Query 027059
Match_columns 229
No_of_seqs 117 out of 1156
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 06:40:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027059.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027059hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jos_A RBFA, ribosome-binding 100.0 3.7E-34 1.3E-38 230.9 10.3 117 64-194 1-120 (128)
2 1pa4_A Probable ribosome-bindi 100.0 6E-34 2.1E-38 226.1 2.1 114 64-193 1-114 (116)
3 2e7g_A Putative ribosome-bindi 100.0 8.8E-33 3E-37 223.0 0.7 113 66-191 11-124 (129)
4 2kzf_A RBFA, ribosome-binding 100.0 2.8E-31 9.6E-36 207.8 8.8 102 64-180 3-105 (106)
5 2dyj_A Ribosome-binding factor 100.0 4.3E-29 1.5E-33 192.3 11.8 92 68-177 3-94 (95)
6 4g7x_B TOLA protein; membrane, 40.4 49 0.0017 26.2 5.5 74 68-150 39-114 (138)
7 3qmx_A Glutaredoxin A, glutare 32.6 75 0.0026 22.7 5.0 65 120-187 13-89 (99)
8 2rrl_A FLIK, flagellar HOOK-le 29.4 2E+02 0.0068 23.7 7.6 20 140-159 122-141 (169)
9 1t1v_A SH3BGRL3, SH3 domain-bi 23.5 1.8E+02 0.006 20.0 5.5 63 124-187 3-82 (93)
10 2wul_A Glutaredoxin related pr 23.4 55 0.0019 25.1 3.0 35 152-187 64-98 (118)
11 1ego_A Glutaredoxin; electron 23.1 33 0.0011 22.6 1.5 32 155-187 47-80 (85)
12 3v4g_A Arginine repressor; vib 22.2 5.7 0.00019 33.4 -3.2 23 171-193 121-143 (180)
13 2ia7_A Tail lysozyme, putative 21.1 1.5E+02 0.005 22.5 5.0 32 71-122 69-101 (134)
14 1xhj_A Nitrogen fixation prote 20.1 1.5E+02 0.005 21.8 4.6 45 64-134 3-47 (88)
No 1
>1jos_A RBFA, ribosome-binding factor A; RNA binding protein, structure 2 function project, S2F, structural genomics; 1.70A {Haemophilus influenzae} SCOP: d.52.7.1 PDB: 1kkg_A
Probab=100.00 E-value=3.7e-34 Score=230.92 Aligned_cols=117 Identities=38% Similarity=0.628 Sum_probs=91.4
Q ss_pred CCC-hHHHHHHHHHHHHHHHHHHhcChhhhhhhchhhhcccccCCCCceEEEEEEEcCCcceEEEEEEecC--CchhHHH
Q 027059 64 MAN-PRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVFG--DDRGKEV 140 (229)
Q Consensus 64 M~~-~~R~~RVas~IqreLS~iL~~Dp~l~~~i~~~~~~g~Dp~l~~lVTVT~VevS~DLs~AKVYvSi~g--~~~~~~~ 140 (229)
|+. ..|+.||+++|+++|+++|+++. +||+++ +||||+|+||+||++||||||++| ++.+.+.
