BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027059
(229 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O65693|RBFA_ARATH Probable ribosome-binding factor A, chloroplastic OS=Arabidopsis
thaliana GN=At4g34730 PE=2 SV=2
Length = 215
Score = 304 bits (778), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 159/223 (71%), Positives = 180/223 (80%), Gaps = 11/223 (4%)
Query: 8 NHLHTNHTHQSFLSLPLHHHYPYLLPITSFNSATWAPKSTAAIHLRRS-PTRKTVKCMAN 66
N LHTN +H FL H+P + ++S A P+S A ++LR + R+TV+CMAN
Sbjct: 3 NLLHTNQSHFFFL------HHPPIYTVSSKTQAFHFPQSMAPVNLRTNLSVRRTVRCMAN 56
Query: 67 PRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVK 126
PRRVKMVAKQI RELSDMLLTD VLQ AVLPEAALGADRYLSSLTTISDVEVS DLQVVK
Sbjct: 57 PRRVKMVAKQIMRELSDMLLTDTVLQHAVLPEAALGADRYLSSLTTISDVEVSNDLQVVK 116
Query: 127 VYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
VYVSVFGDDRGK+VAIAGLKSKAKYVRS+LG+RMKLRLTPE+RFIEDE+ ERGSRVIAIL
Sbjct: 117 VYVSVFGDDRGKDVAIAGLKSKAKYVRSELGKRMKLRLTPEVRFIEDEAMERGSRVIAIL 176
Query: 187 DRIKAEKEAAKSKNKEQFESPDLPEDERDWEGDDPDEDIIYVK 229
D+IKAEK + + K E D ED++DWE DDPDEDIIYVK
Sbjct: 177 DKIKAEKGSGEGKT----EPSDSTEDDQDWEVDDPDEDIIYVK 215
>sp|Q93LL7|RBFA_NOSP7 Ribosome-binding factor A OS=Nostoc punctiforme (strain ATCC 29133
/ PCC 73102) GN=rbfA PE=3 SV=1
Length = 139
Score = 110 bits (274), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 84/130 (64%), Gaps = 12/130 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV VA+ I+RE+S MLL + DR + + +++DV+VS DLQ
Sbjct: 1 MATNRRVSRVAELIKREVSQMLLN------------GIKDDRVGTGMVSVTDVDVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K+YVS++G D K +AGLKS YVRS+LG R++LR TPE+ F+ED S ERG++V+
Sbjct: 49 HAKIYVSIYGTDEAKVETMAGLKSATGYVRSELGARVRLRRTPEVIFLEDRSIERGNKVL 108
Query: 184 AILDRIKAEK 193
A+L ++ ++
Sbjct: 109 ALLSQLNHDR 118
>sp|B8HWS1|RBFA_CYAP4 Ribosome-binding factor A OS=Cyanothece sp. (strain PCC 7425 / ATCC
29141) GN=rbfA PE=3 SV=1
Length = 134
Score = 108 bits (270), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 92/145 (63%), Gaps = 12/145 (8%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV VA+ I+RE+S ML++ + DR S + +++DV++S DLQ
Sbjct: 1 MATDRRVARVAELIKREISQMLMS------------GIKDDRVGSGMVSVTDVDLSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G + + +AGLK+ YVRS+LG R++LR TPE+ F+ED S ERG++V+
Sbjct: 49 HAKIFVSIYGTEAARAETMAGLKAATGYVRSELGHRVRLRRTPEVVFLEDRSLERGTQVL 108
Query: 184 AILDRIKAEKEAAKSKNKEQFESPD 208
++L+R+ E++ ++ E P+
Sbjct: 109 SLLNRLSEERQKNADLDEMAAEEPE 133
>sp|Q3M9Q8|RBFA_ANAVT Ribosome-binding factor A OS=Anabaena variabilis (strain ATCC 29413
/ PCC 7937) GN=rbfA PE=3 SV=1
Length = 133
Score = 107 bits (268), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 83/127 (65%), Gaps = 12/127 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV VA+ I+RE+S ML+ + DR + + +++DV+VS DLQ
Sbjct: 1 MATNRRVSRVAELIKREVSQMLIN------------GIKDDRVGTGMVSVTDVDVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K+YVS++G + K +AGLKS +VRS+LG R++LR TPE+ FIED S ERG++V+
Sbjct: 49 HAKIYVSIYGTEEAKAETMAGLKSATGFVRSELGARVRLRRTPEVTFIEDRSIERGTKVL 108
Query: 184 AILDRIK 190
+L++++
Sbjct: 109 TLLNKLE 115
>sp|Q8Z0M8|RBFA_NOSS1 Ribosome-binding factor A OS=Nostoc sp. (strain PCC 7120 / UTEX
2576) GN=rbfA PE=3 SV=1
Length = 133
Score = 107 bits (268), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 83/127 (65%), Gaps = 12/127 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV VA+ I+RE+S ML+ + DR + + +++DV+VS DLQ
Sbjct: 1 MATNRRVSRVAELIKREVSQMLIN------------GIKDDRVGTGMVSVTDVDVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K+YVS++G + K +AGLKS +VRS+LG R++LR TPE+ FIED S ERG++V+
Sbjct: 49 HAKIYVSIYGTEEAKAETMAGLKSATGFVRSELGARVRLRRTPEVTFIEDRSIERGTKVL 108
Query: 184 AILDRIK 190
+L++++
Sbjct: 109 TLLNKLE 115
>sp|B0JRP8|RBFA_MICAN Ribosome-binding factor A OS=Microcystis aeruginosa (strain
NIES-843) GN=rbfA PE=3 SV=1
Length = 128
Score = 106 bits (265), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 90/140 (64%), Gaps = 12/140 (8%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MAN RRV V+ I+RE+S MLL + + DR + + +++DV++S DLQ
