+
Sbjct: 7 RTQRVSQQLQKELAVMLQRE-------VRDSRIG-------MVTISDVEVSRDLAYAKVF 52
Query: 129 VSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
V+ F ++ E ++A LK +R LG+R++LRLTPEIRF D + G R+
Sbjct: 53 VTFFCVGEQTPESSLAALKEHEPSLRMMLGKRIRLRLTPEIRFTYDNTLVEGMRM 107
>gi|116872758|ref|YP_849539.1| ribosome-binding factor A [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|123460995|sp|A0AIC8.1|RBFA_LISW6 RecName: Full=Ribosome-binding factor A
gi|116741636|emb|CAK20760.1| ribosome-binding factor A [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 114
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 20/121 (16%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R V++Q+++EL D+L + D L F T++ V+V+ DLQ
Sbjct: 4 RANRVSEQMKKELGDILNRKIKDPRLGFV-----------------TVTGVDVTGDLQEA 46
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
KV++S+ G D+ KE + L ++RS++GRR++LR PE+ F D S G+R+ +
Sbjct: 47 KVFISILGTDKEKENTLLALAKAHGFIRSEIGRRIRLRKVPEMSFEIDNSIAYGNRIDEL 106
Query: 186 L 186
L
Sbjct: 107 L 107
>gi|77359944|ref|YP_339519.1| ribosome-binding factor A, role in processing of 16S rRNA
[Pseudoalteromonas haloplanktis TAC125]
gi|123588866|sp|Q3IJ52.1|RBFA_PSEHT RecName: Full=Ribosome-binding factor A
gi|76874855|emb|CAI86076.1| ribosome-binding factor A, role in processing of 16S rRNA
[Pseudoalteromonas haloplanktis TAC125]
Length = 166
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 75/147 (51%), Gaps = 16/147 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R VA+QIQ+E++ +L + + + LG + T+S VEVS DL K++
Sbjct: 6 RTDRVAQQIQKEIAVILQRE-------IKDPRLG-------MVTVSAVEVSRDLSYAKIF 51
Query: 129 VSVFG--DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++VF DD + + L Y+RS LG+R++ R+ PE++F+ D S G R+ ++
Sbjct: 52 ITVFNTQDDNAAKQSANVLNEATGYIRSLLGKRIRARIMPELKFLVDNSLMEGMRISNLV 111
Query: 187 DRIKAEKEAAKSKNKEQFESPDLPEDE 213
D I E A ++ E ED+
Sbjct: 112 DSIIREDNAKHVADETDVEDSTDHEDD 138
>gi|86157531|ref|YP_464316.1| ribosome-binding factor A [Anaeromyxobacter dehalogenans 2CP-C]
gi|123499936|sp|Q2IPZ5.1|RBFA_ANADE RecName: Full=Ribosome-binding factor A
gi|85774042|gb|ABC80879.1| ribosome-binding factor A [Anaeromyxobacter dehalogenans 2CP-C]
Length = 138
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 54/83 (65%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLR 163
D ++ T++ ++S DL+ VYVS+ GD+R ++ AGL++ A +++ ++ R ++LR
Sbjct: 28 DPRITGFVTVTGSKMSPDLKEATVYVSIHGDERVRKDTFAGLQAAAGFLQREVSRALRLR 87
Query: 164 LTPEIRFIEDESFERGSRVIAIL 186
TP +RF+ DES RG R+ +L
Sbjct: 88 NTPHLRFVYDESVARGDRIERLL 110
>gi|114331631|ref|YP_747853.1| ribosome-binding factor A [Nitrosomonas eutropha C91]
gi|122313590|sp|Q0AFJ4.1|RBFA_NITEC RecName: Full=Ribosome-binding factor A
gi|114308645|gb|ABI59888.1| ribosome-binding factor A [Nitrosomonas eutropha C91]
Length = 117
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 14/119 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R VA Q+QREL+ L+ ++++ + + T++ VEV+ D KV+
Sbjct: 7 RTLRVADQVQRELAS-LIQNEIMDPRI-------------GMITLTGVEVTRDYTYAKVF 52
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
+ G + ++A GLK A ++RSQL +++LR+ P+++F+ DES ERG ++ ++D
Sbjct: 53 YTTLGGNENAQLAEEGLKRAAGFLRSQLAGKIRLRIIPKLQFVYDESIERGIKLSRLID 111
>gi|425746011|ref|ZP_18864043.1| ribosome-binding factor A [Acinetobacter baumannii WC-323]
gi|425486660|gb|EKU53025.1| ribosome-binding factor A [Acinetobacter baumannii WC-323]
Length = 133
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 82/161 (50%), Gaps = 36/161 (22%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA +R+K +A +QRELS+++ + L + LG L TIS V+VSAD+
Sbjct: 1 MAGSQRLKRMADSVQRELSELIRQE-------LKDPRLGG------LVTISAVKVSADMG 47
Query: 124 VVKVYVSVFGDDRGKEVAIAG-------LKSKAKYVRSQLGRRMKLRLTPEIRFIEDESF 176
+VYV+V G + G + + A L + ++R +L RR+K R+TP +RF D++
Sbjct: 48 YAEVYVTVMGRELGDDQSEAANKETLDVLNKASGFLRHELSRRIKTRITPRLRFHYDKTN 107
Query: 177 ERGSRVIAILDRIKAEKEAAKSKNKEQFESPDLPEDERDWE 217
G+ + ++ EA K DLPE E+D +
Sbjct: 108 AYGNYMFGLI------AEAVK----------DLPEQEQDEQ 132
>gi|392547864|ref|ZP_10295001.1| ribosome-binding factor A, role in processing of 16S rRNA
[Pseudoalteromonas rubra ATCC 29570]
Length = 136
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 69/122 (56%), Gaps = 15/122 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R VA+QIQ+E++ +L + + + LG + T+S VEVS DL KV+
Sbjct: 6 RTDRVAQQIQKEIAVILQRE-------IKDPRLG-------MVTVSAVEVSRDLSYAKVF 51
Query: 129 VSVFGDDRGK-EVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
++V G D+ K + ++ L Y+RS LG+R++ R+ PE+RF+ D S G R+ ++D
Sbjct: 52 ITVLGGDKDKTKENLSILNEATGYIRSLLGKRIRARIMPELRFVLDNSLMEGMRISNLVD 111
Query: 188 RI 189
+
Sbjct: 112 EV 113
>gi|73662804|ref|YP_301585.1| ribosome-binding factor A [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|418576344|ref|ZP_13140490.1| ribosome-binding factor A [Staphylococcus saprophyticus subsp.
saprophyticus KACC 16562]
gi|123642449|sp|Q49X58.1|RBFA_STAS1 RecName: Full=Ribosome-binding factor A
gi|72495319|dbj|BAE18640.1| ribosome-binding factor A [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|379325406|gb|EHY92538.1| ribosome-binding factor A [Staphylococcus saprophyticus subsp.
saprophyticus KACC 16562]
Length = 114
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 49/71 (69%)
Query: 112 TISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFI 171
TI+DV+++ DL + VY++V G+++ K GL+ +++S+LG RM+LR+ PE+ F
Sbjct: 33 TITDVQLTNDLSIATVYLTVLGNEKQKADTFKGLEKAKGFIKSELGSRMRLRIIPELNFE 92
Query: 172 EDESFERGSRV 182
DES + G+++
Sbjct: 93 YDESIDYGNKI 103
>gi|416124330|ref|ZP_11595326.1| ribosome-binding factor A [Staphylococcus epidermidis FRI909]
gi|417647434|ref|ZP_12297274.1| ribosome-binding factor A [Staphylococcus epidermidis VCU144]
gi|417910869|ref|ZP_12554585.1| ribosome-binding factor A [Staphylococcus epidermidis VCU105]
gi|418325833|ref|ZP_12937036.1| ribosome-binding factor A [Staphylococcus epidermidis VCU071]
gi|418329387|ref|ZP_12940455.1| ribosome-binding factor A [Staphylococcus epidermidis 14.1.R1.SE]
gi|418411689|ref|ZP_12984955.1| ribosome-binding factor A [Staphylococcus epidermidis BVS058A4]
gi|418615520|ref|ZP_13178462.1| ribosome-binding factor A [Staphylococcus epidermidis VCU118]
gi|418622150|ref|ZP_13184906.1| ribosome-binding factor A [Staphylococcus epidermidis VCU123]
gi|418630418|ref|ZP_13192900.1| ribosome-binding factor A [Staphylococcus epidermidis VCU128]
gi|418634005|ref|ZP_13196403.1| ribosome-binding factor A [Staphylococcus epidermidis VCU129]
gi|420163395|ref|ZP_14670142.1| ribosome-binding factor A [Staphylococcus epidermidis NIHLM095]
gi|420167626|ref|ZP_14674278.1| ribosome-binding factor A [Staphylococcus epidermidis NIHLM087]
gi|420174962|ref|ZP_14681408.1| ribosome-binding factor A [Staphylococcus epidermidis NIHLM061]
gi|420187526|ref|ZP_14693546.1| ribosome-binding factor A [Staphylococcus epidermidis NIHLM039]
gi|420191247|ref|ZP_14697180.1| ribosome-binding factor A [Staphylococcus epidermidis NIHLM037]
gi|420191683|ref|ZP_14697594.1| ribosome-binding factor A [Staphylococcus epidermidis NIHLM023]
gi|420204192|ref|ZP_14709752.1| ribosome-binding factor A [Staphylococcus epidermidis NIHLM015]
gi|420206411|ref|ZP_14711921.1| ribosome-binding factor A [Staphylococcus epidermidis NIHLM008]
gi|319401440|gb|EFV89650.1| ribosome-binding factor A [Staphylococcus epidermidis FRI909]
gi|329724355|gb|EGG60867.1| ribosome-binding factor A [Staphylococcus epidermidis VCU144]
gi|341655057|gb|EGS78793.1| ribosome-binding factor A [Staphylococcus epidermidis VCU105]
gi|365227579|gb|EHM68772.1| ribosome-binding factor A [Staphylococcus epidermidis VCU071]
gi|365230422|gb|EHM71517.1| ribosome-binding factor A [Staphylococcus epidermidis 14.1.R1.SE]
gi|374816959|gb|EHR81150.1| ribosome-binding factor A [Staphylococcus epidermidis VCU118]
gi|374827525|gb|EHR91387.1| ribosome-binding factor A [Staphylococcus epidermidis VCU123]
gi|374837959|gb|EHS01517.1| ribosome-binding factor A [Staphylococcus epidermidis VCU128]
gi|374837997|gb|EHS01554.1| ribosome-binding factor A [Staphylococcus epidermidis VCU129]
gi|394235084|gb|EJD80658.1| ribosome-binding factor A [Staphylococcus epidermidis NIHLM095]
gi|394237654|gb|EJD83140.1| ribosome-binding factor A [Staphylococcus epidermidis NIHLM087]
gi|394244495|gb|EJD89837.1| ribosome-binding factor A [Staphylococcus epidermidis NIHLM061]
gi|394255968|gb|EJE00904.1| ribosome-binding factor A [Staphylococcus epidermidis NIHLM039]
gi|394257848|gb|EJE02753.1| ribosome-binding factor A [Staphylococcus epidermidis NIHLM037]
gi|394265834|gb|EJE10481.1| ribosome-binding factor A [Staphylococcus epidermidis NIHLM023]
gi|394274206|gb|EJE18631.1| ribosome-binding factor A [Staphylococcus epidermidis NIHLM015]
gi|394278250|gb|EJE22567.1| ribosome-binding factor A [Staphylococcus epidermidis NIHLM008]
gi|410891272|gb|EKS39069.1| ribosome-binding factor A [Staphylococcus epidermidis BVS058A4]
Length = 116
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 65/117 (55%), Gaps = 14/117 (11%)
Query: 66 NPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
N R + V +Q+++E+ D ++ +KV V TI+DVE++ DL
Sbjct: 2 NNIRAERVGEQMKQEIMD-IVNNKVKDPRV-------------GFLTITDVELTNDLSQA 47
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
KVY++V G+D+ + L +++S+LG RM+LR+ PE+ F DES E G+++
Sbjct: 48 KVYLTVLGNDKEVDNTFKALHKATGFIKSELGSRMRLRIIPELTFEYDESIEYGNKI 104
>gi|27467865|ref|NP_764502.1| ribosome-binding factor A [Staphylococcus epidermidis ATCC 12228]
gi|57866760|ref|YP_188419.1| ribosome-binding factor A [Staphylococcus epidermidis RP62A]
gi|282876298|ref|ZP_06285165.1| ribosome-binding factor A [Staphylococcus epidermidis SK135]
gi|417658988|ref|ZP_12308601.1| ribosome-binding factor A [Staphylococcus epidermidis VCU045]
gi|417913500|ref|ZP_12557167.1| ribosome-binding factor A [Staphylococcus epidermidis VCU109]
gi|418605314|ref|ZP_13168639.1| ribosome-binding factor A [Staphylococcus epidermidis VCU041]
gi|418607670|ref|ZP_13170893.1| ribosome-binding factor A [Staphylococcus epidermidis VCU057]
gi|418609913|ref|ZP_13173047.1| ribosome-binding factor A [Staphylococcus epidermidis VCU065]
gi|418612142|ref|ZP_13175188.1| ribosome-binding factor A [Staphylococcus epidermidis VCU117]
gi|418616642|ref|ZP_13179566.1| ribosome-binding factor A [Staphylococcus epidermidis VCU120]
gi|418624476|ref|ZP_13187151.1| ribosome-binding factor A [Staphylococcus epidermidis VCU125]
gi|418626704|ref|ZP_13189300.1| ribosome-binding factor A [Staphylococcus epidermidis VCU126]
gi|418628949|ref|ZP_13191465.1| ribosome-binding factor A [Staphylococcus epidermidis VCU127]
gi|419768071|ref|ZP_14294208.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
IS-250]
gi|419770966|ref|ZP_14297028.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
IS-K]
gi|420165196|ref|ZP_14671900.1| ribosome-binding factor A [Staphylococcus epidermidis NIHLM088]
gi|420169807|ref|ZP_14676385.1| ribosome-binding factor A [Staphylococcus epidermidis NIHLM070]
gi|420172731|ref|ZP_14679229.1| ribosome-binding factor A [Staphylococcus epidermidis NIHLM067]
gi|420182939|ref|ZP_14689072.1| ribosome-binding factor A [Staphylococcus epidermidis NIHLM049]
gi|420193994|ref|ZP_14699823.1| ribosome-binding factor A [Staphylococcus epidermidis NIHLM021]
gi|420197159|ref|ZP_14702883.1| ribosome-binding factor A [Staphylococcus epidermidis NIHLM020]
gi|420202017|ref|ZP_14707612.1| ribosome-binding factor A [Staphylococcus epidermidis NIHLM018]
gi|420209452|ref|ZP_14714889.1| ribosome-binding factor A [Staphylococcus epidermidis NIHLM003]
gi|420211841|ref|ZP_14717197.1| ribosome-binding factor A [Staphylococcus epidermidis NIHLM001]
gi|420214251|ref|ZP_14719530.1| ribosome-binding factor A [Staphylococcus epidermidis NIH05005]
gi|420216082|ref|ZP_14721304.1| ribosome-binding factor A [Staphylococcus epidermidis NIH05001]
gi|420220050|ref|ZP_14725040.1| ribosome-binding factor A [Staphylococcus epidermidis NIH04008]
gi|420221939|ref|ZP_14726864.1| ribosome-binding factor A [Staphylococcus epidermidis NIH08001]
gi|420224801|ref|ZP_14729639.1| ribosome-binding factor A [Staphylococcus epidermidis NIH06004]
gi|420227060|ref|ZP_14731833.1| ribosome-binding factor A [Staphylococcus epidermidis NIH05003]
gi|420229383|ref|ZP_14734089.1| ribosome-binding factor A [Staphylococcus epidermidis NIH04003]
gi|420231741|ref|ZP_14736386.1| ribosome-binding factor A [Staphylococcus epidermidis NIH051668]
gi|420234429|ref|ZP_14738992.1| ribosome-binding factor A [Staphylococcus epidermidis NIH051475]
gi|29427695|sp|Q8CPG2.1|RBFA_STAES RecName: Full=Ribosome-binding factor A
gi|61214666|sp|Q5HPS1.1|RBFA_STAEQ RecName: Full=Ribosome-binding factor A
gi|27315410|gb|AAO04544.1|AE016747_41 ribosome-binding factor A [Staphylococcus epidermidis ATCC 12228]
gi|57637418|gb|AAW54206.1| ribosome-binding factor A [Staphylococcus epidermidis RP62A]
gi|281295323|gb|EFA87850.1| ribosome-binding factor A [Staphylococcus epidermidis SK135]
gi|329736627|gb|EGG72893.1| ribosome-binding factor A [Staphylococcus epidermidis VCU045]
gi|341655782|gb|EGS79506.1| ribosome-binding factor A [Staphylococcus epidermidis VCU109]
gi|374402411|gb|EHQ73436.1| ribosome-binding factor A [Staphylococcus epidermidis VCU041]
gi|374403787|gb|EHQ74782.1| ribosome-binding factor A [Staphylococcus epidermidis VCU057]
gi|374406249|gb|EHQ77152.1| ribosome-binding factor A [Staphylococcus epidermidis VCU065]
gi|374820024|gb|EHR84138.1| ribosome-binding factor A [Staphylococcus epidermidis VCU117]
gi|374820720|gb|EHR84796.1| ribosome-binding factor A [Staphylococcus epidermidis VCU120]
gi|374827705|gb|EHR91566.1| ribosome-binding factor A [Staphylococcus epidermidis VCU125]
gi|374831248|gb|EHR94990.1| ribosome-binding factor A [Staphylococcus epidermidis VCU126]
gi|374834943|gb|EHR98574.1| ribosome-binding factor A [Staphylococcus epidermidis VCU127]
gi|383360992|gb|EID38375.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
IS-250]
gi|383362515|gb|EID39867.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
IS-K]
gi|394236363|gb|EJD81897.1| ribosome-binding factor A [Staphylococcus epidermidis NIHLM088]
gi|394241408|gb|EJD86822.1| ribosome-binding factor A [Staphylococcus epidermidis NIHLM067]
gi|394243107|gb|EJD88481.1| ribosome-binding factor A [Staphylococcus epidermidis NIHLM070]
gi|394249402|gb|EJD94615.1| ribosome-binding factor A [Staphylococcus epidermidis NIHLM049]
gi|394265966|gb|EJE10612.1| ribosome-binding factor A [Staphylococcus epidermidis NIHLM020]
gi|394266692|gb|EJE11317.1| ribosome-binding factor A [Staphylococcus epidermidis NIHLM021]
gi|394269990|gb|EJE14513.1| ribosome-binding factor A [Staphylococcus epidermidis NIHLM018]
gi|394278899|gb|EJE23211.1| ribosome-binding factor A [Staphylococcus epidermidis NIHLM003]
gi|394280351|gb|EJE24632.1| ribosome-binding factor A [Staphylococcus epidermidis NIHLM001]
gi|394283616|gb|EJE27781.1| ribosome-binding factor A [Staphylococcus epidermidis NIH05005]
gi|394287057|gb|EJE31031.1| ribosome-binding factor A [Staphylococcus epidermidis NIH04008]
gi|394289970|gb|EJE33840.1| ribosome-binding factor A [Staphylococcus epidermidis NIH08001]
gi|394292532|gb|EJE36274.1| ribosome-binding factor A [Staphylococcus epidermidis NIH05001]
gi|394294204|gb|EJE37890.1| ribosome-binding factor A [Staphylococcus epidermidis NIH06004]
gi|394297561|gb|EJE41158.1| ribosome-binding factor A [Staphylococcus epidermidis NIH05003]
gi|394299149|gb|EJE42700.1| ribosome-binding factor A [Staphylococcus epidermidis NIH04003]
gi|394302283|gb|EJE45731.1| ribosome-binding factor A [Staphylococcus epidermidis NIH051668]
gi|394304232|gb|EJE47639.1| ribosome-binding factor A [Staphylococcus epidermidis NIH051475]
Length = 116
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 65/117 (55%), Gaps = 14/117 (11%)
Query: 66 NPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
N R + V +Q+++E+ D ++ +KV V TI+DVE++ DL
Sbjct: 2 NNIRAERVGEQMKQEIMD-IVNNKVKDPRV-------------GFLTITDVELTNDLSQA 47
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
KVY++V G+D+ + L +++S+LG RM+LR+ PE+ F DES E G+++
Sbjct: 48 KVYLTVLGNDKEVDNTFKALHKATGFIKSELGSRMRLRIIPELTFEYDESIEYGNKI 104
>gi|90409002|ref|ZP_01217132.1| ribosome-binding factor A [Psychromonas sp. CNPT3]
gi|90309887|gb|EAS38042.1| ribosome-binding factor A [Psychromonas sp. CNPT3]
Length = 134
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 79/149 (53%), Gaps = 24/149 (16%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R V++Q+Q+EL+ ++LQ V + +G + T+S V+++ DL KV+
Sbjct: 7 RTSRVSQQVQKELA------RILQQEV-KDPRIG-------MVTVSGVDITRDLAYAKVF 52
Query: 129 VS--VFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
V+ GD E ++ GL S A Y+R LG+ M+LR+ PE+RF DE+ G R+ ++
Sbjct: 53 VTFLTIGDQTNDE-SLEGLNSAAGYIRRLLGKAMRLRIVPEVRFCFDETLTEGLRLSELV 111
Query: 187 DRIKAEKEAAKSKNKEQFESPDLPEDERD 215
A K+KE+F + E+E D
Sbjct: 112 -------SGAVKKDKEKFLAAGRDENEDD 133
>gi|429767500|ref|ZP_19299697.1| ribosome-binding factor A [Clostridium celatum DSM 1785]
gi|429180910|gb|EKY22111.1| ribosome-binding factor A [Clostridium celatum DSM 1785]
Length = 116
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 75/130 (57%), Gaps = 15/130 (11%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MAN R + + ++++RE+S+++ + D L+++ +++DV+V+ DL+
Sbjct: 1 MANYRGGR-INEEVKREISNIIRNEI-------------KDPRLTAMVSVTDVKVTKDLR 46
Query: 124 VVKVYVSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
KV+VS+FG DD K LK+ + Y+R ++G+R+ LR P+I F D+S G +
Sbjct: 47 YAKVFVSIFGKDDEEKNNTFIALKNASGYIRREIGQRINLRYNPQIIFEIDDSINYGMHI 106
Query: 183 IAILDRIKAE 192
++ ++K +
Sbjct: 107 EELIHKVKGK 116
>gi|386815624|ref|ZP_10102842.1| ribosome-binding factor A [Thiothrix nivea DSM 5205]
gi|386420200|gb|EIJ34035.1| ribosome-binding factor A [Thiothrix nivea DSM 5205]
Length = 135
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 65/123 (52%), Gaps = 15/123 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R VA+QI RELS ML+ D+V V + T+ DVEVS DL KV+
Sbjct: 12 RTDRVAEQIHRELS-MLVRDRVKDPRV-------------GMVTLLDVEVSKDLAHAKVW 57
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
V + G E A L A ++R +LG MKLR+TP + F D++ RG+ + A++D+
Sbjct: 58 FDVLQAEHGLEAQEA-LNHAAGFLRHELGHMMKLRVTPALHFFYDDTQSRGNVLSALIDK 116
Query: 189 IKA 191
A
Sbjct: 117 AVA 119
>gi|422637908|ref|ZP_16701340.1| ribosome-binding factor A [Pseudomonas syringae Cit 7]
gi|440742401|ref|ZP_20921726.1| ribosome-binding factor A [Pseudomonas syringae BRIP39023]
gi|330950304|gb|EGH50564.1| ribosome-binding factor A [Pseudomonas syringae Cit 7]
gi|440377238|gb|ELQ13887.1| ribosome-binding factor A [Pseudomonas syringae BRIP39023]
Length = 138
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 71/126 (56%), Gaps = 16/126 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + +G L TI+ V+VS D+ K++
Sbjct: 7 RTQRIGDQMQRELAQLIRRE-------IKDPRVG-------LVTITAVDVSRDVGHAKIF 52
Query: 129 VSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G D +E+A I L + A ++R QL R MKLR P++ F DES RG+ + A++
Sbjct: 53 MTVMGQDSAEEIAQTIKVLNAAAGFLRMQLAREMKLRSVPQLHFHYDESVVRGAHLSALI 112
Query: 187 DRIKAE 192
+R AE
Sbjct: 113 ERAVAE 118
>gi|337750002|ref|YP_004644164.1| protein RbfA [Paenibacillus mucilaginosus KNP414]
gi|379722853|ref|YP_005314984.1| protein RbfA [Paenibacillus mucilaginosus 3016]
gi|386725630|ref|YP_006191956.1| protein RbfA [Paenibacillus mucilaginosus K02]
gi|336301191|gb|AEI44294.1| RbfA [Paenibacillus mucilaginosus KNP414]
gi|378571525|gb|AFC31835.1| RbfA [Paenibacillus mucilaginosus 3016]
gi|384092755|gb|AFH64191.1| protein RbfA [Paenibacillus mucilaginosus K02]
Length = 118
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 69/124 (55%), Gaps = 14/124 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
RV V +QI++E+S ++ ++ L + +G T++ V+V+ D K++
Sbjct: 5 RVGRVGEQIKKEISQIIQSE-------LKDPRIG-------FITVTGVDVTNDFSQAKIF 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+SV G D KE + L ++RS+LG+R+++R PE+ F D S + GS++ ++L +
Sbjct: 51 LSVLGSDDQKEATLKALARSTGFIRSELGKRIRMRKVPELLFKFDASIDYGSKIESLLTQ 110
Query: 189 IKAE 192
I E
Sbjct: 111 INGE 114
>gi|70734338|ref|YP_257978.1| ribosome-binding factor A [Pseudomonas protegens Pf-5]
gi|123658131|sp|Q4KIF5.1|RBFA_PSEF5 RecName: Full=Ribosome-binding factor A
gi|68348637|gb|AAY96243.1| ribosome-binding factor A [Pseudomonas protegens Pf-5]
Length = 133
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 71/126 (56%), Gaps = 16/126 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + +G L TI+ VEVS D+ K++
Sbjct: 7 RTQRIGDQMQRELAQLIRRE-------VKDPRVG-------LVTITAVEVSRDVGHAKIF 52
Query: 129 VSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G + +++A I L S A ++R QL + MKLR P++ F DES RG+ + A++
Sbjct: 53 ITVMGQENAEQIAQSIKVLNSAAGFLRMQLAKEMKLRSVPQLHFHYDESVARGAHLSALI 112
Query: 187 DRIKAE 192
+R AE
Sbjct: 113 ERAVAE 118
>gi|424745501|ref|ZP_18173764.1| ribosome-binding factor A [Acinetobacter baumannii WC-141]
gi|422942194|gb|EKU37255.1| ribosome-binding factor A [Acinetobacter baumannii WC-141]
Length = 133
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 73/132 (55%), Gaps = 20/132 (15%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA +R+K +A +QRELS+++ + L + LG L TIS V+VSAD+
Sbjct: 1 MAGSQRLKRMADSVQRELSELIRQE-------LKDPRLGG------LVTISAVKVSADMG 47
Query: 124 VVKVYVSVFGDDRGKEVAIAG-------LKSKAKYVRSQLGRRMKLRLTPEIRFIEDESF 176
+VYV+V G + G E + A L + ++R +L RR+K R+TP +RF D++
Sbjct: 48 YAEVYVTVMGRELGDEQSEAANKETLEVLNKASGFLRHELSRRIKTRITPRLRFHYDKTN 107
Query: 177 ERGSRVIAILDR 188
G+ + ++++
Sbjct: 108 AYGNYMFGLIEK 119
>gi|422629072|ref|ZP_16694278.1| ribosome-binding factor A [Pseudomonas syringae pv. pisi str.
1704B]
gi|424069345|ref|ZP_17806791.1| ribosome-binding factor A [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
gi|424073730|ref|ZP_17811145.1| ribosome-binding factor A [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
gi|330937948|gb|EGH41735.1| ribosome-binding factor A [Pseudomonas syringae pv. pisi str.
1704B]
gi|407994912|gb|EKG35465.1| ribosome-binding factor A [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
gi|407995542|gb|EKG36065.1| ribosome-binding factor A [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
Length = 138
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 71/126 (56%), Gaps = 16/126 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + +G L TI+ V+VS D+ K++
Sbjct: 7 RTQRIGDQMQRELAQLIRRE-------IKDPRVG-------LVTITAVDVSRDVGHAKIF 52
Query: 129 VSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G D +E+A I L + A ++R QL R MKLR P++ F DES RG+ + A++
Sbjct: 53 MTVMGQDSAEEIAQTIKVLNAAAGFLRMQLAREMKLRSVPQLHFHYDESVVRGAHLSALI 112
Query: 187 DRIKAE 192
+R AE
Sbjct: 113 ERAVAE 118
>gi|299771781|ref|YP_003733807.1| ribosome-binding factor A [Acinetobacter oleivorans DR1]
gi|298701869|gb|ADI92434.1| ribosome-binding factor A [Acinetobacter oleivorans DR1]
Length = 133
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 73/132 (55%), Gaps = 20/132 (15%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA +R+K +A +QRELS+++ + L + LG L TIS V+VSAD+
Sbjct: 1 MAGSQRLKRMADSVQRELSELIRQE-------LKDPRLGG------LVTISAVKVSADMG 47
Query: 124 VVKVYVSVFGDDRGKEVAIAG-------LKSKAKYVRSQLGRRMKLRLTPEIRFIEDESF 176
+VYV+V G + G E + A L + ++R +L RR+K R+TP +RF D++
Sbjct: 48 YAEVYVTVMGRELGDEQSEAANKETLDVLNKASGFLRHELSRRIKTRITPRLRFHYDKTN 107
Query: 177 ERGSRVIAILDR 188
G+ + ++++
Sbjct: 108 AYGNYMFGLIEK 119
>gi|262280760|ref|ZP_06058543.1| ribosome-binding factor A [Acinetobacter calcoaceticus RUH2202]
gi|262257660|gb|EEY76395.1| ribosome-binding factor A [Acinetobacter calcoaceticus RUH2202]
Length = 133
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 73/132 (55%), Gaps = 20/132 (15%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA +R+K +A +QRELS+++ + L + LG L TIS V+VSAD+
Sbjct: 1 MAGSQRLKRMADSVQRELSELIRQE-------LKDPRLGG------LVTISAVKVSADMG 47
Query: 124 VVKVYVSVFGDDRGKEVAIAG-------LKSKAKYVRSQLGRRMKLRLTPEIRFIEDESF 176
+VYV+V G + G E + A L + ++R +L RR+K R+TP +RF D++
Sbjct: 48 YAEVYVTVMGRELGDEQSEAANKETLDVLNKASGFLRHELSRRIKTRITPRLRFHYDKTN 107
Query: 177 ERGSRVIAILDR 188
G+ + ++++
Sbjct: 108 AYGNYMFGLIEK 119
>gi|406914507|gb|EKD53676.1| ribosome-binding factor A [uncultured bacterium]
Length = 115
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 103 ADRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKL 162
A+ + + TI+ V+VS DL K++VSV +++ + IA L + AK +R L +KL
Sbjct: 27 AEDFGFGIITITSVQVSHDLSFAKIFVSVLEEEKASTI-IAALNNAAKPLRYSLANAVKL 85
Query: 163 RLTPEIRFIEDESFERGSRVIAILD 187
R+TPE++FI D+S RGSR+ ++++
Sbjct: 86 RITPELKFIYDDSIARGSRISSLIN 110
>gi|50083630|ref|YP_045140.1| ribosome-binding factor A [Acinetobacter sp. ADP1]
gi|61214998|sp|Q6FF39.1|RBFA_ACIAD RecName: Full=Ribosome-binding factor A
gi|49529606|emb|CAG67318.1| ribosome-binding factor A [Acinetobacter sp. ADP1]
Length = 133
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 73/132 (55%), Gaps = 20/132 (15%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA +R+K +A +QRELS+++ + L + LG L TIS V+VSAD+
Sbjct: 1 MAGSQRLKRMADSVQRELSELIRQE-------LKDPRLGG------LVTISAVKVSADMG 47
Query: 124 VVKVYVSVFGDDRGKEVAIAG-------LKSKAKYVRSQLGRRMKLRLTPEIRFIEDESF 176
+VYV+V G + G E + A L + ++R +L RR+K R+TP +RF D++
Sbjct: 48 YAEVYVTVMGRELGDEQSEAANKETLDVLNKASGFLRHELSRRIKTRITPRLRFHYDKTN 107
Query: 177 ERGSRVIAILDR 188
G+ + ++++
Sbjct: 108 AYGNYMFGLIEK 119
>gi|406989639|gb|EKE09405.1| Ribosome-binding factor A [uncultured bacterium]
Length = 128
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEI 168
S T+++V VS DLQ V+V G + EV +A LK +KY R ++ +++K R+ P +
Sbjct: 39 STITVTEVRVSPDLQNATVFVIPLGGKQLPEV-LAALKENSKYFRKEVAQKLKTRIAPRL 97
Query: 169 RFIEDESFERGSRVIAILDRIKAEKEAAKSK 199
F D SF+ SR+ +IL+ +KA KE +K K
Sbjct: 98 AFQADFSFDNASRIESILNSLKAPKETSKHK 128
>gi|313897482|ref|ZP_07831025.1| ribosome-binding factor A [Clostridium sp. HGF2]
gi|346314559|ref|ZP_08856078.1| ribosome-binding factor A [Erysipelotrichaceae bacterium 2_2_44A]
gi|373124070|ref|ZP_09537912.1| ribosome-binding factor A [Erysipelotrichaceae bacterium 21_3]
gi|422327171|ref|ZP_16408198.1| ribosome-binding factor A [Erysipelotrichaceae bacterium 6_1_45]
gi|312957852|gb|EFR39477.1| ribosome-binding factor A [Clostridium sp. HGF2]
gi|345906294|gb|EGX76023.1| ribosome-binding factor A [Erysipelotrichaceae bacterium 2_2_44A]
gi|371659902|gb|EHO25162.1| ribosome-binding factor A [Erysipelotrichaceae bacterium 21_3]
gi|371663865|gb|EHO29049.1| ribosome-binding factor A [Erysipelotrichaceae bacterium 6_1_45]
Length = 112
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 65/117 (55%), Gaps = 14/117 (11%)
Query: 73 VAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVF 132
+A IQ+E+S+ ++QF+ L + +G TI+DV V+ DL + K+YVS
Sbjct: 8 IAGIIQKEISE------IIQFS-LKDPKIG-------FITITDVTVTNDLSIAKIYVSFL 53
Query: 133 GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRI 189
G +E + L Y+RS+L +RM +R PE+ F D+S ERG+++ I+ I
Sbjct: 54 GQKPREEAGMKALDRSRGYLRSELAKRMTIRKVPELIFKLDDSLERGNKIERIISEI 110
>gi|417909953|ref|ZP_12553686.1| ribosome-binding factor A [Staphylococcus epidermidis VCU037]
gi|341652562|gb|EGS76350.1| ribosome-binding factor A [Staphylococcus epidermidis VCU037]
Length = 116
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 47/71 (66%)
Query: 112 TISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFI 171
TI+DVE++ DL KVY++V G+D+ + L +++S+LG RM+LR+ PE+ F
Sbjct: 34 TITDVELTNDLSQAKVYLTVLGNDKEVDNTFKALHKATGFIKSELGSRMRLRIIPELTFE 93
Query: 172 EDESFERGSRV 182
DES E G+++
Sbjct: 94 YDESIEYGNKI 104
>gi|300173101|ref|YP_003772267.1| ribosome-binding factor A [Leuconostoc gasicomitatum LMG 18811]
gi|333446491|ref|ZP_08481433.1| ribosome-binding factor A [Leuconostoc inhae KCTC 3774]
gi|299887480|emb|CBL91448.1| ribosome-binding factor A [Leuconostoc gasicomitatum LMG 18811]
Length = 117
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 75/134 (55%), Gaps = 23/134 (17%)
Query: 64 MANPRRVKMVAKQIQRELSDMLL---TDKVLQFAVLPEAALGADRYLSSLTTISDVEVSA 120
M NP+R +A+++QR+++ +LL D +Q T++ VE+S
Sbjct: 1 MVNPQRAGRLAQEVQRDVTSLLLKRINDPRVQD-----------------VTVTSVELSG 43
Query: 121 DLQVVKVYVSVFGD--DRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFER 178
DLQ+ +Y S+ D GK+ A AGL++ + +R +LG R+ + TPE++F+ D+S +
Sbjct: 44 DLQIATIYYSILSDLASDGKK-AQAGLEAASGLIRKELGSRLTVYKTPELKFVRDQSVQY 102
Query: 179 GSRVIAILDRIKAE 192
G+ + ++ ++ +E
Sbjct: 103 GNHIEDLIRKLHSE 116
>gi|422644496|ref|ZP_16707634.1| ribosome-binding factor A [Pseudomonas syringae pv. maculicola str.
ES4326]
gi|330958048|gb|EGH58308.1| ribosome-binding factor A [Pseudomonas syringae pv. maculicola str.
ES4326]
Length = 138
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 79/142 (55%), Gaps = 20/142 (14%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + +G L TI+ V+VS D+ K++
Sbjct: 7 RTQRIGDQMQRELAQLIRRE-------IKDPRVG-------LVTITAVDVSRDVGHAKIF 52
Query: 129 VSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G D +++A I L + A ++R QL R MKLR P++ F DES RG+ + A++
Sbjct: 53 MTVMGQDNAEDIAQTIKVLNAAAGFLRMQLAREMKLRSVPQLHFHYDESVVRGAHLSALI 112
Query: 187 DRIKAEKEAAKSKNKEQFESPD 208
+R A+ S++++ SPD
Sbjct: 113 ERAVAQ----DSQHQDGSASPD 130
>gi|262393383|ref|YP_003285237.1| ribosome-binding factor A [Vibrio sp. Ex25]
gi|451972564|ref|ZP_21925770.1| ribosome-binding factor A [Vibrio alginolyticus E0666]
gi|262336977|gb|ACY50772.1| ribosome-binding factor A [Vibrio sp. Ex25]
gi|451931504|gb|EMD79192.1| ribosome-binding factor A [Vibrio alginolyticus E0666]
Length = 131
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 77/136 (56%), Gaps = 16/136 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + VA+Q+Q+EL+ M+L +V ++ LG + TISDVEVS DL KV+
Sbjct: 7 RTQRVAQQLQKELA-MILQREV------RDSRLG-------MVTISDVEVSRDLAYAKVF 52
Query: 129 VSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
V+ ++ E +A L+ ++R LG+R++LRLTPEIRF D + G R+ ++
Sbjct: 53 VTFLCVGEQTPESCLAALREHEVHIRMMLGKRIRLRLTPEIRFHYDNTLVEGMRMSNLVS 112
Query: 188 R-IKAEKEAAKSKNKE 202
+ ++K+ K +E
Sbjct: 113 EVVSSDKKKQKDSGRE 128
>gi|402758719|ref|ZP_10860975.1| ribosome-binding factor A [Acinetobacter sp. NCTC 7422]
Length = 133
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 82/161 (50%), Gaps = 36/161 (22%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA +R+K +A +QRELS+++ + L + LG L TIS V+VSAD+
Sbjct: 1 MAGSQRLKRMADSVQRELSELIRQE-------LKDPRLGG------LVTISAVKVSADMG 47
Query: 124 VVKVYVSVFGDDRGKEVAIAG-------LKSKAKYVRSQLGRRMKLRLTPEIRFIEDESF 176
+VYV+V G + G + + A L + ++R +L RR+K R+TP +RF D++
Sbjct: 48 YAEVYVTVMGRELGDDQSEAANKETLDVLNKASGFLRHELSRRIKTRVTPRLRFHYDKTN 107
Query: 177 ERGSRVIAILDRIKAEKEAAKSKNKEQFESPDLPEDERDWE 217
G+ + ++ EA K DLPE E+D +
Sbjct: 108 AYGNYMFGLI------AEAVK----------DLPEQEQDEQ 132
>gi|163814222|ref|ZP_02205614.1| hypothetical protein COPEUT_00376 [Coprococcus eutactus ATCC 27759]
gi|158450671|gb|EDP27666.1| ribosome-binding factor A [Coprococcus eutactus ATCC 27759]
Length = 134
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 45/76 (59%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLR 163
D +S +T++ DV V+ DL+ K Y+SV GD + AGL S Y+R +L + LR
Sbjct: 29 DPRISPMTSVVDVVVTPDLKFCKAYISVLGDQDAVDSTFAGLTSAMGYIRRELAHSVNLR 88
Query: 164 LTPEIRFIEDESFERG 179
TPEI FI D+S E G
Sbjct: 89 NTPEITFIMDQSIEYG 104
>gi|107103842|ref|ZP_01367760.1| hypothetical protein PaerPA_01004913 [Pseudomonas aeruginosa PACS2]
gi|218893838|ref|YP_002442707.1| ribosome-binding factor A [Pseudomonas aeruginosa LESB58]
gi|254244355|ref|ZP_04937677.1| ribosome-binding factor A [Pseudomonas aeruginosa 2192]
gi|386060911|ref|YP_005977433.1| ribosome-binding factor A [Pseudomonas aeruginosa M18]
gi|416856872|ref|ZP_11912390.1| ribosome-binding factor A [Pseudomonas aeruginosa 138244]
gi|421156263|ref|ZP_15615713.1| ribosome-binding factor A [Pseudomonas aeruginosa ATCC 14886]
gi|421182817|ref|ZP_15640287.1| ribosome-binding factor A [Pseudomonas aeruginosa E2]
gi|424944470|ref|ZP_18360233.1| ribosome-binding factor A [Pseudomonas aeruginosa NCMG1179]
gi|226736650|sp|B7V1F5.1|RBFA_PSEA8 RecName: Full=Ribosome-binding factor A
gi|126197733|gb|EAZ61796.1| ribosome-binding factor A [Pseudomonas aeruginosa 2192]
gi|218774066|emb|CAW29882.1| ribosome-binding factor A [Pseudomonas aeruginosa LESB58]
gi|334841293|gb|EGM19926.1| ribosome-binding factor A [Pseudomonas aeruginosa 138244]
gi|346060916|dbj|GAA20799.1| ribosome-binding factor A [Pseudomonas aeruginosa NCMG1179]
gi|347307217|gb|AEO77331.1| ribosome-binding factor A [Pseudomonas aeruginosa M18]
gi|404519308|gb|EKA30076.1| ribosome-binding factor A [Pseudomonas aeruginosa ATCC 14886]
gi|404541259|gb|EKA50624.1| ribosome-binding factor A [Pseudomonas aeruginosa E2]
gi|453043962|gb|EME91689.1| ribosome-binding factor A [Pseudomonas aeruginosa PA21_ST175]
Length = 130
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 69/126 (54%), Gaps = 16/126 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + LG L TI+ VEVS D+ KV+
Sbjct: 7 RTQRIGDQMQRELAQLIQRE-------IKDPRLG-------LVTITGVEVSRDVAHAKVF 52
Query: 129 VSVFGDDRGKEVAIAG--LKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G D ++A+ L A Y+R LG+ MKLR P++ F DES RG+ + A++
Sbjct: 53 ITVMGQDDAGKIALNMEILNDAAGYLRMLLGKSMKLRSVPQLHFHYDESIRRGAELSALI 112
Query: 187 DRIKAE 192
+R AE
Sbjct: 113 ERAVAE 118
>gi|126652566|ref|ZP_01724731.1| ribosome-binding factor A [Bacillus sp. B14905]
gi|126590694|gb|EAZ84810.1| ribosome-binding factor A [Bacillus sp. B14905]
Length = 113
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 66/121 (54%), Gaps = 20/121 (16%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R VA+Q+++EL D+L + D + F T++ VEV+ DLQ
Sbjct: 4 RSNRVAEQMKKELGDILGRKIKDPRVGFV-----------------TVTGVEVTGDLQQA 46
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
+Y++ G++R +E I L + ++RS++G R++LR TPE+ F D S E G+R+ +
Sbjct: 47 TIYITSLGNEREREETIKALVKASGFIRSEIGSRIRLRRTPELIFEFDSSIEYGNRIDTL 106
Query: 186 L 186
L
Sbjct: 107 L 107
>gi|15599937|ref|NP_253431.1| ribosome-binding factor A [Pseudomonas aeruginosa PAO1]
gi|116052890|ref|YP_793207.1| ribosome-binding factor A [Pseudomonas aeruginosa UCBPP-PA14]
gi|296391570|ref|ZP_06881045.1| ribosome-binding factor A [Pseudomonas aeruginosa PAb1]
gi|313109724|ref|ZP_07795664.1| ribosome-binding factor A [Pseudomonas aeruginosa 39016]
gi|386063759|ref|YP_005979063.1| ribosome-binding factor A [Pseudomonas aeruginosa NCGM2.S1]
gi|392986415|ref|YP_006485002.1| ribosome-binding factor A [Pseudomonas aeruginosa DK2]
gi|416873705|ref|ZP_11917680.1| ribosome-binding factor A [Pseudomonas aeruginosa 152504]
gi|418586259|ref|ZP_13150303.1| ribosome-binding factor A [Pseudomonas aeruginosa MPAO1/P1]
gi|419751517|ref|ZP_14277928.1| ribosome-binding factor A [Pseudomonas aeruginosa PADK2_CF510]
gi|420141938|ref|ZP_14649572.1| ribosome-binding factor A [Pseudomonas aeruginosa CIG1]
gi|421163328|ref|ZP_15622049.1| ribosome-binding factor A [Pseudomonas aeruginosa ATCC 25324]
gi|421170530|ref|ZP_15628473.1| ribosome-binding factor A [Pseudomonas aeruginosa ATCC 700888]
gi|421176998|ref|ZP_15634655.1| ribosome-binding factor A [Pseudomonas aeruginosa CI27]
gi|421519304|ref|ZP_15965975.1| ribosome-binding factor A [Pseudomonas aeruginosa PAO579]
gi|451988339|ref|ZP_21936473.1| Ribosome-binding factor A [Pseudomonas aeruginosa 18A]
gi|20978658|sp|Q9HV56.1|RBFA_PSEAE RecName: Full=Ribosome-binding factor A
gi|122257099|sp|Q02FS9.1|RBFA_PSEAB RecName: Full=Ribosome-binding factor A
gi|9951005|gb|AAG08129.1|AE004888_4 ribosome-binding factor A [Pseudomonas aeruginosa PAO1]
gi|115588111|gb|ABJ14126.1| ribosome-binding factor A [Pseudomonas aeruginosa UCBPP-PA14]
gi|310882166|gb|EFQ40760.1| ribosome-binding factor A [Pseudomonas aeruginosa 39016]
gi|334844395|gb|EGM22970.1| ribosome-binding factor A [Pseudomonas aeruginosa 152504]
gi|348032318|dbj|BAK87678.1| ribosome-binding factor A [Pseudomonas aeruginosa NCGM2.S1]
gi|375043399|gb|EHS36025.1| ribosome-binding factor A [Pseudomonas aeruginosa MPAO1/P1]
gi|384401979|gb|EIE48331.1| ribosome-binding factor A [Pseudomonas aeruginosa PADK2_CF510]
gi|392321920|gb|AFM67300.1| ribosome-binding factor A [Pseudomonas aeruginosa DK2]
gi|403245245|gb|EJY59067.1| ribosome-binding factor A [Pseudomonas aeruginosa CIG1]
gi|404345223|gb|EJZ71575.1| ribosome-binding factor A [Pseudomonas aeruginosa PAO579]
gi|404523043|gb|EKA33491.1| ribosome-binding factor A [Pseudomonas aeruginosa ATCC 700888]
gi|404529139|gb|EKA39190.1| ribosome-binding factor A [Pseudomonas aeruginosa ATCC 25324]
gi|404530086|gb|EKA40099.1| ribosome-binding factor A [Pseudomonas aeruginosa CI27]
gi|451753992|emb|CCQ88996.1| Ribosome-binding factor A [Pseudomonas aeruginosa 18A]
Length = 129
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 69/126 (54%), Gaps = 16/126 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + LG L TI+ VEVS D+ KV+
Sbjct: 7 RTQRIGDQMQRELAQLIQRE-------IKDPRLG-------LVTITGVEVSRDVAHAKVF 52
Query: 129 VSVFGDDRGKEVAIAG--LKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G D ++A+ L A Y+R LG+ MKLR P++ F DES RG+ + A++
Sbjct: 53 ITVMGQDDAGKIALNMEILNDAAGYLRMLLGKSMKLRSVPQLHFHYDESIRRGAELSALI 112
Query: 187 DRIKAE 192
+R AE
Sbjct: 113 ERAVAE 118
>gi|49077912|gb|AAT49730.1| PA4743, partial [synthetic construct]
Length = 130
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 69/126 (54%), Gaps = 16/126 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + LG L TI+ VEVS D+ KV+
Sbjct: 7 RTQRIGDQMQRELAQLIQRE-------IKDPRLG-------LVTITGVEVSRDVAHAKVF 52
Query: 129 VSVFGDDRGKEVAIAG--LKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G D ++A+ L A Y+R LG+ MKLR P++ F DES RG+ + A++
Sbjct: 53 ITVMGQDDAGKIALNMEILNDAAGYLRMLLGKSMKLRSVPQLHFHYDESIRRGAELSALI 112
Query: 187 DRIKAE 192
+R AE
Sbjct: 113 ERAVAE 118
>gi|398840275|ref|ZP_10597512.1| ribosome-binding factor A [Pseudomonas sp. GM102]
gi|398856612|ref|ZP_10612332.1| ribosome-binding factor A [Pseudomonas sp. GM79]
gi|398898706|ref|ZP_10648507.1| ribosome-binding factor A [Pseudomonas sp. GM50]
gi|398998984|ref|ZP_10701738.1| ribosome-binding factor A [Pseudomonas sp. GM18]
gi|398110863|gb|EJM00757.1| ribosome-binding factor A [Pseudomonas sp. GM102]
gi|398132825|gb|EJM22082.1| ribosome-binding factor A [Pseudomonas sp. GM18]
gi|398183768|gb|EJM71241.1| ribosome-binding factor A [Pseudomonas sp. GM50]
gi|398242999|gb|EJN28598.1| ribosome-binding factor A [Pseudomonas sp. GM79]
Length = 133
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 70/126 (55%), Gaps = 16/126 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + +G L TI+ VEVS D+ K++
Sbjct: 7 RTQRIGDQMQRELAQLIRRE-------VKDPRVG-------LVTITAVEVSRDVGHAKIF 52
Query: 129 VSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G D ++A I L S A ++R QL R MKLR P++ F DES RG+ + A++
Sbjct: 53 ITVMGQDSRDDIAQSIKVLNSAAGFLRMQLAREMKLRSVPQLHFHYDESVVRGAHLSALI 112
Query: 187 DRIKAE 192
+R AE
Sbjct: 113 ERAVAE 118
>gi|333374634|ref|ZP_08466474.1| ribosome-binding factor A [Kingella kingae ATCC 23330]
gi|332975272|gb|EGK12172.1| ribosome-binding factor A [Kingella kingae ATCC 23330]
Length = 123
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 67/125 (53%), Gaps = 16/125 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R+ V +Q+ REL++++ T G + TI+DVEV+ D VY
Sbjct: 11 RIDRVKEQVMRELAELVRT--------------GLKDPRAGFITINDVEVTRDYSHATVY 56
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+V DR E ++ L+ ++RS+L RR+ + TPE+ F DES ERG ++ ++DR
Sbjct: 57 YTVLSGDR--EASLQALEHAKGFLRSELSRRITVFRTPELHFEYDESLERGVQLSNLIDR 114
Query: 189 IKAEK 193
+ +EK
Sbjct: 115 VASEK 119
>gi|403745567|ref|ZP_10954362.1| ribosome-binding factor A [Alicyclobacillus hesperidum URH17-3-68]
gi|403121285|gb|EJY55599.1| ribosome-binding factor A [Alicyclobacillus hesperidum URH17-3-68]
Length = 122
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 67/124 (54%), Gaps = 20/124 (16%)
Query: 69 RVKMVAKQIQRELSDMLLT---DKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
RV+ VA+Q+++EL++++ T D + FA TI+ VEVS DLQ
Sbjct: 5 RVQKVAEQMKKELAEIVRTSVKDPRVGFA-----------------TITHVEVSGDLQHA 47
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
KV VSV G K+ +A L A ++R ++ RR+ +R+ PE+ F DES E R+ +
Sbjct: 48 KVLVSVLGTQEEKDGTLAALTKAAGFIRGEIARRLHMRVAPELLFRLDESGEYSDRIERV 107
Query: 186 LDRI 189
L I
Sbjct: 108 LKTI 111
>gi|401564644|ref|ZP_10805522.1| ribosome-binding factor A [Selenomonas sp. FOBRC6]
gi|400188641|gb|EJO22792.1| ribosome-binding factor A [Selenomonas sp. FOBRC6]
Length = 124
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 70/129 (54%), Gaps = 14/129 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
RV+ + + I++E+SD++ F L + +G T++ V + DL+ K+Y
Sbjct: 5 RVEKLQELIKQEVSDII-------FNELKDPRIG-------FVTVTSVACTEDLREAKIY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VSV GD++ + GL+S +VR ++G+R++LR TPEI F D S + +L+
Sbjct: 51 VSVMGDEKKARDTLYGLESSLGFVRREVGKRIRLRFTPEISFALDTSLNYSDHIQRLLNE 110
Query: 189 IKAEKEAAK 197
I +K A +
Sbjct: 111 IHEDKPAGE 119
>gi|350532303|ref|ZP_08911244.1| ribosome-binding factor A [Vibrio rotiferianus DAT722]
gi|424033916|ref|ZP_17773327.1| ribosome-binding factor A [Vibrio cholerae HENC-01]
gi|424042575|ref|ZP_17780273.1| ribosome-binding factor A [Vibrio cholerae HENC-02]
gi|408874029|gb|EKM13212.1| ribosome-binding factor A [Vibrio cholerae HENC-01]
gi|408888981|gb|EKM27427.1| ribosome-binding factor A [Vibrio cholerae HENC-02]
Length = 135
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 72/125 (57%), Gaps = 15/125 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + V++Q+Q+EL+ M+L +V ++ LG + TISDVEVS DL KV+
Sbjct: 7 RTQRVSQQLQKELA-MILQREV------RDSRLG-------MVTISDVEVSRDLAYAKVF 52
Query: 129 VSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
V+ ++ E +A L+ ++R LG+R++LRLTPEIRF D + G R+ ++
Sbjct: 53 VTFLCVGEQTPESCLAALREHEVHIRMMLGKRIRLRLTPEIRFYYDNTLVEGMRMSNLVS 112
Query: 188 RIKAE 192
+ +E
Sbjct: 113 EVVSE 117
>gi|152978794|ref|YP_001344423.1| ribosome-binding factor A [Actinobacillus succinogenes 130Z]
gi|171704291|sp|A6VNE1.1|RBFA_ACTSZ RecName: Full=Ribosome-binding factor A
gi|150840517|gb|ABR74488.1| ribosome-binding factor A [Actinobacillus succinogenes 130Z]
Length = 129
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEV--AIAGLKSKAKYVRSQLGRRMKLRLTP 166
+ T+SDVEVS DL K++V+ D+ + + + GL+ A Y+RS LG+ M+LR+ P
Sbjct: 33 GMVTVSDVEVSRDLAYAKIFVTFLFDNDPEAIKQGMKGLEKAAPYIRSLLGKAMRLRIVP 92
Query: 167 EIRFIEDESFERGSRVIAILDRIKAEKEA 195
E+RF+ D+S G R+ ++ + EA
Sbjct: 93 ELRFVYDQSLVEGMRMSNLVSNVIKNDEA 121
>gi|403667573|ref|ZP_10932878.1| ribosome-binding factor A [Kurthia sp. JC8E]
Length = 118
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 68/121 (56%), Gaps = 20/121 (16%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R VA+Q+++EL D++ L D + F T++DV+V+ DLQ+
Sbjct: 5 RANRVAEQMKKELGDIIGRKLKDPRVGF-----------------ITVTDVDVTGDLQIA 47
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
VY++ G + K+ + GL+ ++RS++ +R++LR+TPE+ F D S E G+++ +
Sbjct: 48 TVYITSLGTEYEKKETLKGLEKAKGFIRSEIAKRIRLRITPELLFQFDASAEYGNKIDQL 107
Query: 186 L 186
L
Sbjct: 108 L 108
>gi|381396978|ref|ZP_09922392.1| Ribosome-binding factor A [Microbacterium laevaniformans OR221]
gi|380775937|gb|EIC09227.1| Ribosome-binding factor A [Microbacterium laevaniformans OR221]
Length = 144
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 48/78 (61%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEI 168
TI+DV V+ DLQ V+ +V+GDD+ +E + A LK+ +RS++G+R+ +RLTP +
Sbjct: 31 GFVTITDVRVTGDLQHASVFYTVYGDDQAREDSAAALKAATGMLRSEVGKRLGIRLTPSL 90
Query: 169 RFIEDESFERGSRVIAIL 186
FI D E + +L
Sbjct: 91 EFIPDALPENAGHIAQLL 108
>gi|404493176|ref|YP_006717282.1| ribosome-binding factor A [Pelobacter carbinolicus DSM 2380]
gi|123574181|sp|Q3A4A5.1|RBFA_PELCD RecName: Full=Ribosome-binding factor A
gi|77545240|gb|ABA88802.1| ribosome-binding factor A [Pelobacter carbinolicus DSM 2380]
Length = 119
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 75/130 (57%), Gaps = 15/130 (11%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
M +PR + V +Q+Q+E+S +LL L + +G TI+ V V+ D+
Sbjct: 1 MDHPRPHR-VGEQLQKEISALLLKG-------LKDPRVG-------FVTITAVSVTPDMH 45
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
+ +VY +V+G++ ++ GL+S + R +LGRR+++R P++ F D++ E G+R+
Sbjct: 46 LARVYYTVYGEEEQRKETQKGLESATPFFRRELGRRLRMRYVPDLVFEFDKALEYGNRIE 105
Query: 184 AILDRIKAEK 193
++L ++ +K
Sbjct: 106 SLLRQLNEDK 115
>gi|345430141|ref|YP_004823261.1| 30s ribosome binding factor [Haemophilus parainfluenzae T3T1]
gi|301156204|emb|CBW15675.1| 30s ribosome binding factor [Haemophilus parainfluenzae T3T1]
Length = 128
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 72/129 (55%), Gaps = 16/129 (12%)
Query: 68 RRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKV 127
+R VA+++Q+E++ +L + + + +G + T+SDVEVS+DL KV
Sbjct: 6 KRSDRVAQELQKEIATILQRE-------VKDPRIG-------MVTVSDVEVSSDLAYAKV 51
Query: 128 YVSVF--GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
+V+ D+ E + GL+ A Y+RS +G+ M+LR+ PEIRF D+S G R+ +
Sbjct: 52 FVTFLFDHDEVAIEQGMKGLEKAAPYIRSLVGKAMRLRIVPEIRFFYDQSLVEGMRMSNL 111
Query: 186 LDRIKAEKE 194
+ + E E
Sbjct: 112 VTNVVREDE 120
>gi|91200790|emb|CAJ73843.1| similar to ribosome-binding factor A [Candidatus Kuenenia
stuttgartiensis]
Length = 125
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 55/79 (69%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEI 168
S T+++V++SADL+ VKVYVSV G++ ++ + GL +++++LG ++++ TP +
Sbjct: 31 SFITVTEVDISADLKNVKVYVSVLGNELERKNTMCGLDHAKGFIQTELGSCLRIKYTPHL 90
Query: 169 RFIEDESFERGSRVIAILD 187
+F DE E+ +R++ I+D
Sbjct: 91 KFCLDELTEKRNRILKIID 109
>gi|74316714|ref|YP_314454.1| ribosome-binding factor A [Thiobacillus denitrificans ATCC 25259]
gi|123612206|sp|Q3SKX2.1|RBFA_THIDA RecName: Full=Ribosome-binding factor A
gi|74056209|gb|AAZ96649.1| ribosome-binding factor A [Thiobacillus denitrificans ATCC 25259]
Length = 124
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 68/124 (54%), Gaps = 14/124 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + VA QIQREL +++ + + + +G + TI++VEV+ D++ KVY
Sbjct: 7 RARRVADQIQRELPELIRQE-------VKDPRVG-------MLTITEVEVNRDMEFAKVY 52
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+ G + + GL+ + ++RSQL RM+LR+ P++ F+ D S E G + +++
Sbjct: 53 FTTMGGEAEHAACLQGLQRASGFLRSQLSHRMQLRVVPKLTFVYDRSVEHGMALSRLIET 112
Query: 189 IKAE 192
AE
Sbjct: 113 AVAE 116
>gi|172057845|ref|YP_001814305.1| ribosome-binding factor A [Exiguobacterium sibiricum 255-15]
gi|171990366|gb|ACB61288.1| ribosome-binding factor A [Exiguobacterium sibiricum 255-15]
Length = 113
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 67/118 (56%), Gaps = 14/118 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R VA+Q+++E++ ML+ D + + + A T++ VEV+ DLQ ++
Sbjct: 4 RSNRVAEQVRKEITQMLIKD-------VNDPRVKA-------VTVTGVEVTGDLQQATIF 49
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
SV GD+ +E A GL+ ++R ++G R++LR TPE+ F D S E GSR+ +L
Sbjct: 50 YSVLGDETVREEARVGLEKSKGFMRKEIGSRIRLRKTPELLFEIDTSVEYGSRIDELL 107
>gi|170727893|ref|YP_001761919.1| ribosome-binding factor A [Shewanella woodyi ATCC 51908]
gi|238688729|sp|B1KRQ9.1|RBFA_SHEWM RecName: Full=Ribosome-binding factor A
gi|169813240|gb|ACA87824.1| ribosome-binding factor A [Shewanella woodyi ATCC 51908]
Length = 140
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 64/108 (59%), Gaps = 3/108 (2%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDD-RGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPE 167
+ T++DVEVS DL KV+V+ F +D + E + L + + YVRS + RMKLR+ PE
Sbjct: 33 GMVTVNDVEVSRDLSYAKVFVTFFEEDSKLVEEKLEALTTASGYVRSLVAGRMKLRVMPE 92
Query: 168 IRFIEDESFERGSRVIAILDRIKAEKEAAKSK--NKEQFESPDLPEDE 213
+RF+ D S G R+ ++ RI + EA + K K++ ++ D +E
Sbjct: 93 LRFVYDASLVEGMRMSNLVTRIIHDDEAKQQKHNGKDKTDTADSEGEE 140
>gi|357059435|ref|ZP_09120277.1| ribosome-binding factor A [Selenomonas infelix ATCC 43532]
gi|355371512|gb|EHG18856.1| ribosome-binding factor A [Selenomonas infelix ATCC 43532]
Length = 124
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 70/129 (54%), Gaps = 14/129 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
RV+ + + +++E+SD++ F L + +G T++ V + DL+ K+Y
Sbjct: 5 RVEKLQELMKQEISDII-------FNELKDPRIG-------FVTVTSVACTEDLREAKIY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VSV GD++ + GL+S +VR ++G+R++LR TPEI F D S + +L+
Sbjct: 51 VSVMGDEKKARDTLHGLESSLGFVRREIGKRIRLRFTPEISFALDTSLNYSDHIQRLLNE 110
Query: 189 IKAEKEAAK 197
I +K A +
Sbjct: 111 IHEDKPAGE 119
>gi|343505234|ref|ZP_08742814.1| ribosome-binding factor A [Vibrio ichthyoenteri ATCC 700023]
gi|343509164|ref|ZP_08746453.1| ribosome-binding factor A [Vibrio scophthalmi LMG 19158]
gi|343514839|ref|ZP_08751905.1| ribosome-binding factor A [Vibrio sp. N418]
gi|342799347|gb|EGU34919.1| ribosome-binding factor A [Vibrio sp. N418]
gi|342805425|gb|EGU40690.1| ribosome-binding factor A [Vibrio scophthalmi LMG 19158]
gi|342808422|gb|EGU43577.1| ribosome-binding factor A [Vibrio ichthyoenteri ATCC 700023]
Length = 131
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 76/136 (55%), Gaps = 16/136 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + V++Q+Q+EL+ M+L +V ++ LG + TISDVEVS DL KV+
Sbjct: 7 RTQRVSQQLQKELA-MILQREV------RDSRLG-------MVTISDVEVSRDLAYTKVF 52
Query: 129 VSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
V+ ++ E +A L+ ++R LG+R++LRLTPEIRF D + G R+ ++
Sbjct: 53 VTFLCVGEQTPESCLAALREHEVHIRMMLGKRIRLRLTPEIRFYYDNTLVEGMRMSNLVS 112
Query: 188 R-IKAEKEAAKSKNKE 202
I +K+ K +E
Sbjct: 113 EVISNDKKKQKDSGRE 128
>gi|262374028|ref|ZP_06067305.1| ribosome-binding factor A [Acinetobacter junii SH205]
gi|262311039|gb|EEY92126.1| ribosome-binding factor A [Acinetobacter junii SH205]
Length = 133
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 71/130 (54%), Gaps = 20/130 (15%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA +R+K +A +QRELS+++ + L + LG L TIS V+VSADL
Sbjct: 1 MAGSQRLKRMADSVQRELSELIRQE-------LKDPRLGG------LVTISAVKVSADLG 47
Query: 124 VVKVYVSVFGDDRGKEVAIAG-------LKSKAKYVRSQLGRRMKLRLTPEIRFIEDESF 176
+VYV+V G + G E + A L + ++R +L RR+K R+TP +RF D++
Sbjct: 48 YAEVYVTVMGRELGDEQSEAANKETLDVLNKASGFLRHELSRRIKTRITPRLRFHYDKTN 107
Query: 177 ERGSRVIAIL 186
G+ + ++
Sbjct: 108 AYGNYMFGLI 117
>gi|422605000|ref|ZP_16677015.1| ribosome-binding factor A, partial [Pseudomonas syringae pv. mori
str. 301020]
gi|330888657|gb|EGH21318.1| ribosome-binding factor A [Pseudomonas syringae pv. mori str.
301020]
Length = 131
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 60/102 (58%), Gaps = 6/102 (5%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTP 166
L TI V+VS D+ K++++V G D +E+A I L S A ++R QL R MKLR P
Sbjct: 26 GLVTIPAVDVSRDVGHAKIFMTVMGQDSAEEIAQTIKVLNSAAGFLRMQLAREMKLRSVP 85
Query: 167 EIRFIEDESFERGSRVIAILDRIKAEKEAAKSKNKEQFESPD 208
++ F DES RG+ + A+++R A+ +++E SPD
Sbjct: 86 QLHFHYDESVVRGAHLSALIERAVAQ----DGQHQEGSASPD 123
>gi|37199640|dbj|BAC95471.1| ribosome-binding factor A [Vibrio vulnificus YJ016]
Length = 148
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 80/139 (57%), Gaps = 19/139 (13%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + V++Q+Q+EL+ M+L +V ++ LG + TISDVEVS DL KV+
Sbjct: 24 RTQRVSQQLQKELA-MILQREV------RDSRLG-------MVTISDVEVSRDLAYAKVF 69
Query: 129 VSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSR----VI 183
V+ ++ E +A L+ ++R LG+R++LRLTPE+RF D + G R V
Sbjct: 70 VTFLCVGEQTPESCLAALREHEVHIRMMLGKRIRLRLTPEVRFYYDNTLVEGMRMSNLVT 129
Query: 184 AILDRIKAEKEAAKSKNKE 202
++++ K +++ A +++E
Sbjct: 130 EVVNKDKIKQKDAGREDEE 148
>gi|237808989|ref|YP_002893429.1| ribosome-binding factor A [Tolumonas auensis DSM 9187]
gi|259552120|sp|C4L8X3.1|RBFA_TOLAT RecName: Full=Ribosome-binding factor A
gi|237501250|gb|ACQ93843.1| ribosome-binding factor A [Tolumonas auensis DSM 9187]
Length = 134
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 76/148 (51%), Gaps = 21/148 (14%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R VA+QIQRE+ AV+ + + R + T+SDVE++ DLQ K++
Sbjct: 7 RADRVAQQIQREI------------AVILQREVKDPRV--GMVTVSDVELTRDLQHAKIF 52
Query: 129 VSVFGDDRGK-EVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
V+ F ++ E + L + Y+R +G+ MKLR+ PEIRF+ D++ G R+ ++
Sbjct: 53 VTFFLNEVDDIEAGVKVLNDASGYIRILMGKAMKLRVVPEIRFVYDKTLVEGMRISNLV- 111
Query: 188 RIKAEKEAAKSKNKEQFESPDLPEDERD 215
+ + ESPD E++RD
Sbjct: 112 -----TNTVRDDQLRRGESPDQNEEDRD 134
>gi|224476398|ref|YP_002634004.1| ribosome-binding factor A [Staphylococcus carnosus subsp. carnosus
TM300]
gi|254789763|sp|B9DPD6.1|RBFA_STACT RecName: Full=Ribosome-binding factor A
gi|222421005|emb|CAL27819.1| putative ribosome-binding factor A [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 115
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 68/114 (59%), Gaps = 14/114 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + V +Q+++EL D ++ +KV + +G TI+DV+V+ DL + KVY
Sbjct: 5 RAERVGEQMKKELMD-IINNKV------KDPRIG-------FITITDVQVTNDLSLAKVY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
++V G+++ + L+ +++S+LG RM+LR+ PE++F D S E G+++
Sbjct: 51 LTVLGNEKEVDDTFKALEKAKGFIKSELGSRMRLRIVPELQFEYDHSIEYGNKI 104
>gi|359783684|ref|ZP_09286895.1| ribosome-binding factor A [Pseudomonas psychrotolerans L19]
gi|359368388|gb|EHK68968.1| ribosome-binding factor A [Pseudomonas psychrotolerans L19]
Length = 127
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 70/127 (55%), Gaps = 17/127 (13%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + LG + TI+ V+V+ DL KV+
Sbjct: 7 RTQRIGDQMQRELALLIQRE-------IKDPRLG-------MVTITGVDVARDLSHAKVH 52
Query: 129 VSVFGDDRGKEVA---IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
++V G D + I LK A ++R QLGR MKLR P++ F DES RG+++ A+
Sbjct: 53 ITVLGKDDDADAIKQNIGILKDAAGFLRQQLGRAMKLRTVPQLSFQYDESIRRGAQLSAL 112
Query: 186 LDRIKAE 192
++R AE
Sbjct: 113 IERAVAE 119
>gi|254361247|ref|ZP_04977390.1| ribosome binding factor A [Mannheimia haemolytica PHL213]
gi|261492529|ref|ZP_05989082.1| ribosome binding factor A [Mannheimia haemolytica serotype A2 str.
BOVINE]
gi|261496804|ref|ZP_05993178.1| ribosome binding factor A [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|452745246|ref|ZP_21945082.1| ribosome-binding factor A [Mannheimia haemolytica serotype 6 str.
H23]
gi|153092743|gb|EDN73786.1| ribosome binding factor A [Mannheimia haemolytica PHL213]
gi|261307551|gb|EEY08880.1| ribosome binding factor A [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|261311688|gb|EEY12838.1| ribosome binding factor A [Mannheimia haemolytica serotype A2 str.
BOVINE]
gi|452086639|gb|EME03026.1| ribosome-binding factor A [Mannheimia haemolytica serotype 6 str.
H23]
Length = 126
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEV--AIAGLKSKAKYVRSQLGRRMKLRLTP 166
+ T+SDVEVS DL K++V+ D+ + + + GL+ + Y+R+ LG+ M+LR+ P
Sbjct: 33 GMVTVSDVEVSRDLAYAKIFVTFLFDNDAEAIKQGMQGLEKASPYIRTLLGKAMRLRIVP 92
Query: 167 EIRFIEDESFERGSRV 182
E+RFI DES G R+
Sbjct: 93 ELRFIYDESLVEGMRM 108
>gi|342217548|ref|ZP_08710190.1| ribosome-binding factor A [Megasphaera sp. UPII 135-E]
gi|341593895|gb|EGS36713.1| ribosome-binding factor A [Megasphaera sp. UPII 135-E]
Length = 115
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 68/118 (57%), Gaps = 14/118 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R++ V + I++E+SD++L D + + LG T++D +++ DL+ +Y
Sbjct: 5 RIRKVQEFIKQEVSDIILHD-------IKDPRLG-------FVTVTDAKITGDLREATIY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
VS+FG + K+ + L+ A Y RS++G+R+ +R TP I F ED S + G ++ +L
Sbjct: 51 VSLFGKETQKKETLQVLQRSAGYFRSEVGKRLGIRYTPSITFEEDTSLDYGMKIDQLL 108
>gi|261867881|ref|YP_003255803.1| ribosome-binding factor A [Aggregatibacter actinomycetemcomitans
D11S-1]
gi|415768462|ref|ZP_11483764.1| ribosome-binding factor A [Aggregatibacter actinomycetemcomitans
D17P-2]
gi|416107590|ref|ZP_11590557.1| ribosome-binding factor A [Aggregatibacter actinomycetemcomitans
serotype c str. SCC2302]
gi|444346635|ref|ZP_21154599.1| ribosome-binding factor A [Aggregatibacter actinomycetemcomitans
serotype c str. AAS4A]
gi|261413213|gb|ACX82584.1| ribosome-binding factor A [Aggregatibacter actinomycetemcomitans
D11S-1]
gi|348005139|gb|EGY45628.1| ribosome-binding factor A [Aggregatibacter actinomycetemcomitans
serotype c str. SCC2302]
gi|348658031|gb|EGY75609.1| ribosome-binding factor A [Aggregatibacter actinomycetemcomitans
D17P-2]
gi|443541453|gb|ELT51880.1| ribosome-binding factor A [Aggregatibacter actinomycetemcomitans
serotype c str. AAS4A]
Length = 128
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 76/137 (55%), Gaps = 16/137 (11%)
Query: 68 RRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKV 127
+R VA++IQ+E++ +L + + + +G + T+SDV+VS+DL KV
Sbjct: 6 KRSDRVAQEIQKEIAVILQRE-------VKDPRIG-------MVTVSDVDVSSDLAYAKV 51
Query: 128 YVSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
+V+ D + +A + GL+ A Y+R+ LG+ M+L + PEIRFI D+S G R+ +
Sbjct: 52 FVTFLFDHDEQAIAQGMKGLEKAAPYIRTLLGKAMRLWIVPEIRFIYDQSLVEGMRMSNL 111
Query: 186 LDRIKAEKEAAKSKNKE 202
+ + E + K+ E
Sbjct: 112 VTNVVREDQKKHHKDNE 128
>gi|299534738|ref|ZP_07048068.1| ribosome-binding factor A [Lysinibacillus fusiformis ZC1]
gi|424737091|ref|ZP_18165547.1| ribosome-binding factor A [Lysinibacillus fusiformis ZB2]
gi|298729826|gb|EFI70371.1| ribosome-binding factor A [Lysinibacillus fusiformis ZC1]
gi|422948923|gb|EKU43299.1| ribosome-binding factor A [Lysinibacillus fusiformis ZB2]
Length = 113
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 67/121 (55%), Gaps = 20/121 (16%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R VA+Q+++EL D+L + D + F T++ VEV+ DLQ
Sbjct: 4 RSNRVAEQMKKELGDILGRKIKDPRVGFV-----------------TVTGVEVTGDLQQA 46
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
+Y++ G++R +E + L + ++RS++G R++LR TPE+ F D S E G+R+ ++
Sbjct: 47 TIYITSLGNEREREETLKALVKASGFIRSEIGSRIRLRRTPELIFEFDSSIEYGNRIDSL 106
Query: 186 L 186
L
Sbjct: 107 L 107
>gi|121535263|ref|ZP_01667077.1| ribosome-binding factor A [Thermosinus carboxydivorans Nor1]
gi|121306148|gb|EAX47076.1| ribosome-binding factor A [Thermosinus carboxydivorans Nor1]
Length = 117
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 71/125 (56%), Gaps = 14/125 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
RV+ + + I++E+S ++LT+ L + +G T++ VEVS DL+ K++
Sbjct: 5 RVEKIQEFIKQEVSKIILTE-------LKDPRIG-------FVTVTRVEVSGDLRYAKIF 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+S+ G D K AGL Y+R+++G+ + +R PE+ DES + +R+ +L++
Sbjct: 51 LSLMGSDEEKAGTWAGLHRALGYIRTEIGKHLGIRHVPELSLHLDESLQYSARIQELLNK 110
Query: 189 IKAEK 193
IK E+
Sbjct: 111 IKHEE 115
>gi|325290359|ref|YP_004266540.1| ribosome-binding factor A [Syntrophobotulus glycolicus DSM 8271]
gi|324965760|gb|ADY56539.1| ribosome-binding factor A [Syntrophobotulus glycolicus DSM 8271]
Length = 124
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 58/94 (61%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEI 168
T++DVEV+ DL+ K+YVS+ G + + ++ L + +VRS+LG+ ++LR PEI
Sbjct: 31 GFITLTDVEVAEDLRYAKLYVSIMGSEEEVKNSLEALNRASGFVRSELGKTVRLRYVPEI 90
Query: 169 RFIEDESFERGSRVIAILDRIKAEKEAAKSKNKE 202
F D+S E+G+ + +L + + ++A + KE
Sbjct: 91 SFKYDQSIEQGAHISKLLREVGLKGDSADGEEKE 124
>gi|359428369|ref|ZP_09219404.1| ribosome-binding factor A [Acinetobacter sp. NBRC 100985]
gi|358236154|dbj|GAB00943.1| ribosome-binding factor A [Acinetobacter sp. NBRC 100985]
Length = 133
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 80/159 (50%), Gaps = 36/159 (22%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA +R+K +A +QRELS+++ + L + LG L TIS V+VSAD+
Sbjct: 1 MAGSQRLKRMADSVQRELSELIRQE-------LKDPRLGG------LVTISAVKVSADMG 47
Query: 124 VVKVYVSVFGDDRGKEVAIAG-------LKSKAKYVRSQLGRRMKLRLTPEIRFIEDESF 176
+VYV+V G + G E + A L + ++R +L RR+K R+TP +RF D++
Sbjct: 48 YAEVYVTVMGRELGDEQSEAANKETLDVLNKASGFLRHELSRRIKTRITPRLRFHYDKTN 107
Query: 177 ERGSRVIAILDRIKAEKEAAKSKNKEQFESPDLPEDERD 215
G+ + ++ EA K DLPE +D
Sbjct: 108 AYGNYMFGLI------AEAVK----------DLPEQGQD 130
>gi|322514413|ref|ZP_08067456.1| ribosome-binding factor A [Actinobacillus ureae ATCC 25976]
gi|322119661|gb|EFX91719.1| ribosome-binding factor A [Actinobacillus ureae ATCC 25976]
Length = 137
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 56/89 (62%), Gaps = 2/89 (2%)
Query: 109 SLTTISDVEVSADLQVVKVYVS-VFGDDRGK-EVAIAGLKSKAKYVRSQLGRRMKLRLTP 166
+ T+SDVEVS DL K++V+ +F +D+ E + GL+ + Y+RS +G+ M+LR+ P
Sbjct: 43 GMVTVSDVEVSRDLAYAKIFVTFLFDNDQSAIEQGMKGLEKASPYIRSLVGKAMRLRIVP 102
Query: 167 EIRFIEDESFERGSRVIAILDRIKAEKEA 195
E+RFI D+S G R+ ++ + EA
Sbjct: 103 ELRFIYDQSLVEGMRMSNLVSNVIKNDEA 131
>gi|189345845|ref|YP_001942374.1| ribosome-binding factor A [Chlorobium limicola DSM 245]
gi|238692178|sp|B3EFB2.1|RBFA_CHLL2 RecName: Full=Ribosome-binding factor A
gi|189339992|gb|ACD89395.1| ribosome-binding factor A [Chlorobium limicola DSM 245]
Length = 119
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 68/124 (54%), Gaps = 17/124 (13%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + VA +Q+EL +L + LP + S+L+T+ DV+V+ADL + ++Y
Sbjct: 4 RTEKVASLLQQELGAILEKE-------LPRS--------SALSTVVDVKVTADLGIARIY 48
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMK--LRLTPEIRFIEDESFERGSRVIAIL 186
VSV G + + +A L + KY+R L +++ R PEI F ED +ER SR+ +L
Sbjct: 49 VSVIGTEEQRTAIMAWLHDETKYLRKLLSAKIRHHFRRIPEIEFFEDRIYERASRIEQLL 108
Query: 187 DRIK 190
++
Sbjct: 109 REVR 112
>gi|355642725|ref|ZP_09052859.1| ribosome-binding factor A [Pseudomonas sp. 2_1_26]
gi|354830163|gb|EHF14218.1| ribosome-binding factor A [Pseudomonas sp. 2_1_26]
Length = 129
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 70/126 (55%), Gaps = 16/126 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + LG L TI+ VEVS D+ KV+
Sbjct: 7 RTQRIGDQMQRELAQLIQRE-------IKDPRLG-------LVTITGVEVSRDVAHAKVF 52
Query: 129 VSVFG-DDRGK-EVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G DD GK + + L A Y+R LG+ MKLR P++ F DES RG+ + A++
Sbjct: 53 ITVMGQDDTGKIALNMEILNDAAGYLRMLLGKSMKLRSVPQLHFHYDESIRRGAELSALI 112
Query: 187 DRIKAE 192
+R AE
Sbjct: 113 ERAVAE 118
>gi|388547462|ref|ZP_10150726.1| ribosome-binding factor A [Pseudomonas sp. M47T1]
gi|388274383|gb|EIK93981.1| ribosome-binding factor A [Pseudomonas sp. M47T1]
Length = 133
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 71/126 (56%), Gaps = 16/126 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + +G L TI+ V+VS D+ KV+
Sbjct: 7 RTQRIGDQMQRELAQLIRRE-------VKDPRVG-------LVTITAVDVSRDVGHAKVF 52
Query: 129 VSVFGDDRGKEV--AIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G D +++ I L S A ++R LG+ MKLR P++ F DES RG+++ A++
Sbjct: 53 ITVMGQDSAEDIKQTIKVLNSAAGFLRVHLGKEMKLRSVPQLHFHYDESVTRGAQLSALI 112
Query: 187 DRIKAE 192
+R AE
Sbjct: 113 ERAVAE 118
>gi|156975662|ref|YP_001446569.1| ribosome-binding factor A [Vibrio harveyi ATCC BAA-1116]
gi|156527256|gb|ABU72342.1| hypothetical protein VIBHAR_03395 [Vibrio harveyi ATCC BAA-1116]
Length = 137
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 71/125 (56%), Gaps = 15/125 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + V++Q+Q+EL+ M+L +V ++ LG + TISDVEVS DL KV+
Sbjct: 9 RTQRVSQQLQKELA-MILQREV------RDSRLG-------MVTISDVEVSRDLAYAKVF 54
Query: 129 VSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
V+ ++ E +A L+ ++R LG+R++LRLTPEIRF D + G R+ ++
Sbjct: 55 VTFLCVGEQTPESCLAALREHEVHIRMMLGKRIRLRLTPEIRFYYDNTLVEGMRMSNLVS 114
Query: 188 RIKAE 192
+ E
Sbjct: 115 EVVNE 119
>gi|381401690|ref|ZP_09926583.1| ribosome-binding factor A [Kingella kingae PYKK081]
gi|380833249|gb|EIC13124.1| ribosome-binding factor A [Kingella kingae PYKK081]
Length = 123
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 66/125 (52%), Gaps = 16/125 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R+ V +Q+ REL++++ T G + TI+DVEV+ D VY
Sbjct: 11 RIDRVKEQVMRELAELVRT--------------GLKDPRAGFITINDVEVTRDYSHATVY 56
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+V DR E + L+ ++RS+L RR+ + TPE+ F DES ERG ++ ++DR
Sbjct: 57 YTVLNGDR--EASAQALEHAKGFLRSELSRRITVFRTPELHFEYDESLERGVQLSNLIDR 114
Query: 189 IKAEK 193
+ +EK
Sbjct: 115 VASEK 119
>gi|113969371|ref|YP_733164.1| ribosome-binding factor A [Shewanella sp. MR-4]
gi|122944045|sp|Q0HLG0.1|RBFA_SHESM RecName: Full=Ribosome-binding factor A
gi|113884055|gb|ABI38107.1| ribosome-binding factor A [Shewanella sp. MR-4]
Length = 146
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 86/158 (54%), Gaps = 25/158 (15%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + +Q+Q+EL+ +L D + + +G T++DV+VS DL KV+
Sbjct: 7 RTRRIGQQLQQELAVVLQRD-------MKDPRIG-------FVTVNDVDVSRDLSYAKVF 52
Query: 129 VSVFGDDRGKEVA---IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
V+ F +D KEV + L + A Y+R+ + RMKLR+ PEIRF+ D S G R+ +
Sbjct: 53 VTFFEED--KEVVQEKLNALIAAAPYIRTLVAGRMKLRVMPEIRFVYDSSLVEGMRMSNL 110
Query: 186 LDRIKAEKEAAKSKNKEQFESP-DLPEDERDWEGDDPD 222
+ ++ +A ++QF S D+ E++ D E DD +
Sbjct: 111 VSQVINSDKA----KQQQFGSADDVTENDID-EADDTE 143
>gi|299144049|ref|ZP_07037129.1| ribosome-binding factor A [Peptoniphilus sp. oral taxon 386 str.