T Consensus 1 M~~~~~R~~Rv~~~i~~~ls~il~~ei-------------kDprl~-~vtVt~V~vS~Dl~~AkVyvs~~g~~~~~~~~~ 66 (128)
T 1jos_A 1 MAREFKRSDRVAQEIQKEIAVILQREV-------------KDPRIG-MVTVSDVEVSSDLSYAKIFVTFLFDHDEMAIEQ 66 (128)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHC-------------CCTTTC-CEEEEEEEECTTSCEEEEEEEESCCSCHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHc-------------cCCccC-ceEEeEEEECCCCCEEEEEEEeCCCCchhhHHH
Confidence 664 35999999999999999997531 478875 799999999999999999999998 6667788
Q ss_pred HHHHHHHhhHHHHHHHHhccCCcccceEEEEEcCchhHHHHHHHHHHHHHHhHh
Q 027059 141 AIAGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRIKAEKE 194 (229)
Q Consensus 141 vl~aL~~aag~IR~~LakrL~lR~vPeL~Fv~D~S~E~a~rId~LLd~i~~e~~ 194 (229)
++++|++++||||++||++++||++|+|+|++|++++++.+|++||++++++++
T Consensus 67 ~~~~L~~a~g~iR~~l~~~l~lr~~PeL~F~~D~s~e~~~~i~~Ll~~~~~~~~ 120 (128)
T 1jos_A 67 GMKGLEKASPYIRSLLGKAMRLRIVPEIRFIYDQSLVEGMRMSNLVTNVVREDE 120 (128)
T ss_dssp HHHHHHHTHHHHHHHHHHHHCCSSCCEEEEEECCCCCCCC--------------
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcCCeEEEEEcCcHHHHHHHHHHHHHHHhcch
Confidence 999999999999999999999999999999999999999999999999987654
No 2
>1pa4_A Probable ribosome-binding factor A; structural genomics, distant homology, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Mycoplasma pneumoniae} SCOP: d.52.7.1
Probab=99.98 E-value=6e-34 Score=226.10 Aligned_cols=114 Identities=18% Similarity=0.359 Sum_probs=89.0
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhcChhhhhhhchhhhcccccCCCCceEEEEEEEcCCcceEEEEEEecCCchhHHHHHH
Q 027059 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIA 143 (229)
Q Consensus 64 M~~~~R~~RVas~IqreLS~iL~~Dp~l~~~i~~~~~~g~Dp~l~~lVTVT~VevS~DLs~AKVYvSi~g~~~~~~~vl~ 143 (229)
|+ ++|++||+++|+++||++|+++. +||+++ +||||+|+||+||++||||||++|++. .+.+++
T Consensus 1 M~-~~R~~Rv~~~i~~~ls~il~~ei-------------kDprl~-~vtVt~V~vs~Dl~~AkVyvs~~~~~~-~~~~~~ 64 (116)
T 1pa4_A 1 MA-SYKKERLENDIIRLINRTVIHEI-------------YNETVK-TGHVTHVKLSDDLLHVTVYLDCYNREQ-IDRVVG 64 (116)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCS-------------SSSCHH-HHCCSCCEEETTTTEEEECCCCSSSSS-HHHHHH
T ss_pred Cc-cHHHHHHHHHHHHHHHHHHHHhc-------------cCcccC-ceEEeEEEECCCCCEEEEEEEeCCchh-HHHHHH
Confidence 66 47999999999999999997532 377775 799999999999999999999998764 677999
Q ss_pred HHHHhhHHHHHHHHhccCCcccceEEEEEcCchhHHHHHHHHHHHHHHhH
Q 027059 144 GLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRIKAEK 193 (229)
Q Consensus 144 aL~~aag~IR~~LakrL~lR~vPeL~Fv~D~S~E~a~rId~LLd~i~~e~ 193 (229)
+|++|+||||++||++++||++|+|+|++|+|++++.+|++||+++++++
T Consensus 65 ~L~~a~g~iR~~l~~~l~lr~~PeL~F~~D~s~e~~~~i~~Ll~~~~~~~ 114 (116)
T 1pa4_A 65 AFNQAKGVFSRVLAHNLYLAKAVQIHFVKDKAIDNAMRIESIINSLKKSK 114 (116)
T ss_dssp HHHHTHHHHHHHHHTTCCCGGGCCCEECSSSTTSSCC-------------
T ss_pred HHHHhHHHHHHHHHhhcCCccCCeEEEEECCcHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999987653
No 3