Sbjct: 1 MANDRRVSRVSSLIKREVSQMLLME------------IKDDRVGAGMVSVTDVDLSHDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G++ K +AGLK+ A +VR +LG+R++LR TPE+ F+ED S ERG R++
Sbjct: 49 HAKIFVSIYGNEDAKAETMAGLKASAGFVRRELGQRIRLRRTPEVVFLEDSSLERGDRML 108
Query: 184 AILDRIKAEKEAAKSKNKEQ 203
+LD IK ++ ++E+
Sbjct: 109 HLLDHIKTDRPPEDDDSEEE 128
>sp|Q5N2X2|RBFA_SYNP6 Ribosome-binding factor A OS=Synechococcus sp. (strain ATCC 27144 /
PCC 6301 / SAUG 1402/1) GN=rbfA PE=3 SV=1
Length = 137
Score = 103 bits (257), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 83/126 (65%), Gaps = 12/126 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV+ VA I+RE+S ML++ + DR + + +++DV VS DLQ
Sbjct: 1 MATNRRVERVASLIKREVSQMLMS------------GIKDDRVGAGMVSVTDVVVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G K + GLKS A YVRS+LG+R++LR TPE+ F+ED+ ERG++VI
Sbjct: 49 HTKIFVSIYGTPEAKAETMEGLKSAASYVRSELGQRVRLRRTPEVIFVEDKGLERGTQVI 108
Query: 184 AILDRI 189
++L+++
Sbjct: 109 SLLEQL 114
>sp|Q31RD2|RBFA_SYNE7 Ribosome-binding factor A OS=Synechococcus elongatus (strain PCC
7942) GN=rbfA PE=3 SV=1
Length = 137
Score = 103 bits (257), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 83/126 (65%), Gaps = 12/126 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV+ VA I+RE+S ML++ + DR + + +++DV VS DLQ
Sbjct: 1 MATNRRVERVASLIKREVSQMLMS------------GIKDDRVGAGMVSVTDVVVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G K + GLKS A YVRS+LG+R++LR TPE+ F+ED+ ERG++VI
Sbjct: 49 HTKIFVSIYGTPEAKAETMEGLKSAASYVRSELGQRVRLRRTPEVIFVEDKGLERGTQVI 108
Query: 184 AILDRI 189
++L+++
Sbjct: 109 SLLEQL 114
>sp|B0CDK8|RBFA_ACAM1 Ribosome-binding factor A OS=Acaryochloris marina (strain MBIC
11017) GN=rbfA PE=3 SV=1
Length = 138
Score = 102 bits (253), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 86/140 (61%), Gaps = 12/140 (8%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV VA+ I+RE+S MLL ++ DR S + +++ V++S DLQ
Sbjct: 1 MATGRRVSRVAELIKREVSQMLLH------------SIKDDRVGSGMISVTAVDLSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G D + +AGL+S YVR QLG R+ LR TPE+ F ED SFE G++V+
Sbjct: 49 HAKIFVSIYGTDEARAETMAGLESATGYVRKQLGHRIHLRRTPEVIFCEDRSFEEGNQVL 108
Query: 184 AILDRIKAEKEAAKSKNKEQ 203
++L ++ E++ + + E+
Sbjct: 109 SLLHKLDHERQNKPAASTEK 128
>sp|Q110L1|RBFA_TRIEI Ribosome-binding factor A OS=Trichodesmium erythraeum (strain
IMS101) GN=rbfA PE=3 SV=1
Length = 137
Score = 101 bits (251), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 84/131 (64%), Gaps = 12/131 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RR+ +A I++E+S MLL + +R + +++DV+VS DLQ
Sbjct: 1 MAIARRISRIASLIKQEISQMLL------------HGIKDNRVGIGMVSVTDVDVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
KV+VS++G D + +AGL+S YVRS+LG+R+++R TPE+ F+ED S ERG+ ++
Sbjct: 49 HAKVFVSIYGSDEVRSQTMAGLRSATGYVRSELGKRIRMRRTPEVIFVEDRSLERGTEIL 108
Query: 184 AILDRIKAEKE 194
++L+++ E++
Sbjct: 109 SLLNKLSQERQ 119
>sp|Q8DIF9|RBFA_THEEB Ribosome-binding factor A OS=Thermosynechococcus elongatus (strain
BP-1) GN=rbfA PE=3 SV=1
Length = 126
Score = 101 bits (251), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 88/134 (65%), Gaps = 12/134 (8%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV VA+ I+RE+S +L+ + + +R + + +++DVEVS DLQ
Sbjct: 1 MATERRVARVAELIKREVSQLLMYE------------IRDERVGAGMVSVTDVEVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++ + + +AGLK+ + +VR +LG+R++LR TPE+ FIED S ERGSRV+
Sbjct: 49 HAKIFVSIYSTEEVRRSTMAGLKAASGFVRRELGQRIRLRRTPEVVFIEDRSLERGSRVL 108
Query: 184 AILDRIKAEKEAAK 197
A+L++I ++ ++
Sbjct: 109 ALLNQIGQQQSTSE 122
>sp|Q2JW85|RBFA_SYNJA Ribosome-binding factor A OS=Synechococcus sp. (strain JA-3-3Ab)
GN=rbfA PE=3 SV=1
Length = 149
Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 93/160 (58%), Gaps = 16/160 (10%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV VA+ I+RE+S +LL++ + DR + + +I DVEVS DLQ
Sbjct: 1 MATARRVARVAELIKREVSQILLSE------------IKDDRVGAGMVSIVDVEVSNDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
+++VS++GD+ ++ + GL S +VR ++G+R+ LR P + F++D S ERGSRV+
Sbjct: 49 NARIFVSIYGDEAAQQQTMEGLASATPFVRREIGQRLGLRRVPTVVFLQDRSLERGSRVL 108
Query: 184 AILDRIKAEKEAAKSKNKEQFESPDLPEDERDWEGDDPDE 223
A+L++++ EA + + P + D G + DE