F0131]
gi|298518534|gb|EFI42273.1| ribosome-binding factor A [Peptoniphilus sp. oral taxon 386 str.
F0131]
Length = 117
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 70/124 (56%), Gaps = 13/124 (10%)
Query: 66 NPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
N +R ++++++R +SD ++Q + D + + +IS V+V+ DL
Sbjct: 2 NNKRTHQISEEVRRAISD------IVQHKL-------KDPRIPDIISISHVDVTNDLSFA 48
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
KVY+S+ DD E AI G+ S +++ +L + +K+R PE+ F++D+S E G ++ I
Sbjct: 49 KVYISILDDDNKIEEAINGINSAKGFIKRELAKLVKIRAIPELIFVKDDSIEIGMKMSKI 108
Query: 186 LDRI 189
++ +
Sbjct: 109 IEEV 112
>gi|407692359|ref|YP_006817148.1| ribosome-binding factor A [Actinobacillus suis H91-0380]
gi|407388416|gb|AFU18909.1| ribosome-binding factor A [Actinobacillus suis H91-0380]
Length = 127
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 61/97 (62%), Gaps = 5/97 (5%)
Query: 109 SLTTISDVEVSADLQVVKVYVS-VFGDDRGK-EVAIAGLKSKAKYVRSQLGRRMKLRLTP 166
+ T+SDVEVS DL K++V+ +F +D+ E + GL+ + Y+RS +G+ M+LR+ P
Sbjct: 33 GMVTVSDVEVSRDLAYAKIFVTFLFDNDQSAIEQGMKGLEKASPYIRSLVGKAMRLRIVP 92
Query: 167 EIRFIEDESFERGSRVIAILDRIKAEKEAAKSKNKEQ 203
E+RFI D+S G R+ ++ + EA K+KE+
Sbjct: 93 ELRFIYDQSLVEGMRMSNLVSNVIKNDEA---KHKEE 126
>gi|269792601|ref|YP_003317505.1| ribosome-binding factor A [Thermanaerovibrio acidaminovorans DSM
6589]
gi|269100236|gb|ACZ19223.1| ribosome-binding factor A [Thermanaerovibrio acidaminovorans DSM
6589]
Length = 137
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 77/151 (50%), Gaps = 20/151 (13%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R++ + K+ RE+S +LL +V DR + + ++ V S DL V KVY
Sbjct: 5 RIERLNKEFLREIS-LLLQGRVKD-----------DR--AKMAILTGVSCSKDLSVAKVY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+V + +EV + GL+ + +R LGR M+LR PE RFI D++ +R RV AILD
Sbjct: 51 FTVLDRSKVEEVRL-GLEGASGLIRGMLGREMRLRKIPEFRFIYDDTEDRAGRVDAILDS 109
Query: 189 IKAEKEAAKSKNKEQFESPDLPEDERDWEGD 219
I + E+ L ED ++ EGD
Sbjct: 110 IAPTPAMGNQDDIEE-----LDEDWQEEEGD 135
>gi|153835029|ref|ZP_01987696.1| ribosome-binding factor A [Vibrio harveyi HY01]
gi|269961981|ref|ZP_06176336.1| ribosome-binding factor A [Vibrio harveyi 1DA3]
gi|388602409|ref|ZP_10160805.1| ribosome-binding factor A [Vibrio campbellii DS40M4]
gi|424047593|ref|ZP_17785152.1| ribosome-binding factor A [Vibrio cholerae HENC-03]
gi|444425450|ref|ZP_21220891.1| ribosome-binding factor A [Vibrio campbellii CAIM 519 = NBRC 15631]
gi|172044101|sp|A7MZI4.2|RBFA_VIBHB RecName: Full=Ribosome-binding factor A
gi|148868506|gb|EDL67605.1| ribosome-binding factor A [Vibrio harveyi HY01]
gi|269833304|gb|EEZ87408.1| ribosome-binding factor A [Vibrio harveyi 1DA3]
gi|408883831|gb|EKM22598.1| ribosome-binding factor A [Vibrio cholerae HENC-03]
gi|444241312|gb|ELU52838.1| ribosome-binding factor A [Vibrio campbellii CAIM 519 = NBRC 15631]
Length = 135
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 71/125 (56%), Gaps = 15/125 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + V++Q+Q+EL+ M+L +V ++ LG + TISDVEVS DL KV+
Sbjct: 7 RTQRVSQQLQKELA-MILQREV------RDSRLG-------MVTISDVEVSRDLAYAKVF 52
Query: 129 VSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
V+ ++ E +A L+ ++R LG+R++LRLTPEIRF D + G R+ ++
Sbjct: 53 VTFLCVGEQTPESCLAALREHEVHIRMMLGKRIRLRLTPEIRFYYDNTLVEGMRMSNLVS 112
Query: 188 RIKAE 192
+ E
Sbjct: 113 EVVNE 117
>gi|381336821|ref|YP_005174596.1| ribosome-binding factor A [Leuconostoc mesenteroides subsp.
mesenteroides J18]
gi|356644787|gb|AET30630.1| ribosome-binding factor A [Leuconostoc mesenteroides subsp.
mesenteroides J18]
Length = 117
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 73/132 (55%), Gaps = 19/132 (14%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MANP+R +A+++QR+++D+LL K + + E T++ VE+S DLQ
Sbjct: 1 MANPQRAGRLAQEVQRDVTDLLL--KRINDPRVKEV------------TVTSVELSGDLQ 46
Query: 124 VVKVYVSVFGD---DRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGS 180
+ +Y S+ D D K GL++ + +R +LG R+ + TPE++F+ D S + G+
Sbjct: 47 IATIYYSILSDLASDAKK--TQTGLEAASGLIRKELGSRLTVYKTPELKFVRDTSVQYGN 104
Query: 181 RVIAILDRIKAE 192
+ ++ ++ E
Sbjct: 105 HIEDLIRKLHTE 116
>gi|442611763|ref|ZP_21026466.1| Ribosome-binding factor A [Pseudoalteromonas luteoviolacea B = ATCC
29581]
gi|441746508|emb|CCQ12528.1| Ribosome-binding factor A [Pseudoalteromonas luteoviolacea B = ATCC
29581]
Length = 136
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 78/141 (55%), Gaps = 18/141 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R VA+QIQ+E++ ++ + + + LG L T+S VEVS DL K++
Sbjct: 6 RTDRVAQQIQKEIALIIQRE-------IKDPRLG-------LVTVSAVEVSRDLSYAKIF 51
Query: 129 VSVFG---DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
++V +D+ K+ ++ L ++RS LG+R++ R+ PE+RF+ D S G R+ +
Sbjct: 52 ITVLNTNDEDKTKQ-SVKLLNEATGFIRSLLGKRIRARIMPELRFVVDTSLMEGMRISNL 110
Query: 186 LDRIKAEKEAAKSKNKEQFES 206
+D + E A + ++EQ +S
Sbjct: 111 VDSVIREDNAKRKDDEEQNDS 131
>gi|169827170|ref|YP_001697328.1| ribosome-binding factor A [Lysinibacillus sphaericus C3-41]
gi|168991658|gb|ACA39198.1| Ribosome-binding factor A [Lysinibacillus sphaericus C3-41]
Length = 113
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 66/121 (54%), Gaps = 20/121 (16%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R VA+Q+++EL D+L + D + F T++ VEV+ DLQ
Sbjct: 4 RSNRVAEQMKKELGDILGRKIKDPRVGFV-----------------TVTGVEVTGDLQQA 46
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
+Y++ G++R +E + L + ++RS++G R++LR TPE+ F D S E G+R+ +
Sbjct: 47 TIYITSLGNEREREETLKALVKASGFIRSEIGSRIRLRRTPELIFEFDSSIEYGNRIDTL 106
Query: 186 L 186
L
Sbjct: 107 L 107
>gi|262163942|ref|ZP_06031681.1| ribosome-binding factor A [Vibrio mimicus VM223]
gi|449146637|ref|ZP_21777410.1| Ribosome-binding factor A [Vibrio mimicus CAIM 602]
gi|262027470|gb|EEY46136.1| ribosome-binding factor A [Vibrio mimicus VM223]
gi|449077869|gb|EMB48830.1| Ribosome-binding factor A [Vibrio mimicus CAIM 602]
Length = 132
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 67/115 (58%), Gaps = 15/115 (13%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + VA+Q+Q+EL+ M+L +V ++ LG + TISDVEVS DL KV+
Sbjct: 7 RTQRVAQQLQKELA-MILQREV------RDSRLG-------MVTISDVEVSRDLAYAKVF 52
Query: 129 VSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
V+ ++ E +A L+ ++R LG++++LRLTPEIRF D + G R+
Sbjct: 53 VTFLCIGEQTPESCLAALREHEVHIRMMLGKQIRLRLTPEIRFYYDNTLVEGMRM 107
>gi|417656576|ref|ZP_12306259.1| ribosome-binding factor A [Staphylococcus epidermidis VCU028]
gi|418664811|ref|ZP_13226277.1| ribosome-binding factor A [Staphylococcus epidermidis VCU081]
gi|329736237|gb|EGG72509.1| ribosome-binding factor A [Staphylococcus epidermidis VCU028]
gi|374410257|gb|EHQ81018.1| ribosome-binding factor A [Staphylococcus epidermidis VCU081]
Length = 116
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 14/117 (11%)
Query: 66 NPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
N R + V +Q+++E+ D ++ +KV V TI+DVE++ DL
Sbjct: 2 NNIRAERVGEQMKQEIMD-IVNNKVKDPRV-------------GFLTITDVELTNDLSQA 47
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
KVY++V G+D+ + L +++S LG RM+LR+ PE+ F DES E G+++
Sbjct: 48 KVYLTVLGNDKEVDNTFKALHKATGFIKSGLGSRMRLRIIPELTFEYDESIEYGNKI 104
>gi|258620314|ref|ZP_05715352.1| ribosome-binding factor A [Vibrio mimicus VM573]
gi|262172280|ref|ZP_06039958.1| ribosome-binding factor A [Vibrio mimicus MB-451]
gi|424809618|ref|ZP_18234995.1| ribosome-binding factor A [Vibrio mimicus SX-4]
gi|258587193|gb|EEW11904.1| ribosome-binding factor A [Vibrio mimicus VM573]
gi|261893356|gb|EEY39342.1| ribosome-binding factor A [Vibrio mimicus MB-451]
gi|342323106|gb|EGU18892.1| ribosome-binding factor A [Vibrio mimicus SX-4]
Length = 132
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 67/115 (58%), Gaps = 15/115 (13%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + VA+Q+Q+EL+ M+L +V ++ LG + TISDVEVS DL KV+
Sbjct: 7 RTQRVAQQLQKELA-MILQREV------RDSRLG-------MVTISDVEVSRDLAYAKVF 52
Query: 129 VSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
V+ ++ E +A L+ ++R LG++++LRLTPEIRF D + G R+
Sbjct: 53 VTFLCVGEQTPESCLAALREHEVHIRMMLGKQIRLRLTPEIRFYYDNTLVEGMRM 107
>gi|426403534|ref|YP_007022505.1| hypothetical protein Bdt_1543 [Bdellovibrio bacteriovorus str.
Tiberius]
gi|425860202|gb|AFY01238.1| hypothetical protein Bdt_1543 [Bdellovibrio bacteriovorus str.
Tiberius]
Length = 134
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 75/135 (55%), Gaps = 14/135 (10%)
Query: 61 VKCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSA 120
+K M + RRV V ++IQ ++ L+ G L L T++ V++ A
Sbjct: 1 MKNMGDGRRVARVEREIQATIAQFLIR--------------GFKTPLPGLVTVASVKMPA 46
Query: 121 DLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGS 180
DL+ KVYVSV GD++ ++ A+ L+ +A +++ +G+ +K+R P++ F D + E+
Sbjct: 47 DLRAAKVYVSVLGDEKQQDEALDLLQDRAFEIQNYIGKELKMRYCPKLTFYLDHATEQVL 106
Query: 181 RVIAILDRIKAEKEA 195
+V IL ++ E++A
Sbjct: 107 KVEKILHELELERKA 121
>gi|312885212|ref|ZP_07744891.1| ribosome-binding factor A [Vibrio caribbenthicus ATCC BAA-2122]
gi|309367152|gb|EFP94725.1| ribosome-binding factor A [Vibrio caribbenthicus ATCC BAA-2122]
Length = 136
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 80/154 (51%), Gaps = 25/154 (16%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + VA+Q+Q+EL+ +LQ V ++ LG + TISDVEVS DL KV+
Sbjct: 7 RTQRVAQQLQKELA------LILQREV-RDSRLG-------MVTISDVEVSRDLAYAKVF 52
Query: 129 VSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
V+ ++ E + L+ ++R LG+R++LRLTPE+RF D + G R+ ++
Sbjct: 53 VTFLCVGEQTPESCLEALREHEVHIRMMLGKRIRLRLTPEVRFYYDNTLVEGMRMSNLVS 112
Query: 188 RIKAEKEAAKSKNKEQFESPDLPEDERDWEGDDP 221
+ + K K+Q D DE D GDD
Sbjct: 113 EV-----VNQDKRKQQ----DSGRDE-DLSGDDS 136
>gi|441503629|ref|ZP_20985631.1| Ribosome-binding factor A [Photobacterium sp. AK15]
gi|441428705|gb|ELR66165.1| Ribosome-binding factor A [Photobacterium sp. AK15]
Length = 131
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 75/135 (55%), Gaps = 15/135 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + VA+Q+Q+EL AV+ + + R ++TTIS V+VS D+ KVY
Sbjct: 7 RTQRVAQQLQKEL------------AVILQREIKDPRL--AMTTISSVDVSRDMGYAKVY 52
Query: 129 VSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
V+ ++ E ++ L+ A Y+RS LG++++LR+TPE+ FI D+S G R+ +++
Sbjct: 53 VTFLTVGEQTAEDSLEALREMAPYIRSLLGKQIRLRVTPELNFIFDQSLTEGMRISSLVT 112
Query: 188 RIKAEKEAAKSKNKE 202
+ + E + E
Sbjct: 113 KAVRDDEVRRGDETE 127
>gi|71276361|ref|ZP_00652638.1| Ribosome-binding factor A [Xylella fastidiosa Dixon]
gi|170729434|ref|YP_001774867.1| ribosome-binding factor A [Xylella fastidiosa M12]
gi|238687909|sp|B0U1Q9.1|RBFA_XYLFM RecName: Full=Ribosome-binding factor A
gi|71162823|gb|EAO12548.1| Ribosome-binding factor A [Xylella fastidiosa Dixon]
gi|71731603|gb|EAO33664.1| Ribosome-binding factor A [Xylella fastidiosa Ann-1]
gi|167964227|gb|ACA11237.1| ribosomal-binding factor A [Xylella fastidiosa M12]
Length = 125
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 70/119 (58%), Gaps = 15/119 (12%)
Query: 68 RRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKV 127
+R + ++ QI+R+L +Q AV D L S++ +SDVEV+ D+ KV
Sbjct: 7 QRTERISVQIRRDLG------AFVQAAV-------RDHGLPSMS-VSDVEVTRDMAHAKV 52
Query: 128 YVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
+V+V +R E A+AGLK+ A+ +R QL + M+LR PE+ F D+S +RG R+ +L
Sbjct: 53 FVTVLQAERSFE-AVAGLKALARELRMQLAQTMRLRFVPELHFHYDDSLDRGERINTLL 110
>gi|399521914|ref|ZP_10762579.1| rbfA [Pseudomonas pseudoalcaligenes CECT 5344]
gi|399109949|emb|CCH39139.1| rbfA [Pseudomonas pseudoalcaligenes CECT 5344]
Length = 130
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 71/126 (56%), Gaps = 16/126 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + LG L TI+ V+VS D+ KV+
Sbjct: 7 RTQRIGDQMQRELAQLIRRE-------VKDPRLG-------LVTITAVDVSRDIGHAKVF 52
Query: 129 VSVFGDDRGKEV--AIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G D + + ++ L A ++R QLG+ MKLR P++ F DES +RG+ + A++
Sbjct: 53 ITVMGQDDAEAIKESLKVLNDAAGFLRMQLGKAMKLRSVPQLHFHYDESVQRGAHLSALI 112
Query: 187 DRIKAE 192
+R AE
Sbjct: 113 ERAVAE 118
>gi|168704067|ref|ZP_02736344.1| probable ribosome-binding factor A [Gemmata obscuriglobus UQM 2246]
Length = 163
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 66/117 (56%), Gaps = 16/117 (13%)
Query: 112 TISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFI 171
T++ EVSADLQ KV+VSV G ++ + + + GLKS A YV++++ R+ R P + FI
Sbjct: 34 TVTRAEVSADLQHAKVFVSVMGSEKEQSLTMHGLKSAAAYVQTKIADRLTSRYVPHVTFI 93
Query: 172 EDESFERGSRVIAIL----DRIKAEKEAAKSKNKEQFESPDLPEDERDWEGDDPDED 224
DE ++ + I+ +R++A++ AA++ PE E GD P+ D
Sbjct: 94 LDEGVKKSIEIARIIREENERLEADRGAAQTP----------PEGEPG--GDSPESD 138
>gi|114046598|ref|YP_737148.1| ribosome-binding factor A [Shewanella sp. MR-7]
gi|123326767|sp|Q0HXR4.1|RBFA_SHESR RecName: Full=Ribosome-binding factor A
gi|113888040|gb|ABI42091.1| ribosome-binding factor A [Shewanella sp. MR-7]
Length = 146
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 86/158 (54%), Gaps = 25/158 (15%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + +Q+Q+EL+ +L D + + +G T++DV+VS DL KV+
Sbjct: 7 RTRRIGQQLQQELAVVLQRD-------MKDPRIG-------FVTVNDVDVSRDLSYAKVF 52
Query: 129 VSVFGDDRGKEVA---IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
V+ F +D KEV + L + A Y+R+ + RMKLR+ PEIRF+ D S G R+ +
Sbjct: 53 VTFFEED--KEVVQEKLNALIAAAPYIRTLVAGRMKLRVMPEIRFVYDSSLVEGMRMSNL 110
Query: 186 LDRIKAEKEAAKSKNKEQFES-PDLPEDERDWEGDDPD 222
+ ++ +A ++QF S D+ E++ D E DD +
Sbjct: 111 VSQVINSDKA----KQQQFGSVDDVTENDID-EADDTE 143
>gi|449102976|ref|ZP_21739723.1| ribosome-binding factor A [Treponema denticola AL-2]
gi|448965778|gb|EMB46439.1| ribosome-binding factor A [Treponema denticola AL-2]
Length = 132
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 78/154 (50%), Gaps = 26/154 (16%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R+ + +QI+ E+S ++ + K+ D +SSL +I+ V VS DL KVY
Sbjct: 5 RLARLGEQIREEISALICSGKI------------KDPRVSSLLSINRVIVSGDLAYAKVY 52
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VS F D+ + + GL++ + ++R+ L +++ +R PE+ FI D+S + G ++ L+
Sbjct: 53 VSSFLDEHKTKQGVRGLENASGFIRTSLAKKLHIRQCPELTFIFDKSIKEGIDMVNKLES 112
Query: 189 IKAEKEAAKSKNKEQFESPDLPEDERDWEGDDPD 222
+ E F PD EDE+ + D
Sbjct: 113 L------------EYFTEPD--EDEKSAGNSEAD 132
>gi|26991394|ref|NP_746819.1| ribosome-binding factor A [Pseudomonas putida KT2440]
gi|148549778|ref|YP_001269880.1| ribosome-binding factor A [Pseudomonas putida F1]
gi|386013913|ref|YP_005932190.1| protein RbfA [Pseudomonas putida BIRD-1]
gi|395445465|ref|YP_006385718.1| ribosome-binding factor A [Pseudomonas putida ND6]
gi|397693406|ref|YP_006531286.1| ribosome-binding factor A [Pseudomonas putida DOT-T1E]
gi|421523924|ref|ZP_15970551.1| ribosome-binding factor A [Pseudomonas putida LS46]
gi|32171601|sp|Q88DV8.1|RBFA_PSEPK RecName: Full=Ribosome-binding factor A
gi|166219394|sp|A5W986.1|RBFA_PSEP1 RecName: Full=Ribosome-binding factor A
gi|24986463|gb|AAN70283.1|AE016669_1 ribosome-binding factor A [Pseudomonas putida KT2440]
gi|148513836|gb|ABQ80696.1| ribosome-binding factor A [Pseudomonas putida F1]
gi|313500619|gb|ADR61985.1| RbfA [Pseudomonas putida BIRD-1]
gi|388559462|gb|AFK68603.1| ribosome-binding factor A [Pseudomonas putida ND6]
gi|397330136|gb|AFO46495.1| Ribosome-binding factor A [Pseudomonas putida DOT-T1E]
gi|402752169|gb|EJX12676.1| ribosome-binding factor A [Pseudomonas putida LS46]
Length = 132
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 77/140 (55%), Gaps = 20/140 (14%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL++++ + + + +G L TI+ V+VS DL KV+
Sbjct: 7 RTQRIGDQMQRELAELIRRE-------VKDPRVG-------LVTITAVDVSRDLGHAKVF 52
Query: 129 VSVFGDDRGKEV--AIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G++ V ++ L S A ++R LGR M+LR P++ F DES RG + A++
Sbjct: 53 ITVMGEETPDAVQQSLKALNSAASFLRLHLGRSMQLRSVPQLHFHFDESVSRGVHLSALI 112
Query: 187 DRIKAE----KEAAKSKNKE 202
+R AE K+A +S KE
Sbjct: 113 ERAVAEDRLHKDADESDTKE 132
>gi|393201678|ref|YP_006463520.1| ribosome-binding factor A [Solibacillus silvestris StLB046]
gi|406664554|ref|ZP_11072329.1| Ribosome-binding factor A [Bacillus isronensis B3W22]
gi|327441009|dbj|BAK17374.1| ribosome-binding factor A [Solibacillus silvestris StLB046]
gi|405387402|gb|EKB46826.1| Ribosome-binding factor A [Bacillus isronensis B3W22]
Length = 114
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 53/85 (62%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEI 168
T++DV V+ DLQ VY++ G+DR + + L+ + ++RS++G R++LR TPE+
Sbjct: 30 GFVTVTDVAVTGDLQQATVYITSLGNDRERAETLQALEKASGFIRSEVGSRIRLRRTPEL 89
Query: 169 RFIEDESFERGSRVIAILDRIKAEK 193
F D + E G+++ A+L + EK
Sbjct: 90 AFEFDTAIEYGNKIDALLRGLHEEK 114
>gi|332290221|ref|YP_004421073.1| ribosome-binding factor A [Gallibacterium anatis UMN179]
gi|330433117|gb|AEC18176.1| ribosome-binding factor A [Gallibacterium anatis UMN179]
Length = 128
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 58/96 (60%), Gaps = 2/96 (2%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEV--AIAGLKSKAKYVRSQLGRRMKLRLTP 166
+ T+SDVEVS DL K++V+ D+ +++ + GL + Y+RS LG+ M+LR+ P
Sbjct: 33 GMVTVSDVEVSRDLAYAKIFVTFLFDEDEQQIEQGMLGLHKASPYIRSLLGKAMRLRIVP 92
Query: 167 EIRFIEDESFERGSRVIAILDRIKAEKEAAKSKNKE 202
E+RF+ D S G R+ ++ ++ + +A ++E
Sbjct: 93 ELRFVYDNSLVEGMRMSNLVTKVINQDKAKHHDDQE 128
>gi|71280573|ref|YP_268929.1| ribosome-binding factor A [Colwellia psychrerythraea 34H]
gi|123632666|sp|Q482T8.1|RBFA_COLP3 RecName: Full=Ribosome-binding factor A
gi|71146313|gb|AAZ26786.1| ribosome-binding factor A [Colwellia psychrerythraea 34H]
Length = 142
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 71/124 (57%), Gaps = 15/124 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R V +QIQ+E++ +L+ + + + L S+TT+S VEV+ DL K++
Sbjct: 7 RTDRVGQQIQKEIATILMRE-------IKDPRL-------SMTTVSAVEVTRDLAYAKIF 52
Query: 129 VSVFGDDRGK-EVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
V+ F D++ + + ++ L Y+RS LG+R++ R+ P +RF+ D S G R+ A++D
Sbjct: 53 VTFFNDNQDEIKASLEVLAEAEGYIRSLLGKRLRARIMPHLRFVYDSSMSEGVRMSALVD 112
Query: 188 RIKA 191
+ A
Sbjct: 113 QAVA 116
>gi|386390428|ref|ZP_10075217.1| ribosome-binding factor A [Haemophilus paraphrohaemolyticus HK411]
gi|385693153|gb|EIG23808.1| ribosome-binding factor A [Haemophilus paraphrohaemolyticus HK411]
Length = 126
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 61/96 (63%), Gaps = 5/96 (5%)
Query: 109 SLTTISDVEVSADLQVVKVYVS-VFGDDRGKEV-AIAGLKSKAKYVRSQLGRRMKLRLTP 166
+ T+SDVEVS DL K++V+ +F +D+ V + GL+ + Y+RS +G+ M+LR+ P
Sbjct: 33 GMVTVSDVEVSRDLAYAKIFVTFLFDNDQDAIVQGMKGLEKASPYIRSLVGKAMRLRIVP 92
Query: 167 EIRFIEDESFERGSRVIAILDRIKAEKEAAKSKNKE 202
E+RFI DES G R+ ++ + E K+K+KE
Sbjct: 93 ELRFIYDESLVEGMRMSNLVSNVIRED---KAKHKE 125
>gi|334128531|ref|ZP_08502419.1| ribosome-binding factor A [Centipeda periodontii DSM 2778]
gi|333387208|gb|EGK58411.1| ribosome-binding factor A [Centipeda periodontii DSM 2778]
Length = 124
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 66/121 (54%), Gaps = 14/121 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
RV+ + + I++E+SD++ F L + +G T++ V + DL+ K+Y
Sbjct: 5 RVEKLQELIKQEVSDII-------FNELKDPRIG-------FVTVTSVACTEDLREAKIY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VSV GD++ ++ GL S +VR ++G+R++LR TPEI F D S + +L+
Sbjct: 51 VSVMGDEKKARDSLYGLNSSLGFVRREIGKRIRLRFTPEISFALDTSLNYSDHIQRLLNE 110
Query: 189 I 189
I
Sbjct: 111 I 111
>gi|222151110|ref|YP_002560264.1| ribosome-binding factor A [Macrococcus caseolyticus JCSC5402]
gi|254789755|sp|B9EBF7.1|RBFA_MACCJ RecName: Full=Ribosome-binding factor A
gi|222120233|dbj|BAH17568.1| ribosome-binding factor A [Macrococcus caseolyticus JCSC5402]
Length = 114
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 57/85 (67%), Gaps = 3/85 (3%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEI 168
T+++VEV+ DL + VYV+V G+++ ++ ++ GL+ +++S++ RM LR+ P++
Sbjct: 30 GFVTVTEVEVTGDLSLASVYVTVLGEEKERKKSLEGLEKSKGFIKSEIAHRMDLRIVPDL 89
Query: 169 RFIEDESFERGS---RVIAILDRIK 190
+F DES + G+ R+IA L+R K
Sbjct: 90 KFKYDESIDYGNKIERMIAELNRDK 114
>gi|167035702|ref|YP_001670933.1| ribosome-binding factor A [Pseudomonas putida GB-1]
gi|189039552|sp|B0KHX7.1|RBFA_PSEPG RecName: Full=Ribosome-binding factor A
gi|166862190|gb|ABZ00598.1| ribosome-binding factor A [Pseudomonas putida GB-1]
Length = 132
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 77/140 (55%), Gaps = 20/140 (14%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL++++ + + + +G L TI+ V+VS DL KV+
Sbjct: 7 RTQRIGDQMQRELAELIRRE-------VKDPRVG-------LVTITAVDVSRDLGHAKVF 52
Query: 129 VSVFGDDRGKEV--AIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G++ V ++ L S A ++R LGR M+LR P++ F DES RG + A++
Sbjct: 53 ITVMGEETPDAVQQSLKALNSAASFLRLHLGRSMQLRSVPQLHFHFDESVSRGVHLSALI 112
Query: 187 DRIKAE----KEAAKSKNKE 202
+R AE K+A +S KE
Sbjct: 113 ERAVAEDRLHKDADESGTKE 132
>gi|365967674|ref|YP_004949236.1| ribosome-binding factor A [Aggregatibacter actinomycetemcomitans
ANH9381]
gi|416074913|ref|ZP_11584761.1| ribosome-binding factor A [Aggregatibacter actinomycetemcomitans
serotype b str. SCC1398]
gi|416090323|ref|ZP_11588063.1| ribosome-binding factor A [Aggregatibacter actinomycetemcomitans
serotype b str. I23C]
gi|444337585|ref|ZP_21151533.1| ribosome-binding factor A [Aggregatibacter actinomycetemcomitans
serotype b str. SCC4092]
gi|348006528|gb|EGY46937.1| ribosome-binding factor A [Aggregatibacter actinomycetemcomitans
serotype b str. SCC1398]
gi|348009223|gb|EGY49395.1| ribosome-binding factor A [Aggregatibacter actinomycetemcomitans
serotype b str. I23C]
gi|365746587|gb|AEW77492.1| ribosome-binding factor A [Aggregatibacter actinomycetemcomitans
ANH9381]
gi|443546662|gb|ELT56288.1| ribosome-binding factor A [Aggregatibacter actinomycetemcomitans
serotype b str. SCC4092]
Length = 128
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 76/137 (55%), Gaps = 16/137 (11%)
Query: 68 RRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKV 127
+R VA++IQ+E++ +L + + + +G + T+SDV+VS+DL KV
Sbjct: 6 KRSDRVAQEIQKEIAVILQRE-------VKDPRIG-------MVTVSDVDVSSDLAYAKV 51
Query: 128 YVSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
+V+ D + +A + GL+ A Y+R+ LG+ M+LR+ PEIRFI D+ G R+ +
Sbjct: 52 FVTFLFDHDEQAIAQGMKGLEKAAPYIRTLLGKAMRLRIVPEIRFIYDQYLVEGMRMSNL 111
Query: 186 LDRIKAEKEAAKSKNKE 202
+ + E + ++ E
Sbjct: 112 VTNVVREDQKKHHEDNE 128
>gi|153869167|ref|ZP_01998841.1| Ribosome-binding factor A [Beggiatoa sp. PS]
gi|152074289|gb|EDN71159.1| Ribosome-binding factor A [Beggiatoa sp. PS]
Length = 122
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 65/119 (54%), Gaps = 14/119 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + QIQREL+D++ + V LG + T+S +++S DL+ +VY
Sbjct: 6 RTQRLGVQIQRELADIIRREIV-------NPHLG-------MLTVSSIDLSPDLKYARVY 51
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
++V G+ +G + I L A +R L +R+ R TP ++F+ D S E SR+ A+++
Sbjct: 52 MTVLGEQQGVKYTIQHLNQVAGRLRYHLSQRLTTRTTPRLKFVHDNSIEESSRLSALIN 110
>gi|399907832|ref|ZP_10776384.1| ribosome-binding factor A [Halomonas sp. KM-1]
Length = 138
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 68/126 (53%), Gaps = 16/126 (12%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
M +R V Q+Q+EL+ VL + + LG + T+S V VS DL
Sbjct: 1 MREFKRTDRVGDQLQKELA-------VLIQREVKDPRLG-------MVTVSGVTVSRDLG 46
Query: 124 VVKVYVSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSR 181
VYV++ G+D + + + LK A ++RSQ+ RR+KLR PE+RF DES RG R
Sbjct: 47 YADVYVTLLGEDSPERIKENLKVLKQAAGFLRSQIARRIKLRHVPELRFHYDESVVRGQR 106
Query: 182 VIAILD 187
+ +++D
Sbjct: 107 LSSLID 112
>gi|260771813|ref|ZP_05880731.1| ribosome-binding factor A [Vibrio metschnikovii CIP 69.14]
gi|260613105|gb|EEX38306.1| ribosome-binding factor A [Vibrio metschnikovii CIP 69.14]
Length = 131
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 78/139 (56%), Gaps = 19/139 (13%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + VA+Q+Q+EL+ M+L +V ++ LG + TISDVEVS DL KV+
Sbjct: 7 RTQRVAQQLQKELA-MILQREV------RDSRLG-------MVTISDVEVSRDLAYAKVF 52
Query: 129 VSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSR----VI 183
V+ ++ E I L+ ++R LG+R++LRLTPEIRF D + G R V
Sbjct: 53 VTFLCIGEQTPESCIKALREHEVHIRMMLGKRIRLRLTPEIRFHYDNTLVEGMRMSNLVT 112
Query: 184 AILDRIKAEKEAAKSKNKE 202
++++ K ++ A +++E
Sbjct: 113 EVVNQDKRRQQDAGREDEE 131
>gi|420199053|ref|ZP_14704737.1| ribosome-binding factor A [Staphylococcus epidermidis NIHLM031]
gi|394272739|gb|EJE17189.1| ribosome-binding factor A [Staphylococcus epidermidis NIHLM031]
Length = 116
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 66/117 (56%), Gaps = 14/117 (11%)
Query: 66 NPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
N R + V +Q+++E+ D ++ +KV + +G TI+D E++ DL
Sbjct: 2 NNIRAERVGEQMKQEIMD-IVNNKV------KDPRVG-------FLTITDFELTNDLSQA 47
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
KVY++V G+D+ + L +++S+LG RM+LR+ PE+ F DES E G+++
Sbjct: 48 KVYLTVLGNDKEVDNTFKALHKATGFIKSELGSRMRLRIIPELTFEYDESIEYGNKI 104
>gi|359439070|ref|ZP_09229050.1| ribosome-binding factor A [Pseudoalteromonas sp. BSi20311]
gi|358026304|dbj|GAA65299.1| ribosome-binding factor A [Pseudoalteromonas sp. BSi20311]
Length = 135
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 69/129 (53%), Gaps = 16/129 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R VA+QIQ+E++ +L + + + LG + T+S VEVS DL KV+
Sbjct: 6 RTDRVAQQIQKEIAVILQRE-------IKDPRLG-------MVTVSAVEVSRDLSYAKVF 51
Query: 129 VSVFG--DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++VF D+ + + L Y+RS LG+R++ R+ PE++F+ D S G R+ ++
Sbjct: 52 ITVFNTEDENAAKQSAKVLNEATGYIRSLLGKRIRARIMPELKFVVDNSLMEGMRISNLV 111
Query: 187 DRIKAEKEA 195
D I E A
Sbjct: 112 DSIIREDNA 120
>gi|227872006|ref|ZP_03990391.1| ribosome-binding factor A [Oribacterium sinus F0268]
gi|227842149|gb|EEJ52394.1| ribosome-binding factor A [Oribacterium sinus F0268]
Length = 138
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLR 163
D +S ++ V+++ DLQ KV+VS G + I GLK+ ++R +L + LR
Sbjct: 29 DSRVSPFCDVTGVDLTPDLQYCKVFVSCLGSEEELGKTIEGLKAAGGFLRRELAGSLNLR 88
Query: 164 LTPEIRFIEDESFERGSRVIAILDRI-KAEKEAA 196
TPE++FI D S E GSR+ A++ ++ K +KE A
Sbjct: 89 HTPELQFIADHSVEYGSRMDALISQVSKEDKERA 122
>gi|117919480|ref|YP_868672.1| ribosome-binding factor A [Shewanella sp. ANA-3]
gi|166219406|sp|A0KTZ7.1|RBFA_SHESA RecName: Full=Ribosome-binding factor A
gi|117611812|gb|ABK47266.1| ribosome-binding factor A [Shewanella sp. ANA-3]
Length = 146
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 84/155 (54%), Gaps = 22/155 (14%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + +A+Q+Q+EL+ +L D + + +G T++DV+VS DL KV+
Sbjct: 7 RTRRIAQQLQQELAVVLQRD-------MKDPRIG-------FVTVNDVDVSRDLSYAKVF 52
Query: 129 VSVFGDDRGKEVA---IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
V+ F +D KE+ + L + A Y+R+ + RMKLR+ PEIRF+ D S G R+ +
Sbjct: 53 VTFFEED--KELVQEKLNALITAAPYIRTLVAGRMKLRVMPEIRFVYDSSLVEGMRMSNL 110
Query: 186 LDRIKAEKEAAKSK--NKEQFESPDLPEDERDWEG 218
+ ++ +A + + + E S D+ E + D EG
Sbjct: 111 VSQVINSDKAKQQQFGSAEDVTSNDIDEAD-DTEG 144
>gi|315126159|ref|YP_004068162.1| ribosome-binding factor A, role in processing of 16S rRNA
[Pseudoalteromonas sp. SM9913]
gi|359446459|ref|ZP_09236132.1| ribosome-binding factor A [Pseudoalteromonas sp. BSi20439]
gi|392556465|ref|ZP_10303602.1| ribosome-binding factor A, role in processing of 16S rRNA
[Pseudoalteromonas undina NCIMB 2128]
gi|315014673|gb|ADT68011.1| ribosome-binding factor A, role in processing of 16S rRNA
[Pseudoalteromonas sp. SM9913]
gi|358039716|dbj|GAA72381.1| ribosome-binding factor A [Pseudoalteromonas sp. BSi20439]
Length = 135
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 69/129 (53%), Gaps = 16/129 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R VA+QIQ+E++ +L + + + LG + T+S VEVS DL KV+
Sbjct: 6 RTDRVAQQIQKEIAVILQRE-------IKDPRLG-------MVTVSAVEVSRDLSYAKVF 51
Query: 129 VSVFG--DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++VF D+ + + L Y+RS LG+R++ R+ PE++F+ D S G R+ ++
Sbjct: 52 ITVFNTEDENAAKQSAKVLNEATGYIRSLLGKRIRARIMPELKFVVDNSLMEGMRISNLV 111
Query: 187 DRIKAEKEA 195
D I E A
Sbjct: 112 DSIIREDNA 120
>gi|134095609|ref|YP_001100684.1| ribosome-binding factor A [Herminiimonas arsenicoxydans]
gi|172044150|sp|A4G7S6.1|RBFA_HERAR RecName: Full=Ribosome-binding factor A
gi|133739512|emb|CAL62563.1| ribosome-binding factor A [Herminiimonas arsenicoxydans]
Length = 128
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 75/137 (54%), Gaps = 19/137 (13%)
Query: 67 PRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVK 126
P R VA QIQR+LS+++ + L + +G + TI++V+V+ D K
Sbjct: 9 PGRGLRVADQIQRDLSEIVAFE-------LKDPRVG-------MITITEVQVTPDYAHAK 54
Query: 127 VYVSVFGDDRGK-EVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
V+ ++ D++ + + ++GL + + Y+R QLGRR+ + PE+ F+ D S RG + +
Sbjct: 55 VFFTMLSDNKDEIKNTVSGLSAASGYIRGQLGRRLSIHTLPELHFVHDTSTARGIEMSKL 114
Query: 186 LDRIKAEKEAAKSKNKE 202
+D E A ++K+ E
Sbjct: 115 ID----EANATRAKDAE 127
>gi|54307816|ref|YP_128836.1| ribosome-binding factor A [Photobacterium profundum SS9]
gi|46912239|emb|CAG19034.1| putative ribosome-binding factor A [Photobacterium profundum SS9]
Length = 101
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 51/75 (68%), Gaps = 3/75 (4%)
Query: 110 LTTISDVEVSADLQVVKVYVSVF--GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPE 167
+TTIS VEVS D+ KV+V+ F G+ K ++A L+ A Y+RS LG++++LR+TPE
Sbjct: 1 MTTISSVEVSRDMCYAKVFVTFFTIGEQTAKG-SLAVLREMAPYIRSLLGKQIRLRVTPE 59
Query: 168 IRFIEDESFERGSRV 182
+ FI DES G R+
Sbjct: 60 LTFIFDESLTEGMRI 74
>gi|357008000|ref|ZP_09072999.1| RbfA [Paenibacillus elgii B69]
Length = 118
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 67/121 (55%), Gaps = 14/121 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
RV V +QI++ELS ++ ++ L + +G T++ V+V+ D KVY
Sbjct: 5 RVGRVGEQIKKELSQIIQSE-------LKDPRIG-------FITVTGVDVTNDFSQAKVY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+SV G D KE + L ++RS+LG+R+++R PE+ F D S + GS++ ++ +
Sbjct: 51 LSVLGSDEQKEETLKALARGTGFIRSELGKRIRMRKIPELLFKFDASIDYGSKIETLIHQ 110
Query: 189 I 189
I
Sbjct: 111 I 111
>gi|89095213|ref|ZP_01168136.1| Ribosome-binding factor A [Neptuniibacter caesariensis]
gi|89080510|gb|EAR59759.1| Ribosome-binding factor A [Oceanospirillum sp. MED92]
Length = 135
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 77/138 (55%), Gaps = 20/138 (14%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + +A Q+QREL+ +++QF + + LG + T+S V+VS DL VY
Sbjct: 7 RTERIADQLQRELA------QLIQFEI-KDPRLG-------MVTVSYVKVSKDLGFADVY 52
Query: 129 VSVF---GDDRGKEV--AIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
++V G D + + ++ L S A ++R +L R +KLR+ P++RF DE+ ERG +
Sbjct: 53 ITVLPLNGKDEAEAIVDSLKVLNSAAGFLRGELARNIKLRIMPQLRFHFDETIERGRHLH 112
Query: 184 AILD-RIKAEKEAAKSKN 200
+++ I+ E + A KN
Sbjct: 113 HLIEATIRQENQNATDKN 130
>gi|32033693|ref|ZP_00133988.1| COG0858: Ribosome-binding factor A [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|126208122|ref|YP_001053347.1| ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
5b str. L20]
gi|165976052|ref|YP_001651645.1| ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
3 str. JL03]
gi|190149950|ref|YP_001968475.1| ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
7 str. AP76]
gi|303249645|ref|ZP_07335850.1| ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|303253710|ref|ZP_07339847.1| ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
2 str. 4226]
gi|307245496|ref|ZP_07527583.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
1 str. 4074]
gi|307247610|ref|ZP_07529653.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
2 str. S1536]
gi|307249839|ref|ZP_07531815.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
4 str. M62]
gi|307252191|ref|ZP_07534089.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|307254450|ref|ZP_07536287.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
9 str. CVJ13261]
gi|307256662|ref|ZP_07538441.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
10 str. D13039]
gi|307258909|ref|ZP_07540640.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
11 str. 56153]
gi|307261097|ref|ZP_07542776.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
12 str. 1096]
gi|307263278|ref|ZP_07544896.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
13 str. N273]
gi|166218414|sp|A3N006.1|RBFA_ACTP2 RecName: Full=Ribosome-binding factor A
gi|238687490|sp|B0BNR6.1|RBFA_ACTPJ RecName: Full=Ribosome-binding factor A
gi|238692383|sp|B3H164.1|RBFA_ACTP7 RecName: Full=Ribosome-binding factor A
gi|126096914|gb|ABN73742.1| ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
5b str. L20]
gi|165876153|gb|ABY69201.1| ribosome binding factor A [Actinobacillus pleuropneumoniae serovar
3 str. JL03]
gi|189915081|gb|ACE61333.1| ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
7 str. AP76]
gi|302647435|gb|EFL77654.1| ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
2 str. 4226]
gi|302651457|gb|EFL81608.1| ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|306853555|gb|EFM85773.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
1 str. 4074]
gi|306855880|gb|EFM88040.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
2 str. S1536]
gi|306858141|gb|EFM90221.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
4 str. M62]
gi|306860335|gb|EFM92350.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|306862591|gb|EFM94548.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
9 str. CVJ13261]
gi|306864710|gb|EFM96614.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
10 str. D13039]
gi|306866933|gb|EFM98790.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
11 str. 56153]
gi|306869229|gb|EFN01027.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
12 str. 1096]
gi|306871340|gb|EFN03066.1| Ribosome-binding factor A [Actinobacillus pleuropneumoniae serovar
13 str. N273]
Length = 127
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 61/97 (62%), Gaps = 5/97 (5%)
Query: 109 SLTTISDVEVSADLQVVKVYVS-VFGDDRGK-EVAIAGLKSKAKYVRSQLGRRMKLRLTP 166
+ T+SDVEVS DL K++V+ +F +D+ E + GL+ + Y+RS +G+ M+LR+ P
Sbjct: 33 GMVTVSDVEVSRDLAYAKIFVTFLFDNDQSVIEQGMKGLEKASPYIRSLVGKAMRLRIVP 92
Query: 167 EIRFIEDESFERGSRVIAILDRIKAEKEAAKSKNKEQ 203
E+RFI D+S G R+ ++ + EA K+KE+
Sbjct: 93 ELRFIYDQSLVEGMRMSNLVSNVIKNDEA---KHKEE 126
>gi|429205442|ref|ZP_19196719.1| ribosome-binding factor A [Lactobacillus saerimneri 30a]
gi|428146514|gb|EKW98753.1| ribosome-binding factor A [Lactobacillus saerimneri 30a]
Length = 119
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 66/128 (51%), Gaps = 15/128 (11%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
M RV +AK+I+RE+SD+LL +V V TI+ V+VS DLQ
Sbjct: 1 MVKEHRVGRLAKEIEREVSDILLK-RVRDPRVQD-------------ITITGVDVSGDLQ 46
Query: 124 VVKVYVSVFGDDRGK-EVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
+Y S+ D + A GL +R +LGRR+ + +TPEI+F DES G R+
Sbjct: 47 HATIYYSILSDKASDAQKAQQGLDKATGLIRGELGRRLTIYVTPEIKFERDESVRYGDRI 106
Query: 183 IAILDRIK 190
+L+ +K
Sbjct: 107 DQLLNDLK 114
>gi|261856062|ref|YP_003263345.1| ribosome-binding factor A [Halothiobacillus neapolitanus c2]
gi|261836531|gb|ACX96298.1| ribosome-binding factor A [Halothiobacillus neapolitanus c2]
Length = 139
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 71/126 (56%), Gaps = 15/126 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + VA+QI+RE++D LL +++ Q + SL T++D EV+ DL K++
Sbjct: 7 RHQRVAEQIRREIAD-LLREEIRQAGI-------------SLLTVTDCEVTRDLGYAKIF 52
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
SV +E A A L S A ++R++L RM+LR P + F D S ERG ++ A++
Sbjct: 53 YSVLNSSE-RERAQAWLDSAAGFLRTELAHRMRLRSVPRLTFQFDASIERGMQMDALISA 111
Query: 189 IKAEKE 194
++ + +
Sbjct: 112 VRKQDD 117
>gi|126175438|ref|YP_001051587.1| ribosome-binding factor A [Shewanella baltica OS155]
gi|153001788|ref|YP_001367469.1| ribosome-binding factor A [Shewanella baltica OS185]
gi|217972316|ref|YP_002357067.1| ribosome-binding factor A [Shewanella baltica OS223]
gi|125998643|gb|ABN62718.1| ribosome-binding factor A [Shewanella baltica OS155]
gi|151366406|gb|ABS09406.1| ribosome-binding factor A [Shewanella baltica OS185]
gi|217497451|gb|ACK45644.1| ribosome-binding factor A [Shewanella baltica OS223]
Length = 157
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 67/119 (56%), Gaps = 8/119 (6%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGK-EVAIAGLKSKAKYVRSQLGRRMKLRLTPE 167
T++DV+VS DL KV+V+ F +D+ + + L S A Y+R+ + RMKLR+ PE
Sbjct: 38 GFVTVNDVDVSRDLSYAKVFVTFFEEDKAVVQEKLNALISAAPYIRTLVAGRMKLRVMPE 97
Query: 168 IRFIEDESFERGSRVIAILDRIKAEKEAAKSKNKEQFESPDLP-EDE--RDWEGDDPDE 223
+RFI D S G R+ ++ ++ + +A ++QF S D EDE D DD DE
Sbjct: 98 LRFIYDSSLVEGMRMSNLVSQVINQDKA----KQQQFGSEDASVEDEVLGDDVADDADE 152
>gi|343521288|ref|ZP_08758256.1| ribosome-binding factor A [Parvimonas sp. oral taxon 393 str.
F0440]
gi|343396494|gb|EGV09031.1| ribosome-binding factor A [Parvimonas sp. oral taxon 393 str.
F0440]
Length = 132
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 67/127 (52%), Gaps = 12/127 (9%)
Query: 66 NPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
N +R+ + +I R LSD + + +R S+T I+ V V+ DL +
Sbjct: 2 NEKRLGRIESEINRVLSDAIYN------------GIKDNRINPSITNITKVSVTNDLGIC 49
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
V + +FGD++ KE + GL+S Y++ ++ + LR TP++ F DESFE+ + + +
Sbjct: 50 YVNIGIFGDEKTKEKTMKGLESATGYMKKKISESLDLRHTPKLIFKLDESFEKAALMNEL 109
Query: 186 LDRIKAE 192
+ ++ E
Sbjct: 110 IIKVSKE 116
>gi|149189793|ref|ZP_01868074.1| ribosome-binding factor A [Vibrio shilonii AK1]
gi|148836442|gb|EDL53398.1| ribosome-binding factor A [Vibrio shilonii AK1]
Length = 138
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 77/137 (56%), Gaps = 20/137 (14%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + VA+Q+Q+EL+ +L + + ++ LG + TISDVEVS DL KV+
Sbjct: 7 RTQRVAQQLQKELALILQRE-------VRDSRLG-------MVTISDVEVSRDLAYAKVF 52
Query: 129 VSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
V+ ++ E ++A L+ ++R LG+R++LRLTPE+RF D + G R+ ++
Sbjct: 53 VTFLCVGEQTPESSLAALREHEAHIRMMLGKRIRLRLTPEVRFHYDNTLVEGMRMSNLVS 112
Query: 188 RI-----KAEKEAAKSK 199
+ + + EA +S+
Sbjct: 113 EVVNEDKRKQDEAGRSE 129
>gi|289449941|ref|YP_003474588.1| ribosome-binding factor A [Clostridiales genomosp. BVAB3 str.
UPII9-5]
gi|289184488|gb|ADC90913.1| ribosome-binding factor A [Clostridiales genomosp. BVAB3 str.
UPII9-5]
Length = 137
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 74/146 (50%), Gaps = 22/146 (15%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + V QI+RELS K+LQ + D+ + T ++ V+V+ DL Y
Sbjct: 5 RAERVGDQIKRELS------KILQRGL-------KDQRVLPFTAVTAVDVTNDLSHATCY 51
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD- 187
+SV GD ++ + GL+S + Y+R Q+ ++LR+ PE+ F D S + G R+ ++D
Sbjct: 52 ISVLGDALAQKNCLLGLQSASGYLRRQIAGLIRLRIVPELHFKPDNSVQEGLRMDKLIDA 111
Query: 188 --------RIKAEKEAAKSKNKEQFE 205
R +A A K + +EQ E
Sbjct: 112 TLAADAKVRAQAATVADKDEEREQDE 137
>gi|444349032|ref|ZP_21156564.1| ribosome-binding factor A [Aggregatibacter actinomycetemcomitans
serotype b str. S23A]
gi|443545610|gb|ELT55384.1| ribosome-binding factor A [Aggregatibacter actinomycetemcomitans
serotype b str. S23A]
Length = 133
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 58/99 (58%), Gaps = 4/99 (4%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTP 166
+ T+SDV+VS+DL KV+V+ D + +A + GL+ A Y+R+ LG+ M+LR+ P
Sbjct: 33 GMVTVSDVDVSSDLAYAKVFVTFLFDHDEQAIAQGMKGLEKAAPYIRTLLGKAMRLRIVP 92
Query: 167 EIRFIEDESFERGSRVIAILDRIKAE--KEAAKSKNKEQ 203
EIRFI D+ G R+ ++ + E K ++ N Q
Sbjct: 93 EIRFIYDQYLVEGMRMSNLVTNVVREDQKNTMRTMNNVQ 131
>gi|27365058|ref|NP_760586.1| ribosome-binding factor A [Vibrio vulnificus CMCP6]
gi|161486605|ref|NP_935500.2| ribosome-binding factor A [Vibrio vulnificus YJ016]
gi|320155442|ref|YP_004187821.1| ribosome-binding factor A [Vibrio vulnificus MO6-24/O]
gi|29427705|sp|Q8DBV9.1|RBFA_VIBVU RecName: Full=Ribosome-binding factor A
gi|39931703|sp|Q7MI10.1|RBFA_VIBVY RecName: Full=Ribosome-binding factor A
gi|27361204|gb|AAO10113.1| ribosome-binding factor A [Vibrio vulnificus CMCP6]
gi|319930754|gb|ADV85618.1| ribosome-binding factor A [Vibrio vulnificus MO6-24/O]
Length = 131
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 80/139 (57%), Gaps = 19/139 (13%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + V++Q+Q+EL+ M+L +V ++ LG + TISDVEVS DL KV+
Sbjct: 7 RTQRVSQQLQKELA-MILQREV------RDSRLG-------MVTISDVEVSRDLAYAKVF 52
Query: 129 VSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSR----VI 183
V+ ++ E +A L+ ++R LG+R++LRLTPE+RF D + G R V
Sbjct: 53 VTFLCVGEQTPESCLAALREHEVHIRMMLGKRIRLRLTPEVRFYYDNTLVEGMRMSNLVT 112
Query: 184 AILDRIKAEKEAAKSKNKE 202
++++ K +++ A +++E
Sbjct: 113 EVVNKDKIKQKDAGREDEE 131
>gi|313892629|ref|ZP_07826216.1| ribosome-binding factor A [Dialister microaerophilus UPII 345-E]
gi|329121251|ref|ZP_08249878.1| ribosome-binding factor A [Dialister micraerophilus DSM 19965]
gi|313119026|gb|EFR42231.1| ribosome-binding factor A [Dialister microaerophilus UPII 345-E]
gi|327470185|gb|EGF15648.1| ribosome-binding factor A [Dialister micraerophilus DSM 19965]
Length = 117
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 70/121 (57%), Gaps = 14/121 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
RV+ + + I++E+ +LL + + LG TT++DV+V+ DL+ VY
Sbjct: 5 RVRKIQEFIKQEVGKLLLNG-------IKDPRLG-------FTTVTDVKVTGDLREATVY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VS+FG ++ K+ ++ L ++R ++G+ + + +PEI F ED+S E G ++ +L++
Sbjct: 51 VSLFGSEKEKKDSLNVLNKAKGFIRKEVGKSLNIFYSPEISFEEDKSLEYGMKIEKLLNK 110
Query: 189 I 189
I
Sbjct: 111 I 111
>gi|117620712|ref|YP_857793.1| ribosome-binding factor A [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
gi|166218415|sp|A0KNE2.1|RBFA_AERHH RecName: Full=Ribosome-binding factor A
gi|117562119|gb|ABK39067.1| ribosome-binding factor A [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
Length = 144
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 78/145 (53%), Gaps = 19/145 (13%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + V +QIQRE++ +LQ V + +G + T+SDVEVS DL KVY
Sbjct: 7 RTRRVGQQIQREIA------LILQREV-KDPRIG-------MVTVSDVEVSRDLNYAKVY 52
Query: 129 VSVFGDDRGKEVAIAGLKS---KAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
V+ + E GLK+ A Y+RS LG M+LR+ PE+RF D++ G R+ +
Sbjct: 53 VTFLQLENDAERIKEGLKALTEAAGYIRSLLGSAMRLRVVPELRFFYDQTLVEGMRLSNL 112
Query: 186 L-DRIKAEK-EAAKSKNKEQFESPD 208
+ + I+ +K A+S +E +PD
Sbjct: 113 VTNTIREDKRRMAESGREEDDAAPD 137
>gi|260771172|ref|ZP_05880099.1| ribosome-binding factor A [Vibrio furnissii CIP 102972]
gi|375130049|ref|YP_004992148.1| ribosome-binding factor A [Vibrio furnissii NCTC 11218]
gi|260613769|gb|EEX38961.1| ribosome-binding factor A [Vibrio furnissii CIP 102972]
gi|315179222|gb|ADT86136.1| ribosome-binding factor A [Vibrio furnissii NCTC 11218]
Length = 131
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 75/135 (55%), Gaps = 18/135 (13%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + VA+Q+Q+EL+ M+L +V ++ LG + TISDVEVS DL KV+
Sbjct: 7 RTQRVAQQLQKELA-MILQREV------RDSRLG-------MVTISDVEVSRDLAYAKVF 52
Query: 129 VSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
V+ ++ E + L+ ++R LG+R++LRLTPEIRF D + G R+ ++
Sbjct: 53 VTFLCVGEQTPESCLNALREHEVHIRMMLGKRIRLRLTPEIRFHYDNTLVEGMRMSNLVT 112
Query: 188 RIKAEKEAAKSKNKE 202
+ ++ K K KE
Sbjct: 113 EVVSQD---KQKQKE 124
>gi|359431819|ref|ZP_09222230.1| ribosome-binding factor A [Pseudoalteromonas sp. BSi20652]
gi|357921521|dbj|GAA58479.1| ribosome-binding factor A [Pseudoalteromonas sp. BSi20652]
Length = 161
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 83/159 (52%), Gaps = 20/159 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R VA+QIQ+E++ +L + + + LG + T+S VEVS DL K++
Sbjct: 6 RTDRVAQQIQKEIAVILQRE-------IKDPRLG-------MVTVSAVEVSRDLSYAKIF 51
Query: 129 VSVFG---DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
++VF +D K+ A L Y+RS LG+R++ R+ PE++F+ D S G R+ +
Sbjct: 52 ITVFNTQDEDAAKQSAKV-LNEATGYIRSLLGKRIRARIMPELKFVVDNSLMEGMRISNL 110
Query: 186 LDRIKAEKEAAK-SKNKEQFESPDLPEDERDWEG-DDPD 222
+D I E A ++ E ++ D+ + E + DD D
Sbjct: 111 VDSIIREDNAKHVDEDVESVDAADISDSEEGTDNVDDTD 149
>gi|423100407|ref|ZP_17088114.1| ribosome-binding factor A [Listeria innocua ATCC 33091]
gi|370793408|gb|EHN61246.1| ribosome-binding factor A [Listeria innocua ATCC 33091]
Length = 103
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 49/78 (62%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEI 168
T++ V+V+ DLQ KV++S+ G D+ KE + L+ ++RS++GRR++LR PE+
Sbjct: 19 GFVTVTGVDVTGDLQEAKVFISILGTDKEKENTLLALEKAHGFIRSEIGRRIRLRKVPEM 78
Query: 169 RFIEDESFERGSRVIAIL 186
F D S G+R+ +L
Sbjct: 79 SFEIDNSIAYGNRIDELL 96
>gi|261253849|ref|ZP_05946422.1| ribosome-binding factor A [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|417953524|ref|ZP_12596569.1| ribosome-binding factor A [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|260937240|gb|EEX93229.1| ribosome-binding factor A [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|342817125|gb|EGU52012.1| ribosome-binding factor A [Vibrio orientalis CIP 102891 = ATCC
33934]
Length = 135
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 71/125 (56%), Gaps = 15/125 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + VA+Q+Q+EL+ M+L +V ++ LG + TISDVEVS DL KV+
Sbjct: 7 RTQRVAQQLQKELA-MILQREV------RDSRLG-------MVTISDVEVSRDLAYAKVF 52
Query: 129 VSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
V+ ++ E + L+ ++R LG+R++LRLTPE+RF D + G R+ ++
Sbjct: 53 VTFLCIGEQTPESCLEALREHEVHIRMMLGKRIRLRLTPEVRFYYDNTLVEGMRMSNLVS 112
Query: 188 RIKAE 192
+ +E
Sbjct: 113 EVVSE 117
>gi|325276166|ref|ZP_08141971.1| ribosome-binding factor A [Pseudomonas sp. TJI-51]
gi|324098703|gb|EGB96744.1| ribosome-binding factor A [Pseudomonas sp. TJI-51]
Length = 132
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 76/140 (54%), Gaps = 20/140 (14%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL++++ + + + +G L TI+ V+VS DL KV+
Sbjct: 7 RTQRIGDQMQRELAELIRRE-------VKDPRVG-------LVTITAVDVSRDLGHAKVF 52
Query: 129 VSVFGDDRGKEV--AIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G++ V ++ L S A ++R LGR M+LR P++ F DES RG + A++
Sbjct: 53 ITVMGEETPDAVQQSLKALNSAASFLRLHLGRSMQLRSVPQLHFHFDESVSRGVHLSALI 112
Query: 187 DRIKAE----KEAAKSKNKE 202
+R AE KEA + KE
Sbjct: 113 ERAVAEDRMHKEADEPDTKE 132
>gi|377577023|ref|ZP_09806006.1| ribosome-binding factor A [Escherichia hermannii NBRC 105704]
gi|377541551|dbj|GAB51171.1| ribosome-binding factor A [Escherichia hermannii NBRC 105704]
Length = 133
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 74/130 (56%), Gaps = 17/130 (13%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + VA+++Q+E++ +LQ + D L +TT+SDVEVS DL KV+
Sbjct: 7 RAQRVAQEMQKEIA------IILQREI-------KDPRLGLMTTVSDVEVSRDLAYAKVF 53
Query: 129 VSVFGDDRGKEVAIAGLKS---KAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
V+ F +D+ +E AG+K+ + ++R+ LG+ M+LR+ PE+ F D S G R+ +
Sbjct: 54 VT-FLNDKDEEAIKAGIKALQDASGFIRTLLGKAMRLRIVPELTFFYDNSLVEGMRMSNL 112
Query: 186 LDRIKAEKEA 195
+ + + EA
Sbjct: 113 VSNVIKDDEA 122
>gi|416054320|ref|ZP_11579144.1| ribosome-binding factor A [Aggregatibacter actinomycetemcomitans
serotype e str. SCC393]
gi|348003577|gb|EGY44156.1| ribosome-binding factor A [Aggregatibacter actinomycetemcomitans
serotype e str. SCC393]
Length = 92
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
Query: 113 ISDVEVSADLQVVKVYVSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTPEIRF 170
+SDV+VS+DL KV+V+ D + +A + GL+ A Y+R+ LG+ M+LR+ PEIRF
Sbjct: 1 MSDVDVSSDLAYAKVFVTFLFDHDEQAIAQGMKGLEKAAPYIRTLLGKAMRLRIVPEIRF 60
Query: 171 IEDESFERGSRVIAILDRIKAEKEAAKSKNKE 202
I D+S G R+ ++ + E + ++ E
Sbjct: 61 IYDQSLVEGMRMSNLVTNVVREDQKKHHEDNE 92
>gi|21231943|ref|NP_637860.1| ribosome-binding factor A [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66767930|ref|YP_242692.1| ribosome-binding factor A [Xanthomonas campestris pv. campestris
str. 8004]
gi|188991046|ref|YP_001903056.1| ribosome-binding factor A [Xanthomonas campestris pv. campestris
str. B100]
gi|384428465|ref|YP_005637825.1| ribosome-binding factor A [Xanthomonas campestris pv. raphani 756C]
gi|21113672|gb|AAM41784.1| ribosomal-binding factor A [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66573262|gb|AAY48672.1| ribosomal-binding factor A [Xanthomonas campestris pv. campestris
str. 8004]
gi|167732806|emb|CAP51000.1| ribosomal-binding factor A [Xanthomonas campestris pv. campestris]
gi|341937568|gb|AEL07707.1| ribosome-binding factor A [Xanthomonas campestris pv. raphani 756C]
Length = 132
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 112 TISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFI 171
++SDVE+S DL KV+V+ +R E A+ GLK A +R+QL R MKLR PE+ F
Sbjct: 39 SVSDVEISRDLAHAKVFVTALQQERSAE-AVKGLKEIAGQLRTQLARAMKLRHVPELHFH 97
Query: 172 EDESFERGSRVIAIL 186
D+S +RG R+ +L
Sbjct: 98 YDDSVDRGERIDNLL 112
>gi|24418643|sp|Q8P7U8.1|RBFA_XANCP RecName: Full=Ribosome-binding factor A
gi|172046801|sp|Q4UWA1.2|RBFA_XANC8 RecName: Full=Ribosome-binding factor A
gi|189039669|sp|B0RRB5.2|RBFA_XANCB RecName: Full=Ribosome-binding factor A
Length = 130
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 111 TTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRF 170
++SDVE+S DL KV+V+ +R E A+ GLK A +R+QL R MKLR PE+ F
Sbjct: 36 VSVSDVEISRDLAHAKVFVTALQQERSAE-AVKGLKEIAGQLRTQLARAMKLRHVPELHF 94
Query: 171 IEDESFERGSRVIAIL 186
D+S +RG R+ +L
Sbjct: 95 HYDDSVDRGERIDNLL 110
>gi|42523055|ref|NP_968435.1| hypothetical protein Bd1548 [Bdellovibrio bacteriovorus HD100]
gi|61215037|sp|Q6MMS5.1|RBFA_BDEBA RecName: Full=Ribosome-binding factor A
gi|39575260|emb|CAE79428.1| unnamed protein product [Bdellovibrio bacteriovorus HD100]
Length = 134
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 75/135 (55%), Gaps = 14/135 (10%)
Query: 61 VKCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSA 120
+K M + RR+ V ++IQ ++ L+ G L L T++ V++ A
Sbjct: 1 MKNMGDGRRIARVEREIQATIAQFLIR--------------GFKTPLPGLVTVASVKMPA 46
Query: 121 DLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGS 180
DL+ KVYVS+ GD++ ++ A+ L+ +A +++ +G+ +K+R P++ F D + E+
Sbjct: 47 DLRAAKVYVSILGDEKQQDEALDLLQERAFEIQNYIGKELKMRYCPKLTFYLDHATEQVL 106
Query: 181 RVIAILDRIKAEKEA 195
+V IL ++ E++A
Sbjct: 107 KVEKILHELELERKA 121
>gi|284044676|ref|YP_003395016.1| ribosome-binding factor A [Conexibacter woesei DSM 14684]
gi|283948897|gb|ADB51641.1| ribosome-binding factor A [Conexibacter woesei DSM 14684]
Length = 121
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 49/78 (62%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEI 168
T++ V S+DL+ +VYVSV GD+ + +AGL+S Y++ + R ++++ TPEI
Sbjct: 26 GFVTVTAVRTSSDLRHARVYVSVLGDEETRAECLAGLRSATGYLQRLVAREVRMKYTPEI 85
Query: 169 RFIEDESFERGSRVIAIL 186
F D+S +RG R+ IL
Sbjct: 86 VFAYDDSIDRGMRITEIL 103
>gi|386342181|ref|YP_006038547.1| Ribosome-binding factor A [Shewanella baltica OS117]
gi|172044106|sp|A3D7K5.2|RBFA_SHEB5 RecName: Full=Ribosome-binding factor A
gi|172044119|sp|A6WRG7.2|RBFA_SHEB8 RecName: Full=Ribosome-binding factor A
gi|334864582|gb|AEH15053.1| Ribosome-binding factor A [Shewanella baltica OS117]
Length = 152
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 67/119 (56%), Gaps = 8/119 (6%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGK-EVAIAGLKSKAKYVRSQLGRRMKLRLTPE 167
T++DV+VS DL KV+V+ F +D+ + + L S A Y+R+ + RMKLR+ PE
Sbjct: 33 GFVTVNDVDVSRDLSYAKVFVTFFEEDKAVVQEKLNALISAAPYIRTLVAGRMKLRVMPE 92
Query: 168 IRFIEDESFERGSRVIAILDRIKAEKEAAKSKNKEQFESPDLP-EDE--RDWEGDDPDE 223
+RFI D S G R+ ++ ++ + +A ++QF S D EDE D DD DE
Sbjct: 93 LRFIYDSSLVEGMRMSNLVSQVINQDKA----KQQQFGSEDASVEDEVLGDDVADDADE 147
>gi|15895079|ref|NP_348428.1| ribosome-binding factor A [Clostridium acetobutylicum ATCC 824]
gi|337737020|ref|YP_004636467.1| ribosome-binding factor A [Clostridium acetobutylicum DSM 1731]
gi|384458528|ref|YP_005670948.1| ribosome-binding factor A [Clostridium acetobutylicum EA 2018]
gi|20978633|sp|Q97I50.1|RBFA_CLOAB RecName: Full=Ribosome-binding factor A
gi|15024776|gb|AAK79768.1|AE007689_6 Ribosome-binding factor A [Clostridium acetobutylicum ATCC 824]
gi|325509217|gb|ADZ20853.1| ribosome-binding factor A [Clostridium acetobutylicum EA 2018]
gi|336292981|gb|AEI34115.1| ribosome-binding factor A [Clostridium acetobutylicum DSM 1731]
Length = 121
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 53/85 (62%)
Query: 107 LSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTP 166
L+S+ ++ V+V+ DL+ K YVS+ GD+ K+ + LK ++R +LG +KLR TP
Sbjct: 30 LTSMISVIKVDVTKDLRYAKAYVSILGDEAKKKETMDILKKSESFIRKELGYAVKLRYTP 89
Query: 167 EIRFIEDESFERGSRVIAILDRIKA 191
E+ D S E+G + AIL++IK
Sbjct: 90 EVIIELDTSIEKGMHIDAILEKIKG 114
>gi|330830887|ref|YP_004393839.1| ribosome-binding factor A [Aeromonas veronii B565]
gi|406675895|ref|ZP_11083081.1| ribosome-binding factor A [Aeromonas veronii AMC35]
gi|423202716|ref|ZP_17189295.1| ribosome-binding factor A [Aeromonas veronii AER39]
gi|423205506|ref|ZP_17192062.1| ribosome-binding factor A [Aeromonas veronii AMC34]
gi|423208468|ref|ZP_17195022.1| ribosome-binding factor A [Aeromonas veronii AER397]
gi|328806023|gb|AEB51222.1| Ribosome-binding factor A [Aeromonas veronii B565]
gi|404614912|gb|EKB11891.1| ribosome-binding factor A [Aeromonas veronii AER39]
gi|404618313|gb|EKB15233.1| ribosome-binding factor A [Aeromonas veronii AER397]
gi|404624047|gb|EKB20892.1| ribosome-binding factor A [Aeromonas veronii AMC34]
gi|404626118|gb|EKB22928.1| ribosome-binding factor A [Aeromonas veronii AMC35]
Length = 145
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 77/147 (52%), Gaps = 22/147 (14%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + V +QIQRE++ +LQ V + +G + T+SDVEVS DL K+Y
Sbjct: 7 RTRRVGQQIQREIA------LILQREV-KDPRIG-------MVTVSDVEVSRDLNYAKIY 52
Query: 129 VSVF----GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIA 184
V+ +R KE + GL A Y+RS LG M+LR+ PE+RF D++ G R+
Sbjct: 53 VTFLQLENDAERIKE-GLQGLTEAAGYIRSLLGSAMRLRVVPELRFYYDQTLVEGMRLSN 111
Query: 185 ILDRIKAE--KEAAKSKNKEQFES-PD 208
++ E + A+S E+ ES PD
Sbjct: 112 LVTNTVREDKRRMAESGRDEEAESAPD 138
>gi|429334715|ref|ZP_19215368.1| ribosome-binding factor A [Pseudomonas putida CSV86]
gi|428760607|gb|EKX82868.1| ribosome-binding factor A [Pseudomonas putida CSV86]
Length = 133
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 70/126 (55%), Gaps = 16/126 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + +G L TI+ V+VS D+ KV+
Sbjct: 7 RTQRIGDQMQRELAQLIRRE-------VKDPRVG-------LVTITAVDVSRDVGHAKVF 52
Query: 129 VSVFGD--DRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G D + ++ L S A ++R QLGR MKLR P++ F DES RG+ + A++
Sbjct: 53 ITVMGQEGDDAIQQSLKVLNSAAGFLRMQLGREMKLRSVPQLHFHYDESVSRGAHLSALI 112
Query: 187 DRIKAE 192
+R AE
Sbjct: 113 ERAVAE 118
>gi|411008258|ref|ZP_11384587.1| ribosome-binding factor A [Aeromonas aquariorum AAK1]
gi|423195553|ref|ZP_17182136.1| ribosome-binding factor A [Aeromonas hydrophila SSU]
gi|404633328|gb|EKB29877.1| ribosome-binding factor A [Aeromonas hydrophila SSU]
Length = 144
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 78/145 (53%), Gaps = 19/145 (13%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + V +QIQRE++ +LQ V + +G + T+SDVEVS DL KVY
Sbjct: 7 RTRRVGQQIQREIA------LILQREV-KDPRIG-------MVTVSDVEVSRDLNYAKVY 52
Query: 129 VSVFGDDRGKEVAIAGLKS---KAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
V+ + E GLK+ A Y+RS LG M+LR+ PE+RF D++ G R+ +
Sbjct: 53 VTFLQLENDAERIKEGLKALTEAAGYIRSLLGSAMRLRVVPELRFFYDQTLVEGMRLSNL 112
Query: 186 L-DRIKAEK-EAAKSKNKEQFESPD 208
+ + I+ +K A+S +E +PD
Sbjct: 113 VTNTIREDKRRMAESGREEDEAAPD 137
>gi|383936864|ref|ZP_09990283.1| ribosome-binding factor A [Rheinheimera nanhaiensis E407-8]
gi|383702101|dbj|GAB60374.1| ribosome-binding factor A [Rheinheimera nanhaiensis E407-8]
Length = 146
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFG--DDRGKEVAIAGLKSKAKYVRSQLGRRMK 161
D L S+ T+SDVEVS DL KV+V+ G DD+ E + L + +VRS +G+R++
Sbjct: 28 DPRLHSMITVSDVEVSRDLSHAKVFVTFLGLADDK-VEDNLKILNDASGFVRSLIGKRIQ 86
Query: 162 LRLTPEIRFIEDESFERGSRVIAILDRIKAEKEAAKSKNKEQFESPDLPEDERDWEGD-D 220
R+ P IRF+ DES G R+ ++ +AE + + + +S +D D G+ D
Sbjct: 87 ARIVPHIRFVFDESLNEGIRMANLVSNARAEDD------RRRLQSGQALDDGADAAGNAD 140
Query: 221 PDE 223
DE
Sbjct: 141 KDE 143
>gi|295098912|emb|CBK88001.1| ribosome-binding factor A [Eubacterium cylindroides T2-87]
Length = 111
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 61/114 (53%), Gaps = 14/114 (12%)
Query: 77 IQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVFGDDR 136
+QRE+S+ +LQF L LG T++DV+ + DL KVYV+ G
Sbjct: 12 LQREISN------ILQFD-LKNPKLG-------FVTVTDVQCTRDLSQAKVYVTFLGKQE 57
Query: 137 GKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRIK 190
+ + LK ++RS L +RM +R P++ FI+D S E+G+R+ IL I+
Sbjct: 58 RNDAGMKILKQSKGFIRSTLAKRMTIRKMPDLIFIQDTSLEQGNRIERILKDIQ 111
>gi|24372788|ref|NP_716830.1| ribosome-binding factor A RbfA [Shewanella oneidensis MR-1]
gi|29427753|sp|Q8EHL4.1|RBFA_SHEON RecName: Full=Ribosome-binding factor A
gi|24346873|gb|AAN54275.1| ribosome-binding factor A RbfA [Shewanella oneidensis MR-1]
Length = 147
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 81/156 (51%), Gaps = 19/156 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + +Q+Q+EL+ +L D + + +G T++DV+VS DL KV+
Sbjct: 7 RTRRIGQQLQQELAVVLQRD-------MKDPRIG-------FVTVNDVDVSRDLSYAKVF 52
Query: 129 VSVFGDDRGK-EVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
V+ F +D+ + + L + A Y+R+ + RMKLR+ PEIRF+ D S G R+ ++
Sbjct: 53 VTFFEEDKDVVQEKLNALIAAAPYIRTLVAGRMKLRVMPEIRFVYDSSLVEGMRMSNLVS 112
Query: 188 RIKAEKEAAKSKNKEQFESPDLPEDERDWEGDDPDE 223
++ +A ++QF S D E D E D E
Sbjct: 113 QVINSDKA----KQQQFGSVDDDVIENDIEESDDTE 144
>gi|339050892|ref|ZP_08647723.1| Ribosome-binding factor A [gamma proteobacterium IMCC2047]
gi|330721902|gb|EGG99855.1| Ribosome-binding factor A [gamma proteobacterium IMCC2047]
Length = 130
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 76/135 (56%), Gaps = 16/135 (11%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA+ R + VA QIQ+EL+ ++ + + + LG + T+S V+VS DL
Sbjct: 1 MADSSRRQRVADQIQKELAGLIQRE-------MKDPRLG-------MVTVSAVDVSRDLA 46
Query: 124 VVKVYVSVFGDD--RGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSR 181
V++++ G D ++ + L A ++R +L R M+LR+ P +RF DES ERG+R
Sbjct: 47 YADVFITMLGKDDAEARQQTLDILGRGAGFLRGKLARAMRLRIVPALRFRYDESIERGAR 106
Query: 182 VIAILDRIKAEKEAA 196
+ ++++ + + +A+
Sbjct: 107 LSSLIEDARKKDQAS 121
>gi|422344873|ref|ZP_16425797.1| ribosome-binding factor A [Selenomonas noxia F0398]
gi|355376327|gb|EHG23581.1| ribosome-binding factor A [Selenomonas noxia F0398]
Length = 123
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 69/129 (53%), Gaps = 14/129 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
RV+ + + +++E+SD++ F L + +G T++ V + DL+ K+Y
Sbjct: 5 RVEKLQELMKQEISDII-------FHELKDPRIG-------FVTVTSVACTEDLREAKIY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VSV GD++ + GL S +VR ++G+R++LR TPEI F D S + +L+
Sbjct: 51 VSVMGDEKKARDTLNGLNSSLGFVRREIGKRIRLRFTPEISFALDTSLSYSDHIQRLLNE 110
Query: 189 IKAEKEAAK 197
I ++ A +
Sbjct: 111 IHEDRPAGE 119
>gi|374582844|ref|ZP_09655938.1| ribosome-binding factor A [Desulfosporosinus youngiae DSM 17734]
gi|374418926|gb|EHQ91361.1| ribosome-binding factor A [Desulfosporosinus youngiae DSM 17734]
Length = 124
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 52/94 (55%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEI 168
T++ V+V+ DL KVYVSV G + ++ L A ++RS++G+R++LR TP I
Sbjct: 31 GFVTLTSVDVADDLSHAKVYVSVLGTEEEGNASLNSLNRAAGFIRSEIGKRVRLRHTPSI 90
Query: 169 RFIEDESFERGSRVIAILDRIKAEKEAAKSKNKE 202
F D S + G+ + +L + A E K + E
Sbjct: 91 VFKYDPSIQHGAHIAKLLKDVGASDETGKEDSHE 124
>gi|384419828|ref|YP_005629188.1| ribosome-binding factor A [Xanthomonas oryzae pv. oryzicola BLS256]
gi|353462741|gb|AEQ97020.1| ribosome-binding factor A [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 130
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 112 TISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFI 171
++SDVE+S DL KV+V+ +R E A+ GLK A +R+QL R MKLR PE+ F
Sbjct: 37 SVSDVEISRDLAHAKVFVTALQQERSAE-AVKGLKDIAGQLRTQLARAMKLRHVPELHFH 95
Query: 172 EDESFERGSRVIAILDRIKAEKEAAKSKNKE 202
D+S +RG R+ +L + A+S +++
Sbjct: 96 YDDSVDRGERIDNLLRDLDDVGPGARSSDED 126
>gi|154244249|ref|YP_001415207.1| ribosome-binding factor A [Xanthobacter autotrophicus Py2]
gi|238686704|sp|A7IC07.1|RBFA_XANP2 RecName: Full=Ribosome-binding factor A
gi|154158334|gb|ABS65550.1| ribosome-binding factor A [Xanthobacter autotrophicus Py2]
Length = 151
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 69/121 (57%), Gaps = 16/121 (13%)
Query: 68 RRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKV 127
+R+ V + ++ L+D VLQ + + L A + T+ +V +S DL++
Sbjct: 13 QRMLRVGELVRHALAD------VLQRGSVTDPVLAA-----HIITVPEVRMSPDLKIATC 61
Query: 128 YVSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
YV G GK++ I L + A+Y+R ++GRRM+L+ PE+RF ED SF+ G+R+ A+
Sbjct: 62 YVMPLG---GKDITPVIKALAANARYLRLEVGRRMELKSVPELRFREDTSFDEGARMDAL 118
Query: 186 L 186
L
Sbjct: 119 L 119
>gi|390559434|ref|ZP_10243769.1| Ribosome-binding factor A [Nitrolancetus hollandicus Lb]
gi|390173999|emb|CCF83063.1| Ribosome-binding factor A [Nitrolancetus hollandicus Lb]
Length = 157
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 20/146 (13%)
Query: 68 RRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKV 127
RR + VA+ ++ E+S+++ + + + LG +I+ VE+S DL+ KV
Sbjct: 25 RRQEQVAEFLRDEVSEIITRE-------MKDPRLG-------FVSITRVELSPDLRYAKV 70
Query: 128 YVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
++SVFG + +E + L A +VR QL RM++R PEI F D S E V L+
Sbjct: 71 FISVFGSEEEREATLRALTGAAGFVRYQLKPRMRIRHIPEISFQLDRSMEHAEEVARTLN 130
Query: 188 RIKAEKEAAKSKNKEQFESPDLPEDE 213
+I+ ++ E PD P E
Sbjct: 131 KIRRRNPSSAG------EPPDEPRGE 150
>gi|78048392|ref|YP_364567.1| ribosome-binding factor A [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|294624707|ref|ZP_06703374.1| ribosome-binding factor A [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|294665174|ref|ZP_06730474.1| ribosome-binding factor A [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
gi|325924692|ref|ZP_08186130.1| ribosome-binding factor A [Xanthomonas perforans 91-118]
gi|346725510|ref|YP_004852179.1| ribosome-binding factor A [Xanthomonas axonopodis pv. citrumelo F1]
gi|390990558|ref|ZP_10260842.1| ribosome-binding factor A [Xanthomonas axonopodis pv. punicae str.
