BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027060
(229 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C8U|A Chain A, Crystal Structure Of Putative Fructose Transport System
Kinase (Yp_612366.1) From Silicibacter Sp. Tm1040 At
1.95 A Resolution
Length = 208
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 8/128 (6%)
Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRIN------KIWPQKASSFDSQ--DPKEAHARRGAPW 158
+ +V L+G PG+GKSTL+ + ++ ++ P D++ +P+ R+GAP
Sbjct: 22 RQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPXDGFHLDNRLLEPRGLLPRKGAPE 81
Query: 159 TFXXXXXXXXXXXXXXQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVW 218
TF Q V P FD + VG + +V I++GNYL D W
Sbjct: 82 TFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW 141
Query: 219 KDVSSMFD 226
+D+++++D
Sbjct: 142 RDLTAIWD 149
>pdb|2GA8|A Chain A, Crystal Structure Of Yfh7 From Saccharomyces Cerevisiae: A
Putative P-Loop Containing Kinase With A Circular
Permutation.
pdb|2GAA|A Chain A, Crystal Structure Of Yfh7 From Saccharomyces Cerevisiae: A
Putative P-Loop Containing Kinase With A Circular
Permutation
Length = 359
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 37/106 (34%), Gaps = 29/106 (27%)
Query: 145 QDPKEAHARRGAPWTFXXXXXXXXXXXXXXQG---------------------------- 176
+DP+ AH RRG+P TF
Sbjct: 175 KDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLXKVSSHHKFYSTSSVFEKLSKTFSQTI 234
Query: 177 -SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV 221
++ P F+H + DP D + ++VI++G YL D WK +
Sbjct: 235 PDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYDQENWKKI 280
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDP 147
N + V L G PG+GKST+A E+ + IN +K +F S+ P
Sbjct: 22 NYRVCVILVGSPGSGKSTIAEELXQIIN----EKYHTFLSEHP 60
>pdb|2V3C|C Chain C, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
pdb|2V3C|D Chain D, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
Length = 432
Score = 33.9 bits (76), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 21/95 (22%)
Query: 56 RSLVQNKTSLKVLCSQRREIPVVEARCMDE---------------VYDALAQRLLPTSAL 100
R+L+Q ++K++ +EI E R ++E VY+ L +LL A
Sbjct: 35 RALIQADVNVKLVLKMSKEI---ERRALEEKTPKGLSKKEHIIKIVYEELV-KLLGEEAK 90
Query: 101 ASNVNVK--HIVGLAGPPGAGKSTLAAEVVRRINK 133
+N K +++ L G G+GK+T AA++ R I K
Sbjct: 91 KLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQK 125
>pdb|3NDB|B Chain B, Crystal Structure Of A Signal Sequence Bound To The Signal
Recognition Particle
Length = 454
Score = 33.9 bits (76), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 21/95 (22%)
Query: 56 RSLVQNKTSLKVLCSQRREIPVVEARCMDE---------------VYDALAQRLLPTSAL 100
R+L+Q ++K++ +EI E R ++E VY+ L +LL A
Sbjct: 35 RALIQADVNVKLVLKMSKEI---ERRALEEKTPKGLSKKEHIIKIVYEELV-KLLGEEAK 90
Query: 101 ASNVNVK--HIVGLAGPPGAGKSTLAAEVVRRINK 133
+N K +++ L G G+GK+T AA++ R I K
Sbjct: 91 KLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQK 125
>pdb|2WWW|A Chain A, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|B Chain B, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|C Chain C, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|D Chain D, Crystal Structure Of Methylmalonic Acidemia Type A Protein
Length = 349
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/14 (85%), Positives = 13/14 (92%)
Query: 110 VGLAGPPGAGKSTL 123
VGL+GPPGAGKST
Sbjct: 77 VGLSGPPGAGKSTF 90
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 19/67 (28%)