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=99.97 E-value=8.8e-33 Score=222.97 Aligned_cols=113 Identities=19% Similarity=0.243 Sum_probs=98.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHhcChhhhhhhchhhhcccccCCC-CceEEEEEEEcCCcceEEEEEEecCCchhHHHHHHH
Q 027059 66 NPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLS-SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAG 144 (229)
Q Consensus 66 ~~~R~~RVas~IqreLS~iL~~Dp~l~~~i~~~~~~g~Dp~l~-~lVTVT~VevS~DLs~AKVYvSi~g~~~~~~~vl~a 144 (229)
+++|+.||+++|+++|+++|+++. .||++. .+||||+|+||+||++||||||+++++.+.+.++++
T Consensus 11 ~s~R~~Rv~~~i~~~ls~il~~~~-------------~dp~l~~~~vtVt~V~vS~Dl~~AkVyvs~~~~~~~~~~~~~~ 77 (129)
T 2e7g_A 11 DHARLRALNGLLYKALTDLLCTPE-------------VSQELYDLNVELSKVSLTPDFSACRAYWKTTLSAEQNAHMEAV 77 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCTT-------------TCHHHHHHTCCEEEEEECTTSCCEEEEECCCSCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcc-------------cCccccCCeeEEEEEEECCCCcEEEEEEEecCChhhHHHHHHH
Confidence 478999999999999999998531 123221 169999999999999999999966566666778999
Q ss_pred HHHhhHHHHHHHHhccCCcccceEEEEEcCchhHHHHHHHHHHHHHH
Q 027059 145 LKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRIKA 191 (229)
Q Consensus 145 L~~aag~IR~~LakrL~lR~vPeL~Fv~D~S~E~a~rId~LLd~i~~ 191 (229)
|++|+||||++||++++||++|+|+|++|++++++.+|++||++++.
T Consensus 78 L~~a~g~iR~~l~~~l~lr~~PeL~F~~D~s~e~~~~i~~LL~~~~~ 124 (129)
T 2e7g_A 78 LQRSAAHMRHLLMSQQTLRNVPPIVFVQDKGNAALAELDQLLAVADS 124 (129)
T ss_dssp HHHTHHHHHHHHHTCTTCSCCCCEEEEETTCCCCCCCCCCCSCCCCC
T ss_pred HHHhHHHHHHHHHhhcCCccCCeEEEEEcCCHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999988753
No 4
>2kzf_A RBFA, ribosome-binding factor A; JCSG, joint center structural genomics, PSI-biology, protein structure initiative; NMR {Thermotoga maritima}
Probab=99.97 E-value=2.8e-31 Score=207.79 Aligned_cols=102 Identities=29% Similarity=0.464 Sum_probs=93.0
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhcChhhhhhhchhhhcccccCCC-CceEEEEEEEcCCcceEEEEEEecCCchhHHHHH
Q 027059 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLS-SLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAI 142 (229)
Q Consensus 64 M~~~~R~~RVas~IqreLS~iL~~Dp~l~~~i~~~~~~g~Dp~l~-~lVTVT~VevS~DLs~AKVYvSi~g~~~~~~~vl 142 (229)
|+ ++|++||+++|+++|+++ +.+. +||++. ++||||+|+||+||++||||||++|++.+.+.++
T Consensus 3 M~-~~R~~Rv~~~i~~~ls~i-~~ei-------------kDprl~~~~vtVt~V~vs~Dl~~AkVyvs~~g~~~~~~~~~ 67 (106)
T 2kzf_A 3 NP-AYRKAMLESEIQKLLMEA-LQQL-------------RDPRLKKDFVTFSRVELSKDKRYADVYVSFLGTPEERKETV 67 (106)
T ss_dssp SC-CTTTHHHHHHHHHHHHHH-HHTT-------------CCSSCCGGGCCEEEEEECTTSCEEEEEECCSSCHHHHHHHH
T ss_pred cH-HHHHHHHHHHHHHHHHHH-HHhc-------------cCccccCCceEEEEEEECCCCCEEEEEEEeCCChhhHHHHH
Confidence 55 689999999999999999 6542 488884 5899999999999999999999999777778899
Q ss_pred HHHHHhhHHHHHHHHhccCCcccceEEEEEcCchhHHH
Q 027059 143 AGLKSKAKYVRSQLGRRMKLRLTPEIRFIEDESFERGS 180 (229)
Q Consensus 143 ~aL~~aag~IR~~LakrL~lR~vPeL~Fv~D~S~E~a~ 180 (229)
++|++|+||||++||++++||++|+|+|++|+++|++.