Sbjct: 109 ALLNQLRQPAEAQQQEGSH----PGVEGRMADTPGGEEDE 144
>sp|Q55625|RBFA_SYNY3 Ribosome-binding factor A OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=rbfA PE=3 SV=1
Length = 133
Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 79/126 (62%), Gaps = 12/126 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV V+ I+RE+S MLL + + DR + + ++++VEVS DLQ
Sbjct: 1 MATSRRVSRVSSLIKREVSQMLLHE------------IKDDRVGTGMVSVTEVEVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G K +AGL S A +VR +LG+RM+LR TPE+ F+ED S ERG +++
Sbjct: 49 HAKIFVSIYGSPEAKASTMAGLHSAAPFVRRELGQRMRLRRTPEVSFLEDRSLERGDKIL 108
Query: 184 AILDRI 189
+L+ +
Sbjct: 109 NLLNNL 114
>sp|Q2JPS6|RBFA_SYNJB Ribosome-binding factor A OS=Synechococcus sp. (strain
JA-2-3B'a(2-13)) GN=rbfA PE=3 SV=1
Length = 144
Score = 99.0 bits (245), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 96/158 (60%), Gaps = 15/158 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV VA+ I+RE+S +LL++ + DR + + +I DVEVS DLQ
Sbjct: 1 MATARRVARVAELIKREVSQILLSE------------IKDDRVGAGMVSIVDVEVSNDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
+++VS++GD+ + A+ GL + +VR ++G+R+ LR P + F++D S ERGSRV+
Sbjct: 49 NARIFVSIYGDETAQHQAMEGLAAATPFVRREIGQRLSLRRVPTVVFLQDRSLERGSRVL 108
Query: 184 AILDRIKAEKEA-AKSKNKEQFESPDLPEDERDWEGDD 220
A+L++++ EA A++ +E E + E E + G +
Sbjct: 109 ALLNQLRPTFEAKAQTGVEEPLE--NTAEGEENPSGGE 144
>sp|B7KDJ9|RBFA_CYAP7 Ribosome-binding factor A OS=Cyanothece sp. (strain PCC 7424)
GN=rbfA PE=3 SV=1
Length = 131
Score = 98.6 bits (244), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 83/132 (62%), Gaps = 13/132 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV V+ I+RE+S MLL + DR + + +I+DV+VS DLQ
Sbjct: 1 MATDRRVSRVSSLIKREVSQMLL------------HGIKDDRVGAGMVSITDVDVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G ++ K + GLKS +VR +LG+R++LR TPE+ F+ED S ERG R +
Sbjct: 49 HAKIFVSIYGTEQAKAETMEGLKSSVGFVRRELGQRIRLRRTPEVVFLEDTSLERGDRTL 108
Query: 184 AILDRIK-AEKE 194
+L++++ A KE
Sbjct: 109 HLLNQLQDARKE 120
>sp|B1WW94|RBFA_CYAA5 Ribosome-binding factor A OS=Cyanothece sp. (strain ATCC 51142)
GN=rbfA PE=3 SV=1
Length = 129
Score = 97.8 bits (242), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 78/127 (61%), Gaps = 12/127 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MAN RRV V+ I+RE+S MLL D + DR + + +++DV++S DLQ
Sbjct: 1 MANSRRVSRVSSLIKREVSQMLLFD------------IKDDRVGAGMVSVTDVDLSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G + K + GLKS YVR +L +R++LR PE+RF ED ERG +++
Sbjct: 49 HAKIFVSIYGTEEAKVETMEGLKSSEGYVRKELAQRIRLRRAPEVRFFEDHGIERGDKML 108
Query: 184 AILDRIK 190
+L+ I+
Sbjct: 109 HLLNEIR 115
>sp|A9BCX0|RBFA_PROM4 Ribosome-binding factor A OS=Prochlorococcus marinus (strain MIT
9211) GN=rbfA PE=3 SV=1
Length = 130
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 89/141 (63%), Gaps = 17/141 (12%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA+ RRV+ V+ I++E+S +LL + +R SS+ TI++VEVS DLQ
Sbjct: 1 MAHGRRVEKVSALIRKEMSQLLLD------------GIRDERVASSMVTITEVEVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS+FG D +E A +GL++ + ++R +LGRR+++R PEI F D+ E+GS V+
Sbjct: 49 HCKIFVSIFGQDPKREEAFSGLQAASGFLRGELGRRLQMRRAPEIVFKLDKGMEKGSSVL 108
Query: 184 AILDRIKAEKEAAKSKNKEQF 204
+L +++ E+ KNK++
Sbjct: 109 DLLGKLEEER-----KNKDEI 124
>sp|B7K2E7|RBFA_CYAP8 Ribosome-binding factor A OS=Cyanothece sp. (strain PCC 8801)
GN=rbfA PE=3 SV=1
Length = 128
Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 79/127 (62%), Gaps = 12/127 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MAN RRV V+ I+RE+S MLL D + DR + + ++++V+VS DLQ
Sbjct: 1 MANSRRVSRVSSLIKREVSQMLLHD------------IKDDRVGAGMVSVTEVDVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
++VS++G ++ + + GLKS +VR +L RM+LR +PE+ F +D S ERG R++
Sbjct: 49 HATIFVSIYGSEQAQAETMEGLKSSTSFVRRELSHRMRLRRSPEVVFRQDHSLERGDRMV 108
Query: 184 AILDRIK 190
+L++IK
Sbjct: 109 HLLNQIK 115
>sp|Q7NE48|RBFA_GLOVI Ribosome-binding factor A OS=Gloeobacter violaceus (strain PCC
7421) GN=rbfA PE=3 SV=1
Length = 129
Score = 94.0 bits (232), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 80/130 (61%), Gaps = 11/130 (8%)