Query: 84 DEVYDALAQRLLPTSALASNVNVKHIVG------------------LAGPPGAGKSTLAA 125
D + LA R+ P + LA + +H++ L GPPG GK+TLA
Sbjct: 10 DNTFQPLAARMRPEN-LAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAE 68
Query: 126 EVVRRIN 132
+ R N
Sbjct: 69 VIARYAN 75
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 109 IVGLAGPPGAGKSTLAAEVVRRINK 133
I+ LAGPPG GK++LA + + + +
Sbjct: 110 ILCLAGPPGVGKTSLAKSIAKSLGR 134
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 81 RCMDEVY--DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129
R +DEV D + QRL N+ H++ +GPPG GK+ A + R
Sbjct: 14 RTLDEVVGQDEVIQRL---KGYVERKNIPHLL-FSGPPGTGKTATAIALAR 60
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 81 RCMDEVY--DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129
R +DEV D + QRL N+ H++ +GPPG GK+ A + R
Sbjct: 14 RTLDEVVGQDEVIQRL---KGYVERKNIPHLL-FSGPPGTGKTATAIALAR 60
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
Length = 173
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 10/56 (17%)
Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAP--WTF 160
K + L GP GAGKST+ ++ +++N + +DS +E R GA W F
Sbjct: 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEF------YDS--DQEIEKRTGADVGWVF 51
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/15 (80%), Positives = 13/15 (86%)
Query: 110 VGLAGPPGAGKSTLA 124
V LAGPPG GK+TLA
Sbjct: 54 VLLAGPPGLGKTTLA 68
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/15 (80%), Positives = 13/15 (86%)
Query: 110 VGLAGPPGAGKSTLA 124
V LAGPPG GK+TLA
Sbjct: 54 VLLAGPPGLGKTTLA 68
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/15 (80%), Positives = 13/15 (86%)
Query: 110 VGLAGPPGAGKSTLA 124
V LAGPPG GK+TLA
Sbjct: 54 VLLAGPPGLGKTTLA 68
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/15 (80%), Positives = 13/15 (86%)
Query: 110 VGLAGPPGAGKSTLA 124
V LAGPPG GK+TLA
Sbjct: 54 VLLAGPPGLGKTTLA 68
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 100 LASNVNVKHIVGLAGPPGAGKSTLAAEV 127
L+ V I+ L GP GAGKSTL A +
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARM 46
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/15 (80%), Positives = 13/15 (86%)
Query: 110 VGLAGPPGAGKSTLA 124
V LAGPPG GK+TLA
Sbjct: 54 VLLAGPPGLGKTTLA 68
>pdb|1W5S|A Chain A, Structure Of The Aeropyrum Pernix Orc2 Protein (Adp Form)
pdb|1W5S|B Chain B, Structure Of The Aeropyrum Pernix Orc2 Protein (Adp Form)
pdb|1W5T|A Chain A, Structure Of The Aeropyrum Pernix Orc2 Protein (Adpnp-Adp
Complexes)
pdb|1W5T|B Chain B, Structure Of The Aeropyrum Pernix Orc2 Protein (Adpnp-Adp
Complexes)
pdb|1W5T|C Chain C, Structure Of The Aeropyrum Pernix Orc2 Protein (Adpnp-Adp
Complexes)
Length = 412
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Query: 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK 133
EA + +Y RLL + L S+VN+ I G G G GK+TLA V+R+++
Sbjct: 30 EAEALARIY---LNRLLSGAGL-SDVNM--IYGSIGRVGIGKTTLAKFTVKRVSE 78
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 100 LASNVNVKHIVGLAGPPGAGKSTLAAEV 127
L+ V I+ L GP GAGKSTL A +
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARM 46
>pdb|1UDX|A Chain A, Crystal Structure Of The Conserved Protein Tt1381 From
Thermus Thermophilus Hb8
Length = 416
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 110 VGLAGPPGAGKSTLAAEVVRRINKIWP 136
VGL G P AGKS+L A + R KI P
Sbjct: 160 VGLVGYPNAGKSSLLAAMTRAHPKIAP 186
>pdb|3DL7|A Chain A, Aged Form Of Mouse Acetylcholinesterase Inhibited By