LMG 859]
gi|418517283|ref|ZP_13083448.1| ribosome-binding factor A [Xanthomonas axonopodis pv. malvacearum
str. GSPB1386]
gi|418520422|ref|ZP_13086471.1| ribosome-binding factor A [Xanthomonas axonopodis pv. malvacearum
str. GSPB2388]
gi|123584681|sp|Q3BRP6.1|RBFA_XANC5 RecName: Full=Ribosome-binding factor A
gi|78036822|emb|CAJ24515.1| ribosomal-binding factor A [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|292600980|gb|EFF45050.1| ribosome-binding factor A [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|292605038|gb|EFF48389.1| ribosome-binding factor A [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
gi|325544898|gb|EGD16243.1| ribosome-binding factor A [Xanthomonas perforans 91-118]
gi|346650257|gb|AEO42881.1| ribosome-binding factor A [Xanthomonas axonopodis pv. citrumelo F1]
gi|372554761|emb|CCF67817.1| ribosome-binding factor A [Xanthomonas axonopodis pv. punicae str.
LMG 859]
gi|410703803|gb|EKQ62291.1| ribosome-binding factor A [Xanthomonas axonopodis pv. malvacearum
str. GSPB2388]
gi|410706009|gb|EKQ64474.1| ribosome-binding factor A [Xanthomonas axonopodis pv. malvacearum
str. GSPB1386]
Length = 130
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 112 TISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFI 171
++SDVE+S DL KV+V+ +R E A+ GLK A +R+QL R MKLR PE+ F
Sbjct: 37 SVSDVEISRDLAHAKVFVTALQQERSAE-AVKGLKEIAGQLRTQLARAMKLRHVPELHFH 95
Query: 172 EDESFERGSRVIAIL 186
D+S +RG R+ +L
Sbjct: 96 YDDSVDRGERIDNLL 110
>gi|325915556|ref|ZP_08177867.1| ribosome-binding factor A [Xanthomonas vesicatoria ATCC 35937]
gi|325538272|gb|EGD09957.1| ribosome-binding factor A [Xanthomonas vesicatoria ATCC 35937]
Length = 130
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 112 TISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFI 171
++SDVE+S DL KV+V+ +R E A+ GLK A +R+QL R MKLR PE+ F
Sbjct: 37 SVSDVEISRDLAHAKVFVTALQQERSAE-AVKGLKEIAGQLRTQLARAMKLRHVPELHFH 95
Query: 172 EDESFERGSRVIAIL 186
D+S +RG R+ +L
Sbjct: 96 YDDSVDRGERIDNLL 110
>gi|196229762|ref|ZP_03128626.1| ribosome-binding factor A [Chthoniobacter flavus Ellin428]
gi|196226088|gb|EDY20594.1| ribosome-binding factor A [Chthoniobacter flavus Ellin428]
Length = 128
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 52/85 (61%)
Query: 106 YLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLT 165
+ ++L T+ V+++ DL+ V++SV G D A+A L K ++ L +R+ L+ T
Sbjct: 26 FEAALVTVQQVDITPDLKHAHVFISVIGSDEQARAAMAKLHDSRKNLQHLLSKRVVLKYT 85
Query: 166 PEIRFIEDESFERGSRVIAILDRIK 190
P + F DES ERG+RVI IL +I+
Sbjct: 86 PHLHFKLDESIERGTRVINILSQIE 110
>gi|422306051|ref|ZP_16393237.1| ribosome-binding factor A [Vibrio cholerae CP1035(8)]
gi|408627434|gb|EKL00242.1| ribosome-binding factor A [Vibrio cholerae CP1035(8)]
Length = 132
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 66/115 (57%), Gaps = 15/115 (13%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + VA+Q+Q+EL+ M+L +V ++ LG + TISDVEVS DL KV+
Sbjct: 7 RTQRVAQQLQKELA-MILQREV------RDSRLG-------MVTISDVEVSRDLAYAKVF 52
Query: 129 VSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
V+ ++ E +A L+ +R LG++++LRLTPEIRF D + G R+
Sbjct: 53 VTFLCIGEKTPESCLAALREHEVQIRMMLGKQIRLRLTPEIRFYYDNTLVEGMRM 107
>gi|163802305|ref|ZP_02196199.1| ribosome-binding factor A [Vibrio sp. AND4]
gi|159173834|gb|EDP58648.1| ribosome-binding factor A [Vibrio sp. AND4]
Length = 135
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 71/125 (56%), Gaps = 15/125 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + V++Q+Q+EL+ M+L +V ++ LG + TISDVE S DL KV+
Sbjct: 7 RTQRVSQQLQKELA-MILQREV------RDSRLG-------MVTISDVEASRDLAYAKVF 52
Query: 129 VSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
V+ ++ E +A L+ ++R LG+R++LRLTPEIRF D + G R+ ++
Sbjct: 53 VTFLCVGEQTPESCLAALREHEVHIRMMLGKRIRLRLTPEIRFYYDNTLVEGMRMSNLVS 112
Query: 188 RIKAE 192
+ +E
Sbjct: 113 EVVSE 117
>gi|15836841|ref|NP_297529.1| ribosome-binding factor A [Xylella fastidiosa 9a5c]
gi|20978662|sp|Q9PGR2.1|RBFA_XYLFA RecName: Full=Ribosome-binding factor A
gi|9105047|gb|AAF83049.1|AE003877_4 ribosomal-binding factor A [Xylella fastidiosa 9a5c]
Length = 125
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 68/119 (57%), Gaps = 15/119 (12%)
Query: 68 RRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKV 127
+R + ++ QI R+L ++Q AV D L S++ +SDVEV+ D+ KV
Sbjct: 7 QRAERISVQIHRDLG------ALVQAAV-------RDHGLPSMS-VSDVEVTRDMAHAKV 52
Query: 128 YVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
+V+ +R E A+AGLK+ A+ +R QL M+LR PE+ F D+S +RG R+ +L
Sbjct: 53 FVTALQAERSFE-AVAGLKALARELRMQLAHTMRLRFVPELHFHYDDSLDRGERINTLL 110
>gi|334705600|ref|ZP_08521466.1| ribosome-binding factor A [Aeromonas caviae Ae398]
Length = 144
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 79/151 (52%), Gaps = 22/151 (14%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + V +QIQRE++ +LQ V + +G + T+SDVEVS DL KVY
Sbjct: 7 RTRRVGQQIQREIA------LILQREV-KDPRIG-------MVTVSDVEVSKDLNYAKVY 52
Query: 129 VSVF----GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIA 184
V+ +R KE + GL A Y+RS LG M+LR+ PE+RF D++ G R+
Sbjct: 53 VTFLQLENDAERIKE-GLKGLTEAAGYIRSLLGSAMRLRVVPELRFYYDQTLVEGMRLSN 111
Query: 185 IL-DRIKAEKE--AAKSKNKEQFESPDLPED 212
++ + ++ +K +++EQ D ED
Sbjct: 112 LVTNTVREDKRRMTEAGRDEEQSAPDDTTED 142
>gi|289665192|ref|ZP_06486773.1| ribosome-binding factor A [Xanthomonas campestris pv. vasculorum
NCPPB 702]
gi|289667362|ref|ZP_06488437.1| ribosome-binding factor A [Xanthomonas campestris pv. musacearum
NCPPB 4381]
Length = 130
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 112 TISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFI 171
++SDVE+S DL KV+V+ +R E A+ GLK A +R+QL R MKLR PE+ F
Sbjct: 37 SVSDVEISRDLAHAKVFVTALQQERSAE-AVKGLKEIAGQLRTQLARAMKLRHVPELHFH 95
Query: 172 EDESFERGSRVIAIL 186
D+S +RG R+ +L
Sbjct: 96 YDDSVDRGERIDNLL 110
>gi|197106896|ref|YP_002132273.1| ribosome-binding factor A [Phenylobacterium zucineum HLK1]
gi|238690151|sp|B4RC51.1|RBFA_PHEZH RecName: Full=Ribosome-binding factor A
gi|196480316|gb|ACG79844.1| ribosome-binding factor A [Phenylobacterium zucineum HLK1]
Length = 145
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 111 TTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRF 170
T+++V VS DL+ V+V G + EV + L A+++R LGR ++LR TPE++F
Sbjct: 49 VTVTEVRVSPDLRHATVFVEPLGGEHADEV-VQALNRHARFLRGHLGRAIELRFTPELKF 107
Query: 171 IEDESFERGSRVIAILDRIKAEKE 194
+ DESF +R+ + D K ++
Sbjct: 108 LHDESFNEAARMAKLFDDPKVRQD 131
>gi|387129545|ref|YP_006292435.1| ribosome-binding factor A [Methylophaga sp. JAM7]
gi|386270834|gb|AFJ01748.1| Ribosome-binding factor A [Methylophaga sp. JAM7]
Length = 128
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 59/96 (61%), Gaps = 3/96 (3%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFG---DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLT 165
SL T+S V+V+ADL+ ++YV+ F D + + GL++ A ++R QL +R+KLR+
Sbjct: 33 SLVTVSHVDVTADLKYARIYVTRFNGFDSDAAADECLQGLQNAAGFLRRQLAKRVKLRVM 92
Query: 166 PEIRFIEDESFERGSRVIAILDRIKAEKEAAKSKNK 201
PE++F D+S E G + ++ + A++ +N+
Sbjct: 93 PELQFRYDKSLEHGFYMDELISKANADQHKPDDENE 128
>gi|302039402|ref|YP_003799724.1| ribosome-binding factor A [Candidatus Nitrospira defluvii]
gi|300607466|emb|CBK43799.1| Ribosome-binding factor A [Candidatus Nitrospira defluvii]
Length = 132
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 70/119 (58%), Gaps = 14/119 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R VA QI+ E++D+L+ K+ D + S+T ++DVE++ DL++ +V+
Sbjct: 8 RADRVADQIRMEVADILMR-KI------------KDPRVRSVT-VTDVELTKDLRIARVF 53
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
V+ ++ + + GL + +VR++LGRR+ LR PE+ F++D S R RV+ +LD
Sbjct: 54 VTTMEQNKDERLVFDGLAKASGFVRAELGRRLALRYLPELIFMKDISGPRADRVLELLD 112
>gi|120597901|ref|YP_962475.1| ribosome-binding factor A [Shewanella sp. W3-18-1]
gi|146293927|ref|YP_001184351.1| ribosome-binding factor A [Shewanella putrefaciens CN-32]
gi|166219405|sp|A4Y9B9.1|RBFA_SHEPC RecName: Full=Ribosome-binding factor A
gi|166219407|sp|A1RGX6.1|RBFA_SHESW RecName: Full=Ribosome-binding factor A
gi|120557994|gb|ABM23921.1| ribosome-binding factor A [Shewanella sp. W3-18-1]
gi|145565617|gb|ABP76552.1| ribosome-binding factor A [Shewanella putrefaciens CN-32]
Length = 149
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 63/108 (58%), Gaps = 7/108 (6%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGK-EVAIAGLKSKAKYVRSQLGRRMKLRLTPE 167
T++DV+VS DL KV+V+ F +D+ + + L S A Y+R+ + RMKLR+ PE
Sbjct: 33 GFVTVNDVDVSRDLSYAKVFVTFFEEDKAVVQEKLNALISAAPYIRTLVAGRMKLRVMPE 92
Query: 168 IRFIEDESFERGSRVIAILDRIKAEKEAAKSKNKEQFESPD--LPEDE 213
+RF+ D S G R+ ++ ++ + +A ++QF S D L EDE
Sbjct: 93 LRFVYDSSLVEGMRMSNLVSQVINQDKA----KQQQFGSADEVLNEDE 136
>gi|399516238|ref|ZP_10757849.1| Ribosome-binding factor A [Leuconostoc pseudomesenteroides 4882]
gi|398648966|emb|CCJ65876.1| Ribosome-binding factor A [Leuconostoc pseudomesenteroides 4882]
Length = 117
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 68/125 (54%), Gaps = 25/125 (20%)
Query: 64 MANPRRVKMVAKQIQRELSDMLL---TDKVLQFAVLPEAALGADRYLSSLTTISDVEVSA 120
MANP+R +A+++QR+++D+LL D +Q T++ VE++
Sbjct: 1 MANPQRAGRLAQEVQRDVTDLLLKRINDPRVQD-----------------VTVTSVELTG 43
Query: 121 DLQVVKVYVSVFGD---DRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFE 177
DLQ+ +Y S+ D D K A AGL++ + +R +LG R+ + PE++F+ D S +
Sbjct: 44 DLQIATIYYSILSDLASDAKK--AQAGLEAASGLIRKELGSRLTVYKIPELKFVRDNSVQ 101
Query: 178 RGSRV 182
G+ +
Sbjct: 102 YGNHI 106
>gi|392541169|ref|ZP_10288306.1| ribosome-binding factor A, role in processing of 16S rRNA
[Pseudoalteromonas piscicida JCM 20779]
gi|409203896|ref|ZP_11232099.1| ribosome-binding factor A, role in processing of 16S rRNA
[Pseudoalteromonas flavipulchra JG1]
Length = 134
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 78/143 (54%), Gaps = 21/143 (14%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R VA+QIQ+E++ +L + + + LG + T+S VEVS DL KV+
Sbjct: 6 RTDRVAQQIQKEIAVILQRE-------IKDPRLG-------MVTVSAVEVSRDLSYAKVF 51
Query: 129 VSVFG---DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
++V +D+ K+ A A L Y+RS LG+R++ R+ PE++F+ D S G R+ +
Sbjct: 52 ITVLNTSDEDKTKQSA-AILNEATGYIRSLLGKRIRARIMPELKFVIDNSLMEGMRISNL 110
Query: 186 LDRIKAEKEAAK---SKNKEQFE 205
+D + E A + S +K+Q E
Sbjct: 111 VDSVIREDNAKRGPESGDKDQEE 133
>gi|339624982|ref|ZP_08660771.1| ribosome-binding factor A [Fructobacillus fructosus KCTC 3544]
Length = 119
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 69/129 (53%), Gaps = 25/129 (19%)
Query: 64 MANPRRVKMVAKQIQRELSDMLL---TDKVLQFAVLPEAALGADRYLSSLTTISDVEVSA 120
MAN +R +A++IQ+++SD+LL D +Q T++ V+VS
Sbjct: 1 MANAQRAGRLAQEIQKDVSDLLLKRVNDPRVQD-----------------VTVTSVDVSG 43
Query: 121 DLQVVKVYVSVFGD---DRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFE 177
DLQ+ +Y S+ D DR K A AGL++ + +R +LG R+ + PEI FI D S +
Sbjct: 44 DLQIANIYYSILSDLASDRKK--AQAGLEAASGLIRRELGSRLTVYKIPEIHFILDNSIQ 101
Query: 178 RGSRVIAIL 186
G + +++
Sbjct: 102 YGDHIESLI 110
>gi|365539345|ref|ZP_09364520.1| ribosome-binding factor A [Vibrio ordalii ATCC 33509]
Length = 138
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 76/135 (56%), Gaps = 20/135 (14%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + V++Q+Q+EL+ M++ +V ++ LG + TIS+VEVS DL KV+
Sbjct: 7 RTQRVSQQLQKELA-MIIQREV------RDSRLG-------MVTISEVEVSRDLAYAKVF 52
Query: 129 VSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
V+ ++ E +A LK ++R LG+R++LRLTPEIRF D + G R+ ++
Sbjct: 53 VTFLCVGEQTPESCLAALKEHEVHIRMMLGKRIRLRLTPEIRFTYDNTLVEGMRMSNLVT 112
Query: 188 RI-----KAEKEAAK 197
+ + +KEA +
Sbjct: 113 EVVSNDKRRQKEAGR 127
>gi|113460965|ref|YP_719032.1| ribosome-binding factor A [Haemophilus somnus 129PT]
gi|170717522|ref|YP_001784613.1| ribosome-binding factor A [Haemophilus somnus 2336]
gi|123327302|sp|Q0I3P4.1|RBFA_HAES1 RecName: Full=Ribosome-binding factor A
gi|189039544|sp|B0UU14.1|RBFA_HAES2 RecName: Full=Ribosome-binding factor A
gi|112823008|gb|ABI25097.1| ribosome-binding factor A [Haemophilus somnus 129PT]
gi|168825651|gb|ACA31022.1| ribosome-binding factor A [Haemophilus somnus 2336]
Length = 126
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVF--GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTP 166
+ T+SDVE+S+DL K++V+ D+ E + GL+ + Y+RS LG+ M+LR+ P
Sbjct: 33 GMVTVSDVEISSDLAYAKIFVTFLFDQDENVIEQGMKGLEKASPYIRSLLGKVMRLRIVP 92
Query: 167 EIRFIEDESFERGSRVIAILDRIKAEKE 194
E+RFI D+S G R+ ++ + E E
Sbjct: 93 ELRFIYDQSLVDGMRMSNLVTNVVREDE 120
>gi|21243415|ref|NP_642997.1| ribosome-binding factor A [Xanthomonas axonopodis pv. citri str.
306]
gi|24418644|sp|Q8PJ56.1|RBFA_XANAC RecName: Full=Ribosome-binding factor A
gi|21108966|gb|AAM37533.1| ribosomal-binding factor A [Xanthomonas axonopodis pv. citri str.
306]
Length = 130
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 112 TISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFI 171
++SDVE+S DL KV+V+ +R E A+ GLK A +R+QL R MKLR PE+ F
Sbjct: 37 SVSDVEISRDLAHAKVFVTALQQERSAE-AVKGLKEIAGQLRTQLARAMKLRHVPELHFH 95
Query: 172 EDESFERGSRVIAIL 186
D+S +RG R+ +L
Sbjct: 96 YDDSVDRGERIDNLL 110
>gi|375109202|ref|ZP_09755452.1| ribosome-binding factor, role in processing of 10S rRNA
[Alishewanella jeotgali KCTC 22429]
gi|374570761|gb|EHR41894.1| ribosome-binding factor, role in processing of 10S rRNA
[Alishewanella jeotgali KCTC 22429]
Length = 135
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKL 162
D L ++ T+SDVEVS DL KV+V+ G DD E + L + ++RS +G+R++
Sbjct: 28 DPRLHTMITVSDVEVSRDLSHAKVFVTFLGMDDSKVEDNLKILNDASGFIRSLIGKRIQT 87
Query: 163 RLTPEIRFIEDESFERGSRVIAILDRIKAEKEAAKSK 199
R+ P IRF D+S G R+ ++D ++ + E + +
Sbjct: 88 RIVPHIRFAFDQSLNEGIRMANLVDTVRKDDERKRQQ 124
>gi|393764351|ref|ZP_10352963.1| ribosome-binding factor A [Alishewanella agri BL06]
gi|397170776|ref|ZP_10494186.1| ribosome-binding factor, role in processing of 10S rRNA
[Alishewanella aestuarii B11]
gi|392604981|gb|EIW87880.1| ribosome-binding factor A [Alishewanella agri BL06]
gi|396087250|gb|EJI84850.1| ribosome-binding factor, role in processing of 10S rRNA
[Alishewanella aestuarii B11]
Length = 135
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKL 162
D L ++ T+SDVEVS DL KV+V+ G DD E + L + ++RS +G+R++
Sbjct: 28 DPRLHTMITVSDVEVSRDLSHAKVFVTFLGMDDSKVEDNLKILNEASGFIRSLIGKRIQT 87
Query: 163 RLTPEIRFIEDESFERGSRVIAILDRIKAEKEAAKSK 199
R+ P IRF D+S G R+ ++D ++ + E + +
Sbjct: 88 RIVPHIRFAFDQSLNEGIRMANLVDTVRKDDERKRQQ 124
>gi|145298045|ref|YP_001140886.1| ribosome-binding factor A [Aeromonas salmonicida subsp. salmonicida
A449]
gi|418361749|ref|ZP_12962396.1| ribosome-binding factor A [Aeromonas salmonicida subsp. salmonicida
01-B526]
gi|166218416|sp|A4SJR6.1|RBFA_AERS4 RecName: Full=Ribosome-binding factor A
gi|142850817|gb|ABO89138.1| ribosome-binding factor A [Aeromonas salmonicida subsp. salmonicida
A449]
gi|356686865|gb|EHI51455.1| ribosome-binding factor A [Aeromonas salmonicida subsp. salmonicida
01-B526]
Length = 144
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 75/145 (51%), Gaps = 19/145 (13%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R V +QIQRE++ +LQ V + +G + T+SDVEVS DL KVY
Sbjct: 7 RTNRVGQQIQREIA------LILQREV-KDPRIG-------MVTVSDVEVSKDLNYAKVY 52
Query: 129 VSVFGDDRGKEVAIAGLKS---KAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
V+ D E GLK A Y+RS LG M+LR+ PE+RF D++ G R+ +
Sbjct: 53 VTFLQLDIDAERIAEGLKGLTEAAGYIRSLLGSAMRLRVVPELRFYYDQTLVEGMRISNL 112
Query: 186 L-DRIKAEKEAAKSKNKEQFE-SPD 208
+ + ++ +K +E+ E +PD
Sbjct: 113 VSNTVRDDKRRMAEAGREEDEAAPD 137
>gi|58582840|ref|YP_201856.1| ribosome-binding factor A [Xanthomonas oryzae pv. oryzae KACC
10331]
gi|84624707|ref|YP_452079.1| ribosome-binding factor A [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|62510970|sp|Q5GXV0.1|RBFA_XANOR RecName: Full=Ribosome-binding factor A
gi|123521403|sp|Q2P0X2.1|RBFA_XANOM RecName: Full=Ribosome-binding factor A
gi|58427434|gb|AAW76471.1| ribosomal-binding factor A [Xanthomonas oryzae pv. oryzae KACC
10331]
gi|84368647|dbj|BAE69805.1| ribosomal-binding factor A [Xanthomonas oryzae pv. oryzae MAFF
311018]
Length = 130
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 112 TISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFI 171
++SDVE+S DL KV+V+ +R E A+ GLK A +R+QL R MKLR PE+ F
Sbjct: 37 SVSDVEISRDLAHAKVFVTALQQERSAE-AVKGLKDIAGQLRTQLARAMKLRHVPELHFH 95
Query: 172 EDESFERGSRVIAIL 186
D+S +RG R+ +L
Sbjct: 96 YDDSVDRGERIDNLL 110
>gi|381171254|ref|ZP_09880402.1| ribosome-binding factor A [Xanthomonas citri pv. mangiferaeindicae
LMG 941]
gi|380688323|emb|CCG36889.1| ribosome-binding factor A [Xanthomonas citri pv. mangiferaeindicae
LMG 941]
Length = 115
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 111 TTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRF 170
++SDVE+S DL KV+V+ +R E A+ GLK A +R+QL R MKLR PE+ F
Sbjct: 21 VSVSDVEISRDLAHAKVFVTALQQERSAE-AVKGLKEIAGQLRTQLARAMKLRHVPELHF 79
Query: 171 IEDESFERGSRVIAIL 186
D+S +RG R+ +L
Sbjct: 80 HYDDSVDRGERIDNLL 95
>gi|292669513|ref|ZP_06602939.1| ribosome-binding factor A [Selenomonas noxia ATCC 43541]
gi|292648876|gb|EFF66848.1| ribosome-binding factor A [Selenomonas noxia ATCC 43541]
Length = 133
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 71/133 (53%), Gaps = 14/133 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
RV+ + + +++E+SD++ F L + +G T++ V + DL+ K+Y
Sbjct: 14 RVEKLQELMKQEISDII-------FHELKDPRIG-------FVTVTSVACTEDLREAKIY 59
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VSV GD++ + GL S +VR ++G+R++LR TPEI F D S + +L+
Sbjct: 60 VSVMGDEKKARDTLNGLNSSLGFVRREIGKRIRLRFTPEISFALDTSLSYSDHIQRLLNE 119
Query: 189 IKAEKEAAKSKNK 201
I ++ A + + +
Sbjct: 120 IHEDRPAGEKEEE 132
>gi|300024999|ref|YP_003757610.1| ribosome-binding factor A [Hyphomicrobium denitrificans ATCC 51888]
gi|299526820|gb|ADJ25289.1| ribosome-binding factor A [Hyphomicrobium denitrificans ATCC 51888]
Length = 132
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 71/139 (51%), Gaps = 12/139 (8%)
Query: 59 KTVKCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEV 118
KT+ A +R+ V + I+ ++++ML + D S + TI +V +
Sbjct: 6 KTLPSKAPSQRMLRVGELIRHKIAEML-----------SRGEIHDDVLASHVITIPEVRL 54
Query: 119 SADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFER 178
S DL++ VYV G + K V I L KY+R+++ + LR P++RF EDE+FE
Sbjct: 55 SPDLKLATVYVMPLGGNDVKPV-IEALTRNKKYIRAEVAHTLNLRYAPDLRFREDETFEE 113
Query: 179 GSRVIAILDRIKAEKEAAK 197
+R+ +LD K ++ K
Sbjct: 114 ATRIDRLLDSEKVRRDTGK 132
>gi|336450008|ref|ZP_08620465.1| ribosome-binding factor A [Idiomarina sp. A28L]
gi|336283165|gb|EGN76372.1| ribosome-binding factor A [Idiomarina sp. A28L]
Length = 126
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 110 LTTISDVEVSADLQVVKVYVSVFGDDRGK-EVAIAGLKSKAKYVRSQLGRRMKLRLTPEI 168
+ T++DVEVS DL KV+V+ D+ + +VA+ L + Y+RS LG+R+K R+TP +
Sbjct: 34 MPTVNDVEVSRDLAYAKVFVTFLQDEEEQIKVALQVLNDASGYIRSLLGKRIKSRITPNL 93
Query: 169 RFIEDESFERGSRVIAILDRIKAEKEAAKSKN 200
RF+ D S G R+ ++ + + E ++N
Sbjct: 94 RFVHDFSLSEGIRMAKLVREAREQDEKKNNQN 125
>gi|149178850|ref|ZP_01857430.1| probable ribosome-binding factor A [Planctomyces maris DSM 8797]
gi|148842325|gb|EDL56708.1| probable ribosome-binding factor A [Planctomyces maris DSM 8797]
Length = 139
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 65/112 (58%), Gaps = 6/112 (5%)
Query: 112 TISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFI 171
T+ V+V+ D+Q K+Y+S+ GD++ K + + GL+S +++S++ R++ + TP I+F+
Sbjct: 34 TVLHVDVAPDVQSAKIYISIMGDEKEKALCMHGLQSAKGFLQSKIADRIQTKYTPVIKFV 93
Query: 172 EDESFERGSRVIAILDRIKAEKEAAKSKNKEQFESPDLPEDERDWEGDDPDE 223
D + + I ILD ++ E+EA E+ E+ R + ++P E
Sbjct: 94 LDTAVKDSLDTIRILDELQVEREA------EELAENSSSEEVRGTDEENPQE 139
>gi|218282335|ref|ZP_03488625.1| hypothetical protein EUBIFOR_01207 [Eubacterium biforme DSM 3989]
gi|218216708|gb|EEC90246.1| hypothetical protein EUBIFOR_01207 [Eubacterium biforme DSM 3989]
Length = 112
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 14/113 (12%)
Query: 77 IQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVFGDDR 136
IQRE+S ++LQF L LG TI+DV + DL KVYV+ G
Sbjct: 12 IQREIS------RILQFE-LKNPNLG-------FCTITDVRCTNDLSQAKVYVTFLGKQG 57
Query: 137 GKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRI 189
+ + L ++RSQ+ +++K+R PE+ F++D S E+G+++ IL I
Sbjct: 58 RNDAGMRVLNQSKGFIRSQVAKKIKIRKMPELIFVQDTSLEQGNKIENILKEI 110
>gi|418324145|ref|ZP_12935396.1| ribosome-binding factor A [Staphylococcus pettenkoferi VCU012]
gi|365227642|gb|EHM68834.1| ribosome-binding factor A [Staphylococcus pettenkoferi VCU012]
Length = 114
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 45/71 (63%)
Query: 112 TISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFI 171
TI+DV ++ DL KVY++V G + E GL+ +++S+LG RM+LR PE+ F
Sbjct: 33 TITDVHLTNDLSQAKVYLTVLGSKKEVENTFKGLEKATGFIKSELGSRMRLRTIPELEFE 92
Query: 172 EDESFERGSRV 182
DES E G+++
Sbjct: 93 YDESIEYGNKI 103
>gi|255024282|ref|ZP_05296268.1| ribosome-binding factor A [Listeria monocytogenes FSL J1-208]
Length = 106
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 48/78 (61%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEI 168
T++ V+V+ DLQ KV++S+ G D+ KE + L ++RS++GRR++LR PE+
Sbjct: 22 GFVTVTGVDVTGDLQEAKVFISILGTDKEKENTLLALAKAHGFIRSEIGRRIRLRKVPEM 81
Query: 169 RFIEDESFERGSRVIAIL 186
F D S G+R+ +L
Sbjct: 82 SFEIDNSIAYGNRIDELL 99
>gi|386829219|ref|ZP_10116326.1| ribosome-binding factor A [Beggiatoa alba B18LD]
gi|386430103|gb|EIJ43931.1| ribosome-binding factor A [Beggiatoa alba B18LD]
Length = 137
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 73/140 (52%), Gaps = 14/140 (10%)
Query: 68 RRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKV 127
+R + V + IQR+L+D++ D + +++LG + TI+ V+VS DL+ KV
Sbjct: 6 KRTQRVGEMIQRDLADIIRRD-------INDSSLG-------MITIASVDVSPDLKYAKV 51
Query: 128 YVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
Y+S+ + R +A L A +R +L +R+ +R+TP + FI D + E ++ ++D
Sbjct: 52 YISLLANKREPAEVVALLNQAAGSLRHELAQRLTIRVTPRLHFIHDGTVEYALQLSHLID 111
Query: 188 RIKAEKEAAKSKNKEQFESP 207
+ A + + +P
Sbjct: 112 SVVPSPLADGETDADNANNP 131
>gi|344943497|ref|ZP_08782784.1| Ribosome-binding factor A [Methylobacter tundripaludum SV96]
gi|344260784|gb|EGW21056.1| Ribosome-binding factor A [Methylobacter tundripaludum SV96]
Length = 120
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 68/124 (54%), Gaps = 15/124 (12%)
Query: 73 VAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVF 132
V+ Q+Q+ELS +L D + ++ LG TI++V V+ DL V KVYV+V
Sbjct: 11 VSSQMQKELSLVLQRD-------IDDSRLG-------FITINEVVVTKDLAVAKVYVTVL 56
Query: 133 G-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRIKA 191
D++GK+ + L + +R QL +RM+LR ++RF D+SF+ G RV +L +
Sbjct: 57 NVDEQGKKANVKLLNEMSPVIRHQLAKRMRLRHISDLRFYYDDSFDTGMRVSELLSGLDK 116
Query: 192 EKEA 195
E
Sbjct: 117 RDEG 120
>gi|161582021|ref|NP_230293.2| ribosome-binding factor A [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|255744139|ref|ZP_05418092.1| ribosome-binding factor A [Vibrio cholera CIRS 101]
gi|258624685|ref|ZP_05719619.1| ribosome-binding factor A [Vibrio mimicus VM603]
gi|262156115|ref|ZP_06029234.1| ribosome-binding factor A [Vibrio cholerae INDRE 91/1]
gi|262169943|ref|ZP_06037633.1| ribosome-binding factor A [Vibrio cholerae RC27]
gi|262189598|ref|ZP_06047996.1| ribosome-binding factor A [Vibrio cholerae CT 5369-93]
gi|360034460|ref|YP_004936223.1| ribosome-binding factor A [Vibrio cholerae O1 str. 2010EL-1786]
gi|379740503|ref|YP_005332472.1| ribosome-binding factor A [Vibrio cholerae IEC224]
gi|384423892|ref|YP_005633250.1| Ribosome-binding factor A [Vibrio cholerae LMA3984-4]
gi|417812606|ref|ZP_12459266.1| ribosome-binding factor A [Vibrio cholerae HC-49A2]
gi|417815469|ref|ZP_12462103.1| ribosome-binding factor A [Vibrio cholerae HCUF01]
gi|418331612|ref|ZP_12942554.1| ribosome-binding factor A [Vibrio cholerae HC-06A1]
gi|418336487|ref|ZP_12945386.1| ribosome-binding factor A [Vibrio cholerae HC-23A1]
gi|418342869|ref|ZP_12949665.1| ribosome-binding factor A [Vibrio cholerae HC-28A1]
gi|418348030|ref|ZP_12952766.1| ribosome-binding factor A [Vibrio cholerae HC-43A1]
gi|418354468|ref|ZP_12957191.1| ribosome-binding factor A [Vibrio cholerae HC-61A1]
gi|419825112|ref|ZP_14348618.1| ribosome-binding factor A [Vibrio cholerae CP1033(6)]
gi|419829190|ref|ZP_14352678.1| ribosome-binding factor A [Vibrio cholerae HC-1A2]
gi|419831986|ref|ZP_14355451.1| ribosome-binding factor A [Vibrio cholerae HC-61A2]
gi|419835564|ref|ZP_14359009.1| ribosome-binding factor A [Vibrio cholerae HC-46B1]
gi|421315781|ref|ZP_15766353.1| ribosome-binding factor A [Vibrio cholerae CP1032(5)]
gi|421319411|ref|ZP_15769970.1| ribosome-binding factor A [Vibrio cholerae CP1038(11)]
gi|421323458|ref|ZP_15773987.1| ribosome-binding factor A [Vibrio cholerae CP1041(14)]
gi|421327863|ref|ZP_15778379.1| ribosome-binding factor A [Vibrio cholerae CP1042(15)]
gi|421330870|ref|ZP_15781352.1| ribosome-binding factor A [Vibrio cholerae CP1046(19)]
gi|421334452|ref|ZP_15784921.1| ribosome-binding factor A [Vibrio cholerae CP1048(21)]
gi|421338350|ref|ZP_15788787.1| ribosome-binding factor A [Vibrio cholerae HC-20A2]
gi|421342024|ref|ZP_15792431.1| ribosome-binding factor A [Vibrio cholerae HC-43B1]
gi|421346599|ref|ZP_15796982.1| ribosome-binding factor A [Vibrio cholerae HC-46A1]
gi|421350473|ref|ZP_15800839.1| ribosome-binding factor A [Vibrio cholerae HE-25]
gi|421353452|ref|ZP_15803785.1| ribosome-binding factor A [Vibrio cholerae HE-45]
gi|422890684|ref|ZP_16933097.1| ribosome-binding factor A [Vibrio cholerae HC-40A1]
gi|422901552|ref|ZP_16936916.1| ribosome-binding factor A [Vibrio cholerae HC-48A1]
gi|422905770|ref|ZP_16940616.1| ribosome-binding factor A [Vibrio cholerae HC-70A1]
gi|422912368|ref|ZP_16946895.1| ribosome-binding factor A [Vibrio cholerae HFU-02]
gi|422916356|ref|ZP_16950694.1| ribosome-binding factor A [Vibrio cholerae HC-02A1]
gi|422921869|ref|ZP_16955074.1| ribosome-binding factor A [Vibrio cholerae BJG-01]
gi|422924850|ref|ZP_16957881.1| ribosome-binding factor A [Vibrio cholerae HC-38A1]
gi|423144171|ref|ZP_17131786.1| ribosome-binding factor A [Vibrio cholerae HC-19A1]
gi|423148875|ref|ZP_17136235.1| ribosome-binding factor A [Vibrio cholerae HC-21A1]
gi|423152666|ref|ZP_17139865.1| ribosome-binding factor A [Vibrio cholerae HC-22A1]
gi|423155448|ref|ZP_17142585.1| ribosome-binding factor A [Vibrio cholerae HC-32A1]
gi|423159311|ref|ZP_17146284.1| ribosome-binding factor A [Vibrio cholerae HC-33A2]
gi|423163996|ref|ZP_17150784.1| ribosome-binding factor A [Vibrio cholerae HC-48B2]
gi|423730122|ref|ZP_17703441.1| ribosome-binding factor A [Vibrio cholerae HC-17A1]
gi|423733927|ref|ZP_17707143.1| ribosome-binding factor A [Vibrio cholerae HC-41B1]
gi|423748286|ref|ZP_17711520.1| ribosome-binding factor A [Vibrio cholerae HC-50A2]
gi|423817267|ref|ZP_17715298.1| ribosome-binding factor A [Vibrio cholerae HC-55C2]
gi|423849302|ref|ZP_17719084.1| ribosome-binding factor A [Vibrio cholerae HC-59A1]
gi|423878956|ref|ZP_17722691.1| ribosome-binding factor A [Vibrio cholerae HC-60A1]
gi|423891843|ref|ZP_17725531.1| ribosome-binding factor A [Vibrio cholerae HC-62A1]
gi|423926617|ref|ZP_17730146.1| ribosome-binding factor A [Vibrio cholerae HC-77A1]
gi|423947602|ref|ZP_17733561.1| ribosome-binding factor A [Vibrio cholerae HE-40]
gi|423976872|ref|ZP_17737109.1| ribosome-binding factor A [Vibrio cholerae HE-46]
gi|423996778|ref|ZP_17740041.1| ribosome-binding factor A [Vibrio cholerae HC-02C1]
gi|424001174|ref|ZP_17744264.1| ribosome-binding factor A [Vibrio cholerae HC-17A2]
gi|424005332|ref|ZP_17748317.1| ribosome-binding factor A [Vibrio cholerae HC-37A1]
gi|424008212|ref|ZP_17751162.1| ribosome-binding factor A [Vibrio cholerae HC-44C1]
gi|424015480|ref|ZP_17755327.1| ribosome-binding factor A [Vibrio cholerae HC-55B2]
gi|424020591|ref|ZP_17760371.1| ribosome-binding factor A [Vibrio cholerae HC-59B1]
gi|424023341|ref|ZP_17763006.1| ribosome-binding factor A [Vibrio cholerae HC-62B1]
gi|424026144|ref|ZP_17765761.1| ribosome-binding factor A [Vibrio cholerae HC-69A1]
gi|424585549|ref|ZP_18025143.1| ribosome-binding factor A [Vibrio cholerae CP1030(3)]
gi|424589889|ref|ZP_18029336.1| ribosome-binding factor A [Vibrio cholerae CP1037(10)]
gi|424594166|ref|ZP_18033505.1| ribosome-binding factor A [Vibrio cholerae CP1040(13)]
gi|424598107|ref|ZP_18037305.1| ribosome-binding factor A [Vibrio Cholerae CP1044(17)]
gi|424600864|ref|ZP_18040021.1| ribosome-binding factor A [Vibrio cholerae CP1047(20)]
gi|424605759|ref|ZP_18044725.1| ribosome-binding factor A [Vibrio cholerae CP1050(23)]
gi|424609596|ref|ZP_18048455.1| ribosome-binding factor A [Vibrio cholerae HC-39A1]
gi|424612398|ref|ZP_18051206.1| ribosome-binding factor A [Vibrio cholerae HC-41A1]
gi|424616275|ref|ZP_18054967.1| ribosome-binding factor A [Vibrio cholerae HC-42A1]
gi|424621154|ref|ZP_18059683.1| ribosome-binding factor A [Vibrio cholerae HC-47A1]
gi|424623959|ref|ZP_18062436.1| ribosome-binding factor A [Vibrio cholerae HC-50A1]
gi|424628534|ref|ZP_18066840.1| ribosome-binding factor A [Vibrio cholerae HC-51A1]
gi|424632495|ref|ZP_18070611.1| ribosome-binding factor A [Vibrio cholerae HC-52A1]
gi|424635580|ref|ZP_18073601.1| ribosome-binding factor A [Vibrio cholerae HC-55A1]
gi|424639494|ref|ZP_18077390.1| ribosome-binding factor A [Vibrio cholerae HC-56A1]
gi|424644131|ref|ZP_18081886.1| ribosome-binding factor A [Vibrio cholerae HC-56A2]
gi|424647653|ref|ZP_18085330.1| ribosome-binding factor A [Vibrio cholerae HC-57A1]
gi|424651777|ref|ZP_18089302.1| ribosome-binding factor A [Vibrio cholerae HC-57A2]
gi|424655724|ref|ZP_18093027.1| ribosome-binding factor A [Vibrio cholerae HC-81A2]
gi|440708848|ref|ZP_20889508.1| ribosome-binding factor A [Vibrio cholerae 4260B]
gi|443502672|ref|ZP_21069662.1| ribosome-binding factor A [Vibrio cholerae HC-64A1]
gi|443506586|ref|ZP_21073377.1| ribosome-binding factor A [Vibrio cholerae HC-65A1]
gi|443510692|ref|ZP_21077357.1| ribosome-binding factor A [Vibrio cholerae HC-67A1]
gi|443514252|ref|ZP_21080792.1| ribosome-binding factor A [Vibrio cholerae HC-68A1]
gi|443518067|ref|ZP_21084485.1| ribosome-binding factor A [Vibrio cholerae HC-71A1]
gi|443522934|ref|ZP_21089175.1| ribosome-binding factor A [Vibrio cholerae HC-72A2]
gi|443528477|ref|ZP_21094511.1| ribosome-binding factor A [Vibrio cholerae HC-78A1]
gi|443530552|ref|ZP_21096568.1| ribosome-binding factor A [Vibrio cholerae HC-7A1]
gi|443534327|ref|ZP_21100240.1| ribosome-binding factor A [Vibrio cholerae HC-80A1]
gi|443537903|ref|ZP_21103760.1| ribosome-binding factor A [Vibrio cholerae HC-81A1]
gi|449054133|ref|ZP_21732801.1| Ribosome-binding factor A [Vibrio cholerae O1 str. Inaba G4222]
gi|20978661|sp|Q9KU79.2|RBFA_VIBCH RecName: Full=Ribosome-binding factor A
gi|172047750|sp|A5F927.2|RBFA_VIBC3 RecName: Full=Ribosome-binding factor A
gi|255738079|gb|EET93471.1| ribosome-binding factor A [Vibrio cholera CIRS 101]
gi|258582972|gb|EEW07787.1| ribosome-binding factor A [Vibrio mimicus VM603]
gi|262021677|gb|EEY40388.1| ribosome-binding factor A [Vibrio cholerae RC27]
gi|262030151|gb|EEY48796.1| ribosome-binding factor A [Vibrio cholerae INDRE 91/1]
gi|262034521|gb|EEY52863.1| ribosome-binding factor A [Vibrio cholerae CT 5369-93]
gi|327483445|gb|AEA77852.1| Ribosome-binding factor A [Vibrio cholerae LMA3984-4]
gi|340043455|gb|EGR04414.1| ribosome-binding factor A [Vibrio cholerae HCUF01]
gi|340043986|gb|EGR04943.1| ribosome-binding factor A [Vibrio cholerae HC-49A2]
gi|341625118|gb|EGS50587.1| ribosome-binding factor A [Vibrio cholerae HC-70A1]
gi|341626207|gb|EGS51609.1| ribosome-binding factor A [Vibrio cholerae HC-48A1]
gi|341626879|gb|EGS52222.1| ribosome-binding factor A [Vibrio cholerae HC-40A1]
gi|341640208|gb|EGS64799.1| ribosome-binding factor A [Vibrio cholerae HC-02A1]
gi|341640934|gb|EGS65509.1| ribosome-binding factor A [Vibrio cholerae HFU-02]
gi|341647486|gb|EGS71564.1| ribosome-binding factor A [Vibrio cholerae BJG-01]
gi|341648477|gb|EGS72537.1| ribosome-binding factor A [Vibrio cholerae HC-38A1]
gi|356420639|gb|EHH74158.1| ribosome-binding factor A [Vibrio cholerae HC-06A1]
gi|356421499|gb|EHH75000.1| ribosome-binding factor A [Vibrio cholerae HC-21A1]
gi|356426122|gb|EHH79456.1| ribosome-binding factor A [Vibrio cholerae HC-19A1]
gi|356433268|gb|EHH86461.1| ribosome-binding factor A [Vibrio cholerae HC-23A1]
gi|356434449|gb|EHH87628.1| ribosome-binding factor A [Vibrio cholerae HC-22A1]
gi|356437914|gb|EHH90985.1| ribosome-binding factor A [Vibrio cholerae HC-28A1]
gi|356443115|gb|EHH95947.1| ribosome-binding factor A [Vibrio cholerae HC-32A1]
gi|356448141|gb|EHI00926.1| ribosome-binding factor A [Vibrio cholerae HC-43A1]
gi|356450148|gb|EHI02880.1| ribosome-binding factor A [Vibrio cholerae HC-33A2]
gi|356453880|gb|EHI06538.1| ribosome-binding factor A [Vibrio cholerae HC-61A1]
gi|356456288|gb|EHI08896.1| ribosome-binding factor A [Vibrio cholerae HC-48B2]
gi|356645614|gb|AET25669.1| ribosome-binding factor A [Vibrio cholerae O1 str. 2010EL-1786]
gi|378794013|gb|AFC57484.1| ribosome-binding factor A [Vibrio cholerae IEC224]
gi|395922522|gb|EJH33338.1| ribosome-binding factor A [Vibrio cholerae CP1032(5)]
gi|395923303|gb|EJH34115.1| ribosome-binding factor A [Vibrio cholerae CP1041(14)]
gi|395925736|gb|EJH36533.1| ribosome-binding factor A [Vibrio cholerae CP1038(11)]
gi|395931597|gb|EJH42342.1| ribosome-binding factor A [Vibrio cholerae CP1042(15)]
gi|395934723|gb|EJH45461.1| ribosome-binding factor A [Vibrio cholerae CP1046(19)]
gi|395937561|gb|EJH48275.1| ribosome-binding factor A [Vibrio cholerae CP1048(21)]
gi|395945302|gb|EJH55971.1| ribosome-binding factor A [Vibrio cholerae HC-20A2]
gi|395945527|gb|EJH56192.1| ribosome-binding factor A [Vibrio cholerae HC-43B1]
gi|395946747|gb|EJH57407.1| ribosome-binding factor A [Vibrio cholerae HC-46A1]
gi|395954595|gb|EJH65205.1| ribosome-binding factor A [Vibrio cholerae HE-25]
gi|395954799|gb|EJH65408.1| ribosome-binding factor A [Vibrio cholerae HE-45]
gi|395962633|gb|EJH72927.1| ribosome-binding factor A [Vibrio cholerae HC-56A2]
gi|395963760|gb|EJH74017.1| ribosome-binding factor A [Vibrio cholerae HC-57A2]
gi|395966581|gb|EJH76699.1| ribosome-binding factor A [Vibrio cholerae HC-42A1]
gi|395974816|gb|EJH84330.1| ribosome-binding factor A [Vibrio cholerae HC-47A1]
gi|395977395|gb|EJH86805.1| ribosome-binding factor A [Vibrio cholerae CP1030(3)]
gi|395979084|gb|EJH88448.1| ribosome-binding factor A [Vibrio cholerae CP1047(20)]
gi|408009682|gb|EKG47582.1| ribosome-binding factor A [Vibrio cholerae HC-39A1]
gi|408015765|gb|EKG53338.1| ribosome-binding factor A [Vibrio cholerae HC-50A1]
gi|408016540|gb|EKG54084.1| ribosome-binding factor A [Vibrio cholerae HC-41A1]
gi|408020697|gb|EKG57984.1| ribosome-binding factor A [Vibrio cholerae HC-52A1]
gi|408026696|gb|EKG63691.1| ribosome-binding factor A [Vibrio cholerae HC-56A1]
gi|408027131|gb|EKG64113.1| ribosome-binding factor A [Vibrio cholerae HC-55A1]
gi|408036069|gb|EKG72516.1| ribosome-binding factor A [Vibrio cholerae CP1037(10)]
gi|408036710|gb|EKG73131.1| ribosome-binding factor A [Vibrio cholerae HC-57A1]
gi|408037144|gb|EKG73550.1| ribosome-binding factor A [Vibrio cholerae CP1040(13)]
gi|408044699|gb|EKG80595.1| ribosome-binding factor A [Vibrio Cholerae CP1044(17)]
gi|408046656|gb|EKG82332.1| ribosome-binding factor A [Vibrio cholerae CP1050(23)]
gi|408057156|gb|EKG92020.1| ribosome-binding factor A [Vibrio cholerae HC-81A2]
gi|408058740|gb|EKG93526.1| ribosome-binding factor A [Vibrio cholerae HC-51A1]
gi|408611383|gb|EKK84744.1| ribosome-binding factor A [Vibrio cholerae CP1033(6)]
gi|408621824|gb|EKK94816.1| ribosome-binding factor A [Vibrio cholerae HC-1A2]
gi|408627333|gb|EKL00149.1| ribosome-binding factor A [Vibrio cholerae HC-17A1]
gi|408631697|gb|EKL04225.1| ribosome-binding factor A [Vibrio cholerae HC-41B1]
gi|408636490|gb|EKL08627.1| ribosome-binding factor A [Vibrio cholerae HC-55C2]
gi|408640850|gb|EKL12633.1| ribosome-binding factor A [Vibrio cholerae HC-50A2]
gi|408643664|gb|EKL15381.1| ribosome-binding factor A [Vibrio cholerae HC-60A1]
gi|408644701|gb|EKL16375.1| ribosome-binding factor A [Vibrio cholerae HC-59A1]
gi|408651887|gb|EKL23126.1| ribosome-binding factor A [Vibrio cholerae HC-61A2]
gi|408658686|gb|EKL29752.1| ribosome-binding factor A [Vibrio cholerae HC-77A1]
gi|408659347|gb|EKL30398.1| ribosome-binding factor A [Vibrio cholerae HC-62A1]
gi|408661659|gb|EKL32643.1| ribosome-binding factor A [Vibrio cholerae HE-40]
gi|408666086|gb|EKL36888.1| ribosome-binding factor A [Vibrio cholerae HE-46]
gi|408848347|gb|EKL88396.1| ribosome-binding factor A [Vibrio cholerae HC-37A1]
gi|408849172|gb|EKL89202.1| ribosome-binding factor A [Vibrio cholerae HC-17A2]
gi|408854156|gb|EKL93920.1| ribosome-binding factor A [Vibrio cholerae HC-02C1]
gi|408858977|gb|EKL98647.1| ribosome-binding factor A [Vibrio cholerae HC-46B1]
gi|408861825|gb|EKM01392.1| ribosome-binding factor A [Vibrio cholerae HC-55B2]
gi|408866082|gb|EKM05471.1| ribosome-binding factor A [Vibrio cholerae HC-44C1]
gi|408866456|gb|EKM05836.1| ribosome-binding factor A [Vibrio cholerae HC-59B1]
gi|408873450|gb|EKM12647.1| ribosome-binding factor A [Vibrio cholerae HC-62B1]
gi|408881303|gb|EKM20207.1| ribosome-binding factor A [Vibrio cholerae HC-69A1]
gi|439975589|gb|ELP51701.1| ribosome-binding factor A [Vibrio cholerae 4260B]
gi|443433063|gb|ELS75583.1| ribosome-binding factor A [Vibrio cholerae HC-64A1]
gi|443436852|gb|ELS82968.1| ribosome-binding factor A [Vibrio cholerae HC-65A1]
gi|443440414|gb|ELS90102.1| ribosome-binding factor A [Vibrio cholerae HC-67A1]
gi|443444509|gb|ELS97782.1| ribosome-binding factor A [Vibrio cholerae HC-68A1]
gi|443448345|gb|ELT04979.1| ribosome-binding factor A [Vibrio cholerae HC-71A1]
gi|443451120|gb|ELT11383.1| ribosome-binding factor A [Vibrio cholerae HC-72A2]
gi|443453051|gb|ELT16884.1| ribosome-binding factor A [Vibrio cholerae HC-78A1]
gi|443458753|gb|ELT26148.1| ribosome-binding factor A [Vibrio cholerae HC-7A1]
gi|443462485|gb|ELT33523.1| ribosome-binding factor A [Vibrio cholerae HC-80A1]
gi|443466728|gb|ELT41385.1| ribosome-binding factor A [Vibrio cholerae HC-81A1]
gi|448266384|gb|EMB03611.1| Ribosome-binding factor A [Vibrio cholerae O1 str. Inaba G4222]
Length = 132
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 66/115 (57%), Gaps = 15/115 (13%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + VA+Q+Q+EL+ M+L +V ++ LG + TISDVEVS DL KV+
Sbjct: 7 RTQRVAQQLQKELA-MILQREV------RDSRLG-------MVTISDVEVSRDLAYAKVF 52
Query: 129 VSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
V+ ++ E +A L+ +R LG++++LRLTPEIRF D + G R+
Sbjct: 53 VTFLCIGEQTPESCLAALREHEVQIRMMLGKQIRLRLTPEIRFYYDNTLVEGMRM 107
>gi|359442876|ref|ZP_09232732.1| ribosome-binding factor A [Pseudoalteromonas sp. BSi20429]
gi|392535261|ref|ZP_10282398.1| ribosome-binding factor A, role in processing of 16S rRNA
[Pseudoalteromonas arctica A 37-1-2]
gi|358035236|dbj|GAA68981.1| ribosome-binding factor A [Pseudoalteromonas sp. BSi20429]
Length = 161
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 82/156 (52%), Gaps = 22/156 (14%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R VA+QIQ+E++ +L + + + LG + T+S VEVS DL K++
Sbjct: 6 RTDRVAQQIQKEIAVILQRE-------IKDPRLG-------MVTVSAVEVSRDLSYAKIF 51
Query: 129 VSVFG---DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
++VF +D K+ A L Y+RS LG+R++ R+ PE++F+ D S G R+ +
Sbjct: 52 ITVFNTQDEDAAKQSAKV-LNEATGYIRSLLGKRIRARIMPELKFVVDNSLMEGMRISNL 110
Query: 186 LDRIKAEKEAAK-SKNKEQFESPDLPEDERDWEGDD 220
+D I E A ++ E ++ D+ + E EG D
Sbjct: 111 VDSIIREDNAKHVDEDVESVDAADVSDSE---EGTD 143
>gi|339627981|ref|YP_004719624.1| ribosome-binding factor A [Sulfobacillus acidophilus TPY]
gi|339285770|gb|AEJ39881.1| ribosome-binding factor A [Sulfobacillus acidophilus TPY]
Length = 109
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 58/100 (58%), Gaps = 14/100 (14%)
Query: 77 IQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVFGDDR 136
+QREL +MLLT+ + + +G +I+ VEV+ DLQ K++VS+ G
Sbjct: 1 MQRELGEMLLTE-------IKDPRVG-------FVSITHVEVTRDLQQAKIFVSIMGTPE 46
Query: 137 GKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESF 176
+ ++ GLKS +++R ++ RR+ LR+ PE+ FI D S
Sbjct: 47 EVKASLEGLKSAQRFLRGEVSRRLGLRMAPELVFIVDSSI 86
>gi|261212245|ref|ZP_05926531.1| ribosome-binding factor A [Vibrio sp. RC341]
gi|262401658|ref|ZP_06078224.1| ribosome-binding factor A [Vibrio sp. RC586]
gi|260838853|gb|EEX65504.1| ribosome-binding factor A [Vibrio sp. RC341]
gi|262352075|gb|EEZ01205.1| ribosome-binding factor A [Vibrio sp. RC586]
Length = 132
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 66/115 (57%), Gaps = 15/115 (13%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + VA+Q+Q+EL+ M+L +V ++ LG + TISDVEVS DL KV+
Sbjct: 7 RTQRVAQQLQKELA-MILQREV------RDSRLG-------MVTISDVEVSRDLAYAKVF 52
Query: 129 VSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
V+ ++ E +A L+ +R LG++++LRLTPEIRF D + G R+
Sbjct: 53 VTFLCIGEQTPESCLAALREHEVQIRMMLGKQIRLRLTPEIRFYYDNTLVEGMRM 107
>gi|260775408|ref|ZP_05884305.1| ribosome-binding factor A [Vibrio coralliilyticus ATCC BAA-450]
gi|260608589|gb|EEX34754.1| ribosome-binding factor A [Vibrio coralliilyticus ATCC BAA-450]
Length = 137
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 78/148 (52%), Gaps = 20/148 (13%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + V++Q+Q+EL+ M+L +V ++ LG + TISDVEVS DL KV+
Sbjct: 7 RTQRVSQQLQKELA-MILQREV------RDSRLG-------MVTISDVEVSRDLAYAKVF 52
Query: 129 VSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
V+ ++ E + L+ ++R LG+R++LRLTPEIRF D + G R+ ++
Sbjct: 53 VTFLCVGEQTPESCLKALREHEVHIRMMLGKRIRLRLTPEIRFEYDNTLVEGMRMSNLVS 112
Query: 188 RIKAEKEAAKSKNKEQFESPDLPEDERD 215
+ +E K K+Q D E D
Sbjct: 113 EVVSE-----DKRKQQDAGRDGENSEED 135
>gi|339498329|ref|ZP_08659305.1| ribosome-binding factor A [Leuconostoc pseudomesenteroides KCTC
3652]
Length = 117
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 68/125 (54%), Gaps = 25/125 (20%)
Query: 64 MANPRRVKMVAKQIQRELSDMLL---TDKVLQFAVLPEAALGADRYLSSLTTISDVEVSA 120
MANP+R +A+++QR+++D+LL D +Q T++ VE++
Sbjct: 1 MANPQRAGRLAQEVQRDVTDLLLKRINDPRVQD-----------------VTVTSVELTG 43
Query: 121 DLQVVKVYVSVFGD---DRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFE 177
DLQ+ +Y S+ D D K A AGL++ + +R +LG R+ + PE++F+ D S +
Sbjct: 44 DLQIATIYYSILSDLASDAKK--AQAGLEAASGLIRKELGARLTVYKIPELKFVRDNSVQ 101
Query: 178 RGSRV 182
G+ +
Sbjct: 102 YGNHI 106
>gi|71728808|gb|EAO30949.1| Ribosome-binding factor A [Xylella fastidiosa Ann-1]
Length = 125
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 69/119 (57%), Gaps = 15/119 (12%)
Query: 68 RRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKV 127
+R + V+ QI+R+L +Q AV D L S++ +SDVEV+ D+ KV
Sbjct: 7 QRTERVSVQIRRDLG------AFVQAAV-------RDHGLPSMS-VSDVEVTRDMAHAKV 52
Query: 128 YVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
+V+ +R E A+AGLK+ A+ +R QL + M+LR PE+ F D+S +RG R+ +L
Sbjct: 53 FVTALQAERSFE-AVAGLKALARELRMQLAQTMRLRFVPELHFHYDDSLDRGERINTLL 110
>gi|425736865|ref|ZP_18855141.1| ribosome-binding factor A [Staphylococcus massiliensis S46]
gi|425483337|gb|EKU50489.1| ribosome-binding factor A [Staphylococcus massiliensis S46]
Length = 115
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 68/119 (57%), Gaps = 15/119 (12%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
M+N R + V +Q+ +EL D++ + + + +G TI+DV V++DL
Sbjct: 1 MSNMRSER-VGQQMMQELMDIINNE-------VKDPRIG-------FLTITDVRVTSDLS 45
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
KV+++V G ++ +E GL+ +++S++G R+ LR+ PE+ F DES E G+++
Sbjct: 46 QAKVFLTVLGSEKEREDTFKGLEKAKGFLKSEIGNRLSLRIVPELEFEYDESIEYGNKI 104
>gi|188577679|ref|YP_001914608.1| ribosome-binding factor A [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188522131|gb|ACD60076.1| ribosome-binding factor A [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 115
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 111 TTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRF 170
++SDVE+S DL KV+V+ +R E A+ GLK A +R+QL R MKLR PE+ F
Sbjct: 21 VSVSDVEISRDLAHAKVFVTALQQERSAE-AVKGLKDIAGQLRTQLARAMKLRHVPELHF 79
Query: 171 IEDESFERGSRVIAIL 186
D+S +RG R+ +L
Sbjct: 80 HYDDSVDRGERIDNLL 95
>gi|121587846|ref|ZP_01677603.1| ribosome-binding factor A [Vibrio cholerae 2740-80]
gi|121728384|ref|ZP_01681412.1| ribosome-binding factor A [Vibrio cholerae V52]
gi|147673152|ref|YP_001216138.1| ribosome-binding factor A [Vibrio cholerae O395]
gi|153215853|ref|ZP_01950185.1| ribosome-binding factor A [Vibrio cholerae 1587]
gi|153802002|ref|ZP_01956588.1| ribosome-binding factor A [Vibrio cholerae MZO-3]
gi|153818692|ref|ZP_01971359.1| ribosome-binding factor A [Vibrio cholerae NCTC 8457]
gi|153822541|ref|ZP_01975208.1| ribosome-binding factor A [Vibrio cholerae B33]
gi|153826508|ref|ZP_01979175.1| ribosome-binding factor A [Vibrio cholerae MZO-2]
gi|153829183|ref|ZP_01981850.1| ribosome-binding factor A [Vibrio cholerae 623-39]
gi|227080825|ref|YP_002809376.1| ribosome-binding factor A [Vibrio cholerae M66-2]
gi|227117019|ref|YP_002818915.1| ribosome-binding factor A [Vibrio cholerae O395]
gi|229505734|ref|ZP_04395244.1| ribosome-binding factor A [Vibrio cholerae BX 330286]
gi|229509233|ref|ZP_04398718.1| ribosome-binding factor A [Vibrio cholerae B33]
gi|229512906|ref|ZP_04402373.1| ribosome-binding factor A [Vibrio cholerae TMA 21]
gi|229530449|ref|ZP_04419837.1| ribosome-binding factor A [Vibrio cholerae 12129(1)]
gi|229608845|ref|YP_002879493.1| ribosome-binding factor A [Vibrio cholerae MJ-1236]
gi|254226549|ref|ZP_04920132.1| ribosome-binding factor A [Vibrio cholerae V51]
gi|254291883|ref|ZP_04962665.1| ribosome-binding factor A [Vibrio cholerae AM-19226]
gi|254850878|ref|ZP_05240228.1| ribosome-binding factor A [Vibrio cholerae MO10]
gi|297580770|ref|ZP_06942696.1| ribosome-binding factor A [Vibrio cholerae RC385]
gi|298500760|ref|ZP_07010563.1| ribosome-binding factor A [Vibrio cholerae MAK 757]
gi|9655080|gb|AAF93810.1| ribosome-binding factor A [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121547882|gb|EAX57966.1| ribosome-binding factor A [Vibrio cholerae 2740-80]
gi|121629318|gb|EAX61750.1| ribosome-binding factor A [Vibrio cholerae V52]
gi|124114570|gb|EAY33390.1| ribosome-binding factor A [Vibrio cholerae 1587]
gi|124122461|gb|EAY41204.1| ribosome-binding factor A [Vibrio cholerae MZO-3]
gi|125620953|gb|EAZ49304.1| ribosome-binding factor A [Vibrio cholerae V51]
gi|126510772|gb|EAZ73366.1| ribosome-binding factor A [Vibrio cholerae NCTC 8457]
gi|126519959|gb|EAZ77182.1| ribosome-binding factor A [Vibrio cholerae B33]
gi|146315035|gb|ABQ19574.1| ribosome-binding factor A [Vibrio cholerae O395]
gi|148875372|gb|EDL73507.1| ribosome-binding factor A [Vibrio cholerae 623-39]
gi|149739688|gb|EDM53895.1| ribosome-binding factor A [Vibrio cholerae MZO-2]
gi|150422169|gb|EDN14134.1| ribosome-binding factor A [Vibrio cholerae AM-19226]
gi|227008713|gb|ACP04925.1| ribosome-binding factor A [Vibrio cholerae M66-2]
gi|227012469|gb|ACP08679.1| ribosome-binding factor A [Vibrio cholerae O395]
gi|229332222|gb|EEN97710.1| ribosome-binding factor A [Vibrio cholerae 12129(1)]
gi|229350155|gb|EEO15108.1| ribosome-binding factor A [Vibrio cholerae TMA 21]
gi|229353805|gb|EEO18741.1| ribosome-binding factor A [Vibrio cholerae B33]
gi|229357957|gb|EEO22874.1| ribosome-binding factor A [Vibrio cholerae BX 330286]
gi|229371500|gb|ACQ61923.1| ribosome-binding factor A [Vibrio cholerae MJ-1236]
gi|254846583|gb|EET24997.1| ribosome-binding factor A [Vibrio cholerae MO10]
gi|297535186|gb|EFH74021.1| ribosome-binding factor A [Vibrio cholerae RC385]
gi|297540541|gb|EFH76599.1| ribosome-binding factor A [Vibrio cholerae MAK 757]
Length = 136
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 66/115 (57%), Gaps = 15/115 (13%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + VA+Q+Q+EL+ M+L +V ++ LG + TISDVEVS DL KV+
Sbjct: 11 RTQRVAQQLQKELA-MILQREV------RDSRLG-------MVTISDVEVSRDLAYAKVF 56
Query: 129 VSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
V+ ++ E +A L+ +R LG++++LRLTPEIRF D + G R+
Sbjct: 57 VTFLCIGEQTPESCLAALREHEVQIRMMLGKQIRLRLTPEIRFYYDNTLVEGMRM 111
>gi|320537768|ref|ZP_08037691.1| ribosome-binding factor A [Treponema phagedenis F0421]
gi|320145391|gb|EFW37084.1| ribosome-binding factor A [Treponema phagedenis F0421]
Length = 125
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 67/121 (55%), Gaps = 12/121 (9%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R+ + +QI+ E+S M+ + + D +S+ +I+ V+VSADL KVY
Sbjct: 5 RLTKLGEQIREEISKMISSGTI------------KDPRVSNFLSINRVDVSADLAYAKVY 52
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VS F D + ++GL++ A ++R+ L +++ + P++ FI DES + G ++ LD
Sbjct: 53 VSSFMDSHKTKQGVSGLENAAGFIRTTLAKKLHVHKFPQLSFIYDESIKEGFDMVKKLDS 112
Query: 189 I 189
+
Sbjct: 113 M 113
>gi|389704139|ref|ZP_10185853.1| ribosome-binding factor A [Acinetobacter sp. HA]
gi|388611222|gb|EIM40328.1| ribosome-binding factor A [Acinetobacter sp. HA]
Length = 134
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 80/163 (49%), Gaps = 38/163 (23%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA +R+K +A +QRELS+++ + D L L TIS V+VS DL
Sbjct: 1 MAGSQRLKRMADTVQRELSELIRQEL-------------KDPRLGGLVTISAVKVSPDLG 47
Query: 124 VVKVYVSVFGDDRGKEVAIAG-------LKSKAKYVRSQLGRRMKLRLTPEIRFIEDESF 176
+VYV+V G + G E + A L + ++R +L RR+K R+TP +RF D++
Sbjct: 48 YAEVYVTVMGRELGDEQSEAANKETLDVLNKASGFLRHELSRRIKTRITPRLRFHYDKTN 107
Query: 177 ERGSRVIAILDRIKAEKEAAKSKNKEQFESPDLP--EDERDWE 217
G+ + ++ EA K DLP ED++D E
Sbjct: 108 AYGNYMFGLI------AEAVK----------DLPPAEDKKDEE 134
>gi|229520935|ref|ZP_04410357.1| ribosome-binding factor A [Vibrio cholerae TM 11079-80]
gi|229342168|gb|EEO07164.1| ribosome-binding factor A [Vibrio cholerae TM 11079-80]
Length = 136
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 66/115 (57%), Gaps = 15/115 (13%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + VA+Q+Q+EL+ M+L +V ++ LG + TISDVEVS DL KV+
Sbjct: 11 RTQRVAQQLQKELA-MILQREV------RDSRLG-------MVTISDVEVSRDLAYAKVF 56
Query: 129 VSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
V+ ++ E +A L+ +R LG++++LRLTPEIRF D + G R+
Sbjct: 57 VTFLCIGEQTPESCLAALREHEVQIRMMLGKQIRLRLTPEIRFYYDNTLVEGMRM 111
>gi|420185426|ref|ZP_14691518.1| ribosome-binding factor A [Staphylococcus epidermidis NIHLM040]
gi|394254412|gb|EJD99381.1| ribosome-binding factor A [Staphylococcus epidermidis NIHLM040]
Length = 116
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 66/117 (56%), Gaps = 14/117 (11%)
Query: 66 NPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
N R + V +Q+++E+ D ++ +KV + +G TI+DVE++ DL
Sbjct: 2 NNIRAERVGEQMKQEIMD-IVNNKV------KDPRVG-------FLTITDVELTNDLSQA 47
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
KVY++V G+D+ + L +++S+L RM+LR+ PE+ F DES E G+++
Sbjct: 48 KVYLTVLGNDKEVDNTFKALHKATGFIKSELSSRMRLRIIPELTFEYDESIEYGNKI 104
>gi|260424716|ref|ZP_05778979.1| ribosome-binding factor A [Dialister invisus DSM 15470]
gi|260402930|gb|EEW96477.1| ribosome-binding factor A [Dialister invisus DSM 15470]
Length = 119
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 69/124 (55%), Gaps = 14/124 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
RV+ + + I++E+ +MLL + L + LG T++ V+++ DL+ VY
Sbjct: 5 RVRKMQEFIKQEVGNMLLRE-------LKDPRLG-------FVTVTGVKLTGDLREATVY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VS+FG + ++ ++ L ++R +LG R+K+ TPEI F ED+S + G + +L +
Sbjct: 51 VSLFGQEEERKESLMVLNKSKGFIRKELGTRLKVYYTPEISFEEDKSLDYGMHIEGLLKK 110
Query: 189 IKAE 192
I E
Sbjct: 111 IHEE 114
>gi|223984476|ref|ZP_03634609.1| hypothetical protein HOLDEFILI_01903 [Holdemania filiformis DSM
12042]
gi|223963547|gb|EEF67926.1| hypothetical protein HOLDEFILI_01903 [Holdemania filiformis DSM
12042]
Length = 114
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 66/117 (56%), Gaps = 10/117 (8%)
Query: 78 QRELSDMLLTD--KVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVFGDD 135
Q ++ ++L D ++QF+ L + ++G TI+DV+V+ D +YVS G +
Sbjct: 5 QERVAQIILKDVTDIIQFS-LKDPSVG-------FVTITDVQVTNDYSYATIYVSFLGKE 56
Query: 136 RGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRIKAE 192
K+ + L ++RS+LG+R+ +R P++ F D+S E+G R+ +I+ +I E
Sbjct: 57 ERKQAGLKALNRAKGFIRSELGKRLSIRKVPDLIFKLDDSLEKGERIDSIISQINHE 113
>gi|410658710|ref|YP_006911081.1| Ribosome-binding factor A [Dehalobacter sp. DCA]
gi|410661698|ref|YP_006914069.1| Ribosome-binding factor A [Dehalobacter sp. CF]
gi|409021065|gb|AFV03096.1| Ribosome-binding factor A [Dehalobacter sp. DCA]
gi|409024054|gb|AFV06084.1| Ribosome-binding factor A [Dehalobacter sp. CF]
Length = 124
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 76/139 (54%), Gaps = 15/139 (10%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA R ++ A+ I+ E++ M+ D + + LG T++DVEV+ DL+
Sbjct: 1 MAKHRAFRL-AESIKAEVAQMIRED-------IKDPRLG-------FVTVTDVEVADDLR 45
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VSV G + + ++ L + Y+RS+LG+ + LR PEI F D+S E G+ +
Sbjct: 46 HAKIFVSVLGTEEEMKSSLDVLNKASGYLRSELGKIISLRYFPEITFKYDQSIEHGAHIS 105
Query: 184 AILDRIKAEKEAAKSKNKE 202
+L + A+ E++ ++ E
Sbjct: 106 KLLREVGAKGESSDGQDDE 124
>gi|332532412|ref|ZP_08408290.1| ribosome-binding factor A [Pseudoalteromonas haloplanktis ANT/505]
gi|332038055|gb|EGI74502.1| ribosome-binding factor A [Pseudoalteromonas haloplanktis ANT/505]
Length = 160
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 70/130 (53%), Gaps = 18/130 (13%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R VA+QIQ+E++ +L + + + LG + T+S VEVS DL K++
Sbjct: 6 RTDRVAQQIQKEIAVILQRE-------IKDPRLG-------MVTVSAVEVSRDLSYAKIF 51
Query: 129 VSVFG---DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
++VF +D K+ A L Y+RS LG+R++ R+ PE++F+ D S G R+ +
Sbjct: 52 ITVFNTQDEDAAKQSAKV-LNEATGYIRSLLGKRIRARIMPELKFVVDNSLMEGMRISNL 110
Query: 186 LDRIKAEKEA 195
+D I E A
Sbjct: 111 VDSIIREDNA 120
>gi|374307620|ref|YP_005054051.1| ribosome-binding factor A [Filifactor alocis ATCC 35896]
gi|291166368|gb|EFE28414.1| ribosome-binding factor A [Filifactor alocis ATCC 35896]
Length = 121
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 72/128 (56%), Gaps = 14/128 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + ++++I++ + +MLL ++ + R L +++ VEV DL+ +Y
Sbjct: 5 RTRRISEEIRKVVGNMLLEGEIKDTKI---------RNSKGLISVTSVEVVRDLKYAYIY 55
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERG---SRVIAI 185
+SV GD+ E + GLK + YVR ++GR++ LR TPEI F D S E G S++I+
Sbjct: 56 ISVLGDN--PETILDGLKRASGYVRKEVGRQVDLRYTPEIIFRLDHSIENGVEMSKMISE 113
Query: 186 LDRIKAEK 193
L++ E+
Sbjct: 114 LNQNSTEE 121
>gi|373950569|ref|ZP_09610530.1| Ribosome-binding factor A [Shewanella baltica OS183]
gi|386323594|ref|YP_006019711.1| Ribosome-binding factor A [Shewanella baltica BA175]
gi|333817739|gb|AEG10405.1| Ribosome-binding factor A [Shewanella baltica BA175]
gi|373887169|gb|EHQ16061.1| Ribosome-binding factor A [Shewanella baltica OS183]
Length = 152
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 8/119 (6%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGK-EVAIAGLKSKAKYVRSQLGRRMKLRLTPE 167
T++DV+VS DL KV+V+ F +D + + L S A Y+R+ + RMKLR+ PE
Sbjct: 33 GFVTVNDVDVSRDLSYAKVFVTFFEEDNAVVQEKLNALISAAPYIRTLVAGRMKLRVMPE 92
Query: 168 IRFIEDESFERGSRVIAILDRIKAEKEAAKSKNKEQFESPDLP-EDE--RDWEGDDPDE 223
+RFI D S G R+ ++ ++ + +A ++QF S D EDE D DD DE
Sbjct: 93 LRFIYDSSLVEGMRMSNLVSQVINQDKA----KQQQFGSEDASVEDEVLGDDVADDADE 147
>gi|289676026|ref|ZP_06496916.1| ribosome-binding factor A, partial [Pseudomonas syringae pv.