T Consensus 68 ~~L~~a~g~iR~~l~~~l~lr~~P~L~F~~D~s~e~~~ 105 (106)
T 2kzf_A 68 EILNRAKGFFRTFIAKNLRLYVAPEIRFYEDKGIEASV 105 (106)
T ss_dssp HHHHHHHHHHHHHHHHHSCSSSCCEEEEESSCCCTTCC
T ss_pred HHHHHhHHHHHHHHHhhcCCccCCeEEEEECCchhhhc
Confidence 99999999999999999999999999999999999874
No 5
>2dyj_A Ribosome-binding factor A; 16S rRNA processing, 17S RNA, KH domain; 1.84A {Thermus thermophilus} SCOP: d.52.7.1 PDB: 2r1c_A
Probab=99.96 E-value=4.3e-29 Score=192.31 Aligned_cols=92 Identities=26% Similarity=0.395 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcChhhhhhhchhhhcccccCCCCceEEEEEEEcCCcceEEEEEEecCCchhHHHHHHHHHH
Q 027059 68 RRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVFGDDRGKEVAIAGLKS 147 (229)
Q Consensus 68 ~R~~RVas~IqreLS~iL~~Dp~l~~~i~~~~~~g~Dp~l~~lVTVT~VevS~DLs~AKVYvSi~g~~~~~~~vl~aL~~ 147 (229)
+|++|++++|+++|+++| ++. +||+++ +||||+|+||+||++||||||++|+ .+.++++|++
T Consensus 3 ~R~~Rv~~~i~~~ls~il-~ei-------------~Dprl~-~vtVt~V~vs~Dl~~AkVyvs~~~~---~~~~~~~L~~ 64 (95)
T 2dyj_A 3 YGKAHLEAQLKRALAEEI-QAL-------------EDPRLF-LLTVEAVRLSKDGSVLSVYVEAFRE---EEGALRALSR 64 (95)
T ss_dssp -CHHHHHHHHHHHHHHHH-HTC-------------CCGGGT-TCEEEEEEECTTSSEEEEEEECSSC---HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH-HHh-------------cCcccC-cEEEEEEEECCCCCEEEEEEEeCCC---HHHHHHHHHH
Confidence 699999999999999999 542 478774 7999999999999999999999987 4678999999
Q ss_pred hhHHHHHHHHhccCCcccceEEEEEcCchh
Q 027059 148 KAKYVRSQLGRRMKLRLTPEIRFIEDESFE 177 (229)
Q Consensus 148 aag~IR~~LakrL~lR~vPeL~Fv~D~S~E 177 (229)
++||||++||++++||++|+|+|++|+++|
T Consensus 65 a~g~iR~~l~~~l~lr~~P~L~F~~D~s~e 94 (95)
T 2dyj_A 65 AERRLVAALARRVRMRRLPRLEFLPWRASP 94 (95)
T ss_dssp THHHHHHHHHTTSCCSSCCEEEEEEGGGCC
T ss_pred hHHHHHHHHHhhcCCccCCeEEEEEcCCCC
Confidence 999999999999999999999999999987
No 6
>4g7x_B TOLA protein; membrane, protein binding-protein binding complex; 1.44A {Vibrio cholerae}
Probab=40.41 E-value=49 Score=26.15 Aligned_cols=74 Identities=8% Similarity=0.011 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcChhhhhhhchhhhcccccCCCCceEEEEEEEcCCcceEEEE-EE-ecCCchhHHHHHHHH
Q 027059 68 RRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVY-VS-VFGDDRGKEVAIAGL 145 (229)