Tabun- Update
Length = 538
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWT 159
++ I GL P +T +R+ K W A + D DP+++ + + P+T
Sbjct: 445 EIEFIFGLPLDPSLNYTTEERIFAQRLMKYWTNFARTGDPNDPRDSKSPQWPPYT 499
>pdb|2JGE|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Non-Aged Methamidophos
Length = 533
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWT 159
++ I GL P +T +R+ K W A + D DP+++ + + P+T
Sbjct: 441 EIEFIFGLPLDPSLNYTTEERIFAQRLMKYWTNFARTGDPNDPRDSKSPQWPPYT 495
>pdb|2JGJ|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Aged Methamidophos
Length = 535
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWT 159
++ I GL P +T +R+ K W A + D DP+++ + + P+T
Sbjct: 441 EIEFIFGLPLDPSLNYTTEERIFAQRLMKYWTNFARTGDPNDPRDSKSPQWPPYT 495
>pdb|2JGE|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Non-Aged Methamidophos
pdb|2JGJ|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Aged Methamidophos
Length = 536
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWT 159
++ I GL P +T +R+ K W A + D DP+++ + + P+T
Sbjct: 444 EIEFIFGLPLDPSLNYTTEERIFAQRLMKYWTNFARTGDPNDPRDSKSPQWPPYT 498
>pdb|1KU6|A Chain A, Fasciculin 2-Mouse Acetylcholinesterase Complex
Length = 549
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWT 159
++ I GL P +T +R+ K W A + D DP+++ + + P+T
Sbjct: 450 EIEFIFGLPLDPSLNYTTEERIFAQRLMKYWTNFARTGDPNDPRDSKSPQWPPYT 504
>pdb|1C2B|A Chain A, Electrophorus Electricus Acetylcholinesterase
Length = 540
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWT 159
++ I GL P +T +R+ K W A + D DP+++ + + P+T
Sbjct: 447 EIEFIFGLPLDPSLNYTTEERIFAQRLMKYWTNFARTGDPNDPRDSKSPQWPPYT 501
>pdb|1N5M|A Chain A, Crystal Structure Of The Mouse
Acetylcholinesterase-Gallamine Complex
pdb|1N5M|B Chain B, Crystal Structure Of The Mouse
Acetylcholinesterase-Gallamine Complex
Length = 541
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWT 159
++ I GL P +T +R+ K W A + D DP+++ + + P+T
Sbjct: 450 EIEFIFGLPLDPSLNYTTEERIFAQRLMKYWTNFARTGDPNDPRDSKSPQWPPYT 504
>pdb|1MAH|A Chain A, Fasciculin2-Mouse Acetylcholinesterase Complex
pdb|1J06|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase In The Apo
Form
pdb|1J06|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase In The Apo
Form
pdb|1J07|A Chain A, Crystal Structure Of The Mouse
Acetylcholinesterase-Decidium Complex
pdb|1J07|B Chain B, Crystal Structure Of The Mouse
Acetylcholinesterase-Decidium Complex
pdb|1N5R|A Chain A, Crystal Structure Of The Mouse
Acetylcholinesterase-Propidium Complex
pdb|1N5R|B Chain B, Crystal Structure Of The Mouse
Acetylcholinesterase-Propidium Complex
pdb|2H9Y|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase Complexed
With M-(N,N, N-Trimethylammonio)trifluoroacetophenone
pdb|2H9Y|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase Complexed
With M-(N,N, N-Trimethylammonio)trifluoroacetophenone
pdb|2HA0|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase Complexed
With 4- Ketoamyltrimethylammonium
pdb|2HA0|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase Complexed
With 4- Ketoamyltrimethylammonium
pdb|2HA2|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase Complexed
With Succinylcholine
pdb|2HA2|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase Complexed
With Succinylcholine
pdb|2HA3|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase Complexed
With Choline
pdb|2HA3|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase Complexed