syringae FF5]
Length = 117
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 69/122 (56%), Gaps = 16/122 (13%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + +G L TI+ V+VS D+ K++
Sbjct: 7 RTQRIGDQMQRELAQLIRRE-------IKDPRVG-------LVTITAVDVSRDVGHAKIF 52
Query: 129 VSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G D +E+A I L + A ++R QL R MKLR P++ F DES RG+ + A++
Sbjct: 53 MTVMGQDSAEEIAQTIKVLNAAAGFLRMQLAREMKLRSVPQLHFHYDESVVRGAHLSALI 112
Query: 187 DR 188
+R
Sbjct: 113 ER 114
>gi|323495470|ref|ZP_08100545.1| ribosome-binding factor A [Vibrio sinaloensis DSM 21326]
gi|323319467|gb|EGA72403.1| ribosome-binding factor A [Vibrio sinaloensis DSM 21326]
Length = 135
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 71/125 (56%), Gaps = 15/125 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + VA+Q+Q+EL+ M+L +V ++ LG + TISDVEVS DL KV+
Sbjct: 7 RTQRVAQQLQKELA-MILQREV------RDSRLG-------MVTISDVEVSRDLAYAKVF 52
Query: 129 VSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
V+ ++ E + L+ ++R LG+R++LRLTPE+RF D + G R+ ++
Sbjct: 53 VTFLCVGEQTPESCLEALREHEVHIRMMLGKRIRLRLTPEVRFHYDNTLVEGMRMSNLVS 112
Query: 188 RIKAE 192
+ +E
Sbjct: 113 EVVSE 117
>gi|359452959|ref|ZP_09242290.1| ribosome-binding factor A [Pseudoalteromonas sp. BSi20495]
gi|414072334|ref|ZP_11408280.1| ribosome-binding factor A [Pseudoalteromonas sp. Bsw20308]
gi|358049951|dbj|GAA78539.1| ribosome-binding factor A [Pseudoalteromonas sp. BSi20495]
gi|410805246|gb|EKS11266.1| ribosome-binding factor A [Pseudoalteromonas sp. Bsw20308]
Length = 161
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 75/146 (51%), Gaps = 20/146 (13%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R VA+QIQ+E++ +L + + + LG + T+S VEVS DL K++
Sbjct: 6 RTDRVAQQIQKEIAVILQRE-------IKDPRLG-------MVTVSAVEVSRDLSYAKIF 51
Query: 129 VSVFG---DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
++VF +D K+ A L Y+RS LG+R++ R+ PE++F+ D S G R+ +
Sbjct: 52 ITVFNTQDEDAAKQSAKV-LNEATGYIRSLLGKRIRARIMPELKFVVDNSLMEGMRISNL 110
Query: 186 LDRIKAEKEAAKSKNKEQFESPDLPE 211
+D I E A E ES D E
Sbjct: 111 VDSIIREDNAKHV--DEDVESVDADE 134
>gi|380513483|ref|ZP_09856890.1| ribosome-binding factor A [Xanthomonas sacchari NCPPB 4393]
Length = 137
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 112 TISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFI 171
++SDVEV+ DL KV+V+ +R E A+ GLK A +RS+L R MKLR PE+ F
Sbjct: 37 SVSDVEVTRDLAHAKVFVTALMQERSAE-AVKGLKELAPQLRSELARAMKLRHVPELHFH 95
Query: 172 EDESFERGSRVIAIL 186
D+S +RG R+ +L
Sbjct: 96 YDDSVDRGERIDNLL 110
>gi|310658993|ref|YP_003936714.1| 30s ribosome binding factor [[Clostridium] sticklandii]
gi|308825771|emb|CBH21809.1| 30s ribosome binding factor [[Clostridium] sticklandii]
Length = 120
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 70/124 (56%), Gaps = 11/124 (8%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + ++I++ ++++L ++ ++ SL +I+ V+V DL+ +Y
Sbjct: 5 RTRRIGEEIKKTITELLRDQRIKDIRIIDS---------RSLISITTVDVVRDLKYAYIY 55
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+SV G+D K + G KS + ++R +LG+ +KLR TPE+ F D+S ERG + +++
Sbjct: 56 ISVLGNDSDK--VLEGFKSASGFIRKELGKDIKLRYTPELVFKIDDSIERGVNMSKLIND 113
Query: 189 IKAE 192
+ E
Sbjct: 114 LNIE 117
>gi|336125016|ref|YP_004567064.1| ribosome-binding factor A [Vibrio anguillarum 775]
gi|335342739|gb|AEH34022.1| Ribosome-binding factor A [Vibrio anguillarum 775]
Length = 142
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 67/115 (58%), Gaps = 15/115 (13%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + V++Q+Q+EL+ M++ +V ++ LG + TIS+VEVS DL KV+
Sbjct: 11 RTQRVSQQLQKELA-MIIQREV------RDSRLG-------MVTISEVEVSRDLAYAKVF 56
Query: 129 VSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
V+ ++ E +A LK ++R LG+R++LRLTPEIRF D + G R+
Sbjct: 57 VTFLCVGEQTPESCLAALKEHEVHIRMMLGKRIRLRLTPEIRFTYDNTLVEGMRM 111
>gi|315924371|ref|ZP_07920593.1| ribosome-binding factor A [Pseudoramibacter alactolyticus ATCC
23263]
gi|315622250|gb|EFV02209.1| ribosome-binding factor A [Pseudoramibacter alactolyticus ATCC
23263]
Length = 121
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 69/127 (54%), Gaps = 15/127 (11%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLT-TISDVEVSADL 122
MA+ R+ K+ A QIQRELS +++ K D+ L + T +I+ V+ + DL
Sbjct: 1 MASHRKEKIDA-QIQRELS-LIIRQKT------------KDKRLHNNTLSITGVKATPDL 46
Query: 123 QVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
+V VY+SV G + + + LK ++RS LG+ MK + PE+ F DES G +
Sbjct: 47 KVATVYISVLGSEEDAQGVMEALKKAKGFLRSSLGKIMKTHMIPELHFKRDESVAYGMHI 106
Query: 183 IAILDRI 189
AIL+ +
Sbjct: 107 DAILNEL 113
>gi|358013182|ref|ZP_09144992.1| ribosome-binding factor A [Acinetobacter sp. P8-3-8]
Length = 135
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 70/130 (53%), Gaps = 20/130 (15%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA +R+K +A +QRELS+++ + L + LG L TIS V+VS DL
Sbjct: 1 MAGSQRLKRMADTVQRELSELIRQE-------LKDPRLGG------LVTISAVKVSPDLG 47
Query: 124 VVKVYVSVFGDDRGKEVAIAG-------LKSKAKYVRSQLGRRMKLRLTPEIRFIEDESF 176
+VYV+V G + G E + A L + ++R +L RR+K R+TP +RF D++
Sbjct: 48 YAEVYVTVMGRELGDEQSEAANKETLDVLNKASGFLRHELSRRIKTRITPRLRFHYDKTN 107
Query: 177 ERGSRVIAIL 186
G+ + ++
Sbjct: 108 AYGNYMFGLI 117
>gi|407790506|ref|ZP_11137600.1| ribosome-binding factor A [Gallaecimonas xiamenensis 3-C-1]
gi|407204054|gb|EKE74036.1| ribosome-binding factor A [Gallaecimonas xiamenensis 3-C-1]
Length = 133
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 77/141 (54%), Gaps = 15/141 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + V +++QRE++ M+L +V + +G + T+S VEVS DL KV+
Sbjct: 7 RTRRVGQELQREIA-MILQREV------KDPRIG-------MVTVSGVEVSRDLSHAKVF 52
Query: 129 VSVFGDDRGK-EVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
+++F D K + + GL+ Y+RS +G R++LR+ PE++F+ D S G R+ +
Sbjct: 53 ITLFDQDEAKVKETLKGLQEAKPYIRSLVGGRLRLRIVPELKFVHDTSLIEGMRISNAVS 112
Query: 188 RIKAEKEAAKSKNKEQFESPD 208
+ A EA K+ + + E +
Sbjct: 113 QAVAADEAKKAASGREDEDKE 133
>gi|452990669|emb|CCQ98078.1| ribosome-binding factor A [Clostridium ultunense Esp]
Length = 120
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 69/130 (53%), Gaps = 14/130 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R +A+QI++EL + + L + +G T+ VEVS+DL K++
Sbjct: 5 RTNRIAEQIKKELGFLFQRE-------LKDPRIG-------FVTVMGVEVSSDLSQAKIF 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VSV G + K+ + L+ ++RS++G+R++LR PE+ F D S + G R+ IL
Sbjct: 51 VSVMGSEEEKKETLKTLEKAQGFLRSEIGKRIELRHVPELIFKLDTSIDYGDRIERILSG 110
Query: 189 IKAEKEAAKS 198
+K EK KS
Sbjct: 111 LKEEKSHEKS 120
>gi|160947560|ref|ZP_02094727.1| hypothetical protein PEPMIC_01495 [Parvimonas micra ATCC 33270]
gi|158446694|gb|EDP23689.1| ribosome-binding factor A [Parvimonas micra ATCC 33270]
Length = 132
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 67/129 (51%), Gaps = 14/129 (10%)
Query: 66 NPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
N +R+ + +I R LSD + + +R S+T I+ V V+ DL +
Sbjct: 2 NAKRLGRIESEINRVLSDAIYN------------GIKDNRIDPSITNITKVSVTNDLGIC 49
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
V + VFGD + KE + GL+S Y++ ++ + LR TP++ F DESFE+ + + +
Sbjct: 50 YVSIGVFGDTKTKEKTMKGLESATGYMKKRISETLDLRHTPKLIFKLDESFEKAALMNEL 109
Query: 186 LDRIKAEKE 194
+ IK KE
Sbjct: 110 I--IKVSKE 116
>gi|152980431|ref|YP_001354184.1| ribosome-binding factor A [Janthinobacterium sp. Marseille]
gi|172049092|sp|A6T0Y7.1|RBFA_JANMA RecName: Full=Ribosome-binding factor A
gi|151280508|gb|ABR88918.1| ribosome-binding factor A [Janthinobacterium sp. Marseille]
Length = 128
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 74/137 (54%), Gaps = 19/137 (13%)
Query: 67 PRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVK 126
P R VA QIQR+LS+++ + L + +G + TI++V+V+ D K
Sbjct: 9 PGRGLRVADQIQRDLSEIIAFE-------LKDPRVG-------MITITEVQVTPDYAHAK 54
Query: 127 VYVSVFGDDRGK-EVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
V+ ++ D + + ++GL + + Y+R QLGRR+ + PE+ F+ D S RG + +
Sbjct: 55 VFFTMLSDKKDDIKNTVSGLTAASGYIRGQLGRRLTIHTLPELHFVHDTSTARGIEMSKL 114
Query: 186 LDRIKAEKEAAKSKNKE 202
+D E A+++K+ E
Sbjct: 115 ID----EANASRAKDAE 127
>gi|284048691|ref|YP_003399030.1| ribosome-binding factor A [Acidaminococcus fermentans DSM 20731]
gi|283952912|gb|ADB47715.1| ribosome-binding factor A [Acidaminococcus fermentans DSM 20731]
Length = 118
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 50/84 (59%)
Query: 110 LTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIR 169
TI+ VEVS DL K+YVS++G + + A GL+S + R ++ RR+ LR+ P +
Sbjct: 32 FVTITGVEVSNDLSYAKIYVSLYGSEEQQAAAWKGLQSALGFFRREIARRIDLRVAPVLS 91
Query: 170 FIEDESFERGSRVIAILDRIKAEK 193
F +D S E + + +IL +K E+
Sbjct: 92 FHKDTSMEYSAHIESILHELKKEE 115
>gi|375085571|ref|ZP_09732204.1| ribosome-binding factor A [Megamonas funiformis YIT 11815]
gi|291532982|emb|CBL06095.1| ribosome-binding factor A [Megamonas hypermegale ART12/1]
gi|374567176|gb|EHR38406.1| ribosome-binding factor A [Megamonas funiformis YIT 11815]
Length = 118
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 71/126 (56%), Gaps = 14/126 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R++ V + I++E S++++ + L + +G TI++V+VS+DL K+Y
Sbjct: 5 RIEKVQELIKQEASEIIMRE-------LKDPRIG-------FVTITEVDVSSDLHNAKLY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VS+ G D+ E GL S ++R +L R++L+ PEI+F D S + + + +L +
Sbjct: 51 VSILGSDKQIEDTWKGLNSSLGFIRRELAHRIRLKFIPEIKFFMDTSLQYSAHIQELLIK 110
Query: 189 IKAEKE 194
++ ++E
Sbjct: 111 VQKDEE 116
>gi|325981565|ref|YP_004293967.1| ribosome-binding factor A [Nitrosomonas sp. AL212]
gi|325531084|gb|ADZ25805.1| ribosome-binding factor A [Nitrosomonas sp. AL212]
Length = 127
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 14/123 (11%)
Query: 73 VAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVF 132
+A QIQREL+D++ + D + LT I+ VEV+ D K++ +
Sbjct: 11 IADQIQRELADLIQNEI-------------KDPRIKQLT-ITAVEVTRDYSHAKIFYTTL 56
Query: 133 GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRIKAE 192
+ GL+ ++RS L RMKLRL P++ FI DES ERG R+ ++D A+
Sbjct: 57 THQDENFLIEKGLEHATGFLRSNLSHRMKLRLVPQLHFIYDESVERGVRLSKLIDEAIAQ 116
Query: 193 KEA 195
+A
Sbjct: 117 DQA 119
>gi|449128237|ref|ZP_21764484.1| ribosome-binding factor A [Treponema denticola SP33]
gi|448941570|gb|EMB22471.1| ribosome-binding factor A [Treponema denticola SP33]
Length = 132
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 78/154 (50%), Gaps = 26/154 (16%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R+ + +QI+ E+S ++ + K+ D +SSL +I+ V VS DL KVY
Sbjct: 5 RLARLGEQIREEISVLICSGKI------------KDPRVSSLLSINRVIVSGDLAYAKVY 52
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VS F D+ + + GL++ + ++R+ L +++ +R PE+ FI D+S + G ++ L+
Sbjct: 53 VSSFLDEHKTKQGVRGLENASGFIRTSLAKKLHIRQCPELTFIFDKSIKEGIDMVNKLES 112
Query: 189 IKAEKEAAKSKNKEQFESPDLPEDERDWEGDDPD 222
+ E F PD EDE + + D
Sbjct: 113 L------------EYFTDPD--EDEGNAGSSEAD 132
>gi|292492787|ref|YP_003528226.1| ribosome-binding factor A [Nitrosococcus halophilus Nc4]
gi|291581382|gb|ADE15839.1| ribosome-binding factor A [Nitrosococcus halophilus Nc4]
Length = 127
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 54/91 (59%)
Query: 110 LTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIR 169
L T+S V VS DL+ KVYV+ G ++ + +A L A +++ L +R++LR P +R
Sbjct: 34 LVTVSHVGVSPDLRQAKVYVTFLGGEKNIQQQLAVLNKAAGFLQHGLSQRVELRAIPRLR 93
Query: 170 FIEDESFERGSRVIAILDRIKAEKEAAKSKN 200
F+ D+S ERG + A++D ++ +S N
Sbjct: 94 FVYDDSIERGRHLSALIDEAVRKQSGGRSGN 124
>gi|421496533|ref|ZP_15943761.1| ribosome-binding factor A [Aeromonas media WS]
gi|407184521|gb|EKE58350.1| ribosome-binding factor A [Aeromonas media WS]
Length = 144
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 76/145 (52%), Gaps = 19/145 (13%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + V +QIQRE++ +LQ V + +G + T+SDVEVS DL K+Y
Sbjct: 7 RTRRVGQQIQREIA------LILQREV-KDPRIG-------MVTVSDVEVSKDLNYAKIY 52
Query: 129 VSVFGDDRGKEVAIAGLKS---KAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
V+ + E GLK A Y+RS LG M+LR+ PE+RF D++ G R+ +
Sbjct: 53 VTFLQLENDAERIAEGLKGLTEAAGYIRSLLGSAMRLRVVPELRFYYDQTLVEGMRLSNL 112
Query: 186 L-DRIKAEKEAAKSKNKEQFE-SPD 208
+ + ++ +K +E+ E +PD
Sbjct: 113 VTNTVREDKRRMTEAGREEDEAAPD 137
>gi|392310277|ref|ZP_10272811.1| ribosome-binding factor A, role in processing of 16S rRNA
[Pseudoalteromonas citrea NCIMB 1889]
Length = 132
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 75/141 (53%), Gaps = 21/141 (14%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R V +QIQ+E++ +L + + + LG + T+S VEVS DL K++
Sbjct: 6 RTDRVGQQIQKEIAVILQRE-------IKDPRLG-------MVTVSAVEVSRDLSYAKIF 51
Query: 129 VSVFG---DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
++V +D+ K+ ++A L Y+RS LG+R++ R+ PE+RF+ D S G R+ +
Sbjct: 52 ITVLNTSDEDKTKQ-SVAILNDATGYIRSILGKRIRARIMPELRFVVDNSLLEGMRISNL 110
Query: 186 LD---RIKAEKEAAKSKNKEQ 203
+D R EK +S EQ
Sbjct: 111 VDSVIRDDNEKRGPESSEDEQ 131
>gi|297617189|ref|YP_003702348.1| ribosome-binding factor A [Syntrophothermus lipocalidus DSM 12680]
gi|297145026|gb|ADI01783.1| ribosome-binding factor A [Syntrophothermus lipocalidus DSM 12680]
Length = 126
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 73/137 (53%), Gaps = 12/137 (8%)
Query: 66 NPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
+ RR + +A++I+R LS L + + + P A +I+ V+VS DL
Sbjct: 2 SSRRQERLAEEIKRGLS-ALFFEGLKDPGIDPRA-----------VSITRVDVSRDLSYA 49
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
+V+VSV GD++ +A L+ ++RS L + LR PEI F D+S E G R+ AI
Sbjct: 50 RVHVSVLGDEKKCRDTMAALERARGFIRSVLAGELNLRHAPEIVFQMDKSIEHGVRIAAI 109
Query: 186 LDRIKAEKEAAKSKNKE 202
L+ +KA+++ S E
Sbjct: 110 LNELKAQEKREDSDESE 126
>gi|46446394|ref|YP_007759.1| ribosome binding factor A [Candidatus Protochlamydia amoebophila
UWE25]
gi|61215033|sp|Q6MD65.1|RBFA_PARUW RecName: Full=Ribosome-binding factor A
gi|46400035|emb|CAF23484.1| putative ribosome binding factor A [Candidatus Protochlamydia
amoebophila UWE25]
Length = 131
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 59/100 (59%)
Query: 106 YLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLT 165
Y++ L T++ V++S DL+ KV++S+ G ++ K I L S A ++ +++ +R
Sbjct: 29 YVTELVTVTRVQISRDLRYAKVFISIIGSEQAKVETIEALNSAAGFIAVNASQKVVMRYF 88
Query: 166 PEIRFIEDESFERGSRVIAILDRIKAEKEAAKSKNKEQFE 205
PE+ F D+S ++ R+ +L +I E+E+ + N +Q E
Sbjct: 89 PELNFKLDDSVDKHMRIEELLGKITKERESRQGDNSDQLE 128
>gi|329119691|ref|ZP_08248372.1| ribosome-binding factor A [Neisseria bacilliformis ATCC BAA-1200]
gi|327464288|gb|EGF10592.1| ribosome-binding factor A [Neisseria bacilliformis ATCC BAA-1200]
Length = 123
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 72/135 (53%), Gaps = 18/135 (13%)
Query: 59 KTVKCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEV 118
KT + A RVK +QI REL++M+ T G + TI++V+V
Sbjct: 3 KTRRGYARQDRVK---EQIMRELAEMVRT--------------GLKDPRAGFITINEVDV 45
Query: 119 SADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFER 178
S D +Y +V DD +++ A L+ ++RS+L +R+KL TPE+ F D+S ER
Sbjct: 46 SRDYSHATIYYTVL-DDSTRDITEAALEHAKGHLRSELAKRIKLFKTPELHFKYDQSLER 104
Query: 179 GSRVIAILDRIKAEK 193
G + +++++ AEK
Sbjct: 105 GMSISHLIEQVAAEK 119
>gi|449125882|ref|ZP_21762184.1| ribosome-binding factor A [Treponema denticola OTK]
gi|448939851|gb|EMB20768.1| ribosome-binding factor A [Treponema denticola OTK]
Length = 132
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 75/145 (51%), Gaps = 26/145 (17%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R+ + +QI+ E+S ++ + K+ D +SSL +I+ V VS DL KVY
Sbjct: 5 RLARLGEQIREEISSLICSGKI------------KDPRVSSLLSINRVIVSGDLAYAKVY 52
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VS F D+ + + GL++ + ++R+ L +++ +R PE+ FI D+S + G ++ L+
Sbjct: 53 VSSFLDEHKTKQGVRGLENASGFIRTSLAKKLHVRQCPELTFIFDKSIKEGIDMVNKLES 112
Query: 189 IKAEKEAAKSKNKEQFESPDLPEDE 213
+ E F PD EDE
Sbjct: 113 L------------EYFTDPD--EDE 123
>gi|225181386|ref|ZP_03734830.1| ribosome-binding factor A [Dethiobacter alkaliphilus AHT 1]
gi|225167967|gb|EEG76774.1| ribosome-binding factor A [Dethiobacter alkaliphilus AHT 1]
Length = 122
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 68/119 (57%), Gaps = 13/119 (10%)
Query: 68 RRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKV 127
+R V ++I+RE+S +L T+ D ++ L +++DV V+ DL+ K+
Sbjct: 4 QRAHRVGEEIKREVSSILRTEI-------------KDPRVTGLISVTDVAVTRDLRHAKL 50
Query: 128 YVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++S+ G + ++ ++ L ++RS++G+R++LR TPEI F D+S G+ + IL
Sbjct: 51 FISMLGSEEEQQETLSALSRAVGFIRSEIGKRIRLRHTPEISFHLDKSIAYGAHINKIL 109
>gi|197117692|ref|YP_002138119.1| ribosome-binding factor A [Geobacter bemidjiensis Bem]
gi|226723601|sp|B5EI59.1|RBFA_GEOBB RecName: Full=Ribosome-binding factor A
gi|197087052|gb|ACH38323.1| ribosome-binding factor A [Geobacter bemidjiensis Bem]
Length = 119
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 68/131 (51%), Gaps = 14/131 (10%)
Query: 68 RRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKV 127
+R V +QI + +S++L+ L + +G TI+ V+++ DL+ V
Sbjct: 3 KRSDKVGEQIHKIISELLIKG-------LKDPRIG-------FLTITGVKMTPDLRQATV 48
Query: 128 YVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
Y +V G D K+ + AGL S Y+R ++G+ +K+R PE+ F D S + G + +IL
Sbjct: 49 YFTVHGSDEDKKNSEAGLNSAKGYIRKEIGQALKMRFVPEVLFKYDTSLDYGQHIESILK 108
Query: 188 RIKAEKEAAKS 198
I A + +S
Sbjct: 109 EIGATDDGEQS 119
>gi|28198123|ref|NP_778437.1| ribosome-binding factor A [Xylella fastidiosa Temecula1]
gi|182680751|ref|YP_001828911.1| ribosome-binding factor A [Xylella fastidiosa M23]
gi|386084268|ref|YP_006000550.1| ribosome-binding factor A [Xylella fastidiosa subsp. fastidiosa
GB514]
gi|417559529|ref|ZP_12210436.1| Ribosome-binding factor A RbfA [Xylella fastidiosa EB92.1]
gi|32129950|sp|Q87EV3.1|RBFA_XYLFT RecName: Full=Ribosome-binding factor A
gi|238691074|sp|B2I727.1|RBFA_XYLF2 RecName: Full=Ribosome-binding factor A
gi|28056183|gb|AAO28086.1| ribosomal-binding factor A [Xylella fastidiosa Temecula1]
gi|182630861|gb|ACB91637.1| ribosome-binding factor A [Xylella fastidiosa M23]
gi|307579215|gb|ADN63184.1| ribosome-binding factor A [Xylella fastidiosa subsp. fastidiosa
GB514]
gi|338177857|gb|EGO80895.1| Ribosome-binding factor A RbfA [Xylella fastidiosa EB92.1]
Length = 125
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 69/119 (57%), Gaps = 15/119 (12%)
Query: 68 RRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKV 127
+R + ++ QI+R+L +Q AV D L S++ +SDVEV+ D+ KV
Sbjct: 7 QRTERISVQIRRDLG------AFVQAAV-------RDHGLPSMS-VSDVEVTRDMAHAKV 52
Query: 128 YVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
+V+ +R E A+AGLK+ A+ +R QL + M+LR PE+ F D+S +RG R+ +L
Sbjct: 53 FVTALQAERSFE-AVAGLKALARELRMQLAQTMRLRFVPELHFHYDDSLDRGERIDTLL 110
>gi|343500708|ref|ZP_08738598.1| ribosome-binding factor A [Vibrio tubiashii ATCC 19109]
gi|418477437|ref|ZP_13046570.1| ribosome-binding factor A [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
gi|342820070|gb|EGU54901.1| ribosome-binding factor A [Vibrio tubiashii ATCC 19109]
gi|384575177|gb|EIF05631.1| ribosome-binding factor A [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
Length = 135
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 70/125 (56%), Gaps = 15/125 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + VA+Q+Q+EL+ M+L +V ++ LG + TISDVEVS DL KV+
Sbjct: 7 RTQRVAQQLQKELA-MILQREV------RDSRLG-------MVTISDVEVSRDLAYAKVF 52
Query: 129 VSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
V+ ++ E + L+ ++R LG+R++LRLTPE+RF D + G R+ ++
Sbjct: 53 VTFLCVGEQTPESCLEALREHEVHIRMMLGKRIRLRLTPEVRFHYDNTLVEGMRMSNLVS 112
Query: 188 RIKAE 192
+ E
Sbjct: 113 EVVNE 117
>gi|160913526|ref|ZP_02076217.1| hypothetical protein EUBDOL_00002 [Eubacterium dolichum DSM 3991]
gi|158434078|gb|EDP12367.1| ribosome-binding factor A [Eubacterium dolichum DSM 3991]
Length = 120
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 61/110 (55%), Gaps = 14/110 (12%)
Query: 73 VAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVF 132
+A IQ+E+S+ ++QF L + +G TI+DV VS DL + KVYVS
Sbjct: 16 IAGIIQKEVSE------IIQFQ-LKDPKIG-------FITITDVVVSGDLSIAKVYVSFL 61
Query: 133 GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
G + + L+ ++RS+L +RM +R P + F+ D+S E+G+++
Sbjct: 62 GQKAREAAGMKALERSKGFIRSELAKRMTIRKVPSLVFLIDDSLEKGNKI 111
>gi|170719908|ref|YP_001747596.1| ribosome-binding factor A [Pseudomonas putida W619]
gi|229568642|sp|B1J2B0.1|RBFA_PSEPW RecName: Full=Ribosome-binding factor A
gi|169757911|gb|ACA71227.1| ribosome-binding factor A [Pseudomonas putida W619]
Length = 132
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 74/136 (54%), Gaps = 16/136 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL++++ + + + +G L TI+ V+VS DL KV+
Sbjct: 7 RTQRIGDQMQRELAELIRRE-------VKDPRVG-------LVTITAVDVSRDLGHAKVF 52
Query: 129 VSVFGDDRGKEV--AIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G++ V ++ L S A ++R LGR M+LR P++ F DES RG + A++
Sbjct: 53 ITVMGEETPDAVQQSLKALNSAASFLRLHLGRSMQLRSVPQLHFHFDESVSRGVHLSALI 112
Query: 187 DRIKAEKEAAKSKNKE 202
+R AE K +++
Sbjct: 113 ERAVAEDRLHKDTDEQ 128
>gi|254507466|ref|ZP_05119600.1| ribosome-binding factor A [Vibrio parahaemolyticus 16]
gi|219549536|gb|EED26527.1| ribosome-binding factor A [Vibrio parahaemolyticus 16]
Length = 135
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 70/125 (56%), Gaps = 15/125 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + VA+Q+Q+EL+ M+L +V ++ LG + TISDVEVS DL KV+
Sbjct: 7 RTQRVAQQLQKELA-MILQREV------RDSRLG-------MVTISDVEVSRDLAYAKVF 52
Query: 129 VSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
V+ ++ E + L+ ++R LG+R++LRLTPE+RF D + G R+ ++
Sbjct: 53 VTFLCVGEQTPESCLEALREHEVHIRMMLGKRIRLRLTPEVRFHYDNTLVEGMRMSNLVS 112
Query: 188 RIKAE 192
+ E
Sbjct: 113 EVVNE 117
>gi|363888817|ref|ZP_09316195.1| ribosome-binding factor A [Eubacteriaceae bacterium CM5]
gi|363895064|ref|ZP_09322084.1| ribosome-binding factor A [Eubacteriaceae bacterium ACC19a]
gi|402837581|ref|ZP_10886100.1| ribosome-binding factor A [Eubacteriaceae bacterium OBRC8]
gi|361959821|gb|EHL13082.1| ribosome-binding factor A [Eubacteriaceae bacterium ACC19a]
gi|361967438|gb|EHL20260.1| ribosome-binding factor A [Eubacteriaceae bacterium CM5]
gi|402274874|gb|EJU24044.1| ribosome-binding factor A [Eubacteriaceae bacterium OBRC8]
Length = 132
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 73/141 (51%), Gaps = 21/141 (14%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + ++++I++ ++ ML+ + +L SL ++ VEV DL+ +Y
Sbjct: 5 RTQRISEEIKKSITKMLIEGHIKNSVILN---------THSLISVVAVEVVRDLKYAYIY 55
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+SV G GKE I K A ++R ++G+++KLR TPE+ F+ D+S + G +D
Sbjct: 56 ISVLGS--GKEEIIESFKKSAGFIRREVGKQIKLRYTPELIFLSDDSIKNG------VDM 107
Query: 189 IKAEKEAAK----SKNKEQFE 205
I E AK ++ E FE
Sbjct: 108 INKINEVAKHDEDTQVNENFE 128
>gi|260887253|ref|ZP_05898516.1| ribosome-binding factor A [Selenomonas sputigena ATCC 35185]
gi|330838990|ref|YP_004413570.1| Ribosome-binding factor A [Selenomonas sputigena ATCC 35185]
gi|402833873|ref|ZP_10882482.1| ribosome-binding factor A [Selenomonas sp. CM52]
gi|260863315|gb|EEX77815.1| ribosome-binding factor A [Selenomonas sputigena ATCC 35185]
gi|329746754|gb|AEC00111.1| Ribosome-binding factor A [Selenomonas sputigena ATCC 35185]
gi|402279603|gb|EJU28387.1| ribosome-binding factor A [Selenomonas sp. CM52]
Length = 119
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 67/118 (56%), Gaps = 14/118 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R++ V + +++E+S ++L + L + +G T++ VE++ DL+ K++
Sbjct: 5 RIEKVQELMKQEISQIILQE-------LKDPRIG-------FVTVTKVEMTGDLREAKIF 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
VS+ G D + + GLKS ++R ++G+R++LR TPEI F D+S S + +L
Sbjct: 51 VSIMGKDEALKDTLQGLKSSLGFIRREIGKRIRLRFTPEISFALDDSLAYSSHIQELL 108
>gi|383785902|ref|YP_005470471.1| ribosome-binding factor A [Fervidobacterium pennivorans DSM 9078]
gi|383108749|gb|AFG34352.1| ribosome-binding factor A [Fervidobacterium pennivorans DSM 9078]
Length = 125
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 62/106 (58%), Gaps = 5/106 (4%)
Query: 95 VLPEAALGA-DRYLS---SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAK 150
VL EA + D Y+ SL T S VEVS D + ++VSV GD+ ++ + L+SK
Sbjct: 17 VLAEALMEMKDPYIDTVRSLITFSRVEVSKDKRYADIFVSVLGDENKRKEVVEYLESKKG 76
Query: 151 YVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRIKAEKEAA 196
Y R+ + + +++ + PE+RF ED+ E R+ +LD IK EKE +
Sbjct: 77 YFRTYVAKNIRMYVAPELRFKEDKGIEATVRIAQLLDSIK-EKEKS 121
>gi|452124685|ref|ZP_21937269.1| ribosome-binding factor A [Bordetella holmesii F627]
gi|452128079|ref|ZP_21940658.1| ribosome-binding factor A [Bordetella holmesii H558]
gi|451923915|gb|EMD74056.1| ribosome-binding factor A [Bordetella holmesii F627]
gi|451926294|gb|EMD76430.1| ribosome-binding factor A [Bordetella holmesii H558]
Length = 132
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 25/152 (16%)
Query: 62 KCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSAD 121
K + P R +A+QIQ++L+ ++ + D + L TIS VE+SAD
Sbjct: 5 KSKSIPGRNLRLAEQIQKDLAGIIQRE--------------IDMTRAGLITISGVELSAD 50
Query: 122 LQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSR 181
KV+ +V G + E A A L KA ++ SQL + +++ P +RF D ERG
Sbjct: 51 YAHAKVFFTVLGAE--PETAAALLNEKAGWLHSQLYKLLQIHTVPTLRFFHDPQLERGIE 108
Query: 182 VIAILDRIKAEKEAAKSKNKEQFESPDLPEDE 213
+ ++DR + Q PD PED+
Sbjct: 109 MSMLIDR---------ANRGPQSGVPDEPEDQ 131
>gi|33152522|ref|NP_873875.1| ribosome-binding factor A [Haemophilus ducreyi 35000HP]
gi|38372437|sp|Q7VLI3.1|RBFA_HAEDU RecName: Full=Ribosome-binding factor A
gi|33148745|gb|AAP96264.1| ribosome binding factor A [Haemophilus ducreyi 35000HP]
Length = 126
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMKLRLTP 166
+ T+SDVEVS DL K++V+ D+ +A + GL+ Y+R+ LG+ M+LR+ P
Sbjct: 33 GMVTVSDVEVSRDLAYAKIFVTFLFDNDQDIIAQGMKGLEKAGPYIRTLLGKAMRLRILP 92
Query: 167 EIRFIEDESFERGSRV 182
E+RFI D+S G R+
Sbjct: 93 ELRFIYDQSLVEGMRM 108
>gi|449118075|ref|ZP_21754490.1| ribosome-binding factor A [Treponema denticola H-22]
gi|448949966|gb|EMB30790.1| ribosome-binding factor A [Treponema denticola H-22]
Length = 132
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 75/145 (51%), Gaps = 26/145 (17%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R+ + +QI+ E+S ++ + K+ D +SSL +I+ V VS DL KVY
Sbjct: 5 RLARLGEQIREEISALICSGKI------------KDPRVSSLLSINRVIVSGDLAYAKVY 52
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VS F D+ + + GL++ + ++R+ L +++ +R PE+ FI D+S + G ++ L+
Sbjct: 53 VSSFLDEHKTKQGVRGLENASGFIRTSLAKKLHVRQCPELTFIFDKSIKEGIDMVNKLES 112
Query: 189 IKAEKEAAKSKNKEQFESPDLPEDE 213
+ E F PD EDE
Sbjct: 113 L------------EYFTEPD--EDE 123
>gi|406038115|ref|ZP_11045479.1| ribosome-binding factor A [Acinetobacter parvus DSM 16617 = CIP
108168]
Length = 133
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 70/130 (53%), Gaps = 20/130 (15%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA +R+K +A +QRELS+++ + L + LG L TIS V+VSAD+
Sbjct: 1 MAGSQRLKRMADSVQRELSELIRQE-------LKDPRLGG------LVTISAVKVSADMG 47
Query: 124 VVKVYVSVFGDDRGKEVAIAG-------LKSKAKYVRSQLGRRMKLRLTPEIRFIEDESF 176
+VYV+V G + G E + L + ++R +L RR+K R+TP +RF D++
Sbjct: 48 YAEVYVTVMGRELGDEQSEVANKETLDVLNKASGFLRHELSRRIKTRITPRLRFHYDKTN 107
Query: 177 ERGSRVIAIL 186
G+ + ++
Sbjct: 108 AYGNYMFGLI 117
>gi|326791496|ref|YP_004309317.1| ribosome-binding factor A [Clostridium lentocellum DSM 5427]
gi|326542260|gb|ADZ84119.1| ribosome-binding factor A [Clostridium lentocellum DSM 5427]
Length = 118
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 51/79 (64%), Gaps = 4/79 (5%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEI 168
++ ++ VE + DL+ KV++SV D++ KE A+A L Y+R ++ RR+ LR TPE+
Sbjct: 33 AMISVIAVETTNDLKTAKVFISVLQDNK-KEAALAALTKAQGYIRKEIARRINLRNTPEL 91
Query: 169 RFIEDESFERG---SRVIA 184
F DES ERG S++IA
Sbjct: 92 LFRLDESIERGMQMSKMIA 110
>gi|95929625|ref|ZP_01312367.1| ribosome-binding factor A [Desulfuromonas acetoxidans DSM 684]
gi|95134322|gb|EAT15979.1| ribosome-binding factor A [Desulfuromonas acetoxidans DSM 684]
Length = 119
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 67/123 (54%), Gaps = 15/123 (12%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA R + VA+QI +E+SD++L L + +G TI+ V++S+DL+
Sbjct: 1 MATQRTYR-VAEQIHKEISDIMLRG-------LRDPRVG-------FVTITSVDISSDLR 45
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++ +V G++ E GL S ++R +LG+RMKLR P++ F D S GS +
Sbjct: 46 HAKIFFTVMGEEADAEKTQQGLDSAVPFLRRELGKRMKLRHVPDLVFKYDTSIAYGSHIE 105
Query: 184 AIL 186
+L
Sbjct: 106 ELL 108
>gi|325921394|ref|ZP_08183251.1| ribosome-binding factor A [Xanthomonas gardneri ATCC 19865]
gi|325548152|gb|EGD19149.1| ribosome-binding factor A [Xanthomonas gardneri ATCC 19865]
Length = 130
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 112 TISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFI 171
++SDVEV+ DL KV+V+ +R E A+ GLK A +R+QL R MKLR PE+ F
Sbjct: 37 SVSDVEVTRDLAHAKVFVTALQQERSVE-AVKGLKEIAGQLRTQLARAMKLRHVPELHFH 95
Query: 172 EDESFERGSRVIAIL 186
D+S +RG R+ +L
Sbjct: 96 YDDSVDRGERIDNLL 110
>gi|429887875|ref|ZP_19369380.1| Ribosome-binding factor A [Vibrio cholerae PS15]
gi|429225043|gb|EKY31329.1| Ribosome-binding factor A [Vibrio cholerae PS15]
Length = 132
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 65/115 (56%), Gaps = 15/115 (13%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + VA+Q+Q+EL+ M+L +V ++ LG + TISDVEVS DL KV+
Sbjct: 7 RTQRVAQQLQKELA-MILQREV------RDSRLG-------MVTISDVEVSRDLAYAKVF 52
Query: 129 VSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
V+ + E +A L+ +R LG++++LRLTPEIRF D + G R+
Sbjct: 53 VTFLCIGGQTPESCLAALREHEVQIRMMLGKQIRLRLTPEIRFYYDNTLVEGMRM 107
>gi|350571179|ref|ZP_08939514.1| ribosome-binding factor A [Neisseria wadsworthii 9715]
gi|349792946|gb|EGZ46790.1| ribosome-binding factor A [Neisseria wadsworthii 9715]
Length = 123
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 15/125 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
RV V +QI RE+++++ T G + TI++VEV+ D +Y
Sbjct: 10 RVDRVKEQIMREMAELVRT--------------GLKDPRAGFITINEVEVTRDYSHATIY 55
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+V DD +E+ L+ ++RS+L +R+KL PE+ F DES ERG + ++D+
Sbjct: 56 YTVL-DDATREITAEALEYAKGFLRSELSKRIKLFRIPELHFEYDESIERGMSISHLIDK 114
Query: 189 IKAEK 193
+ AEK
Sbjct: 115 VAAEK 119
>gi|104780029|ref|YP_606527.1| ribosome-binding factor A [Pseudomonas entomophila L48]
gi|166219392|sp|Q1IF42.1|RBFA_PSEE4 RecName: Full=Ribosome-binding factor A
gi|95109016|emb|CAK13712.1| ribosome-binding factor A [Pseudomonas entomophila L48]
Length = 132
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 74/140 (52%), Gaps = 20/140 (14%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL++++ + + + +G L TI+ V+VS DL KV+
Sbjct: 7 RTQRIGDQMQRELAELIRRE-------VKDPRVG-------LVTITAVDVSRDLGHAKVF 52
Query: 129 VSVFGDDRGKEV--AIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G D V + L S A ++R LGR M+LR P++ F DES RG + A++
Sbjct: 53 ITVMGQDGTDAVPQTLKALTSAASFLRLHLGRVMQLRSVPQLHFHFDESVSRGVHLSALI 112
Query: 187 DRIKAE----KEAAKSKNKE 202
+R AE ++A + KE
Sbjct: 113 ERAVAEDRLHQDAGEPDTKE 132
>gi|374704254|ref|ZP_09711124.1| ribosome-binding factor A [Pseudomonas sp. S9]
Length = 145
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 67/127 (52%), Gaps = 16/127 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++L + D +S L T++ VEVS D KV+
Sbjct: 19 RAQRIGDQMQRELAQLILREV-------------KDPRVSGLVTVTAVEVSRDASHAKVF 65
Query: 129 VSVFG---DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
V+V G D ++ L + ++R QLG+ MKLR P +RF DES RG+++ A+
Sbjct: 66 VTVMGAEIDAESIRQSVKVLNDASGFLRMQLGKAMKLRSVPNLRFHYDESVIRGAQLSAL 125
Query: 186 LDRIKAE 192
++R E
Sbjct: 126 IERAVTE 132
>gi|359448793|ref|ZP_09238307.1| ribosome-binding factor A [Pseudoalteromonas sp. BSi20480]
gi|358045363|dbj|GAA74556.1| ribosome-binding factor A [Pseudoalteromonas sp. BSi20480]
Length = 148
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 81/158 (51%), Gaps = 20/158 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R V +QIQ+E++ +L + + + LG + T+S VEVS DL K++
Sbjct: 6 RTDRVGQQIQKEIAVILQRE-------IKDPRLG-------MVTVSAVEVSRDLSYAKIF 51
Query: 129 VSVFG---DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
++VF +D K+ A L Y+RS LG+R++ R+ PE++F+ D S G R+ +
Sbjct: 52 ITVFNTKDEDAAKQSAKV-LNEATGYIRSLLGKRIRARIMPELKFVVDNSLMEGMRISNL 110
Query: 186 LDRIKAEKEAAKSKNKEQFESPDLPE-DERDWEGDDPD 222
+D I E + AK N++ D D+ + DD D
Sbjct: 111 VDTIIRE-DNAKHVNEDDSSVDDASNSDDNIKQADDKD 147
>gi|445059811|ref|YP_007385215.1| ribosome-binding factor A [Staphylococcus warneri SG1]
gi|443425868|gb|AGC90771.1| ribosome-binding factor A [Staphylococcus warneri SG1]
Length = 116
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 64/114 (56%), Gaps = 14/114 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + V +Q+++E+ D ++ +KV V TI+DVE++ DL KVY
Sbjct: 5 RAERVGEQMKKEIMD-IVNNKVKDPRV-------------GFITITDVELTNDLSQGKVY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
++V G+ + + L+ +++S+LG RM+LR+ PE+ F DES E G+++
Sbjct: 51 LTVLGNQKEVDNTFKALEKAKGFIKSELGSRMRLRIIPELSFEYDESIEYGNKI 104
>gi|42526615|ref|NP_971713.1| ribosome-binding factor A [Treponema denticola ATCC 35405]
gi|422342940|ref|ZP_16423879.1| ribosome-binding factor A [Treponema denticola F0402]
gi|449107008|ref|ZP_21743668.1| ribosome-binding factor A [Treponema denticola ASLM]
gi|449109763|ref|ZP_21746396.1| ribosome-binding factor A [Treponema denticola ATCC 33520]
gi|449112274|ref|ZP_21748828.1| ribosome-binding factor A [Treponema denticola ATCC 33521]
gi|449115507|ref|ZP_21751971.1| ribosome-binding factor A [Treponema denticola ATCC 35404]
gi|449120489|ref|ZP_21756874.1| ribosome-binding factor A [Treponema denticola H1-T]
gi|449122896|ref|ZP_21759227.1| ribosome-binding factor A [Treponema denticola MYR-T]
gi|449130864|ref|ZP_21767083.1| ribosome-binding factor A [Treponema denticola SP37]
gi|451968705|ref|ZP_21921934.1| ribosome-binding factor A [Treponema denticola US-Trep]
gi|61215109|sp|Q73NP7.1|RBFA_TREDE RecName: Full=Ribosome-binding factor A
gi|41816808|gb|AAS11594.1| ribosome-binding factor A [Treponema denticola ATCC 35405]
gi|325473157|gb|EGC76353.1| ribosome-binding factor A [Treponema denticola F0402]
gi|448941904|gb|EMB22804.1| ribosome-binding factor A [Treponema denticola SP37]
gi|448946992|gb|EMB27842.1| ribosome-binding factor A [Treponema denticola MYR-T]
gi|448947884|gb|EMB28727.1| ribosome-binding factor A [Treponema denticola H1-T]
gi|448953284|gb|EMB34079.1| ribosome-binding factor A [Treponema denticola ATCC 35404]
gi|448955736|gb|EMB36500.1| ribosome-binding factor A [Treponema denticola ATCC 33521]
gi|448958216|gb|EMB38949.1| ribosome-binding factor A [Treponema denticola ATCC 33520]
gi|448963633|gb|EMB44310.1| ribosome-binding factor A [Treponema denticola ASLM]
gi|451702718|gb|EMD57120.1| ribosome-binding factor A [Treponema denticola US-Trep]
Length = 132
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 75/145 (51%), Gaps = 26/145 (17%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R+ + +QI+ E+S ++ + K+ D +SSL +I+ V VS DL KVY
Sbjct: 5 RLARLGEQIREEISALICSGKI------------KDPRVSSLLSINRVIVSGDLAYAKVY 52
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VS F D+ + + GL++ + ++R+ L +++ +R PE+ FI D+S + G ++ L+
Sbjct: 53 VSSFLDEHKTKQGVRGLENASGFIRTSLAKKLHVRQCPELTFIFDKSIKEGIDMVNKLES 112
Query: 189 IKAEKEAAKSKNKEQFESPDLPEDE 213
+ E F PD EDE
Sbjct: 113 L------------EYFTDPD--EDE 123
>gi|242373562|ref|ZP_04819136.1| ribosome-binding factor A [Staphylococcus epidermidis M23864:W1]
gi|242348925|gb|EES40527.1| ribosome-binding factor A [Staphylococcus epidermidis M23864:W1]
Length = 118
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 48/71 (67%)
Query: 112 TISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFI 171
TI+DVE++ DL KVY++V G+++ + L+ +++S+LG RM+LR+ P++ F
Sbjct: 36 TITDVELTNDLSQAKVYLTVLGNEKEVDNTFKALEKAKGFIKSELGSRMRLRIIPDLTFE 95
Query: 172 EDESFERGSRV 182
DES E G+++
Sbjct: 96 YDESIEYGNKI 106
>gi|440730782|ref|ZP_20910851.1| ribosome-binding factor A [Xanthomonas translucens DAR61454]
gi|440377100|gb|ELQ13754.1| ribosome-binding factor A [Xanthomonas translucens DAR61454]
Length = 133
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 65/118 (55%), Gaps = 15/118 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R V+ QI+R+L ++ AV D L S++ +SDVEV+ DL KV+
Sbjct: 8 RTDRVSAQIRRDLG------TIVHSAV-------RDHGLPSVS-VSDVEVTRDLAHAKVF 53
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
V+ +R E A+ GLK A +RS+L R MKLR PE+ F D+S +RG R+ +L
Sbjct: 54 VTALLPERSVE-AVKGLKELAPQLRSELARAMKLRHVPELHFHYDDSVDRGERIDTLL 110
>gi|313199848|ref|YP_004038506.1| ribosome-binding factor a [Methylovorus sp. MP688]
gi|312439164|gb|ADQ83270.1| ribosome-binding factor A [Methylovorus sp. MP688]
Length = 123
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 70/126 (55%), Gaps = 17/126 (13%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R VA+Q+QREL+D+L QF V + +G + T+++VEVS DL KV+
Sbjct: 7 RSDRVAEQMQRELADLL------QFEV-KDPRVG-------MVTVTEVEVSGDLAHAKVF 52
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
S ++G GL+ A ++RSQL +R+ LR P++ F+ D S + G ++ ++D
Sbjct: 53 YSA---EKGTPELQKGLEKTAGFLRSQLAKRLLLRTVPQLHFVYDASIDNGMKISRLIDD 109
Query: 189 IKAEKE 194
A+ +
Sbjct: 110 ALAQDQ 115
>gi|374997043|ref|YP_004972542.1| ribosome-binding factor A [Desulfosporosinus orientis DSM 765]
gi|357215409|gb|AET70027.1| ribosome-binding factor A [Desulfosporosinus orientis DSM 765]
Length = 124
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 52/94 (55%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEI 168
T++ V+V+ DL KVYVSV G + ++ L A YVRS++G+R++LR P I
Sbjct: 31 GFVTLTSVDVADDLSHAKVYVSVLGTEDEGHASLDALNRAAGYVRSEIGKRVRLRHVPTI 90
Query: 169 RFIEDESFERGSRVIAILDRIKAEKEAAKSKNKE 202
F D S + G+ + +L + E+ K ++ E
Sbjct: 91 VFKYDPSIQHGAHIAKLLKDVGVSGESGKEESHE 124
>gi|343494419|ref|ZP_08732681.1| ribosome-binding factor A [Vibrio nigripulchritudo ATCC 27043]
gi|342825324|gb|EGU59823.1| ribosome-binding factor A [Vibrio nigripulchritudo ATCC 27043]
Length = 131
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 77/139 (55%), Gaps = 19/139 (13%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + V++Q+Q+EL+ +L + + ++ +G + TISDVEVS DL KV+
Sbjct: 7 RTQRVSQQLQKELALILQRE-------VRDSRIG-------MVTISDVEVSRDLAYAKVF 52
Query: 129 VSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSR----VI 183
V+ ++ E ++A LK +R LG+R++LRLTPE+RF D + G R V
Sbjct: 53 VTFLCVGEQTPESSLAALKEHEVQIRMMLGKRIRLRLTPEVRFTYDNTLVEGMRMSNLVS 112
Query: 184 AILDRIKAEKEAAKSKNKE 202
++ + K +KE A ++E
Sbjct: 113 EVVSKDKQKKEDAGRGDEE 131
>gi|114321096|ref|YP_742779.1| ribosome-binding factor A [Alkalilimnicola ehrlichii MLHE-1]
gi|122311320|sp|Q0A798.1|RBFA_ALHEH RecName: Full=Ribosome-binding factor A
gi|114227490|gb|ABI57289.1| ribosome-binding factor A [Alkalilimnicola ehrlichii MLHE-1]
Length = 130
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 67/122 (54%), Gaps = 19/122 (15%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + V +QIQREL++++ + L + LG + T+S+V VS DL KV+
Sbjct: 7 RTRRVGEQIQRELAELIRDE-------LRDPRLG-------MVTVSEVTVSRDLAHAKVF 52
Query: 129 VSVFG---DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
V+ G +D K V + L A Y+R LG+R+++R P + F D +F+RG R+ +
Sbjct: 53 VTALGGSDEDNAKTVEV--LTRAAGYLRKLLGQRLRIRQVPALHFQHDTAFDRGDRLSRL 110
Query: 186 LD 187
+D
Sbjct: 111 ID 112
>gi|238927227|ref|ZP_04658987.1| ribosome-binding factor A [Selenomonas flueggei ATCC 43531]
gi|238885009|gb|EEQ48647.1| ribosome-binding factor A [Selenomonas flueggei ATCC 43531]
Length = 118
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 67/128 (52%), Gaps = 14/128 (10%)
Query: 73 VAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVF 132
V + +++E+SD++ F L + +G T++ V + DL+ K+YVSV
Sbjct: 4 VQELMKQEISDII-------FNELKDPRIG-------FVTVTSVACTEDLREAKIYVSVM 49
Query: 133 GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRIKAE 192
GD++ + GL S +VR ++G+R++LR TPEI F D S + +L+ I +
Sbjct: 50 GDEKKARDTLNGLNSSLGFVRREIGKRIRLRFTPEISFALDTSLNYSDHIQRLLNEIHED 109
Query: 193 KEAAKSKN 200
+ K ++
Sbjct: 110 QPQEKKED 117
>gi|255017704|ref|ZP_05289830.1| ribosome-binding factor A [Listeria monocytogenes FSL F2-515]
Length = 100
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 20/114 (17%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R V++Q+++EL D+L + D L F T++ V+V+ DLQ
Sbjct: 4 RANRVSEQMKKELGDILNRKIKDPRLGF-----------------VTVTGVDVTGDLQEA 46
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERG 179
KV++S+ G D+ KE + L ++RS++GRR++LR PE+ F D S G
Sbjct: 47 KVFISILGTDKEKENTLLALAKAHGFIRSEIGRRIRLRKVPEMSFEIDNSIAYG 100
>gi|184156671|ref|YP_001845010.1| ribosome-binding factor A [Acinetobacter baumannii ACICU]
gi|332873079|ref|ZP_08441036.1| ribosome-binding factor A [Acinetobacter baumannii 6014059]
gi|384130338|ref|YP_005512950.1| rbfA [Acinetobacter baumannii 1656-2]
gi|384141625|ref|YP_005524335.1| ribosome-binding factor A [Acinetobacter baumannii MDR-ZJ06]
gi|385235938|ref|YP_005797277.1| ribosome-binding factor A [Acinetobacter baumannii TCDC-AB0715]
gi|387125415|ref|YP_006291297.1| ribosome-binding factor A [Acinetobacter baumannii MDR-TJ]
gi|407931276|ref|YP_006846919.1| ribosome-binding factor A [Acinetobacter baumannii TYTH-1]
gi|416147189|ref|ZP_11601645.1| ribosome-binding factor A [Acinetobacter baumannii AB210]
gi|417570207|ref|ZP_12221064.1| ribosome-binding factor A [Acinetobacter baumannii OIFC189]
gi|417577190|ref|ZP_12228035.1| ribosome-binding factor A [Acinetobacter baumannii Naval-17]
gi|417870984|ref|ZP_12515928.1| ribosome-binding factor A [Acinetobacter baumannii ABNIH1]
gi|417875644|ref|ZP_12520449.1| ribosome-binding factor A [Acinetobacter baumannii ABNIH2]
gi|417879862|ref|ZP_12524414.1| ribosome-binding factor A [Acinetobacter baumannii ABNIH3]
gi|417881980|ref|ZP_12526288.1| ribosome-binding factor A [Acinetobacter baumannii ABNIH4]
gi|421202493|ref|ZP_15659641.1| ribosome-binding factor A [Acinetobacter baumannii AC12]
gi|421534965|ref|ZP_15981232.1| ribosome-binding factor A [Acinetobacter baumannii AC30]
gi|421630737|ref|ZP_16071438.1| ribosome-binding factor A [Acinetobacter baumannii OIFC180]
gi|421662342|ref|ZP_16102510.1| ribosome-binding factor A [Acinetobacter baumannii OIFC110]
gi|421688244|ref|ZP_16127944.1| ribosome-binding factor A [Acinetobacter baumannii IS-143]
gi|421702074|ref|ZP_16141559.1| ribosome-binding factor A [Acinetobacter baumannii ZWS1122]
gi|421705813|ref|ZP_16145234.1| ribosome-binding factor A [Acinetobacter baumannii ZWS1219]
gi|421792359|ref|ZP_16228514.1| ribosome-binding factor A [Acinetobacter baumannii Naval-2]
gi|424053902|ref|ZP_17791433.1| ribosome-binding factor A [Acinetobacter baumannii Ab11111]
gi|424064838|ref|ZP_17802322.1| ribosome-binding factor A [Acinetobacter baumannii Ab44444]
gi|425751471|ref|ZP_18869416.1| ribosome-binding factor A [Acinetobacter baumannii Naval-113]
gi|445465132|ref|ZP_21449910.1| ribosome-binding factor A [Acinetobacter baumannii OIFC338]
gi|445481555|ref|ZP_21455999.1| ribosome-binding factor A [Acinetobacter baumannii Naval-78]
gi|238691022|sp|B2I2M8.1|RBFA_ACIBC RecName: Full=Ribosome-binding factor A
gi|183208265|gb|ACC55663.1| Ribosome-binding factor A [Acinetobacter baumannii ACICU]
gi|322506558|gb|ADX02012.1| rbfA [Acinetobacter baumannii 1656-2]
gi|323516437|gb|ADX90818.1| ribosome-binding factor A [Acinetobacter baumannii TCDC-AB0715]
gi|332738591|gb|EGJ69461.1| ribosome-binding factor A [Acinetobacter baumannii 6014059]
gi|333365760|gb|EGK47774.1| ribosome-binding factor A [Acinetobacter baumannii AB210]
gi|342224997|gb|EGT90007.1| ribosome-binding factor A [Acinetobacter baumannii ABNIH2]
gi|342226300|gb|EGT91273.1| ribosome-binding factor A [Acinetobacter baumannii ABNIH1]
gi|342227293|gb|EGT92228.1| ribosome-binding factor A [Acinetobacter baumannii ABNIH3]
gi|342238229|gb|EGU02662.1| ribosome-binding factor A [Acinetobacter baumannii ABNIH4]
gi|347592118|gb|AEP04839.1| ribosome-binding factor A [Acinetobacter baumannii MDR-ZJ06]
gi|385879907|gb|AFI97002.1| ribosome-binding factor A [Acinetobacter baumannii MDR-TJ]
gi|395550655|gb|EJG16664.1| ribosome-binding factor A [Acinetobacter baumannii OIFC189]
gi|395570411|gb|EJG31073.1| ribosome-binding factor A [Acinetobacter baumannii Naval-17]
gi|398327876|gb|EJN44006.1| ribosome-binding factor A [Acinetobacter baumannii AC12]
gi|404560987|gb|EKA66223.1| ribosome-binding factor A [Acinetobacter baumannii IS-143]
gi|404667388|gb|EKB35309.1| ribosome-binding factor A [Acinetobacter baumannii Ab11111]
gi|404672921|gb|EKB40725.1| ribosome-binding factor A [Acinetobacter baumannii Ab44444]
gi|407194837|gb|EKE65973.1| ribosome-binding factor A [Acinetobacter baumannii ZWS1122]
gi|407195226|gb|EKE66360.1| ribosome-binding factor A [Acinetobacter baumannii ZWS1219]
gi|407899857|gb|AFU36688.1| ribosome-binding factor A [Acinetobacter baumannii TYTH-1]
gi|408697123|gb|EKL42643.1| ribosome-binding factor A [Acinetobacter baumannii OIFC180]
gi|408715145|gb|EKL60275.1| ribosome-binding factor A [Acinetobacter baumannii OIFC110]
gi|409987113|gb|EKO43299.1| ribosome-binding factor A [Acinetobacter baumannii AC30]
gi|410400666|gb|EKP52834.1| ribosome-binding factor A [Acinetobacter baumannii Naval-2]
gi|425499918|gb|EKU65946.1| ribosome-binding factor A [Acinetobacter baumannii Naval-113]
gi|444770347|gb|ELW94504.1| ribosome-binding factor A [Acinetobacter baumannii Naval-78]
gi|444779264|gb|ELX03258.1| ribosome-binding factor A [Acinetobacter baumannii OIFC338]
Length = 133
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 77/146 (52%), Gaps = 20/146 (13%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA +R+K +A +QRELS+++ + L + LG L TIS V+VS DL
Sbjct: 1 MAGGQRLKRMADSVQRELSELIRQE-------LKDPRLGG------LVTISGVKVSPDLG 47
Query: 124 VVKVYVSVFG---DDRGKEVA----IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESF 176
VYV+V G D EVA + L + ++R +L RR+K R+TP +RF D++
Sbjct: 48 YADVYVTVMGRELSDDQNEVAHRETLDILNKASGFLRQELSRRIKTRITPRLRFHYDKTN 107
Query: 177 ERGSRVIAILDRIKAEKEAAKSKNKE 202
G+ + ++++ + +S +KE
Sbjct: 108 AYGNYMFGLIEKAVQDLPKRESDDKE 133
>gi|398848257|ref|ZP_10605082.1| ribosome-binding factor A [Pseudomonas sp. GM84]
gi|398249073|gb|EJN34466.1| ribosome-binding factor A [Pseudomonas sp. GM84]
Length = 132
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 70/126 (55%), Gaps = 16/126 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL++++ + + + +G L TI+ V+VS DL KV+
Sbjct: 7 RTQRIGDQMQRELAELIRRE-------VKDPRVG-------LVTITAVDVSRDLGHAKVF 52
Query: 129 VSVFGDDRGKEV--AIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
++V G++ V ++ L S A ++R LGR M+LR P++ F DES RG + A++
Sbjct: 53 ITVMGEETPDAVQQSLKALNSAASFLRLHLGRSMQLRSVPQLHFHFDESVSRGVHLSALI 112
Query: 187 DRIKAE 192
+R AE
Sbjct: 113 ERAVAE 118
>gi|160876522|ref|YP_001555838.1| ribosome-binding factor A [Shewanella baltica OS195]
gi|160862044|gb|ABX50578.1| ribosome-binding factor A [Shewanella baltica OS195]
Length = 157
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 67/119 (56%), Gaps = 8/119 (6%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGK-EVAIAGLKSKAKYVRSQLGRRMKLRLTPE 167
T++DV+VS DL KV+V+ F +D+ + + L S A Y+R+ + RMKLR+ PE
Sbjct: 38 GFVTVNDVDVSRDLSYAKVFVTFFEEDKAVVQEKLNALISAAPYIRTLVAGRMKLRVMPE 97
Query: 168 IRFIEDESFERGSRVIAILDRIKAEKEAAKSKNKEQFESPDLP-EDE--RDWEGDDPDE 223
+RFI D S G R+ ++ ++ + +A ++QF S + EDE D DD DE
Sbjct: 98 LRFIYDSSLVEGMRMSNLVSQVINQDKA----KQQQFGSEEASVEDEVLGDDVADDADE 152
>gi|119470823|ref|ZP_01613434.1| ribosome-binding factor A, role in processing of 16S rRNA
[Alteromonadales bacterium TW-7]
gi|392537108|ref|ZP_10284245.1| ribosome-binding factor A, role in processing of 16S rRNA
[Pseudoalteromonas marina mano4]
gi|119446050|gb|EAW27329.1| ribosome-binding factor A, role in processing of 16S rRNA
[Alteromonadales bacterium TW-7]
Length = 148
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 69/130 (53%), Gaps = 18/130 (13%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R V +QIQ+E++ +L + + + LG + T+S VEVS DL K++
Sbjct: 6 RTDRVGQQIQKEIAVILQRE-------IKDPRLG-------MVTVSAVEVSRDLSYAKIF 51
Query: 129 VSVFG---DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
++VF +D K+ A L Y+RS LG+R++ R+ PE++F+ D S G R+ +
Sbjct: 52 ITVFNTKDEDAAKQSAKV-LNEATGYIRSLLGKRIRARIMPELKFVVDNSLMEGMRISNL 110
Query: 186 LDRIKAEKEA 195
+D I E A
Sbjct: 111 VDTIIREDNA 120
>gi|424792145|ref|ZP_18218406.1| ribosomal-binding factor A [Xanthomonas translucens pv. graminis
ART-Xtg29]
gi|422797204|gb|EKU25575.1| ribosomal-binding factor A [Xanthomonas translucens pv. graminis
ART-Xtg29]
Length = 133
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 65/118 (55%), Gaps = 15/118 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R V+ QI+R+L ++ AV D L S++ +SDVEV+ DL KV+
Sbjct: 8 RTDRVSAQIRRDLG------TIVHSAV-------RDHGLPSVS-VSDVEVTRDLAHAKVF 53
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
V+ +R E A+ GLK A +RS+L R MKLR PE+ F D+S +RG R+ +L
Sbjct: 54 VTALLPERSVE-AVKGLKELAPQLRSELARAMKLRHVPELHFHYDDSVDRGERIDNLL 110
>gi|333983006|ref|YP_004512216.1| Ribosome-binding factor A [Methylomonas methanica MC09]
gi|333807047|gb|AEF99716.1| Ribosome-binding factor A [Methylomonas methanica MC09]
Length = 133
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 73/138 (52%), Gaps = 17/138 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + VA Q+Q+EL+ +L D DR + T+++V +S DL V K+Y
Sbjct: 7 RSQRVASQMQKELALILQRDV-------------HDRRVG-FVTVNEVVLSKDLAVAKIY 52
Query: 129 VSVF-GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
++V D+ GK + L + ++R +L +RM+LR E+ F+ D SF+ G RV +L
Sbjct: 53 ITVLNADEAGKLANVKALNEISPFIRHELAKRMRLRHISELHFLYDHSFDTGMRVSQLLH 112
Query: 188 RIK--AEKEAAKSKNKEQ 203
+ A+ +A ++ + Q
Sbjct: 113 EVNDGADADAGETDDNPQ 130
>gi|417643562|ref|ZP_12293604.1| ribosome-binding factor A [Staphylococcus warneri VCU121]
gi|330685669|gb|EGG97310.1| ribosome-binding factor A [Staphylococcus epidermidis VCU121]
Length = 116
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 64/114 (56%), Gaps = 14/114 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + V +Q+++E+ D ++ +KV V TI+DVE++ DL KVY
Sbjct: 5 RAERVGEQMKKEIMD-IVNNKVKDPRV-------------GFITITDVELTNDLSQGKVY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
++V G+ + + L+ +++S+LG RM+LR+ PE+ F DES E G+++
Sbjct: 51 LTVLGNQKEVDNTFKALEKAKGFIKSELGSRMRLRIIPELSFEYDESIEYGNKI 104
>gi|39996689|ref|NP_952640.1| ribosome-binding factor A [Geobacter sulfurreducens PCA]
gi|409912110|ref|YP_006890575.1| ribosome-binding factor A [Geobacter sulfurreducens KN400]
gi|61215118|sp|Q74CT2.1|RBFA_GEOSL RecName: Full=Ribosome-binding factor A
gi|39983570|gb|AAR34963.1| ribosome-binding factor A [Geobacter sulfurreducens PCA]
gi|298505700|gb|ADI84423.1| ribosome-binding factor A [Geobacter sulfurreducens KN400]
Length = 118
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 51/85 (60%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEI 168
TI+ V+V+ D++ +Y +V GDD + GL S ++R ++G++++L+ PE+
Sbjct: 30 GFITITGVKVTDDIRQATIYYTVMGDDEARVSTARGLASATGFLRREIGKQLRLKFAPEL 89
Query: 169 RFIEDESFERGSRVIAILDRIKAEK 193
F D+S E G+R+ +L I+ EK
Sbjct: 90 HFKYDQSIEYGNRIDQLLKEIETEK 114
>gi|255066483|ref|ZP_05318338.1| ribosome-binding factor A [Neisseria sicca ATCC 29256]
gi|255049363|gb|EET44827.1| ribosome-binding factor A [Neisseria sicca ATCC 29256]
Length = 123
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 72/136 (52%), Gaps = 18/136 (13%)
Query: 58 RKTVKCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVE 117
RK + A RVK +QI REL++++ T G + TI++VE
Sbjct: 2 RKLQRGYARQDRVK---EQIMRELAELVRT--------------GLKDPRAGFITINEVE 44
Query: 118 VSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFE 177
V+ D V+ +V DD +++ L+ ++RS+L +R+KL TPE+ F DES E
Sbjct: 45 VTRDYSHATVFYTVL-DDSTRDITEEALEHAKGHLRSELAKRIKLFKTPELHFKYDESLE 103
Query: 178 RGSRVIAILDRIKAEK 193
RG + +++D++ AEK
Sbjct: 104 RGMSISSLIDQVAAEK 119
>gi|241760044|ref|ZP_04758142.1| ribosome-binding factor A [Neisseria flavescens SK114]
gi|261364591|ref|ZP_05977474.1| ribosome-binding factor A [Neisseria mucosa ATCC 25996]
gi|261381125|ref|ZP_05985698.1| ribosome-binding factor A [Neisseria subflava NJ9703]
gi|319637963|ref|ZP_07992729.1| ribosome-binding factor A [Neisseria mucosa C102]
gi|340363140|ref|ZP_08685489.1| ribosome-binding factor A [Neisseria macacae ATCC 33926]
gi|349610014|ref|ZP_08889376.1| ribosome-binding factor A [Neisseria sp. GT4A_CT1]
gi|241319498|gb|EER55928.1| ribosome-binding factor A [Neisseria flavescens SK114]
gi|284795927|gb|EFC51274.1| ribosome-binding factor A [Neisseria subflava NJ9703]
gi|288567175|gb|EFC88735.1| ribosome-binding factor A [Neisseria mucosa ATCC 25996]
gi|317401118|gb|EFV81773.1| ribosome-binding factor A [Neisseria mucosa C102]
gi|339886591|gb|EGQ76235.1| ribosome-binding factor A [Neisseria macacae ATCC 33926]
gi|348610784|gb|EGY60466.1| ribosome-binding factor A [Neisseria sp. GT4A_CT1]
Length = 123
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 72/136 (52%), Gaps = 18/136 (13%)
Query: 58 RKTVKCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVE 117
RK + A RVK +QI REL++++ T G + TI++VE
Sbjct: 2 RKPQRGYARQDRVK---EQIMRELAELVRT--------------GLKDPRAGFITINEVE 44
Query: 118 VSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFE 177
V+ D V+ +V DD +++ L+ ++RS+L +R+KL TPE+ F DES E
Sbjct: 45 VTRDYSHATVFYTVL-DDSTRDITEEALEHAKGHLRSELAKRIKLFKTPELHFKYDESLE 103
Query: 178 RGSRVIAILDRIKAEK 193
RG + +++D++ AEK
Sbjct: 104 RGMSISSLIDQVAAEK 119
>gi|88812959|ref|ZP_01128202.1| ribosome-binding factor A [Nitrococcus mobilis Nb-231]
gi|88789737|gb|EAR20861.1| ribosome-binding factor A [Nitrococcus mobilis Nb-231]
Length = 114
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 70/127 (55%), Gaps = 21/127 (16%)
Query: 73 VAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYV 129
+++QIQREL+ ++ L+D P AL T+S+V +S D+ V V
Sbjct: 1 MSEQIQRELAQLIRRELSD--------PRVALA---------TVSEVRLSRDMAYADVLV 43
Query: 130 SVFGDDRGK-EVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+ G R + + A+A L A+++R LG+ ++LR P +RF D+SFER +RV ++D
Sbjct: 44 TRLGAQREESQQAVAALNHAARHLRGLLGQSLRLRAVPALRFHYDDSFERSARVSHLIDA 103
Query: 189 IKAEKEA 195
AE +A
Sbjct: 104 AVAEDKA 110
>gi|378709727|ref|YP_005274621.1| ribosome-binding factor A [Shewanella baltica OS678]
gi|418025544|ref|ZP_12664522.1| Ribosome-binding factor A [Shewanella baltica OS625]
gi|189039674|sp|A9KZX0.2|RBFA_SHEB9 RecName: Full=Ribosome-binding factor A
gi|315268716|gb|ADT95569.1| ribosome-binding factor A [Shewanella baltica OS678]
gi|353535156|gb|EHC04720.1| Ribosome-binding factor A [Shewanella baltica OS625]
Length = 152
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 67/119 (56%), Gaps = 8/119 (6%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGK-EVAIAGLKSKAKYVRSQLGRRMKLRLTPE 167
T++DV+VS DL KV+V+ F +D+ + + L S A Y+R+ + RMKLR+ PE
Sbjct: 33 GFVTVNDVDVSRDLSYAKVFVTFFEEDKAVVQEKLNALISAAPYIRTLVAGRMKLRVMPE 92
Query: 168 IRFIEDESFERGSRVIAILDRIKAEKEAAKSKNKEQFESPDLP-EDE--RDWEGDDPDE 223
+RFI D S G R+ ++ ++ + +A ++QF S + EDE D DD DE
Sbjct: 93 LRFIYDSSLVEGMRMSNLVSQVINQDKA----KQQQFGSEEASVEDEVLGDDVADDADE 147
>gi|419796037|ref|ZP_14321608.1| ribosome-binding factor A [Neisseria sicca VK64]
gi|385699888|gb|EIG30154.1| ribosome-binding factor A [Neisseria sicca VK64]
Length = 123
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 72/136 (52%), Gaps = 18/136 (13%)
Query: 58 RKTVKCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVE 117
RK + A RVK +QI REL++++ T G + TI++VE
Sbjct: 2 RKPQRGYARQDRVK---EQIMRELAELVRT--------------GLKDPRAGFITINEVE 44
Query: 118 VSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFE 177
V+ D V+ +V DD +++ L+ ++RS+L +R+KL TPE+ F DES E
Sbjct: 45 VTRDYSHATVFYTVL-DDSTRDITEEALEHAKGHLRSELAKRIKLFKTPELHFKYDESLE 103
Query: 178 RGSRVIAILDRIKAEK 193
RG + +++D++ AEK
Sbjct: 104 RGMSISSLIDQVAAEK 119
>gi|121998527|ref|YP_001003314.1| ribosome-binding factor A [Halorhodospira halophila SL1]
gi|166218443|sp|A1WXV0.1|RBFA_HALHL RecName: Full=Ribosome-binding factor A
gi|121589932|gb|ABM62512.1| ribosome-binding factor A [Halorhodospira halophila SL1]
Length = 126
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 75/122 (61%), Gaps = 15/122 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + +A+Q++REL++++ D + + +G+ TIS+V+VS DL VY
Sbjct: 7 RSRRIAEQLRRELAEVIRDD-------VDDPRVGS-------VTISEVQVSRDLAHATVY 52
Query: 129 VSVFGDDRGKEVAIAGLKSKA-KYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
V+V G + + A + +KA ++RSQ+ RR++ + TP +RF+ D +F+RG+R+ A++D
Sbjct: 53 VTVLGAEAAEAQAGIDILNKAHGFLRSQVARRIRAKRTPSLRFLHDTAFDRGARLSALID 112
Query: 188 RI 189
+
Sbjct: 113 EV 114
>gi|392419899|ref|YP_006456503.1| ribosome-binding factor A [Pseudomonas stutzeri CCUG 29243]
gi|390982087|gb|AFM32080.1| ribosome-binding factor A [Pseudomonas stutzeri CCUG 29243]
Length = 129
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 69/128 (53%), Gaps = 19/128 (14%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ D + + LG L TI+ V+VS DL K++
Sbjct: 7 RTQRIGDQMQRELALLIQRD-------IKDPRLG-------LITITAVDVSRDLSHAKIF 52
Query: 129 VSVFGDDRGKEVAIAG----LKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIA 184
+++ G D +E A+ G L A ++R QLG+ MKLR P++ F D S RG + +
Sbjct: 53 ITIMGQDDDQE-AVKGNLRILNDAAGFLRMQLGKSMKLRTVPQLHFNYDASIRRGVELSS 111
Query: 185 ILDRIKAE 192
+++R AE
Sbjct: 112 LIERAVAE 119
>gi|219682289|ref|YP_002468673.1| ribosome-binding factor A [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|384226179|ref|YP_005617342.1| ribosome-binding factor A [Buchnera aphidicola str. TLW03
(Acyrthosiphon pisum)]
gi|384227237|ref|YP_005618987.1| ribosome-binding factor A [Buchnera aphidicola str. LL01
(Acyrthosiphon pisum)]
gi|254789738|sp|B8D7R3.1|RBFA_BUCAT RecName: Full=Ribosome-binding factor A
gi|219622022|gb|ACL30178.1| ribosome-binding factor A [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|311086113|gb|ADP66195.1| ribosome-binding factor A [Buchnera aphidicola str. LL01
(Acyrthosiphon pisum)]
gi|311086686|gb|ADP66767.1| ribosome-binding factor A [Buchnera aphidicola str. TLW03
(Acyrthosiphon pisum)]
Length = 119
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMK 161
D + ++ T+S+V+VS DL +++VS D ++V I L + Y+R L +RMK
Sbjct: 29 DPRIKTIITVSEVQVSKDLSYAQIFVSFLESDNNEKVKKKITLLNRASSYIRKLLCKRMK 88
Query: 162 LRLTPEIRFIEDESFERGSRVIAILDRI 189
LR+ P I F D+SF +G+++ IL+ +
Sbjct: 89 LRIVPNIIFHHDDSFLKGNKISCILENL 116
>gi|333901766|ref|YP_004475639.1| ribosome-binding factor A [Pseudomonas fulva 12-X]
gi|333117031|gb|AEF23545.1| Ribosome-binding factor A [Pseudomonas fulva 12-X]
Length = 135
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 67/129 (51%), Gaps = 18/129 (13%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + QIQREL+ ++ T+ D L L T++ V+VS D KV+
Sbjct: 7 RAQRIGDQIQRELAQLIRTEV-------------KDPRLGGLVTVTAVDVSRDASHAKVF 53
Query: 129 VSVFGDD--RGKEVAIAGLK---SKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
V+V G + G + LK + ++R QLG+ MKLR P +RF DES RG+++
Sbjct: 54 VTVMGAEPQEGSDPIAQSLKVLNDASGFLRMQLGKAMKLRSVPHLRFHYDESIVRGAQLS 113
Query: 184 AILDRIKAE 192
A+++R E
Sbjct: 114 ALIERAVTE 122
>gi|407699866|ref|YP_006824653.1| ribosome-binding factor A [Alteromonas macleodii str. 'Black Sea
11']
gi|407249013|gb|AFT78198.1| ribosome-binding factor A [Alteromonas macleodii str. 'Black Sea
11']
Length = 133
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 75/137 (54%), Gaps = 15/137 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R VA+Q+ +E++ +L + + +P L T+SDV+VS DL K++
Sbjct: 7 RTDRVAQQVHKEVASILQNEYKHRVGDMP------------LITVSDVDVSRDLAHAKIF 54
Query: 129 VSVFG--DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
V+++ ++ GK I L K++RS L +R+++R P++ F ED+S G R+ ++
Sbjct: 55 VTIYNSTEEEGK-AQIKQLAEYKKFIRSILAKRIRMRSVPDLHFFEDKSIVEGMRISNLV 113
Query: 187 DRIKAEKEAAKSKNKEQ 203
+ A+ E+ + K++ Q
Sbjct: 114 SQTIAKDESKRDKDESQ 130
>gi|325266651|ref|ZP_08133328.1| ribosome-binding factor A [Kingella denitrificans ATCC 33394]
gi|324982094|gb|EGC17729.1| ribosome-binding factor A [Kingella denitrificans ATCC 33394]
Length = 123
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 65/125 (52%), Gaps = 16/125 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R+ V +Q+ REL++++ T+ L + G TI+DVEVS D VY
Sbjct: 11 RIDRVKEQVMRELAELVRTE-------LKDPRAG-------FITINDVEVSRDYSHATVY 56
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+V DR + L+ ++RS+L RR+ + TPE+ F DES ERG + ++D+
Sbjct: 57 YTVLNGDRA--ASAQALEKAKGFLRSELSRRITVFRTPELHFEYDESLERGVNLSQLIDQ 114
Query: 189 IKAEK 193
AEK
Sbjct: 115 AAAEK 119
>gi|386314679|ref|YP_006010844.1| ribosome-binding factor A [Shewanella putrefaciens 200]
gi|319427304|gb|ADV55378.1| ribosome-binding factor A [Shewanella putrefaciens 200]
Length = 149
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 59/101 (58%), Gaps = 5/101 (4%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGK-EVAIAGLKSKAKYVRSQLGRRMKLRLTPE 167
T++DV+VS DL KV+V+ F +D+ + + L S A Y+R+ + RMKLR+ PE
Sbjct: 33 GFVTVNDVDVSRDLSYAKVFVTFFEEDKAVVQEKLNALISAAPYIRTLVAGRMKLRVMPE 92
Query: 168 IRFIEDESFERGSRVIAILDRIKAEKEAAKSKNKEQFESPD 208
+RF+ D S G R+ ++ ++ + +A ++QF S D
Sbjct: 93 LRFVYDSSLVEGMRMSNLVSQVINQDKA----KQQQFGSAD 129
>gi|381151072|ref|ZP_09862941.1| ribosome-binding factor A [Methylomicrobium album BG8]
gi|380883044|gb|EIC28921.1| ribosome-binding factor A [Methylomicrobium album BG8]
Length = 124
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 15/118 (12%)
Query: 73 VAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVF 132
VA ++Q+ELS +L V+ ++ LG TI++V+++ DL + K+Y +V
Sbjct: 11 VASEMQKELSFILQR-------VVKDSRLG-------FITINEVDLTKDLALAKIYFTVL 56
Query: 133 -GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRI 189
D+ GK + L A +R +L +RM+LR E+RFI D+SF+ G RV +L I
Sbjct: 57 NADEAGKRNHVKRLNQLAPVIRHELAKRMRLRHISELRFIYDDSFDTGMRVAELLSDI 114
>gi|332141183|ref|YP_004426921.1| ribosome-binding factor A [Alteromonas macleodii str. 'Deep
ecotype']
gi|410861487|ref|YP_006976721.1| ribosome-binding factor A [Alteromonas macleodii AltDE1]
gi|238693266|sp|B4RXT9.1|RBFA_ALTMD RecName: Full=Ribosome-binding factor A
gi|327551205|gb|AEA97923.1| ribosome-binding factor A [Alteromonas macleodii str. 'Deep
ecotype']
gi|410818749|gb|AFV85366.1| ribosome-binding factor A [Alteromonas macleodii AltDE1]
Length = 133
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 75/137 (54%), Gaps = 15/137 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R VA+Q+ +E++ +L + + +P L T+SDV+VS DL K++
Sbjct: 7 RTDRVAQQVHKEVASILQNEYKHRVGDMP------------LITVSDVDVSRDLAHAKIF 54
Query: 129 VSVFG--DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
V+++ ++ GK V I L K++RS L +R+++R P++ F ED+S G R+ ++
Sbjct: 55 VTIYNSTEEEGK-VQIKQLAEYKKFIRSILAKRLRMRSVPDLHFFEDKSIIEGMRISNLV 113
Query: 187 DRIKAEKEAAKSKNKEQ 203
+ A+ E+ + ++ Q
Sbjct: 114 SQTIAKDESKRDQDDSQ 130
>gi|409396338|ref|ZP_11247341.1| ribosome-binding factor A [Pseudomonas sp. Chol1]
gi|409119115|gb|EKM95502.1| ribosome-binding factor A [Pseudomonas sp. Chol1]
Length = 129
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 69/128 (53%), Gaps = 19/128 (14%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + LG L TI+ V+VS DL K++
Sbjct: 7 RTQRIGDQMQRELAQLIQRE-------IKDPRLG-------LVTITGVDVSRDLSHAKIF 52
Query: 129 VSVFGDDRGKEVAIAG----LKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIA 184
+++ G D +E A+ G L A ++R QLG+ MKLR P++ F D S RG + +
Sbjct: 53 ITIMGQDDNEE-AVRGNLRILNEAAGFLRMQLGKSMKLRSVPQLHFNYDASIRRGVELSS 111
Query: 185 ILDRIKAE 192
+++R AE
Sbjct: 112 LIERAVAE 119
>gi|167856180|ref|ZP_02478918.1| ribosome-binding factor A [Haemophilus parasuis 29755]
gi|167852702|gb|EDS23978.1| ribosome-binding factor A [Haemophilus parasuis 29755]
Length = 127
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVF--GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTP 166
+ T+SDVE+S DL KV+V+ D+ E + GL + Y+R+ +G+ M+LR+ P
Sbjct: 33 GMVTVSDVEISRDLAYAKVFVTFLFDSDESAVERGLEGLNKASGYIRTLVGKAMRLRIVP 92
Query: 167 EIRFIEDESFERGSRV 182
E+RF+ D+S G R+
Sbjct: 93 ELRFVYDQSLVEGMRM 108
>gi|298368699|ref|ZP_06980017.1| ribosome-binding factor A [Neisseria sp. oral taxon 014 str. F0314]
gi|298282702|gb|EFI24189.1| ribosome-binding factor A [Neisseria sp. oral taxon 014 str. F0314]
Length = 123
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 72/136 (52%), Gaps = 18/136 (13%)
Query: 58 RKTVKCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVE 117
RK + A RVK +QI REL++++ T G + TI++VE
Sbjct: 2 RKPQRGYARQDRVK---EQIMRELAELVRT--------------GLKDPRAGFITINEVE 44
Query: 118 VSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFE 177
V+ D V+ +V DD +++ L+ ++RS+L +R+KL TPE+ F DES E
Sbjct: 45 VTRDYSHATVFYTVL-DDSTRDITEEALEHAKGHLRSELAKRIKLFKTPELHFKYDESLE 103
Query: 178 RGSRVIAILDRIKAEK 193
RG + +++D++ AEK
Sbjct: 104 RGMSISSLIDQVAAEK 119
>gi|409407357|ref|ZP_11255808.1| ribosome-binding factor A protein [Herbaspirillum sp. GW103]
gi|386433108|gb|EIJ45934.1| ribosome-binding factor A protein [Herbaspirillum sp. GW103]
Length = 130
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 72/137 (52%), Gaps = 17/137 (12%)
Query: 67 PRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVK 126
P R VA QIQR+LS+++ + L + +G + TI++V+V+ D K
Sbjct: 9 PGRGLRVADQIQRDLSELIAFE-------LKDPRVG-------MITITEVQVTPDYAHAK 54
Query: 127 VYVSVFGDD-RGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
V+ + D+ + +AGL++ Y+R+QLGRR+ + PE+ F+ D S RG + +
Sbjct: 55 VFFTTLVDNPDAIKNTLAGLRAAGGYLRTQLGRRLTIHTLPELHFVHDNSTARGIEMSRL 114
Query: 186 LDRIKAEKEAAKSKNKE 202
+D A + AK + E
Sbjct: 115 IDEANATR--AKDSDDE 129
>gi|15616981|ref|NP_240194.1| ribosome-binding factor A [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219681734|ref|YP_002468120.1| ribosome-binding factor A [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|257471434|ref|ZP_05635433.1| ribosome-binding factor A [Buchnera aphidicola str. LSR1
(Acyrthosiphon pisum)]
gi|11387026|sp|P57457.1|RBFA_BUCAI RecName: Full=Ribosome-binding factor A
gi|254789737|sp|B8D9G1.1|RBFA_BUCA5 RecName: Full=Ribosome-binding factor A
gi|25302100|pir||H84973 ribosome-binding factor A [imported] - Buchnera sp. (strain APS)
gi|10039046|dbj|BAB13080.1| ribosome-binding factor A [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219624577|gb|ACL30732.1| ribosome-binding factor A [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
Length = 120
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVA--IAGLKSKAKYVRSQLGRRMK 161
D + ++ T+S+V+VS DL +++VS D ++V I L + Y+R L +RMK
Sbjct: 29 DPRIKTIITVSEVQVSKDLSYAQIFVSFLESDNNEKVKKKITILNRASSYIRKLLCKRMK 88
Query: 162 LRLTPEIRFIEDESFERGSRVIAILDRI 189
LR+ P I F D+SF +G+++ IL+ +
Sbjct: 89 LRIVPNIIFHHDDSFLKGNKISCILENL 116
>gi|253997784|ref|YP_003049847.1| ribosome-binding factor A [Methylovorus glucosetrophus SIP3-4]
gi|253984463|gb|ACT49320.1| ribosome-binding factor A [Methylovorus glucosetrophus SIP3-4]
Length = 123
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 70/126 (55%), Gaps = 17/126 (13%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R +A+Q+QREL+D+L QF V + +G + T+++VEVS DL KV+
Sbjct: 7 RSDRIAEQMQRELADLL------QFEV-KDPRVG-------MVTVTEVEVSGDLAHAKVF 52
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
S ++G GL+ A ++RSQL +R+ LR P++ F+ D S + G ++ ++D
Sbjct: 53 YSA---EKGTPELQKGLEKTAGFLRSQLAKRLLLRTVPQLHFVYDASIDNGMKISRLIDD 109
Query: 189 IKAEKE 194
A+ +
Sbjct: 110 ALAQDQ 115
>gi|262377019|ref|ZP_06070245.1| ribosome-binding factor A [Acinetobacter lwoffii SH145]
