Query 027060
Match_columns 229
No_of_seqs 388 out of 3130
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 04:24:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027060.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027060hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1116 TauB ABC-type nitrate/ 100.0 2.1E-29 4.5E-34 212.9 6.3 146 76-228 2-176 (248)
2 COG1126 GlnQ ABC-type polar am 100.0 4E-28 8.6E-33 200.9 10.8 145 76-227 1-181 (240)
3 COG3842 PotA ABC-type spermidi 99.9 2.2E-28 4.8E-33 217.6 6.8 135 75-216 3-163 (352)
4 COG3839 MalK ABC-type sugar tr 99.9 2.3E-28 5E-33 216.4 5.0 135 75-216 1-160 (338)
5 COG3638 ABC-type phosphate/pho 99.9 1.4E-26 3E-31 193.9 10.9 145 76-227 2-192 (258)
6 COG1125 OpuBA ABC-type proline 99.9 4.6E-27 9.9E-32 198.7 8.1 142 77-225 1-178 (309)
7 COG1136 SalX ABC-type antimicr 99.9 7.5E-27 1.6E-31 196.4 8.0 148 77-227 1-187 (226)
8 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 1.4E-26 3E-31 197.5 9.5 147 74-227 1-184 (254)
9 COG1120 FepC ABC-type cobalami 99.9 2.4E-26 5.2E-31 196.8 9.8 143 77-226 2-182 (258)
10 COG0411 LivG ABC-type branched 99.9 1.1E-26 2.4E-31 195.3 5.4 134 76-216 3-176 (250)
11 COG1118 CysA ABC-type sulfate/ 99.9 3.3E-26 7.1E-31 197.8 7.2 134 77-217 2-165 (345)
12 COG4555 NatA ABC-type Na+ tran 99.9 6.3E-26 1.4E-30 186.0 8.1 145 77-227 1-178 (245)
13 COG1131 CcmA ABC-type multidru 99.9 7.5E-26 1.6E-30 198.6 9.1 146 75-227 2-181 (293)
14 COG1135 AbcC ABC-type metal io 99.9 1.9E-25 4E-30 193.4 11.2 148 77-227 1-186 (339)
15 COG0410 LivF ABC-type branched 99.9 4.6E-26 1E-30 190.2 6.9 135 76-217 2-164 (237)
16 COG1127 Ttg2A ABC-type transpo 99.9 2.7E-25 5.8E-30 186.6 10.3 145 75-226 6-189 (263)
17 COG2884 FtsE Predicted ATPase 99.9 1.9E-25 4.1E-30 181.6 8.0 146 77-228 1-183 (223)
18 COG1117 PstB ABC-type phosphat 99.9 1.7E-24 3.7E-29 179.0 11.4 146 75-227 5-194 (253)
19 PRK13537 nodulation ABC transp 99.9 5.5E-25 1.2E-29 194.2 8.7 146 75-227 5-183 (306)
20 PRK13536 nodulation factor exp 99.9 7.8E-25 1.7E-29 195.9 8.0 147 74-227 38-217 (340)
21 TIGR03265 PhnT2 putative 2-ami 99.9 2.9E-24 6.4E-29 193.0 7.9 146 75-227 2-179 (353)
22 PRK11650 ugpC glycerol-3-phosp 99.9 3.4E-24 7.5E-29 192.8 7.9 96 75-177 1-102 (356)
23 PRK11432 fbpC ferric transport 99.9 3.4E-24 7.4E-29 192.4 7.8 96 75-177 4-104 (351)
24 COG3845 ABC-type uncharacteriz 99.9 9E-24 2E-28 192.1 10.2 136 75-217 2-168 (501)
25 COG1124 DppF ABC-type dipeptid 99.9 7.7E-24 1.7E-28 178.1 9.0 150 75-227 1-186 (252)
26 TIGR02314 ABC_MetN D-methionin 99.9 4.7E-24 1E-28 191.0 8.0 148 77-227 1-185 (343)
27 COG4152 ABC-type uncharacteriz 99.9 7.2E-24 1.6E-28 178.3 8.6 143 77-226 2-174 (300)
28 cd03213 ABCG_EPDR ABCG transpo 99.9 5.2E-24 1.1E-28 176.2 7.7 146 77-227 3-156 (194)
29 cd03229 ABC_Class3 This class 99.9 4.3E-24 9.3E-29 174.3 6.9 136 78-227 1-145 (178)
30 cd03215 ABC_Carb_Monos_II This 99.9 9.8E-24 2.1E-28 172.8 9.1 136 76-227 3-149 (182)
31 cd03226 ABC_cobalt_CbiO_domain 99.9 6.3E-24 1.4E-28 176.7 8.0 142 79-227 1-171 (205)
32 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 6.4E-24 1.4E-28 178.0 7.8 95 78-175 1-106 (218)