With Choline
pdb|2GYU|A Chain A, Crystal Structure Of Mus Musculus Acetylcholinesterase In
Complex With Hi-6
pdb|2GYU|B Chain B, Crystal Structure Of Mus Musculus Acetylcholinesterase In
Complex With Hi-6
pdb|2GYV|A Chain A, Crystal Structure Of Mus Musculus Acetylcholinesterase In
Complex With Ortho-7
pdb|2GYV|B Chain B, Crystal Structure Of Mus Musculus Acetylcholinesterase In
Complex With Ortho-7
pdb|2GYW|A Chain A, Crystal Structure Of Mus Musculus Acetylcholinesterase In
Complex With Obidoxime
pdb|2GYW|B Chain B, Crystal Structure Of Mus Musculus Acetylcholinesterase In
Complex With Obidoxime
pdb|2WLS|A Chain A, Crystal Structure Of Mus Musculus Acetylcholinesterase In
Complex With Amts13
pdb|2WLS|B Chain B, Crystal Structure Of Mus Musculus Acetylcholinesterase In
Complex With Amts13
pdb|4BC0|A Chain A, Structure Of Mouse Acetylcholinesterase Inhibited By Cbdp
( 12-h Soak): Cresyl-phosphoserine Adduct
pdb|4BC0|B Chain B, Structure Of Mouse Acetylcholinesterase Inhibited By Cbdp
( 12-h Soak): Cresyl-phosphoserine Adduct
pdb|4BC0|C Chain C, Structure Of Mouse Acetylcholinesterase Inhibited By Cbdp
( 12-h Soak): Cresyl-phosphoserine Adduct
pdb|4BC0|D Chain D, Structure Of Mouse Acetylcholinesterase Inhibited By Cbdp
( 12-h Soak): Cresyl-phosphoserine Adduct
pdb|4BC1|A Chain A, Structure Of Mouse Acetylcholinesterase Inhibited By Cbdp
( 30-min Soak): Cresyl-saligenin-phosphoserine Adduct
pdb|4BC1|B Chain B, Structure Of Mouse Acetylcholinesterase Inhibited By Cbdp
( 30-min Soak): Cresyl-saligenin-phosphoserine Adduct
pdb|4BC1|C Chain C, Structure Of Mouse Acetylcholinesterase Inhibited By Cbdp
( 30-min Soak): Cresyl-saligenin-phosphoserine Adduct
pdb|4BC1|D Chain D, Structure Of Mouse Acetylcholinesterase Inhibited By Cbdp
( 30-min Soak): Cresyl-saligenin-phosphoserine Adduct
Length = 543
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWT 159
++ I GL P +T +R+ K W A + D DP+++ + + P+T
Sbjct: 450 EIEFIFGLPLDPSLNYTTEERIFAQRLMKYWTNFARTGDPNDPRDSKSPQWPPYT 504
>pdb|1C2O|A Chain A, Electrophorus Electricus Acetylcholinesterase
pdb|1C2O|B Chain B, Electrophorus Electricus Acetylcholinesterase
pdb|1C2O|C Chain C, Electrophorus Electricus Acetylcholinesterase
pdb|1C2O|D Chain D, Electrophorus Electricus Acetylcholinesterase
Length = 539
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWT 159
++ I GL P +T +R+ K W A + D DP+++ + + P+T
Sbjct: 446 EIEFIFGLPLDPSLNYTTEERIFAQRLMKYWTNFARTGDPNDPRDSKSPQWPPYT 500
>pdb|4A16|A Chain A, Structure Of Mouse Acetylcholinesterase Complex With
Huprine Derivative
pdb|4A16|B Chain B, Structure Of Mouse Acetylcholinesterase Complex With
Huprine Derivative
pdb|4A16|C Chain C, Structure Of Mouse Acetylcholinesterase Complex With
Huprine Derivative
pdb|4A16|D Chain D, Structure Of Mouse Acetylcholinesterase Complex With
Huprine Derivative
Length = 545
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWT 159
++ I GL P +T +R+ K W A + D DP+++ + + P+T
Sbjct: 447 EIEFIFGLPLDPSLNYTTEERIFAQRLMKYWTNFARTGDPNDPRDSKSPQWPPYT 501
>pdb|1Q83|A Chain A, Crystal Structure Of The Mouse Acetylcholinesterase-Tz2pa6
Syn Complex
pdb|1Q83|B Chain B, Crystal Structure Of The Mouse Acetylcholinesterase-Tz2pa6
Syn Complex
pdb|1Q84|A Chain A, Crystal Structure Of The Mouse Acetylcholinesterase-Tz2pa6
Anti Complex
pdb|1Q84|B Chain B, Crystal Structure Of The Mouse Acetylcholinesterase-Tz2pa6