gi|262308057|gb|EEY89194.1| ribosome-binding factor A [Acinetobacter lwoffii SH145]
gi|407009650|gb|EKE24739.1| Ribosome-binding factor A [uncultured bacterium]
Length = 134
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 78/147 (53%), Gaps = 21/147 (14%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA +R+K +A +QRELS+++ + L + LG L TIS V+VS DL
Sbjct: 1 MAGSQRLKRMADTVQRELSELIRQE-------LKDPRLGG------LVTISAVKVSPDLG 47
Query: 124 VVKVYVSVFGDDRGKEVA-------IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESF 176
+VYV+V G + G E + + L + ++R +L RR+K R+TP +RF D++
Sbjct: 48 YAEVYVTVMGRELGDEQSQEANKETLDVLNKASGFLRHELSRRIKTRITPRLRFHYDKTN 107
Query: 177 ERGSRVIAIL-DRIKAEKEAAKSKNKE 202
G+ + ++ + +K EA K+ E
Sbjct: 108 AYGNYMFGLIAEAVKDLPEAEAKKDDE 134
>gi|209694191|ref|YP_002262119.1| ribosome-binding factor A [Aliivibrio salmonicida LFI1238]
gi|226723591|sp|B6ENE3.1|RBFA_ALISL RecName: Full=Ribosome-binding factor A
gi|208008142|emb|CAQ78284.1| ribosome-binding factor A [Aliivibrio salmonicida LFI1238]
Length = 135
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 65/115 (56%), Gaps = 15/115 (13%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + V++Q+Q+EL+ +L + + ++ +G + TISDVEVS DL KV+
Sbjct: 7 RAQRVSQQLQKELAVILQRE-------VRDSRIG-------MVTISDVEVSRDLAYAKVF 52
Query: 129 VSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
V+ F ++ E +A LK VR LG+R++ RLTPE+RF D + G R+
Sbjct: 53 VTFFCVGEQTPETCLAALKEHEVPVRMMLGKRIRHRLTPEVRFTYDNTLVEGMRM 107
>gi|219870868|ref|YP_002475243.1| ribosome-binding factor A [Haemophilus parasuis SH0165]
gi|254789752|sp|B8F4P3.1|RBFA_HAEPS RecName: Full=Ribosome-binding factor A
gi|219691072|gb|ACL32295.1| ribosome-binding factor A [Haemophilus parasuis SH0165]
Length = 127
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVF--GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTP 166
+ T+SDVE+S DL KV+V+ D+ E + GL + Y+R+ +G+ M+LR+ P
Sbjct: 33 GMVTVSDVEISRDLAYAKVFVTFLFDSDESAVERGLEGLNKASGYIRTLVGKAMRLRIVP 92
Query: 167 EIRFIEDESFERGSRV 182
E+RF+ D+S G R+
Sbjct: 93 ELRFVYDQSLVEGMRM 108
>gi|33860672|ref|NP_892233.1| ribosome-binding factor A [Prochlorococcus marinus subsp. pastoris
str. CCMP1986]
gi|39931780|sp|Q7V3G3.1|RBFA_PROMP RecName: Full=Ribosome-binding factor A
gi|33633614|emb|CAE18571.1| Ribosome-binding factor A [Prochlorococcus marinus subsp. pastoris
str. CCMP1986]
Length = 132
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 69/136 (50%), Gaps = 12/136 (8%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
M N R+ ++ +++E++ +L D L D S+ IS +E+S DLQ
Sbjct: 1 MPNNYRIAKISSLLKKEITLILQND------------LENDLLRSNFINISKIELSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K+Y++ ++ ++ + L Y+R LG+R+++R PE+ F +D E+G V+
Sbjct: 49 FCKIYITSTAEEAIRKEIVEELNLAKTYIRHTLGQRIEMRRVPEMTFKDDTVLEKGLSVL 108
Query: 184 AILDRIKAEKEAAKSK 199
+L +K +K SK
Sbjct: 109 KLLAELKNKKHNQDSK 124
>gi|330370601|gb|AEC12450.1| ribosome-binding factor A [Haemophilus parasuis str. Nagasaki]
Length = 127
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVF--GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTP 166
+ T+SDVE+S DL KV+V+ D+ E + GL + Y+R+ +G+ M+LR+ P
Sbjct: 33 GMVTVSDVEISRDLAYAKVFVTFLFDSDESAVERGLEGLNKASGYIRTLVGKAMRLRIVP 92
Query: 167 EIRFIEDESFERGSRV 182
E+RF+ D+S G R+
Sbjct: 93 ELRFVYDQSLVEGMRM 108
>gi|300312897|ref|YP_003776989.1| ribosome-binding factor A protein [Herbaspirillum seropedicae SmR1]
gi|300075682|gb|ADJ65081.1| ribosome-binding factor A protein [Herbaspirillum seropedicae SmR1]
Length = 130
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 67/128 (52%), Gaps = 15/128 (11%)
Query: 67 PRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVK 126
P R VA QIQR+LS+++ + L + +G + TI++V+V+ D K
Sbjct: 9 PGRGLRVADQIQRDLSELIAFE-------LKDPRVG-------MITITEVQVTPDYAHAK 54
Query: 127 VYVSVFGDD-RGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
V+ + D+ + +AGL+ Y+R+QLGRR+ + PE+ F+ D S RG + +
Sbjct: 55 VFFTTLVDNPEAIKNTLAGLRKAGGYLRTQLGRRLTIHTLPELHFVHDNSTARGIEMSRL 114
Query: 186 LDRIKAEK 193
+D A +
Sbjct: 115 IDEANATR 122
>gi|433676727|ref|ZP_20508802.1| Ribosome-binding factor A [Xanthomonas translucens pv. translucens
DSM 18974]
gi|430818155|emb|CCP39121.1| Ribosome-binding factor A [Xanthomonas translucens pv. translucens
DSM 18974]
Length = 133
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 65/118 (55%), Gaps = 15/118 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R V+ QI+R+L ++ AV D L S++ +SDVEV+ DL KV+
Sbjct: 8 RTDRVSAQIRRDLG------TIVHSAV-------RDHGLPSVS-VSDVEVTRDLAHAKVF 53
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
V+ +R E A+ GLK A +RS+L R MKLR PE+ F D+S +RG R+ +L
Sbjct: 54 VTALLPERSVE-AVKGLKELAPQLRSELARAMKLRHVPELHFHYDDSVDRGERIDNLL 110
>gi|293526627|ref|ZP_06671312.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
M1015]
gi|290920699|gb|EFD97762.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
M1015]
Length = 130
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 66/114 (57%), Gaps = 14/114 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + V +Q+++EL D ++ +KV + +G TI+DV ++ DL VKV+
Sbjct: 19 RAERVGEQMKKELMD-IINNKV------KDPRVG-------FITITDVVLTNDLSQVKVF 64
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
++V G+D+ E L +++S+LG RM+LR+ PE+ + D+S E G+++
Sbjct: 65 LTVLGNDKEVENTFKALDKAKGFIKSELGSRMRLRIMPELMYEYDQSIEYGNKI 118
>gi|189485239|ref|YP_001956180.1| ribosome-binding factor A [uncultured Termite group 1 bacterium
phylotype Rs-D17]
gi|170287198|dbj|BAG13719.1| ribosome-binding factor A [uncultured Termite group 1 bacterium
phylotype Rs-D17]
Length = 121
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 49/89 (55%)
Query: 108 SSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPE 167
+ L T+ ++ DL K+Y SV G + K+ LK K VR +L R+ LR TP
Sbjct: 31 AGLVTVMGANLTDDLLSCKIYYSVLGSEEYKKKVAGILKRSTKQVRHKLALRLNLRCTPT 90
Query: 168 IRFIEDESFERGSRVIAILDRIKAEKEAA 196
I F+ D+S ER ++V +L RI+ EK+
Sbjct: 91 ISFVYDDSNERATKVFDMLQRIEEEKDKC 119
>gi|404496449|ref|YP_006720555.1| ribosome-binding factor A [Geobacter metallireducens GS-15]
gi|418064825|ref|ZP_12702201.1| ribosome-binding factor A [Geobacter metallireducens RCH3]
gi|123571972|sp|Q39VA5.1|RBFA_GEOMG RecName: Full=Ribosome-binding factor A
gi|78194052|gb|ABB31819.1| ribosome-binding factor A [Geobacter metallireducens GS-15]
gi|373563098|gb|EHP89299.1| ribosome-binding factor A [Geobacter metallireducens RCH3]
Length = 118
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 50/85 (58%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEI 168
TI+ V+VS D++ +Y +V G D K+ + GL S ++R ++ + ++LR PE+
Sbjct: 30 GFVTITGVKVSDDIRHATIYYTVMGSDEAKKSTLHGLNSSVGFIRKEVSKELRLRFAPEL 89
Query: 169 RFIEDESFERGSRVIAILDRIKAEK 193
F DES E G+R+ +L I +E+
Sbjct: 90 IFKYDESIEYGNRIDQLLKEIGSEE 114
>gi|445495224|ref|ZP_21462268.1| ribosome-binding factor A [Janthinobacterium sp. HH01]
gi|444791385|gb|ELX12932.1| ribosome-binding factor A [Janthinobacterium sp. HH01]
Length = 138
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 69/123 (56%), Gaps = 15/123 (12%)
Query: 67 PRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVK 126
P+R + VA QIQR+LS+++ + L + +G + TI++V+V+ D K
Sbjct: 9 PQRGQRVADQIQRDLSEIIAFE-------LKDPRVG-------MITITEVQVTPDYAHAK 54
Query: 127 VYVSVFGDDRGK-EVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
++ ++ D + + + + GL + A Y+R QLG+R+ + P + F+ D S RG + A+
Sbjct: 55 IFFTMLKDSKEQVKQTVDGLSAAAGYMRGQLGKRLHIHTLPALHFVHDTSTARGMELSAL 114
Query: 186 LDR 188
+D+
Sbjct: 115 IDQ 117
>gi|153004010|ref|YP_001378335.1| ribosome-binding factor A [Anaeromyxobacter sp. Fw109-5]
gi|166218417|sp|A7H9F5.1|RBFA_ANADF RecName: Full=Ribosome-binding factor A
gi|152027583|gb|ABS25351.1| ribosome-binding factor A [Anaeromyxobacter sp. Fw109-5]
Length = 122
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 52/83 (62%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLR 163
D ++ T++ ++S DL+ V YVS+ +D +E + GLK+ + +++ ++ R ++LR
Sbjct: 28 DPRVTGFITVTGAKMSPDLKEVTAYVSIHAEDAERERTLEGLKAASTFLQREVARSLRLR 87
Query: 164 LTPEIRFIEDESFERGSRVIAIL 186
TP +RF+ DES RG R+ +L
Sbjct: 88 HTPHLRFVYDESVARGDRIERLL 110
>gi|350566728|ref|ZP_08935372.1| ribosome-binding factor A [Peptoniphilus indolicus ATCC 29427]
gi|348661886|gb|EGY78562.1| ribosome-binding factor A [Peptoniphilus indolicus ATCC 29427]
Length = 118
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 65/114 (57%), Gaps = 15/114 (13%)
Query: 66 NPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
N +R + ++++++R +SD V+Q + D + + ++S V+V+ DL
Sbjct: 2 NSKRTQQISEEVRRAISD------VIQNKL-------KDPRVPDIVSVSRVDVTNDLSFA 48
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERG 179
KVY+S F ++ E A+ G+ S +++ +L R +KLR PE+ FI D+S ERG
Sbjct: 49 KVYISFFTNE--VEEAMQGINSSKGFIKKELSRMIKLRAMPELIFIHDDSIERG 100
>gi|227510257|ref|ZP_03940306.1| ribosome-binding factor A [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
gi|227524401|ref|ZP_03954450.1| ribosome-binding factor A [Lactobacillus hilgardii ATCC 8290]
gi|227088632|gb|EEI23944.1| ribosome-binding factor A [Lactobacillus hilgardii ATCC 8290]
gi|227189909|gb|EEI69976.1| ribosome-binding factor A [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
Length = 116
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 21/128 (16%)
Query: 69 RVKMVAKQIQRELSDMLLT---DKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
RV + ++IQRE++D+LL D +Q T++ VEV+ DLQ
Sbjct: 5 RVGRLEQEIQREVNDILLKRVRDPRVQGV-----------------TLTGVEVTGDLQQA 47
Query: 126 KVYVSVFGDDRGKEVAIA-GLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIA 184
+Y S+ DD+ E A GL+ +R +LG R+ + TPEI+F D S + G ++
Sbjct: 48 TIYYSILSDDKADEETTAKGLEKATGLIRGELGSRLSIYKTPEIKFELDTSVQYGDKIDR 107
Query: 185 ILDRIKAE 192
+++++K E
Sbjct: 108 LINKLKRE 115
>gi|239636252|ref|ZP_04677254.1| ribosome-binding factor A [Staphylococcus warneri L37603]
gi|239597607|gb|EEQ80102.1| ribosome-binding factor A [Staphylococcus warneri L37603]
Length = 116
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 63/114 (55%), Gaps = 14/114 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + V +Q+++E+ D ++ +KV V TI+DVE++ DL KVY
Sbjct: 5 RAERVGEQMKKEIMD-IVNNKVKDPRV-------------GFITITDVELTNDLSQGKVY 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
++V G+ + + L +++S+LG RM+LR+ PE+ F DES E G+++
Sbjct: 51 LTVLGNQKEVDNTFKALDKAKGFIKSELGSRMRLRIIPELSFEYDESIEYGNKI 104
>gi|169634552|ref|YP_001708288.1| ribosome-binding factor A [Acinetobacter baumannii SDF]
gi|169797406|ref|YP_001715199.1| ribosome-binding factor A [Acinetobacter baumannii AYE]
gi|213155780|ref|YP_002317825.1| ribosome-binding factor A [Acinetobacter baumannii AB0057]
gi|215484845|ref|YP_002327082.1| ribosome-binding factor A [Acinetobacter baumannii AB307-0294]
gi|239500929|ref|ZP_04660239.1| ribosome-binding factor A [Acinetobacter baumannii AB900]
gi|260556298|ref|ZP_05828517.1| ribosome-binding factor A [Acinetobacter baumannii ATCC 19606 = CIP
70.34]
gi|301345332|ref|ZP_07226073.1| ribosome-binding factor A [Acinetobacter baumannii AB056]
gi|301513362|ref|ZP_07238599.1| ribosome-binding factor A [Acinetobacter baumannii AB058]
gi|301594587|ref|ZP_07239595.1| ribosome-binding factor A [Acinetobacter baumannii AB059]
gi|332855371|ref|ZP_08435836.1| ribosome-binding factor A [Acinetobacter baumannii 6013150]
gi|332867633|ref|ZP_08437765.1| ribosome-binding factor A [Acinetobacter baumannii 6013113]
gi|403673519|ref|ZP_10935815.1| ribosome-binding factor A [Acinetobacter sp. NCTC 10304]
gi|417545769|ref|ZP_12196855.1| ribosome-binding factor A [Acinetobacter baumannii OIFC032]
gi|417547948|ref|ZP_12199029.1| ribosome-binding factor A [Acinetobacter baumannii Naval-18]
gi|417554469|ref|ZP_12205538.1| ribosome-binding factor A [Acinetobacter baumannii Naval-81]
gi|417562566|ref|ZP_12213445.1| ribosome-binding factor A [Acinetobacter baumannii OIFC137]
gi|417567240|ref|ZP_12218112.1| ribosome-binding factor A [Acinetobacter baumannii OIFC143]
gi|417575394|ref|ZP_12226247.1| ribosome-binding factor A [Acinetobacter baumannii Canada BC-5]
gi|421201452|ref|ZP_15658611.1| ribosome-binding factor A [Acinetobacter baumannii OIFC109]
gi|421456906|ref|ZP_15906244.1| ribosome-binding factor A [Acinetobacter baumannii IS-123]
gi|421620277|ref|ZP_16061215.1| ribosome-binding factor A [Acinetobacter baumannii OIFC074]
gi|421627233|ref|ZP_16068044.1| ribosome-binding factor A [Acinetobacter baumannii OIFC098]
gi|421634060|ref|ZP_16074681.1| ribosome-binding factor A [Acinetobacter baumannii Naval-13]
gi|421642625|ref|ZP_16083140.1| ribosome-binding factor A [Acinetobacter baumannii IS-235]
gi|421649360|ref|ZP_16089755.1| ribosome-binding factor A [Acinetobacter baumannii IS-251]
gi|421650923|ref|ZP_16091295.1| ribosome-binding factor A [Acinetobacter baumannii OIFC0162]
gi|421655134|ref|ZP_16095458.1| ribosome-binding factor A [Acinetobacter baumannii Naval-72]
gi|421659253|ref|ZP_16099474.1| ribosome-binding factor A [Acinetobacter baumannii Naval-83]
gi|421666365|ref|ZP_16106457.1| ribosome-binding factor A [Acinetobacter baumannii OIFC087]
gi|421670923|ref|ZP_16110905.1| ribosome-binding factor A [Acinetobacter baumannii OIFC099]
gi|421675669|ref|ZP_16115588.1| ribosome-binding factor A [Acinetobacter baumannii OIFC065]
gi|421677508|ref|ZP_16117400.1| ribosome-binding factor A [Acinetobacter baumannii OIFC111]
gi|421692736|ref|ZP_16132387.1| ribosome-binding factor A [Acinetobacter baumannii IS-116]
gi|421694095|ref|ZP_16133727.1| ribosome-binding factor A [Acinetobacter baumannii WC-692]
gi|421698047|ref|ZP_16137591.1| ribosome-binding factor A [Acinetobacter baumannii IS-58]
gi|421789996|ref|ZP_16226235.1| ribosome-binding factor A [Acinetobacter baumannii Naval-82]
gi|421797915|ref|ZP_16233949.1| ribosome-binding factor A [Acinetobacter baumannii Naval-21]
gi|421800981|ref|ZP_16236948.1| ribosome-binding factor A [Acinetobacter baumannii Canada BC1]
gi|421806202|ref|ZP_16242074.1| ribosome-binding factor A [Acinetobacter baumannii WC-A-694]
gi|421807905|ref|ZP_16243762.1| ribosome-binding factor A [Acinetobacter baumannii OIFC035]
gi|424061344|ref|ZP_17798834.1| ribosome-binding factor A [Acinetobacter baumannii Ab33333]
gi|425749293|ref|ZP_18867273.1| ribosome-binding factor A [Acinetobacter baumannii WC-348]
gi|445407785|ref|ZP_21432378.1| ribosome-binding factor A [Acinetobacter baumannii Naval-57]
gi|445446895|ref|ZP_21443526.1| ribosome-binding factor A [Acinetobacter baumannii WC-A-92]
gi|445458079|ref|ZP_21446903.1| ribosome-binding factor A [Acinetobacter baumannii OIFC047]
gi|445492945|ref|ZP_21460703.1| ribosome-binding factor A [Acinetobacter baumannii AA-014]
gi|226736632|sp|B7H114.1|RBFA_ACIB3 RecName: Full=Ribosome-binding factor A
gi|226736633|sp|B7I3S0.1|RBFA_ACIB5 RecName: Full=Ribosome-binding factor A
gi|238685501|sp|A3M1K4.2|RBFA_ACIBT RecName: Full=Ribosome-binding factor A
gi|238688105|sp|B0VE80.1|RBFA_ACIBY RecName: Full=Ribosome-binding factor A
gi|238688130|sp|B0VLU1.1|RBFA_ACIBS RecName: Full=Ribosome-binding factor A
gi|169150333|emb|CAM88230.1| ribosome-binding factor A [Acinetobacter baumannii AYE]
gi|169153344|emb|CAP02457.1| ribosome-binding factor A [Acinetobacter baumannii]
gi|193076183|gb|ABO10798.2| ribosome-binding factor A [Acinetobacter baumannii ATCC 17978]
gi|213054940|gb|ACJ39842.1| ribosome-binding factor A [Acinetobacter baumannii AB0057]
gi|213988968|gb|ACJ59267.1| ribosome-binding factor A [Acinetobacter baumannii AB307-0294]
gi|260410353|gb|EEX03652.1| ribosome-binding factor A [Acinetobacter baumannii ATCC 19606 = CIP
70.34]
gi|332727503|gb|EGJ58929.1| ribosome-binding factor A [Acinetobacter baumannii 6013150]
gi|332733827|gb|EGJ64974.1| ribosome-binding factor A [Acinetobacter baumannii 6013113]
gi|395525148|gb|EJG13237.1| ribosome-binding factor A [Acinetobacter baumannii OIFC137]
gi|395552912|gb|EJG18920.1| ribosome-binding factor A [Acinetobacter baumannii OIFC143]
gi|395563484|gb|EJG25137.1| ribosome-binding factor A [Acinetobacter baumannii OIFC109]
gi|400206127|gb|EJO37107.1| ribosome-binding factor A [Acinetobacter baumannii Canada BC-5]
gi|400210610|gb|EJO41579.1| ribosome-binding factor A [Acinetobacter baumannii IS-123]
gi|400383657|gb|EJP42335.1| ribosome-binding factor A [Acinetobacter baumannii OIFC032]
gi|400388247|gb|EJP51319.1| ribosome-binding factor A [Acinetobacter baumannii Naval-18]
gi|400390886|gb|EJP57933.1| ribosome-binding factor A [Acinetobacter baumannii Naval-81]
gi|404560022|gb|EKA65273.1| ribosome-binding factor A [Acinetobacter baumannii IS-116]
gi|404569934|gb|EKA75019.1| ribosome-binding factor A [Acinetobacter baumannii WC-692]
gi|404573093|gb|EKA78133.1| ribosome-binding factor A [Acinetobacter baumannii IS-58]
gi|404667026|gb|EKB34956.1| ribosome-binding factor A [Acinetobacter baumannii Ab33333]
gi|408508935|gb|EKK10611.1| ribosome-binding factor A [Acinetobacter baumannii OIFC0162]
gi|408509271|gb|EKK10946.1| ribosome-binding factor A [Acinetobacter baumannii Naval-72]
gi|408512679|gb|EKK14318.1| ribosome-binding factor A [Acinetobacter baumannii IS-235]
gi|408514133|gb|EKK15745.1| ribosome-binding factor A [Acinetobacter baumannii IS-251]
gi|408693324|gb|EKL38933.1| ribosome-binding factor A [Acinetobacter baumannii OIFC098]
gi|408700937|gb|EKL46382.1| ribosome-binding factor A [Acinetobacter baumannii OIFC074]
gi|408705167|gb|EKL50516.1| ribosome-binding factor A [Acinetobacter baumannii Naval-13]
gi|408707964|gb|EKL53242.1| ribosome-binding factor A [Acinetobacter baumannii Naval-83]
gi|410381186|gb|EKP33752.1| ribosome-binding factor A [Acinetobacter baumannii OIFC065]
gi|410383220|gb|EKP35753.1| ribosome-binding factor A [Acinetobacter baumannii OIFC099]
gi|410388290|gb|EKP40729.1| ribosome-binding factor A [Acinetobacter baumannii OIFC087]
gi|410393264|gb|EKP45618.1| ribosome-binding factor A [Acinetobacter baumannii OIFC111]
gi|410395540|gb|EKP47834.1| ribosome-binding factor A [Acinetobacter baumannii Naval-21]
gi|410396422|gb|EKP48690.1| ribosome-binding factor A [Acinetobacter baumannii Naval-82]
gi|410406342|gb|EKP58354.1| ribosome-binding factor A [Acinetobacter baumannii Canada BC1]
gi|410407079|gb|EKP59067.1| ribosome-binding factor A [Acinetobacter baumannii WC-A-694]
gi|410416084|gb|EKP67859.1| ribosome-binding factor A [Acinetobacter baumannii OIFC035]
gi|425489366|gb|EKU55678.1| ribosome-binding factor A [Acinetobacter baumannii WC-348]
gi|444759837|gb|ELW84299.1| ribosome-binding factor A [Acinetobacter baumannii WC-A-92]
gi|444762729|gb|ELW87082.1| ribosome-binding factor A [Acinetobacter baumannii AA-014]
gi|444775723|gb|ELW99779.1| ribosome-binding factor A [Acinetobacter baumannii OIFC047]
gi|444780934|gb|ELX04859.1| ribosome-binding factor A [Acinetobacter baumannii Naval-57]
gi|452955613|gb|EME61010.1| ribosome-binding factor A [Acinetobacter baumannii MSP4-16]
Length = 133
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 20/132 (15%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA +R+K +A +QRELS+++ + L + LG L TIS V+VS DL
Sbjct: 1 MAGGQRLKRMADSVQRELSELIRQE-------LKDPRLGG------LVTISGVKVSPDLG 47
Query: 124 VVKVYVSVFG---DDRGKEVA----IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESF 176
VYV+V G D EVA + L + ++R +L RR+K R+TP +RF D++
Sbjct: 48 YADVYVTVMGRELSDDQNEVAHRETLDILNKASGFLRQELSRRIKTRITPRLRFHYDKTN 107
Query: 177 ERGSRVIAILDR 188
G+ + ++++
Sbjct: 108 AYGNYMFGLIEK 119
>gi|194333212|ref|YP_002015072.1| ribosome-binding factor A [Prosthecochloris aestuarii DSM 271]
gi|238693312|sp|B4S4S7.1|RBFA_PROA2 RecName: Full=Ribosome-binding factor A
gi|194311030|gb|ACF45425.1| ribosome-binding factor A [Prosthecochloris aestuarii DSM 271]
Length = 122
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 59/99 (59%), Gaps = 8/99 (8%)
Query: 110 LTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMK--LRLTPE 167
L TI +V+V+ADL + +VYVS+ G ++ + + + L+++ KY+R L R++ R PE
Sbjct: 30 LLTIVEVKVTADLGIARVYVSLIGSEKERGLLMEHLQNETKYIRKLLSSRIRHQFRRIPE 89
Query: 168 IRFIEDESFERGSRVIAILDRIKAEKEAAKSKNKEQFES 206
+ F EDE +++ R+ +L KEA +EQ ES
Sbjct: 90 LEFYEDEQYDKARRIEELL------KEALNRPGEEQTES 122
>gi|284108778|ref|ZP_06386443.1| Ribosome-binding factor A [Candidatus Poribacteria sp. WGA-A3]
gi|283829852|gb|EFC34143.1| Ribosome-binding factor A [Candidatus Poribacteria sp. WGA-A3]
Length = 117
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 51/86 (59%)
Query: 110 LTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIR 169
T++DVE++ DL+ VYVS+ G+ E L + + +VR +LGRR++LR TPE+
Sbjct: 18 FVTVTDVEMNNDLRKAYVYVSLLGNQVETETVGKILDNASGFVRLELGRRLELRYTPEVS 77
Query: 170 FIEDESFERGSRVIAILDRIKAEKEA 195
F D R ++ ILD ++ E E+
Sbjct: 78 FRFDSGGSRAEKIGLILDAVRPESES 103
>gi|253701578|ref|YP_003022767.1| ribosome-binding factor A [Geobacter sp. M21]
gi|259552004|sp|C6E2P9.1|RBFA_GEOSM RecName: Full=Ribosome-binding factor A
gi|251776428|gb|ACT19009.1| ribosome-binding factor A [Geobacter sp. M21]
Length = 119
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%)
Query: 112 TISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFI 171
TI+ V+++ DL+ VY +V G D K+ + AGL S Y+R ++G+ +K+R PE+ F
Sbjct: 33 TITGVKMTPDLRQATVYFTVHGSDEDKKNSEAGLNSAKGYIRKEIGQALKMRFVPEVLFK 92
Query: 172 EDESFERGSRVIAILDRIKAEKEAAKS 198
D S + G + +IL I A + +S
Sbjct: 93 YDTSLDYGQHIESILKEIGATDDGEQS 119
>gi|282889769|ref|ZP_06298308.1| hypothetical protein pah_c004o142 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|338175950|ref|YP_004652760.1| ribosome-binding factor A [Parachlamydia acanthamoebae UV-7]
gi|281500343|gb|EFB42623.1| hypothetical protein pah_c004o142 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|336480308|emb|CCB86906.1| ribosome-binding factor A [Parachlamydia acanthamoebae UV-7]
Length = 132
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 60/101 (59%)
Query: 106 YLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLT 165
Y+S +TT++ V+++ DL+ KVYVS+ G KE + L+S A ++ +++ +R
Sbjct: 29 YVSEMTTVTRVDITKDLRHAKVYVSIMGTGAEKEDTLQALRSAAGFIAVNSSQKVVMRFF 88
Query: 166 PEIRFIEDESFERGSRVIAILDRIKAEKEAAKSKNKEQFES 206
PE+ F+ D+S +R R+ ++L I+ EK ++ + ES
Sbjct: 89 PELTFVLDDSVDRQMRIESLLREIEDEKSTRSEESDDNDES 129
>gi|254525665|ref|ZP_05137717.1| ribosome-binding factor A [Prochlorococcus marinus str. MIT 9202]
gi|221537089|gb|EEE39542.1| ribosome-binding factor A [Prochlorococcus marinus str. MIT 9202]
Length = 130
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 71/142 (50%), Gaps = 19/142 (13%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
M N R+ V+ +++E++ +L D L D IS +++S DLQ
Sbjct: 1 MPNNYRLAKVSSLLKKEITLILQND------------LENDLIRDHFVNISKIDLSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K+Y++ ++ ++ ++ L + ++R LG+R+++R PEI F ED ++G V+
Sbjct: 49 HCKIYITSTAQEKVRKEIVSNLNTAKSFIRHSLGKRIEMRRVPEIIFKEDVVLDKGLSVL 108
Query: 184 AILDRIK-------AEKEAAKS 198
+LD +K E E AKS
Sbjct: 109 KLLDELKNKNQNHNVEDEDAKS 130
>gi|339477989|ref|YP_004706809.1| ribosome-binding factor A [Candidatus Moranella endobia PCIT]
gi|338172540|gb|AEI74941.1| ribosome-binding factor A [Candidatus Moranella endobia PCIT]
Length = 138
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
Query: 110 LTTISDVEVSADLQVVKVYVSVFGDD--RGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPE 167
+ T+S VEVS DL VKV+V+ D+ + I L++ ++RS LG+ M LR+ PE
Sbjct: 34 MATVSGVEVSRDLAYVKVFVTFLNDNSLEQAQTGIRALQAATGFIRSMLGKAMCLRVVPE 93
Query: 168 IRFIEDESFERGSRVIAILDRI 189
++F+ D+S G R+ ++ R+
Sbjct: 94 LKFVYDKSLVEGIRISNLVSRV 115
>gi|154249099|ref|YP_001409924.1| ribosome-binding factor A [Fervidobacterium nodosum Rt17-B1]
gi|171769324|sp|A7HK34.1|RBFA_FERNB RecName: Full=Ribosome-binding factor A
gi|154153035|gb|ABS60267.1| ribosome-binding factor A [Fervidobacterium nodosum Rt17-B1]
Length = 125
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 71/136 (52%), Gaps = 11/136 (8%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
M ++KM+ +I++ LS+ L+ K + P + SL TIS VEVS D +
Sbjct: 1 MKQEYKLKMLESEIRKVLSEALMEMK--DPNIDP---------MKSLITISRVEVSKDKR 49
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
VYVSV GD+ ++ + + K Y R+ + + +++ PE+RF ED+ E R+
Sbjct: 50 YADVYVSVLGDEAKRKDVVNYFEQKKGYFRTYVAKNIRMYTAPELRFKEDKGIEATVRIG 109
Query: 184 AILDRIKAEKEAAKSK 199
+LD IK ++ +K
Sbjct: 110 QLLDSIKESQKGDDNK 125
>gi|56460075|ref|YP_155356.1| ribosome-binding factor A [Idiomarina loihiensis L2TR]
gi|61214736|sp|Q5QTY9.1|RBFA_IDILO RecName: Full=Ribosome-binding factor A
gi|56179085|gb|AAV81807.1| Ribosome-binding factor A [Idiomarina loihiensis L2TR]
Length = 128
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDD-RGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPE 167
S+ T+SDVEVS DL KV+V+ F DD + A+ L + ++RS LG+R+K R+ P+
Sbjct: 33 SMVTVSDVEVSRDLAYAKVFVTFFQDDPEQTKQALKVLNEASGFIRSLLGKRIKARIVPQ 92
Query: 168 IRFIEDESFERGSRV 182
+RF D S G R+
Sbjct: 93 LRFQHDASLNEGIRM 107
>gi|260893507|ref|YP_003239604.1| ribosome-binding factor A [Ammonifex degensii KC4]
gi|260865648|gb|ACX52754.1| ribosome-binding factor A [Ammonifex degensii KC4]
Length = 121
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 53/92 (57%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEI 168
T++ VEVSADL+ K+++SV+G ++ + L+ ++RS LG+R++LR PEI
Sbjct: 30 GFVTVTRVEVSADLRHAKIFLSVYGSPEEEKESFEVLEKAKGFIRSALGKRLRLRHVPEI 89
Query: 169 RFIEDESFERGSRVIAILDRIKAEKEAAKSKN 200
D S G RV+ +L IK E A ++
Sbjct: 90 VLKPDPSISYGVRVMELLSEIKKEGTGADGES 121
>gi|443473720|ref|ZP_21063742.1| Ribosome-binding factor A [Pseudomonas pseudoalcaligenes KF707]
gi|442904594|gb|ELS29571.1| Ribosome-binding factor A [Pseudomonas pseudoalcaligenes KF707]
Length = 129
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 70/127 (55%), Gaps = 17/127 (13%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ LL + ++ + LG L TI+ V+VS DL KV+
Sbjct: 7 RTQRIGDQMQRELA--LLIQREIK-----DPRLG-------LVTITAVDVSRDLSHAKVF 52
Query: 129 VSVFGDDRGKE---VAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
V+V G + E + I L+ A ++R QLG+ MKLR P++ F D S RG+ + A+
Sbjct: 53 VTVMGQEDNIEKTQLNIDILQDAAGFLRMQLGKAMKLRSVPQLHFHYDASIRRGAELSAL 112
Query: 186 LDRIKAE 192
++R AE
Sbjct: 113 IERAMAE 119
>gi|406038414|ref|ZP_11045769.1| ribosome-binding factor A [Acinetobacter ursingii DSM 16037 = CIP
107286]
Length = 135
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 73/133 (54%), Gaps = 22/133 (16%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA +R+K +A +QRELS+++ + L + LG L TIS V+VS DL
Sbjct: 1 MAGGQRLKRMADSVQRELSELIRQE-------LKDPRLGG------LVTISGVKVSPDLG 47
Query: 124 VVKVYVSVFG----DDRGKEVA----IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDES 175
VYV+V G DD+ E+A + L + ++R +L RR+K R+TP +RF D++
Sbjct: 48 YADVYVTVMGRELADDQ-NEIAHQETLDILNKASGFLRQELSRRIKTRITPRLRFHYDKT 106
Query: 176 FERGSRVIAILDR 188
G+ + ++++
Sbjct: 107 NAYGNYMFGLIEK 119
>gi|329905068|ref|ZP_08273996.1| Ribosome-binding factor A [Oxalobacteraceae bacterium IMCC9480]
gi|327547740|gb|EGF32516.1| Ribosome-binding factor A [Oxalobacteraceae bacterium IMCC9480]
Length = 129
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 74/138 (53%), Gaps = 19/138 (13%)
Query: 67 PRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVK 126
P R VA QIQR+L++++ + L + +G + T+++V+++ D K
Sbjct: 9 PVRGIRVADQIQRDLAEIVAYE-------LKDPRVG-------MITVTEVQLTPDYAHAK 54
Query: 127 VYVSVFGDDR-GKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
V+ ++ DD+ + + GLK + ++R QLGRR+ + PE+ F+ D S RG + +
Sbjct: 55 VFFTMLSDDKEAIKNTVTGLKIASGFIRGQLGRRLHVHTLPELHFVHDTSTARGMELSKL 114
Query: 186 LDRIKAEKEAAKSKNKEQ 203
+D E A ++K+ +Q
Sbjct: 115 ID----EANATRAKDDDQ 128
>gi|269837287|ref|YP_003319515.1| ribosome-binding factor A [Sphaerobacter thermophilus DSM 20745]
gi|269786550|gb|ACZ38693.1| ribosome-binding factor A [Sphaerobacter thermophilus DSM 20745]
Length = 135
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 42/69 (60%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEI 168
L +I+ VE+S DL+ KVYVSV G + +E +A L A +VR L RM++R PEI
Sbjct: 31 GLASITRVELSPDLRYAKVYVSVLGSEEDREATMAALTGAAGFVRHLLKPRMRVRHVPEI 90
Query: 169 RFIEDESFE 177
RF D S E
Sbjct: 91 RFRLDRSME 99
>gi|375336230|ref|ZP_09777574.1| ribosome-binding factor A [Succinivibrionaceae bacterium WG-1]
Length = 133
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 59/112 (52%), Gaps = 15/112 (13%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R VA+Q++RE+ A++ + L R + T+SDV VS DL KVY
Sbjct: 7 RADRVAEQMKREI------------AIILQRELKDPRV--KMCTVSDVRVSGDLMYAKVY 52
Query: 129 VSVFGDD-RGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERG 179
V+ + ++AI L +VR+ +G+ MKLR+ PEI+F D S E+G
Sbjct: 53 VTFLDNTPENVKIAIKVLNKAVGFVRTMVGKAMKLRVVPEIKFYHDSSLEKG 104
>gi|313885308|ref|ZP_07819059.1| ribosome-binding factor A [Eremococcus coleocola ACS-139-V-Col8]
gi|312619414|gb|EFR30852.1| ribosome-binding factor A [Eremococcus coleocola ACS-139-V-Col8]
Length = 116
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
Query: 112 TISDVEVSADLQVVKVYVSVFGDDRG-KEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRF 170
TI+DV+++ DLQ +Y S D G ++ AGL++ VRS+LG+R+K+ TPEIRF
Sbjct: 34 TITDVDLTGDLQHATIYYSTLSDLAGQRQKQQAGLEAVTGKVRSELGKRLKIYKTPEIRF 93
Query: 171 IEDESFERGSRVIAILDRIKAEK 193
D S + G+++ ++L+++K ++
Sbjct: 94 ERDASVDYGNKIDSLLNQLKKDE 116
>gi|406596581|ref|YP_006747711.1| ribosome-binding factor A [Alteromonas macleodii ATCC 27126]
gi|407683541|ref|YP_006798715.1| ribosome-binding factor A [Alteromonas macleodii str. 'English
Channel 673']
gi|407687524|ref|YP_006802697.1| ribosome-binding factor A [Alteromonas macleodii str. 'Balearic Sea
AD45']
gi|406373902|gb|AFS37157.1| ribosome-binding factor A [Alteromonas macleodii ATCC 27126]
gi|407245152|gb|AFT74338.1| ribosome-binding factor A [Alteromonas macleodii str. 'English
Channel 673']
gi|407290904|gb|AFT95216.1| ribosome-binding factor A [Alteromonas macleodii str. 'Balearic Sea
AD45']
Length = 133
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 74/137 (54%), Gaps = 15/137 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R VA+Q+ +E++ +L + + +P L T+SDV+VS DL K++
Sbjct: 7 RTDRVAQQVHKEVASILQNEYKHRVGDMP------------LITVSDVDVSRDLAHAKIF 54
Query: 129 VSVFG--DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
V+++ ++ GK I L K++RS L +R+++R P++ F ED+S G R+ ++
Sbjct: 55 VTIYNSTEEEGK-AQIKQLAEYKKFIRSILAKRIRMRSVPDLHFFEDKSIVEGMRISNLV 113
Query: 187 DRIKAEKEAAKSKNKEQ 203
+ A+ E+ + K+ Q
Sbjct: 114 SQTIAKDESKRDKDDPQ 130
>gi|70726645|ref|YP_253559.1| ribosome-binding factor A [Staphylococcus haemolyticus JCSC1435]
gi|123660054|sp|Q4L5X2.1|RBFA_STAHJ RecName: Full=Ribosome-binding factor A
gi|68447369|dbj|BAE04953.1| ribosome-binding factor A [Staphylococcus haemolyticus JCSC1435]
Length = 116
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 65/117 (55%), Gaps = 14/117 (11%)
Query: 66 NPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
N R + V +Q+++E+ D ++ +KV + +G TI+DV+++ DL
Sbjct: 2 NNMRAERVGEQMKKEIMD-IVNNKV------KDPRVG-------FITITDVDLTNDLSQA 47
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
KVY++V G ++ L +++S+LG RM+LR+ PE+ F DES E G+++
Sbjct: 48 KVYLTVLGSEKEVNDTFKALDKAKGFIKSELGSRMRLRIVPELFFEYDESIEYGNKI 104
>gi|335047811|ref|ZP_08540832.1| ribosome-binding factor A [Parvimonas sp. oral taxon 110 str.
F0139]
gi|333761619|gb|EGL39174.1| ribosome-binding factor A [Parvimonas sp. oral taxon 110 str.
F0139]
Length = 132
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 68/129 (52%), Gaps = 14/129 (10%)
Query: 66 NPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
N +R+ + +I R LSD + + +R S+T I+ V V+ DL +
Sbjct: 2 NTKRLGRIESEINRVLSDAIYN------------GIKDNRINPSITNITKVSVTNDLGIC 49
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
V + +FGD++ K+ + GL+S Y++ ++ + LR TP++ F DESFE+ + + +
Sbjct: 50 YVSIGIFGDEKTKDKIMKGLESATGYMKKRIADALDLRHTPKLIFKLDESFEKAALMNEL 109
Query: 186 LDRIKAEKE 194
+ IK KE
Sbjct: 110 I--IKVSKE 116
>gi|260885919|ref|ZP_05736166.2| ribosome-binding factor A [Prevotella tannerae ATCC 51259]
gi|260851001|gb|EEX70870.1| ribosome-binding factor A [Prevotella tannerae ATCC 51259]
Length = 134
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 64/111 (57%), Gaps = 17/111 (15%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + + IQ+ELSDML + A G L ++S V +S DL V + Y
Sbjct: 28 RQQKIERLIQKELSDMLQRQ--------TQQAPGV------LVSVSRVRISPDLSVCRGY 73
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMK--LRLTPEIRFIEDESFE 177
+SVF +RG+E+ +A + + K VR +LG+R++ LR+ PE++F D+S +
Sbjct: 74 LSVFPSERGEEI-VANINANVKTVRFELGKRVRHQLRIIPELKFFIDDSLD 123
>gi|452746358|ref|ZP_21946179.1| ribosome-binding factor A [Pseudomonas stutzeri NF13]
gi|452009755|gb|EME01967.1| ribosome-binding factor A [Pseudomonas stutzeri NF13]
Length = 129
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 69/128 (53%), Gaps = 19/128 (14%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + LG L TI+ V+VS DL K++
Sbjct: 7 RTQRIGDQMQRELALLIQRE-------IKDPRLG-------LVTITAVDVSRDLSHAKIF 52
Query: 129 VSVFGDDRGKEVAIAG----LKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIA 184
+++ G D +E AI G L A ++R QLG+ MKLR P++ F D S RG + +
Sbjct: 53 ITIMGQDDDQE-AIKGNLRILNDAAGFLRMQLGKSMKLRTVPQLHFNYDASIRRGVELSS 111
Query: 185 ILDRIKAE 192
+++R AE
Sbjct: 112 LIERAVAE 119
>gi|83644102|ref|YP_432537.1| ribosome-binding factor A [Hahella chejuensis KCTC 2396]
gi|123534477|sp|Q2SML2.1|RBFA_HAHCH RecName: Full=Ribosome-binding factor A
gi|83632145|gb|ABC28112.1| ribosome-binding factor A [Hahella chejuensis KCTC 2396]
Length = 135
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 71/130 (54%), Gaps = 20/130 (15%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R+ VA+QIQ+EL+ ++ + L + LG + T++ V+VS DL VY
Sbjct: 7 RLDRVAEQIQKELAQLIQRE-------LKDPRLG-------MVTVNSVKVSKDLSYADVY 52
Query: 129 VSVFG------DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
V+V D + ++ L+S A ++RS+LGR +KLR+ P++RF D S R+
Sbjct: 53 VTVLNLKDVEDDGDASKASLKVLESAAGFLRSELGRAIKLRVMPQLRFHYDASVSNAQRL 112
Query: 183 IAILDRIKAE 192
A++ + +A+
Sbjct: 113 GALIQKARAK 122
>gi|350272434|ref|YP_004883742.1| ribosome-binding factor A [Oscillibacter valericigenes Sjm18-20]
gi|348597276|dbj|BAL01237.1| ribosome-binding factor A [Oscillibacter valericigenes Sjm18-20]
Length = 126
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 61/96 (63%), Gaps = 3/96 (3%)
Query: 108 SSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPE 167
+ + +++ V + DL+ +VY+SV + K+V + GLKS A ++R +LG ++LR TPE
Sbjct: 32 TGMVSVTRVNTTPDLRYAQVYISVLDKTQEKDV-LKGLKSAAGFLRRELGAALRLRYTPE 90
Query: 168 IRFIEDESFERGSRVIAILDRIKAEKEAAKSKNKEQ 203
++F+ D+S E G+ ++ +L + E+ A+ +E+
Sbjct: 91 LQFVADDSIEHGAHILELLRDV--ERRDAQRGGQEE 124
>gi|302874664|ref|YP_003843297.1| ribosome-binding factor A [Clostridium cellulovorans 743B]
gi|307690722|ref|ZP_07633168.1| ribosome-binding factor A [Clostridium cellulovorans 743B]
gi|302577521|gb|ADL51533.1| ribosome-binding factor A [Clostridium cellulovorans 743B]
Length = 127
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 58/97 (59%)
Query: 107 LSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTP 166
L+ + +++ V+V+ DL+ KVYVS+FG D K+ ++ LK+ + ++R ++ ++ LR TP
Sbjct: 30 LAPMISVTSVDVTKDLKYAKVYVSIFGSDTEKDESLKILKNSSGFIRREVASKINLRSTP 89
Query: 167 EIRFIEDESFERGSRVIAILDRIKAEKEAAKSKNKEQ 203
E+ F D S E G + ++ IK ++ + E+
Sbjct: 90 ELLFNLDTSIEYGMHIDRLIHSIKENEDNGDESDTEE 126
>gi|261416682|ref|YP_003250365.1| ribosome-binding factor A [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|385791527|ref|YP_005822650.1| ribosome-binding factor A [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261373138|gb|ACX75883.1| ribosome-binding factor A [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|302325362|gb|ADL24563.1| ribosome-binding factor A [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 117
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 67/127 (52%), Gaps = 13/127 (10%)
Query: 68 RRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKV 127
RR + +Q + E+S K++Q + D +S+L +I+ V+++ DL K
Sbjct: 3 RRTDRLGEQFREEIS------KLIQKGL-------KDPRVSTLASITRVDITEDLSYAKA 49
Query: 128 YVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
VSV G D+ K + GL + A ++R LG+ +K+ PE++F+ DE+ E + IL
Sbjct: 50 LVSVMGSDKEKRDTLVGLNNSAGFIRGVLGKALKIFKVPELKFVLDENLEHAMHIEEILA 109
Query: 188 RIKAEKE 194
+K + E
Sbjct: 110 ELKQKGE 116
>gi|223936319|ref|ZP_03628231.1| ribosome-binding factor A [bacterium Ellin514]
gi|223894837|gb|EEF61286.1| ribosome-binding factor A [bacterium Ellin514]
Length = 125
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 51/83 (61%)
Query: 108 SSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPE 167
S L T+++V VS+DL V++ + G D+ K+ A L K ++ +G+ + L+ TP
Sbjct: 30 SGLITVNEVGVSSDLHSATVFIGILGTDQQKKKGFAQLNHHRKRIQGLVGQAVILKYTPT 89
Query: 168 IRFIEDESFERGSRVIAILDRIK 190
+RF+ DES G++V+ I+D ++
Sbjct: 90 LRFVLDESIAEGNKVLQIIDELE 112
>gi|227513186|ref|ZP_03943235.1| ribosome-binding factor A [Lactobacillus buchneri ATCC 11577]
gi|227083567|gb|EEI18879.1| ribosome-binding factor A [Lactobacillus buchneri ATCC 11577]
Length = 116
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 15/125 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
RV + ++IQRE++D+LL V G T++ VEV+ DLQ +Y
Sbjct: 5 RVGRLEQEIQREVNDILLK------RVRDPRVQGV--------TLTGVEVTGDLQQATIY 50
Query: 129 VSVFGDDRGKEVAIA-GLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
S+ DD+ E A GL+ +R +LG R+ + TPEI+F D S + G ++ ++
Sbjct: 51 YSILSDDKADEETTAKGLEKATGLIRGELGSRLSIYKTPEIKFELDTSVQYGDKIDRFIN 110
Query: 188 RIKAE 192
++K E
Sbjct: 111 KLKRE 115
>gi|77165584|ref|YP_344109.1| ribosome-binding factor A [Nitrosococcus oceani ATCC 19707]
gi|254433845|ref|ZP_05047353.1| ribosome-binding factor A [Nitrosococcus oceani AFC27]
gi|123593841|sp|Q3J9B7.1|RBFA_NITOC RecName: Full=Ribosome-binding factor A
gi|76883898|gb|ABA58579.1| ribosome-binding factor A [Nitrosococcus oceani ATCC 19707]
gi|207090178|gb|EDZ67449.1| ribosome-binding factor A [Nitrosococcus oceani AFC27]
Length = 127
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 55/91 (60%)
Query: 110 LTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIR 169
L T+S V VS DL+ K YV+ G + + +A L A +++ L +R++LR+ P ++
Sbjct: 34 LVTVSHVRVSPDLRQAKAYVTFLGKEEDTQEQLAVLNKAAGFLQHGLSQRVELRVIPRLQ 93
Query: 170 FIEDESFERGSRVIAILDRIKAEKEAAKSKN 200
F+ D+S ERG R+ A++D+ ++ +S N
Sbjct: 94 FVYDDSIERGRRLSALIDKAVQKETDGESDN 124
>gi|255319711|ref|ZP_05360919.1| ribosome-binding factor A [Acinetobacter radioresistens SK82]
gi|262380007|ref|ZP_06073162.1| ribosome-binding factor A [Acinetobacter radioresistens SH164]
gi|421464540|ref|ZP_15913230.1| ribosome-binding factor A [Acinetobacter radioresistens WC-A-157]
gi|421856658|ref|ZP_16289020.1| ribosome-binding factor A [Acinetobacter radioresistens DSM 6976 =
NBRC 102413]
gi|255303240|gb|EET82449.1| ribosome-binding factor A [Acinetobacter radioresistens SK82]
gi|262298201|gb|EEY86115.1| ribosome-binding factor A [Acinetobacter radioresistens SH164]
gi|400205293|gb|EJO36274.1| ribosome-binding factor A [Acinetobacter radioresistens WC-A-157]
gi|403187862|dbj|GAB75221.1| ribosome-binding factor A [Acinetobacter radioresistens DSM 6976 =
NBRC 102413]
Length = 132
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 79/161 (49%), Gaps = 36/161 (22%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA +R+K + +QRELS+++ + L + LG L TIS V+VS DL
Sbjct: 1 MAGSQRLKRMGDSVQRELSELIRQE-------LKDPRLGG------LVTISAVKVSPDLG 47
Query: 124 VVKVYVSVFG----DDRGKEV---AIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESF 176
VYV+V G DD+ ++ + L + ++R +L RR+K R+TP +RF D++
Sbjct: 48 YADVYVTVMGRELSDDQNEQAHQQTLEVLNKASGFLRQELSRRIKTRITPRLRFHYDKTN 107
Query: 177 ERGSRVIAILDRIKAEKEAAKSKNKEQFESPDLPEDERDWE 217
G+ + ++ EA K DLPE + D E
Sbjct: 108 AYGNYMFGLI------AEAVK----------DLPERKEDEE 132
>gi|294101961|ref|YP_003553819.1| ribosome-binding factor A [Aminobacterium colombiense DSM 12261]
gi|293616941|gb|ADE57095.1| ribosome-binding factor A [Aminobacterium colombiense DSM 12261]
Length = 130
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 67/122 (54%), Gaps = 15/122 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R++ + KQ+QRE+ +L++ + + A A I++V S DL+V V+
Sbjct: 5 RMQRINKQLQREIC------LLLEYKIKNDVAKDA--------IITEVSCSKDLEVATVF 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
D + ++ + L+S A +RS LG+R++LR PEIRF D S + G R+ A+LD
Sbjct: 51 FVTL-DQKQRKAVLKALESVAGPIRSLLGKRLRLRQIPEIRFEIDSSVDYGRRIDALLDS 109
Query: 189 IK 190
IK
Sbjct: 110 IK 111
>gi|323491072|ref|ZP_08096264.1| ribosome-binding factor A [Vibrio brasiliensis LMG 20546]
gi|323314736|gb|EGA67808.1| ribosome-binding factor A [Vibrio brasiliensis LMG 20546]
Length = 136
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 69/125 (55%), Gaps = 15/125 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + V++Q+Q+EL+ +L + + ++ LG + TISDVEVS DL KV+
Sbjct: 7 RTQRVSQQLQKELALILQRE-------VRDSRLG-------MVTISDVEVSRDLAYAKVF 52
Query: 129 VSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
V+ ++ E + L+ ++R LG+R++LRLTPE+RF D + G R+ ++
Sbjct: 53 VTFLCVGEQTPESCLEALREHEVHIRMMLGKRIRLRLTPEVRFYYDNTLVEGMRMSNLVS 112
Query: 188 RIKAE 192
+ E
Sbjct: 113 EVVNE 117
>gi|311104989|ref|YP_003977842.1| ribosome-binding factor A [Achromobacter xylosoxidans A8]
gi|422322181|ref|ZP_16403223.1| ribosome-binding factor A [Achromobacter xylosoxidans C54]
gi|423016446|ref|ZP_17007167.1| ribosome-binding factor A [Achromobacter xylosoxidans AXX-A]
gi|310759678|gb|ADP15127.1| ribosome-binding factor A [Achromobacter xylosoxidans A8]
gi|317402830|gb|EFV83372.1| ribosome-binding factor A [Achromobacter xylosoxidans C54]
gi|338780523|gb|EGP44930.1| ribosome-binding factor A [Achromobacter xylosoxidans AXX-A]
Length = 133
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 70/152 (46%), Gaps = 24/152 (15%)
Query: 62 KCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSAD 121
K A P R +A QIQ++L+ ++ + D + L T+S VE+S D
Sbjct: 5 KSKAIPGRNLRLADQIQKDLAGIIQRE--------------IDTTRAGLITLSGVELSTD 50
Query: 122 LQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSR 181
KVY +V G + E A A L KA ++ SQL + + + P +RF DE RG
Sbjct: 51 YAHAKVYFTVLGAE--PEAATALLNEKAGWLHSQLYKLLHIHTVPTLRFFHDEQIARGIE 108
Query: 182 VIAILDRIKAEKEAAKSKNKEQFESPDLPEDE 213
+ ++DR A + S PD PED+
Sbjct: 109 MSILIDR--ANRPGPHSG------VPDEPEDQ 132
>gi|146283629|ref|YP_001173782.1| ribosome-binding factor A [Pseudomonas stutzeri A1501]
gi|339495433|ref|YP_004715726.1| ribosome-binding factor A [Pseudomonas stutzeri ATCC 17588 = LMG
11199]
gi|386022051|ref|YP_005940076.1| ribosome-binding factor A [Pseudomonas stutzeri DSM 4166]
gi|431926153|ref|YP_007239187.1| ribosome-binding factor A [Pseudomonas stutzeri RCH2]
gi|166219395|sp|A4VPN9.1|RBFA_PSEU5 RecName: Full=Ribosome-binding factor A
gi|145571834|gb|ABP80940.1| ribosome-binding factor A [Pseudomonas stutzeri A1501]
gi|327482024|gb|AEA85334.1| ribosome-binding factor A [Pseudomonas stutzeri DSM 4166]
gi|338802805|gb|AEJ06637.1| ribosome-binding factor A [Pseudomonas stutzeri ATCC 17588 = LMG
11199]
gi|431824440|gb|AGA85557.1| ribosome-binding factor A [Pseudomonas stutzeri RCH2]
Length = 129
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 69/128 (53%), Gaps = 19/128 (14%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + LG L TI+ V+VS DL K++
Sbjct: 7 RTQRIGDQMQRELALLIQRE-------IKDPRLG-------LITITAVDVSRDLSHAKIF 52
Query: 129 VSVFGDDRGKEVAIAG----LKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIA 184
+++ G D +E AI G L A ++R QLG+ MKLR P++ F D S RG + +
Sbjct: 53 ITIMGQDDDQE-AIKGNLRILNDAAGFLRMQLGKSMKLRTVPQLHFNYDASIRRGVELSS 111
Query: 185 ILDRIKAE 192
+++R AE
Sbjct: 112 LIERAVAE 119
>gi|21224056|ref|NP_629835.1| ribosome-binding factor A [Streptomyces coelicolor A3(2)]
gi|289768759|ref|ZP_06528137.1| ribosome-binding factor A [Streptomyces lividans TK24]
gi|6225918|sp|Q9Z527.1|RBFA_STRCO RecName: Full=Ribosome-binding factor A
gi|4464272|emb|CAB37475.1| putative ribosome-binding factor [Streptomyces coelicolor A3(2)]
gi|289698958|gb|EFD66387.1| ribosome-binding factor A [Streptomyces lividans TK24]
Length = 160
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 10/123 (8%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLR 163
D L S TI+D V+ DL+ V+ +V+GDD ++ A AGL+S +RS++G+ ++
Sbjct: 28 DPRLGSHVTITDTRVTGDLREATVFYTVYGDDEERKAATAGLESAKGILRSEVGKAAGVK 87
Query: 164 LTPEIRFIEDESFERGSRVIAILDRIKAEKE--------AAKSKNKEQFESPDLPEDERD 215
TP + F+ D + + +LD+ + E A + + + PD EDE D
Sbjct: 88 FTPTLTFVMDALPDTARNIEDLLDKARQSDEKVREASAGATYAGEADPYRKPD--EDETD 145
Query: 216 WEG 218
EG
Sbjct: 146 TEG 148
>gi|417819499|ref|ZP_12466115.1| ribosome-binding factor A [Vibrio cholerae HE39]
gi|340041061|gb|EGR02029.1| ribosome-binding factor A [Vibrio cholerae HE39]
Length = 122
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 64/111 (57%), Gaps = 15/111 (13%)
Query: 73 VAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVF 132
+A+Q+Q+EL+ M+L +V ++ LG + TISDVEVS DL KV+V+
Sbjct: 1 MAQQLQKELA-MILQREV------RDSRLG-------MVTISDVEVSRDLAYAKVFVTFL 46
Query: 133 G-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
++ E +A L+ +R LG++++LRLTPEIRF D + G R+
Sbjct: 47 CIGEQTPESCLAALREHEVQIRMMLGKQIRLRLTPEIRFYYDNTLVEGMRM 97
>gi|187478883|ref|YP_786907.1| ribosome-binding factor A [Bordetella avium 197N]
gi|123514389|sp|Q2KXY9.1|RBFA_BORA1 RecName: Full=Ribosome-binding factor A
gi|115423469|emb|CAJ50003.1| ribosome-binding factor A [Bordetella avium 197N]
Length = 132
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 25/152 (16%)
Query: 62 KCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSAD 121
K + P R +A+QIQ++L+ ++ + D + L T+S VE+SAD
Sbjct: 5 KSKSIPGRNLRLAEQIQKDLAGIIQRE--------------IDMTRAGLITLSGVELSAD 50
Query: 122 LQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSR 181
KVY +V G + + A A L KA ++ SQL + + + P +RF+ D ERG
Sbjct: 51 YAHAKVYFTVLGAE--PDTAAALLNEKAGWLHSQLYKLLHIHTVPTLRFVHDPQLERGIE 108
Query: 182 VIAILDRIKAEKEAAKSKNKEQFESPDLPEDE 213
+ ++DR + PD PED+
Sbjct: 109 MSMLIDRANRGPHSG---------VPDEPEDQ 131
>gi|418055357|ref|ZP_12693412.1| Ribosome-binding factor A [Hyphomicrobium denitrificans 1NES1]
gi|353210939|gb|EHB76340.1| Ribosome-binding factor A [Hyphomicrobium denitrificans 1NES1]
Length = 132
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 108 SSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPE 167
S + TI +V +S DL++ VYV G + K V + L KY+R+++ + LR P+
Sbjct: 44 SHVITIPEVRLSPDLKLATVYVMPLGGNDVKPV-VEALTRNKKYIRAEVAHTLNLRYAPD 102
Query: 168 IRFIEDESFERGSRVIAILDRIKAEKEAAK 197
+RF EDE+FE +R+ +LD K ++ K
Sbjct: 103 LRFREDETFEEATRIDRLLDSEKVRRDTGK 132
>gi|119944580|ref|YP_942260.1| ribosome-binding factor A [Psychromonas ingrahamii 37]
gi|166219396|sp|A1ST46.1|RBFA_PSYIN RecName: Full=Ribosome-binding factor A
gi|119863184|gb|ABM02661.1| ribosome-binding factor A [Psychromonas ingrahamii 37]
Length = 133
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 76/139 (54%), Gaps = 20/139 (14%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R V++Q+Q+EL+ ++LQ V + +G + TIS V+V+ DL KV+
Sbjct: 7 RTSRVSQQVQKELA------RILQQEV-KDPRIG-------MVTISGVDVTRDLAYAKVF 52
Query: 129 VSVF--GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
V+ GD E ++ GL + A Y+R LG+ M+LR+ PE+RF D + G R+ ++
Sbjct: 53 VTFLTVGDQTNDE-SLEGLNAAAGYIRRLLGKAMRLRIVPEVRFCFDSTLTEGLRISELV 111
Query: 187 -DRIKAEKE--AAKSKNKE 202
+KA+K AA + +E
Sbjct: 112 SGAVKADKTKLAASGRTEE 130
>gi|332298596|ref|YP_004440518.1| Ribosome-binding factor A [Treponema brennaborense DSM 12168]
gi|332181699|gb|AEE17387.1| Ribosome-binding factor A [Treponema brennaborense DSM 12168]
Length = 123
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 79/136 (58%), Gaps = 13/136 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
M++ R +++ +QI+ E+S M+LT ++ D +S+ +++ V+VS DL
Sbjct: 1 MSSFRLIRL-GEQIREEISRMILTRQI------------KDPRVSTFLSVNRVDVSGDLG 47
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
KVYVS F + E + GL++ A +++S + +++ +R P++ FI D+S + G ++
Sbjct: 48 YAKVYVSSFMSVKETENGVKGLQNAAGFIQSTIAKKLTIRQFPKLSFILDQSIKEGFEMV 107
Query: 184 AILDRIKAEKEAAKSK 199
L+ ++ + ++++ +
Sbjct: 108 RKLNDLELQSQSSQER 123
>gi|34496918|ref|NP_901133.1| ribosome-binding factor A [Chromobacterium violaceum ATCC 12472]
gi|39931751|sp|Q7NY12.1|RBFA_CHRVO RecName: Full=Ribosome-binding factor A
gi|34330314|gb|AAQ59138.2| ribosome-binding factor A [Chromobacterium violaceum ATCC 12472]
Length = 138
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 68/124 (54%), Gaps = 15/124 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R VA+QIQREL++ LT K L+ P A TI+ VEV+ D KVY
Sbjct: 10 RSDRVAEQIQRELAE--LTRKGLKD---PRAGW---------ITITAVEVTRDYSHAKVY 55
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+V D +E L S A Y+R++LGR +K+ P++ F+ D+S ERG + +++++
Sbjct: 56 YTVMVDS-TREATQEALDSSAGYLRNELGRAIKMFSMPQLHFVYDDSVERGMHLTSLINQ 114
Query: 189 IKAE 192
+ E
Sbjct: 115 VARE 118
>gi|374335277|ref|YP_005091964.1| ribosome-binding factor A [Oceanimonas sp. GK1]
gi|372984964|gb|AEY01214.1| ribosome-binding factor A [Oceanimonas sp. GK1]
Length = 134
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 67/119 (56%), Gaps = 15/119 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + V +++Q+E++ +L + + + LG + T+S VEVS DL KV+
Sbjct: 7 RTRRVGQELQKEVAVILQRE-------IKDERLG-------MVTVSGVEVSRDLNYAKVF 52
Query: 129 VSVFGDDRGK-EVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
V+ +D + E + LK + Y+RS + + M+LR+TPE+RF+ D+S G R+ ++
Sbjct: 53 VTFLDNDAERVEQGMEALKDASGYIRSLVAKAMRLRVTPELRFVYDQSLVEGMRISTLV 111
>gi|342215042|ref|ZP_08707711.1| ribosome-binding factor A [Veillonella sp. oral taxon 780 str.
F0422]
gi|341590148|gb|EGS33397.1| ribosome-binding factor A [Veillonella sp. oral taxon 780 str.
F0422]
Length = 116
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 51/86 (59%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEI 168
T++DV V+ DL+ +YVS+FG + K+ ++ L+ A Y RS+LG+ ++LR P I
Sbjct: 31 GFVTVTDVRVTGDLREATIYVSLFGSEAEKQQSLETLRRSAGYFRSELGKVLQLRHIPSI 90
Query: 169 RFIEDESFERGSRVIAILDRIKAEKE 194
F D S + + +L+ IK E++
Sbjct: 91 AFDADTSLDYSMHIEGLLNSIKQEEQ 116
>gi|312869024|ref|ZP_07729201.1| ribosome-binding factor A [Lactobacillus oris PB013-T2-3]
gi|311095450|gb|EFQ53717.1| ribosome-binding factor A [Lactobacillus oris PB013-T2-3]
Length = 119
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 64/122 (52%), Gaps = 15/122 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
RV +A+QIQRE+ D+LL V G TI+ V+V+ DLQ +Y
Sbjct: 7 RVDRLAQQIQREVDDILLK------RVRDPRVQGV--------TITGVDVTGDLQQATIY 52
Query: 129 VSVFGDDRGK-EVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
S+ D + E AGL +RS+LG R+ + TPEI+F D+S GSR+ +++
Sbjct: 53 YSILSDKASEMEKVQAGLDKATGLIRSELGARLNIFKTPEIKFERDKSVAYGSRIDQLIN 112
Query: 188 RI 189
++
Sbjct: 113 QL 114
>gi|410727060|ref|ZP_11365283.1| ribosome-binding factor A [Clostridium sp. Maddingley MBC34-26]
gi|410599395|gb|EKQ53948.1| ribosome-binding factor A [Clostridium sp. Maddingley MBC34-26]
Length = 119
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 71/127 (55%), Gaps = 15/127 (11%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MAN R + + ++ +RE+S+++ + D L+++ +++DV V+ DL+
Sbjct: 1 MANYRGGR-INEEFKREISNLIQNEI-------------KDPRLTAMISVTDVNVTKDLR 46
Query: 124 VVKVYVSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
KVYVS+F DD K+ + LKS + ++R +G+++ LR TPEI D+S G +
Sbjct: 47 YAKVYVSIFSKDDEEKKNNLEALKSASGFIRKAVGQKINLRHTPEIIIELDDSINYGMHM 106
Query: 183 IAILDRI 189
++ RI
Sbjct: 107 DELIQRI 113
>gi|349575072|ref|ZP_08886998.1| ribosome-binding factor A [Neisseria shayeganii 871]
gi|348013393|gb|EGY52311.1| ribosome-binding factor A [Neisseria shayeganii 871]
Length = 123
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 63/121 (52%), Gaps = 15/121 (12%)
Query: 73 VAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVF 132
V +QI REL+++ T G + TI++V V+ D +Y +V
Sbjct: 14 VQEQIMRELAELTRT--------------GLKDPRAGFITINEVAVTRDYSHATIYYTVL 59
Query: 133 GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRIKAE 192
DD +EV L+ Y+RS+L +R+KL TPE+ F DES ERG + +++++ AE
Sbjct: 60 -DDATREVTAEALEHAKGYLRSELSKRIKLFKTPELHFKYDESLERGMSLSHLIEQVAAE 118
Query: 193 K 193
K
Sbjct: 119 K 119
>gi|432751644|ref|ZP_19986227.1| ribosome-binding factor A [Escherichia coli KTE29]
gi|431294820|gb|ELF84999.1| ribosome-binding factor A [Escherichia coli KTE29]
Length = 133
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 69/124 (55%), Gaps = 20/124 (16%)
Query: 62 KCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSAD 121
K P+RV A+++Q+E++ +LQ + D L +TT+S VE+S D
Sbjct: 3 KEFGRPQRV---AQEMQKEIA------LILQREI-------KDPRLGMMTTVSGVEMSRD 46
Query: 122 LQVVKVYVSVFGDDRGKEVAIAGLKS---KAKYVRSQLGRRMKLRLTPEIRFIEDESFER 178
L KVYV+ F +D+ ++ AG+K+ + ++RS LG+ M+LR+ PE+ F D S
Sbjct: 47 LAYAKVYVT-FLNDKDEDAVKAGIKALQEASGFIRSLLGKEMRLRIVPELTFFYDNSLVE 105
Query: 179 GSRV 182
G R+
Sbjct: 106 GMRM 109
>gi|15677238|ref|NP_274391.1| ribosome-binding factor A [Neisseria meningitidis MC58]
gi|121635079|ref|YP_975324.1| ribosome-binding factor A [Neisseria meningitidis FAM18]
gi|385341712|ref|YP_005895583.1| ribosome-binding factor A [Neisseria meningitidis M01-240149]
gi|385851037|ref|YP_005897552.1| ribosome-binding factor A [Neisseria meningitidis M04-240196]
gi|385853002|ref|YP_005899516.1| ribosome-binding factor A [Neisseria meningitidis H44/76]
gi|385857442|ref|YP_005903954.1| ribosome-binding factor A [Neisseria meningitidis NZ-05/33]
gi|416177864|ref|ZP_11610233.1| ribosome-binding factor A [Neisseria meningitidis M6190]
gi|416182741|ref|ZP_11612177.1| ribosome-binding factor A [Neisseria meningitidis M13399]
gi|416191845|ref|ZP_11616273.1| ribosome-binding factor A [Neisseria meningitidis ES14902]
gi|416196313|ref|ZP_11618083.1| ribosome-binding factor A [Neisseria meningitidis CU385]
gi|416215262|ref|ZP_11623297.1| ribosome-binding factor A [Neisseria meningitidis M01-240013]
gi|421554972|ref|ZP_16000911.1| ribosome-binding factor A [Neisseria meningitidis 98008]
gi|421565620|ref|ZP_16011393.1| ribosome-binding factor A [Neisseria meningitidis NM3081]
gi|427828062|ref|ZP_18995081.1| ribosome-binding factor A [Neisseria meningitidis H44/76]
gi|433465315|ref|ZP_20422797.1| ribosome-binding factor A [Neisseria meningitidis NM422]
gi|433488653|ref|ZP_20445815.1| ribosome-binding factor A [Neisseria meningitidis M13255]
gi|433490695|ref|ZP_20447821.1| ribosome-binding factor A [Neisseria meningitidis NM418]
gi|433492766|ref|ZP_20449859.1| ribosome-binding factor A [Neisseria meningitidis NM586]
gi|433494900|ref|ZP_20451968.1| ribosome-binding factor A [Neisseria meningitidis NM762]
gi|433497066|ref|ZP_20454104.1| ribosome-binding factor A [Neisseria meningitidis M7089]
gi|433499128|ref|ZP_20456137.1| ribosome-binding factor A [Neisseria meningitidis M7124]
gi|433501104|ref|ZP_20458090.1| ribosome-binding factor A [Neisseria meningitidis NM174]
gi|433503164|ref|ZP_20460125.1| ribosome-binding factor A [Neisseria meningitidis NM126]
gi|433505162|ref|ZP_20462101.1| ribosome-binding factor A [Neisseria meningitidis 9506]
gi|433507378|ref|ZP_20464286.1| ribosome-binding factor A [Neisseria meningitidis 9757]
gi|433509436|ref|ZP_20466305.1| ribosome-binding factor A [Neisseria meningitidis 12888]
gi|433511584|ref|ZP_20468411.1| ribosome-binding factor A [Neisseria meningitidis 4119]
gi|20978660|sp|Q9JYY2.1|RBFA_NEIMB RecName: Full=Ribosome-binding factor A
gi|166219381|sp|A1KUJ5.1|RBFA_NEIMF RecName: Full=Ribosome-binding factor A
gi|7226619|gb|AAF41747.1| ribosome-binding factor A [Neisseria meningitidis MC58]
gi|120866785|emb|CAM10538.1| ribosomal-binding factor A [Neisseria meningitidis FAM18]
gi|316984188|gb|EFV63166.1| ribosome-binding factor A [Neisseria meningitidis H44/76]
gi|325132434|gb|EGC55127.1| ribosome-binding factor A [Neisseria meningitidis M6190]
gi|325134391|gb|EGC57036.1| ribosome-binding factor A [Neisseria meningitidis M13399]
gi|325138422|gb|EGC60990.1| ribosome-binding factor A [Neisseria meningitidis ES14902]
gi|325140407|gb|EGC62928.1| ribosome-binding factor A [Neisseria meningitidis CU385]
gi|325143448|gb|EGC65774.1| ribosome-binding factor A [Neisseria meningitidis M01-240013]
gi|325200006|gb|ADY95461.1| ribosome-binding factor A [Neisseria meningitidis H44/76]
gi|325201918|gb|ADY97372.1| ribosome-binding factor A [Neisseria meningitidis M01-240149]
gi|325205860|gb|ADZ01313.1| ribosome-binding factor A [Neisseria meningitidis M04-240196]
gi|325208331|gb|ADZ03783.1| ribosome-binding factor A [Neisseria meningitidis NZ-05/33]
gi|389605496|emb|CCA44413.1| ribosome-binding factor A [Neisseria meningitidis alpha522]
gi|402332125|gb|EJU67456.1| ribosome-binding factor A [Neisseria meningitidis 98008]
gi|402344055|gb|EJU79197.1| ribosome-binding factor A [Neisseria meningitidis NM3081]
gi|432203259|gb|ELK59313.1| ribosome-binding factor A [Neisseria meningitidis NM422]
gi|432223486|gb|ELK79267.1| ribosome-binding factor A [Neisseria meningitidis M13255]
gi|432227686|gb|ELK83395.1| ribosome-binding factor A [Neisseria meningitidis NM418]
gi|432228552|gb|ELK84252.1| ribosome-binding factor A [Neisseria meningitidis NM586]
gi|432230103|gb|ELK85782.1| ribosome-binding factor A [Neisseria meningitidis NM762]
gi|432233559|gb|ELK89186.1| ribosome-binding factor A [Neisseria meningitidis M7089]
gi|432234962|gb|ELK90582.1| ribosome-binding factor A [Neisseria meningitidis M7124]
gi|432236395|gb|ELK92004.1| ribosome-binding factor A [Neisseria meningitidis NM174]
gi|432239929|gb|ELK95473.1| ribosome-binding factor A [Neisseria meningitidis NM126]
gi|432241287|gb|ELK96817.1| ribosome-binding factor A [Neisseria meningitidis 9506]
gi|432241743|gb|ELK97272.1| ribosome-binding factor A [Neisseria meningitidis 9757]
gi|432246824|gb|ELL02270.1| ribosome-binding factor A [Neisseria meningitidis 12888]
gi|432247632|gb|ELL03069.1| ribosome-binding factor A [Neisseria meningitidis 4119]
Length = 123
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 71/136 (52%), Gaps = 18/136 (13%)
Query: 58 RKTVKCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVE 117
RK + A RVK +QI REL++++ T G + T+++VE
Sbjct: 2 RKPQRGYARQDRVK---EQIMRELAELVRT--------------GLKDPRAGFITVNEVE 44
Query: 118 VSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFE 177
V+ D V+ ++ D +E+ L+ ++RS+L +R+KL TPE+ F DES E
Sbjct: 45 VTRDYSHATVFYTILNQD-AREITEEVLEHARGHLRSELAKRIKLFKTPELHFKYDESLE 103
Query: 178 RGSRVIAILDRIKAEK 193
RG + A++D++ AEK
Sbjct: 104 RGLNLSALIDQVAAEK 119
>gi|392426762|ref|YP_006467756.1| ribosome-binding factor A [Desulfosporosinus acidiphilus SJ4]
gi|391356725|gb|AFM42424.1| ribosome-binding factor A [Desulfosporosinus acidiphilus SJ4]
Length = 124
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 53/94 (56%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEI 168
T++ V+V+ DL KVYVSV G + +V++ L A + RS++G+R++LR P I
Sbjct: 31 GFVTVTSVDVANDLAHAKVYVSVMGSEEDGKVSLDILNRAAGFFRSEIGKRIRLRHVPAI 90
Query: 169 RFIEDESFERGSRVIAILDRIKAEKEAAKSKNKE 202
F+ D S + G+ + +L + A + K + +
Sbjct: 91 VFVNDPSIQHGAHIAKLLRDVGAADDIDKDETHD 124
>gi|57234294|ref|YP_181705.1| ribosome-binding factor A [Dehalococcoides ethenogenes 195]
gi|123618614|sp|Q3Z7U4.1|RBFA_DEHE1 RecName: Full=Ribosome-binding factor A
gi|57224742|gb|AAW39799.1| ribosome-binding factor A [Dehalococcoides ethenogenes 195]
Length = 118
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 52/86 (60%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLR 163
D L +L ++++V+VS D++ VYVS D K+ +A L + A + R+++ ++ +R
Sbjct: 26 DPRLDTLLSVNEVDVSEDMRHATVYVSHLAGDEHKDEILAALNAAAGFFRTEIAKKTDIR 85
Query: 164 LTPEIRFIEDESFERGSRVIAILDRI 189
P FI D++ ERG R+ ++DR+
Sbjct: 86 YMPVFNFIWDDTIERGVRLNTLIDRV 111
>gi|433536989|ref|ZP_20493494.1| ribosome-binding factor A [Neisseria meningitidis 77221]
gi|432273925|gb|ELL29022.1| ribosome-binding factor A [Neisseria meningitidis 77221]
Length = 123
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 71/136 (52%), Gaps = 18/136 (13%)
Query: 58 RKTVKCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVE 117
RK + A RVK +QI REL++++ T G + T+++VE
Sbjct: 2 RKPQRGYARQDRVK---EQIMRELAELVRT--------------GLKDPRTGFITVNEVE 44
Query: 118 VSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFE 177
V+ D V+ +V D +E+ L+ ++RS+L +R+KL TPE+ F DES E
Sbjct: 45 VTRDYSHATVFYTVLNQD-AREITEEVLEHARGHLRSELAKRIKLFKTPELHFKYDESLE 103
Query: 178 RGSRVIAILDRIKAEK 193
RG + +++D++ AEK
Sbjct: 104 RGMSISSLIDQVAAEK 119
>gi|78778501|ref|YP_396613.1| ribosome-binding factor A [Prochlorococcus marinus str. MIT 9312]
gi|123554790|sp|Q31D68.1|RBFA_PROM9 RecName: Full=Ribosome-binding factor A
gi|78712000|gb|ABB49177.1| ribosome-binding factor A [Prochlorococcus marinus str. MIT 9312]
Length = 130
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 66/127 (51%), Gaps = 12/127 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
M N R+ V+ +++E++ +L D L D IS +++S DLQ
Sbjct: 1 MPNNFRLAKVSSLLKKEITLILQND------------LENDLIRDYFVNISKIDLSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K+Y++ + ++ +A L + ++R+ LG+R+++R PEI F ED ++G V+
Sbjct: 49 HCKIYITSTAKETVRKEIVANLNTAKSFIRNNLGKRIEMRRVPEIIFKEDIVLDKGLSVL 108
Query: 184 AILDRIK 190
+LD +K
Sbjct: 109 KLLDELK 115
>gi|444919480|ref|ZP_21239500.1| Ribosome-binding factor A [Cystobacter fuscus DSM 2262]
gi|444708422|gb|ELW49488.1| Ribosome-binding factor A [Cystobacter fuscus DSM 2262]
Length = 119
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 72/133 (54%), Gaps = 14/133 (10%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
M+ R + V ++IQ + ML + L + +G Y+ TI+ V+VS DL+
Sbjct: 1 MSTSNRPERVGQEIQAAMGRMLTRGE------LKDPRIG---YI----TITGVKVSPDLK 47
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
++Y S+ G ++ ++ GL++ ++R Q+ + +R++PE+ F DES ERG R+
Sbjct: 48 TARIYYSMMGSEQERKETHKGLEAAKGFIRRQITEAVNMRVSPEVFFTFDESLERGDRIE 107
Query: 184 AILDRIKAEKEAA 196
+L +K EKE
Sbjct: 108 RLLREVK-EKEGG 119
>gi|56478756|ref|YP_160345.1| ribosome-binding factor A [Aromatoleum aromaticum EbN1]
gi|61214724|sp|Q5NZS0.1|RBFA_AZOSE RecName: Full=Ribosome-binding factor A
gi|56314799|emb|CAI09444.1| ribosome-binding factor A [Aromatoleum aromaticum EbN1]
Length = 127
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 73/134 (54%), Gaps = 14/134 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + VA+Q++REL++++ + + + +G T++DVE++ D KV+
Sbjct: 7 RSQRVAEQVRRELAELIRLE-------VKDPRVG-------FITLTDVEITPDYAHAKVF 52
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+ + G + + GL + ++R +LG+R+++ PE+ F D S ERGSR+ ++D+
Sbjct: 53 FTSMKGEEGLDEILTGLHRASGFLRRELGKRVRIHTLPELHFHYDSSVERGSRMSQLIDQ 112
Query: 189 IKAEKEAAKSKNKE 202
+ + +A + E
Sbjct: 113 VVRDDDARHKDDPE 126
>gi|404378551|ref|ZP_10983640.1| ribosome-binding factor A [Simonsiella muelleri ATCC 29453]
gi|294483679|gb|EFG31363.1| ribosome-binding factor A [Simonsiella muelleri ATCC 29453]
Length = 123
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 16/125 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R+ V +Q+ REL++++ T G + L TI+DVEV+ D V+
Sbjct: 11 RIDRVKEQVMRELAELIRT--------------GLKDPRAGLITINDVEVTRDYSHATVF 56
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+V DR + L+ ++RS+L +R+ + TPE+ F DES ERG + ++D+
Sbjct: 57 YTVLSGDR--TASAEALEHAKGFLRSELAKRISVFRTPELHFQYDESLERGVNLAHLIDQ 114
Query: 189 IKAEK 193
+ +EK
Sbjct: 115 VASEK 119
>gi|338741573|ref|YP_004678535.1| ribosome-binding factor A [Hyphomicrobium sp. MC1]
gi|337762136|emb|CCB67971.1| Ribosome-binding factor A [Hyphomicrobium sp. MC1]
Length = 132
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLR 163
D S + TI +V +S DL++ VYV G + K V I L KY+R+++ + LR
Sbjct: 40 DVLASHVITIPEVRLSPDLKLATVYVMPLGGNDVKPV-IEALTRNKKYIRAEVAHTLNLR 98
Query: 164 LTPEIRFIEDESFERGSRVIAILDRIKAEKEAAK 197
P++RF EDE+FE +R+ +LD + +++ K
Sbjct: 99 YAPDLRFREDETFEEATRIDRLLDSERVQRDIKK 132
>gi|297571196|ref|YP_003696970.1| ribosome-binding factor A [Arcanobacterium haemolyticum DSM 20595]
gi|296931543|gb|ADH92351.1| ribosome-binding factor A [Arcanobacterium haemolyticum DSM 20595]
Length = 162
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 62/107 (57%), Gaps = 15/107 (14%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
M NPR K VA++IQ+ ++ ML DK ++ + LG + TI+DV V+ DLQ
Sbjct: 1 MVNPRAAK-VAERIQQVVASML--DKQIK-----DPRLG-------MVTITDVRVTGDLQ 45
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRF 170
V+ +VFG + + + A LKS +RS +G+++ LRLTP + F
Sbjct: 46 HADVFYTVFGSEHDAKNSGAALKSATGMIRSAVGKQLGLRLTPTLAF 92
>gi|418292349|ref|ZP_12904292.1| ribosome-binding factor A [Pseudomonas stutzeri ATCC 14405 = CCUG
16156]
gi|379063775|gb|EHY76518.1| ribosome-binding factor A [Pseudomonas stutzeri ATCC 14405 = CCUG
16156]
Length = 129
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 69/128 (53%), Gaps = 19/128 (14%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + LG L TI+ V+VS DL K++
Sbjct: 7 RTQRIGDQMQRELALLIQRE-------IKDPRLG-------LVTITAVDVSRDLSHAKIF 52
Query: 129 VSVFGDDRGKEVAIAG----LKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIA 184
+++ G D +E A+ G L A ++R QLG+ MKLR P++ F D S RG + +
Sbjct: 53 ITIMGQDDDQE-AVKGNLRILNDAAGFLRMQLGKSMKLRTVPQLHFNYDASIRRGVELSS 111
Query: 185 ILDRIKAE 192
+++R AE
Sbjct: 112 LIERAVAE 119
>gi|300897931|ref|ZP_07116310.1| ribosome-binding factor A [Escherichia coli MS 198-1]
gi|301022022|ref|ZP_07185965.1| ribosome-binding factor A [Escherichia coli MS 69-1]
gi|387608891|ref|YP_006097747.1| ribosome-binding factor A [Escherichia coli 042]
gi|284923191|emb|CBG36285.1| ribosome-binding factor A [Escherichia coli 042]
gi|300358361|gb|EFJ74231.1| ribosome-binding factor A [Escherichia coli MS 198-1]
gi|300397737|gb|EFJ81275.1| ribosome-binding factor A [Escherichia coli MS 69-1]
Length = 143
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 69/124 (55%), Gaps = 20/124 (16%)
Query: 62 KCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSAD 121
K P+RV A+++Q+E++ +LQ + D L +TT+S VE+S D
Sbjct: 13 KEFGRPQRV---AQEMQKEIA------LILQREI-------KDPRLGMMTTVSGVEMSRD 56
Query: 122 LQVVKVYVSVFGDDRGKEVAIAGLKS---KAKYVRSQLGRRMKLRLTPEIRFIEDESFER 178
L KVYV+ F +D+ ++ AG+K+ + ++RS LG+ M+LR+ PE+ F D S
Sbjct: 57 LAYAKVYVT-FLNDKDEDAVKAGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNSLVE 115
Query: 179 GSRV 182
G R+
Sbjct: 116 GMRM 119
>gi|15924260|ref|NP_371794.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
Mu50]
gi|15926853|ref|NP_374386.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
N315]
gi|21282882|ref|NP_645970.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus MW2]
gi|49483433|ref|YP_040657.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
MRSA252]
gi|49486109|ref|YP_043330.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57651840|ref|YP_186146.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus COL]
gi|82750871|ref|YP_416612.1| ribosome-binding factor A [Staphylococcus aureus RF122]
gi|87161703|ref|YP_493860.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|88194980|ref|YP_499780.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus NCTC
8325]
gi|150393819|ref|YP_001316494.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus JH1]
gi|156979591|ref|YP_001441850.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus Mu3]
gi|161509436|ref|YP_001575095.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|221142504|ref|ZP_03566997.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus str.
JKD6009]
gi|253315626|ref|ZP_04838839.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus str.