33 cd03261 ABC_Org_Solvent_Resist 99.9 6.9E-24 1.5E-28 180.0 8.0 91 78-175 1-101 (235)
34 TIGR00960 3a0501s02 Type II (G 99.9 8.9E-24 1.9E-28 177.0 8.5 94 77-175 1-104 (216)
35 COG4525 TauB ABC-type taurine 99.9 3.3E-24 7.1E-29 175.4 5.7 149 75-228 1-178 (259)
36 cd03230 ABC_DR_subfamily_A Thi 99.9 9.3E-24 2E-28 171.6 7.5 134 78-227 1-140 (173)
37 COG1122 CbiO ABC-type cobalt t 99.9 3.4E-23 7.3E-28 176.2 11.0 146 76-227 2-183 (235)
38 PRK09452 potA putrescine/sperm 99.9 9.2E-24 2E-28 191.1 8.0 97 74-177 11-112 (375)
39 PRK11247 ssuB aliphatic sulfon 99.9 1.4E-23 3E-28 181.1 8.6 143 76-227 11-178 (257)
40 cd03228 ABCC_MRP_Like The MRP 99.9 1.7E-23 3.7E-28 169.7 8.6 135 78-227 1-141 (171)
41 PRK09536 btuD corrinoid ABC tr 99.9 1.8E-23 4E-28 190.5 9.5 95 75-176 1-102 (402)
42 cd03232 ABC_PDR_domain2 The pl 99.9 1.9E-23 4.1E-28 172.5 8.7 145 77-227 3-153 (192)
43 cd03269 ABC_putative_ATPase Th 99.9 1.6E-23 3.5E-28 174.7 8.4 142 78-227 1-173 (210)
44 cd03247 ABCC_cytochrome_bd The 99.9 2.2E-23 4.8E-28 170.0 8.7 138 78-227 1-143 (178)
45 cd03259 ABC_Carb_Solutes_like 99.9 1.1E-23 2.4E-28 176.1 7.1 143 78-227 1-175 (213)
46 PRK11000 maltose/maltodextrin 99.9 1.2E-23 2.5E-28 190.2 7.8 94 76-176 2-100 (369)
47 TIGR03522 GldA_ABC_ATP gliding 99.9 1.8E-23 3.8E-28 184.2 8.7 144 77-227 2-178 (301)
48 TIGR01288 nodI ATP-binding ABC 99.9 1.9E-23 4E-28 184.1 8.6 92 76-174 3-100 (303)
49 cd03246 ABCC_Protease_Secretio 99.9 2.5E-23 5.4E-28 169.0 8.4 135 78-227 1-141 (173)
50 COG1137 YhbG ABC-type (unclass 99.9 4.1E-24 9E-29 175.1 3.7 98 75-179 2-107 (243)
51 cd03293 ABC_NrtD_SsuB_transpor 99.9 9.5E-24 2.1E-28 177.4 6.0 145 78-227 1-176 (220)
52 TIGR02673 FtsE cell division A 99.9 2.4E-23 5.1E-28 174.1 8.0 144 77-227 1-182 (214)
53 cd03266 ABC_NatA_sodium_export 99.9 2.4E-23 5.2E-28 174.6 8.0 148 77-227 1-181 (218)
54 cd03268 ABC_BcrA_bacitracin_re 99.9 3.5E-23 7.7E-28 172.5 9.0 143 78-227 1-171 (208)
55 PRK10895 lipopolysaccharide AB 99.9 2.8E-23 6.2E-28 176.8 8.6 93 76-175 2-102 (241)
56 PRK11248 tauB taurine transpor 99.9 1.4E-23 3E-28 180.8 6.7 144 77-227 1-173 (255)
57 PRK11264 putative amino-acid A 99.9 3E-23 6.5E-28 177.5 8.6 145 76-227 2-189 (250)
58 cd03265 ABC_DrrA DrrA is the A 99.9 2.7E-23 5.8E-28 174.7 8.0 91 78-175 1-97 (220)
59 cd03258 ABC_MetN_methionine_tr 99.9 2.5E-23 5.3E-28 176.3 7.8 148 77-227 1-185 (233)
60 cd03263 ABC_subfamily_A The AB 99.9 3E-23 6.5E-28 174.2 8.3 143 78-227 1-178 (220)
61 cd03218 ABC_YhbG The ABC trans 99.9 3.1E-23 6.8E-28 175.4 8.3 143 78-227 1-178 (232)
62 PRK11607 potG putrescine trans 99.9 2.4E-23 5.2E-28 188.6 7.9 97 74-177 16-117 (377)
63 PRK13543 cytochrome c biogenes 99.9 4E-23 8.7E-28 173.2 8.7 95 74-175 8-106 (214)
64 TIGR03258 PhnT 2-aminoethylpho 99.9 2E-23 4.4E-28 188.1 7.3 144 77-227 5-182 (362)
65 PRK10584 putative ABC transpor 99.9 4.2E-23 9.2E-28 174.3 8.7 150 75-227 4-191 (228)
66 cd03233 ABC_PDR_domain1 The pl 99.9 3.4E-23 7.3E-28 172.4 7.9 151 77-227 3-163 (202)
67 PRK11629 lolD lipoprotein tran 99.9 2.6E-23 5.6E-28 176.4 7.3 149 76-227 4-190 (233)
68 cd03262 ABC_HisP_GlnQ_permease 99.9 4E-23 8.7E-28 172.5 8.3 143 78-227 1-180 (213)