Anti Complex
Length = 580
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWT 159
++ I GL P +T +R+ K W A + D DP+++ + + P+T
Sbjct: 481 EIEFIFGLPLDPSLNYTTEERIFAQRLMKYWTNFARTGDPNDPRDSKSPQWPPYT 535
>pdb|2HA4|A Chain A, Crystal Structure Of Mutant S203a Of Mouse
Acetylcholinesterase Complexed With Acetylcholine
pdb|2HA4|B Chain B, Crystal Structure Of Mutant S203a Of Mouse
Acetylcholinesterase Complexed With Acetylcholine
pdb|2HA5|A Chain A, Crystal Structure Of Mutant S203a Of Acetylcholinesterase
Complexed With Acetylthiocholine
pdb|2HA5|B Chain B, Crystal Structure Of Mutant S203a Of Acetylcholinesterase
Complexed With Acetylthiocholine
pdb|2HA6|A Chain A, Crystal Structure Of Mutant S203a Of Mouse
Acetylcholinesterase Complexed With Succinylcholine
pdb|2HA6|B Chain B, Crystal Structure Of Mutant S203a Of Mouse
Acetylcholinesterase Complexed With Succinylcholine
pdb|2HA7|A Chain A, Crystal Structure Of Mutant S203a Of Mouse
Acetylcholinesterase Complexed With Butyrylthiocholine
pdb|2HA7|B Chain B, Crystal Structure Of Mutant S203a Of Mouse
Acetylcholinesterase Complexed With Butyrylthiocholine
Length = 543
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWT 159
++ I GL P +T +R+ K W A + D DP+++ + + P+T
Sbjct: 450 EIEFIFGLPLDPSLNYTTEERIFAQRLMKYWTNFARTGDPNDPRDSKSPQWPPYT 504
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 110 VGLAGPPGAGKSTLAAEVVRRINKIWP 136
V LAGPPG GK+ LA + + + P
Sbjct: 66 VLLAGPPGTGKTALALAIAQELGSKVP 92
>pdb|2XUD|A Chain A, Crystal Structure Of The Y337a Mutant Of Mouse
Acetylcholinesterase
pdb|2XUD|B Chain B, Crystal Structure Of The Y337a Mutant Of Mouse
Acetylcholinesterase
pdb|2XUH|A Chain A, Crystal Structure Of Mache-Y337a-Tz2pa6 Anti Complex (10
Mth)
pdb|2XUH|B Chain B, Crystal Structure Of Mache-Y337a-Tz2pa6 Anti Complex (10
Mth)
pdb|2XUI|A Chain A, Crystal Structure Of Mache-Y337a-Tz2pa6 Syn Complex (1 Wk)
pdb|2XUI|B Chain B, Crystal Structure Of Mache-Y337a-Tz2pa6 Syn Complex (1 Wk)
pdb|2XUJ|A Chain A, Crystal Structure Of Mache-Y337a-Tz2pa6 Syn Complex (1
Mth)
pdb|2XUJ|B Chain B, Crystal Structure Of Mache-Y337a-Tz2pa6 Syn Complex (1
Mth)
pdb|2XUK|A Chain A, Crystal Structure Of Mache-Y337a-Tz2pa6 Syn Complex (10
Mth)
pdb|2XUK|B Chain B, Crystal Structure Of Mache-Y337a-Tz2pa6 Syn Complex (10
Mth)
pdb|2XUO|A Chain A, Crystal Structure Of Mache-Y337a Mutant In Complex With
Soaked Tz2pa6 Anti Inhibitor
pdb|2XUO|B Chain B, Crystal Structure Of Mache-Y337a Mutant In Complex With
Soaked Tz2pa6 Anti Inhibitor
pdb|2XUP|A Chain A, Crystal Structure Of The Mache-Y337a Mutant In Complex
With Soaked Tz2pa6 Syn Inhibitor
pdb|2XUP|B Chain B, Crystal Structure Of The Mache-Y337a Mutant In Complex
With Soaked Tz2pa6 Syn Inhibitor
pdb|2XUQ|A Chain A, Crystal Structure Of The Mache-Y337a Mutant In Complex
With Soaked Tz2pa6 Anti-Syn Inhibitors
pdb|2XUQ|B Chain B, Crystal Structure Of The Mache-Y337a Mutant In Complex
With Soaked Tz2pa6 Anti-Syn Inhibitors
Length = 543
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWT 159
++ I GL P +T +R+ K W A + D DP+++ + + P+T
Sbjct: 450 EIEFIFGLPLDPSLNYTTEERIFAQRLMKYWTNFARTGDPNDPRDSKSPQWPPYT 504
>pdb|2JGF|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Non-Aged Fenamiphos
pdb|2JGF|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Non-Aged Fenamiphos
pdb|2JGI|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Non-Aged Diisopropyl Fluorophosphate (Dfp)