Q Consensus 68 ~R~~RVas~IqreLS~iL~~Dp~l~~~i~~~~~~g~Dp~l~~lVTVT~VevS~DLs~AKVY-vS-i~g~~~~~~~vl~aL 145 (229)
.|.+.+.+++.+..+.|-.. |.+.+- .++...++.....|++.||.....|. +. .-|+..--+.++.++
T Consensus 39 a~~~~~~sev~~Y~a~I~~~-------Iq~nw~--~p~~~~G~~c~v~I~L~p~G~v~~v~~v~~sSGd~~~d~aa~~Av 109 (138)
T 4g7x_B 39 ARQQFVTSEVGRYGAIYTQL-------IRQNLL--VEDSFRGKQCRVNLKLIPTGTGALLGSLTVLDGDSRLCAATKRAV 109 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHCC--CCGGGTTCCEEEEEEEEEETTEEEEEEEEEEEECHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHH-------HHHhcC--CCCccCCCEEEEEEEEcCCCCEEEEEEEeecCCCHHHHHHHHHHH
Confidence 46667766666555444321 111110 12333456778899999999987663 33 234543334567777
Q ss_pred HHhhH
Q 027059 146 KSKAK 150 (229)
Q Consensus 146 ~~aag 150 (229)
.++..
T Consensus 110 ~~a~~ 114 (138)
T 4g7x_B 110 AQVNS 114 (138)
T ss_dssp HTCCC
T ss_pred HHcCC
Confidence 77754
No 7
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=32.64 E-value=75 Score=22.69 Aligned_cols=65 Identities=25% Similarity=0.229 Sum_probs=37.3
Q ss_pred CCcceEEEEEEecCCchhHHHHHHHHHHh-----------hHHHHHHHHhcc-CCcccceEEEEEcCchhHHHHHHHHHH
Q 027059 120 ADLQVVKVYVSVFGDDRGKEVAIAGLKSK-----------AKYVRSQLGRRM-KLRLTPEIRFIEDESFERGSRVIAILD 187 (229)
Q Consensus 120 ~DLs~AKVYvSi~g~~~~~~~vl~aL~~a-----------ag~IR~~LakrL-~lR~vPeL~Fv~D~S~E~a~rId~LLd 187 (229)
.+....+||......... .+.+.|++. ....+..|.+.. +.+.+|.+ |+=++.+--...+.++++
T Consensus 13 ~~~~~v~vy~~~~Cp~C~--~ak~~L~~~~i~y~~idI~~~~~~~~~l~~~~~g~~~vP~i-fi~g~~igG~d~l~~~~~ 89 (99)
T 3qmx_A 13 AVSAKIEIYTWSTCPFCM--RALALLKRKGVEFQEYCIDGDNEAREAMAARANGKRSLPQI-FIDDQHIGGCDDIYALDG 89 (99)
T ss_dssp CCCCCEEEEECTTCHHHH--HHHHHHHHHTCCCEEEECTTCHHHHHHHHHHTTTCCCSCEE-EETTEEEESHHHHHHHHH
T ss_pred cCCCCEEEEEcCCChhHH--HHHHHHHHCCCCCEEEEcCCCHHHHHHHHHHhCCCCCCCEE-EECCEEEeChHHHHHHHH
Confidence 344566677766544332 233344332 245667777777 88999988 665555555555555544
No 8
>2rrl_A FLIK, flagellar HOOK-length control protein; FLHB, bacterial flagella motor, P transport; NMR {Salmonella typhimurium}
Probab=29.39 E-value=2e+02 Score=23.67 Aligned_cols=20 Identities=25% Similarity=0.300 Sum_probs=17.4
Q ss_pred HHHHHHHHhhHHHHHHHHhc
Q 027059 140 VAIAGLKSKAKYVRSQLGRR 159 (229)
Q Consensus 140 ~vl~aL~~aag~IR~~Lakr 159 (229)
.+.++|+.+...||..|.+.