69 PRK11153 metN DL-methionine tr 99.9 2.7E-23 5.8E-28 186.2 7.6 148 77-227 1-185 (343)
70 cd03260 ABC_PstB_phosphate_tra 99.9 5.7E-23 1.2E-27 173.4 9.2 91 78-175 1-104 (227)
71 cd03224 ABC_TM1139_LivF_branch 99.9 4.9E-23 1.1E-27 173.0 8.7 143 78-227 1-177 (222)
72 PRK13540 cytochrome c biogenes 99.9 6.9E-23 1.5E-27 170.0 9.4 144 77-227 1-172 (200)
73 PRK13538 cytochrome c biogenes 99.9 5E-23 1.1E-27 171.4 8.4 144 77-227 1-174 (204)
74 PRK10908 cell division protein 99.9 4.7E-23 1E-27 173.5 8.2 144 77-227 1-182 (222)
75 cd03235 ABC_Metallic_Cations A 99.9 3.9E-23 8.6E-28 172.8 7.7 140 79-227 1-177 (213)
76 PRK13539 cytochrome c biogenes 99.9 5.9E-23 1.3E-27 171.4 8.7 144 77-227 2-172 (207)
77 cd03223 ABCD_peroxisomal_ALDP 99.9 7.2E-23 1.6E-27 165.5 8.8 134 78-227 1-136 (166)
78 PRK10247 putative ABC transpor 99.9 6.8E-23 1.5E-27 173.1 8.8 146 75-227 5-182 (225)
79 TIGR02315 ABC_phnC phosphonate 99.9 8.7E-23 1.9E-27 173.8 9.5 92 77-175 1-103 (243)
80 cd03257 ABC_NikE_OppD_transpor 99.9 4E-23 8.7E-28 174.1 7.3 95 77-174 1-107 (228)
81 cd03296 ABC_CysA_sulfate_impor 99.9 4.3E-23 9.2E-28 175.6 7.4 92 77-175 2-98 (239)
82 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 6.9E-23 1.5E-27 174.1 8.5 144 77-227 1-177 (236)
83 cd03301 ABC_MalK_N The N-termi 99.9 3.6E-23 7.9E-28 172.9 6.6 143 78-227 1-175 (213)
84 PRK14250 phosphate ABC transpo 99.9 1.2E-22 2.5E-27 173.3 9.7 145 76-227 2-176 (241)
85 COG4559 ABC-type hemin transpo 99.9 8.7E-23 1.9E-27 168.8 8.4 134 77-217 1-169 (259)
86 TIGR02211 LolD_lipo_ex lipopro 99.9 8.5E-23 1.8E-27 171.5 8.6 96 77-175 1-107 (221)
87 PRK10851 sulfate/thiosulfate t 99.9 6.4E-23 1.4E-27 184.4 8.2 94 77-177 2-100 (353)
88 cd03231 ABC_CcmA_heme_exporter 99.9 9.5E-23 2E-27 169.4 8.4 143 78-227 1-170 (201)
89 PRK11831 putative ABC transpor 99.9 6.5E-23 1.4E-27 177.7 7.7 94 75-175 5-108 (269)
90 cd03292 ABC_FtsE_transporter F 99.9 6.8E-23 1.5E-27 171.2 7.5 144 78-227 1-181 (214)
91 cd03225 ABC_cobalt_CbiO_domain 99.9 7.8E-23 1.7E-27 170.6 7.7 142 79-227 1-179 (211)
92 PRK13647 cbiO cobalt transport 99.9 9.2E-23 2E-27 177.3 8.4 145 76-227 3-183 (274)
93 PRK14267 phosphate ABC transpo 99.9 1.2E-22 2.7E-27 174.1 9.0 95 74-175 1-109 (253)
94 cd03216 ABC_Carb_Monos_I This 99.9 6.1E-23 1.3E-27 165.5 6.7 122 78-227 1-127 (163)
95 PRK11614 livF leucine/isoleuci 99.9 1E-22 2.2E-27 173.0 8.2 94 75-175 3-104 (237)
96 PRK09493 glnQ glutamine ABC tr 99.9 9.5E-23 2.1E-27 173.5 8.0 144 77-227 1-181 (240)
97 PRK14247 phosphate ABC transpo 99.9 1.3E-22 2.7E-27 173.8 8.7 94 75-175 1-106 (250)
98 TIGR03608 L_ocin_972_ABC putat 99.9 9.5E-23 2.1E-27 169.4 7.7 141 80-227 1-179 (206)
99 TIGR03411 urea_trans_UrtD urea 99.9 1.5E-22 3.3E-27 172.4 9.1 93 76-175 1-101 (242)
100 TIGR03410 urea_trans_UrtE urea 99.9 1E-22 2.3E-27 172.1 7.8 143 78-227 1-176 (230)
101 PRK13650 cbiO cobalt transport 99.9 1.8E-22 3.9E-27 175.9 9.5 148 76-227 3-185 (279)
102 COG1129 MglA ABC-type sugar tr 99.9 1.6E-22 3.5E-27 186.4 9.6 146 74-226 5-186 (500)
103 cd03256 ABC_PhnC_transporter A 99.9 1.5E-22 3.3E-27 172.0 8.8 91 78-175 1-102 (241)