CF-Marseille]
gi|255006057|ref|ZP_05144658.2| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
Mu50-omega]
gi|262048160|ref|ZP_06021047.1| ribosome-binding factor A [Staphylococcus aureus D30]
gi|262051332|ref|ZP_06023555.1| ribosome-binding factor A [Staphylococcus aureus 930918-3]
gi|269202887|ref|YP_003282156.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
ED98]
gi|284024263|ref|ZP_06378661.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus 132]
gi|294848266|ref|ZP_06789013.1| ribosome-binding factor A [Staphylococcus aureus A9754]
gi|295406207|ref|ZP_06816014.1| ribosome-binding factor A [Staphylococcus aureus A8819]
gi|295427757|ref|ZP_06820389.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
EMRSA16]
gi|296274828|ref|ZP_06857335.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus MR1]
gi|297244435|ref|ZP_06928318.1| ribosome-binding factor A [Staphylococcus aureus A8796]
gi|379014461|ref|YP_005290697.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
VC40]
gi|384547513|ref|YP_005736766.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
ED133]
gi|384550027|ref|YP_005739279.1| ribosome-binding factor A (P15B PROTEIN) [Staphylococcus aureus
subsp. aureus JKD6159]
gi|384864497|ref|YP_005749856.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|385781498|ref|YP_005757669.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
11819-97]
gi|386830805|ref|YP_006237459.1| putative ribosome-binding factor A [Staphylococcus aureus subsp.
aureus HO 5096 0412]
gi|387150413|ref|YP_005741977.1| Ribosome-binding factor A [Staphylococcus aureus 04-02981]
gi|415683860|ref|ZP_11449062.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CGS00]
gi|415686462|ref|ZP_11450551.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CGS01]
gi|415691120|ref|ZP_11453359.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CGS03]
gi|417797938|ref|ZP_12445124.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21310]
gi|418281402|ref|ZP_12894213.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21178]
gi|418282907|ref|ZP_12895664.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21202]
gi|418424411|ref|ZP_12997533.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
VRS1]
gi|418427406|ref|ZP_13000418.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
VRS2]
gi|418430246|ref|ZP_13003162.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
VRS3a]
gi|418433212|ref|ZP_13005989.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
VRS4]
gi|418436883|ref|ZP_13008685.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
VRS5]
gi|418439755|ref|ZP_13011462.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
VRS6]
gi|418442807|ref|ZP_13014409.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
VRS7]
gi|418445866|ref|ZP_13017342.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
VRS8]
gi|418448810|ref|ZP_13020202.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
VRS9]
gi|418451634|ref|ZP_13022968.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
VRS10]
gi|418454690|ref|ZP_13025952.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
VRS11a]
gi|418457566|ref|ZP_13028769.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
VRS11b]
gi|418569071|ref|ZP_13133411.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21272]
gi|418572196|ref|ZP_13136408.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21333]
gi|418579104|ref|ZP_13143199.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIG1114]
gi|418582104|ref|ZP_13146182.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIG1605]
gi|418661549|ref|ZP_13223134.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
IS-122]
gi|418875206|ref|ZP_13429466.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIGC93]
gi|418878119|ref|ZP_13432354.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIG1165]
gi|418880949|ref|ZP_13435168.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIG1213]
gi|418883877|ref|ZP_13438072.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIG1769]
gi|418886532|ref|ZP_13440680.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIG1150]
gi|418889063|ref|ZP_13443199.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIG1524]
gi|418891903|ref|ZP_13446018.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIG1176]
gi|418894970|ref|ZP_13449065.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIG1057]
gi|418897808|ref|ZP_13451878.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIGC341D]
gi|418900678|ref|ZP_13454735.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIG1214]
gi|418903483|ref|ZP_13457524.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIG1770]
gi|418906206|ref|ZP_13460233.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|418908981|ref|ZP_13462984.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIG149]
gi|418911877|ref|ZP_13465860.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIG547]
gi|418914368|ref|ZP_13468340.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|418917065|ref|ZP_13471024.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIG1267]
gi|418920349|ref|ZP_13474282.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIGC348]
gi|418922852|ref|ZP_13476769.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIG1233]
gi|418925507|ref|ZP_13479409.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIG2018]
gi|418928530|ref|ZP_13482416.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIG1612]
gi|418931341|ref|ZP_13485182.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIG1750]
gi|418934173|ref|ZP_13487996.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIGC128]
gi|418982183|ref|ZP_13529891.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIG1242]
gi|418985852|ref|ZP_13533538.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIG1500]
gi|418988092|ref|ZP_13535765.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIG1835]
gi|418991134|ref|ZP_13538795.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIG1096]
gi|418993891|ref|ZP_13541527.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIG290]
gi|419784979|ref|ZP_14310737.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
IS-M]
gi|448741787|ref|ZP_21723744.1| ribosome-binding factor A [Staphylococcus aureus KT/314250]
gi|448743342|ref|ZP_21725251.1| ribosome-binding factor A [Staphylococcus aureus KT/Y21]
gi|54039026|sp|P65967.1|RBFA_STAAN RecName: Full=Ribosome-binding factor A
gi|54039027|sp|P65968.1|RBFA_STAAW RecName: Full=Ribosome-binding factor A
gi|54041787|sp|P65966.1|RBFA_STAAM RecName: Full=Ribosome-binding factor A
gi|56749520|sp|Q6G9U3.1|RBFA_STAAS RecName: Full=Ribosome-binding factor A
gi|56749567|sp|Q6GHG5.1|RBFA_STAAR RecName: Full=Ribosome-binding factor A
gi|61214665|sp|Q5HGG1.1|RBFA_STAAC RecName: Full=Ribosome-binding factor A
gi|122540682|sp|Q2G2Q4.1|RBFA_STAA8 RecName: Full=Ribosome-binding factor A
gi|123486171|sp|Q2FHG8.1|RBFA_STAA3 RecName: Full=Ribosome-binding factor A
gi|123549084|sp|Q2YXP6.1|RBFA_STAAB RecName: Full=Ribosome-binding factor A
gi|166219410|sp|A7X1Q2.1|RBFA_STAA1 RecName: Full=Ribosome-binding factor A
gi|172049025|sp|A6QGG9.2|RBFA_STAAE RecName: Full=Ribosome-binding factor A
gi|182676603|sp|A5ISF4.2|RBFA_STAA9 RecName: Full=Ribosome-binding factor A
gi|189039563|sp|A6U189.1|RBFA_STAA2 RecName: Full=Ribosome-binding factor A
gi|189039564|sp|A8Z3V0.1|RBFA_STAAT RecName: Full=Ribosome-binding factor A
gi|13701070|dbj|BAB42365.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
N315]
gi|14247040|dbj|BAB57432.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
Mu50]
gi|21204321|dbj|BAB95018.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus MW2]
gi|49241562|emb|CAG40248.1| putative ribosome-binding factor A [Staphylococcus aureus subsp.
aureus MRSA252]
gi|49244552|emb|CAG42981.1| putative ribosome-binding factor A [Staphylococcus aureus subsp.
aureus MSSA476]
gi|57286026|gb|AAW38120.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus COL]
gi|82656402|emb|CAI80821.1| ribosome-binding factor A [Staphylococcus aureus RF122]
gi|87127677|gb|ABD22191.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87202538|gb|ABD30348.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus NCTC
8325]
gi|149946271|gb|ABR52207.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus JH1]
gi|156721726|dbj|BAF78143.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus Mu3]
gi|160368245|gb|ABX29216.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|259160707|gb|EEW45728.1| ribosome-binding factor A [Staphylococcus aureus 930918-3]
gi|259163726|gb|EEW48281.1| ribosome-binding factor A [Staphylococcus aureus D30]
gi|262075177|gb|ACY11150.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
ED98]
gi|285816952|gb|ADC37439.1| Ribosome-binding factor A [Staphylococcus aureus 04-02981]
gi|294825066|gb|EFG41488.1| ribosome-binding factor A [Staphylococcus aureus A9754]
gi|294968795|gb|EFG44817.1| ribosome-binding factor A [Staphylococcus aureus A8819]
gi|295128115|gb|EFG57749.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
EMRSA16]
gi|297178465|gb|EFH37711.1| ribosome-binding factor A [Staphylococcus aureus A8796]
gi|298694562|gb|ADI97784.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
ED133]
gi|302332876|gb|ADL23069.1| ribosome-binding factor A (P15B PROTEIN) [Staphylococcus aureus
subsp. aureus JKD6159]
gi|312829664|emb|CBX34506.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|315131064|gb|EFT87048.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CGS03]
gi|315194158|gb|EFU24551.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CGS00]
gi|315198512|gb|EFU28841.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CGS01]
gi|334277060|gb|EGL95299.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21310]
gi|364522487|gb|AEW65237.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
11819-97]
gi|365165224|gb|EHM57052.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21178]
gi|365168504|gb|EHM59842.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21202]
gi|371978256|gb|EHO95506.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21272]
gi|371984680|gb|EHP01789.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21333]
gi|374363158|gb|AEZ37263.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
VC40]
gi|375038731|gb|EHS31692.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
IS-122]
gi|377694241|gb|EHT18606.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIG1165]
gi|377694776|gb|EHT19140.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIG1057]
gi|377697131|gb|EHT21486.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIG1114]
gi|377703146|gb|EHT27462.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIG1214]
gi|377704464|gb|EHT28773.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIG1242]
gi|377705670|gb|EHT29974.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIG1500]
gi|377710514|gb|EHT34752.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIG1605]
gi|377714623|gb|EHT38822.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIG1750]
gi|377714964|gb|EHT39162.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIG1769]
gi|377719880|gb|EHT44050.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIG1835]
gi|377723256|gb|EHT47381.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIG1096]
gi|377725255|gb|EHT49370.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIG547]
gi|377725485|gb|EHT49598.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIG1150]
gi|377731235|gb|EHT55292.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIG1176]
gi|377731842|gb|EHT55895.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIG1213]
gi|377736175|gb|EHT60205.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIG1233]
gi|377738442|gb|EHT62451.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIG1612]
gi|377742498|gb|EHT66483.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIG1770]
gi|377744576|gb|EHT68553.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIG2018]
gi|377745941|gb|EHT69916.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIG290]
gi|377750239|gb|EHT74177.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIG1267]
gi|377754019|gb|EHT77929.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIG149]
gi|377754573|gb|EHT78482.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIG1524]
gi|377757870|gb|EHT81758.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|377760843|gb|EHT84719.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIGC341D]
gi|377765506|gb|EHT89356.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|377765708|gb|EHT89557.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIGC348]
gi|377770266|gb|EHT94028.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIGC93]
gi|377770916|gb|EHT94675.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CIGC128]
gi|383363580|gb|EID40912.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
IS-M]
gi|385196197|emb|CCG15818.1| putative ribosome-binding factor A [Staphylococcus aureus subsp.
aureus HO 5096 0412]
gi|387718641|gb|EIK06599.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
VRS3a]
gi|387718993|gb|EIK06949.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
VRS2]
gi|387720318|gb|EIK08230.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
VRS1]
gi|387725652|gb|EIK13256.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
VRS4]
gi|387727987|gb|EIK15487.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
VRS5]
gi|387730717|gb|EIK18078.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
VRS6]
gi|387735794|gb|EIK22904.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
VRS8]
gi|387737472|gb|EIK24538.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
VRS7]
gi|387738026|gb|EIK25080.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
VRS9]
gi|387744515|gb|EIK31279.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
VRS10]
gi|387745805|gb|EIK32555.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
VRS11a]
gi|387747298|gb|EIK34007.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
VRS11b]
gi|445547425|gb|ELY15694.1| ribosome-binding factor A [Staphylococcus aureus KT/314250]
gi|445563271|gb|ELY19433.1| ribosome-binding factor A [Staphylococcus aureus KT/Y21]
Length = 116
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 65/114 (57%), Gaps = 14/114 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + V +Q+++EL D ++ +KV + +G TI+DV ++ DL KV+
Sbjct: 5 RAERVGEQMKKELMD-IINNKV------KDPRVG-------FITITDVVLTNDLSQAKVF 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
++V G+D+ E L +++S+LG RM+LR+ PE+ + D+S E G+++
Sbjct: 51 LTVLGNDKEVENTFKALDKAKGFIKSELGSRMRLRIMPELMYEYDQSIEYGNKI 104
>gi|441182564|ref|ZP_20970325.1| ribosome-binding factor A [Streptomyces rimosus subsp. rimosus ATCC
10970]
gi|440614175|gb|ELQ77479.1| ribosome-binding factor A [Streptomyces rimosus subsp. rimosus ATCC
10970]
Length = 148
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLR 163
D L S TI+D V+ DL+ V+ +V+GDD + A AGL+S +RS++GR ++
Sbjct: 28 DPRLGSHVTITDTRVTGDLREATVFYTVYGDDEDRASAAAGLESAKGILRSEVGRAAGVK 87
Query: 164 LTPEIRFIEDESFERGSRVIAILDRIKA 191
TP + F+ D E + +LD+ +A
Sbjct: 88 FTPTLTFVADALPENAKTIEDLLDKARA 115
>gi|85860519|ref|YP_462721.1| ribosome-binding factor A [Syntrophus aciditrophicus SB]
gi|123517498|sp|Q2LWT9.1|RBFA_SYNAS RecName: Full=Ribosome-binding factor A
gi|85723610|gb|ABC78553.1| ribosome-binding factor A [Syntrophus aciditrophicus SB]
Length = 123
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 14/135 (10%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
M +R VA ++ E++D+LL D +S LT ++ V+VS DL+
Sbjct: 1 MTQFKRADRVADLVKMEIADILLRRI-------------RDPRVSRLT-VTGVKVSDDLR 46
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
+++ G+D + GL+ ++R +LG+R+KLR P++ F D SF GSR+
Sbjct: 47 TARIFFVEMGEDSCHPETLEGLQKAGGFIRKELGKRLKLRYVPDLIFKPDSSFAYGSRID 106
Query: 184 AILDRIKAEKEAAKS 198
+++ I E+E S
Sbjct: 107 QLINEIHREEENDGS 121
>gi|114571585|ref|YP_758265.1| ribosome-binding factor A [Maricaulis maris MCS10]
gi|122314885|sp|Q0AK66.1|RBFA_MARMM RecName: Full=Ribosome-binding factor A
gi|114342047|gb|ABI67327.1| ribosome-binding factor A [Maricaulis maris MCS10]
Length = 141
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 108 SSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIA-GLKSKAKYVRSQLGRRMKLRLTP 166
+ ++++V S DL+V KVYV+ G RG +A GL A ++R +LGR ++++ TP
Sbjct: 43 GQMISVTEVRPSPDLRVAKVYVAPLG--RGDSAKLAAGLNRCAAFLRGRLGREIEMKFTP 100
Query: 167 EIRFIEDESFERGSRVIAILDRIKAEKEAAKSKNKE 202
E+ F D SF+ S V +L+R K+ ++ E
Sbjct: 101 ELHFHADNSFDTASHVDDLLNRPTVRKDLDATRGSE 136
>gi|282916530|ref|ZP_06324288.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
D139]
gi|283770334|ref|ZP_06343226.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus H19]
gi|282319017|gb|EFB49369.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
D139]
gi|283460481|gb|EFC07571.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus H19]
Length = 119
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 65/114 (57%), Gaps = 14/114 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + V +Q+++EL D ++ +KV + +G TI+DV ++ DL KV+
Sbjct: 8 RAERVGEQMKKELMD-IINNKV------KDPRVG-------FITITDVVLTNDLSQAKVF 53
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
++V G+D+ E L +++S+LG RM+LR+ PE+ + D+S E G+++
Sbjct: 54 LTVLGNDKEVENTFKALDKAKGFIKSELGSRMRLRIMPELMYEYDQSIEYGNKI 107
>gi|161506149|ref|YP_001573261.1| ribosome-binding factor A [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:- str. RSK2980]
gi|160867496|gb|ABX24119.1| hypothetical protein SARI_04339 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 145
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 69/124 (55%), Gaps = 20/124 (16%)
Query: 62 KCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSAD 121
K P+RV A+++Q+E++ +LQ + D L +TT+S VE+S D
Sbjct: 15 KEFGRPQRV---AQEMQKEIA------IILQREI-------KDPRLGMMTTVSGVEMSRD 58
Query: 122 LQVVKVYVSVFGDDRGKEVAIAGLKS---KAKYVRSQLGRRMKLRLTPEIRFIEDESFER 178
L KVYV+ F +D+ ++ AG+K+ + ++RS LG+ M+LR+ PE+ F D S
Sbjct: 59 LAYAKVYVT-FLNDKDEDAVKAGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNSLVE 117
Query: 179 GSRV 182
G R+
Sbjct: 118 GMRM 121
>gi|336172109|ref|YP_004579247.1| ribosome-binding factor A [Lacinutrix sp. 5H-3-7-4]
gi|334726681|gb|AEH00819.1| Ribosome-binding factor A [Lacinutrix sp. 5H-3-7-4]
Length = 133
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 63/112 (56%), Gaps = 15/112 (13%)
Query: 68 RRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKV 127
+R K + +QR+L D+L T A G R + + ++S V V+ DL V KV
Sbjct: 7 QRQKKIGSVLQRDLVDILQT----------AATQGGMRGV--IISVSKVSVTVDLSVAKV 54
Query: 128 YVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMK--LRLTPEIRFIEDESFE 177
Y+S+F +D+ KE+ + G+KS ++R +L +R K LR P++ F D+S E
Sbjct: 55 YLSIFPNDKAKEL-VEGIKSNQPFIRHELAKRTKNQLRRMPQLYFFVDDSLE 105
>gi|225023302|ref|ZP_03712494.1| hypothetical protein EIKCOROL_00155 [Eikenella corrodens ATCC
23834]
gi|224943947|gb|EEG25156.1| hypothetical protein EIKCOROL_00155 [Eikenella corrodens ATCC
23834]
Length = 123
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 71/135 (52%), Gaps = 18/135 (13%)
Query: 59 KTVKCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEV 118
KT + A RV+ +QI REL++++ T G + TI++VE+
Sbjct: 3 KTHRGYARQDRVR---EQIMRELAELVRT--------------GLKDPRAGFITINEVEL 45
Query: 119 SADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFER 178
+ D VY +V DD +E+ L+ ++RS+L RR+KL TPE+ F D+S ER
Sbjct: 46 TRDYSHATVYYTVL-DDATREITAEALEHAKGHLRSELSRRIKLFKTPELHFKYDQSLER 104
Query: 179 GSRVIAILDRIKAEK 193
G + +++++ AE+
Sbjct: 105 GMSISQLIEQVAAEE 119
>gi|150016087|ref|YP_001308341.1| ribosome-binding factor A [Clostridium beijerinckii NCIMB 8052]
gi|189039533|sp|A6LSQ5.1|RBFA_CLOB8 RecName: Full=Ribosome-binding factor A
gi|149902552|gb|ABR33385.1| ribosome-binding factor A [Clostridium beijerinckii NCIMB 8052]
Length = 118
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 75/132 (56%), Gaps = 15/132 (11%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MAN R + + ++ +RE+S+ L+ ++V D L+++ +++DV+V+ DL+
Sbjct: 1 MANYRGGR-INEEFKREISN-LIQNEV------------KDPRLTAMISVTDVKVTKDLR 46
Query: 124 VVKVYVSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
KVYVS+F DD K+ + LK+ + ++R +G+++ LR TPEI D+S G +
Sbjct: 47 YAKVYVSIFSKDDEEKKNNLEALKNASGFIRKSVGQKINLRHTPEIIIELDDSINYGMHM 106
Query: 183 IAILDRIKAEKE 194
++ RI E
Sbjct: 107 DELIQRISKGNE 118
>gi|237706080|ref|ZP_04536561.1| ribosome-binding factor A [Escherichia sp. 3_2_53FAA]
gi|293412542|ref|ZP_06655265.1| ribosome-binding factor A [Escherichia coli B354]
gi|293416600|ref|ZP_06659239.1| ribosome-binding factor A [Escherichia coli B185]
gi|332280002|ref|ZP_08392415.1| ribosome-binding factor A [Shigella sp. D9]
gi|26110178|gb|AAN82364.1|AE016767_124 Ribosome-binding factor A [Escherichia coli CFT073]
gi|91074162|gb|ABE09043.1| ribosome-binding factor A [Escherichia coli UTI89]
gi|226899120|gb|EEH85379.1| ribosome-binding factor A [Escherichia sp. 3_2_53FAA]
gi|291431956|gb|EFF04939.1| ribosome-binding factor A [Escherichia coli B185]
gi|291469313|gb|EFF11804.1| ribosome-binding factor A [Escherichia coli B354]
gi|332102354|gb|EGJ05700.1| ribosome-binding factor A [Shigella sp. D9]
Length = 139
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 69/124 (55%), Gaps = 20/124 (16%)
Query: 62 KCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSAD 121
K P+RV A+++Q+E++ +LQ + D L +TT+S VE+S D
Sbjct: 9 KEFGRPQRV---AQEMQKEIA------LILQREI-------KDPRLGMMTTVSGVEMSRD 52
Query: 122 LQVVKVYVSVFGDDRGKEVAIAGLKS---KAKYVRSQLGRRMKLRLTPEIRFIEDESFER 178
L KVYV+ F +D+ ++ AG+K+ + ++RS LG+ M+LR+ PE+ F D S
Sbjct: 53 LAYAKVYVT-FLNDKDEDAVKAGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNSLVE 111
Query: 179 GSRV 182
G R+
Sbjct: 112 GMRM 115
>gi|408417920|ref|YP_006759334.1| ribosome-binding factor A RbfA [Desulfobacula toluolica Tol2]
gi|405105133|emb|CCK78630.1| RbfA: ribosome-binding factor A [Desulfobacula toluolica Tol2]
Length = 122
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 48/73 (65%)
Query: 110 LTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIR 169
+ TIS V +S+DL+V +Y++VFGD + + A+ G K +++ + ++ L+ PE+R
Sbjct: 33 MVTISGVNLSSDLRVADIYIAVFGDKKRIKDALNGFKKSKGFIKKSIAPKLGLKYMPELR 92
Query: 170 FIEDESFERGSRV 182
F D++F++ +++
Sbjct: 93 FFHDDTFDKAAKM 105
>gi|127513754|ref|YP_001094951.1| ribosome-binding factor A [Shewanella loihica PV-4]
gi|166219404|sp|A3QGU4.1|RBFA_SHELP RecName: Full=Ribosome-binding factor A
gi|126639049|gb|ABO24692.1| ribosome-binding factor A [Shewanella loihica PV-4]
Length = 140
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 64/108 (59%), Gaps = 2/108 (1%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGK-EVAIAGLKSKAKYVRSQLGRRMKLRLTPE 167
+ T++DV+VS DL KVYV+ F +D+ E +A L++ A YVRS + RMKLR+ PE
Sbjct: 33 GMVTVNDVDVSRDLNYAKVYVTFFEEDKAVVEEKLAALEAAAGYVRSLVAGRMKLRVMPE 92
Query: 168 IRFIEDESFERGSRVIAILDR-IKAEKEAAKSKNKEQFESPDLPEDER 214
IRFI D S G R+ ++ + I +K A +E E D +D++
Sbjct: 93 IRFIYDASLIEGMRMSNLVSQVITKDKAKAAEHGREDEELDDTEQDDK 140
>gi|429210160|ref|ZP_19201327.1| ribosome-binding factor A [Pseudomonas sp. M1]
gi|428158934|gb|EKX05480.1| ribosome-binding factor A [Pseudomonas sp. M1]
Length = 129
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 69/127 (54%), Gaps = 17/127 (13%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ +L+ +V + LG L TI+ V+V+ DL KV+
Sbjct: 7 RTQRIGDQMQRELA-LLIQREV------KDPRLG-------LVTITGVDVARDLSHAKVF 52
Query: 129 VSVFGDDRGKEVA---IAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
++V G D E+ ++ L A ++R LG+ MKLR P++ F D S RG+ + A+
Sbjct: 53 ITVMGQDDNAELIKQNVSILNDAAGFLRMHLGKAMKLRSVPQLHFSYDASIRRGAELSAL 112
Query: 186 LDRIKAE 192
++R AE
Sbjct: 113 IERAVAE 119
>gi|390629758|ref|ZP_10257750.1| Ribosome-binding factor A [Weissella confusa LBAE C39-2]
gi|390484930|emb|CCF30098.1| Ribosome-binding factor A [Weissella confusa LBAE C39-2]
Length = 118
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 65/115 (56%), Gaps = 15/115 (13%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
RV + ++IQRE++D+LL + G T++ VEV+ DLQ K+Y
Sbjct: 7 RVGRLEQEIQREVNDLLLK------RIRDPRVEG--------VTVTGVEVTGDLQQAKIY 52
Query: 129 VSVFGDDRG-KEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
SV + + A AGL++ +R +LG R+++ TPE++F++DES + G+++
Sbjct: 53 YSVLSELASVNQKAAAGLEAATGLIRKELGSRLQIYKTPELKFVKDESVQYGNKI 107
>gi|148976706|ref|ZP_01813393.1| ribosome-binding factor A [Vibrionales bacterium SWAT-3]
gi|417948904|ref|ZP_12592045.1| ribosome-binding factor A [Vibrio splendidus ATCC 33789]
gi|145964057|gb|EDK29315.1| ribosome-binding factor A [Vibrionales bacterium SWAT-3]
gi|342809035|gb|EGU44167.1| ribosome-binding factor A [Vibrio splendidus ATCC 33789]
Length = 137
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 76/140 (54%), Gaps = 19/140 (13%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + V++Q+Q+EL+ +L + + ++ +G + TISDVEVS DL KV+
Sbjct: 7 RTQRVSQQLQKELALILQRE-------VRDSRIG-------MVTISDVEVSRDLAYAKVF 52
Query: 129 VSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSR----VI 183
V+ ++ E +A LK +R LG+R++ RLTPE+RF D + G R V
Sbjct: 53 VTFLCIGEQTPESCLAALKEHEVPIRMALGKRIRHRLTPEVRFTYDNTLVEGMRMSNLVS 112
Query: 184 AILDRIKAEKEAAKSKNKEQ 203
+L+ K ++EAA ++ Q
Sbjct: 113 EVLNDDKRKQEAAGRTDETQ 132
>gi|397688162|ref|YP_006525481.1| ribosome-binding factor A [Pseudomonas stutzeri DSM 10701]
gi|395809718|gb|AFN79123.1| ribosome-binding factor A [Pseudomonas stutzeri DSM 10701]
Length = 127
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 17/127 (13%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + LG L TI+ VEVS DL KV+
Sbjct: 7 RTQRIGDQMQRELASLIQRE-------IKDPRLG-------LITITGVEVSRDLSHAKVF 52
Query: 129 VSVFGDDRGKEVAIAGLK---SKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
++V G D ++ L+ + ++R QLG+ MKLR P++ F D S RG + ++
Sbjct: 53 ITVMGKDDDQDTVRENLRILNEASGFLRMQLGKAMKLRTVPQLHFNYDASVRRGVELASL 112
Query: 186 LDRIKAE 192
++R AE
Sbjct: 113 IERAVAE 119
>gi|90961549|ref|YP_535465.1| ribosome-binding factor A [Lactobacillus salivarius UCC118]
gi|122449169|sp|Q1WUF3.1|RBFA_LACS1 RecName: Full=Ribosome-binding factor A
gi|90820743|gb|ABD99382.1| Ribosome-binding factor A [Lactobacillus salivarius UCC118]
Length = 119
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 15/127 (11%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RV ++++IQRE++D+LL K ++ + + TI+ VEVS DLQ
Sbjct: 1 MAQHFRVGRLSQEIQREVNDILL--KRVRDPRVKDV------------TITGVEVSGDLQ 46
Query: 124 VVKVYVSVFGDDRGKEVAI-AGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
+Y S+ D E + GL +R +LG R+ + +TPEI+F D+S + G +
Sbjct: 47 HATIYYSILSDKASDEKKVQTGLDKATSLIRGELGHRLSIYVTPEIKFERDKSVQYGDHI 106
Query: 183 IAILDRI 189
+L ++
Sbjct: 107 NELLRKL 113
>gi|419160990|ref|ZP_13705488.1| ribosome-binding factor A [Escherichia coli DEC6D]
gi|419166041|ref|ZP_13710494.1| ribosome-binding factor A [Escherichia coli DEC6E]
gi|378005243|gb|EHV68248.1| ribosome-binding factor A [Escherichia coli DEC6D]
gi|378007939|gb|EHV70902.1| ribosome-binding factor A [Escherichia coli DEC6E]
Length = 133
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 70/124 (56%), Gaps = 20/124 (16%)
Query: 62 KCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSAD 121
K P+RV A+++Q+E+ A++ + + A R L +TT+S VE+S D
Sbjct: 3 KEFGRPQRV---AQEMQKEI------------ALILQREIKAPR-LGMMTTVSGVEMSRD 46
Query: 122 LQVVKVYVSVFGDDRGKEVAIAGLKS---KAKYVRSQLGRRMKLRLTPEIRFIEDESFER 178
L KVYV+ F +D+ ++ AG+K+ + ++RS LG+ M+LR+ PE+ F D S
Sbjct: 47 LAYAKVYVT-FLNDKDEDAVKAGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNSLVE 105
Query: 179 GSRV 182
G R+
Sbjct: 106 GMRM 109
>gi|345857840|ref|ZP_08810261.1| ribosome-binding factor A [Desulfosporosinus sp. OT]
gi|344329087|gb|EGW40444.1| ribosome-binding factor A [Desulfosporosinus sp. OT]
Length = 124
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 55/94 (58%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEI 168
T++ V+V+ DL KVY+SV G + + ++ L A ++R+++G+R++LR P I
Sbjct: 31 GFVTVTSVDVANDLAHAKVYISVLGSEDEGKASLDTLNRAAGFLRTEIGKRLRLRHVPSI 90
Query: 169 RFIEDESFERGSRVIAILDRIKAEKEAAKSKNKE 202
F+ D S + G+ + +L + +++K ++ E
Sbjct: 91 VFVYDPSIQHGAHIAKLLRDVSVSDDSSKDESHE 124
>gi|417714224|ref|ZP_12363182.1| ribosome-binding factor A [Shigella flexneri K-272]
gi|417719071|ref|ZP_12367962.1| ribosome-binding factor A [Shigella flexneri K-227]
gi|332999246|gb|EGK18832.1| ribosome-binding factor A [Shigella flexneri K-272]
gi|333014968|gb|EGK34312.1| ribosome-binding factor A [Shigella flexneri K-227]
Length = 133
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 69/124 (55%), Gaps = 20/124 (16%)
Query: 62 KCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSAD 121
K P+RV A+++Q+E++ +LQ + D L +TT+S VE+S D
Sbjct: 3 KEFGRPQRV---AQEMQKEIA------LILQREI-------KDPRLGMMTTVSSVEMSRD 46
Query: 122 LQVVKVYVSVFGDDRGKEVAIAGLKS---KAKYVRSQLGRRMKLRLTPEIRFIEDESFER 178
L KVYV+ F +D+ ++ AG+K+ + ++RS LG+ M+LR+ PE+ F D S
Sbjct: 47 LAYAKVYVT-FLNDKDEDAVKAGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNSLVE 105
Query: 179 GSRV 182
G R+
Sbjct: 106 GMRM 109
>gi|419954438|ref|ZP_14470576.1| ribosome-binding factor A [Pseudomonas stutzeri TS44]
gi|387968771|gb|EIK53058.1| ribosome-binding factor A [Pseudomonas stutzeri TS44]
Length = 130
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 69/128 (53%), Gaps = 19/128 (14%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + LG L TI+ V+VS DL K++
Sbjct: 7 RTQRIGDQMQRELAQLIQRE-------IKDPRLG-------LVTITGVDVSRDLSHAKIF 52
Query: 129 VSVFGDDRGKEVAIAG----LKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIA 184
+++ G D +E A+ G L A ++R QLG+ MKLR P++ F D S RG + +
Sbjct: 53 ITLMGQDDDEE-AVKGNLRILNEAAGFLRMQLGKAMKLRSVPQLHFNYDASIRRGVELSS 111
Query: 185 ILDRIKAE 192
+++R AE
Sbjct: 112 LIERAVAE 119
>gi|392373659|ref|YP_003205492.1| ribosome-binding factor A [Candidatus Methylomirabilis oxyfera]
gi|258591352|emb|CBE67651.1| Ribosome-binding factor A [Candidatus Methylomirabilis oxyfera]
Length = 119
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 66 NPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
RR V IQ E+S + +LQ P T++ V VS DLQ
Sbjct: 2 QGRRADRVGTLIQEEISRL-----ILQSVKDPRV---------RCATVTRVRVSDDLQHA 47
Query: 126 KVYVSVFGDDRGK-EVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFER 178
KVY++ G D+ + + A+ GLKS A ++R +LGRR+ LR PE+ F D+S E+
Sbjct: 48 KVYIASMGGDKERCQEALIGLKSAAGFLRGELGRRLCLRYIPELLFSLDDSLEQ 101
>gi|206895632|ref|YP_002247273.1| ribosome-binding factor A [Coprothermobacter proteolyticus DSM
5265]
gi|226736640|sp|B5Y926.1|RBFA_COPPD RecName: Full=Ribosome-binding factor A
gi|206738249|gb|ACI17327.1| ribosome-binding factor A [Coprothermobacter proteolyticus DSM
5265]
Length = 137
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 76/146 (52%), Gaps = 16/146 (10%)
Query: 67 PRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVK 126
P R + + + I++ELS +LL D + +R TI+DVE+S D + +K
Sbjct: 3 PLRKERLQQAIKQELSKILLED------------MNDERL--KFVTITDVELSDDQKYLK 48
Query: 127 VYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
VY S + E + L+ YV ++ R ++LR PEI+F D S ERG R++ +L
Sbjct: 49 VYFSTMPG-KNSEQILQSLERVKGYVSGEVARTLRLRFAPEIKFELDNSIERGVRMVKLL 107
Query: 187 DRIKAEKEAAKSKNKEQFESPDLPED 212
+ ++ + E + ++ E ES D E+
Sbjct: 108 EDLEKKDEVKEDESHED-ESTDHTEE 132
>gi|148267760|ref|YP_001246703.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus JH9]
gi|151221391|ref|YP_001332213.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus str.
Newman]
gi|253731889|ref|ZP_04866054.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253733492|ref|ZP_04867657.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
TCH130]
gi|257425324|ref|ZP_05601749.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
55/2053]
gi|257427985|ref|ZP_05604383.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
65-1322]
gi|257430618|ref|ZP_05607000.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
68-397]
gi|257433378|ref|ZP_05609736.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
E1410]
gi|257436220|ref|ZP_05612267.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
M876]
gi|257795674|ref|ZP_05644653.1| ribosome-binding factor A [Staphylococcus aureus A9781]
gi|258416077|ref|ZP_05682345.1| ribosome-binding factor A [Staphylococcus aureus A9763]
gi|258421660|ref|ZP_05684584.1| ribosome-binding factor A [Staphylococcus aureus A9719]
gi|258423889|ref|ZP_05686774.1| ribosome-binding factor A [Staphylococcus aureus A9635]
gi|258434816|ref|ZP_05688890.1| ribosome-binding factor A [Staphylococcus aureus A9299]
gi|258444608|ref|ZP_05692937.1| ribosome-binding factor A [Staphylococcus aureus A8115]
gi|258447559|ref|ZP_05695703.1| ribosome-binding factor A [Staphylococcus aureus A6300]
gi|258449401|ref|ZP_05697504.1| ribosome-binding factor A [Staphylococcus aureus A6224]
gi|258452569|ref|ZP_05700575.1| ribosome-binding factor A [Staphylococcus aureus A5948]
gi|258454780|ref|ZP_05702744.1| ribosome-binding factor A [Staphylococcus aureus A5937]
gi|282892758|ref|ZP_06300993.1| ribosome-binding factor A [Staphylococcus aureus A8117]
gi|282903825|ref|ZP_06311713.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
C160]
gi|282905588|ref|ZP_06313443.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282908563|ref|ZP_06316393.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282910842|ref|ZP_06318645.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282914047|ref|ZP_06321834.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
M899]
gi|282918969|ref|ZP_06326704.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
C427]
gi|282920514|ref|ZP_06328235.1| ribosome-binding factor A [Staphylococcus aureus A9765]
gi|282924092|ref|ZP_06331768.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
C101]
gi|282927612|ref|ZP_06335228.1| ribosome-binding factor A [Staphylococcus aureus A10102]
gi|283958013|ref|ZP_06375464.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
A017934/97]
gi|293501079|ref|ZP_06666930.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
58-424]
gi|293510041|ref|ZP_06668749.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
M809]
gi|297208084|ref|ZP_06924515.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|297591285|ref|ZP_06949923.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus MN8]
gi|300912165|ref|ZP_07129608.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
TCH70]
gi|304381166|ref|ZP_07363819.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|379020980|ref|YP_005297642.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
M013]
gi|384861864|ref|YP_005744584.1| ribosome-binding factor A (P15B PROTEIN) [Staphylococcus aureus
subsp. aureus str. JKD6008]
gi|384867845|ref|YP_005748041.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
TCH60]
gi|384869805|ref|YP_005752519.1| Ribosome-binding factor A [Staphylococcus aureus subsp. aureus
T0131]
gi|386728956|ref|YP_006195339.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
71193]
gi|387142878|ref|YP_005731271.1| putative ribosome-binding factor A [Staphylococcus aureus subsp.
aureus TW20]
gi|387602547|ref|YP_005734068.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
ST398]
gi|387780378|ref|YP_005755176.1| putative ribosome-binding factor A [Staphylococcus aureus subsp.
aureus LGA251]
gi|404478611|ref|YP_006710041.1| ribosome-binding factor A [Staphylococcus aureus 08BA02176]
gi|416839319|ref|ZP_11902713.1| ribosome-binding factor A [Staphylococcus aureus O11]
gi|416844704|ref|ZP_11905390.1| ribosome-binding factor A [Staphylococcus aureus O46]
gi|417649436|ref|ZP_12299235.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21189]
gi|417651347|ref|ZP_12301110.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21172]
gi|417653293|ref|ZP_12303027.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21193]
gi|417797279|ref|ZP_12444477.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21305]
gi|417802651|ref|ZP_12449708.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21318]
gi|417887052|ref|ZP_12531191.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21195]
gi|417891809|ref|ZP_12535866.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21200]
gi|417892135|ref|ZP_12536189.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21201]
gi|417896158|ref|ZP_12540125.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21235]
gi|417898447|ref|ZP_12542367.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21259]
gi|417901521|ref|ZP_12545397.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21266]
gi|417903423|ref|ZP_12547270.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21269]
gi|418284608|ref|ZP_12897325.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21209]
gi|418306722|ref|ZP_12918495.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21194]
gi|418309839|ref|ZP_12921390.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21331]
gi|418312505|ref|ZP_12924014.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21334]
gi|418317281|ref|ZP_12928705.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21340]
gi|418317745|ref|ZP_12929161.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21232]
gi|418322042|ref|ZP_12933381.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
VCU006]
gi|418559105|ref|ZP_13123651.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21252]
gi|418561435|ref|ZP_13125926.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21262]
gi|418566696|ref|ZP_13131069.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21264]
gi|418570830|ref|ZP_13135091.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21283]
gi|418597720|ref|ZP_13161242.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21342]
gi|418599595|ref|ZP_13163075.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21343]
gi|418603094|ref|ZP_13166485.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21345]
gi|418637919|ref|ZP_13200222.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
IS-3]
gi|418642852|ref|ZP_13205038.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
IS-24]
gi|418646062|ref|ZP_13208177.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
IS-55]
gi|418647518|ref|ZP_13209582.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
IS-88]
gi|418649675|ref|ZP_13211703.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
IS-91]
gi|418654634|ref|ZP_13216530.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
IS-99]
gi|418656568|ref|ZP_13218373.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
IS-105]
gi|418657921|ref|ZP_13219672.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
IS-111]
gi|418873547|ref|ZP_13427842.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
IS-125]
gi|418948146|ref|ZP_13500475.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
IS-157]
gi|418951022|ref|ZP_13503151.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
IS-160]
gi|418955413|ref|ZP_13507353.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
IS-189]
gi|418980023|ref|ZP_13527811.1| Ribosome-binding factor A [Staphylococcus aureus subsp. aureus
DR10]
gi|419774311|ref|ZP_14300281.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CO-23]
gi|421150220|ref|ZP_15609876.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus str.
Newbould 305]
gi|422742387|ref|ZP_16796393.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
MRSA177]
gi|422745498|ref|ZP_16799437.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
MRSA131]
gi|424768046|ref|ZP_18195339.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CM05]
gi|424785102|ref|ZP_18211905.1| Ribosome-binding factor A [Staphylococcus aureus CN79]
gi|440706032|ref|ZP_20886781.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21282]
gi|440734716|ref|ZP_20914328.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus DSM
20231]
gi|443636908|ref|ZP_21121001.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21236]
gi|443639759|ref|ZP_21123760.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21196]
gi|147740829|gb|ABQ49127.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus JH9]
gi|150374191|dbj|BAF67451.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus str.
Newman]
gi|253724299|gb|EES93028.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253728546|gb|EES97275.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
TCH130]
gi|257271781|gb|EEV03919.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
55/2053]
gi|257274826|gb|EEV06313.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
65-1322]
gi|257278746|gb|EEV09365.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
68-397]
gi|257281471|gb|EEV11608.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
E1410]
gi|257284502|gb|EEV14622.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
M876]
gi|257789646|gb|EEV27986.1| ribosome-binding factor A [Staphylococcus aureus A9781]
gi|257839225|gb|EEV63701.1| ribosome-binding factor A [Staphylococcus aureus A9763]
gi|257842346|gb|EEV66771.1| ribosome-binding factor A [Staphylococcus aureus A9719]
gi|257845918|gb|EEV69947.1| ribosome-binding factor A [Staphylococcus aureus A9635]
gi|257849177|gb|EEV73159.1| ribosome-binding factor A [Staphylococcus aureus A9299]
gi|257850101|gb|EEV74054.1| ribosome-binding factor A [Staphylococcus aureus A8115]
gi|257853750|gb|EEV76709.1| ribosome-binding factor A [Staphylococcus aureus A6300]
gi|257857389|gb|EEV80287.1| ribosome-binding factor A [Staphylococcus aureus A6224]
gi|257859787|gb|EEV82629.1| ribosome-binding factor A [Staphylococcus aureus A5948]
gi|257863163|gb|EEV85927.1| ribosome-binding factor A [Staphylococcus aureus A5937]
gi|269940761|emb|CBI49143.1| putative ribosome-binding factor A [Staphylococcus aureus subsp.
aureus TW20]
gi|282314064|gb|EFB44456.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
C101]
gi|282316779|gb|EFB47153.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
C427]
gi|282322115|gb|EFB52439.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
M899]
gi|282325447|gb|EFB55756.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282327625|gb|EFB57908.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282330880|gb|EFB60394.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282590615|gb|EFB95692.1| ribosome-binding factor A [Staphylococcus aureus A10102]
gi|282594176|gb|EFB99163.1| ribosome-binding factor A [Staphylococcus aureus A9765]
gi|282595443|gb|EFC00407.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
C160]
gi|282764755|gb|EFC04880.1| ribosome-binding factor A [Staphylococcus aureus A8117]
gi|283470485|emb|CAQ49696.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
ST398]
gi|283790162|gb|EFC28979.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
A017934/97]
gi|291096084|gb|EFE26345.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
58-424]
gi|291466985|gb|EFF09503.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
M809]
gi|296887327|gb|EFH26229.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|297576171|gb|EFH94887.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus MN8]
gi|300886411|gb|EFK81613.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
TCH70]
gi|302751093|gb|ADL65270.1| ribosome-binding factor A (P15B PROTEIN) [Staphylococcus aureus
subsp. aureus str. JKD6008]
gi|304340149|gb|EFM06090.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|312438350|gb|ADQ77421.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
TCH60]
gi|320140913|gb|EFW32760.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
MRSA131]
gi|320144371|gb|EFW36137.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
MRSA177]
gi|323441050|gb|EGA98757.1| ribosome-binding factor A [Staphylococcus aureus O11]
gi|323443919|gb|EGB01530.1| ribosome-binding factor A [Staphylococcus aureus O46]
gi|329313940|gb|AEB88353.1| Ribosome-binding factor A [Staphylococcus aureus subsp. aureus
T0131]
gi|329727531|gb|EGG63987.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21172]
gi|329727805|gb|EGG64256.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21189]
gi|329733675|gb|EGG70003.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21193]
gi|334267327|gb|EGL85791.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21305]
gi|334274287|gb|EGL92609.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21318]
gi|341841059|gb|EGS82531.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21235]
gi|341845360|gb|EGS86562.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21266]
gi|341848480|gb|EGS89643.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21259]
gi|341850044|gb|EGS91177.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21269]
gi|341851095|gb|EGS92024.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21200]
gi|341858102|gb|EGS98903.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21201]
gi|341858474|gb|EGS99264.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21195]
gi|344177480|emb|CCC87949.1| putative ribosome-binding factor A [Staphylococcus aureus subsp.
aureus LGA251]
gi|359830289|gb|AEV78267.1| Ribosome-binding factor A [Staphylococcus aureus subsp. aureus
M013]
gi|365173156|gb|EHM63743.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21209]
gi|365224657|gb|EHM65922.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
VCU006]
gi|365237962|gb|EHM78801.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21331]
gi|365238150|gb|EHM78987.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21334]
gi|365239653|gb|EHM80455.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21340]
gi|365245013|gb|EHM85665.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21232]
gi|365246379|gb|EHM86935.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21194]
gi|371969966|gb|EHO87404.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21264]
gi|371975396|gb|EHO92690.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21252]
gi|371977646|gb|EHO94910.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21262]
gi|371983010|gb|EHP00158.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21283]
gi|374393782|gb|EHQ65086.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21342]
gi|374393823|gb|EHQ65126.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21345]
gi|374396253|gb|EHQ67494.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21343]
gi|375014459|gb|EHS08140.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
IS-99]
gi|375015965|gb|EHS09609.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
IS-24]
gi|375021528|gb|EHS15024.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
IS-55]
gi|375023143|gb|EHS16606.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
IS-3]
gi|375029484|gb|EHS22811.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
IS-88]
gi|375030048|gb|EHS23373.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
IS-91]
gi|375033219|gb|EHS26423.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
IS-105]
gi|375039691|gb|EHS32610.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
IS-111]
gi|375366084|gb|EHS70096.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
IS-125]
gi|375370896|gb|EHS74688.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
IS-189]
gi|375373426|gb|EHS77099.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
IS-157]
gi|375374841|gb|EHS78460.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
IS-160]
gi|379992186|gb|EIA13643.1| Ribosome-binding factor A [Staphylococcus aureus subsp. aureus
DR10]
gi|383971837|gb|EID87899.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CO-23]
gi|384230249|gb|AFH69496.1| Ribosome-binding factor A [Staphylococcus aureus subsp. aureus
71193]
gi|394329610|gb|EJE55712.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus str.
Newbould 305]
gi|402348683|gb|EJU83662.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
CM05]
gi|404440100|gb|AFR73293.1| putative ribosome-binding factor A [Staphylococcus aureus
08BA02176]
gi|421956512|gb|EKU08841.1| Ribosome-binding factor A [Staphylococcus aureus CN79]
gi|436431744|gb|ELP29097.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus DSM
20231]
gi|436507563|gb|ELP43243.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21282]
gi|443406410|gb|ELS64990.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21196]
gi|443406885|gb|ELS65455.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
21236]
Length = 130
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 65/114 (57%), Gaps = 14/114 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + V +Q+++EL D ++ +KV + +G TI+DV ++ DL KV+
Sbjct: 19 RAERVGEQMKKELMD-IINNKV------KDPRVG-------FITITDVVLTNDLSQAKVF 64
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
++V G+D+ E L +++S+LG RM+LR+ PE+ + D+S E G+++
Sbjct: 65 LTVLGNDKEVENTFKALDKAKGFIKSELGSRMRLRIMPELMYEYDQSIEYGNKI 118
>gi|259503129|ref|ZP_05746031.1| ribosome-binding factor A [Lactobacillus antri DSM 16041]
gi|259168995|gb|EEW53490.1| ribosome-binding factor A [Lactobacillus antri DSM 16041]
Length = 119
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 63/122 (51%), Gaps = 15/122 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
RV +A+QIQRE+ D+LL V G TI+ V+V+ DLQ +Y
Sbjct: 7 RVDRLAQQIQREVDDILLK------RVRDPRVQGV--------TITGVDVTGDLQQATIY 52
Query: 129 VSVFGDDRGK-EVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
S+ D E AGL +RS+LG R+ + TPEI+F D+S GSR+ +++
Sbjct: 53 YSILSDKASDLEKVQAGLDKATGLIRSELGARLNIFKTPEIKFERDKSVAYGSRIDQLIN 112
Query: 188 RI 189
++
Sbjct: 113 QL 114
>gi|322418691|ref|YP_004197914.1| ribosome-binding factor A [Geobacter sp. M18]
gi|320125078|gb|ADW12638.1| ribosome-binding factor A [Geobacter sp. M18]
Length = 119
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 50/90 (55%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEI 168
TI+ V+++ DL+ VY +V G D K+ + AGL S ++R ++G+ +K+R PE+
Sbjct: 30 GFLTITGVKMTPDLRQATVYFTVHGSDEDKKASEAGLNSAKGFIRKEIGQALKMRFVPEV 89
Query: 169 RFIEDESFERGSRVIAILDRIKAEKEAAKS 198
F D S + G + +IL I A + S
Sbjct: 90 LFKYDTSLDYGQHIESILKEIGATDDGDNS 119
>gi|417885465|ref|ZP_12529619.1| ribosome-binding factor A [Lactobacillus oris F0423]
gi|341595387|gb|EGS38036.1| ribosome-binding factor A [Lactobacillus oris F0423]
Length = 119
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 64/122 (52%), Gaps = 15/122 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
RV +A+QIQRE+ D+LL V G TI+ V+V+ DLQ +Y
Sbjct: 7 RVDRLAQQIQREVDDILLK------RVRDPRVQGV--------TITGVDVTGDLQQATIY 52
Query: 129 VSVFGDDRGK-EVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
S+ D + E AGL +RS+LG R+ + TPEI+F D+S GSR+ +++
Sbjct: 53 YSILSDKASEMEKVQAGLDKATGLIRSELGARLNIFKTPEIKFERDKSVAYGSRIDRLIN 112
Query: 188 RI 189
++
Sbjct: 113 QL 114
>gi|182417577|ref|ZP_02948902.1| ribosome-binding factor A [Clostridium butyricum 5521]
gi|237668125|ref|ZP_04528109.1| ribosome-binding factor A [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182378590|gb|EDT76118.1| ribosome-binding factor A [Clostridium butyricum 5521]
gi|237656473|gb|EEP54029.1| ribosome-binding factor A [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 117
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 74/130 (56%), Gaps = 15/130 (11%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MAN R + + ++ +RE+S+++ + D L+++ +++DV+V+ DL+
Sbjct: 1 MANYRGGR-INEEFKREISNLIQNEI-------------KDPRLTAMISVTDVKVTKDLR 46
Query: 124 VVKVYVSVF-GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
KVYVS+F D+ K+ +A L+ + ++R +G+R+ LR TPEI D+S G +
Sbjct: 47 YAKVYVSIFCNDEEEKKSNLAALRGASGFIRKNVGQRINLRHTPEILIELDDSINYGMHM 106
Query: 183 IAILDRIKAE 192
++ +I ++
Sbjct: 107 DELIHKISSK 116
>gi|15803709|ref|NP_289743.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EDL933]
gi|15833302|ref|NP_312075.1| ribosome-binding factor A [Escherichia coli O157:H7 str. Sakai]
gi|16131059|ref|NP_417636.1| 30s ribosome binding factor [Escherichia coli str. K-12 substr.
MG1655]
gi|30064507|ref|NP_838678.1| ribosome-binding factor A [Shigella flexneri 2a str. 2457T]
gi|56480279|ref|NP_708968.2| ribosome-binding factor A [Shigella flexneri 2a str. 301]
gi|74313704|ref|YP_312123.1| ribosome-binding factor A [Shigella sonnei Ss046]
gi|82545593|ref|YP_409540.1| ribosome-binding factor A [Shigella boydii Sb227]
gi|82778481|ref|YP_404830.1| ribosome-binding factor A [Shigella dysenteriae Sd197]
gi|110643408|ref|YP_671138.1| ribosome-binding factor A [Escherichia coli 536]
gi|110807036|ref|YP_690556.1| ribosome-binding factor A [Shigella flexneri 5 str. 8401]
gi|117625463|ref|YP_858786.1| ribosome-binding factor A [Escherichia coli APEC O1]
gi|157154949|ref|YP_001464643.1| ribosome-binding factor A [Escherichia coli E24377A]
gi|157162652|ref|YP_001459970.1| ribosome-binding factor A [Escherichia coli HS]
gi|161486110|ref|NP_755790.2| ribosome-binding factor A [Escherichia coli CFT073]
gi|162138367|ref|YP_542574.2| ribosome-binding factor A [Escherichia coli UTI89]
gi|168749237|ref|ZP_02774259.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4113]
gi|168754148|ref|ZP_02779155.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4401]
gi|168762133|ref|ZP_02787140.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4501]
gi|168769585|ref|ZP_02794592.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4486]
gi|168773166|ref|ZP_02798173.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4196]
gi|168781310|ref|ZP_02806317.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4076]
gi|168786052|ref|ZP_02811059.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC869]
gi|168797768|ref|ZP_02822775.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC508]
gi|170018581|ref|YP_001723535.1| ribosome-binding factor A [Escherichia coli ATCC 8739]
gi|170082704|ref|YP_001732024.1| ribosome-binding factor A [Escherichia coli str. K-12 substr.
DH10B]
gi|170680547|ref|YP_001745441.1| ribosome-binding factor A [Escherichia coli SMS-3-5]
gi|187731087|ref|YP_001881916.1| ribosome-binding factor A [Shigella boydii CDC 3083-94]
gi|188492975|ref|ZP_03000245.1| ribosome-binding factor A [Escherichia coli 53638]
gi|191168041|ref|ZP_03029841.1| ribosome-binding factor A [Escherichia coli B7A]
gi|191172235|ref|ZP_03033778.1| ribosome-binding factor A [Escherichia coli F11]
gi|193062103|ref|ZP_03043199.1| ribosome-binding factor A [Escherichia coli E22]
gi|193067230|ref|ZP_03048198.1| ribosome-binding factor A [Escherichia coli E110019]
gi|194427732|ref|ZP_03060279.1| ribosome-binding factor A [Escherichia coli B171]
gi|194433785|ref|ZP_03066060.1| ribosome-binding factor A [Shigella dysenteriae 1012]
gi|194438794|ref|ZP_03070880.1| ribosome-binding factor A [Escherichia coli 101-1]
gi|195938387|ref|ZP_03083769.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4024]
gi|208807175|ref|ZP_03249512.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4206]
gi|208814431|ref|ZP_03255760.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4045]
gi|208819440|ref|ZP_03259760.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4042]
gi|209397218|ref|YP_002272638.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4115]
gi|209920644|ref|YP_002294728.1| ribosome-binding factor A [Escherichia coli SE11]
gi|217327738|ref|ZP_03443821.1| ribosome-binding factor A [Escherichia coli O157:H7 str. TW14588]
gi|218550452|ref|YP_002384243.1| ribosome-binding factor A [Escherichia fergusonii ATCC 35469]
gi|218555739|ref|YP_002388652.1| ribosome-binding factor A [Escherichia coli IAI1]
gi|218560239|ref|YP_002393152.1| ribosome-binding factor A [Escherichia coli S88]
gi|218691459|ref|YP_002399671.1| ribosome-binding factor A [Escherichia coli ED1a]
gi|218696874|ref|YP_002404541.1| ribosome-binding factor A [Escherichia coli 55989]
gi|218701938|ref|YP_002409567.1| ribosome-binding factor A [Escherichia coli IAI39]
gi|218706789|ref|YP_002414308.1| ribosome-binding factor A [Escherichia coli UMN026]
gi|222157881|ref|YP_002558020.1| ribosome-binding factor A [Escherichia coli LF82]
gi|227887890|ref|ZP_04005695.1| ribosome binding factor A [Escherichia coli 83972]
gi|238902271|ref|YP_002928067.1| ribosome-binding factor A [Escherichia coli BW2952]
gi|251786439|ref|YP_003000743.1| 30S ribosome binding factor [Escherichia coli BL21(DE3)]
gi|253771997|ref|YP_003034828.1| ribosome-binding factor A [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|254163111|ref|YP_003046219.1| ribosome-binding factor A [Escherichia coli B str. REL606]
gi|254289861|ref|YP_003055609.1| ribosome-binding factor A [Escherichia coli BL21(DE3)]
gi|254795118|ref|YP_003079955.1| ribosome-binding factor A [Escherichia coli O157:H7 str. TW14359]
gi|260845982|ref|YP_003223760.1| 30S ribosome binding factor RbfA [Escherichia coli O103:H2 str.
12009]
gi|260857296|ref|YP_003231187.1| ribosome-binding factor A [Escherichia coli O26:H11 str. 11368]
gi|260869919|ref|YP_003236321.1| 30S ribosome binding factor RbfA [Escherichia coli O111:H- str.
11128]
gi|261228179|ref|ZP_05942460.1| 30s ribosome binding factor [Escherichia coli O157:H7 str.
FRIK2000]
gi|261255035|ref|ZP_05947568.1| 30S ribosome binding factor RbfA [Escherichia coli O157:H7 str.
FRIK966]
gi|291284543|ref|YP_003501361.1| ribosome-binding factor A [Escherichia coli O55:H7 str. CB9615]
gi|293406779|ref|ZP_06650705.1| ribosome-binding factor A [Escherichia coli FVEC1412]
gi|293449503|ref|ZP_06663924.1| ribosome-binding factor A [Escherichia coli B088]
gi|298382519|ref|ZP_06992116.1| ribosome-binding factor A [Escherichia coli FVEC1302]
gi|300817581|ref|ZP_07097797.1| ribosome-binding factor A [Escherichia coli MS 107-1]
gi|300823870|ref|ZP_07103994.1| ribosome-binding factor A [Escherichia coli MS 119-7]
gi|300904353|ref|ZP_07122206.1| ribosome-binding factor A [Escherichia coli MS 84-1]
gi|300918922|ref|ZP_07135481.1| ribosome-binding factor A [Escherichia coli MS 115-1]
gi|300926094|ref|ZP_07141912.1| ribosome-binding factor A [Escherichia coli MS 182-1]
gi|300929857|ref|ZP_07145303.1| ribosome-binding factor A [Escherichia coli MS 187-1]
gi|300938077|ref|ZP_07152855.1| ribosome-binding factor A [Escherichia coli MS 21-1]
gi|300948817|ref|ZP_07162885.1| ribosome-binding factor A [Escherichia coli MS 116-1]
gi|300955753|ref|ZP_07168098.1| ribosome-binding factor A [Escherichia coli MS 175-1]
gi|300977834|ref|ZP_07174074.1| ribosome-binding factor A [Escherichia coli MS 200-1]
gi|300990767|ref|ZP_07179339.1| ribosome-binding factor A [Escherichia coli MS 45-1]
gi|301025988|ref|ZP_07189470.1| ribosome-binding factor A [Escherichia coli MS 196-1]
gi|301047990|ref|ZP_07195032.1| ribosome-binding factor A [Escherichia coli MS 185-1]
gi|301301777|ref|ZP_07207911.1| ribosome-binding factor A [Escherichia coli MS 124-1]
gi|301326410|ref|ZP_07219764.1| ribosome-binding factor A [Escherichia coli MS 78-1]
gi|301644878|ref|ZP_07244850.1| ribosome-binding factor A [Escherichia coli MS 146-1]
gi|306816489|ref|ZP_07450621.1| ribosome-binding factor A [Escherichia coli NC101]
gi|307313126|ref|ZP_07592752.1| ribosome-binding factor A [Escherichia coli W]
gi|309785494|ref|ZP_07680125.1| ribosome-binding factor A [Shigella dysenteriae 1617]
gi|309793745|ref|ZP_07688171.1| ribosome-binding factor A [Escherichia coli MS 145-7]
gi|312972561|ref|ZP_07786734.1| ribosome-binding factor A [Escherichia coli 1827-70]
gi|331643867|ref|ZP_08344998.1| ribosome-binding factor A [Escherichia coli H736]
gi|331654773|ref|ZP_08355773.1| ribosome-binding factor A [Escherichia coli M718]
gi|331659456|ref|ZP_08360398.1| ribosome-binding factor A [Escherichia coli TA206]
gi|331664781|ref|ZP_08365686.1| ribosome-binding factor A [Escherichia coli TA143]
gi|331669996|ref|ZP_08370841.1| ribosome-binding factor A [Escherichia coli TA271]
gi|331674705|ref|ZP_08375464.1| ribosome-binding factor A [Escherichia coli TA280]
gi|331679248|ref|ZP_08379920.1| ribosome-binding factor A [Escherichia coli H591]
gi|331684816|ref|ZP_08385408.1| ribosome-binding factor A [Escherichia coli H299]
gi|366160418|ref|ZP_09460280.1| ribosome-binding factor A [Escherichia sp. TW09308]
gi|378711376|ref|YP_005276269.1| ribosome-binding factor A [Escherichia coli KO11FL]
gi|383180347|ref|YP_005458352.1| ribosome-binding factor A [Shigella sonnei 53G]
gi|384544764|ref|YP_005728828.1| Ribosome-binding factor A [Shigella flexneri 2002017]
gi|386282275|ref|ZP_10059928.1| ribosome-binding factor A [Escherichia sp. 4_1_40B]
gi|386594115|ref|YP_006090515.1| ribosome-binding factor A [Escherichia coli DH1]
gi|386601195|ref|YP_006102701.1| ribosome-binding factor A [Escherichia coli IHE3034]
gi|386602748|ref|YP_006109048.1| ribosome-binding factor A [Escherichia coli UM146]
gi|386610558|ref|YP_006126044.1| 30S ribosome binding factor [Escherichia coli W]
gi|386615955|ref|YP_006135621.1| ribosome-binding factor RbfA [Escherichia coli UMNK88]
gi|386620782|ref|YP_006140362.1| Ribosome-binding factor A [Escherichia coli NA114]
gi|386625975|ref|YP_006145703.1| 30S ribosome binding factor [Escherichia coli O7:K1 str. CE10]
gi|386631049|ref|YP_006150769.1| ribosome-binding factor A [Escherichia coli str. 'clone D i2']
gi|386635969|ref|YP_006155688.1| ribosome-binding factor A [Escherichia coli str. 'clone D i14']
gi|386640771|ref|YP_006107569.1| ribosome-binding factor A [Escherichia coli ABU 83972]
gi|386699863|ref|YP_006163700.1| ribosome-binding factor A [Escherichia coli KO11FL]
gi|386706434|ref|YP_006170281.1| Ribosome-binding factor A [Escherichia coli P12b]
gi|386711076|ref|YP_006174797.1| ribosome-binding factor A [Escherichia coli W]
gi|387508572|ref|YP_006160828.1| ribosome-binding factor A [Escherichia coli O55:H7 str. RM12579]
gi|387613859|ref|YP_006116975.1| ribosome-binding factor A [Escherichia coli ETEC H10407]
gi|387618465|ref|YP_006121487.1| ribosome-binding factor A [Escherichia coli O83:H1 str. NRG 857C]
gi|387622831|ref|YP_006130459.1| ribosome-binding factor A [Escherichia coli DH1]
gi|387831054|ref|YP_003350991.1| ribosome-binding factor A [Escherichia coli SE15]
gi|387884353|ref|YP_006314655.1| ribosome-binding factor A [Escherichia coli Xuzhou21]
gi|388479162|ref|YP_491354.1| 30s ribosome binding factor [Escherichia coli str. K-12 substr.
W3110]
gi|404376548|ref|ZP_10981706.1| ribosome-binding factor A [Escherichia sp. 1_1_43]
gi|407471143|ref|YP_006782414.1| ribosome-binding factor A [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407480200|ref|YP_006777349.1| ribosome-binding factor A [Escherichia coli O104:H4 str.
2011C-3493]
gi|410480761|ref|YP_006768307.1| ribosome-binding factor A [Escherichia coli O104:H4 str.
2009EL-2050]
gi|414577955|ref|ZP_11435129.1| ribosome-binding factor A [Shigella sonnei 3233-85]
gi|415776332|ref|ZP_11487916.1| ribosome-binding factor A [Escherichia coli 3431]
gi|415787447|ref|ZP_11494075.1| ribosome-binding factor A [Escherichia coli EPECa14]
gi|415795646|ref|ZP_11497159.1| ribosome-binding factor A [Escherichia coli E128010]
gi|415811198|ref|ZP_11503548.1| ribosome-binding factor A [Escherichia coli LT-68]
gi|415820755|ref|ZP_11509862.1| ribosome-binding factor A [Escherichia coli OK1180]
gi|415830691|ref|ZP_11516559.1| ribosome-binding factor A [Escherichia coli OK1357]
gi|415839223|ref|ZP_11521041.1| ribosome-binding factor A [Escherichia coli RN587/1]
gi|415851006|ref|ZP_11527801.1| ribosome-binding factor A [Shigella sonnei 53G]
gi|415857263|ref|ZP_11532037.1| ribosome-binding factor A [Shigella flexneri 2a str. 2457T]
gi|415861793|ref|ZP_11535403.1| ribosome-binding factor A [Escherichia coli MS 85-1]
gi|415875688|ref|ZP_11542367.1| ribosome-binding factor A [Escherichia coli MS 79-10]
gi|416266921|ref|ZP_11641759.1| Ribosome-binding factor A [Shigella dysenteriae CDC 74-1112]
gi|416281383|ref|ZP_11645779.1| Ribosome-binding factor A [Shigella boydii ATCC 9905]
gi|416294215|ref|ZP_11650714.1| Ribosome-binding factor A [Shigella flexneri CDC 796-83]
gi|416308478|ref|ZP_11655154.1| Ribosome-binding factor A [Escherichia coli O157:H7 str. 1044]
gi|416322341|ref|ZP_11664189.1| Ribosome-binding factor A [Escherichia coli O157:H7 str. EC1212]
gi|416332578|ref|ZP_11670489.1| Ribosome-binding factor A [Escherichia coli O157:H7 str. 1125]
gi|416337227|ref|ZP_11673653.1| Ribosome-binding factor A [Escherichia coli WV_060327]
gi|416341092|ref|ZP_11675813.1| Ribosome-binding factor A [Escherichia coli EC4100B]
gi|416777667|ref|ZP_11875318.1| ribosome-binding factor A [Escherichia coli O157:H7 str. G5101]
gi|416789061|ref|ZP_11880243.1| ribosome-binding factor A [Escherichia coli O157:H- str. 493-89]
gi|416800970|ref|ZP_11885148.1| ribosome-binding factor A [Escherichia coli O157:H- str. H 2687]
gi|416811602|ref|ZP_11889959.1| ribosome-binding factor A [Escherichia coli O55:H7 str. 3256-97]
gi|416822110|ref|ZP_11894617.1| ribosome-binding factor A [Escherichia coli O55:H7 str. USDA 5905]
gi|416832502|ref|ZP_11899713.1| ribosome-binding factor A [Escherichia coli O157:H7 str. LSU-61]
gi|416899488|ref|ZP_11928970.1| ribosome-binding factor A [Escherichia coli STEC_7v]
gi|417086869|ref|ZP_11953966.1| ribosome-binding factor A [Escherichia coli cloneA_i1]
gi|417116713|ref|ZP_11967574.1| ribosome-binding factor A [Escherichia coli 1.2741]
gi|417123231|ref|ZP_11972141.1| ribosome-binding factor A [Escherichia coli 97.0246]
gi|417132404|ref|ZP_11977189.1| ribosome-binding factor A [Escherichia coli 5.0588]
gi|417138720|ref|ZP_11982371.1| ribosome-binding factor A [Escherichia coli 97.0259]
gi|417146718|ref|ZP_11987565.1| ribosome-binding factor A [Escherichia coli 1.2264]
gi|417157501|ref|ZP_11995125.1| ribosome-binding factor A [Escherichia coli 96.0497]
gi|417162901|ref|ZP_11998231.1| ribosome-binding factor A [Escherichia coli 99.0741]
gi|417175074|ref|ZP_12004870.1| ribosome-binding factor A [Escherichia coli 3.2608]
gi|417184175|ref|ZP_12009867.1| ribosome-binding factor A [Escherichia coli 93.0624]
gi|417197579|ref|ZP_12016513.1| ribosome-binding factor A [Escherichia coli 4.0522]
gi|417210917|ref|ZP_12021334.1| ribosome-binding factor A [Escherichia coli JB1-95]
gi|417221213|ref|ZP_12024653.1| ribosome-binding factor A [Escherichia coli 96.154]
gi|417229006|ref|ZP_12030764.1| ribosome-binding factor A [Escherichia coli 5.0959]
gi|417245132|ref|ZP_12038871.1| ribosome-binding factor A [Escherichia coli 9.0111]
gi|417249190|ref|ZP_12040974.1| ribosome-binding factor A [Escherichia coli 4.0967]
gi|417264093|ref|ZP_12051487.1| ribosome-binding factor A [Escherichia coli 2.3916]
gi|417267260|ref|ZP_12054621.1| ribosome-binding factor A [Escherichia coli 3.3884]
gi|417271377|ref|ZP_12058726.1| ribosome-binding factor A [Escherichia coli 2.4168]
gi|417276218|ref|ZP_12063549.1| ribosome-binding factor A [Escherichia coli 3.2303]
gi|417282231|ref|ZP_12069531.1| ribosome-binding factor A [Escherichia coli 3003]
gi|417286144|ref|ZP_12073435.1| ribosome-binding factor A [Escherichia coli TW07793]
gi|417291542|ref|ZP_12078823.1| ribosome-binding factor A [Escherichia coli B41]
gi|417296034|ref|ZP_12083281.1| ribosome-binding factor A [Escherichia coli 900105 (10e)]
gi|417309699|ref|ZP_12096529.1| Ribosome-binding factor A [Escherichia coli PCN033]
gi|417582785|ref|ZP_12233586.1| ribosome-binding factor A [Escherichia coli STEC_B2F1]
gi|417588281|ref|ZP_12239045.1| ribosome-binding factor A [Escherichia coli STEC_C165-02]
gi|417593569|ref|ZP_12244260.1| ribosome-binding factor A [Escherichia coli 2534-86]
gi|417598577|ref|ZP_12249205.1| ribosome-binding factor A [Escherichia coli 3030-1]
gi|417604052|ref|ZP_12254617.1| ribosome-binding factor A [Escherichia coli STEC_94C]
gi|417609858|ref|ZP_12260356.1| ribosome-binding factor A [Escherichia coli STEC_DG131-3]
gi|417614773|ref|ZP_12265228.1| ribosome-binding factor A [Escherichia coli STEC_EH250]
gi|417619770|ref|ZP_12270178.1| ribosome-binding factor A [Escherichia coli G58-1]
gi|417625253|ref|ZP_12275546.1| ribosome-binding factor A [Escherichia coli STEC_H.1.8]
gi|417630623|ref|ZP_12280858.1| ribosome-binding factor A [Escherichia coli STEC_MHI813]
gi|417636262|ref|ZP_12286472.1| ribosome-binding factor A [Escherichia coli STEC_S1191]
gi|417641071|ref|ZP_12291206.1| ribosome-binding factor A [Escherichia coli TX1999]
gi|417668656|ref|ZP_12318197.1| ribosome-binding factor A [Escherichia coli STEC_O31]
gi|417674084|ref|ZP_12323521.1| ribosome-binding factor A [Shigella dysenteriae 155-74]
gi|417683954|ref|ZP_12333296.1| ribosome-binding factor A [Shigella boydii 3594-74]
gi|417691541|ref|ZP_12340751.1| ribosome-binding factor A [Shigella boydii 5216-82]
gi|417703656|ref|ZP_12352760.1| ribosome-binding factor A [Shigella flexneri K-218]
gi|417709258|ref|ZP_12358283.1| ribosome-binding factor A [Shigella flexneri VA-6]
gi|417724867|ref|ZP_12373663.1| ribosome-binding factor A [Shigella flexneri K-304]
gi|417730129|ref|ZP_12378820.1| ribosome-binding factor A [Shigella flexneri K-671]
gi|417735159|ref|ZP_12383806.1| ribosome-binding factor A [Shigella flexneri 2747-71]
gi|417740038|ref|ZP_12388610.1| ribosome-binding factor A [Shigella flexneri 4343-70]
gi|417745082|ref|ZP_12393603.1| ribosome-binding factor A [Shigella flexneri 2930-71]
gi|417806816|ref|ZP_12453748.1| ribosome-binding factor A [Escherichia coli O104:H4 str. LB226692]
gi|417829646|ref|ZP_12476191.1| ribosome-binding factor A [Shigella flexneri J1713]
gi|417834562|ref|ZP_12481004.1| ribosome-binding factor A [Escherichia coli O104:H4 str. 01-09591]
gi|417865984|ref|ZP_12511027.1| hypothetical protein C22711_2915 [Escherichia coli O104:H4 str.
C227-11]
gi|417945994|ref|ZP_12589220.1| ribosome-binding factor A [Escherichia coli XH140A]
gi|417977268|ref|ZP_12618054.1| ribosome-binding factor A [Escherichia coli XH001]
gi|418040933|ref|ZP_12679165.1| ribosome-binding factor A [Escherichia coli W26]
gi|418258676|ref|ZP_12881872.1| ribosome-binding factor A [Shigella flexneri 6603-63]
gi|418268642|ref|ZP_12887311.1| ribosome-binding factor A [Shigella sonnei str. Moseley]
gi|418304801|ref|ZP_12916595.1| ribosome-binding factor A [Escherichia coli UMNF18]
gi|418941587|ref|ZP_13494909.1| ribosome-binding factor A [Escherichia coli O157:H43 str. T22]
gi|418956448|ref|ZP_13508373.1| ribosome-binding factor A [Escherichia coli J53]
gi|419047160|ref|ZP_13594094.1| ribosome-binding factor A [Escherichia coli DEC3A]
gi|419052945|ref|ZP_13599812.1| ribosome-binding factor A [Escherichia coli DEC3B]
gi|419058942|ref|ZP_13605744.1| ribosome-binding factor A [Escherichia coli DEC3C]
gi|419064440|ref|ZP_13611162.1| ribosome-binding factor A [Escherichia coli DEC3D]
gi|419071389|ref|ZP_13617002.1| ribosome-binding factor A [Escherichia coli DEC3E]
gi|419077006|ref|ZP_13622509.1| ribosome-binding factor A [Escherichia coli DEC3F]
gi|419082418|ref|ZP_13627864.1| ribosome-binding factor A [Escherichia coli DEC4A]
gi|419088246|ref|ZP_13633598.1| ribosome-binding factor A [Escherichia coli DEC4B]
gi|419094262|ref|ZP_13639542.1| ribosome-binding factor A [Escherichia coli DEC4C]
gi|419100121|ref|ZP_13645313.1| ribosome-binding factor A [Escherichia coli DEC4D]
gi|419105792|ref|ZP_13650917.1| ribosome-binding factor A [Escherichia coli DEC4E]
gi|419111217|ref|ZP_13656269.1| ribosome-binding factor A [Escherichia coli DEC4F]
gi|419116715|ref|ZP_13661727.1| ribosome-binding factor A [Escherichia coli DEC5A]
gi|419122431|ref|ZP_13667374.1| ribosome-binding factor A [Escherichia coli DEC5B]
gi|419127849|ref|ZP_13672724.1| ribosome-binding factor A [Escherichia coli DEC5C]
gi|419133279|ref|ZP_13678107.1| ribosome-binding factor A [Escherichia coli DEC5D]
gi|419138435|ref|ZP_13683226.1| ribosome-binding factor A [Escherichia coli DEC5E]
gi|419144243|ref|ZP_13688975.1| ribosome-binding factor A [Escherichia coli DEC6A]
gi|419150096|ref|ZP_13694745.1| ribosome-binding factor A [Escherichia coli DEC6B]
gi|419155636|ref|ZP_13700193.1| ribosome-binding factor A [Escherichia coli DEC6C]
gi|419172010|ref|ZP_13715891.1| ribosome-binding factor A [Escherichia coli DEC7A]
gi|419176472|ref|ZP_13720284.1| ribosome-binding factor A [Escherichia coli DEC7B]
gi|419182573|ref|ZP_13726183.1| ribosome-binding factor A [Escherichia coli DEC7C]
gi|419188192|ref|ZP_13731699.1| ribosome-binding factor A [Escherichia coli DEC7D]
gi|419193318|ref|ZP_13736765.1| ribosome-binding factor A [Escherichia coli DEC7E]
gi|419198871|ref|ZP_13742166.1| ribosome-binding factor A [Escherichia coli DEC8A]
gi|419205043|ref|ZP_13748216.1| ribosome-binding factor A [Escherichia coli DEC8B]
gi|419211622|ref|ZP_13754691.1| ribosome-binding factor A [Escherichia coli DEC8C]
gi|419217561|ref|ZP_13760557.1| ribosome-binding factor A [Escherichia coli DEC8D]
gi|419223315|ref|ZP_13766229.1| ribosome-binding factor A [Escherichia coli DEC8E]
gi|419228766|ref|ZP_13771609.1| ribosome-binding factor A [Escherichia coli DEC9A]
gi|419234266|ref|ZP_13777035.1| ribosome-binding factor A [Escherichia coli DEC9B]
gi|419239738|ref|ZP_13782446.1| ribosome-binding factor A [Escherichia coli DEC9C]
gi|419245235|ref|ZP_13787869.1| ribosome-binding factor A [Escherichia coli DEC9D]
gi|419251095|ref|ZP_13793664.1| ribosome-binding factor A [Escherichia coli DEC9E]
gi|419256773|ref|ZP_13799276.1| ribosome-binding factor A [Escherichia coli DEC10A]
gi|419263074|ref|ZP_13805482.1| ribosome-binding factor A [Escherichia coli DEC10B]
gi|419268955|ref|ZP_13811299.1| ribosome-binding factor A [Escherichia coli DEC10C]
gi|419274527|ref|ZP_13816817.1| ribosome-binding factor A [Escherichia coli DEC10D]
gi|419279814|ref|ZP_13822057.1| ribosome-binding factor A [Escherichia coli DEC10E]
gi|419286080|ref|ZP_13828244.1| ribosome-binding factor A [Escherichia coli DEC10F]
gi|419291368|ref|ZP_13833454.1| ribosome-binding factor A [Escherichia coli DEC11A]
gi|419296654|ref|ZP_13838693.1| ribosome-binding factor A [Escherichia coli DEC11B]
gi|419302171|ref|ZP_13844164.1| ribosome-binding factor A [Escherichia coli DEC11C]
gi|419308154|ref|ZP_13850049.1| ribosome-binding factor A [Escherichia coli DEC11D]
gi|419313190|ref|ZP_13855049.1| ribosome-binding factor A [Escherichia coli DEC11E]
gi|419318619|ref|ZP_13860418.1| ribosome-binding factor A [Escherichia coli DEC12A]
gi|419324887|ref|ZP_13866575.1| ribosome-binding factor A [Escherichia coli DEC12B]
gi|419330823|ref|ZP_13872421.1| ribosome-binding factor A [Escherichia coli DEC12C]
gi|419336313|ref|ZP_13877831.1| ribosome-binding factor A [Escherichia coli DEC12D]
gi|419341726|ref|ZP_13883182.1| ribosome-binding factor A [Escherichia coli DEC12E]
gi|419346919|ref|ZP_13888290.1| ribosome-binding factor A [Escherichia coli DEC13A]
gi|419351386|ref|ZP_13892717.1| ribosome-binding factor A [Escherichia coli DEC13B]
gi|419356859|ref|ZP_13898107.1| ribosome-binding factor A [Escherichia coli DEC13C]
gi|419361839|ref|ZP_13903050.1| ribosome-binding factor A [Escherichia coli DEC13D]
gi|419367000|ref|ZP_13908152.1| ribosome-binding factor A [Escherichia coli DEC13E]
gi|419371745|ref|ZP_13912855.1| ribosome-binding factor A [Escherichia coli DEC14A]
gi|419377240|ref|ZP_13918260.1| ribosome-binding factor A [Escherichia coli DEC14B]
gi|419382577|ref|ZP_13923521.1| ribosome-binding factor A [Escherichia coli DEC14C]
gi|419387867|ref|ZP_13928737.1| ribosome-binding factor A [Escherichia coli DEC14D]
gi|419393325|ref|ZP_13934127.1| ribosome-binding factor A [Escherichia coli DEC15A]
gi|419398427|ref|ZP_13939190.1| ribosome-binding factor A [Escherichia coli DEC15B]
gi|419403709|ref|ZP_13944429.1| ribosome-binding factor A [Escherichia coli DEC15C]
gi|419408867|ref|ZP_13949553.1| ribosome-binding factor A [Escherichia coli DEC15D]
gi|419414415|ref|ZP_13955053.1| ribosome-binding factor A [Escherichia coli DEC15E]
gi|419702001|ref|ZP_14229599.1| ribosome-binding factor A [Escherichia coli SCI-07]
gi|419805321|ref|ZP_14330460.1| ribosome-binding factor A [Escherichia coli AI27]
gi|419810589|ref|ZP_14335469.1| ribosome-binding factor A [Escherichia coli O32:H37 str. P4]
gi|419866817|ref|ZP_14389166.1| ribosome-binding factor A [Escherichia coli O103:H25 str. CVM9340]
gi|419868270|ref|ZP_14390562.1| ribosome-binding factor A [Escherichia coli O103:H2 str. CVM9450]
gi|419877668|ref|ZP_14399216.1| ribosome-binding factor A [Escherichia coli O111:H11 str. CVM9534]
gi|419884134|ref|ZP_14405122.1| ribosome-binding factor A [Escherichia coli O111:H11 str. CVM9545]
gi|419892523|ref|ZP_14412542.1| ribosome-binding factor A [Escherichia coli O111:H8 str. CVM9570]
gi|419894281|ref|ZP_14414199.1| ribosome-binding factor A [Escherichia coli O111:H8 str. CVM9574]
gi|419903924|ref|ZP_14422937.1| ribosome-binding factor A [Escherichia coli O26:H11 str. CVM9942]
gi|419909649|ref|ZP_14428188.1| ribosome-binding factor A [Escherichia coli O26:H11 str. CVM10026]
gi|419913501|ref|ZP_14431932.1| ribosome-binding factor A [Escherichia coli KD1]
gi|419919645|ref|ZP_14437789.1| ribosome-binding factor A [Escherichia coli KD2]
gi|419922589|ref|ZP_14440601.1| ribosome-binding factor A [Escherichia coli 541-15]
gi|419927607|ref|ZP_14445341.1| ribosome-binding factor A [Escherichia coli 541-1]
gi|419935094|ref|ZP_14452181.1| ribosome-binding factor A [Escherichia coli 576-1]
gi|419939340|ref|ZP_14456135.1| ribosome-binding factor A [Escherichia coli 75]
gi|419946185|ref|ZP_14462602.1| ribosome-binding factor A [Escherichia coli HM605]
gi|419947957|ref|ZP_14464265.1| ribosome-binding factor A [Escherichia coli CUMT8]
gi|420088967|ref|ZP_14600815.1| ribosome-binding factor A [Escherichia coli O111:H8 str. CVM9602]
gi|420094604|ref|ZP_14606183.1| ribosome-binding factor A [Escherichia coli O111:H8 str. CVM9634]
gi|420098952|ref|ZP_14610199.1| ribosome-binding factor A [Escherichia coli O111:H11 str. CVM9455]
gi|420105861|ref|ZP_14616294.1| ribosome-binding factor A [Escherichia coli O111:H11 str. CVM9553]
gi|420118194|ref|ZP_14627527.1| ribosome-binding factor A [Escherichia coli O26:H11 str. CVM10021]
gi|420118595|ref|ZP_14627916.1| ribosome-binding factor A [Escherichia coli O26:H11 str. CVM10030]
gi|420130134|ref|ZP_14638638.1| ribosome-binding factor A [Escherichia coli O26:H11 str. CVM10224]
gi|420135145|ref|ZP_14643239.1| ribosome-binding factor A [Escherichia coli O26:H11 str. CVM9952]
gi|420271418|ref|ZP_14773771.1| ribosome-binding factor A [Escherichia coli PA22]
gi|420277213|ref|ZP_14779494.1| ribosome-binding factor A [Escherichia coli PA40]
gi|420282485|ref|ZP_14784718.1| ribosome-binding factor A [Escherichia coli TW06591]
gi|420288679|ref|ZP_14790863.1| ribosome-binding factor A [Escherichia coli TW10246]
gi|420294287|ref|ZP_14796401.1| ribosome-binding factor A [Escherichia coli TW11039]
gi|420300140|ref|ZP_14802185.1| ribosome-binding factor A [Escherichia coli TW09109]
gi|420305924|ref|ZP_14807913.1| ribosome-binding factor A [Escherichia coli TW10119]
gi|420311379|ref|ZP_14813308.1| ribosome-binding factor A [Escherichia coli EC1738]
gi|420316878|ref|ZP_14818751.1| ribosome-binding factor A [Escherichia coli EC1734]
gi|420322136|ref|ZP_14823960.1| ribosome-binding factor A [Shigella flexneri 2850-71]
gi|420327328|ref|ZP_14829073.1| ribosome-binding factor A [Shigella flexneri CCH060]
gi|420333122|ref|ZP_14834767.1| ribosome-binding factor A [Shigella flexneri K-1770]
gi|420337501|ref|ZP_14839063.1| ribosome-binding factor A [Shigella flexneri K-315]
gi|420343570|ref|ZP_14845035.1| ribosome-binding factor A [Shigella flexneri K-404]
gi|420349123|ref|ZP_14850504.1| ribosome-binding factor A [Shigella boydii 965-58]
gi|420354712|ref|ZP_14855793.1| ribosome-binding factor A [Shigella boydii 4444-74]
gi|420360522|ref|ZP_14861477.1| ribosome-binding factor A [Shigella sonnei 3226-85]
gi|420365002|ref|ZP_14865871.1| ribosome-binding factor A [Shigella sonnei 4822-66]
gi|420375630|ref|ZP_14875479.1| ribosome-binding factor A [Shigella flexneri 1235-66]
gi|420382243|ref|ZP_14881681.1| ribosome-binding factor A [Shigella dysenteriae 225-75]
gi|420387422|ref|ZP_14886763.1| ribosome-binding factor A [Escherichia coli EPECa12]
gi|420393286|ref|ZP_14892532.1| ribosome-binding factor A [Escherichia coli EPEC C342-62]
gi|421684330|ref|ZP_16124118.1| ribosome-binding factor A [Shigella flexneri 1485-80]
gi|421774863|ref|ZP_16211474.1| ribosome-binding factor A [Escherichia coli AD30]
gi|421814205|ref|ZP_16249912.1| ribosome-binding factor A [Escherichia coli 8.0416]
gi|421820001|ref|ZP_16255488.1| ribosome-binding factor A [Escherichia coli 10.0821]
gi|421826013|ref|ZP_16261367.1| ribosome-binding factor A [Escherichia coli FRIK920]
gi|421832729|ref|ZP_16268011.1| ribosome-binding factor A [Escherichia coli PA7]
gi|422332644|ref|ZP_16413657.1| ribosome-binding factor A [Escherichia coli 4_1_47FAA]
gi|422353703|ref|ZP_16434452.1| ribosome-binding factor A [Escherichia coli MS 117-3]
gi|422357248|ref|ZP_16437915.1| ribosome-binding factor A [Escherichia coli MS 110-3]
gi|422362341|ref|ZP_16442912.1| ribosome-binding factor A [Escherichia coli MS 153-1]
gi|422370370|ref|ZP_16450763.1| ribosome-binding factor A [Escherichia coli MS 16-3]
gi|422376584|ref|ZP_16456833.1| ribosome-binding factor A [Escherichia coli MS 60-1]
gi|422380004|ref|ZP_16460185.1| ribosome-binding factor A [Escherichia coli MS 57-2]
gi|422749730|ref|ZP_16803641.1| ribosome-binding proteinA [Escherichia coli H252]
gi|422753889|ref|ZP_16807715.1| ribosome-binding proteinA [Escherichia coli H263]
gi|422767336|ref|ZP_16821062.1| ribosome-binding protein A [Escherichia coli E1520]
gi|422770954|ref|ZP_16824644.1| ribosome-binding proteinA [Escherichia coli E482]
gi|422775577|ref|ZP_16829232.1| ribosome-binding protein A [Escherichia coli H120]
gi|422779870|ref|ZP_16832655.1| ribosome-binding proteinA [Escherichia coli TW10509]
gi|422787299|ref|ZP_16840037.1| ribosome-binding proteinA [Escherichia coli H489]
gi|422793204|ref|ZP_16845901.1| ribosome-binding proteinA [Escherichia coli TA007]
gi|422801115|ref|ZP_16849612.1| ribosome-binding proteinA [Escherichia coli M863]
gi|422803967|ref|ZP_16852399.1| ribosome-binding proteinA [Escherichia fergusonii B253]
gi|422818336|ref|ZP_16866549.1| ribosome-binding factor A [Escherichia coli M919]
gi|422827427|ref|ZP_16875601.1| ribosome-binding factor A [Escherichia coli B093]
gi|422833481|ref|ZP_16881547.1| ribosome-binding factor A [Escherichia coli E101]
gi|422841185|ref|ZP_16889155.1| ribosome-binding factor A [Escherichia coli H397]
gi|422959942|ref|ZP_16971577.1| ribosome-binding factor A [Escherichia coli H494]
gi|422969668|ref|ZP_16973461.1| ribosome-binding factor A [Escherichia coli TA124]
gi|422989372|ref|ZP_16980144.1| ribosome-binding factor A [Escherichia coli O104:H4 str. C227-11]
gi|422996267|ref|ZP_16987030.1| ribosome-binding factor A [Escherichia coli O104:H4 str. C236-11]
gi|423001416|ref|ZP_16992169.1| ribosome-binding factor A [Escherichia coli O104:H4 str. 09-7901]
gi|423005076|ref|ZP_16995821.1| ribosome-binding factor A [Escherichia coli O104:H4 str. 04-8351]
gi|423011581|ref|ZP_17002314.1| ribosome-binding factor A [Escherichia coli O104:H4 str. 11-3677]
gi|423020809|ref|ZP_17011516.1| ribosome-binding factor A [Escherichia coli O104:H4 str. 11-4404]
gi|423025974|ref|ZP_17016669.1| ribosome-binding factor A [Escherichia coli O104:H4 str. 11-4522]
gi|423031793|ref|ZP_17022479.1| ribosome-binding factor A [Escherichia coli O104:H4 str. 11-4623]
gi|423034665|ref|ZP_17025343.1| ribosome-binding factor A [Escherichia coli O104:H4 str. 11-4632
C1]
gi|423039793|ref|ZP_17030462.1| ribosome-binding factor A [Escherichia coli O104:H4 str. 11-4632
C2]
gi|423046477|ref|ZP_17037136.1| ribosome-binding factor A [Escherichia coli O104:H4 str. 11-4632
C3]
gi|423055014|ref|ZP_17043820.1| ribosome-binding factor A [Escherichia coli O104:H4 str. 11-4632
C4]
gi|423057006|ref|ZP_17045805.1| ribosome-binding factor A [Escherichia coli O104:H4 str. 11-4632
C5]
gi|423702671|ref|ZP_17677103.1| ribosome-binding factor A [Escherichia coli H730]
gi|423707468|ref|ZP_17681848.1| ribosome-binding factor A [Escherichia coli B799]
gi|423727126|ref|ZP_17701040.1| ribosome-binding factor A [Escherichia coli PA31]
gi|424079331|ref|ZP_17816299.1| ribosome-binding factor A [Escherichia coli FDA505]
gi|424085787|ref|ZP_17822274.1| ribosome-binding factor A [Escherichia coli FDA517]
gi|424092189|ref|ZP_17828119.1| ribosome-binding factor A [Escherichia coli FRIK1996]
gi|424098859|ref|ZP_17834135.1| ribosome-binding factor A [Escherichia coli FRIK1985]
gi|424105073|ref|ZP_17839816.1| ribosome-binding factor A [Escherichia coli FRIK1990]
gi|424111719|ref|ZP_17845949.1| ribosome-binding factor A [Escherichia coli 93-001]
gi|424117656|ref|ZP_17851490.1| ribosome-binding factor A [Escherichia coli PA3]
gi|424123845|ref|ZP_17857152.1| ribosome-binding factor A [Escherichia coli PA5]
gi|424129996|ref|ZP_17862899.1| ribosome-binding factor A [Escherichia coli PA9]
gi|424136320|ref|ZP_17868768.1| ribosome-binding factor A [Escherichia coli PA10]
gi|424142872|ref|ZP_17874739.1| ribosome-binding factor A [Escherichia coli PA14]
gi|424149273|ref|ZP_17880644.1| ribosome-binding factor A [Escherichia coli PA15]
gi|424155123|ref|ZP_17886055.1| ribosome-binding factor A [Escherichia coli PA24]
gi|424253722|ref|ZP_17891602.1| ribosome-binding factor A [Escherichia coli PA25]
gi|424332509|ref|ZP_17897506.1| ribosome-binding factor A [Escherichia coli PA28]
gi|424451558|ref|ZP_17903228.1| ribosome-binding factor A [Escherichia coli PA32]
gi|424457748|ref|ZP_17908858.1| ribosome-binding factor A [Escherichia coli PA33]
gi|424464205|ref|ZP_17914582.1| ribosome-binding factor A [Escherichia coli PA39]
gi|424470510|ref|ZP_17920322.1| ribosome-binding factor A [Escherichia coli PA41]
gi|424477018|ref|ZP_17926331.1| ribosome-binding factor A [Escherichia coli PA42]
gi|424482774|ref|ZP_17931750.1| ribosome-binding factor A [Escherichia coli TW07945]
gi|424488957|ref|ZP_17937503.1| ribosome-binding factor A [Escherichia coli TW09098]
gi|424495609|ref|ZP_17943232.1| ribosome-binding factor A [Escherichia coli TW09195]
gi|424502309|ref|ZP_17949196.1| ribosome-binding factor A [Escherichia coli EC4203]
gi|424508562|ref|ZP_17954946.1| ribosome-binding factor A [Escherichia coli EC4196]
gi|424515912|ref|ZP_17960547.1| ribosome-binding factor A [Escherichia coli TW14313]
gi|424522114|ref|ZP_17966226.1| ribosome-binding factor A [Escherichia coli TW14301]
gi|424527991|ref|ZP_17971703.1| ribosome-binding factor A [Escherichia coli EC4421]
gi|424534137|ref|ZP_17977481.1| ribosome-binding factor A [Escherichia coli EC4422]
gi|424540190|ref|ZP_17983130.1| ribosome-binding factor A [Escherichia coli EC4013]
gi|424546318|ref|ZP_17988687.1| ribosome-binding factor A [Escherichia coli EC4402]
gi|424552541|ref|ZP_17994382.1| ribosome-binding factor A [Escherichia coli EC4439]
gi|424558731|ref|ZP_18000137.1| ribosome-binding factor A [Escherichia coli EC4436]
gi|424565068|ref|ZP_18006067.1| ribosome-binding factor A [Escherichia coli EC4437]
gi|424571196|ref|ZP_18011741.1| ribosome-binding factor A [Escherichia coli EC4448]
gi|424577352|ref|ZP_18017402.1| ribosome-binding factor A [Escherichia coli EC1845]
gi|424583172|ref|ZP_18022815.1| ribosome-binding factor A [Escherichia coli EC1863]
gi|424746858|ref|ZP_18175075.1| ribosome-binding factor A [Escherichia coli O26:H11 str.