pdb|2JGI|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Non-Aged Diisopropyl Fluorophosphate (Dfp)
pdb|2JGK|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Aged Fenamiphos
pdb|2JGK|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Aged Fenamiphos
pdb|2JGL|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Aged Vx And Sarin
pdb|2JGL|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Aged Vx And Sarin
pdb|2JGM|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Aged Diisopropyl Fluorophosphate (Dfp)
pdb|2JGM|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Aged Diisopropyl Fluorophosphate (Dfp)
pdb|2JEZ|A Chain A, Mus Musculus Acetylcholinesterase In Complex With Tabun
And Hlo-7
pdb|2JEZ|B Chain B, Mus Musculus Acetylcholinesterase In Complex With Tabun
And Hlo-7
pdb|2JF0|A Chain A, Mus Musculus Acetylcholinesterase In Complex With Tabun
And Ortho-7
pdb|2JF0|B Chain B, Mus Musculus Acetylcholinesterase In Complex With Tabun
And Ortho-7
pdb|3DL4|A Chain A, Non-Aged Form Of Mouse Acetylcholinesterase Inhibited By
Tabun- Update
pdb|3DL4|B Chain B, Non-Aged Form Of Mouse Acetylcholinesterase Inhibited By
Tabun- Update
pdb|2WHP|A Chain A, Crystal Structure Of Acetylcholinesterase, Phosphonylated
By Sarin And In Complex With Hi-6
pdb|2WHQ|A Chain A, Crystal Structure Of Acetylcholinesterase, Phosphonylated
By Sarin (Aged) In Complex With Hi-6
pdb|2WHQ|B Chain B, Crystal Structure Of Acetylcholinesterase, Phosphonylated
By Sarin (Aged) In Complex With Hi-6
pdb|2WU3|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase In Complex
With Fenamiphos And Hi-6
pdb|2WU3|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase In Complex
With Fenamiphos And Hi-6
pdb|2WU4|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase In Complex
With Fenamiphos And Ortho-7
pdb|2WU4|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase In Complex
With Fenamiphos And Ortho-7
pdb|2Y2U|A Chain A, Nonaged Form Of Mouse Acetylcholinesterase Inhibited By
Vx-Update
pdb|2Y2U|B Chain B, Nonaged Form Of Mouse Acetylcholinesterase Inhibited By
Vx-Update
pdb|2Y2V|A Chain A, Nonaged Form Of Mouse Acetylcholinesterase Inhibited By
Sarin-Update
pdb|2Y2V|B Chain B, Nonaged Form Of Mouse Acetylcholinesterase Inhibited By
Sarin-Update
Length = 548
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWT 159
++ I GL P +T +R+ K W A + D DP+++ + + P+T
Sbjct: 450 EIEFIFGLPLDPSLNYTTEERIFAQRLMKYWTNFARTGDPNDPRDSKSPQWPPYT 504
>pdb|2C0P|A Chain A, Aged Form Of Mouse Acetylcholinesterase Inhibited By Tabun
pdb|2C0P|B Chain B, Aged Form Of Mouse Acetylcholinesterase Inhibited By Tabun
pdb|2C0Q|A Chain A, Non-Aged Form Of Mouse Acetylcholinesterase Inhibited By
Tabun
pdb|2C0Q|B Chain B, Non-Aged Form Of Mouse Acetylcholinesterase Inhibited By
Tabun
pdb|2JEY|A Chain A, Mus Musculus Acetylcholinesterase In Complex With Hlo-7
pdb|2JEY|B Chain B, Mus Musculus Acetylcholinesterase In Complex With Hlo-7
pdb|2WHR|A Chain A, Crystal Structure Of Acetylcholinesterase In Complex With
K027
pdb|2WHR|B Chain B, Crystal Structure Of Acetylcholinesterase In Complex With
K027
pdb|4A23|A Chain A, Mus Musculus Acetylcholinesterase In Complex With Racemic
C5685
pdb|4A23|B Chain B, Mus Musculus Acetylcholinesterase In Complex With Racemic
C5685
pdb|4ARA|A Chain A, Mus Musculus Acetylcholinesterase In Complex With
(r)-c5685 At 2.5 A Resolution.