104 PRK13633 cobalt transporter AT 99.9 1.4E-22 3.1E-27 176.6 8.8 151 74-227 1-189 (280)
105 PRK13635 cbiO cobalt transport 99.9 1.4E-22 2.9E-27 176.8 8.6 147 76-227 4-185 (279)
106 cd03254 ABCC_Glucan_exporter_l 99.9 3.1E-22 6.7E-27 169.0 10.5 145 77-227 2-184 (229)
107 TIGR01189 ccmA heme ABC export 99.9 1.3E-22 2.9E-27 168.0 7.8 143 78-227 1-172 (198)
108 PRK13652 cbiO cobalt transport 99.9 1.8E-22 4E-27 175.7 9.1 147 75-227 1-182 (277)
109 PRK13644 cbiO cobalt transport 99.9 1.4E-22 3.1E-27 176.1 8.4 144 77-227 1-181 (274)
110 cd03264 ABC_drug_resistance_li 99.9 1.3E-22 2.7E-27 169.5 7.6 142 78-227 1-175 (211)
111 cd03219 ABC_Mj1267_LivG_branch 99.9 8.1E-23 1.7E-27 173.3 6.5 91 78-175 1-99 (236)
112 PRK11124 artP arginine transpo 99.9 2.1E-22 4.6E-27 171.6 9.1 144 77-227 2-186 (242)
113 COG4674 Uncharacterized ABC-ty 99.9 8.2E-23 1.8E-27 167.1 6.0 135 76-217 4-175 (249)
114 PRK13637 cbiO cobalt transport 99.9 2.1E-22 4.5E-27 176.2 9.0 96 77-175 2-108 (287)
115 PRK13638 cbiO cobalt transport 99.9 1.7E-22 3.7E-27 175.2 8.2 144 77-227 1-181 (271)
116 PRK14270 phosphate ABC transpo 99.9 2.9E-22 6.2E-27 171.7 9.4 147 74-227 1-192 (251)
117 PRK13634 cbiO cobalt transport 99.9 2.4E-22 5.3E-27 176.1 9.1 147 77-226 2-189 (290)
118 PRK14241 phosphate transporter 99.9 2.4E-22 5.1E-27 173.0 8.8 145 76-227 3-193 (258)
119 PRK13641 cbiO cobalt transport 99.9 2.3E-22 4.9E-27 176.0 8.8 96 77-175 2-110 (287)
120 TIGR00972 3a0107s01c2 phosphat 99.9 2.2E-22 4.7E-27 172.1 8.4 92 77-175 1-105 (247)
121 PRK13636 cbiO cobalt transport 99.9 2.4E-22 5.2E-27 175.5 8.7 145 76-227 4-186 (283)
122 cd03251 ABCC_MsbA MsbA is an e 99.9 3.5E-22 7.5E-27 169.2 9.4 145 78-227 1-183 (234)
123 PRK14273 phosphate ABC transpo 99.9 3.7E-22 8E-27 171.3 9.5 94 75-175 5-111 (254)
124 PRK11231 fecE iron-dicitrate t 99.9 3.4E-22 7.4E-27 171.7 9.2 144 77-227 2-183 (255)
125 PRK13643 cbiO cobalt transport 99.9 2.4E-22 5.3E-27 175.9 8.4 97 77-176 1-110 (288)
126 PRK11300 livG leucine/isoleuci 99.9 2.5E-22 5.4E-27 172.3 8.3 93 76-175 4-104 (255)
127 PRK13651 cobalt transporter AT 99.9 3.3E-22 7.1E-27 176.5 9.1 67 77-146 2-70 (305)
128 PRK13548 hmuV hemin importer A 99.9 3.5E-22 7.5E-27 172.2 9.0 92 77-175 2-100 (258)
129 PRK15439 autoinducer 2 ABC tra 99.9 2.6E-22 5.7E-27 188.3 9.0 147 74-227 8-185 (510)
130 PRK14242 phosphate transporter 99.9 3.7E-22 8.1E-27 171.1 9.1 97 75-175 4-110 (253)
131 PRK09984 phosphonate/organopho 99.9 4.5E-22 9.8E-27 171.6 9.7 146 75-227 2-197 (262)
132 cd03245 ABCC_bacteriocin_expor 99.9 6.5E-22 1.4E-26 166.1 10.4 145 78-227 3-185 (220)
133 PRK10575 iron-hydroxamate tran 99.9 4.2E-22 9.1E-27 172.2 9.3 146 75-227 9-192 (265)
134 PRK14262 phosphate ABC transpo 99.9 3.8E-22 8.2E-27 170.8 8.8 94 75-175 1-107 (250)
135 COG4604 CeuD ABC-type enteroch 99.9 3.4E-22 7.3E-27 163.7 8.0 133 77-216 1-162 (252)
136 PRK10762 D-ribose transporter 99.9 2.9E-22 6.2E-27 187.6 8.7 94 76-176 3-104 (501)
137 PRK13646 cbiO cobalt transport 99.9 4E-22 8.6E-27 174.4 8.9 148 77-227 2-190 (286)
138 PRK14235 phosphate transporter 99.9 4.8E-22 1E-26 172.1 9.2 95 74-175 16-123 (267)
139 cd03252 ABCC_Hemolysin The ABC 99.9 6.8E-22 1.5E-26 167.9 9.9 93 78-175 1-99 (237)