CFSAN001629]
gi|424757932|ref|ZP_18185658.1| ribosome-binding factor A [Escherichia coli O111:H11 str.
CFSAN001630]
gi|424770298|ref|ZP_18197504.1| ribosome-binding factor A [Escherichia coli O111:H8 str.
CFSAN001632]
gi|424817730|ref|ZP_18242881.1| ribosome-binding factor A [Escherichia fergusonii ECD227]
gi|424839421|ref|ZP_18264058.1| ribosome-binding factor A [Shigella flexneri 5a str. M90T]
gi|425099845|ref|ZP_18502574.1| ribosome-binding factor A [Escherichia coli 3.4870]
gi|425105942|ref|ZP_18508256.1| ribosome-binding factor A [Escherichia coli 5.2239]
gi|425111955|ref|ZP_18513872.1| ribosome-binding factor A [Escherichia coli 6.0172]
gi|425116715|ref|ZP_18518505.1| ribosome-binding factor A [Escherichia coli 8.0566]
gi|425121468|ref|ZP_18523154.1| ribosome-binding factor A [Escherichia coli 8.0569]
gi|425127878|ref|ZP_18529042.1| ribosome-binding factor A [Escherichia coli 8.0586]
gi|425133621|ref|ZP_18534467.1| ribosome-binding factor A [Escherichia coli 8.2524]
gi|425140197|ref|ZP_18540575.1| ribosome-binding factor A [Escherichia coli 10.0833]
gi|425145910|ref|ZP_18545901.1| ribosome-binding factor A [Escherichia coli 10.0869]
gi|425152025|ref|ZP_18551636.1| ribosome-binding factor A [Escherichia coli 88.0221]
gi|425157897|ref|ZP_18557157.1| ribosome-binding factor A [Escherichia coli PA34]
gi|425164250|ref|ZP_18563133.1| ribosome-binding factor A [Escherichia coli FDA506]
gi|425169993|ref|ZP_18568462.1| ribosome-binding factor A [Escherichia coli FDA507]
gi|425176052|ref|ZP_18574168.1| ribosome-binding factor A [Escherichia coli FDA504]
gi|425182094|ref|ZP_18579785.1| ribosome-binding factor A [Escherichia coli FRIK1999]
gi|425188361|ref|ZP_18585630.1| ribosome-binding factor A [Escherichia coli FRIK1997]
gi|425195127|ref|ZP_18591893.1| ribosome-binding factor A [Escherichia coli NE1487]
gi|425201602|ref|ZP_18597806.1| ribosome-binding factor A [Escherichia coli NE037]
gi|425207987|ref|ZP_18603780.1| ribosome-binding factor A [Escherichia coli FRIK2001]
gi|425213742|ref|ZP_18609138.1| ribosome-binding factor A [Escherichia coli PA4]
gi|425219864|ref|ZP_18614823.1| ribosome-binding factor A [Escherichia coli PA23]
gi|425226414|ref|ZP_18620877.1| ribosome-binding factor A [Escherichia coli PA49]
gi|425232671|ref|ZP_18626707.1| ribosome-binding factor A [Escherichia coli PA45]
gi|425238595|ref|ZP_18632311.1| ribosome-binding factor A [Escherichia coli TT12B]
gi|425244831|ref|ZP_18638133.1| ribosome-binding factor A [Escherichia coli MA6]
gi|425251022|ref|ZP_18643961.1| ribosome-binding factor A [Escherichia coli 5905]
gi|425256809|ref|ZP_18649317.1| ribosome-binding factor A [Escherichia coli CB7326]
gi|425263060|ref|ZP_18655059.1| ribosome-binding factor A [Escherichia coli EC96038]
gi|425269057|ref|ZP_18660684.1| ribosome-binding factor A [Escherichia coli 5412]
gi|425274363|ref|ZP_18665761.1| ribosome-binding factor A [Escherichia coli TW15901]
gi|425279568|ref|ZP_18670796.1| ribosome-binding factor A [Escherichia coli ARS4.2123]
gi|425284943|ref|ZP_18675973.1| ribosome-binding factor A [Escherichia coli TW00353]
gi|425290307|ref|ZP_18681133.1| ribosome-binding factor A [Escherichia coli 3006]
gi|425296512|ref|ZP_18686676.1| ribosome-binding factor A [Escherichia coli PA38]
gi|425302038|ref|ZP_18691922.1| ribosome-binding factor A [Escherichia coli 07798]
gi|425306959|ref|ZP_18696639.1| ribosome-binding factor A [Escherichia coli N1]
gi|425313200|ref|ZP_18702375.1| ribosome-binding factor A [Escherichia coli EC1735]
gi|425319184|ref|ZP_18707968.1| ribosome-binding factor A [Escherichia coli EC1736]
gi|425325276|ref|ZP_18713629.1| ribosome-binding factor A [Escherichia coli EC1737]
gi|425331643|ref|ZP_18719477.1| ribosome-binding factor A [Escherichia coli EC1846]
gi|425337824|ref|ZP_18725177.1| ribosome-binding factor A [Escherichia coli EC1847]
gi|425344132|ref|ZP_18731019.1| ribosome-binding factor A [Escherichia coli EC1848]
gi|425349940|ref|ZP_18736404.1| ribosome-binding factor A [Escherichia coli EC1849]
gi|425356241|ref|ZP_18742305.1| ribosome-binding factor A [Escherichia coli EC1850]
gi|425362203|ref|ZP_18747847.1| ribosome-binding factor A [Escherichia coli EC1856]
gi|425368421|ref|ZP_18753541.1| ribosome-binding factor A [Escherichia coli EC1862]
gi|425374738|ref|ZP_18759376.1| ribosome-binding factor A [Escherichia coli EC1864]
gi|425381444|ref|ZP_18765443.1| ribosome-binding factor A [Escherichia coli EC1865]
gi|425387626|ref|ZP_18771181.1| ribosome-binding factor A [Escherichia coli EC1866]
gi|425394277|ref|ZP_18777382.1| ribosome-binding factor A [Escherichia coli EC1868]
gi|425400419|ref|ZP_18783120.1| ribosome-binding factor A [Escherichia coli EC1869]
gi|425406506|ref|ZP_18788724.1| ribosome-binding factor A [Escherichia coli EC1870]
gi|425412892|ref|ZP_18794651.1| ribosome-binding factor A [Escherichia coli NE098]
gi|425419206|ref|ZP_18800471.1| ribosome-binding factor A [Escherichia coli FRIK523]
gi|425424043|ref|ZP_18805201.1| ribosome-binding factor A [Escherichia coli 0.1288]
gi|425430479|ref|ZP_18811084.1| ribosome-binding factor A [Escherichia coli 0.1304]
gi|427806370|ref|ZP_18973437.1| ribosome-binding factor A [Escherichia coli chi7122]
gi|427810961|ref|ZP_18978026.1| ribosome-binding factor A [Escherichia coli]
gi|428948912|ref|ZP_19021184.1| ribosome-binding factor A [Escherichia coli 88.1467]
gi|428954986|ref|ZP_19026778.1| ribosome-binding factor A [Escherichia coli 88.1042]
gi|428960974|ref|ZP_19032265.1| ribosome-binding factor A [Escherichia coli 89.0511]
gi|428967591|ref|ZP_19038299.1| ribosome-binding factor A [Escherichia coli 90.0091]
gi|428973444|ref|ZP_19043766.1| ribosome-binding factor A [Escherichia coli 90.0039]
gi|428979845|ref|ZP_19049661.1| ribosome-binding factor A [Escherichia coli 90.2281]
gi|428985578|ref|ZP_19054967.1| ribosome-binding factor A [Escherichia coli 93.0055]
gi|428991706|ref|ZP_19060690.1| ribosome-binding factor A [Escherichia coli 93.0056]
gi|428997594|ref|ZP_19066184.1| ribosome-binding factor A [Escherichia coli 94.0618]
gi|429003862|ref|ZP_19071959.1| ribosome-binding factor A [Escherichia coli 95.0183]
gi|429009961|ref|ZP_19077415.1| ribosome-binding factor A [Escherichia coli 95.1288]
gi|429016483|ref|ZP_19083361.1| ribosome-binding factor A [Escherichia coli 95.0943]
gi|429022393|ref|ZP_19088909.1| ribosome-binding factor A [Escherichia coli 96.0428]
gi|429028382|ref|ZP_19094371.1| ribosome-binding factor A [Escherichia coli 96.0427]
gi|429034557|ref|ZP_19100075.1| ribosome-binding factor A [Escherichia coli 96.0939]
gi|429040642|ref|ZP_19105738.1| ribosome-binding factor A [Escherichia coli 96.0932]
gi|429046590|ref|ZP_19111298.1| ribosome-binding factor A [Escherichia coli 96.0107]
gi|429051913|ref|ZP_19116475.1| ribosome-binding factor A [Escherichia coli 97.0003]
gi|429057363|ref|ZP_19121649.1| ribosome-binding factor A [Escherichia coli 97.1742]
gi|429062864|ref|ZP_19126852.1| ribosome-binding factor A [Escherichia coli 97.0007]
gi|429069098|ref|ZP_19132550.1| ribosome-binding factor A [Escherichia coli 99.0672]
gi|429075038|ref|ZP_19138286.1| ribosome-binding factor A [Escherichia coli 99.0678]
gi|429080238|ref|ZP_19143370.1| ribosome-binding factor A [Escherichia coli 99.0713]
gi|429720837|ref|ZP_19255759.1| ribosome-binding factor A [Escherichia coli O104:H4 str. Ec11-9450]
gi|429772735|ref|ZP_19304753.1| ribosome-binding factor A [Escherichia coli O104:H4 str. 11-02030]
gi|429778101|ref|ZP_19310069.1| ribosome-binding factor A [Escherichia coli O104:H4 str.
11-02033-1]
gi|429786407|ref|ZP_19318300.1| ribosome-binding factor A [Escherichia coli O104:H4 str. 11-02092]
gi|429787351|ref|ZP_19319241.1| ribosome-binding factor A [Escherichia coli O104:H4 str. 11-02093]
gi|429793147|ref|ZP_19324993.1| ribosome-binding factor A [Escherichia coli O104:H4 str. 11-02281]
gi|429799726|ref|ZP_19331520.1| ribosome-binding factor A [Escherichia coli O104:H4 str. 11-02318]
gi|429803342|ref|ZP_19335100.1| ribosome-binding factor A [Escherichia coli O104:H4 str. 11-02913]
gi|429807983|ref|ZP_19339703.1| ribosome-binding factor A [Escherichia coli O104:H4 str. 11-03439]
gi|429813682|ref|ZP_19345359.1| ribosome-binding factor A [Escherichia coli O104:H4 str. 11-04080]
gi|429818893|ref|ZP_19350525.1| ribosome-binding factor A [Escherichia coli O104:H4 str. 11-03943]
gi|429828280|ref|ZP_19359299.1| ribosome-binding factor A [Escherichia coli 96.0109]
gi|429834715|ref|ZP_19365016.1| ribosome-binding factor A [Escherichia coli 97.0010]
gi|429905241|ref|ZP_19371218.1| ribosome-binding factor A [Escherichia coli O104:H4 str. Ec11-9990]
gi|429909377|ref|ZP_19375340.1| ribosome-binding factor A [Escherichia coli O104:H4 str. Ec11-9941]
gi|429915249|ref|ZP_19381195.1| ribosome-binding factor A [Escherichia coli O104:H4 str. Ec11-4984]
gi|429920295|ref|ZP_19386223.1| ribosome-binding factor A [Escherichia coli O104:H4 str. Ec11-5604]
gi|429926099|ref|ZP_19392011.1| ribosome-binding factor A [Escherichia coli O104:H4 str. Ec11-4986]
gi|429930034|ref|ZP_19395935.1| ribosome-binding factor A [Escherichia coli O104:H4 str. Ec11-4987]
gi|429936573|ref|ZP_19402458.1| ribosome-binding factor A [Escherichia coli O104:H4 str. Ec11-4988]
gi|429942254|ref|ZP_19408127.1| ribosome-binding factor A [Escherichia coli O104:H4 str. Ec11-5603]
gi|429944937|ref|ZP_19410798.1| ribosome-binding factor A [Escherichia coli O104:H4 str. Ec11-6006]
gi|429952493|ref|ZP_19418338.1| ribosome-binding factor A [Escherichia coli O104:H4 str. Ec12-0465]
gi|429955848|ref|ZP_19421678.1| ribosome-binding factor A [Escherichia coli O104:H4 str. Ec12-0466]
gi|432355175|ref|ZP_19598443.1| ribosome-binding factor A [Escherichia coli KTE2]
gi|432359623|ref|ZP_19602837.1| ribosome-binding factor A [Escherichia coli KTE4]
gi|432364420|ref|ZP_19607577.1| ribosome-binding factor A [Escherichia coli KTE5]
gi|432366626|ref|ZP_19609744.1| ribosome-binding factor A [Escherichia coli KTE10]
gi|432373744|ref|ZP_19616776.1| ribosome-binding factor A [Escherichia coli KTE11]
gi|432378357|ref|ZP_19621341.1| ribosome-binding factor A [Escherichia coli KTE12]
gi|432382899|ref|ZP_19625838.1| ribosome-binding factor A [Escherichia coli KTE15]
gi|432388930|ref|ZP_19631810.1| ribosome-binding factor A [Escherichia coli KTE16]
gi|432393760|ref|ZP_19636584.1| ribosome-binding factor A [Escherichia coli KTE21]
gi|432399123|ref|ZP_19641898.1| ribosome-binding factor A [Escherichia coli KTE25]
gi|432403550|ref|ZP_19646295.1| ribosome-binding factor A [Escherichia coli KTE26]
gi|432408248|ref|ZP_19650952.1| ribosome-binding factor A [Escherichia coli KTE28]
gi|432413398|ref|ZP_19656053.1| ribosome-binding factor A [Escherichia coli KTE39]
gi|432418694|ref|ZP_19661289.1| ribosome-binding factor A [Escherichia coli KTE44]
gi|432423583|ref|ZP_19666122.1| ribosome-binding factor A [Escherichia coli KTE178]
gi|432427811|ref|ZP_19670295.1| ribosome-binding factor A [Escherichia coli KTE181]
gi|432433389|ref|ZP_19675814.1| ribosome-binding factor A [Escherichia coli KTE187]
gi|432437984|ref|ZP_19680368.1| ribosome-binding factor A [Escherichia coli KTE188]
gi|432442660|ref|ZP_19684996.1| ribosome-binding factor A [Escherichia coli KTE189]
gi|432447780|ref|ZP_19690077.1| ribosome-binding factor A [Escherichia coli KTE191]
gi|432451414|ref|ZP_19693671.1| ribosome-binding factor A [Escherichia coli KTE193]
gi|432458297|ref|ZP_19700474.1| ribosome-binding factor A [Escherichia coli KTE201]
gi|432462514|ref|ZP_19704648.1| ribosome-binding factor A [Escherichia coli KTE204]
gi|432467488|ref|ZP_19709567.1| ribosome-binding factor A [Escherichia coli KTE205]
gi|432472521|ref|ZP_19714559.1| ribosome-binding factor A [Escherichia coli KTE206]
gi|432477507|ref|ZP_19719497.1| ribosome-binding factor A [Escherichia coli KTE208]
gi|432482503|ref|ZP_19724454.1| ribosome-binding factor A [Escherichia coli KTE210]
gi|432486937|ref|ZP_19728847.1| ribosome-binding factor A [Escherichia coli KTE212]
gi|432490954|ref|ZP_19732818.1| ribosome-binding factor A [Escherichia coli KTE213]
gi|432497290|ref|ZP_19739083.1| ribosome-binding factor A [Escherichia coli KTE214]
gi|432501732|ref|ZP_19743484.1| ribosome-binding factor A [Escherichia coli KTE216]
gi|432506047|ref|ZP_19747767.1| ribosome-binding factor A [Escherichia coli KTE220]
gi|432515566|ref|ZP_19752782.1| ribosome-binding factor A [Escherichia coli KTE224]
gi|432519369|ref|ZP_19756549.1| ribosome-binding factor A [Escherichia coli KTE228]
gi|432525502|ref|ZP_19762621.1| ribosome-binding factor A [Escherichia coli KTE230]
gi|432528011|ref|ZP_19765088.1| ribosome-binding factor A [Escherichia coli KTE233]
gi|432535513|ref|ZP_19772477.1| ribosome-binding factor A [Escherichia coli KTE234]
gi|432539527|ref|ZP_19776421.1| ribosome-binding factor A [Escherichia coli KTE235]
gi|432544913|ref|ZP_19781748.1| ribosome-binding factor A [Escherichia coli KTE236]
gi|432550395|ref|ZP_19787155.1| ribosome-binding factor A [Escherichia coli KTE237]
gi|432555239|ref|ZP_19791958.1| ribosome-binding factor A [Escherichia coli KTE47]
gi|432560445|ref|ZP_19797101.1| ribosome-binding factor A [Escherichia coli KTE49]
gi|432565534|ref|ZP_19802098.1| ribosome-binding factor A [Escherichia coli KTE51]
gi|432570399|ref|ZP_19806906.1| ribosome-binding factor A [Escherichia coli KTE53]
gi|432575370|ref|ZP_19811844.1| ribosome-binding factor A [Escherichia coli KTE55]
gi|432577404|ref|ZP_19813854.1| ribosome-binding factor A [Escherichia coli KTE56]
gi|432581632|ref|ZP_19818046.1| ribosome-binding factor A [Escherichia coli KTE57]
gi|432589554|ref|ZP_19825907.1| ribosome-binding factor A [Escherichia coli KTE58]
gi|432594370|ref|ZP_19830683.1| ribosome-binding factor A [Escherichia coli KTE60]
gi|432599422|ref|ZP_19835693.1| ribosome-binding factor A [Escherichia coli KTE62]
gi|432604008|ref|ZP_19840239.1| ribosome-binding factor A [Escherichia coli KTE66]
gi|432609210|ref|ZP_19845392.1| ribosome-binding factor A [Escherichia coli KTE67]
gi|432613180|ref|ZP_19849338.1| ribosome-binding factor A [Escherichia coli KTE72]
gi|432618418|ref|ZP_19854523.1| ribosome-binding factor A [Escherichia coli KTE75]
gi|432623535|ref|ZP_19859554.1| ribosome-binding factor A [Escherichia coli KTE76]
gi|432628804|ref|ZP_19864774.1| ribosome-binding factor A [Escherichia coli KTE77]
gi|432633047|ref|ZP_19868968.1| ribosome-binding factor A [Escherichia coli KTE80]
gi|432638377|ref|ZP_19874243.1| ribosome-binding factor A [Escherichia coli KTE81]
gi|432642737|ref|ZP_19878563.1| ribosome-binding factor A [Escherichia coli KTE83]
gi|432647848|ref|ZP_19883634.1| ribosome-binding factor A [Escherichia coli KTE86]
gi|432652768|ref|ZP_19888514.1| ribosome-binding factor A [Escherichia coli KTE87]
gi|432657411|ref|ZP_19893108.1| ribosome-binding factor A [Escherichia coli KTE93]
gi|432662381|ref|ZP_19898017.1| ribosome-binding factor A [Escherichia coli KTE111]
gi|432667734|ref|ZP_19903307.1| ribosome-binding factor A [Escherichia coli KTE116]
gi|432672266|ref|ZP_19907790.1| ribosome-binding factor A [Escherichia coli KTE119]
gi|432676295|ref|ZP_19911745.1| ribosome-binding factor A [Escherichia coli KTE142]
gi|432681897|ref|ZP_19917256.1| ribosome-binding factor A [Escherichia coli KTE143]
gi|432686990|ref|ZP_19922281.1| ribosome-binding factor A [Escherichia coli KTE156]
gi|432688445|ref|ZP_19923717.1| ribosome-binding factor A [Escherichia coli KTE161]
gi|432696042|ref|ZP_19931235.1| ribosome-binding factor A [Escherichia coli KTE162]
gi|432700692|ref|ZP_19935837.1| ribosome-binding factor A [Escherichia coli KTE169]
gi|432705910|ref|ZP_19941006.1| ribosome-binding factor A [Escherichia coli KTE171]
gi|432707519|ref|ZP_19942596.1| ribosome-binding factor A [Escherichia coli KTE6]
gi|432715021|ref|ZP_19950049.1| ribosome-binding factor A [Escherichia coli KTE8]
gi|432720304|ref|ZP_19955269.1| ribosome-binding factor A [Escherichia coli KTE9]
gi|432724641|ref|ZP_19959555.1| ribosome-binding factor A [Escherichia coli KTE17]
gi|432729224|ref|ZP_19964099.1| ribosome-binding factor A [Escherichia coli KTE18]
gi|432733927|ref|ZP_19968752.1| ribosome-binding factor A [Escherichia coli KTE45]
gi|432738655|ref|ZP_19973407.1| ribosome-binding factor A [Escherichia coli KTE42]
gi|432742911|ref|ZP_19977626.1| ribosome-binding factor A [Escherichia coli KTE23]
gi|432747154|ref|ZP_19981816.1| ribosome-binding factor A [Escherichia coli KTE43]
gi|432756104|ref|ZP_19990649.1| ribosome-binding factor A [Escherichia coli KTE22]
gi|432761013|ref|ZP_19995503.1| ribosome-binding factor A [Escherichia coli KTE46]
gi|432766574|ref|ZP_20000990.1| ribosome-binding factor A [Escherichia coli KTE48]
gi|432767542|ref|ZP_20001936.1| ribosome-binding factor A [Escherichia coli KTE50]
gi|432776252|ref|ZP_20010515.1| ribosome-binding factor A [Escherichia coli KTE54]
gi|432780184|ref|ZP_20014405.1| ribosome-binding factor A [Escherichia coli KTE59]
gi|432785142|ref|ZP_20019320.1| ribosome-binding factor A [Escherichia coli KTE63]
gi|432789177|ref|ZP_20023305.1| ribosome-binding factor A [Escherichia coli KTE65]
gi|432794394|ref|ZP_20028476.1| ribosome-binding factor A [Escherichia coli KTE78]
gi|432795911|ref|ZP_20029952.1| ribosome-binding factor A [Escherichia coli KTE79]
gi|432803353|ref|ZP_20037307.1| ribosome-binding factor A [Escherichia coli KTE84]
gi|432807431|ref|ZP_20041346.1| ribosome-binding factor A [Escherichia coli KTE91]
gi|432810901|ref|ZP_20044760.1| ribosome-binding factor A [Escherichia coli KTE101]
gi|432816943|ref|ZP_20050704.1| ribosome-binding factor A [Escherichia coli KTE115]
gi|432822612|ref|ZP_20056301.1| ribosome-binding factor A [Escherichia coli KTE118]
gi|432824067|ref|ZP_20057737.1| ribosome-binding factor A [Escherichia coli KTE123]
gi|432828806|ref|ZP_20062424.1| ribosome-binding factor A [Escherichia coli KTE135]
gi|432836131|ref|ZP_20069664.1| ribosome-binding factor A [Escherichia coli KTE136]
gi|432840980|ref|ZP_20074440.1| ribosome-binding factor A [Escherichia coli KTE140]
gi|432846218|ref|ZP_20078899.1| ribosome-binding factor A [Escherichia coli KTE141]
gi|432854313|ref|ZP_20082858.1| ribosome-binding factor A [Escherichia coli KTE144]
gi|432865081|ref|ZP_20088329.1| ribosome-binding factor A [Escherichia coli KTE146]
gi|432870632|ref|ZP_20091089.1| ribosome-binding factor A [Escherichia coli KTE147]
gi|432877163|ref|ZP_20094961.1| ribosome-binding factor A [Escherichia coli KTE154]
gi|432888475|ref|ZP_20102227.1| ribosome-binding factor A [Escherichia coli KTE158]
gi|432890546|ref|ZP_20103478.1| ribosome-binding factor A [Escherichia coli KTE165]
gi|432900399|ref|ZP_20110821.1| ribosome-binding factor A [Escherichia coli KTE192]
gi|432906818|ref|ZP_20115357.1| ribosome-binding factor A [Escherichia coli KTE194]
gi|432914664|ref|ZP_20120080.1| ribosome-binding factor A [Escherichia coli KTE190]
gi|432922190|ref|ZP_20125154.1| ribosome-binding factor A [Escherichia coli KTE173]
gi|432928989|ref|ZP_20130090.1| ribosome-binding factor A [Escherichia coli KTE175]
gi|432936357|ref|ZP_20135491.1| ribosome-binding factor A [Escherichia coli KTE184]
gi|432939797|ref|ZP_20137900.1| ribosome-binding factor A [Escherichia coli KTE183]
gi|432949235|ref|ZP_20144158.1| ribosome-binding factor A [Escherichia coli KTE196]
gi|432956928|ref|ZP_20148531.1| ribosome-binding factor A [Escherichia coli KTE197]
gi|432963628|ref|ZP_20153047.1| ribosome-binding factor A [Escherichia coli KTE202]
gi|432969237|ref|ZP_20158149.1| ribosome-binding factor A [Escherichia coli KTE203]
gi|432973449|ref|ZP_20162295.1| ribosome-binding factor A [Escherichia coli KTE207]
gi|432975377|ref|ZP_20164212.1| ribosome-binding factor A [Escherichia coli KTE209]
gi|432982621|ref|ZP_20171392.1| ribosome-binding factor A [Escherichia coli KTE211]
gi|432987023|ref|ZP_20175736.1| ribosome-binding factor A [Escherichia coli KTE215]
gi|432992275|ref|ZP_20180934.1| ribosome-binding factor A [Escherichia coli KTE217]
gi|432996937|ref|ZP_20185520.1| ribosome-binding factor A [Escherichia coli KTE218]
gi|433001533|ref|ZP_20190052.1| ribosome-binding factor A [Escherichia coli KTE223]
gi|433006756|ref|ZP_20195180.1| ribosome-binding factor A [Escherichia coli KTE227]
gi|433009371|ref|ZP_20197784.1| ribosome-binding factor A [Escherichia coli KTE229]
gi|433015475|ref|ZP_20203810.1| ribosome-binding factor A [Escherichia coli KTE104]
gi|433020302|ref|ZP_20208468.1| ribosome-binding factor A [Escherichia coli KTE105]
gi|433025040|ref|ZP_20213014.1| ribosome-binding factor A [Escherichia coli KTE106]
gi|433030086|ref|ZP_20217938.1| ribosome-binding factor A [Escherichia coli KTE109]
gi|433035061|ref|ZP_20222760.1| ribosome-binding factor A [Escherichia coli KTE112]
gi|433040173|ref|ZP_20227766.1| ribosome-binding factor A [Escherichia coli KTE113]
gi|433044713|ref|ZP_20232200.1| ribosome-binding factor A [Escherichia coli KTE117]
gi|433049605|ref|ZP_20236943.1| ribosome-binding factor A [Escherichia coli KTE120]
gi|433054805|ref|ZP_20241972.1| ribosome-binding factor A [Escherichia coli KTE122]
gi|433059657|ref|ZP_20246694.1| ribosome-binding factor A [Escherichia coli KTE124]
gi|433064624|ref|ZP_20251535.1| ribosome-binding factor A [Escherichia coli KTE125]
gi|433069490|ref|ZP_20256265.1| ribosome-binding factor A [Escherichia coli KTE128]
gi|433074427|ref|ZP_20261069.1| ribosome-binding factor A [Escherichia coli KTE129]
gi|433079360|ref|ZP_20265880.1| ribosome-binding factor A [Escherichia coli KTE131]
gi|433084101|ref|ZP_20270549.1| ribosome-binding factor A [Escherichia coli KTE133]
gi|433088826|ref|ZP_20275192.1| ribosome-binding factor A [Escherichia coli KTE137]
gi|433093557|ref|ZP_20279814.1| ribosome-binding factor A [Escherichia coli KTE138]
gi|433097977|ref|ZP_20284153.1| ribosome-binding factor A [Escherichia coli KTE139]
gi|433102761|ref|ZP_20288834.1| ribosome-binding factor A [Escherichia coli KTE145]
gi|433107425|ref|ZP_20293390.1| ribosome-binding factor A [Escherichia coli KTE148]
gi|433112407|ref|ZP_20298263.1| ribosome-binding factor A [Escherichia coli KTE150]
gi|433117052|ref|ZP_20302838.1| ribosome-binding factor A [Escherichia coli KTE153]
gi|433121739|ref|ZP_20307400.1| ribosome-binding factor A [Escherichia coli KTE157]
gi|433126740|ref|ZP_20312287.1| ribosome-binding factor A [Escherichia coli KTE160]
gi|433131730|ref|ZP_20317160.1| ribosome-binding factor A [Escherichia coli KTE163]
gi|433136414|ref|ZP_20321749.1| ribosome-binding factor A [Escherichia coli KTE166]
gi|433140804|ref|ZP_20326050.1| ribosome-binding factor A [Escherichia coli KTE167]
gi|433145779|ref|ZP_20330913.1| ribosome-binding factor A [Escherichia coli KTE168]
gi|433150809|ref|ZP_20335810.1| ribosome-binding factor A [Escherichia coli KTE174]
gi|433155321|ref|ZP_20340254.1| ribosome-binding factor A [Escherichia coli KTE176]
gi|433160282|ref|ZP_20345109.1| ribosome-binding factor A [Escherichia coli KTE177]
gi|433165162|ref|ZP_20349893.1| ribosome-binding factor A [Escherichia coli KTE179]
gi|433170138|ref|ZP_20354761.1| ribosome-binding factor A [Escherichia coli KTE180]
gi|433175061|ref|ZP_20359575.1| ribosome-binding factor A [Escherichia coli KTE232]
gi|433180002|ref|ZP_20364388.1| ribosome-binding factor A [Escherichia coli KTE82]
gi|433184890|ref|ZP_20369128.1| ribosome-binding factor A [Escherichia coli KTE85]
gi|433189980|ref|ZP_20374069.1| ribosome-binding factor A [Escherichia coli KTE88]
gi|433195215|ref|ZP_20379194.1| ribosome-binding factor A [Escherichia coli KTE90]
gi|433199919|ref|ZP_20383807.1| ribosome-binding factor A [Escherichia coli KTE94]
gi|433204896|ref|ZP_20388648.1| ribosome-binding factor A [Escherichia coli KTE95]
gi|433209299|ref|ZP_20392967.1| ribosome-binding factor A [Escherichia coli KTE97]
gi|433214149|ref|ZP_20397732.1| ribosome-binding factor A [Escherichia coli KTE99]
gi|433325702|ref|ZP_20402761.1| ribosome-binding factor A [Escherichia coli J96]
gi|442592999|ref|ZP_21010955.1| Ribosome-binding factor A [Escherichia coli O10:K5(L):H4 str. ATCC
23506]
gi|442597236|ref|ZP_21015032.1| Ribosome-binding factor A [Escherichia coli O5:K4(L):H4 str. ATCC
23502]
gi|442605373|ref|ZP_21020205.1| Ribosome-binding factor A [Escherichia coli Nissle 1917]
gi|443619241|ref|YP_007383097.1| ribosome-binding factor A [Escherichia coli APEC O78]
gi|444926795|ref|ZP_21246070.1| ribosome-binding factor A [Escherichia coli 09BKT078844]
gi|444932481|ref|ZP_21251502.1| ribosome-binding factor A [Escherichia coli 99.0814]
gi|444937907|ref|ZP_21256664.1| ribosome-binding factor A [Escherichia coli 99.0815]
gi|444943500|ref|ZP_21262001.1| ribosome-binding factor A [Escherichia coli 99.0816]
gi|444949004|ref|ZP_21267307.1| ribosome-binding factor A [Escherichia coli 99.0839]
gi|444954606|ref|ZP_21272684.1| ribosome-binding factor A [Escherichia coli 99.0848]
gi|444960077|ref|ZP_21277912.1| ribosome-binding factor A [Escherichia coli 99.1753]
gi|444965323|ref|ZP_21282902.1| ribosome-binding factor A [Escherichia coli 99.1775]
gi|444971261|ref|ZP_21288610.1| ribosome-binding factor A [Escherichia coli 99.1793]
gi|444976507|ref|ZP_21293610.1| ribosome-binding factor A [Escherichia coli 99.1805]
gi|444981947|ref|ZP_21298850.1| ribosome-binding factor A [Escherichia coli ATCC 700728]
gi|444987306|ref|ZP_21304080.1| ribosome-binding factor A [Escherichia coli PA11]
gi|444992614|ref|ZP_21309254.1| ribosome-binding factor A [Escherichia coli PA19]
gi|444997900|ref|ZP_21314395.1| ribosome-binding factor A [Escherichia coli PA13]
gi|445003496|ref|ZP_21319881.1| ribosome-binding factor A [Escherichia coli PA2]
gi|445008868|ref|ZP_21325105.1| ribosome-binding factor A [Escherichia coli PA47]
gi|445014032|ref|ZP_21330134.1| ribosome-binding factor A [Escherichia coli PA48]
gi|445019909|ref|ZP_21335871.1| ribosome-binding factor A [Escherichia coli PA8]
gi|445025316|ref|ZP_21341135.1| ribosome-binding factor A [Escherichia coli 7.1982]
gi|445030741|ref|ZP_21346406.1| ribosome-binding factor A [Escherichia coli 99.1781]
gi|445036172|ref|ZP_21351696.1| ribosome-binding factor A [Escherichia coli 99.1762]
gi|445041793|ref|ZP_21357161.1| ribosome-binding factor A [Escherichia coli PA35]
gi|445047056|ref|ZP_21362301.1| ribosome-binding factor A [Escherichia coli 3.4880]
gi|445052574|ref|ZP_21367598.1| ribosome-binding factor A [Escherichia coli 95.0083]
gi|445058271|ref|ZP_21373127.1| ribosome-binding factor A [Escherichia coli 99.0670]
gi|450193272|ref|ZP_21891929.1| ribosome-binding factor A [Escherichia coli SEPT362]
gi|450222734|ref|ZP_21896889.1| ribosome-binding factor A [Escherichia coli O08]
gi|450250558|ref|ZP_21901644.1| ribosome-binding factor A [Escherichia coli S17]
gi|452968176|ref|ZP_21966403.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4009]
gi|67471971|sp|P0A7G2.2|RBFA_ECOLI RecName: Full=Ribosome-binding factor A; AltName: Full=Protein P15B
gi|67471972|sp|P0A7G3.2|RBFA_ECOL6 RecName: Full=Ribosome-binding factor A
gi|67471973|sp|P0A7G4.2|RBFA_ECO57 RecName: Full=Ribosome-binding factor A
gi|67471974|sp|P0A7G5.2|RBFA_SHIFL RecName: Full=Ribosome-binding factor A
gi|123147649|sp|Q0TCU2.1|RBFA_ECOL5 RecName: Full=Ribosome-binding factor A
gi|123342479|sp|Q0T0B4.1|RBFA_SHIF8 RecName: Full=Ribosome-binding factor A
gi|123558564|sp|Q31W46.1|RBFA_SHIBS RecName: Full=Ribosome-binding factor A
gi|123561526|sp|Q32BG6.1|RBFA_SHIDS RecName: Full=Ribosome-binding factor A
gi|123616074|sp|Q3YX74.1|RBFA_SHISS RecName: Full=Ribosome-binding factor A
gi|166218437|sp|A1AG72.1|RBFA_ECOK1 RecName: Full=Ribosome-binding factor A
gi|166918674|sp|A7ZS64.1|RBFA_ECO24 RecName: Full=Ribosome-binding factor A
gi|166918675|sp|A8A4Y3.1|RBFA_ECOHS RecName: Full=Ribosome-binding factor A
gi|172046242|sp|Q1R6H1.2|RBFA_ECOUT RecName: Full=Ribosome-binding factor A
gi|189039540|sp|B1IQV4.1|RBFA_ECOLC RecName: Full=Ribosome-binding factor A
gi|226723599|sp|B1XGX9.1|RBFA_ECODH RecName: Full=Ribosome-binding factor A
gi|226723600|sp|B6I1P2.1|RBFA_ECOSE RecName: Full=Ribosome-binding factor A
gi|226736644|sp|B7MB88.1|RBFA_ECO45 RecName: Full=Ribosome-binding factor A
gi|226736645|sp|B7NKN6.1|RBFA_ECO7I RecName: Full=Ribosome-binding factor A
gi|226736646|sp|B7M075.1|RBFA_ECO8A RecName: Full=Ribosome-binding factor A
gi|226736647|sp|B7NDF3.1|RBFA_ECOLU RecName: Full=Ribosome-binding factor A
gi|226736648|sp|B1LFR9.1|RBFA_ECOSM RecName: Full=Ribosome-binding factor A
gi|226736649|sp|B7LR36.1|RBFA_ESCF3 RecName: Full=Ribosome-binding factor A
gi|238058487|sp|B5YS57.1|RBFA_ECO5E RecName: Full=Ribosome-binding factor A
gi|238691777|sp|B2U208.1|RBFA_SHIB3 RecName: Full=Ribosome-binding factor A
gi|254789749|sp|B7LHN2.1|RBFA_ECO55 RecName: Full=Ribosome-binding factor A
gi|254789750|sp|B7N0V2.1|RBFA_ECO81 RecName: Full=Ribosome-binding factor A
gi|259551972|sp|C4ZSQ8.1|RBFA_ECOBW RecName: Full=Ribosome-binding factor A
gi|12517778|gb|AAG58303.1|AE005545_5 ribosome-binding factor A [Escherichia coli O157:H7 str. EDL933]
gi|42218|emb|CAA32020.1| P15B gene product (AA 1 - 133) [Escherichia coli]
gi|42222|emb|CAA31634.1| unnamed protein product [Escherichia coli]
gi|606107|gb|AAA57970.1| P15B [Escherichia coli str. K-12 substr. MG1655]
gi|1789558|gb|AAC76201.1| 30s ribosome binding factor [Escherichia coli str. K-12 substr.
MG1655]
gi|13363521|dbj|BAB37471.1| ribosome-binding factor A [Escherichia coli O157:H7 str. Sakai]
gi|30042766|gb|AAP18489.1| ribosome-binding factor A [Shigella flexneri 2a str. 2457T]
gi|56383830|gb|AAN44675.2| ribosome-binding factor A [Shigella flexneri 2a str. 301]
gi|73857181|gb|AAZ89888.1| ribosome-binding factor A [Shigella sonnei Ss046]
gi|81242629|gb|ABB63339.1| ribosome-binding factor A [Shigella dysenteriae Sd197]
gi|81247004|gb|ABB67712.1| ribosome-binding factor A [Shigella boydii Sb227]
gi|85675963|dbj|BAE77213.1| 30s ribosome binding factor [Escherichia coli str. K12 substr.
W3110]
gi|110345000|gb|ABG71237.1| ribosome-binding factor A [Escherichia coli 536]
gi|110616584|gb|ABF05251.1| ribosome-binding factor A [Shigella flexneri 5 str. 8401]
gi|115514587|gb|ABJ02662.1| ribosome-binding factor A [Escherichia coli APEC O1]
gi|157068332|gb|ABV07587.1| ribosome-binding factor A [Escherichia coli HS]
gi|157076979|gb|ABV16687.1| ribosome-binding factor A [Escherichia coli E24377A]
gi|169753509|gb|ACA76208.1| ribosome-binding factor A [Escherichia coli ATCC 8739]
gi|169890539|gb|ACB04246.1| 30s ribosome binding factor [Escherichia coli str. K-12 substr.
DH10B]
gi|170518265|gb|ACB16443.1| ribosome-binding factor A [Escherichia coli SMS-3-5]
gi|187428079|gb|ACD07353.1| ribosome-binding factor A [Shigella boydii CDC 3083-94]
gi|187770833|gb|EDU34677.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4196]
gi|188016404|gb|EDU54526.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4113]
gi|188488174|gb|EDU63277.1| ribosome-binding factor A [Escherichia coli 53638]
gi|189001131|gb|EDU70117.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4076]
gi|189358437|gb|EDU76856.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4401]
gi|189361487|gb|EDU79906.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4486]
gi|189367587|gb|EDU86003.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4501]
gi|189373921|gb|EDU92337.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC869]
gi|189379719|gb|EDU98135.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC508]
gi|190901910|gb|EDV61659.1| ribosome-binding factor A [Escherichia coli B7A]
gi|190907545|gb|EDV67141.1| ribosome-binding factor A [Escherichia coli F11]
gi|192932323|gb|EDV84921.1| ribosome-binding factor A [Escherichia coli E22]
gi|192959187|gb|EDV89622.1| ribosome-binding factor A [Escherichia coli E110019]
gi|194414240|gb|EDX30515.1| ribosome-binding factor A [Escherichia coli B171]
gi|194418048|gb|EDX34142.1| ribosome-binding factor A [Shigella dysenteriae 1012]
gi|194422266|gb|EDX38267.1| ribosome-binding factor A [Escherichia coli 101-1]
gi|208726976|gb|EDZ76577.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4206]
gi|208735708|gb|EDZ84395.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4045]
gi|208739563|gb|EDZ87245.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4042]
gi|209158618|gb|ACI36051.1| ribosome-binding factor A [Escherichia coli O157:H7 str. EC4115]
gi|209758348|gb|ACI77486.1| ribosome-binding factor A [Escherichia coli]
gi|209758350|gb|ACI77487.1| ribosome-binding factor A [Escherichia coli]
gi|209758352|gb|ACI77488.1| ribosome-binding factor A [Escherichia coli]
gi|209758354|gb|ACI77489.1| ribosome-binding factor A [Escherichia coli]
gi|209758356|gb|ACI77490.1| ribosome-binding factor A [Escherichia coli]
gi|209913903|dbj|BAG78977.1| ribosome-binding factor A [Escherichia coli SE11]
gi|217320105|gb|EEC28530.1| ribosome-binding factor A [Escherichia coli O157:H7 str. TW14588]
gi|218353606|emb|CAU99796.1| 30s ribosome binding factor [Escherichia coli 55989]
gi|218357993|emb|CAQ90639.1| 30s ribosome binding factor [Escherichia fergusonii ATCC 35469]
gi|218362507|emb|CAR00131.1| 30s ribosome binding factor [Escherichia coli IAI1]
gi|218367008|emb|CAR04779.1| 30s ribosome binding factor [Escherichia coli S88]
gi|218371924|emb|CAR19780.1| 30s ribosome binding factor [Escherichia coli IAI39]
gi|218429023|emb|CAR09970.2| 30s ribosome binding factor [Escherichia coli ED1a]
gi|218433886|emb|CAR14803.1| 30s ribosome binding factor [Escherichia coli UMN026]
gi|222034886|emb|CAP77629.1| ribosome-binding factor A [Escherichia coli LF82]
gi|227835286|gb|EEJ45752.1| ribosome binding factor A [Escherichia coli 83972]
gi|238859805|gb|ACR61803.1| 30s ribosome binding factor [Escherichia coli BW2952]
gi|242378712|emb|CAQ33502.1| 30S ribosome binding factor [Escherichia coli BL21(DE3)]
gi|253323041|gb|ACT27643.1| ribosome-binding factor A [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|253975012|gb|ACT40683.1| ribosome-binding factor A [Escherichia coli B str. REL606]
gi|253979168|gb|ACT44838.1| ribosome-binding factor A [Escherichia coli BL21(DE3)]
gi|254594518|gb|ACT73879.1| 30s ribosome binding factor [Escherichia coli O157:H7 str. TW14359]
gi|257755945|dbj|BAI27447.1| 30S ribosome binding factor RbfA [Escherichia coli O26:H11 str.
11368]
gi|257761129|dbj|BAI32626.1| 30S ribosome binding factor RbfA [Escherichia coli O103:H2 str.
12009]
gi|257766275|dbj|BAI37770.1| 30S ribosome binding factor RbfA [Escherichia coli O111:H- str.
11128]
gi|260447804|gb|ACX38226.1| ribosome-binding factor A [Escherichia coli DH1]
gi|281180211|dbj|BAI56541.1| ribosome-binding factor A [Escherichia coli SE15]
gi|281602551|gb|ADA75535.1| Ribosome-binding factor A [Shigella flexneri 2002017]
gi|290764416|gb|ADD58377.1| Ribosome-binding factor A [Escherichia coli O55:H7 str. CB9615]
gi|291322593|gb|EFE62022.1| ribosome-binding factor A [Escherichia coli B088]
gi|291426785|gb|EFE99817.1| ribosome-binding factor A [Escherichia coli FVEC1412]
gi|294493732|gb|ADE92488.1| ribosome-binding factor A [Escherichia coli IHE3034]
gi|298277659|gb|EFI19175.1| ribosome-binding factor A [Escherichia coli FVEC1302]
gi|299879883|gb|EFI88094.1| ribosome-binding factor A [Escherichia coli MS 196-1]
gi|300300133|gb|EFJ56518.1| ribosome-binding factor A [Escherichia coli MS 185-1]
gi|300308211|gb|EFJ62731.1| ribosome-binding factor A [Escherichia coli MS 200-1]
gi|300317386|gb|EFJ67170.1| ribosome-binding factor A [Escherichia coli MS 175-1]
gi|300403704|gb|EFJ87242.1| ribosome-binding factor A [Escherichia coli MS 84-1]
gi|300407075|gb|EFJ90613.1| ribosome-binding factor A [Escherichia coli MS 45-1]
gi|300413948|gb|EFJ97258.1| ribosome-binding factor A [Escherichia coli MS 115-1]
gi|300417859|gb|EFK01170.1| ribosome-binding factor A [Escherichia coli MS 182-1]
gi|300451706|gb|EFK15326.1| ribosome-binding factor A [Escherichia coli MS 116-1]
gi|300456937|gb|EFK20430.1| ribosome-binding factor A [Escherichia coli MS 21-1]
gi|300462219|gb|EFK25712.1| ribosome-binding factor A [Escherichia coli MS 187-1]
gi|300523638|gb|EFK44707.1| ribosome-binding factor A [Escherichia coli MS 119-7]
gi|300529879|gb|EFK50941.1| ribosome-binding factor A [Escherichia coli MS 107-1]
gi|300842758|gb|EFK70518.1| ribosome-binding factor A [Escherichia coli MS 124-1]
gi|300846899|gb|EFK74659.1| ribosome-binding factor A [Escherichia coli MS 78-1]
gi|301076823|gb|EFK91629.1| ribosome-binding factor A [Escherichia coli MS 146-1]
gi|305850054|gb|EFM50513.1| ribosome-binding factor A [Escherichia coli NC101]
gi|306907037|gb|EFN37545.1| ribosome-binding factor A [Escherichia coli W]
gi|307555263|gb|ADN48038.1| ribosome-binding factor A [Escherichia coli ABU 83972]
gi|307625232|gb|ADN69536.1| ribosome-binding factor A [Escherichia coli UM146]
gi|308122702|gb|EFO59964.1| ribosome-binding factor A [Escherichia coli MS 145-7]
gi|308926614|gb|EFP72090.1| ribosome-binding factor A [Shigella dysenteriae 1617]
gi|309703595|emb|CBJ02935.1| ribosome-binding factor A [Escherichia coli ETEC H10407]
gi|310332503|gb|EFP99716.1| ribosome-binding factor A [Escherichia coli 1827-70]
gi|312947726|gb|ADR28553.1| ribosome-binding factor A [Escherichia coli O83:H1 str. NRG 857C]
gi|313648591|gb|EFS13033.1| ribosome-binding factor A [Shigella flexneri 2a str. 2457T]
gi|315062475|gb|ADT76802.1| 30S ribosome binding factor [Escherichia coli W]
gi|315137755|dbj|BAJ44914.1| ribosome-binding factor A [Escherichia coli DH1]
gi|315257093|gb|EFU37061.1| ribosome-binding factor A [Escherichia coli MS 85-1]
gi|315288931|gb|EFU48329.1| ribosome-binding factor A [Escherichia coli MS 110-3]
gi|315294912|gb|EFU54251.1| ribosome-binding factor A [Escherichia coli MS 153-1]
gi|315297881|gb|EFU57151.1| ribosome-binding factor A [Escherichia coli MS 16-3]
gi|315617250|gb|EFU97859.1| ribosome-binding factor A [Escherichia coli 3431]
gi|320175531|gb|EFW50627.1| Ribosome-binding factor A [Shigella dysenteriae CDC 74-1112]
gi|320181443|gb|EFW56361.1| Ribosome-binding factor A [Shigella boydii ATCC 9905]
gi|320186656|gb|EFW61380.1| Ribosome-binding factor A [Shigella flexneri CDC 796-83]
gi|320189521|gb|EFW64180.1| Ribosome-binding factor A [Escherichia coli O157:H7 str. EC1212]
gi|320194653|gb|EFW69283.1| Ribosome-binding factor A [Escherichia coli WV_060327]
gi|320202081|gb|EFW76656.1| Ribosome-binding factor A [Escherichia coli EC4100B]
gi|320640239|gb|EFX09811.1| ribosome-binding factor A [Escherichia coli O157:H7 str. G5101]
gi|320645536|gb|EFX14545.1| ribosome-binding factor A [Escherichia coli O157:H- str. 493-89]
gi|320650846|gb|EFX19303.1| ribosome-binding factor A [Escherichia coli O157:H- str. H 2687]
gi|320656227|gb|EFX24139.1| ribosome-binding factor A [Escherichia coli O55:H7 str. 3256-97 TW
07815]
gi|320661917|gb|EFX29325.1| ribosome-binding factor A [Escherichia coli O55:H7 str. USDA 5905]
gi|320666752|gb|EFX33731.1| ribosome-binding factor A [Escherichia coli O157:H7 str. LSU-61]
gi|323154381|gb|EFZ40582.1| ribosome-binding factor A [Escherichia coli EPECa14]
gi|323162861|gb|EFZ48696.1| ribosome-binding factor A [Escherichia coli E128010]
gi|323165125|gb|EFZ50915.1| ribosome-binding factor A [Shigella sonnei 53G]
gi|323173573|gb|EFZ59202.1| ribosome-binding factor A [Escherichia coli LT-68]
gi|323178880|gb|EFZ64456.1| ribosome-binding factor A [Escherichia coli OK1180]
gi|323183122|gb|EFZ68520.1| ribosome-binding factor A [Escherichia coli OK1357]
gi|323189210|gb|EFZ74494.1| ribosome-binding factor A [Escherichia coli RN587/1]
gi|323376937|gb|ADX49205.1| ribosome-binding factor A [Escherichia coli KO11FL]
gi|323936137|gb|EGB32431.1| ribosome-binding protein A [Escherichia coli E1520]
gi|323941731|gb|EGB37910.1| ribosome-binding proteinA [Escherichia coli E482]
gi|323946977|gb|EGB42993.1| ribosome-binding protein A [Escherichia coli H120]
gi|323951313|gb|EGB47188.1| ribosome-binding proteinA [Escherichia coli H252]
gi|323957684|gb|EGB53398.1| ribosome-binding proteinA [Escherichia coli H263]
gi|323961061|gb|EGB56676.1| ribosome-binding proteinA [Escherichia coli H489]
gi|323966349|gb|EGB61783.1| ribosome-binding proteinA [Escherichia coli M863]
gi|323970268|gb|EGB65539.1| ribosome-binding proteinA [Escherichia coli TA007]
gi|323979114|gb|EGB74192.1| ribosome-binding proteinA [Escherichia coli TW10509]
gi|324008766|gb|EGB77985.1| ribosome-binding factor A [Escherichia coli MS 57-2]
gi|324012107|gb|EGB81326.1| ribosome-binding factor A [Escherichia coli MS 60-1]
gi|324018309|gb|EGB87528.1| ribosome-binding factor A [Escherichia coli MS 117-3]
gi|324115227|gb|EGC09191.1| ribosome-binding proteinA [Escherichia fergusonii B253]
gi|325498750|gb|EGC96609.1| ribosome-binding factor A [Escherichia fergusonii ECD227]
gi|326337869|gb|EGD61703.1| Ribosome-binding factor A [Escherichia coli O157:H7 str. 1125]
gi|326347438|gb|EGD71163.1| Ribosome-binding factor A [Escherichia coli O157:H7 str. 1044]
gi|327251948|gb|EGE63634.1| ribosome-binding factor A [Escherichia coli STEC_7v]
gi|331037338|gb|EGI09562.1| ribosome-binding factor A [Escherichia coli H736]
gi|331048155|gb|EGI20232.1| ribosome-binding factor A [Escherichia coli M718]
gi|331054038|gb|EGI26067.1| ribosome-binding factor A [Escherichia coli TA206]
gi|331058029|gb|EGI30011.1| ribosome-binding factor A [Escherichia coli TA143]
gi|331062909|gb|EGI34823.1| ribosome-binding factor A [Escherichia coli TA271]
gi|331068144|gb|EGI39540.1| ribosome-binding factor A [Escherichia coli TA280]
gi|331073313|gb|EGI44636.1| ribosome-binding factor A [Escherichia coli H591]
gi|331078431|gb|EGI49637.1| ribosome-binding factor A [Escherichia coli H299]
gi|332086101|gb|EGI91263.1| ribosome-binding factor A [Shigella boydii 5216-82]
gi|332086394|gb|EGI91541.1| ribosome-binding factor A [Shigella dysenteriae 155-74]
gi|332090730|gb|EGI95824.1| ribosome-binding factor A [Shigella boydii 3594-74]
gi|332345124|gb|AEE58458.1| ribosome-binding factor RbfA [Escherichia coli UMNK88]
gi|332752327|gb|EGJ82717.1| ribosome-binding factor A [Shigella flexneri 4343-70]
gi|332752854|gb|EGJ83239.1| ribosome-binding factor A [Shigella flexneri K-671]
gi|332754590|gb|EGJ84956.1| ribosome-binding factor A [Shigella flexneri 2747-71]
gi|332765164|gb|EGJ95391.1| ribosome-binding factor A [Shigella flexneri 2930-71]
gi|332998809|gb|EGK18405.1| ribosome-binding factor A [Shigella flexneri VA-6]
gi|333000039|gb|EGK19622.1| ribosome-binding factor A [Shigella flexneri K-218]
gi|333014561|gb|EGK33908.1| ribosome-binding factor A [Shigella flexneri K-304]
gi|333971283|gb|AEG38088.1| Ribosome-binding factor A [Escherichia coli NA114]
gi|335574043|gb|EGM60381.1| ribosome-binding factor A [Shigella flexneri J1713]
gi|338768645|gb|EGP23435.1| Ribosome-binding factor A [Escherichia coli PCN033]
gi|339416899|gb|AEJ58571.1| ribosome-binding factor A [Escherichia coli UMNF18]
gi|340732706|gb|EGR61842.1| ribosome-binding factor A [Escherichia coli O104:H4 str. 01-09591]
gi|340738273|gb|EGR72522.1| ribosome-binding factor A [Escherichia coli O104:H4 str. LB226692]
gi|341919273|gb|EGT68885.1| hypothetical protein C22711_2915 [Escherichia coli O104:H4 str.
C227-11]
gi|342362311|gb|EGU26432.1| ribosome-binding factor A [Escherichia coli XH140A]
gi|342929208|gb|EGU97930.1| ribosome-binding factor A [Escherichia coli MS 79-10]
gi|344193079|gb|EGV47163.1| ribosome-binding factor A [Escherichia coli XH001]
gi|345333168|gb|EGW65620.1| ribosome-binding factor A [Escherichia coli STEC_C165-02]
gi|345333890|gb|EGW66336.1| ribosome-binding factor A [Escherichia coli 2534-86]
gi|345336242|gb|EGW68679.1| ribosome-binding factor A [Escherichia coli STEC_B2F1]
gi|345348078|gb|EGW80376.1| ribosome-binding factor A [Escherichia coli STEC_94C]
gi|345349735|gb|EGW82012.1| ribosome-binding factor A [Escherichia coli 3030-1]
gi|345355534|gb|EGW87744.1| ribosome-binding factor A [Escherichia coli STEC_DG131-3]
gi|345360619|gb|EGW92788.1| ribosome-binding factor A [Escherichia coli STEC_EH250]
gi|345371024|gb|EGX02998.1| ribosome-binding factor A [Escherichia coli STEC_MHI813]
gi|345372900|gb|EGX04863.1| ribosome-binding factor A [Escherichia coli G58-1]
gi|345374456|gb|EGX06408.1| ribosome-binding factor A [Escherichia coli STEC_H.1.8]
gi|345385980|gb|EGX15817.1| ribosome-binding factor A [Escherichia coli STEC_S1191]
gi|345392235|gb|EGX22020.1| ribosome-binding factor A [Escherichia coli TX1999]
gi|349739711|gb|AEQ14417.1| 30S ribosome binding factor [Escherichia coli O7:K1 str. CE10]
gi|354860532|gb|EHF20978.1| ribosome-binding factor A [Escherichia coli O104:H4 str. C236-11]
gi|354863850|gb|EHF24281.1| ribosome-binding factor A [Escherichia coli O104:H4 str. C227-11]
gi|354865764|gb|EHF26192.1| ribosome-binding factor A [Escherichia coli O104:H4 str. 04-8351]
gi|354872188|gb|EHF32583.1| ribosome-binding factor A [Escherichia coli O104:H4 str. 09-7901]
gi|354878531|gb|EHF38880.1| ribosome-binding factor A [Escherichia coli O104:H4 str. 11-3677]
gi|354887074|gb|EHF47351.1| ribosome-binding factor A [Escherichia coli O104:H4 str. 11-4404]
gi|354890964|gb|EHF51200.1| ribosome-binding factor A [Escherichia coli O104:H4 str. 11-4522]
gi|354895379|gb|EHF55566.1| ribosome-binding factor A [Escherichia coli O104:H4 str. 11-4623]
gi|354906863|gb|EHF66934.1| ribosome-binding factor A [Escherichia coli O104:H4 str. 11-4632
C1]
gi|354909886|gb|EHF69916.1| ribosome-binding factor A [Escherichia coli O104:H4 str. 11-4632
C2]
gi|354911971|gb|EHF71973.1| ribosome-binding factor A [Escherichia coli O104:H4 str. 11-4632
C3]
gi|354914720|gb|EHF74702.1| ribosome-binding factor A [Escherichia coli O104:H4 str. 11-4632
C4]
gi|354922068|gb|EHF81986.1| ribosome-binding factor A [Escherichia coli O104:H4 str. 11-4632
C5]
gi|355350335|gb|EHF99535.1| ribosome-binding factor A [Escherichia coli cloneA_i1]
gi|355421948|gb|AER86145.1| ribosome-binding factor A [Escherichia coli str. 'clone D i2']
gi|355426868|gb|AER91064.1| ribosome-binding factor A [Escherichia coli str. 'clone D i14']
gi|359333366|dbj|BAL39813.1| 30s ribosome binding factor [Escherichia coli str. K-12 substr.
MDS42]
gi|371594320|gb|EHN83188.1| ribosome-binding factor A [Escherichia coli H494]
gi|371601141|gb|EHN89909.1| ribosome-binding factor A [Escherichia coli TA124]
gi|371604925|gb|EHN93549.1| ribosome-binding factor A [Escherichia coli H397]
gi|371606343|gb|EHN94940.1| ribosome-binding factor A [Escherichia coli E101]
gi|371613102|gb|EHO01603.1| ribosome-binding factor A [Escherichia coli B093]
gi|373246324|gb|EHP65778.1| ribosome-binding factor A [Escherichia coli 4_1_47FAA]
gi|374360566|gb|AEZ42273.1| ribosome-binding factor A [Escherichia coli O55:H7 str. RM12579]
gi|375323087|gb|EHS68810.1| ribosome-binding factor A [Escherichia coli O157:H43 str. T22]
gi|377891090|gb|EHU55543.1| ribosome-binding factor A [Escherichia coli DEC3A]
gi|377891792|gb|EHU56244.1| ribosome-binding factor A [Escherichia coli DEC3B]
gi|377903609|gb|EHU67900.1| ribosome-binding factor A [Escherichia coli DEC3C]
gi|377907793|gb|EHU72016.1| ribosome-binding factor A [Escherichia coli DEC3D]
gi|377909663|gb|EHU73863.1| ribosome-binding factor A [Escherichia coli DEC3E]
gi|377919084|gb|EHU83127.1| ribosome-binding factor A [Escherichia coli DEC3F]
gi|377924477|gb|EHU88424.1| ribosome-binding factor A [Escherichia coli DEC4A]
gi|377928738|gb|EHU92648.1| ribosome-binding factor A [Escherichia coli DEC4B]
gi|377939188|gb|EHV02945.1| ribosome-binding factor A [Escherichia coli DEC4D]
gi|377940038|gb|EHV03790.1| ribosome-binding factor A [Escherichia coli DEC4C]
gi|377945921|gb|EHV09611.1| ribosome-binding factor A [Escherichia coli DEC4E]
gi|377955123|gb|EHV18680.1| ribosome-binding factor A [Escherichia coli DEC4F]
gi|377958524|gb|EHV22037.1| ribosome-binding factor A [Escherichia coli DEC5A]
gi|377963394|gb|EHV26841.1| ribosome-binding factor A [Escherichia coli DEC5B]
gi|377971710|gb|EHV35064.1| ribosome-binding factor A [Escherichia coli DEC5C]
gi|377972829|gb|EHV36174.1| ribosome-binding factor A [Escherichia coli DEC5D]
gi|377982855|gb|EHV46107.1| ribosome-binding factor A [Escherichia coli DEC5E]
gi|377990354|gb|EHV53515.1| ribosome-binding factor A [Escherichia coli DEC6B]
gi|377991774|gb|EHV54924.1| ribosome-binding factor A [Escherichia coli DEC6A]
gi|377994598|gb|EHV57724.1| ribosome-binding factor A [Escherichia coli DEC6C]
gi|378013797|gb|EHV76714.1| ribosome-binding factor A [Escherichia coli DEC7A]
gi|378021860|gb|EHV84555.1| ribosome-binding factor A [Escherichia coli DEC7C]
gi|378025941|gb|EHV88581.1| ribosome-binding factor A [Escherichia coli DEC7D]
gi|378030633|gb|EHV93226.1| ribosome-binding factor A [Escherichia coli DEC7B]
gi|378036233|gb|EHV98777.1| ribosome-binding factor A [Escherichia coli DEC7E]
gi|378044472|gb|EHW06889.1| ribosome-binding factor A [Escherichia coli DEC8A]
gi|378046238|gb|EHW08618.1| ribosome-binding factor A [Escherichia coli DEC8B]
gi|378050817|gb|EHW13144.1| ribosome-binding factor A [Escherichia coli DEC8C]
gi|378060150|gb|EHW22349.1| ribosome-binding factor A [Escherichia coli DEC8D]
gi|378063509|gb|EHW25678.1| ribosome-binding factor A [Escherichia coli DEC8E]
gi|378070359|gb|EHW32438.1| ribosome-binding factor A [Escherichia coli DEC9A]
gi|378075041|gb|EHW37069.1| ribosome-binding factor A [Escherichia coli DEC9B]
gi|378080740|gb|EHW42697.1| ribosome-binding factor A [Escherichia coli DEC9C]
gi|378088232|gb|EHW50087.1| ribosome-binding factor A [Escherichia coli DEC9D]
gi|378091513|gb|EHW53343.1| ribosome-binding factor A [Escherichia coli DEC9E]
gi|378098089|gb|EHW59832.1| ribosome-binding factor A [Escherichia coli DEC10A]
gi|378103363|gb|EHW65032.1| ribosome-binding factor A [Escherichia coli DEC10B]
gi|378108040|gb|EHW69656.1| ribosome-binding factor A [Escherichia coli DEC10C]
gi|378114252|gb|EHW75809.1| ribosome-binding factor A [Escherichia coli DEC10D]
gi|378125797|gb|EHW87195.1| ribosome-binding factor A [Escherichia coli DEC10E]
gi|378127027|gb|EHW88419.1| ribosome-binding factor A [Escherichia coli DEC11A]
gi|378127216|gb|EHW88606.1| ribosome-binding factor A [Escherichia coli DEC10F]
gi|378139362|gb|EHX00602.1| ribosome-binding factor A [Escherichia coli DEC11B]
gi|378145914|gb|EHX07069.1| ribosome-binding factor A [Escherichia coli DEC11D]
gi|378147875|gb|EHX09020.1| ribosome-binding factor A [Escherichia coli DEC11C]
gi|378156216|gb|EHX17268.1| ribosome-binding factor A [Escherichia coli DEC11E]
gi|378162562|gb|EHX23522.1| ribosome-binding factor A [Escherichia coli DEC12B]
gi|378166563|gb|EHX27485.1| ribosome-binding factor A [Escherichia coli DEC12A]
gi|378167597|gb|EHX28509.1| ribosome-binding factor A [Escherichia coli DEC12C]
gi|378180045|gb|EHX40747.1| ribosome-binding factor A [Escherichia coli DEC12D]
gi|378184160|gb|EHX44797.1| ribosome-binding factor A [Escherichia coli DEC12E]
gi|378184866|gb|EHX45502.1| ribosome-binding factor A [Escherichia coli DEC13A]
gi|378197200|gb|EHX57683.1| ribosome-binding factor A [Escherichia coli DEC13C]
gi|378197758|gb|EHX58234.1| ribosome-binding factor A [Escherichia coli DEC13B]
gi|378200718|gb|EHX61172.1| ribosome-binding factor A [Escherichia coli DEC13D]
gi|378210534|gb|EHX70888.1| ribosome-binding factor A [Escherichia coli DEC13E]
gi|378214455|gb|EHX74762.1| ribosome-binding factor A [Escherichia coli DEC14A]
gi|378216749|gb|EHX77033.1| ribosome-binding factor A [Escherichia coli DEC14B]
gi|378226139|gb|EHX86332.1| ribosome-binding factor A [Escherichia coli DEC14C]
gi|378229381|gb|EHX89522.1| ribosome-binding factor A [Escherichia coli DEC14D]
gi|378235579|gb|EHX95647.1| ribosome-binding factor A [Escherichia coli DEC15A]
gi|378241361|gb|EHY01328.1| ribosome-binding factor A [Escherichia coli DEC15B]
gi|378245964|gb|EHY05901.1| ribosome-binding factor A [Escherichia coli DEC15C]
gi|378253428|gb|EHY13306.1| ribosome-binding factor A [Escherichia coli DEC15D]
gi|378257680|gb|EHY17517.1| ribosome-binding factor A [Escherichia coli DEC15E]
gi|380346852|gb|EIA35142.1| ribosome-binding factor A [Escherichia coli SCI-07]
gi|383104602|gb|AFG42111.1| Ribosome-binding factor A [Escherichia coli P12b]
gi|383391390|gb|AFH16348.1| ribosome-binding factor A [Escherichia coli KO11FL]
gi|383406768|gb|AFH13011.1| ribosome-binding factor A [Escherichia coli W]
gi|383468473|gb|EID63494.1| ribosome-binding factor A [Shigella flexneri 5a str. M90T]
gi|383476178|gb|EID68125.1| ribosome-binding factor A [Escherichia coli W26]
gi|384380242|gb|EIE38108.1| ribosome-binding factor A [Escherichia coli J53]
gi|384471662|gb|EIE55734.1| ribosome-binding factor A [Escherichia coli AI27]
gi|385156573|gb|EIF18569.1| ribosome-binding factor A [Escherichia coli O32:H37 str. P4]
gi|385538121|gb|EIF84986.1| ribosome-binding factor A [Escherichia coli M919]
gi|385709842|gb|EIG46835.1| ribosome-binding factor A [Escherichia coli B799]
gi|385710163|gb|EIG47155.1| ribosome-binding factor A [Escherichia coli H730]
gi|386120651|gb|EIG69275.1| ribosome-binding factor A [Escherichia sp. 4_1_40B]
gi|386139257|gb|EIG80412.1| ribosome-binding factor A [Escherichia coli 1.2741]
gi|386146622|gb|EIG93067.1| ribosome-binding factor A [Escherichia coli 97.0246]
gi|386150258|gb|EIH01547.1| ribosome-binding factor A [Escherichia coli 5.0588]
gi|386157904|gb|EIH14242.1| ribosome-binding factor A [Escherichia coli 97.0259]
gi|386162658|gb|EIH24454.1| ribosome-binding factor A [Escherichia coli 1.2264]
gi|386166251|gb|EIH32771.1| ribosome-binding factor A [Escherichia coli 96.0497]
gi|386173392|gb|EIH45404.1| ribosome-binding factor A [Escherichia coli 99.0741]
gi|386177766|gb|EIH55245.1| ribosome-binding factor A [Escherichia coli 3.2608]
gi|386183737|gb|EIH66484.1| ribosome-binding factor A [Escherichia coli 93.0624]
gi|386188884|gb|EIH77673.1| ribosome-binding factor A [Escherichia coli 4.0522]
gi|386195521|gb|EIH89756.1| ribosome-binding factor A [Escherichia coli JB1-95]
gi|386201015|gb|EII00006.1| ribosome-binding factor A [Escherichia coli 96.154]
gi|386208341|gb|EII12846.1| ribosome-binding factor A [Escherichia coli 5.0959]
gi|386210453|gb|EII20927.1| ribosome-binding factor A [Escherichia coli 9.0111]
gi|386219511|gb|EII35975.1| ribosome-binding factor A [Escherichia coli 4.0967]
gi|386221802|gb|EII44231.1| ribosome-binding factor A [Escherichia coli 2.3916]
gi|386229618|gb|EII56973.1| ribosome-binding factor A [Escherichia coli 3.3884]
gi|386235077|gb|EII67053.1| ribosome-binding factor A [Escherichia coli 2.4168]
gi|386240943|gb|EII77862.1| ribosome-binding factor A [Escherichia coli 3.2303]
gi|386246560|gb|EII88290.1| ribosome-binding factor A [Escherichia coli 3003]
gi|386251385|gb|EII97552.1| ribosome-binding factor A [Escherichia coli TW07793]
gi|386253864|gb|EIJ03554.1| ribosome-binding factor A [Escherichia coli B41]
gi|386259478|gb|EIJ14952.1| ribosome-binding factor A [Escherichia coli 900105 (10e)]
gi|386797811|gb|AFJ30845.1| ribosome-binding factor A [Escherichia coli Xuzhou21]
gi|388334079|gb|EIL00687.1| ribosome-binding factor A [Escherichia coli O103:H25 str. CVM9340]
gi|388339173|gb|EIL05559.1| ribosome-binding factor A [Escherichia coli O111:H11 str. CVM9534]
gi|388345579|gb|EIL11349.1| ribosome-binding factor A [Escherichia coli O103:H2 str. CVM9450]
gi|388347675|gb|EIL13335.1| ribosome-binding factor A [Escherichia coli O111:H8 str. CVM9570]
gi|388356027|gb|EIL20825.1| ribosome-binding factor A [Escherichia coli O111:H11 str. CVM9545]
gi|388364274|gb|EIL28138.1| ribosome-binding factor A [Escherichia coli O111:H8 str. CVM9574]
gi|388368856|gb|EIL32477.1| ribosome-binding factor A [Escherichia coli O26:H11 str. CVM9942]
gi|388372715|gb|EIL36128.1| ribosome-binding factor A [Escherichia coli O26:H11 str. CVM10026]
gi|388387010|gb|EIL48639.1| ribosome-binding factor A [Escherichia coli KD2]
gi|388389159|gb|EIL50695.1| ribosome-binding factor A [Escherichia coli KD1]
gi|388395990|gb|EIL57124.1| ribosome-binding factor A [Escherichia coli 541-15]
gi|388405430|gb|EIL65860.1| ribosome-binding factor A [Escherichia coli 576-1]
gi|388407043|gb|EIL67419.1| ribosome-binding factor A [Escherichia coli 541-1]
gi|388407743|gb|EIL68107.1| ribosome-binding factor A [Escherichia coli 75]
gi|388413525|gb|EIL73517.1| ribosome-binding factor A [Escherichia coli HM605]
gi|388422132|gb|EIL81721.1| ribosome-binding factor A [Escherichia coli CUMT8]
gi|390638995|gb|EIN18483.1| ribosome-binding factor A [Escherichia coli FRIK1996]
gi|390640543|gb|EIN19995.1| ribosome-binding factor A [Escherichia coli FDA517]
gi|390640752|gb|EIN20197.1| ribosome-binding factor A [Escherichia coli FDA505]
gi|390658336|gb|EIN36133.1| ribosome-binding factor A [Escherichia coli FRIK1985]
gi|390658374|gb|EIN36169.1| ribosome-binding factor A [Escherichia coli 93-001]
gi|390661362|gb|EIN39020.1| ribosome-binding factor A [Escherichia coli FRIK1990]
gi|390675342|gb|EIN51493.1| ribosome-binding factor A [Escherichia coli PA3]
gi|390678665|gb|EIN54611.1| ribosome-binding factor A [Escherichia coli PA5]
gi|390682279|gb|EIN58049.1| ribosome-binding factor A [Escherichia coli PA9]
gi|390693919|gb|EIN68532.1| ribosome-binding factor A [Escherichia coli PA10]
gi|390698286|gb|EIN72671.1| ribosome-binding factor A [Escherichia coli PA14]
gi|390698942|gb|EIN73310.1| ribosome-binding factor A [Escherichia coli PA15]
gi|390712839|gb|EIN85783.1| ribosome-binding factor A [Escherichia coli PA22]
gi|390719773|gb|EIN92491.1| ribosome-binding factor A [Escherichia coli PA25]
gi|390721440|gb|EIN94135.1| ribosome-binding factor A [Escherichia coli PA24]
gi|390725452|gb|EIN97954.1| ribosome-binding factor A [Escherichia coli PA28]
gi|390739015|gb|EIO10208.1| ribosome-binding factor A [Escherichia coli PA31]
gi|390739705|gb|EIO10866.1| ribosome-binding factor A [Escherichia coli PA32]
gi|390743148|gb|EIO14133.1| ribosome-binding factor A [Escherichia coli PA33]
gi|390756810|gb|EIO26311.1| ribosome-binding factor A [Escherichia coli PA40]
gi|390763752|gb|EIO32979.1| ribosome-binding factor A [Escherichia coli PA39]
gi|390764923|gb|EIO34113.1| ribosome-binding factor A [Escherichia coli PA41]
gi|390766509|gb|EIO35628.1| ribosome-binding factor A [Escherichia coli PA42]
gi|390780646|gb|EIO48346.1| ribosome-binding factor A [Escherichia coli TW06591]
gi|390787482|gb|EIO54967.1| ribosome-binding factor A [Escherichia coli TW07945]
gi|390789241|gb|EIO56706.1| ribosome-binding factor A [Escherichia coli TW10246]
gi|390794745|gb|EIO62035.1| ribosome-binding factor A [Escherichia coli TW11039]
gi|390802498|gb|EIO69534.1| ribosome-binding factor A [Escherichia coli TW09098]
gi|390805761|gb|EIO72697.1| ribosome-binding factor A [Escherichia coli TW09109]
gi|390814439|gb|EIO81003.1| ribosome-binding factor A [Escherichia coli TW10119]
gi|390823899|gb|EIO89914.1| ribosome-binding factor A [Escherichia coli EC4203]
gi|390825896|gb|EIO91782.1| ribosome-binding factor A [Escherichia coli TW09195]
gi|390828773|gb|EIO94410.1| ribosome-binding factor A [Escherichia coli EC4196]
gi|390843274|gb|EIP07080.1| ribosome-binding factor A [Escherichia coli TW14313]
gi|390844097|gb|EIP07859.1| ribosome-binding factor A [Escherichia coli TW14301]
gi|390848833|gb|EIP12286.1| ribosome-binding factor A [Escherichia coli EC4421]
gi|390859166|gb|EIP21520.1| ribosome-binding factor A [Escherichia coli EC4422]
gi|390863726|gb|EIP25857.1| ribosome-binding factor A [Escherichia coli EC4013]
gi|390868446|gb|EIP30197.1| ribosome-binding factor A [Escherichia coli EC4402]
gi|390876476|gb|EIP37461.1| ribosome-binding factor A [Escherichia coli EC4439]
gi|390881897|gb|EIP42449.1| ribosome-binding factor A [Escherichia coli EC4436]
gi|390891761|gb|EIP51383.1| ribosome-binding factor A [Escherichia coli EC4437]
gi|390893625|gb|EIP53165.1| ribosome-binding factor A [Escherichia coli EC4448]
gi|390898736|gb|EIP57997.1| ribosome-binding factor A [Escherichia coli EC1738]
gi|390907135|gb|EIP66004.1| ribosome-binding factor A [Escherichia coli EC1734]
gi|390917182|gb|EIP75615.1| ribosome-binding factor A [Escherichia coli EC1863]
gi|390918186|gb|EIP76597.1| ribosome-binding factor A [Escherichia coli EC1845]
gi|391246545|gb|EIQ05806.1| ribosome-binding factor A [Shigella flexneri 2850-71]
gi|391247612|gb|EIQ06859.1| ribosome-binding factor A [Shigella flexneri K-1770]
gi|391248090|gb|EIQ07334.1| ribosome-binding factor A [Shigella flexneri CCH060]
gi|391259375|gb|EIQ18449.1| ribosome-binding factor A [Shigella flexneri K-315]
gi|391263834|gb|EIQ22834.1| ribosome-binding factor A [Shigella flexneri K-404]
gi|391267309|gb|EIQ26246.1| ribosome-binding factor A [Shigella boydii 965-58]
gi|391274981|gb|EIQ33780.1| ribosome-binding factor A [Shigella boydii 4444-74]
gi|391278595|gb|EIQ37296.1| ribosome-binding factor A [Shigella sonnei 3226-85]
gi|391282946|gb|EIQ41575.1| ribosome-binding factor A [Shigella sonnei 3233-85]
gi|391292504|gb|EIQ50825.1| ribosome-binding factor A [Shigella sonnei 4822-66]
gi|391298877|gb|EIQ56864.1| ribosome-binding factor A [Shigella dysenteriae 225-75]
gi|391303213|gb|EIQ61054.1| ribosome-binding factor A [Escherichia coli EPECa12]
gi|391310962|gb|EIQ68612.1| ribosome-binding factor A [Escherichia coli EPEC C342-62]
gi|391311593|gb|EIQ69227.1| ribosome-binding factor A [Shigella flexneri 1235-66]
gi|394380399|gb|EJE58143.1| ribosome-binding factor A [Escherichia coli O26:H11 str. CVM10224]
gi|394389035|gb|EJE66227.1| ribosome-binding factor A [Escherichia coli O111:H8 str. CVM9602]
gi|394395616|gb|EJE72043.1| ribosome-binding factor A [Escherichia coli O111:H8 str. CVM9634]
gi|394400986|gb|EJE76847.1| ribosome-binding factor A [Escherichia coli O26:H11 str. CVM10021]
gi|394417863|gb|EJE91575.1| ribosome-binding factor A [Escherichia coli O111:H11 str. CVM9553]
gi|394420594|gb|EJE94116.1| ribosome-binding factor A [Escherichia coli O26:H11 str. CVM9952]
gi|394423903|gb|EJE97114.1| ribosome-binding factor A [Escherichia coli O111:H11 str. CVM9455]
gi|394432973|gb|EJF05036.1| ribosome-binding factor A [Escherichia coli O26:H11 str. CVM10030]
gi|397783903|gb|EJK94760.1| ribosome-binding factor A [Escherichia coli STEC_O31]
gi|397895272|gb|EJL11704.1| ribosome-binding factor A [Shigella flexneri 6603-63]
gi|397896318|gb|EJL12737.1| ribosome-binding factor A [Shigella sonnei str. Moseley]
gi|404290268|gb|EEH71978.2| ribosome-binding factor A [Escherichia sp. 1_1_43]
gi|404336688|gb|EJZ63147.1| ribosome-binding factor A [Shigella flexneri 1485-80]
gi|406775923|gb|AFS55347.1| ribosome-binding factor A [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407052497|gb|AFS72548.1| ribosome-binding factor A [Escherichia coli O104:H4 str.