Query: 73 VAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVF 132
V + I+RE+SDMLL ++ R + L +++DVEV+ DL+ K++VS+F
Sbjct: 9 VGELIKREVSDMLLRGQIKD-----------PRVGAGLVSVTDVEVTGDLRQAKIFVSIF 57
Query: 133 GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRIKAE 192
G +++ + L +VR ++G R++LR TPEI F++D S ERG+R+ ++D I+AE
Sbjct: 58 GTPEAQKLTMMALAEVTGFVRQEIGHRIRLRYTPEIAFVQDRSLERGARITRLIDEIRAE 117
Query: 193 KEAAKSKNKE 202
+EA + +E
Sbjct: 118 EEARAAHKEE 127
>sp|B1XLD1|RBFA_SYNP2 Ribosome-binding factor A OS=Synechococcus sp. (strain ATCC 27264 /
PCC 7002 / PR-6) GN=rbfA PE=3 SV=1
Length = 131
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 80/127 (62%), Gaps = 12/127 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MAN RRV V+ I+RE+S ML+ D + DR + + +I++VEVS DLQ
Sbjct: 1 MANSRRVSKVSSLIKREVSLMLMQD------------IKDDRVGAGMVSITEVEVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G + + + GL++ +VR LG+R++LR +PE+ FIED S E G R+I
Sbjct: 49 HAKIFVSIYGSEEARAETMEGLRASQGFVRRTLGQRIRLRRSPEVLFIEDRSLEEGDRMI 108
Query: 184 AILDRIK 190
++++++
Sbjct: 109 HLINQLE 115
>sp|Q3AH50|RBFA_SYNSC Ribosome-binding factor A OS=Synechococcus sp. (strain CC9605)
GN=rbfA PE=3 SV=1
Length = 140
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 83/131 (63%), Gaps = 12/131 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV+ VA I++E+S++++ + +R + +I++VEVS DLQ
Sbjct: 1 MAQGRRVERVAALIRKEVSELMIN------------GIRDERVHHGMVSITEVEVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VSVFG+ + ++ + GL++ + ++R +LGRR+++R PE+ F D ERG+ V+
Sbjct: 49 HCKIFVSVFGEAQERDQVLEGLQAASGFLRGELGRRLQMRRAPEVVFQLDRGLERGTSVL 108
Query: 184 AILDRIKAEKE 194
+L+R++ E++
Sbjct: 109 GLLNRLEDERQ 119
>sp|A3DE43|RBFA_CLOTH Ribosome-binding factor A OS=Clostridium thermocellum (strain ATCC
27405 / DSM 1237) GN=rbfA PE=3 SV=1
Length = 123
Score = 87.0 bits (214), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 79/129 (61%), Gaps = 13/129 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R++ ++++I+RE+SD++ + D LS L +I++V V+ DL+ KVY
Sbjct: 3 RIERISEEIKREISDIIQNEL-------------KDPRLSKLISITEVNVTKDLRYAKVY 49
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VSV G + K ++ GLKS A ++R ++GRR++LR TPEI F D S ERG+ + +++
Sbjct: 50 VSVMGSEEEKANSLEGLKSAAGFIRREIGRRVQLRYTPEIHFELDNSIERGAYITKLINE 109
Query: 189 IKAEKEAAK 197
A+ + +K
Sbjct: 110 TSAQNKGSK 118
>sp|Q7TTS8|RBFA_SYNPX Ribosome-binding factor A OS=Synechococcus sp. (strain WH8102)
GN=rbfA PE=3 SV=1
Length = 134
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 85/144 (59%), Gaps = 19/144 (13%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV+ VA I++E S++L+ + +R + +I++VEVS DLQ
Sbjct: 1 MAQGRRVERVAALIRKETSELLIN------------GIRDERVHQGMVSITNVEVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS+FGD+ + + GL++ + Y++ +LGRR+++R P++ F D ERG+ V+
Sbjct: 49 HCKIFVSIFGDEASQLQVMEGLQAASGYLKGELGRRLQMRRAPDVVFQLDRGIERGTSVL 108
Query: 184 AILDRIKAEKEAAKSKNKEQFESP 207
+L++++ E+ KE+ E P
Sbjct: 109 GLLNKLEDER-------KERGEIP 125
>sp|A5GQM5|RBFA_SYNR3 Ribosome-binding factor A OS=Synechococcus sp. (strain RCC307)
GN=rbfA PE=3 SV=1
Length = 131
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 80/131 (61%), Gaps = 12/131 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA+ RRV+ VA I+RE+S++L+ + +R + +I++V V+ DLQ
Sbjct: 1 MAHGRRVERVASMIRREMSELLVN------------GVRDERVNQGMVSITNVVVAGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
KV VS+FG + ++ A+AGL+S A Y+R +L RR+ +R TPE+ F D+ +G V+
Sbjct: 49 HCKVSVSIFGSESEQDQAMAGLRSAAPYLRGELSRRLNMRRTPELVFHHDKGLAQGVEVL 108
Query: 184 AILDRIKAEKE 194
+L +++ E++
Sbjct: 109 GLLSKLEEERQ 119
>sp|A5GNX9|RBFA_SYNPW Ribosome-binding factor A OS=Synechococcus sp. (strain WH7803)
GN=rbfA PE=3 SV=1
Length = 140
Score = 85.5 bits (210), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 87/158 (55%), Gaps = 19/158 (12%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV+ VA I++E S++L+ + DR L +I+ V+VS DLQ
Sbjct: 1 MAPGRRVERVAALIRKETSELLMH------------GIRDDRVHQGLISITQVDVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VSV D G+ + GL++ + ++R +LGRR+++R PE+ F D E+G+ V+
Sbjct: 49 HCKIFVSVLADPEGRAQVMEGLQAASSFLRGELGRRLQMRRAPEVVFHLDRGLEKGASVL 108