140 PRK10619 histidine/lysine/argi 99.9 4E-22 8.6E-27 171.5 8.6 145 76-227 4-197 (257)
141 PRK14268 phosphate ABC transpo 99.9 4.1E-22 9E-27 171.6 8.6 94 75-175 10-116 (258)
142 TIGR01188 drrA daunorubicin re 99.9 2.1E-22 4.7E-27 177.3 6.8 136 85-227 1-169 (302)
143 PRK13632 cbiO cobalt transport 99.9 5.1E-22 1.1E-26 172.3 8.9 147 76-227 6-187 (271)
144 PRK13541 cytochrome c biogenes 99.9 5.7E-22 1.2E-26 163.9 8.8 142 77-226 1-167 (195)
145 cd03295 ABC_OpuCA_Osmoprotecti 99.9 4.6E-22 1E-26 169.6 8.4 91 78-175 1-99 (242)
146 TIGR02982 heterocyst_DevA ABC 99.9 5.7E-22 1.2E-26 166.7 8.8 148 77-227 1-186 (220)
147 PRK14249 phosphate ABC transpo 99.9 5.3E-22 1.2E-26 170.1 8.7 94 75-175 2-108 (251)
148 PRK10070 glycine betaine trans 99.9 1.9E-22 4.2E-27 183.7 6.4 149 76-227 3-209 (400)
149 PRK15079 oligopeptide ABC tran 99.9 4.6E-22 1E-26 177.4 8.6 98 75-175 6-124 (331)
150 cd03217 ABC_FeS_Assembly ABC-t 99.9 3.7E-22 8.1E-27 165.8 7.4 139 78-227 1-149 (200)
151 PRK14253 phosphate ABC transpo 99.9 6.5E-22 1.4E-26 169.2 9.0 94 75-175 1-106 (249)
152 TIGR03740 galliderm_ABC gallid 99.9 3.3E-22 7.2E-27 168.4 7.0 142 78-227 1-169 (223)
153 PRK10253 iron-enterobactin tra 99.9 7.9E-22 1.7E-26 170.5 9.4 145 76-227 6-188 (265)
154 TIGR03005 ectoine_ehuA ectoine 99.9 4.6E-22 1E-26 170.5 7.8 143 78-227 1-191 (252)
155 PRK09700 D-allose transporter 99.9 5.2E-22 1.1E-26 186.2 8.8 94 75-175 3-104 (510)
156 PRK14259 phosphate ABC transpo 99.9 9E-22 1.9E-26 170.7 9.7 98 75-176 11-118 (269)
157 PRK14237 phosphate transporter 99.9 9.1E-22 2E-26 170.4 9.7 150 74-227 17-208 (267)
158 cd03244 ABCC_MRP_domain2 Domai 99.9 1.1E-21 2.4E-26 164.7 9.8 145 78-227 3-184 (221)
159 cd03248 ABCC_TAP TAP, the Tran 99.9 1.8E-21 3.8E-26 164.2 11.0 97 75-175 9-111 (226)
160 PRK14274 phosphate ABC transpo 99.9 9.7E-22 2.1E-26 169.3 9.6 95 74-175 9-116 (259)
161 cd03253 ABCC_ATM1_transporter 99.9 1.1E-21 2.3E-26 166.4 9.6 143 78-227 1-182 (236)
162 PRK14240 phosphate transporter 99.9 8E-22 1.7E-26 168.8 8.9 95 77-175 3-107 (250)
163 PRK13549 xylose transporter AT 99.9 6.9E-22 1.5E-26 185.2 9.0 95 75-176 3-107 (506)
164 PRK13642 cbiO cobalt transport 99.9 8.1E-22 1.7E-26 171.6 8.7 148 76-227 3-185 (277)
165 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 1.4E-21 2.9E-26 166.1 9.8 94 78-175 1-100 (238)
166 PRK14251 phosphate ABC transpo 99.9 1.1E-21 2.3E-26 168.1 9.1 96 76-175 3-108 (251)
167 PRK14261 phosphate ABC transpo 99.9 8.8E-22 1.9E-26 168.9 8.6 97 75-176 4-111 (253)
168 PRK14239 phosphate transporter 99.9 1E-21 2.3E-26 168.1 9.1 145 76-227 4-193 (252)
169 cd03298 ABC_ThiQ_thiamine_tran 99.9 7.3E-22 1.6E-26 164.9 7.9 141 78-227 1-173 (211)
170 PRK14256 phosphate ABC transpo 99.9 1.1E-21 2.4E-26 168.2 9.0 97 75-175 2-109 (252)
171 PRK10744 pstB phosphate transp 99.9 1.4E-21 2.9E-26 168.5 9.4 97 75-175 11-117 (260)
172 PRK13649 cbiO cobalt transport 99.9 8.9E-22 1.9E-26 171.4 8.2 96 77-175 2-110 (280)
173 TIGR03873 F420-0_ABC_ATP propo 99.9 1.1E-21 2.3E-26 168.7 8.6 143 78-227 2-182 (256)
174 PRK11308 dppF dipeptide transp 99.9 1.4E-21 3E-26 174.1 9.6 150 75-227 3-199 (327)