2011C-3493]
gi|407067178|gb|AFS88225.1| ribosome-binding factor A [Escherichia coli O104:H4 str.
2009EL-2071]
gi|408063100|gb|EKG97599.1| ribosome-binding factor A [Escherichia coli PA7]
gi|408065315|gb|EKG99790.1| ribosome-binding factor A [Escherichia coli FRIK920]
gi|408067679|gb|EKH02109.1| ribosome-binding factor A [Escherichia coli PA34]
gi|408077574|gb|EKH11773.1| ribosome-binding factor A [Escherichia coli FDA506]
gi|408081034|gb|EKH15068.1| ribosome-binding factor A [Escherichia coli FDA507]
gi|408089602|gb|EKH22906.1| ribosome-binding factor A [Escherichia coli FDA504]
gi|408095809|gb|EKH28773.1| ribosome-binding factor A [Escherichia coli FRIK1999]
gi|408102303|gb|EKH34718.1| ribosome-binding factor A [Escherichia coli FRIK1997]
gi|408106715|gb|EKH38808.1| ribosome-binding factor A [Escherichia coli NE1487]
gi|408113455|gb|EKH45045.1| ribosome-binding factor A [Escherichia coli NE037]
gi|408119574|gb|EKH50634.1| ribosome-binding factor A [Escherichia coli FRIK2001]
gi|408125786|gb|EKH56376.1| ribosome-binding factor A [Escherichia coli PA4]
gi|408135753|gb|EKH65523.1| ribosome-binding factor A [Escherichia coli PA23]
gi|408138399|gb|EKH68068.1| ribosome-binding factor A [Escherichia coli PA49]
gi|408144802|gb|EKH74016.1| ribosome-binding factor A [Escherichia coli PA45]
gi|408153103|gb|EKH81507.1| ribosome-binding factor A [Escherichia coli TT12B]
gi|408158207|gb|EKH86331.1| ribosome-binding factor A [Escherichia coli MA6]
gi|408162188|gb|EKH90103.1| ribosome-binding factor A [Escherichia coli 5905]
gi|408171463|gb|EKH98578.1| ribosome-binding factor A [Escherichia coli CB7326]
gi|408178226|gb|EKI04947.1| ribosome-binding factor A [Escherichia coli EC96038]
gi|408181509|gb|EKI08064.1| ribosome-binding factor A [Escherichia coli 5412]
gi|408191016|gb|EKI16636.1| ribosome-binding factor A [Escherichia coli TW15901]
gi|408199145|gb|EKI24354.1| ribosome-binding factor A [Escherichia coli ARS4.2123]
gi|408199751|gb|EKI24941.1| ribosome-binding factor A [Escherichia coli TW00353]
gi|408210933|gb|EKI35489.1| ribosome-binding factor A [Escherichia coli 3006]
gi|408211513|gb|EKI36059.1| ribosome-binding factor A [Escherichia coli 07798]
gi|408214951|gb|EKI39357.1| ribosome-binding factor A [Escherichia coli PA38]
gi|408225132|gb|EKI48821.1| ribosome-binding factor A [Escherichia coli EC1735]
gi|408226337|gb|EKI49984.1| ribosome-binding factor A [Escherichia coli N1]
gi|408236333|gb|EKI59237.1| ribosome-binding factor A [Escherichia coli EC1736]
gi|408240061|gb|EKI62774.1| ribosome-binding factor A [Escherichia coli EC1737]
gi|408244575|gb|EKI66995.1| ribosome-binding factor A [Escherichia coli EC1846]
gi|408253330|gb|EKI74928.1| ribosome-binding factor A [Escherichia coli EC1847]
gi|408257238|gb|EKI78561.1| ribosome-binding factor A [Escherichia coli EC1848]
gi|408263798|gb|EKI84626.1| ribosome-binding factor A [Escherichia coli EC1849]
gi|408272379|gb|EKI92469.1| ribosome-binding factor A [Escherichia coli EC1850]
gi|408275383|gb|EKI95345.1| ribosome-binding factor A [Escherichia coli EC1856]
gi|408283654|gb|EKJ02802.1| ribosome-binding factor A [Escherichia coli EC1862]
gi|408289644|gb|EKJ08400.1| ribosome-binding factor A [Escherichia coli EC1864]
gi|408294584|gb|EKJ12966.1| ribosome-binding factor A [Escherichia coli EC1865]
gi|408305497|gb|EKJ22890.1| ribosome-binding factor A [Escherichia coli EC1868]
gi|408306060|gb|EKJ23437.1| ribosome-binding factor A [Escherichia coli EC1866]
gi|408316939|gb|EKJ33189.1| ribosome-binding factor A [Escherichia coli EC1869]
gi|408322539|gb|EKJ38518.1| ribosome-binding factor A [Escherichia coli EC1870]
gi|408324836|gb|EKJ40757.1| ribosome-binding factor A [Escherichia coli NE098]
gi|408335007|gb|EKJ49872.1| ribosome-binding factor A [Escherichia coli FRIK523]
gi|408341775|gb|EKJ56213.1| ribosome-binding factor A [Escherichia coli 0.1288]
gi|408344344|gb|EKJ58714.1| ribosome-binding factor A [Escherichia coli 0.1304]
gi|408459940|gb|EKJ83720.1| ribosome-binding factor A [Escherichia coli AD30]
gi|408547168|gb|EKK24567.1| ribosome-binding factor A [Escherichia coli 5.2239]
gi|408547207|gb|EKK24605.1| ribosome-binding factor A [Escherichia coli 3.4870]
gi|408548623|gb|EKK26005.1| ribosome-binding factor A [Escherichia coli 6.0172]
gi|408565280|gb|EKK41367.1| ribosome-binding factor A [Escherichia coli 8.0566]
gi|408565588|gb|EKK41671.1| ribosome-binding factor A [Escherichia coli 8.0586]
gi|408566611|gb|EKK42678.1| ribosome-binding factor A [Escherichia coli 8.0569]
gi|408577369|gb|EKK52944.1| ribosome-binding factor A [Escherichia coli 10.0833]
gi|408579637|gb|EKK55089.1| ribosome-binding factor A [Escherichia coli 8.2524]
gi|408589516|gb|EKK64026.1| ribosome-binding factor A [Escherichia coli 10.0869]
gi|408595040|gb|EKK69308.1| ribosome-binding factor A [Escherichia coli 88.0221]
gi|408599738|gb|EKK73627.1| ribosome-binding factor A [Escherichia coli 8.0416]
gi|408610445|gb|EKK83816.1| ribosome-binding factor A [Escherichia coli 10.0821]
gi|412964552|emb|CCK48481.1| ribosome-binding factor A [Escherichia coli chi7122]
gi|412971140|emb|CCJ45795.1| ribosome-binding factor A [Escherichia coli]
gi|421942702|gb|EKU00025.1| ribosome-binding factor A [Escherichia coli O111:H8 str.
CFSAN001632]
gi|421947478|gb|EKU04550.1| ribosome-binding factor A [Escherichia coli O26:H11 str.
CFSAN001629]
gi|421948972|gb|EKU05969.1| ribosome-binding factor A [Escherichia coli O111:H11 str.
CFSAN001630]
gi|427202533|gb|EKV72857.1| ribosome-binding factor A [Escherichia coli 88.1042]
gi|427203885|gb|EKV74181.1| ribosome-binding factor A [Escherichia coli 89.0511]
gi|427206443|gb|EKV76655.1| ribosome-binding factor A [Escherichia coli 88.1467]
gi|427218847|gb|EKV87827.1| ribosome-binding factor A [Escherichia coli 90.0091]
gi|427222447|gb|EKV91230.1| ribosome-binding factor A [Escherichia coli 90.2281]
gi|427225739|gb|EKV94364.1| ribosome-binding factor A [Escherichia coli 90.0039]
gi|427239649|gb|EKW07127.1| ribosome-binding factor A [Escherichia coli 93.0056]
gi|427240033|gb|EKW07500.1| ribosome-binding factor A [Escherichia coli 93.0055]
gi|427243906|gb|EKW11254.1| ribosome-binding factor A [Escherichia coli 94.0618]
gi|427258371|gb|EKW24461.1| ribosome-binding factor A [Escherichia coli 95.0183]
gi|427259264|gb|EKW25323.1| ribosome-binding factor A [Escherichia coli 95.0943]
gi|427261886|gb|EKW27802.1| ribosome-binding factor A [Escherichia coli 95.1288]
gi|427274629|gb|EKW39277.1| ribosome-binding factor A [Escherichia coli 96.0428]
gi|427277188|gb|EKW41730.1| ribosome-binding factor A [Escherichia coli 96.0427]
gi|427281517|gb|EKW45827.1| ribosome-binding factor A [Escherichia coli 96.0939]
gi|427289943|gb|EKW53442.1| ribosome-binding factor A [Escherichia coli 96.0932]
gi|427297029|gb|EKW60073.1| ribosome-binding factor A [Escherichia coli 96.0107]
gi|427298782|gb|EKW61776.1| ribosome-binding factor A [Escherichia coli 97.0003]
gi|427309753|gb|EKW72048.1| ribosome-binding factor A [Escherichia coli 97.1742]
gi|427312946|gb|EKW75082.1| ribosome-binding factor A [Escherichia coli 97.0007]
gi|427317272|gb|EKW79178.1| ribosome-binding factor A [Escherichia coli 99.0672]
gi|427326124|gb|EKW87550.1| ribosome-binding factor A [Escherichia coli 99.0678]
gi|427327498|gb|EKW88885.1| ribosome-binding factor A [Escherichia coli 99.0713]
gi|429251921|gb|EKY36483.1| ribosome-binding factor A [Escherichia coli 96.0109]
gi|429253377|gb|EKY37865.1| ribosome-binding factor A [Escherichia coli 97.0010]
gi|429346579|gb|EKY83358.1| ribosome-binding factor A [Escherichia coli O104:H4 str. 11-02092]
gi|429356558|gb|EKY93233.1| ribosome-binding factor A [Escherichia coli O104:H4 str.
11-02033-1]
gi|429357433|gb|EKY94106.1| ribosome-binding factor A [Escherichia coli O104:H4 str. 11-02030]
gi|429372725|gb|EKZ09274.1| ribosome-binding factor A [Escherichia coli O104:H4 str. 11-02093]
gi|429374666|gb|EKZ11205.1| ribosome-binding factor A [Escherichia coli O104:H4 str. 11-02281]
gi|429378348|gb|EKZ14862.1| ribosome-binding factor A [Escherichia coli O104:H4 str. 11-02318]
gi|429388528|gb|EKZ24953.1| ribosome-binding factor A [Escherichia coli O104:H4 str. 11-02913]
gi|429391297|gb|EKZ27701.1| ribosome-binding factor A [Escherichia coli O104:H4 str. 11-03439]
gi|429392306|gb|EKZ28707.1| ribosome-binding factor A [Escherichia coli O104:H4 str. 11-03943]
gi|429402795|gb|EKZ39085.1| ribosome-binding factor A [Escherichia coli O104:H4 str. 11-04080]
gi|429403991|gb|EKZ40271.1| ribosome-binding factor A [Escherichia coli O104:H4 str. Ec11-9990]
gi|429407654|gb|EKZ43905.1| ribosome-binding factor A [Escherichia coli O104:H4 str. Ec11-9450]
gi|429415101|gb|EKZ51271.1| ribosome-binding factor A [Escherichia coli O104:H4 str. Ec11-4984]
gi|429418555|gb|EKZ54698.1| ribosome-binding factor A [Escherichia coli O104:H4 str. Ec11-4986]
gi|429424822|gb|EKZ60920.1| ribosome-binding factor A [Escherichia coli O104:H4 str. Ec11-4987]
gi|429429012|gb|EKZ65083.1| ribosome-binding factor A [Escherichia coli O104:H4 str. Ec11-4988]
gi|429433675|gb|EKZ69706.1| ribosome-binding factor A [Escherichia coli O104:H4 str. Ec11-5603]
gi|429435219|gb|EKZ71238.1| ribosome-binding factor A [Escherichia coli O104:H4 str. Ec11-6006]
gi|429440961|gb|EKZ76935.1| ribosome-binding factor A [Escherichia coli O104:H4 str. Ec11-5604]
gi|429445899|gb|EKZ81838.1| ribosome-binding factor A [Escherichia coli O104:H4 str. Ec12-0465]
gi|429455664|gb|EKZ91519.1| ribosome-binding factor A [Escherichia coli O104:H4 str. Ec12-0466]
gi|429459379|gb|EKZ95198.1| ribosome-binding factor A [Escherichia coli O104:H4 str. Ec11-9941]
gi|430873403|gb|ELB96977.1| ribosome-binding factor A [Escherichia coli KTE2]
gi|430874662|gb|ELB98218.1| ribosome-binding factor A [Escherichia coli KTE4]
gi|430884182|gb|ELC07153.1| ribosome-binding factor A [Escherichia coli KTE5]
gi|430891965|gb|ELC14486.1| ribosome-binding factor A [Escherichia coli KTE10]
gi|430893929|gb|ELC16231.1| ribosome-binding factor A [Escherichia coli KTE11]
gi|430896469|gb|ELC18704.1| ribosome-binding factor A [Escherichia coli KTE12]
gi|430904400|gb|ELC26109.1| ribosome-binding factor A [Escherichia coli KTE16]
gi|430905959|gb|ELC27567.1| ribosome-binding factor A [Escherichia coli KTE15]
gi|430913728|gb|ELC34849.1| ribosome-binding factor A [Escherichia coli KTE25]
gi|430915439|gb|ELC36518.1| ribosome-binding factor A [Escherichia coli KTE21]
gi|430923936|gb|ELC44669.1| ribosome-binding factor A [Escherichia coli KTE26]
gi|430928249|gb|ELC48800.1| ribosome-binding factor A [Escherichia coli KTE28]
gi|430933923|gb|ELC54314.1| ribosome-binding factor A [Escherichia coli KTE39]
gi|430937084|gb|ELC57346.1| ribosome-binding factor A [Escherichia coli KTE44]
gi|430942892|gb|ELC63023.1| ribosome-binding factor A [Escherichia coli KTE178]
gi|430951571|gb|ELC70791.1| ribosome-binding factor A [Escherichia coli KTE187]
gi|430952472|gb|ELC71536.1| ribosome-binding factor A [Escherichia coli KTE181]
gi|430961209|gb|ELC79256.1| ribosome-binding factor A [Escherichia coli KTE188]
gi|430964864|gb|ELC82310.1| ribosome-binding factor A [Escherichia coli KTE189]
gi|430971751|gb|ELC88760.1| ribosome-binding factor A [Escherichia coli KTE191]
gi|430977843|gb|ELC94666.1| ribosome-binding factor A [Escherichia coli KTE193]
gi|430980509|gb|ELC97269.1| ribosome-binding factor A [Escherichia coli KTE201]
gi|430986445|gb|ELD03016.1| ribosome-binding factor A [Escherichia coli KTE204]
gi|430991974|gb|ELD08373.1| ribosome-binding factor A [Escherichia coli KTE205]
gi|430996305|gb|ELD12591.1| ribosome-binding factor A [Escherichia coli KTE206]
gi|431002736|gb|ELD18243.1| ribosome-binding factor A [Escherichia coli KTE208]
gi|431005005|gb|ELD20214.1| ribosome-binding factor A [Escherichia coli KTE210]
gi|431014624|gb|ELD28332.1| ribosome-binding factor A [Escherichia coli KTE212]
gi|431019002|gb|ELD32432.1| ribosome-binding factor A [Escherichia coli KTE213]
gi|431021852|gb|ELD35173.1| ribosome-binding factor A [Escherichia coli KTE214]
gi|431026649|gb|ELD39720.1| ribosome-binding factor A [Escherichia coli KTE216]
gi|431036190|gb|ELD47566.1| ribosome-binding factor A [Escherichia coli KTE220]
gi|431039173|gb|ELD50059.1| ribosome-binding factor A [Escherichia coli KTE224]
gi|431048608|gb|ELD58584.1| ribosome-binding factor A [Escherichia coli KTE228]
gi|431049154|gb|ELD59118.1| ribosome-binding factor A [Escherichia coli KTE230]
gi|431058593|gb|ELD67986.1| ribosome-binding factor A [Escherichia coli KTE234]
gi|431060986|gb|ELD70306.1| ribosome-binding factor A [Escherichia coli KTE233]
gi|431067386|gb|ELD75991.1| ribosome-binding factor A [Escherichia coli KTE235]
gi|431072253|gb|ELD80005.1| ribosome-binding factor A [Escherichia coli KTE236]
gi|431078007|gb|ELD85066.1| ribosome-binding factor A [Escherichia coli KTE237]
gi|431082590|gb|ELD88904.1| ribosome-binding factor A [Escherichia coli KTE47]
gi|431089157|gb|ELD94981.1| ribosome-binding factor A [Escherichia coli KTE49]
gi|431091065|gb|ELD96815.1| ribosome-binding factor A [Escherichia coli KTE51]
gi|431098293|gb|ELE03616.1| ribosome-binding factor A [Escherichia coli KTE53]
gi|431105953|gb|ELE10287.1| ribosome-binding factor A [Escherichia coli KTE55]
gi|431113272|gb|ELE16942.1| ribosome-binding factor A [Escherichia coli KTE56]
gi|431118912|gb|ELE21931.1| ribosome-binding factor A [Escherichia coli KTE58]
gi|431121914|gb|ELE24783.1| ribosome-binding factor A [Escherichia coli KTE57]
gi|431126772|gb|ELE29119.1| ribosome-binding factor A [Escherichia coli KTE60]
gi|431129292|gb|ELE31468.1| ribosome-binding factor A [Escherichia coli KTE62]
gi|431136310|gb|ELE38179.1| ribosome-binding factor A [Escherichia coli KTE67]
gi|431138306|gb|ELE40142.1| ribosome-binding factor A [Escherichia coli KTE66]
gi|431147363|gb|ELE48786.1| ribosome-binding factor A [Escherichia coli KTE72]
gi|431152174|gb|ELE53132.1| ribosome-binding factor A [Escherichia coli KTE75]
gi|431157141|gb|ELE57795.1| ribosome-binding factor A [Escherichia coli KTE76]
gi|431161134|gb|ELE61619.1| ribosome-binding factor A [Escherichia coli KTE77]
gi|431168176|gb|ELE68430.1| ribosome-binding factor A [Escherichia coli KTE80]
gi|431169118|gb|ELE69347.1| ribosome-binding factor A [Escherichia coli KTE81]
gi|431178474|gb|ELE78383.1| ribosome-binding factor A [Escherichia coli KTE83]
gi|431179195|gb|ELE79102.1| ribosome-binding factor A [Escherichia coli KTE86]
gi|431188496|gb|ELE87938.1| ribosome-binding factor A [Escherichia coli KTE87]
gi|431188868|gb|ELE88309.1| ribosome-binding factor A [Escherichia coli KTE93]
gi|431197459|gb|ELE96308.1| ribosome-binding factor A [Escherichia coli KTE111]
gi|431198417|gb|ELE97240.1| ribosome-binding factor A [Escherichia coli KTE116]
gi|431208496|gb|ELF06709.1| ribosome-binding factor A [Escherichia coli KTE119]
gi|431211976|gb|ELF09927.1| ribosome-binding factor A [Escherichia coli KTE142]
gi|431218067|gb|ELF15551.1| ribosome-binding factor A [Escherichia coli KTE143]
gi|431219977|gb|ELF17365.1| ribosome-binding factor A [Escherichia coli KTE156]
gi|431232117|gb|ELF27793.1| ribosome-binding factor A [Escherichia coli KTE162]
gi|431236494|gb|ELF31700.1| ribosome-binding factor A [Escherichia coli KTE161]
gi|431241172|gb|ELF35619.1| ribosome-binding factor A [Escherichia coli KTE169]
gi|431241694|gb|ELF36130.1| ribosome-binding factor A [Escherichia coli KTE171]
gi|431253879|gb|ELF47357.1| ribosome-binding factor A [Escherichia coli KTE8]
gi|431255947|gb|ELF49025.1| ribosome-binding factor A [Escherichia coli KTE6]
gi|431261127|gb|ELF53218.1| ribosome-binding factor A [Escherichia coli KTE9]
gi|431263575|gb|ELF55561.1| ribosome-binding factor A [Escherichia coli KTE17]
gi|431271820|gb|ELF62939.1| ribosome-binding factor A [Escherichia coli KTE18]
gi|431272835|gb|ELF63934.1| ribosome-binding factor A [Escherichia coli KTE45]
gi|431280118|gb|ELF71047.1| ribosome-binding factor A [Escherichia coli KTE42]
gi|431282069|gb|ELF72967.1| ribosome-binding factor A [Escherichia coli KTE23]
gi|431290266|gb|ELF80991.1| ribosome-binding factor A [Escherichia coli KTE43]
gi|431300379|gb|ELF89932.1| ribosome-binding factor A [Escherichia coli KTE22]
gi|431306320|gb|ELF94633.1| ribosome-binding factor A [Escherichia coli KTE46]
gi|431308113|gb|ELF96401.1| ribosome-binding factor A [Escherichia coli KTE48]
gi|431316419|gb|ELG04229.1| ribosome-binding factor A [Escherichia coli KTE54]
gi|431322706|gb|ELG10291.1| ribosome-binding factor A [Escherichia coli KTE50]
gi|431325427|gb|ELG12815.1| ribosome-binding factor A [Escherichia coli KTE59]
gi|431328299|gb|ELG15619.1| ribosome-binding factor A [Escherichia coli KTE63]
gi|431336177|gb|ELG23306.1| ribosome-binding factor A [Escherichia coli KTE65]
gi|431338464|gb|ELG25551.1| ribosome-binding factor A [Escherichia coli KTE78]
gi|431346684|gb|ELG33588.1| ribosome-binding factor A [Escherichia coli KTE84]
gi|431350049|gb|ELG36877.1| ribosome-binding factor A [Escherichia coli KTE79]
gi|431353873|gb|ELG40626.1| ribosome-binding factor A [Escherichia coli KTE91]
gi|431360641|gb|ELG47243.1| ribosome-binding factor A [Escherichia coli KTE101]
gi|431361944|gb|ELG48523.1| ribosome-binding factor A [Escherichia coli KTE115]
gi|431366401|gb|ELG52899.1| ribosome-binding factor A [Escherichia coli KTE118]
gi|431378592|gb|ELG63583.1| ribosome-binding factor A [Escherichia coli KTE123]
gi|431382878|gb|ELG67021.1| ribosome-binding factor A [Escherichia coli KTE136]
gi|431383660|gb|ELG67784.1| ribosome-binding factor A [Escherichia coli KTE135]
gi|431387610|gb|ELG71434.1| ribosome-binding factor A [Escherichia coli KTE140]
gi|431393728|gb|ELG77292.1| ribosome-binding factor A [Escherichia coli KTE141]
gi|431398728|gb|ELG82148.1| ribosome-binding factor A [Escherichia coli KTE144]
gi|431402838|gb|ELG86143.1| ribosome-binding factor A [Escherichia coli KTE146]
gi|431409602|gb|ELG92777.1| ribosome-binding factor A [Escherichia coli KTE147]
gi|431414930|gb|ELG97481.1| ribosome-binding factor A [Escherichia coli KTE158]
gi|431418345|gb|ELH00749.1| ribosome-binding factor A [Escherichia coli KTE154]
gi|431424172|gb|ELH06269.1| ribosome-binding factor A [Escherichia coli KTE192]
gi|431429266|gb|ELH11196.1| ribosome-binding factor A [Escherichia coli KTE194]
gi|431431671|gb|ELH13446.1| ribosome-binding factor A [Escherichia coli KTE165]
gi|431436830|gb|ELH18344.1| ribosome-binding factor A [Escherichia coli KTE190]
gi|431437213|gb|ELH18726.1| ribosome-binding factor A [Escherichia coli KTE173]
gi|431442112|gb|ELH23219.1| ribosome-binding factor A [Escherichia coli KTE175]
gi|431451370|gb|ELH31846.1| ribosome-binding factor A [Escherichia coli KTE184]
gi|431455867|gb|ELH36222.1| ribosome-binding factor A [Escherichia coli KTE196]
gi|431461467|gb|ELH41735.1| ribosome-binding factor A [Escherichia coli KTE183]
gi|431465400|gb|ELH45510.1| ribosome-binding factor A [Escherichia coli KTE197]
gi|431468947|gb|ELH48880.1| ribosome-binding factor A [Escherichia coli KTE203]
gi|431472203|gb|ELH52095.1| ribosome-binding factor A [Escherichia coli KTE202]
gi|431479875|gb|ELH59608.1| ribosome-binding factor A [Escherichia coli KTE207]
gi|431487443|gb|ELH67088.1| ribosome-binding factor A [Escherichia coli KTE209]
gi|431489868|gb|ELH69493.1| ribosome-binding factor A [Escherichia coli KTE211]
gi|431492544|gb|ELH72145.1| ribosome-binding factor A [Escherichia coli KTE217]
gi|431496279|gb|ELH75863.1| ribosome-binding factor A [Escherichia coli KTE215]
gi|431503732|gb|ELH82467.1| ribosome-binding factor A [Escherichia coli KTE218]
gi|431505850|gb|ELH84455.1| ribosome-binding factor A [Escherichia coli KTE223]
gi|431511448|gb|ELH89580.1| ribosome-binding factor A [Escherichia coli KTE227]
gi|431522403|gb|ELH99638.1| ribosome-binding factor A [Escherichia coli KTE229]
gi|431527365|gb|ELI04081.1| ribosome-binding factor A [Escherichia coli KTE104]
gi|431528638|gb|ELI05345.1| ribosome-binding factor A [Escherichia coli KTE105]
gi|431532438|gb|ELI08994.1| ribosome-binding factor A [Escherichia coli KTE106]
gi|431541768|gb|ELI17207.1| ribosome-binding factor A [Escherichia coli KTE109]
gi|431547801|gb|ELI22096.1| ribosome-binding factor A [Escherichia coli KTE112]
gi|431549417|gb|ELI23498.1| ribosome-binding factor A [Escherichia coli KTE113]
gi|431554458|gb|ELI28339.1| ribosome-binding factor A [Escherichia coli KTE117]
gi|431562994|gb|ELI36237.1| ribosome-binding factor A [Escherichia coli KTE120]
gi|431566984|gb|ELI39999.1| ribosome-binding factor A [Escherichia coli KTE124]
gi|431567685|gb|ELI40678.1| ribosome-binding factor A [Escherichia coli KTE122]
gi|431579324|gb|ELI51908.1| ribosome-binding factor A [Escherichia coli KTE125]
gi|431580545|gb|ELI53104.1| ribosome-binding factor A [Escherichia coli KTE128]
gi|431584825|gb|ELI56800.1| ribosome-binding factor A [Escherichia coli KTE129]
gi|431594563|gb|ELI64843.1| ribosome-binding factor A [Escherichia coli KTE131]
gi|431598637|gb|ELI68425.1| ribosome-binding factor A [Escherichia coli KTE133]
gi|431602733|gb|ELI72163.1| ribosome-binding factor A [Escherichia coli KTE137]
gi|431608207|gb|ELI77555.1| ribosome-binding factor A [Escherichia coli KTE138]
gi|431613566|gb|ELI82762.1| ribosome-binding factor A [Escherichia coli KTE139]
gi|431617040|gb|ELI86062.1| ribosome-binding factor A [Escherichia coli KTE145]
gi|431625023|gb|ELI93617.1| ribosome-binding factor A [Escherichia coli KTE148]
gi|431626277|gb|ELI94829.1| ribosome-binding factor A [Escherichia coli KTE150]
gi|431632251|gb|ELJ00554.1| ribosome-binding factor A [Escherichia coli KTE153]
gi|431639770|gb|ELJ07619.1| ribosome-binding factor A [Escherichia coli KTE157]
gi|431641614|gb|ELJ09349.1| ribosome-binding factor A [Escherichia coli KTE160]
gi|431644467|gb|ELJ12129.1| ribosome-binding factor A [Escherichia coli KTE163]
gi|431654439|gb|ELJ21494.1| ribosome-binding factor A [Escherichia coli KTE166]
gi|431657181|gb|ELJ24148.1| ribosome-binding factor A [Escherichia coli KTE167]
gi|431658988|gb|ELJ25895.1| ribosome-binding factor A [Escherichia coli KTE168]
gi|431668161|gb|ELJ34693.1| ribosome-binding factor A [Escherichia coli KTE174]
gi|431671459|gb|ELJ37740.1| ribosome-binding factor A [Escherichia coli KTE176]
gi|431675065|gb|ELJ41211.1| ribosome-binding factor A [Escherichia coli KTE177]
gi|431684924|gb|ELJ50529.1| ribosome-binding factor A [Escherichia coli KTE179]
gi|431686414|gb|ELJ51980.1| ribosome-binding factor A [Escherichia coli KTE180]
gi|431689831|gb|ELJ55326.1| ribosome-binding factor A [Escherichia coli KTE232]
gi|431698548|gb|ELJ63575.1| ribosome-binding factor A [Escherichia coli KTE82]
gi|431703145|gb|ELJ67834.1| ribosome-binding factor A [Escherichia coli KTE88]
gi|431703502|gb|ELJ68189.1| ribosome-binding factor A [Escherichia coli KTE85]
gi|431713921|gb|ELJ78129.1| ribosome-binding factor A [Escherichia coli KTE90]
gi|431717313|gb|ELJ81412.1| ribosome-binding factor A [Escherichia coli KTE95]
gi|431718453|gb|ELJ82527.1| ribosome-binding factor A [Escherichia coli KTE94]
gi|431728652|gb|ELJ92325.1| ribosome-binding factor A [Escherichia coli KTE97]
gi|431732691|gb|ELJ96141.1| ribosome-binding factor A [Escherichia coli KTE99]
gi|432346184|gb|ELL40674.1| ribosome-binding factor A [Escherichia coli J96]
gi|441607155|emb|CCP96396.1| Ribosome-binding factor A [Escherichia coli O10:K5(L):H4 str. ATCC
23506]
gi|441654396|emb|CCQ00945.1| Ribosome-binding factor A [Escherichia coli O5:K4(L):H4 str. ATCC
23502]
gi|441713855|emb|CCQ06182.1| Ribosome-binding factor A [Escherichia coli Nissle 1917]
gi|443423749|gb|AGC88653.1| ribosome-binding factor A [Escherichia coli APEC O78]
gi|444536128|gb|ELV16160.1| ribosome-binding factor A [Escherichia coli 99.0814]
gi|444537880|gb|ELV17788.1| ribosome-binding factor A [Escherichia coli 09BKT078844]
gi|444546306|gb|ELV25059.1| ribosome-binding factor A [Escherichia coli 99.0815]
gi|444555770|gb|ELV33214.1| ribosome-binding factor A [Escherichia coli 99.0839]
gi|444556086|gb|ELV33517.1| ribosome-binding factor A [Escherichia coli 99.0816]
gi|444561134|gb|ELV38266.1| ribosome-binding factor A [Escherichia coli 99.0848]
gi|444570343|gb|ELV46874.1| ribosome-binding factor A [Escherichia coli 99.1753]
gi|444574301|gb|ELV50619.1| ribosome-binding factor A [Escherichia coli 99.1775]
gi|444577506|gb|ELV53631.1| ribosome-binding factor A [Escherichia coli 99.1793]
gi|444590771|gb|ELV66070.1| ribosome-binding factor A [Escherichia coli PA11]
gi|444591005|gb|ELV66302.1| ribosome-binding factor A [Escherichia coli ATCC 700728]
gi|444591824|gb|ELV67086.1| ribosome-binding factor A [Escherichia coli 99.1805]
gi|444604588|gb|ELV79253.1| ribosome-binding factor A [Escherichia coli PA13]
gi|444605636|gb|ELV80277.1| ribosome-binding factor A [Escherichia coli PA19]
gi|444613777|gb|ELV88027.1| ribosome-binding factor A [Escherichia coli PA2]
gi|444621455|gb|ELV95431.1| ribosome-binding factor A [Escherichia coli PA47]
gi|444622053|gb|ELV96018.1| ribosome-binding factor A [Escherichia coli PA48]
gi|444628284|gb|ELW02028.1| ribosome-binding factor A [Escherichia coli PA8]
gi|444636331|gb|ELW09732.1| ribosome-binding factor A [Escherichia coli 7.1982]
gi|444638827|gb|ELW12152.1| ribosome-binding factor A [Escherichia coli 99.1781]
gi|444643337|gb|ELW16495.1| ribosome-binding factor A [Escherichia coli 99.1762]
gi|444652795|gb|ELW25544.1| ribosome-binding factor A [Escherichia coli PA35]
gi|444658126|gb|ELW30588.1| ribosome-binding factor A [Escherichia coli 3.4880]
gi|444661236|gb|ELW33563.1| ribosome-binding factor A [Escherichia coli 95.0083]
gi|444668268|gb|ELW40290.1| ribosome-binding factor A [Escherichia coli 99.0670]
gi|449314696|gb|EMD04858.1| ribosome-binding factor A [Escherichia coli O08]
gi|449315994|gb|EMD06119.1| ribosome-binding factor A [Escherichia coli S17]
gi|449317779|gb|EMD07863.1| ribosome-binding factor A [Escherichia coli SEPT362]
Length = 133
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 69/124 (55%), Gaps = 20/124 (16%)
Query: 62 KCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSAD 121
K P+RV A+++Q+E++ +LQ + D L +TT+S VE+S D
Sbjct: 3 KEFGRPQRV---AQEMQKEIA------LILQREI-------KDPRLGMMTTVSGVEMSRD 46
Query: 122 LQVVKVYVSVFGDDRGKEVAIAGLKS---KAKYVRSQLGRRMKLRLTPEIRFIEDESFER 178
L KVYV+ F +D+ ++ AG+K+ + ++RS LG+ M+LR+ PE+ F D S
Sbjct: 47 LAYAKVYVT-FLNDKDEDAVKAGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNSLVE 105
Query: 179 GSRV 182
G R+
Sbjct: 106 GMRM 109
>gi|227890637|ref|ZP_04008442.1| ribosome-binding factor A [Lactobacillus salivarius ATCC 11741]
gi|417788095|ref|ZP_12435778.1| ribosome-binding factor A [Lactobacillus salivarius NIAS840]
gi|417810462|ref|ZP_12457141.1| ribosome-binding factor A [Lactobacillus salivarius GJ-24]
gi|418961183|ref|ZP_13513070.1| ribosome-binding factor A [Lactobacillus salivarius SMXD51]
gi|227867575|gb|EEJ74996.1| ribosome-binding factor A [Lactobacillus salivarius ATCC 11741]
gi|334308272|gb|EGL99258.1| ribosome-binding factor A [Lactobacillus salivarius NIAS840]
gi|335349258|gb|EGM50758.1| ribosome-binding factor A [Lactobacillus salivarius GJ-24]
gi|380344850|gb|EIA33196.1| ribosome-binding factor A [Lactobacillus salivarius SMXD51]
Length = 119
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 15/127 (11%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RV ++++IQRE++D+LL K ++ + + TI+ VEVS DLQ
Sbjct: 1 MAQHFRVGRLSQEIQREVNDILL--KRVRDPRVKDV------------TITGVEVSGDLQ 46
Query: 124 VVKVYVSVFGDDRGKEVAI-AGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
+Y S+ D E + GL +R +LG R+ + +TPEI+F D+S + G +
Sbjct: 47 HATIYYSILSDKASDEKKVQTGLDKATSLIRGELGHRLSIYVTPEIKFERDKSVQYGDHI 106
Query: 183 IAILDRI 189
+L ++
Sbjct: 107 DELLRKL 113
>gi|283788205|ref|YP_003368070.1| ribosome-binding factor A [Citrobacter rodentium ICC168]
gi|423141813|ref|ZP_17129451.1| ribosome-binding factor A [Salmonella enterica subsp. houtenae str.
ATCC BAA-1581]
gi|182676606|sp|A9MP37.2|RBFA_SALAR RecName: Full=Ribosome-binding factor A
gi|282951659|emb|CBG91359.1| ribosome-binding factor A [Citrobacter rodentium ICC168]
gi|379050985|gb|EHY68877.1| ribosome-binding factor A [Salmonella enterica subsp. houtenae str.
ATCC BAA-1581]
Length = 133
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 69/124 (55%), Gaps = 20/124 (16%)
Query: 62 KCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSAD 121
K P+RV A+++Q+E++ +LQ + D L +TT+S VE+S D
Sbjct: 3 KEFGRPQRV---AQEMQKEIA------IILQREI-------KDPRLGMMTTVSGVEMSRD 46
Query: 122 LQVVKVYVSVFGDDRGKEVAIAGLKS---KAKYVRSQLGRRMKLRLTPEIRFIEDESFER 178
L KVYV+ F +D+ ++ AG+K+ + ++RS LG+ M+LR+ PE+ F D S
Sbjct: 47 LAYAKVYVT-FLNDKDEDAVKAGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNSLVE 105
Query: 179 GSRV 182
G R+
Sbjct: 106 GMRM 109
>gi|182678032|ref|YP_001832178.1| ribosome-binding factor A [Beijerinckia indica subsp. indica ATCC
9039]
gi|238691234|sp|B2IIJ6.1|RBFA_BEII9 RecName: Full=Ribosome-binding factor A
gi|182633915|gb|ACB94689.1| ribosome-binding factor A [Beijerinckia indica subsp. indica ATCC
9039]
Length = 141
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 68/128 (53%), Gaps = 24/128 (18%)
Query: 65 ANPRRVKMVAKQIQRELSDML----LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSA 120
A +R+ VA+ I+ LSD+L + D VL+ V+ T+ DV +S
Sbjct: 11 APSQRMLRVAELIRHTLSDLLSRSIVNDPVLEGHVI---------------TVPDVRMSP 55
Query: 121 DLQVVKVYVSVFGDDRGKEV--AIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFER 178
DL++ +V G GK++ I L K++RS++ +R+ LR P+IRF DESF+
Sbjct: 56 DLKLATAFVMPLG---GKDINSVIEALDRHKKFLRSEIAQRIHLRFAPDIRFKADESFDY 112
Query: 179 GSRVIAIL 186
G ++ A+L
Sbjct: 113 GDKIDALL 120
>gi|298293851|ref|YP_003695790.1| ribosome-binding factor A [Starkeya novella DSM 506]
gi|296930362|gb|ADH91171.1| ribosome-binding factor A [Starkeya novella DSM 506]
Length = 141
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 56/100 (56%), Gaps = 10/100 (10%)
Query: 89 KVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKE--VAIAGLK 146
++L LP+ AL + T+ +V +S DL++ YV G GK+ AI L
Sbjct: 28 EILARGDLPDPALS-----KVMITVPEVRMSPDLKIATCYVMPLG---GKDHKAAIDALA 79
Query: 147 SKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
+ AK +R ++ RR++L+ PE+RF D SFE G R+ A+L
Sbjct: 80 TNAKPLRGEIARRVELKFVPELRFRIDTSFEEGDRIDALL 119
>gi|421616620|ref|ZP_16057623.1| ribosome-binding factor A [Pseudomonas stutzeri KOS6]
gi|409781372|gb|EKN60972.1| ribosome-binding factor A [Pseudomonas stutzeri KOS6]
Length = 129
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 69/128 (53%), Gaps = 19/128 (14%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + + Q+QREL+ ++ + + + LG L TI+ V+VS DL K++
Sbjct: 7 RTQRIGDQMQRELALLIQRE-------IKDPRLG-------LVTITGVDVSRDLSHAKIF 52
Query: 129 VSVFGDDRGKEVAIAG----LKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIA 184
+++ G D +E A+ G L A ++R QLG+ MKLR P++ F D S RG + +
Sbjct: 53 ITIMGQDDDEE-AVKGNLRILNEAAGFLRMQLGKSMKLRSVPQLHFNYDASIRRGVELSS 111
Query: 185 ILDRIKAE 192
+++R AE
Sbjct: 112 LIERAVAE 119
>gi|358637265|dbj|BAL24562.1| ribosome-binding factor A [Azoarcus sp. KH32C]
Length = 127
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 71/134 (52%), Gaps = 14/134 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + V +QI+REL++++ + + + +G T++DVE++ D KV+
Sbjct: 7 RSQRVKEQIRRELAELIRLE-------VKDPRVG-------FITLTDVEITPDYAHAKVF 52
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+ + G + GL+ + ++R +LGRR+++ PE+ F D S ERGSR+ ++D
Sbjct: 53 FTSMKGEEGLSEILTGLRRASGFLRRELGRRIRIHTIPELHFHYDASVERGSRLSRLIDE 112
Query: 189 IKAEKEAAKSKNKE 202
+ + A + + E
Sbjct: 113 VVRDDNARHTDDPE 126
>gi|229525297|ref|ZP_04414702.1| ribosome-binding factor A [Vibrio cholerae bv. albensis VL426]
gi|229338878|gb|EEO03895.1| ribosome-binding factor A [Vibrio cholerae bv. albensis VL426]
Length = 136
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 65/115 (56%), Gaps = 15/115 (13%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + VA+Q+Q+EL+ M+L +V ++ LG + TISDVEVS DL KV+
Sbjct: 11 RSQRVAQQLQKELA-MILQREV------RDSRLG-------MVTISDVEVSRDLAYAKVF 56
Query: 129 VSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
V+ ++ E + L+ +R LG++++LRLTPE+RF D + G R+
Sbjct: 57 VTFLCIGEQTPESCLEALREHEVQIRMMLGKQIRLRLTPEVRFYYDNTLVEGMRM 111
>gi|223044222|ref|ZP_03614259.1| ribosome-binding factor A [Staphylococcus capitis SK14]
gi|417907120|ref|ZP_12550896.1| ribosome-binding factor A [Staphylococcus capitis VCU116]
gi|222442372|gb|EEE48480.1| ribosome-binding factor A [Staphylococcus capitis SK14]
gi|341596751|gb|EGS39342.1| ribosome-binding factor A [Staphylococcus capitis VCU116]
Length = 116
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 46/71 (64%)
Query: 112 TISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFI 171
TI+DVE++ DL KVY++V G + + L+ +++S+LG RM+LR+ P++ F
Sbjct: 34 TITDVELTNDLSHAKVYLTVLGSKKEVDNTFKALEKAKGFIKSELGSRMRLRIIPDLTFE 93
Query: 172 EDESFERGSRV 182
DES E G+++
Sbjct: 94 YDESIEYGNKI 104
>gi|215488485|ref|YP_002330916.1| ribosome-binding factor A [Escherichia coli O127:H6 str. E2348/69]
gi|312968494|ref|ZP_07782703.1| ribosome-binding factor A [Escherichia coli 2362-75]
gi|417757526|ref|ZP_12405592.1| ribosome-binding factor A [Escherichia coli DEC2B]
gi|418998652|ref|ZP_13546237.1| ribosome-binding factor A [Escherichia coli DEC1A]
gi|419003900|ref|ZP_13551413.1| ribosome-binding factor A [Escherichia coli DEC1B]
gi|419009573|ref|ZP_13556992.1| ribosome-binding factor A [Escherichia coli DEC1C]
gi|419015155|ref|ZP_13562496.1| ribosome-binding factor A [Escherichia coli DEC1D]
gi|419020205|ref|ZP_13567505.1| ribosome-binding factor A [Escherichia coli DEC1E]
gi|419025666|ref|ZP_13572886.1| ribosome-binding factor A [Escherichia coli DEC2A]
gi|419030798|ref|ZP_13577947.1| ribosome-binding factor A [Escherichia coli DEC2C]
gi|419036440|ref|ZP_13583517.1| ribosome-binding factor A [Escherichia coli DEC2D]
gi|419041503|ref|ZP_13588522.1| ribosome-binding factor A [Escherichia coli DEC2E]
gi|254789748|sp|B7UJ62.1|RBFA_ECO27 RecName: Full=Ribosome-binding factor A
gi|215266557|emb|CAS10996.1| 30s ribosome binding factor RbfA [Escherichia coli O127:H6 str.
E2348/69]
gi|312286712|gb|EFR14623.1| ribosome-binding factor A [Escherichia coli 2362-75]
gi|377840915|gb|EHU05985.1| ribosome-binding factor A [Escherichia coli DEC1A]
gi|377841406|gb|EHU06472.1| ribosome-binding factor A [Escherichia coli DEC1C]
gi|377844573|gb|EHU09609.1| ribosome-binding factor A [Escherichia coli DEC1B]
gi|377854688|gb|EHU19565.1| ribosome-binding factor A [Escherichia coli DEC1D]
gi|377857888|gb|EHU22736.1| ribosome-binding factor A [Escherichia coli DEC1E]
gi|377861354|gb|EHU26174.1| ribosome-binding factor A [Escherichia coli DEC2A]
gi|377871821|gb|EHU36479.1| ribosome-binding factor A [Escherichia coli DEC2B]
gi|377874558|gb|EHU39185.1| ribosome-binding factor A [Escherichia coli DEC2C]
gi|377876886|gb|EHU41485.1| ribosome-binding factor A [Escherichia coli DEC2D]
gi|377887129|gb|EHU51607.1| ribosome-binding factor A [Escherichia coli DEC2E]
Length = 133
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 69/124 (55%), Gaps = 20/124 (16%)
Query: 62 KCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSAD 121
K P+RV A+++Q+E++ +LQ + D L +TT+S VE+S D
Sbjct: 3 KEFGRPQRV---AQEMQKEIA------LILQREI-------KDPRLGMMTTVSGVEMSRD 46
Query: 122 LQVVKVYVSVFGDDRGKEVAIAGLKS---KAKYVRSQLGRRMKLRLTPEIRFIEDESFER 178
L KVYV+ F +D+ ++ AG+K+ + ++RS LG+ M+LR+ PE+ F D S
Sbjct: 47 LAYAKVYVT-FLNDKDEDAVKAGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNSLVE 105
Query: 179 GSRV 182
G R+
Sbjct: 106 GMRM 109
>gi|123965361|ref|YP_001010442.1| ribosome-binding factor A [Prochlorococcus marinus str. MIT 9515]
gi|166219389|sp|A2BU74.1|RBFA_PROM5 RecName: Full=Ribosome-binding factor A
gi|123199727|gb|ABM71335.1| Ribosome-binding factor A [Prochlorococcus marinus str. MIT 9515]
Length = 132
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 70/140 (50%), Gaps = 12/140 (8%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
M N R+ V+ +++E++ +L D L D S+ +IS +EV+ DLQ
Sbjct: 1 MPNNYRIAKVSSLLKKEITLILQND------------LENDLLRSNFISISKIEVTGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K+Y+S + ++ I L Y++ LG+R+++R PE+ F +D + +G V+
Sbjct: 49 FCKIYISSAAEGNIRKEIIENLNLAKNYIKHILGQRIEMRRVPELTFKDDTALAKGLSVL 108
Query: 184 AILDRIKAEKEAAKSKNKEQ 203
+L+ + + S+ +E
Sbjct: 109 KLLEELNNKTHNQNSQVEEN 128
>gi|257094532|ref|YP_003168173.1| ribosome-binding factor A [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
gi|257047056|gb|ACV36244.1| ribosome-binding factor A [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
Length = 136
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 71/136 (52%), Gaps = 14/136 (10%)
Query: 73 VAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVF 132
+A+QI+REL++++ T+ L + +G + ++++V+VSAD KV+ S
Sbjct: 13 IAEQIRRELAELIRTE-------LRDPRVG-------MISLTEVQVSADYAHAKVFFSTL 58
Query: 133 GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRIKAE 192
+ AGL+ ++R +LG+R+ + TPE+ F+ D S E G+++ ++ A
Sbjct: 59 AGSEQLDAVYAGLQHAGGFLRRELGKRISIHATPELHFVFDASLEHGAQLSKLISEAVAI 118
Query: 193 KEAAKSKNKEQFESPD 208
E + ++ PD
Sbjct: 119 SEHSSPADQAPEADPD 134
>gi|293363356|ref|ZP_06610178.1| ribosome-binding factor A [Mycoplasma alligatoris A21JP2]
gi|292553025|gb|EFF41776.1| ribosome-binding factor A [Mycoplasma alligatoris A21JP2]
Length = 114
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 112 TISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFI 171
+ DV++SADL KV+V+ FG + K + L + A ++RS L R +K R P I F
Sbjct: 34 VVMDVKLSADLSHCKVFVN-FGSKKQK--GLESLNNSAGFIRSSLSRSLKWRKVPHIHFY 90
Query: 172 EDESFERGSRVIAILDRIKAEKE 194
DE E GS + AIL IK E E
Sbjct: 91 HDEVSEYGSNIDAILRNIKNENE 113
>gi|170765473|ref|ZP_02900284.1| ribosome-binding factor A [Escherichia albertii TW07627]
gi|170124619|gb|EDS93550.1| ribosome-binding factor A [Escherichia albertii TW07627]
Length = 133
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 69/124 (55%), Gaps = 20/124 (16%)
Query: 62 KCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSAD 121
K P+RV A+++Q+E++ +LQ + D L +TT+S VE+S D
Sbjct: 3 KEFGRPQRV---AQEMQKEIA------IILQREI-------KDPRLGMMTTVSGVEMSRD 46
Query: 122 LQVVKVYVSVFGDDRGKEVAIAGLKS---KAKYVRSQLGRRMKLRLTPEIRFIEDESFER 178
L KVYV+ F +D+ ++ AG+K+ + ++RS LG+ M+LR+ PE+ F D S
Sbjct: 47 LAYAKVYVT-FLNDKDEDAVKAGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNSLVE 105
Query: 179 GSRV 182
G R+
Sbjct: 106 GMRM 109
>gi|452995289|emb|CCQ93056.1| Ribosome-binding factor A [Clostridium ultunense Esp]
Length = 125
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 71/135 (52%), Gaps = 13/135 (9%)
Query: 68 RRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKV 127
+R+ ++++I++ +S+ L+T ++ D +S +T+I+ V+V+ DL +
Sbjct: 4 KRINRISEEIRKVVSE-LITREI------------KDPRVSPMTSITKVQVTNDLSYANI 50
Query: 128 YVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
YVSV GD KE + GL S +VR ++ R+ LR PE F DES E + +++
Sbjct: 51 YVSVLGDKEVKEETLNGLTSAKGFVRKEISNRIDLRHAPEPIFHLDESIEHSLYISKLIE 110
Query: 188 RIKAEKEAAKSKNKE 202
++ E E + E
Sbjct: 111 KVNREDEDKRGDRDE 125
>gi|422909158|ref|ZP_16943810.1| ribosome-binding factor A [Vibrio cholerae HE-09]
gi|424658513|ref|ZP_18095770.1| ribosome-binding factor A [Vibrio cholerae HE-16]
gi|341635748|gb|EGS60454.1| ribosome-binding factor A [Vibrio cholerae HE-09]
gi|408054997|gb|EKG89951.1| ribosome-binding factor A [Vibrio cholerae HE-16]
Length = 132
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 65/115 (56%), Gaps = 15/115 (13%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + VA+Q+Q+EL+ M+L +V ++ LG + TISDVEVS DL KV+
Sbjct: 7 RSQRVAQQLQKELA-MILQREV------RDSRLG-------MVTISDVEVSRDLAYAKVF 52
Query: 129 VSVFG-DDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
V+ ++ E + L+ +R LG++++LRLTPE+RF D + G R+
Sbjct: 53 VTFLCIGEQTPESCLEALREHEVQIRMMLGKQIRLRLTPEVRFYYDNTLVEGMRM 107
>gi|302389794|ref|YP_003825615.1| ribosome-binding factor A [Thermosediminibacter oceani DSM 16646]
gi|302200422|gb|ADL07992.1| ribosome-binding factor A [Thermosediminibacter oceani DSM 16646]
Length = 119
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 55/88 (62%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLR 163
D + L +++ VEVS DL+ K+++S++G++ K+ A+ G+K+ ++R +L R++L+
Sbjct: 27 DPRIQGLISVTKVEVSKDLRHAKIFLSIYGEESVKQNALEGIKNAEGFIRRELANRIRLK 86
Query: 164 LTPEIRFIEDESFERGSRVIAILDRIKA 191
P++ F D+S E G + +L I +
Sbjct: 87 FIPQLNFKLDDSIEYGIHISKLLKDINS 114
>gi|365847656|ref|ZP_09388140.1| ribosome-binding factor A [Yokenella regensburgei ATCC 43003]
gi|364571907|gb|EHM49477.1| ribosome-binding factor A [Yokenella regensburgei ATCC 43003]
Length = 133
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 69/124 (55%), Gaps = 20/124 (16%)
Query: 62 KCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSAD 121
K P+RV A+++Q+E++ +LQ + D L +TT+S VE+S D
Sbjct: 3 KEFGRPQRV---AQEMQKEIA------IILQREI-------KDPRLGMMTTVSGVEMSRD 46
Query: 122 LQVVKVYVSVFGDDRGKEVAIAGLKS---KAKYVRSQLGRRMKLRLTPEIRFIEDESFER 178
L KV+V+ F +D+ +E AG+K+ + ++RS LG+ M+LR+ PE+ F D S
Sbjct: 47 LAYAKVFVT-FLNDKDEEAVKAGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNSLVE 105
Query: 179 GSRV 182
G R+
Sbjct: 106 GMRM 109
>gi|328957412|ref|YP_004374798.1| ribosome-binding factor A [Carnobacterium sp. 17-4]
gi|328673736|gb|AEB29782.1| ribosome-binding factor A [Carnobacterium sp. 17-4]
Length = 115
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 67/124 (54%), Gaps = 16/124 (12%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MAN R+ V+++IQRE++D +L +V V AD I+DV V+ DLQ
Sbjct: 1 MAN-HRIGRVSQEIQREVND-ILKKRVKDPRV-------AD------VNITDVRVTGDLQ 45
Query: 124 VVKVYVSVFGDDRG-KEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
V+ S+ D +E GL + VRS+LG+R+ L TPEI+F DES E G+ +
Sbjct: 46 QATVFYSILSDKASDREKTQLGLDKASGLVRSELGQRLSLYKTPEIKFERDESVEYGNHI 105
Query: 183 IAIL 186
+L
Sbjct: 106 DELL 109
>gi|293604239|ref|ZP_06686647.1| ribosome-binding factor A [Achromobacter piechaudii ATCC 43553]
gi|292817464|gb|EFF76537.1| ribosome-binding factor A [Achromobacter piechaudii ATCC 43553]
Length = 133
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 71/152 (46%), Gaps = 24/152 (15%)
Query: 62 KCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSAD 121
K A P R +A QIQ++L++++ + D + L T+S VE+S D
Sbjct: 5 KSKAIPGRNLRLADQIQKDLAEIIQRE--------------IDMSRAGLITLSGVELSTD 50
Query: 122 LQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSR 181
KV+ +V G + E A A L KA ++ SQL + + + P +RF DE RG
Sbjct: 51 YAHAKVWFTVLGAE--PEAATALLNEKAGWLHSQLYKLLHIHTVPTLRFFHDEQIARGIE 108
Query: 182 VIAILDRIKAEKEAAKSKNKEQFESPDLPEDE 213
+ ++DR A + S PD PED+
Sbjct: 109 MSILIDR--ANRPGPHSG------VPDEPEDQ 132
>gi|308272449|emb|CBX29053.1| Ribosome-binding factor A [uncultured Desulfobacterium sp.]
Length = 119
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 14/124 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + V QIQ+ LS LL G +TTI+ V++S DL++ ++Y
Sbjct: 6 RAERVGGQIQKVLSGALLK--------------GIKDPRLEMTTITAVKMSKDLKIARIY 51
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+ G + A G KS A +++ L + LR PE+ F DES++ G ++ +L
Sbjct: 52 FTTTGGKTNADEAAKGFKSAAGFLKRSLSSELTLRYMPELIFFYDESYDYGEQIEKVLKS 111
Query: 189 IKAE 192
IK E
Sbjct: 112 IKTE 115
>gi|406669348|ref|ZP_11076626.1| ribosome-binding factor A [Facklamia ignava CCUG 37419]
gi|405583763|gb|EKB57697.1| ribosome-binding factor A [Facklamia ignava CCUG 37419]
Length = 118
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 16/132 (12%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
M+N RV V +++ RE++D+L +D V G TI+DV ++ DLQ
Sbjct: 1 MSN-HRVGRVRQEVLREVNDILRSD------VKDPRVEGV--------TITDVTLTGDLQ 45
Query: 124 VVKVYVSVFGDDRG-KEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
+Y S D G ++ AGL S +RS+LG R+ L P IRF D+S + G R+
Sbjct: 46 DAVIYYSTLSDKAGERQKTQAGLDSVQGLIRSKLGERLTLYKVPSIRFERDQSIDYGQRI 105
Query: 183 IAILDRIKAEKE 194
+LD+I E
Sbjct: 106 DQLLDQIHQTDE 117
>gi|403378761|ref|ZP_10920818.1| ribosome-binding factor A [Paenibacillus sp. JC66]
Length = 118
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 70/125 (56%), Gaps = 14/125 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R VA+QI++ELS +L ++ + +G T++ V+V+ DL KV+
Sbjct: 5 RTGRVAEQIKKELSQILQSE-------FKDPRVG-------FITLTGVDVTNDLSQAKVF 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
+SV G + KE ++ L + ++RS+L ++++LR+ PE+ F D S + GS + +L
Sbjct: 51 LSVMGTEEQKEESLRTLTRASGFLRSELAKKIRLRVMPELLFKVDSSIDYGSHIEKLLHE 110
Query: 189 IKAEK 193
I+ E+
Sbjct: 111 IQEEE 115
>gi|254490537|ref|ZP_05103723.1| ribosome-binding factor A [Methylophaga thiooxidans DMS010]
gi|224464281|gb|EEF80544.1| ribosome-binding factor A [Methylophaga thiooxydans DMS010]
Length = 124
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 58/95 (61%), Gaps = 7/95 (7%)
Query: 95 VLPEAALGADRYLS----SLTTISDVEVSADLQVVKVYVSVF-GDDRGKEV--AIAGLKS 147
V+ E AL R +S + T+S V+V+ADL+ KVYV+ F G + ++V + GL S
Sbjct: 15 VMRELALMLQREISDPRIGMVTVSHVDVTADLKYAKVYVTRFNGFESEQDVQECLQGLNS 74
Query: 148 KAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
+ Y+R L R+KLR PE++F+ D+S E G R+
Sbjct: 75 ASGYLRRGLAGRVKLRSIPELQFVYDKSLENGFRM 109
>gi|227529110|ref|ZP_03959159.1| ribosome-binding factor A [Lactobacillus vaginalis ATCC 49540]
gi|227350954|gb|EEJ41245.1| ribosome-binding factor A [Lactobacillus vaginalis ATCC 49540]
Length = 121
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 66/127 (51%), Gaps = 15/127 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
RV +A++IQRE+ D+LL V G TI+ V+V+ DLQ +Y
Sbjct: 7 RVDRLAQEIQREVDDILLK------RVRDPRVQGV--------TITGVDVTGDLQQATIY 52
Query: 129 VSVFGDDRGK-EVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187
S+ D E AGL +RS+LG R+ + TPEI+F D+S GSR+ +++
Sbjct: 53 YSILSDKASDMEKVQAGLDKATGLIRSELGARLNIFKTPEIKFERDKSIAYGSRIDQLIN 112
Query: 188 RIKAEKE 194
++ +++
Sbjct: 113 KLHQQEQ 119
>gi|254805168|ref|YP_003083389.1| ribosome-binding factor A [Neisseria meningitidis alpha14]
gi|261377491|ref|ZP_05982064.1| ribosome-binding factor A [Neisseria cinerea ATCC 14685]
gi|421563573|ref|ZP_16009392.1| ribosome-binding factor A [Neisseria meningitidis NM2795]
gi|421907103|ref|ZP_16336991.1| Ribosome-binding factor A [Neisseria meningitidis alpha704]
gi|254668710|emb|CBA06489.1| Ribosome-binding factor A [Neisseria meningitidis alpha14]
gi|269146221|gb|EEZ72639.1| ribosome-binding factor A [Neisseria cinerea ATCC 14685]
gi|393292067|emb|CCI72964.1| Ribosome-binding factor A [Neisseria meningitidis alpha704]
gi|402341269|gb|EJU76456.1| ribosome-binding factor A [Neisseria meningitidis NM2795]
Length = 123
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 70/136 (51%), Gaps = 18/136 (13%)
Query: 58 RKTVKCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVE 117
RK + A RVK +QI REL++++ T G + TI++VE
Sbjct: 2 RKPQRGYARQDRVK---EQIMRELAELVRT--------------GLKDPRAGFITINEVE 44
Query: 118 VSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFE 177
V+ D V+ +V D +E+ L+ ++RS+L +R+KL PE+ F DES E
Sbjct: 45 VTRDYSHATVFYTVLNQD-AREITEEVLEHARGHLRSELAKRIKLFKIPELHFKYDESLE 103
Query: 178 RGSRVIAILDRIKAEK 193
RG + A++D++ AEK
Sbjct: 104 RGMNLSALIDQVAAEK 119
>gi|331648968|ref|ZP_08350056.1| ribosome-binding factor A [Escherichia coli M605]
gi|331042715|gb|EGI14857.1| ribosome-binding factor A [Escherichia coli M605]
Length = 133
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 67/117 (57%), Gaps = 17/117 (14%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + VA+++Q+E++ +LQ + D L +TT+S VE+S DL KVY
Sbjct: 7 RPQRVAQEMQKEIA------LILQREI-------KDPRLGMMTTVSGVEMSRDLAYAKVY 53
Query: 129 VSVFGDDRGKEVAIAGLKS---KAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
V+ F +D+ ++ AG+K+ + ++RS LG+ M+LR+ PE+ F D S G R+
Sbjct: 54 VT-FLNDKDEDAVKAGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNSLVEGMRM 109
>gi|424781090|ref|ZP_18207956.1| Ribosome-binding factor A [Catellicoccus marimammalium M35/04/3]
gi|422842510|gb|EKU26962.1| Ribosome-binding factor A [Catellicoccus marimammalium M35/04/3]
Length = 118
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 74/132 (56%), Gaps = 16/132 (12%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MAN R + VA++IQRE++D +LQ V D + ++T I+DV V+ DLQ
Sbjct: 1 MANYRSYR-VAQEIQREVND------ILQRRV-------RDPRVQNIT-ITDVAVTGDLQ 45
Query: 124 VVKVYVSVFGDDRGK-EVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
+Y S+ D + A GL+ +R +LGRR+++ TPE+ F EDES G+ +
Sbjct: 46 QATIYYSLLSDKASDHQKAEQGLQKATGLIRKELGRRLRIYKTPELTFKEDESVRYGNHI 105
Query: 183 IAILDRIKAEKE 194
++ +++ +++
Sbjct: 106 DDLIRKMREQEQ 117
>gi|410623242|ref|ZP_11334059.1| ribosome-binding factor A [Glaciecola pallidula DSM 14239 = ACAM
615]
gi|410157164|dbj|GAC29433.1| ribosome-binding factor A [Glaciecola pallidula DSM 14239 = ACAM
615]
Length = 131
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 59/106 (55%), Gaps = 10/106 (9%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGK-EVAIAGLKSKAKYVRSQLGRRMKLRLTPE 167
+ TIS VEVS DL K+YV+ + +D K + + L+ ++R+ L +R+++R P
Sbjct: 35 GMITISSVEVSRDLAHAKIYVTFYHNDEDKIKDDLVRLQDAKGFIRTLLAKRIRMRAVPA 94
Query: 168 IRFIEDESFERGSRVIAILDRIKAEKEAAKSKNKEQFESPDLPEDE 213
+ F DES G R+ ++++ +A+ EA ++ D PEDE
Sbjct: 95 VHFFRDESITEGIRISTLVNQARAKDEA---------KAKDAPEDE 131
>gi|301300287|ref|ZP_07206496.1| ribosome-binding factor A [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|300852128|gb|EFK79803.1| ribosome-binding factor A [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 119
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 15/127 (11%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RV ++++IQRE++D+LL K ++ + + TI+ VEVS DLQ
Sbjct: 1 MAQHFRVGRLSQEIQREVNDILL--KRVRDPRVKDV------------TITGVEVSGDLQ 46
Query: 124 VVKVYVSVFGDDRGKEVAI-AGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
+Y S+ D E + GL +R +LG R+ + +TPEI+F D+S + G +
Sbjct: 47 HATIYYSILSDKASDEKKVQTGLDKATSLIRGKLGHRLSIYVTPEIKFERDKSVQYGDHI 106
Query: 183 IAILDRI 189
+L ++
Sbjct: 107 DELLRKL 113
>gi|357410857|ref|YP_004922593.1| ribosome-binding factor A [Streptomyces flavogriseus ATCC 33331]
gi|320008226|gb|ADW03076.1| ribosome-binding factor A [Streptomyces flavogriseus ATCC 33331]
Length = 153
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 78/164 (47%), Gaps = 19/164 (11%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA+ R K +A IQ +++ +K LQ + D L + TI+D V+ DL+
Sbjct: 1 MADNARAKKLADLIQ-----VVVAEK-LQRGI-------KDPRLGTHVTITDTRVTGDLR 47
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
V+ +V+GDD + A AGL+S +RS +G + TP + F+ D + +
Sbjct: 48 EATVFYTVYGDDEERASAAAGLESAKGILRSAVGAAAGTKFTPTLAFVADALPDNAKAIE 107
Query: 184 AILDRIKAE----KEAAKSKNKEQFESP-DLPEDERDW-EGDDP 221
+LDR +A +EA+ P PEDE D +GD P
Sbjct: 108 DLLDRARASDAKVREASSGATYAGGADPYRKPEDESDENDGDSP 151
>gi|291616011|ref|YP_003518753.1| RbfA [Pantoea ananatis LMG 20103]
gi|386018178|ref|YP_005936480.1| ribosome-binding factor A RbfA [Pantoea ananatis AJ13355]
gi|291151041|gb|ADD75625.1| RbfA [Pantoea ananatis LMG 20103]
gi|327396262|dbj|BAK13684.1| ribosome-binding factor A RbfA [Pantoea ananatis AJ13355]
Length = 140
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 69/127 (54%), Gaps = 20/127 (15%)
Query: 59 KTVKCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEV 118
K K P+RV ++++Q+E++ M+L ++ D L + T+S VEV
Sbjct: 5 KMAKEFGRPQRV---SQELQKEIA-MILQREI------------KDPRLGMMVTVSGVEV 48
Query: 119 SADLQVVKVYVSVFGDDRGKEVAIAGLKS---KAKYVRSQLGRRMKLRLTPEIRFIEDES 175
S DL KV+V+ F +D+ +E GLK+ + Y+R+ LG+ M+LR+ PE+ F D S
Sbjct: 49 SRDLAYAKVFVT-FLNDKDEEAVQNGLKALKEASGYIRTLLGKAMRLRIVPELTFFYDNS 107
Query: 176 FERGSRV 182
G R+
Sbjct: 108 LIEGMRM 114
>gi|228474959|ref|ZP_04059687.1| ribosome-binding factor A [Staphylococcus hominis SK119]
gi|314936569|ref|ZP_07843916.1| ribosome-binding factor A [Staphylococcus hominis subsp. hominis
C80]
gi|418620540|ref|ZP_13183344.1| ribosome-binding factor A [Staphylococcus hominis VCU122]
gi|228270944|gb|EEK12332.1| ribosome-binding factor A [Staphylococcus hominis SK119]
gi|313655188|gb|EFS18933.1| ribosome-binding factor A [Staphylococcus hominis subsp. hominis
C80]
gi|374822670|gb|EHR86690.1| ribosome-binding factor A [Staphylococcus hominis VCU122]
Length = 116
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEI 168
TI+DVE++ DL KV+++V G+ + L +++S+LG RM+LR+ PE+
Sbjct: 31 GFITITDVELTNDLSQAKVFLTVLGNKKEVNDTFKALDKAKGFIKSELGSRMRLRIVPEL 90
Query: 169 RFIEDESFERGSRV 182
F DES E G+++
Sbjct: 91 FFEYDESIEYGNKI 104
>gi|404370946|ref|ZP_10976261.1| ribosome-binding factor A [Clostridium sp. 7_2_43FAA]
gi|226912932|gb|EEH98133.1| ribosome-binding factor A [Clostridium sp. 7_2_43FAA]
Length = 116
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 76/128 (59%), Gaps = 15/128 (11%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MAN R + + ++++RE+S +++ D++ D ++++ +I+ V+V+ DL+
Sbjct: 1 MANYRGGR-INEEVRREIS-VIIRDEI------------KDPRMTAMVSITAVKVTKDLR 46
Query: 124 VVKVYVSVFGDDRG-KEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
KV+VS+FG + K A LKS + Y+R ++G+R+ LR TP+I F D+S ++
Sbjct: 47 YAKVFVSIFGKNEDEKNETFAALKSASGYIRKEIGQRINLRNTPQILFELDDSISYSMKI 106
Query: 183 IAILDRIK 190
++++ K
Sbjct: 107 EELIEKAK 114
>gi|415903252|ref|ZP_11552198.1| Ribosome-binding factor A [Herbaspirillum frisingense GSF30]
gi|407763735|gb|EKF72350.1| Ribosome-binding factor A [Herbaspirillum frisingense GSF30]
Length = 118
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 69/131 (52%), Gaps = 17/131 (12%)
Query: 73 VAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVF 132
VA QIQR+LS+++ + L + +G + TI++V+V+ D KV+ +
Sbjct: 3 VADQIQRDLSELIAFE-------LKDPRVG-------MITITEVQVTPDYAHAKVFFTTL 48
Query: 133 GDD-RGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRIKA 191
D+ + +AGL+ Y+R+QLGRR+ + PE+ F+ D S RG + ++D A
Sbjct: 49 VDNPDAIKNTLAGLRKAGGYLRTQLGRRLTIHTLPELHFVHDNSTARGIEMSRLIDEANA 108
Query: 192 EKEAAKSKNKE 202
+ AK + E
Sbjct: 109 TR--AKDSDDE 117
>gi|372267471|ref|ZP_09503519.1| ribosome-binding factor A [Alteromonas sp. S89]
Length = 135
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 53/82 (64%), Gaps = 2/82 (2%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFG-DDRGK-EVAIAGLKSKAKYVRSQLGRRMKLRLTP 166
+ ++DVEVS DL KV+V++ G DDR K ++++ L A ++RSQL + +++R P
Sbjct: 33 GMVNVNDVEVSRDLTTAKVFVTLVGEDDRSKIDISMDALNKAAGFLRSQLAKEIQIRTIP 92
Query: 167 EIRFIEDESFERGSRVIAILDR 188
++F DE+ RG + A++D+
Sbjct: 93 RLQFRYDETSVRGQHLSALIDK 114
>gi|379795637|ref|YP_005325635.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
MSHR1132]
gi|356872627|emb|CCE58966.1| ribosome-binding factor A [Staphylococcus aureus subsp. aureus
MSHR1132]
Length = 116
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 65/114 (57%), Gaps = 14/114 (12%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + V +Q+++EL D ++ +KV + +G TI+DV ++ DL KV+
Sbjct: 5 RAERVGEQMKKELMD-IINNKV------KDPRVG-------FITITDVVLTNDLSQAKVF 50
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
++V G+D+ E L +++S+LG RM+LR+ PE+ + D+S E G+++
Sbjct: 51 LTVLGNDKEVENTFKALDKAKGFIKSELGSRMRLRIMPELIYEYDQSIEYGNKI 104
>gi|452851471|ref|YP_007493155.1| Ribosome-binding factor A [Desulfovibrio piezophilus]
gi|451895125|emb|CCH48004.1| Ribosome-binding factor A [Desulfovibrio piezophilus]
Length = 113
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 63/116 (54%), Gaps = 20/116 (17%)
Query: 65 ANPRRVKMVAKQIQRELSDMLL---TDKVLQFAVLPEAALGADRYLSSLTTISDVEVSAD 121
++ RR + QI RE++ +L+ D LQ L T+S V ++A+
Sbjct: 4 SSSRRAVRMGDQIMREVATLLVEEAQDPRLQ-----------------LVTLSGVRMNAN 46
Query: 122 LQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFE 177
L++ +++ +V GD + GL+ + ++RS +GRR+KL+ TPE+RF+ D+ E
Sbjct: 47 LRIAEIFYTVSGDAEHRRKVQTGLEKASGFLRSHIGRRLKLQFTPELRFVFDDFLE 102
>gi|222055782|ref|YP_002538144.1| ribosome-binding factor A [Geobacter daltonii FRC-32]
gi|254789751|sp|B9M1G1.1|RBFA_GEOSF RecName: Full=Ribosome-binding factor A
gi|221565071|gb|ACM21043.1| ribosome-binding factor A [Geobacter daltonii FRC-32]
Length = 123
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEI 168
TI+ V+V+ D+ + +Y +V G D K+ GL S ++R ++G+ ++R P+I
Sbjct: 30 GFVTITGVKVTDDMHLATIYFTVIGSDEEKKATEQGLNSARGFIRKEMGKSFRMRYVPDI 89
Query: 169 RFIEDESFERGSRVIAILDRIKA 191
F D S E GSR+ +IL I +
Sbjct: 90 VFKYDASVEYGSRIESILKEIGS 112
>gi|359798519|ref|ZP_09301090.1| ribosome-binding factor A [Achromobacter arsenitoxydans SY8]
gi|359363341|gb|EHK65067.1| ribosome-binding factor A [Achromobacter arsenitoxydans SY8]
Length = 133
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 70/152 (46%), Gaps = 24/152 (15%)
Query: 62 KCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSAD 121
K A P R +A QIQ++L+ ++ + D + L T+S VE+S D
Sbjct: 5 KSKAIPGRNLRLADQIQKDLAGIIQRE--------------IDTTRAGLITLSGVELSTD 50
Query: 122 LQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSR 181
KV+ +V G + E A A L KA ++ SQL + + + P +RF DE RG
Sbjct: 51 YAHAKVWFTVLGAE--PEAATALLNEKAGWLHSQLYKLLHIHTVPTLRFFHDEQIARGIE 108
Query: 182 VIAILDRIKAEKEAAKSKNKEQFESPDLPEDE 213
+ ++DR A + S PD PED+
Sbjct: 109 MSILIDR--ANRPGPHSG------VPDEPEDQ 132
>gi|227968183|pdb|1KKG|A Chain A, Nmr Structure Of Ribosome-Binding Factor A (Rbfa)
Length = 108
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 69/123 (56%), Gaps = 20/123 (16%)
Query: 62 KCMANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSAD 121
K P+RV A+++Q+E++ ++L ++ D L +TT+S VE+S D
Sbjct: 3 KEFGRPQRV---AQEMQKEIA-LILQREI------------KDPRLGMMTTVSGVEMSRD 46
Query: 122 LQVVKVYVSVFGDDRGKEVAIAGLKS---KAKYVRSQLGRRMKLRLTPEIRFIEDESFER 178
L KVYV+ F +D+ ++ AG+K+ + ++RS LG+ M+LR+ PE+ F D S
Sbjct: 47 LAYAKVYVT-FLNDKDEDAVKAGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNSLVE 105
Query: 179 GSR 181
G R
Sbjct: 106 GMR 108
>gi|85712991|ref|ZP_01044029.1| ribosome-binding factor A [Idiomarina baltica OS145]
gi|85693160|gb|EAQ31120.1| ribosome-binding factor A [Idiomarina baltica OS145]
Length = 125
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 66/122 (54%), Gaps = 19/122 (15%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + V Q+QRE++ M+L +V V S+ T+SDVEVS DL KV+
Sbjct: 7 RTERVRHQLQREIA-MILQREVKDPRV-------------SMVTVSDVEVSRDLAYAKVF 52
Query: 129 VSVFGDDRGKEVAIAGLK---SKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
V+ DD + AGLK + ++RS LG+R+K R+ PE++F D S G R+ +
Sbjct: 53 VTFLHDD--DDQVKAGLKVLNQASGFIRSLLGKRIKARVVPELKFQHDGSLNEGIRMSRL 110
Query: 186 LD 187
+D
Sbjct: 111 VD 112
>gi|406838619|ref|ZP_11098213.1| ribosome-binding factor A [Lactobacillus vini DSM 20605]
Length = 122
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 64/128 (50%), Gaps = 15/128 (11%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
M R+ + ++IQRE+ D+L+ V G TI+ VEV+ DLQ
Sbjct: 1 MVRNYRIGRLEQEIQREVDDILMK------RVRDPRVQGV--------TITGVEVTGDLQ 46
Query: 124 VVKVYVSVFGDD-RGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRV 182
+Y S+ D E GL +R +LG R+ + +TPEI+F +D S + G+R+
Sbjct: 47 HATIYYSILSDQASAAEKTQTGLDKATGLIRRELGSRLSIYVTPEIKFEQDRSVQYGNRI 106
Query: 183 IAILDRIK 190
+L+++K
Sbjct: 107 DQLLNQVK 114
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.132 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,385,881,969
Number of Sequences: 23463169
Number of extensions: 126620716
Number of successful extensions: 513101
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1738
Number of HSP's successfully gapped in prelim test: 980
Number of HSP's that attempted gapping in prelim test: 509820
Number of HSP's gapped (non-prelim): 2749
length of query: 229
length of database: 8,064,228,071
effective HSP length: 138
effective length of query: 91
effective length of database: 9,121,278,045
effective search space: 830036302095
effective search space used: 830036302095
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 74 (33.1 bits)