Query: 184 AILDRIKAEKEAAKSKNKEQFESPDLPEDERDWEGDDP 221
+L ++ E+ +E+ E P +D ++ D+P
Sbjct: 109 GLLGDLERER-------QERGEIPPGSDDAQNCHDDEP 139
>sp|Q7VE81|RBFA_PROMA Ribosome-binding factor A OS=Prochlorococcus marinus (strain SARG /
CCMP1375 / SS120) GN=rbfA PE=3 SV=1
Length = 130
Score = 84.7 bits (208), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 81/130 (62%), Gaps = 12/130 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV+ VA I++E+S++L + R +++ TI++VEVS DLQ
Sbjct: 1 MAQSRRVEKVAALIRKEMSELL------------SNGIRDQRVNTTMITITEVEVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G++ K+ +GL++ +++ +LGRR+++R PE+ F D E+G V+
Sbjct: 49 HCKIFVSIYGNEIQKDEVFSGLEASQSFLKGELGRRLQMRRAPEVVFKLDRGMEKGISVL 108
Query: 184 AILDRIKAEK 193
+L++++AE+
Sbjct: 109 NLLEKLEAER 118
>sp|Q7V4I8|RBFA_PROMM Ribosome-binding factor A OS=Prochlorococcus marinus (strain MIT
9313) GN=rbfA PE=3 SV=1
Length = 142
Score = 84.3 bits (207), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 81/132 (61%), Gaps = 12/132 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV+ VA I+RE S++L+ + +R + +I++VEVS DLQ
Sbjct: 1 MAPGRRVERVAALIRRETSELLI------------HGIRDERVHQGMVSITNVEVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G++ + + GL++ + ++R +LGRR+++R PE+ F D E+G+ V+
Sbjct: 49 HCKIFVSIYGEEIQRSEVLEGLEAASGFLRGELGRRLQMRRAPEVHFHLDRGIEKGTSVL 108
Query: 184 AILDRIKAEKEA 195
+L++++ ++E
Sbjct: 109 NLLEQLEQQRET 120
>sp|A2CCY5|RBFA_PROM3 Ribosome-binding factor A OS=Prochlorococcus marinus (strain MIT
9303) GN=rbfA PE=3 SV=1
Length = 142
Score = 84.3 bits (207), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 81/132 (61%), Gaps = 12/132 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV+ VA I+RE S++L+ + +R + +I++VEVS DLQ
Sbjct: 1 MAPGRRVERVAALIRRETSELLI------------HGIRDERVHQGMVSITNVEVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS++G++ + + GL++ + ++R +LGRR+++R PE+ F D E+G+ V+
Sbjct: 49 HCKIFVSIYGEEIQRSEVLEGLEAASGFLRGELGRRLQMRRAPEVHFHLDRGIEKGTSVL 108
Query: 184 AILDRIKAEKEA 195
+L++++ ++E
Sbjct: 109 NLLEQLEQQRET 120
>sp|Q65JH9|RBFA_BACLD Ribosome-binding factor A OS=Bacillus licheniformis (strain DSM 13
/ ATCC 14580) GN=rbfA PE=3 SV=1
Length = 117
Score = 84.0 bits (206), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 74/131 (56%), Gaps = 20/131 (15%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R V +Q+++EL D++ L D + F T++DV VS DLQ+
Sbjct: 4 RATRVGEQMKKELGDIIGRKLKDPRIGFL-----------------TVTDVRVSGDLQIA 46
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
KVY+SV GD++ +E + GL ++RS+LG R++LR TPEI F DES + G+R+ +
Sbjct: 47 KVYISVLGDEKKREETLKGLAKAKGFIRSELGNRIRLRKTPEIHFEFDESIDYGNRIETL 106
Query: 186 LDRIKAEKEAA 196
+ + A KE +
Sbjct: 107 IHELNANKEES 117
>sp|Q3B014|RBFA_SYNS9 Ribosome-binding factor A OS=Synechococcus sp. (strain CC9902)
GN=rbfA PE=3 SV=1
Length = 134
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 80/131 (61%), Gaps = 12/131 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV+ VA I++E S++L+ + +R + +I+ VEV+ DLQ
Sbjct: 1 MAQGRRVERVAALIRKETSELLIN------------GIRDERVHKGMVSITSVEVAGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K++VS+FG+ + + GL++ + ++R +LGRR+++R PE++F D E+G+ V+
Sbjct: 49 HCKIFVSIFGEPNDQNEVMEGLEAASGFLRGELGRRLQMRRAPEVKFQLDRGLEKGTSVL 108
Query: 184 AILDRIKAEKE 194
+L++++ +++
Sbjct: 109 GLLNQLEDQRQ 119
>sp|P32731|RBFA_BACSU Ribosome-binding factor A OS=Bacillus subtilis (strain 168) GN=rbfA
PE=3 SV=1
Length = 117
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 74/128 (57%), Gaps = 20/128 (15%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R V +Q+++EL D++ L D + F T++DV VS DLQ+
Sbjct: 4 RANRVGEQMKKELGDIISRKLKDPRIGF-----------------LTVTDVRVSGDLQIA 46
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
KVY+SV GD++ +E A+ GL ++RS++G R++LR TPEI F DES + G+R+ +
Sbjct: 47 KVYISVLGDEKKREEALKGLAKAKGFIRSEIGSRIRLRKTPEIEFEFDESIDYGNRIETL 106
Query: 186 LDRIKAEK 193
+ + +EK
Sbjct: 107 IHELHSEK 114
>sp|Q0I721|RBFA_SYNS3 Ribosome-binding factor A OS=Synechococcus sp. (strain CC9311)
GN=rbfA PE=3 SV=1
Length = 134
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 84/147 (57%), Gaps = 13/147 (8%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MA RRV+ VA I++E S++L+ + +R + +I++VEVS DLQ