175 cd03214 ABC_Iron-Siderophores_ 99.9 4.9E-22 1.1E-26 162.4 6.1 136 79-227 1-142 (180)
176 PRK14265 phosphate ABC transpo 99.9 1.4E-21 3.1E-26 169.9 9.4 150 74-227 17-206 (274)
177 PRK14245 phosphate ABC transpo 99.9 1.4E-21 3.1E-26 167.3 9.2 93 76-175 2-107 (250)
178 TIGR02324 CP_lyasePhnL phospho 99.9 1.8E-21 3.8E-26 164.0 9.6 95 77-174 1-113 (224)
179 PRK13640 cbiO cobalt transport 99.9 1.2E-21 2.6E-26 171.0 8.8 147 76-227 4-188 (282)
180 TIGR01978 sufC FeS assembly AT 99.9 8E-22 1.7E-26 167.8 7.4 90 78-174 1-100 (243)
181 PRK13639 cbiO cobalt transport 99.9 1.1E-21 2.3E-26 170.7 8.3 93 77-175 1-103 (275)
182 PRK11701 phnK phosphonate C-P 99.9 2.1E-21 4.5E-26 167.1 10.1 145 75-226 4-195 (258)
183 PRK13631 cbiO cobalt transport 99.9 1.4E-21 2.9E-26 173.7 9.1 100 73-175 17-141 (320)
184 PRK15112 antimicrobial peptide 99.9 9.5E-22 2.1E-26 170.3 7.9 149 76-227 3-194 (267)
185 PRK14272 phosphate ABC transpo 99.9 1.2E-21 2.6E-26 167.8 8.4 93 76-175 3-109 (252)
186 cd03300 ABC_PotA_N PotA is an 99.9 7E-22 1.5E-26 167.5 6.9 143 78-227 1-175 (232)
187 PRK10771 thiQ thiamine transpo 99.9 1.4E-21 3.1E-26 165.6 8.5 142 77-227 1-174 (232)
188 PRK11288 araG L-arabinose tran 99.9 1.2E-21 2.7E-26 183.3 8.8 93 76-175 3-103 (501)
189 TIGR00968 3a0106s01 sulfate AB 99.9 9.1E-22 2E-26 167.5 7.1 143 78-227 1-175 (237)
190 PRK13645 cbiO cobalt transport 99.9 1.6E-21 3.4E-26 170.7 8.8 96 77-175 6-115 (289)
191 PRK09544 znuC high-affinity zi 99.9 2E-21 4.3E-26 167.0 9.2 137 75-226 2-164 (251)
192 PRK10938 putative molybdenum t 99.9 1.6E-21 3.5E-26 182.0 9.4 143 76-227 2-180 (490)
193 PRK10419 nikE nickel transport 99.9 1.8E-21 3.9E-26 168.7 9.0 150 75-227 1-196 (268)
194 PRK11022 dppD dipeptide transp 99.9 1.6E-21 3.4E-26 173.7 8.7 153 75-227 1-198 (326)
195 COG2274 SunT ABC-type bacterio 99.9 2.8E-21 6E-26 186.5 11.1 146 77-227 471-654 (709)
196 PRK13648 cbiO cobalt transport 99.9 2.1E-21 4.5E-26 168.2 9.3 148 75-227 5-187 (269)
197 PRK14248 phosphate ABC transpo 99.8 2.5E-21 5.5E-26 167.5 9.6 98 74-175 18-125 (268)
198 PRK14243 phosphate transporter 99.8 2.3E-21 5E-26 167.6 9.2 96 76-175 9-114 (264)
199 TIGR02769 nickel_nikE nickel i 99.8 1.9E-21 4.2E-26 168.1 8.5 95 77-174 2-113 (265)
200 cd03369 ABCC_NFT1 Domain 2 of 99.8 3E-21 6.5E-26 160.8 9.3 147 76-227 5-170 (207)
201 PRK13547 hmuV hemin importer A 99.8 2.3E-21 4.9E-26 168.6 8.8 92 77-175 1-107 (272)
202 KOG0058 Peptide exporter, ABC 99.8 4.4E-21 9.6E-26 181.2 11.5 147 77-227 465-649 (716)
203 PRK14275 phosphate ABC transpo 99.8 2.4E-21 5.3E-26 169.4 9.0 98 74-175 36-143 (286)
204 cd03250 ABCC_MRP_domain1 Domai 99.8 2.2E-21 4.8E-26 161.3 8.3 64 78-144 1-66 (204)
205 TIGR01277 thiQ thiamine ABC tr 99.8 1.6E-21 3.4E-26 163.3 7.4 141 78-227 1-173 (213)
206 PRK11144 modC molybdate transp 99.8 1.6E-21 3.6E-26 175.2 7.9 141 77-227 1-173 (352)
207 PRK14269 phosphate ABC transpo 99.8 2.4E-21 5.3E-26 165.6 8.4 95 77-175 2-102 (246)
208 PRK14254 phosphate ABC transpo 99.8 2.7E-21 5.9E-26 169.1 8.9 98 74-175 36-143 (285)
209 PRK14260 phosphate ABC transpo 99.8 3.7E-21 8E-26 165.7 9.5 94 75-175 5-111 (259)