pdb|4ARA|B Chain B, Mus Musculus Acetylcholinesterase In Complex With
(r)-c5685 At 2.5 A Resolution.
pdb|4ARB|A Chain A, Mus Musculus Acetylcholinesterase In Complex With
(s)-c5685 At 2.25 A Resolution.
pdb|4ARB|B Chain B, Mus Musculus Acetylcholinesterase In Complex With
(s)-c5685 At 2.25 A Resolution
Length = 548
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWT 159
++ I GL P +T +R+ K W A + D DP+++ + + P+T
Sbjct: 450 EIEFIFGLPLDPSLNYTTEERIFAQRLMKYWTNFARTGDPNDPRDSKSPQWPPYT 504
>pdb|1YE8|A Chain A, Crystal Structure Of Thep1 From The Hyperthermophile
Aquifex Aeolicus
Length = 178
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 112 LAGPPGAGKSTLAAEVVRRINK 133
+ G PG GK+TL ++V R+ K
Sbjct: 5 ITGEPGVGKTTLVKKIVERLGK 26
>pdb|2XUF|A Chain A, Crystal Structure Of Mache-Y337a-Tz2pa6 Anti Complex (1
Mth)
pdb|2XUF|B Chain B, Crystal Structure Of Mache-Y337a-Tz2pa6 Anti Complex (1
Mth)
pdb|2XUG|A Chain A, Crystal Structure Of Mache-Y337a-Tz2pa6 Anti Complex (1
Wk)
pdb|2XUG|B Chain B, Crystal Structure Of Mache-Y337a-Tz2pa6 Anti Complex (1
Wk)
Length = 544
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWT 159
++ I GL P +T +R+ K W A + D DP+++ + + P+T
Sbjct: 450 EIEFIFGLPLDPSLNYTTEERIFAQRLMKYWTNFARTGDPNDPRDSKSPQWPPYT 504
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129
++ AR +D YD ++++L + + N I+ AGP G GKST+ + + R
Sbjct: 1 MLSARHVDFAYDD-SEQILRDISFEAQPN--SIIAFAGPSGGGKSTIFSLLER 50
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 100 LASNVNVKHIVGLAGPPGAGKSTLAA 125
L+ V I+ L GP GAGKSTL A
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLA 44
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 100 LASNVNVKHIVGLAGPPGAGKSTLAA 125
L+ V I+ L GP GAGKSTL A
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLA 44
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 110 VGLAGPPGAGKSTLAAEVVRRINKIWP 136
V LAGPPG GK+ LA + + + P
Sbjct: 80 VLLAGPPGTGKTALALAIAQELGSKVP 106
>pdb|2XZL|A Chain A, Upf1-Rna Complex
Length = 802
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 112 LAGPPGAGKSTLAAEVVRRINKI 134
+ GPPG GK+ +A +V ++KI
Sbjct: 380 IQGPPGTGKTVTSATIVYHLSKI 402
>pdb|1MAA|A Chain A, Mouse Acetylcholinesterase Catalytic Domain, Glycosylated
Protein
pdb|1MAA|B Chain B, Mouse Acetylcholinesterase Catalytic Domain, Glycosylated
Protein
pdb|1MAA|C Chain C, Mouse Acetylcholinesterase Catalytic Domain, Glycosylated
Protein
pdb|1MAA|D Chain D, Mouse Acetylcholinesterase Catalytic Domain, Glycosylated
Protein
Length = 547
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWT 159
++ I GL P +T +R+ K W A + D DP++ + + P+T
Sbjct: 450 EIEFIFGLPLDPSLNYTTEERIFAQRLMKYWTNFARTGDPNDPRDRKSPQWPPYT 504
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,659,011
Number of Sequences: 62578
Number of extensions: 244850
Number of successful extensions: 970
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 921
Number of HSP's gapped (non-prelim): 54
length of query: 229
length of database: 14,973,337
effective HSP length: 95
effective length of query: 134
effective length of database: 9,028,427
effective search space: 1209809218
effective search space used: 1209809218
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)