Sbjct: 1 MAQGRRVERVAALIRKETSELLI------------HGIRDERVHQGMVSITEVEVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
+++VSVFG+ K+ + GL++ ++R +LGRR+++R PEI F D E+G+ V+
Sbjct: 49 HCRIFVSVFGEQAQKDEVMDGLEAARGFLRGELGRRLQMRRAPEIVFKLDLGIEKGTTVL 108
Query: 184 AILDRIKAEKEAAKSKNKEQFESPDLP 210
+L ++ E++ + E E PD P
Sbjct: 109 HLLGELERERD-ERGDVTEGTELPDNP 134
>sp|Q5L0I6|RBFA_GEOKA Ribosome-binding factor A OS=Geobacillus kaustophilus (strain
HTA426) GN=rbfA PE=3 SV=2
Length = 127
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 78/137 (56%), Gaps = 20/137 (14%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R V +Q+++ELSD++ L D + F T++DV V+ DLQ
Sbjct: 4 RATRVGEQMKKELSDIISRRLKDPRIGFV-----------------TVTDVRVTGDLQQA 46
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
KVY+SV GDD+ +E + L+ ++RS++G+R++LR TPEI F DE+ E GSR+ +
Sbjct: 47 KVYISVLGDDKQRENTLKALEKAKGFIRSEIGQRIRLRKTPEIFFEIDETMEYGSRIEQL 106
Query: 186 LDRIKAEKEAAKSKNKE 202
+ +I ++ AK + E
Sbjct: 107 IRQISSDDHPAKEADGE 123
>sp|A8FDD3|RBFA_BACP2 Ribosome-binding factor A OS=Bacillus pumilus (strain SAFR-032)
GN=rbfA PE=3 SV=1
Length = 116
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 71/121 (58%), Gaps = 20/121 (16%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R V +Q+++EL D+L L D + F T++DVEVS DLQ+
Sbjct: 4 RATRVGEQMKKELGDILGRKLKDPRIGF-----------------LTVTDVEVSGDLQIA 46
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
KVY+SV GD++ +E + GL Y+RS++G R++LR TPE+ F DES + G+R+ ++
Sbjct: 47 KVYISVLGDEKKREETLKGLAKAKGYIRSEIGNRIRLRKTPELHFEFDESVDYGNRIESL 106
Query: 186 L 186
+
Sbjct: 107 I 107
>sp|B1KWK6|RBFA_CLOBM Ribosome-binding factor A OS=Clostridium botulinum (strain Loch
Maree / Type A3) GN=rbfA PE=3 SV=1
Length = 120
Score = 81.6 bits (200), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 61/90 (67%)
Query: 104 DRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLR 163
D LS++ +++DV+V+ DL+ KVYVS+FG+++ KE ++ LKS ++R ++GRR+KLR
Sbjct: 27 DPRLSAMVSVTDVDVTKDLKYAKVYVSIFGNEKAKEESLQALKSSVGFIRKEIGRRVKLR 86
Query: 164 LTPEIRFIEDESFERGSRVIAILDRIKAEK 193
TPE+ D S ERG + +L IK K
Sbjct: 87 NTPEVIIEVDNSIERGMHIDELLHSIKENK 116
>sp|A7Z4T6|RBFA_BACA2 Ribosome-binding factor A OS=Bacillus amyloliquefaciens (strain
FZB42) GN=rbfA PE=3 SV=2
Length = 117
Score = 81.3 bits (199), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 74/128 (57%), Gaps = 20/128 (15%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R V +Q+++EL D++ L D + F T++DV VS DLQ+
Sbjct: 4 RANRVGEQMKKELGDIISRKLKDPRIGF-----------------LTVTDVRVSGDLQIA 46
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
KVY+SV G ++ KE A+ GL+ ++RS++G R++LR TPE+ F DES E G+R+ +
Sbjct: 47 KVYISVLGGEKKKEEALKGLEKAKGFIRSEIGSRIRLRKTPELEFEFDESIEYGNRIETL 106
Query: 186 LDRIKAEK 193
+ + ++K
Sbjct: 107 IHELHSDK 114
>sp|A2BZT9|RBFA_PROM1 Ribosome-binding factor A OS=Prochlorococcus marinus (strain
NATL1A) GN=rbfA PE=3 SV=1
Length = 123
Score = 81.3 bits (199), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 83/132 (62%), Gaps = 12/132 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MAN RRV+ +A ++RE+S++L+ + +R ++ TI+ VEVS DLQ
Sbjct: 1 MANSRRVEKLAALLKREISELLVN------------GIRDERIHQAMITITSVEVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
++++S+FG+++ K+ + GL+ ++R++L RR+++R +PE+ F D+ +G V+
Sbjct: 49 HARIFISLFGEEKKKDQVLVGLEEAKGFIRAELARRLQMRRSPELVFKIDKGMTKGPEVL 108
Query: 184 AILDRIKAEKEA 195
+L+ ++ E+++
Sbjct: 109 DLLNALELERKS 120
>sp|C0ZF49|RBFA_BREBN Ribosome-binding factor A OS=Brevibacillus brevis (strain 47 / JCM
6285 / NBRC 100599) GN=rbfA PE=3 SV=1
Length = 121
Score = 81.3 bits (199), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 78/129 (60%), Gaps = 14/129 (10%)
Query: 66 NPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
N R+ V ++I++ELS VLQ L + +G T++DVEVS+DLQ+
Sbjct: 2 NKTRISRVGEEIKKELS------LVLQRG-LKDPRVG-------FVTVTDVEVSSDLQLA 47
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
KV+VS+FG + ++ ++AGL Y+R+++G+R+KLR P+ F DES + GS++ +I
Sbjct: 48 KVFVSIFGSEEERKASLAGLTKAKGYLRTEIGKRVKLRHIPDFVFKLDESIDYGSKIESI 107
Query: 186 LDRIKAEKE 194