210 PRK15056 manganese/iron transp 99.8 2.1E-21 4.6E-26 168.5 8.1 144 77-227 6-187 (272)
211 PRK14238 phosphate transporter 99.8 2.8E-21 6E-26 167.8 8.7 149 75-227 22-212 (271)
212 TIGR02323 CP_lyasePhnK phospho 99.8 2.4E-21 5.1E-26 166.1 8.1 145 76-227 2-193 (253)
213 cd03294 ABC_Pro_Gly_Bertaine T 99.8 7.4E-22 1.6E-26 171.2 4.4 142 79-227 26-205 (269)
214 PRK14271 phosphate ABC transpo 99.8 4.2E-21 9.1E-26 167.2 9.0 93 76-175 20-124 (276)
215 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.8 2.3E-21 5E-26 153.3 6.7 114 78-227 1-115 (144)
216 TIGR02868 CydC thiol reductant 99.8 4.6E-21 1E-25 180.3 9.9 94 77-176 334-432 (529)
217 PRK15093 antimicrobial peptide 99.8 3.1E-21 6.7E-26 172.0 8.2 100 75-174 1-114 (330)
218 COG4181 Predicted ABC-type tra 99.8 3.6E-21 7.8E-26 154.7 7.7 101 77-180 6-117 (228)
219 COG1119 ModF ABC-type molybden 99.8 2.6E-21 5.7E-26 163.0 7.1 148 74-228 28-217 (257)
220 COG3840 ThiQ ABC-type thiamine 99.8 4.2E-21 9.1E-26 155.5 8.0 141 77-226 1-173 (231)
221 PRK14264 phosphate ABC transpo 99.8 6.4E-21 1.4E-25 168.2 9.8 98 74-175 42-149 (305)
222 PRK09473 oppD oligopeptide tra 99.8 4.8E-21 1E-25 170.9 9.0 151 74-227 9-206 (330)
223 CHL00131 ycf16 sulfate ABC tra 99.8 4.3E-21 9.3E-26 164.3 8.3 146 75-227 5-196 (252)
224 PRK14266 phosphate ABC transpo 99.8 7.2E-21 1.6E-25 162.9 9.5 148 76-227 2-191 (250)
225 PRK14236 phosphate transporter 99.8 6.2E-21 1.3E-25 165.6 9.2 149 75-227 23-213 (272)
226 PRK14255 phosphate ABC transpo 99.8 5.8E-21 1.3E-25 163.6 8.9 95 76-175 4-109 (252)
227 PRK11819 putative ABC transpor 99.8 5E-21 1.1E-25 181.4 9.3 88 75-175 4-94 (556)
228 COG4619 ABC-type uncharacteriz 99.8 1.1E-21 2.3E-26 157.3 3.9 144 77-227 3-178 (223)
229 COG1123 ATPase components of v 99.8 8.1E-21 1.8E-25 176.3 10.3 151 74-227 277-474 (539)
230 COG0488 Uup ATPase components 99.8 1.2E-21 2.7E-26 183.5 4.9 168 38-217 263-467 (530)
231 PRK14258 phosphate ABC transpo 99.8 6.6E-21 1.4E-25 164.4 9.0 93 76-175 6-111 (261)
232 PRK14263 phosphate ABC transpo 99.8 6.7E-21 1.5E-25 164.6 8.8 145 76-227 7-194 (261)
233 TIGR01186 proV glycine betaine 99.8 1.4E-21 3E-26 176.1 4.5 85 85-176 1-96 (363)
234 PRK11147 ABC transporter ATPas 99.8 6.8E-21 1.5E-25 183.1 9.4 139 74-226 316-484 (635)
235 TIGR02142 modC_ABC molybdenum 99.8 3.6E-21 7.9E-26 173.1 7.0 137 82-227 4-176 (354)
236 cd03234 ABCG_White The White s 99.8 4.2E-21 9E-26 162.1 6.8 99 77-175 3-105 (226)
237 TIGR01166 cbiO cobalt transpor 99.8 3.5E-21 7.7E-26 158.3 6.3 129 96-227 7-172 (190)
238 PRK10418 nikD nickel transport 99.8 7.2E-21 1.6E-25 163.5 8.3 64 77-148 4-72 (254)
239 TIGR03415 ABC_choXWV_ATP choli 99.8 4.4E-21 9.4E-26 173.9 7.3 139 82-227 29-209 (382)
240 PRK14246 phosphate ABC transpo 99.8 8.8E-21 1.9E-25 163.5 8.6 94 75-175 8-114 (257)
241 cd03299 ABC_ModC_like Archeal 99.8 4.8E-21 1E-25 162.8 6.7 142 78-227 1-174 (235)
242 cd03290 ABCC_SUR1_N The SUR do 99.8 1.2E-20 2.5E-25 158.5 8.8 91 79-175 2-102 (218)
243 COG4608 AppF ABC-type oligopep 99.8 1.7E-20 3.6E-25 160.6 9.7 144 75-227 2-154 (268)
244 TIGR02633 xylG D-xylose ABC tr 99.8 7.4E-21 1.6E-25 177.9 8.2 93 77-176 1-103 (500)