T Consensus 122 ~vReaLe~~lp~LRe~La~q 141 (169)
T 2rrl_A 122 HVRAALEAALPMLRTQLAES 141 (169)
T ss_dssp HHHHHHHHTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 47789999999999999764
No 9
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=23.50 E-value=1.8e+02 Score=19.99 Aligned_cols=63 Identities=13% Similarity=0.150 Sum_probs=38.0
Q ss_pred eEEEEEEecCCchh----HHHHHHHHHHh-----------hHHHHHHHHhccC--CcccceEEEEEcCchhHHHHHHHHH
Q 027059 124 VVKVYVSVFGDDRG----KEVAIAGLKSK-----------AKYVRSQLGRRMK--LRLTPEIRFIEDESFERGSRVIAIL 186 (229)
Q Consensus 124 ~AKVYvSi~g~~~~----~~~vl~aL~~a-----------ag~IR~~LakrL~--lR~vPeL~Fv~D~S~E~a~rId~LL 186 (229)
...||.+......+ ...+.+.|++. ....|.+|.++.+ .+.+|.+ |+=++.+--...+.++.
T Consensus 3 ~v~ly~~~~C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~g~~~~~vP~i-fi~g~~igG~d~l~~l~ 81 (93)
T 1t1v_A 3 GLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQI-VNGNHYCGDYELFVEAV 81 (93)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEE-EETTEEEEEHHHHHHHH
T ss_pred CEEEEEcCCCCCchhhHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCCCCCEE-EECCEEEeCHHHHHHHH
Confidence 35677766554431 13355666652 3467778888888 6799987 66555555555555554
Q ss_pred H
Q 027059 187 D 187 (229)
Q Consensus 187 d 187 (229)
.
T Consensus 82 ~ 82 (93)
T 1t1v_A 82 E 82 (93)
T ss_dssp H
T ss_pred h
Confidence 3
No 10
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=23.44 E-value=55 Score=25.08 Aligned_cols=35 Identities=9% Similarity=0.227 Sum_probs=24.1
Q ss_pred HHHHHHhccCCcccceEEEEEcCchhHHHHHHHHHH
Q 027059 152 VRSQLGRRMKLRLTPEIRFIEDESFERGSRVIAILD 187 (229)
Q Consensus 152 IR~~LakrL~lR~vPeL~Fv~D~S~E~a~rId~LLd 187 (229)
+|..|.+.-+++.+|+| |+-++-+-=.+.+.+|..
T Consensus 64 ~r~~l~~~sg~~TvPqI-FI~g~~IGG~Ddl~~l~~ 98 (118)
T 2wul_A 64 LRQGIKDYSNWPTIPQV-YLNGEFVGGCDILLQMHQ 98 (118)
T ss_dssp HHHHHHHHHTCCSSCEE-EETTEEEECHHHHHHHHH
T ss_pred HHHHHHHhccCCCCCeE-eECCEEECCHHHHHHHHH
Confidence 56666666789999999 887776655555555443
No 11
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Probab=23.11 E-value=33 Score=22.65 Aligned_cols=32 Identities=16% Similarity=0.359 Sum_probs=19.1
Q ss_pred HHHhccC--CcccceEEEEEcCchhHHHHHHHHHH
Q 027059 155 QLGRRMK--LRLTPEIRFIEDESFERGSRVIAILD 187 (229)
Q Consensus 155 ~LakrL~--lR~vPeL~Fv~D~S~E~a~rId~LLd 187 (229)
.|.++.+ .+.+|.+ |+-++.+.....+.++++
T Consensus 47 ~l~~~~~~~~~~vP~i-~~~g~~i~~~~~l~~~~~ 80 (85)
T 1ego_A 47 DLQQKAGKPVETVPQI-FVDQQHIGGYTDFAAWVK 80 (85)
T ss_dssp HHHHHTCCCSCCSCEE-EETTEEEESSHHHHHHHH