L I E E
Sbjct: 108 LREISTEGE 116
>sp|Q9KA79|RBFA_BACHD Ribosome-binding factor A OS=Bacillus halodurans (strain ATCC
BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
GN=rbfA PE=3 SV=1
Length = 116
Score = 81.3 bits (199), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 75/134 (55%), Gaps = 21/134 (15%)
Query: 64 MANPRRVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSA 120
M+N R V +Q+++ELSD+ L D ++F T++ V+V+
Sbjct: 1 MSNVR-ANRVGEQMKKELSDIFMRELKDPRIEFV-----------------TVTGVDVTG 42
Query: 121 DLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGS 180
DLQ VY++V GDD KE +AGL ++RS++G+R++LR TPE+ F DES E G+
Sbjct: 43 DLQQANVYITVLGDDEQKEATLAGLSKAKGFIRSEIGKRIRLRKTPELFFHFDESIEYGN 102
Query: 181 RVIAILDRIKAEKE 194
R+ +L I + E
Sbjct: 103 RIEKLLQDINRDGE 116
>sp|B1II48|RBFA_CLOBK Ribosome-binding factor A OS=Clostridium botulinum (strain Okra /
Type B1) GN=rbfA PE=3 SV=1
Length = 120
Score = 80.9 bits (198), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 74/122 (60%), Gaps = 13/122 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + +++++E+S+++ D D LS++ +++DV+V+ DL+ KVY
Sbjct: 5 RAGRINEEVKKEVSNIIHNDI-------------KDPRLSAMVSVTDVDVTKDLKYAKVY 51
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VS+FG+++ KE ++ LKS ++R ++GRR+KLR TPE+ D S ERG + +L
Sbjct: 52 VSIFGNEKAKEESLQALKSSVGFIRKEIGRRVKLRNTPEVIIEVDNSIERGMHIDELLHS 111
Query: 189 IK 190
IK
Sbjct: 112 IK 113
>sp|A4IMD9|RBFA_GEOTN Ribosome-binding factor A OS=Geobacillus thermodenitrificans
(strain NG80-2) GN=rbfA PE=3 SV=1
Length = 128
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 73/127 (57%), Gaps = 20/127 (15%)
Query: 69 RVKMVAKQIQRELSDML---LTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVV 125
R V +Q+++ELSD++ L D + F T++DV V+ DLQ
Sbjct: 4 RATRVGEQMKKELSDIIGRKLKDPRIGFV-----------------TVTDVRVTGDLQQA 46
Query: 126 KVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAI 185
KVY+SVFGDD +E + L+ ++RS++G+R++LR TPEI F DE+ E GSR+ +
Sbjct: 47 KVYISVFGDDEQRENTLKALEKAKGFIRSEIGQRIRLRKTPEILFEIDETIEYGSRIERL 106
Query: 186 LDRIKAE 192
+ +I E
Sbjct: 107 IRQISDE 113
>sp|A7GG05|RBFA_CLOBL Ribosome-binding factor A OS=Clostridium botulinum (strain
Langeland / NCTC 10281 / Type F) GN=rbfA PE=3 SV=1
Length = 120
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 73/122 (59%), Gaps = 13/122 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + +++++E+S+++ D D LS++ +++DV V+ DL+ KVY
Sbjct: 5 RAGRINEEVKKEVSNIIHNDI-------------KDPRLSAMVSVTDVNVTKDLKYAKVY 51
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VS+FG+++ KE ++ LKS ++R ++GRR+KLR TPE+ D S ERG + +L
Sbjct: 52 VSIFGNEKAKEESLQALKSSVGFIRKEVGRRVKLRNTPEVIIEVDNSIERGMHIDELLHS 111
Query: 189 IK 190
IK
Sbjct: 112 IK 113
>sp|C3L0B5|RBFA_CLOB6 Ribosome-binding factor A OS=Clostridium botulinum (strain 657 /
Type Ba4) GN=rbfA PE=3 SV=1
Length = 120
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 73/122 (59%), Gaps = 13/122 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + +++++E+S+++ D D LS++ +++DV V+ DL+ KVY
Sbjct: 5 RAGRINEEVKKEVSNIIHNDI-------------KDPRLSAMVSVTDVNVTKDLKYAKVY 51
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VS+FG+++ KE ++ LKS ++R ++GRR+KLR TPE+ D S ERG + +L
Sbjct: 52 VSIFGNEKAKEESLQALKSSVGFIRKEVGRRVKLRNTPEVIIEVDNSIERGMHIDELLHS 111
Query: 189 IK 190
IK
Sbjct: 112 IK 113
>sp|C1FS58|RBFA_CLOBJ Ribosome-binding factor A OS=Clostridium botulinum (strain Kyoto /
Type A2) GN=rbfA PE=3 SV=1
Length = 120
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 73/122 (59%), Gaps = 13/122 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + +++++E+S+++ D D LS++ +++DV V+ DL+ KVY
Sbjct: 5 RAGRINEEVKKEVSNIIHNDI-------------KDPRLSAMVSVTDVNVTKDLKYAKVY 51
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VS+FG+++ KE ++ LKS ++R ++GRR+KLR TPE+ D S ERG + +L
Sbjct: 52 VSIFGNEKAKEESLEALKSSVGFIRKEVGRRVKLRNTPEVIIEVDNSIERGMHIDELLHS 111
Query: 189 IK 190
IK
Sbjct: 112 IK 113
>sp|A5I4J2|RBFA_CLOBH Ribosome-binding factor A OS=Clostridium botulinum (strain Hall /
ATCC 3502 / NCTC 13319 / Type A) GN=rbfA PE=3 SV=1
Length = 120
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 73/122 (59%), Gaps = 13/122 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + +++++E+S+++ D D LS++ +++DV V+ DL+ KVY
Sbjct: 5 RAGRINEEVKKEVSNIIHNDI-------------KDPRLSAMVSVTDVNVTKDLKYAKVY 51
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VS+FG+++ KE ++ LKS ++R ++GRR+KLR TPE+ D S ERG + +L
Sbjct: 52 VSIFGNEKAKEESLEALKSSVGFIRKEVGRRVKLRNTPEVIIEVDNSIERGMHIDELLHS 111
Query: 189 IK 190
IK
Sbjct: 112 IK 113
>sp|A7FVZ2|RBFA_CLOB1 Ribosome-binding factor A OS=Clostridium botulinum (strain ATCC
19397 / Type A) GN=rbfA PE=3 SV=1
Length = 120
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 73/122 (59%), Gaps = 13/122 (10%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + +++++E+S+++ D D LS++ +++DV V+ DL+ KVY
Sbjct: 5 RAGRINEEVKKEVSNIIHNDI-------------KDPRLSAMVSVTDVNVTKDLKYAKVY 51
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
VS+FG+++ KE ++ LKS ++R ++GRR+KLR TPE+ D S ERG + +L
Sbjct: 52 VSIFGNEKAKEESLEALKSSVGFIRKEVGRRVKLRNTPEVIIEVDNSIERGMHIDELLHS 111
Query: 189 IK 190
IK
Sbjct: 112 IK 113
>sp|Q8EQT9|RBFA_OCEIH Ribosome-binding factor A OS=Oceanobacillus iheyensis (strain DSM
14371 / JCM 11309 / KCTC 3954 / HTE831) GN=rbfA PE=3
SV=1
Length = 113
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 54/78 (69%)
Query: 109 SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEI 168
T++DVEV+ DLQ KVY+SV GD++ K+ + GL ++RS++G R++LR TPEI
Sbjct: 31 GFVTVTDVEVTGDLQQAKVYISVLGDEKKKQDTLLGLSKAKGFIRSEIGNRIRLRKTPEI 90
Query: 169 RFIEDESFERGSRVIAIL 186
F DE+ E+G+R+ IL
Sbjct: 91 TFEFDEALEQGNRIETIL 108
>sp|A5D2S1|RBFA_PELTS Ribosome-binding factor A OS=Pelotomaculum thermopropionicum
(strain DSM 13744 / JCM 10971 / SI) GN=rbfA PE=3 SV=1
Length = 119
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 72/122 (59%), Gaps = 14/122 (11%)
Query: 69 RVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY 128
R + VA+ I++E+SDML + L + +G TI+ VEVS DL+ +Y
Sbjct: 4 RSERVAEAIKKEVSDMLRNE-------LKDPRIG-------FVTITSVEVSKDLRYANIY 49
Query: 129 VSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 188
SVFG ++ I LK ++R +LG+R++LR TPEI F D+S RGSRV+A+++
Sbjct: 50 ASVFGSPDDQKETIEALKKAQGFIRGELGKRIRLRYTPEITFKLDQSIGRGSRVLALMEE 109
Query: 189 IK 190
++
Sbjct: 110 VR 111
>sp|Q8RA38|RBFA_THETN Ribosome-binding factor A OS=Thermoanaerobacter tengcongensis
(strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4)
GN=rbfA PE=3 SV=1
Length = 122
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 70/114 (61%), Gaps = 13/114 (11%)
Query: 73 VAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVF 132
+++++++E+S M+L + D + ++ +I+D+EV+ DL+ KVYVS++
Sbjct: 11 LSEELKKEISKMILEEI-------------KDPRIKAMVSITDIEVTKDLRYAKVYVSIY 57
Query: 133 GDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 186
G + K GLKS A Y+R ++GRR+K+R TPEI F D S E G+++ IL
Sbjct: 58 GSEEEKRETFEGLKSAAGYIRHEIGRRIKMRYTPEIIFELDHSIEYGAKISEIL 111
>sp|Q46HR0|RBFA_PROMT Ribosome-binding factor A OS=Prochlorococcus marinus (strain
NATL2A) GN=rbfA PE=3 SV=1
Length = 123
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 83/132 (62%), Gaps = 12/132 (9%)
Query: 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQ 123
MAN RRV+ +A ++RE+S++L+ + +R ++ TI+ VEVS DLQ
Sbjct: 1 MANSRRVEKLAALLKREVSELLVN------------GIRDERIHQAMITITSVEVSGDLQ 48
Query: 124 VVKVYVSVFGDDRGKEVAIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVI 183
K+++S+FG+++ K+ + GL+ ++R++L +R+++R +PE+ F D+ +G V+
Sbjct: 49 HAKIFISLFGEEKKKDEVLVGLEEAKGFIRAELAQRLQMRRSPELVFKIDKGMTKGPAVL 108
Query: 184 AILDRIKAEKEA 195
+L+ ++ E+++
Sbjct: 109 DLLNALELERKS 120
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,060,922
Number of Sequences: 539616
Number of extensions: 3063341
Number of successful extensions: 14725
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 151
Number of HSP's that attempted gapping in prelim test: 13662
Number of HSP's gapped (non-prelim): 787
length of query: 229
length of database: 191,569,459
effective HSP length: 113
effective length of query: 116
effective length of database: 130,592,851
effective search space: 15148770716
effective search space used: 15148770716
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)