T ss_pred HHHHHhCCCCceeCeE-EECCEEEECHHHHHHHHH
Confidence 4556666 8999998 654444444444544443
No 12
>3v4g_A Arginine repressor; vibrio vulnificus CMCP6, virulence, type secretion system, center for structural genomics of infecti diseases, csgid; 1.60A {Vibrio vulnificus} PDB: 1aoy_A
Probab=22.16 E-value=5.7 Score=33.41 Aligned_cols=23 Identities=9% Similarity=0.144 Sum_probs=16.4
Q ss_pred EEcCchhHHHHHHHHHHHHHHhH
Q 027059 171 IEDESFERGSRVIAILDRIKAEK 193 (229)
Q Consensus 171 v~D~S~E~a~rId~LLd~i~~e~ 193 (229)
++-...-.|.-|..+||.+..++
T Consensus 121 VIkT~PG~A~~vA~~ID~~~~~e 143 (180)
T 3v4g_A 121 VIHTGPGAAQLIARMLDSLGKSE 143 (180)
T ss_dssp EEEESTTCHHHHHHHHHHHCGGG
T ss_pred EEEeCCCcHHHHHHHHHhCCCCC
Confidence 45566678888999998875443
No 13
>2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
Probab=21.12 E-value=1.5e+02 Score=22.50 Aligned_cols=32 Identities=16% Similarity=0.189 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHhc-ChhhhhhhchhhhcccccCCCCceEEEEEEEcCCc
Q 027059 71 KMVAKQIQRELSDMLLT-DKVLQFAVLPEAALGADRYLSSLTTISDVEVSADL 122 (229)
Q Consensus 71 ~RVas~IqreLS~iL~~-Dp~l~~~i~~~~~~g~Dp~l~~lVTVT~VevS~DL 122 (229)
..+..+|+++|.++|.+ +|+ +.+++|+++++-
T Consensus 69 ~~~~~~i~~~i~~al~~~EPR--------------------i~~~~V~v~~~~ 101 (134)
T 2ia7_A 69 TTTLGLIENEVKEALILWEPR--------------------IELLSVTASPRE 101 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT--------------------EEEEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHhCCC--------------------eEEEEEEEeecC
Confidence 45677888888888875 553 457788887753
No 14
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=20.07 E-value=1.5e+02 Score=21.82 Aligned_cols=45 Identities=38% Similarity=0.479 Sum_probs=29.2
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhcChhhhhhhchhhhcccccCCCCceEEEEEEEcCCcceEEEEEEecCC
Q 027059 64 MANPRRVKMVAKQIQRELSDMLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVFGD 134 (229)
Q Consensus 64 M~~~~R~~RVas~IqreLS~iL~~Dp~l~~~i~~~~~~g~Dp~l~~lVTVT~VevS~DLs~AKVYvSi~g~ 134 (229)
|++....+++.+.|.+ |.-.|+.| ++.|.+.+|+ | -.||+...|.
T Consensus 3 ~t~~~~~~~I~~~L~~-IRP~L~~d-------------------GGdvelv~v~---~---g~V~V~L~Ga 47 (88)
T 1xhj_A 3 TENPTMFDQVAEVIER-LRPFLLRD-------------------GGDCTLVDVE---D---GIVKLQLHGA 47 (88)
T ss_dssp CCCSCHHHHHHHHHHH-HHHHHHHH-------------------SCEEEEEECC---S---SEEEEEEESS
T ss_pred CChHHHHHHHHHHHHH-hcHHHHhc-------------------CCeEEEEEEE---C---CEEEEEEeec
Confidence 6666677777777765 66666532 3568887775 3 2788877653
Done!