245 cd03288 ABCC_SUR2 The SUR doma 99.8 1.4E-20 2.9E-25 162.1 9.2 147 76-227 18-201 (257)
246 PRK14252 phosphate ABC transpo 99.8 1.4E-20 3.1E-25 162.6 9.4 93 76-175 15-122 (265)
247 cd03297 ABC_ModC_molybdenum_tr 99.8 8E-21 1.7E-25 159.0 7.4 136 82-227 5-176 (214)
248 PRK09580 sufC cysteine desulfu 99.8 1.2E-20 2.5E-25 161.2 8.2 64 77-147 1-67 (248)
249 KOG0055 Multidrug/pheromone ex 99.8 3.1E-20 6.6E-25 184.1 11.9 145 77-227 350-534 (1228)
250 cd03267 ABC_NatA_like Similar 99.8 6.7E-21 1.4E-25 162.1 6.0 77 96-175 36-119 (236)
251 PRK10261 glutathione transport 99.8 1.2E-20 2.6E-25 181.0 8.2 98 75-175 10-130 (623)
252 PRK15064 ABC transporter ATP-b 99.8 1.4E-20 3.1E-25 177.3 8.5 61 77-144 1-62 (530)
253 PRK10982 galactose/methyl gala 99.8 7.8E-21 1.7E-25 177.5 6.7 89 80-175 1-97 (491)
254 TIGR03796 NHPM_micro_ABC1 NHPM 99.8 2.4E-20 5.2E-25 181.2 10.3 145 77-226 477-659 (710)
255 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.8 5.4E-21 1.2E-25 161.5 5.0 63 78-147 23-86 (224)
256 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 2.2E-20 4.8E-25 176.8 9.1 85 76-175 3-92 (552)
257 PRK14244 phosphate ABC transpo 99.8 2.6E-20 5.6E-25 159.6 8.6 94 78-175 6-109 (251)
258 TIGR02857 CydD thiol reductant 99.8 3.7E-20 8E-25 174.2 10.4 146 77-227 320-503 (529)
259 TIGR01193 bacteriocin_ABC ABC- 99.8 3.4E-20 7.4E-25 180.1 10.3 144 77-226 473-655 (708)
260 TIGR03797 NHPM_micro_ABC2 NHPM 99.8 2.8E-20 6E-25 180.1 9.6 95 77-176 451-551 (686)
261 COG4598 HisP ABC-type histidin 99.8 2.7E-20 5.8E-25 150.8 7.7 145 75-226 4-196 (256)
262 TIGR03269 met_CoM_red_A2 methy 99.8 2.8E-20 6E-25 174.9 8.6 59 78-143 1-62 (520)
263 PRK10261 glutathione transport 99.8 3E-20 6.4E-25 178.3 9.0 98 75-175 311-427 (623)
264 PRK11176 lipid transporter ATP 99.8 5.1E-20 1.1E-24 175.0 10.5 94 77-175 341-440 (582)
265 TIGR03375 type_I_sec_LssB type 99.8 5.6E-20 1.2E-24 178.2 10.5 146 77-227 463-646 (694)
266 PRK09700 D-allose transporter 99.8 4.2E-20 9.1E-25 173.3 9.0 91 76-175 264-365 (510)
267 COG1134 TagH ABC-type polysacc 99.8 4.3E-20 9.4E-25 155.7 8.1 127 92-227 38-192 (249)
268 COG4175 ProV ABC-type proline/ 99.8 8E-20 1.7E-24 158.9 9.9 146 75-223 2-205 (386)
269 TIGR00958 3a01208 Conjugate Tr 99.8 6.3E-20 1.4E-24 178.4 10.2 96 77-176 478-579 (711)
270 TIGR01257 rim_protein retinal- 99.8 2.8E-20 6E-25 194.4 8.1 149 74-227 1934-2115(2272)
271 cd03289 ABCC_CFTR2 The CFTR su 99.8 1.2E-19 2.6E-24 158.1 10.6 144 78-227 3-183 (275)
272 PRK14257 phosphate ABC transpo 99.8 5.7E-20 1.2E-24 163.8 8.2 98 76-175 79-186 (329)
273 KOG0057 Mitochondrial Fe/S clu 99.8 2.4E-19 5.2E-24 165.0 12.4 94 77-177 351-450 (591)
274 PRK10790 putative multidrug tr 99.8 8.8E-20 1.9E-24 173.9 9.9 94 77-176 340-439 (592)
275 PRK15134 microcin C ABC transp 99.8 8.7E-20 1.9E-24 171.9 9.5 97 75-174 3-117 (529)
276 PRK13549 xylose transporter AT 99.8 5.9E-20 1.3E-24 172.2 8.4 97 75-175 257-365 (506)
277 PRK11160 cysteine/glutathione 99.8 8.6E-20 1.9E-24 173.6 9.6 95 77-176 338-438 (574)
278 COG4133 CcmA ABC-type transpor 99.8 5.6E-20 1.2E-24 149.5 6.9 97 77-180 2-104 (209)
279 TIGR03269 met_CoM_red_A2 methy 99.8 7.8E-20 1.7E-24 171.9 9.1 149 75-226 277-471 (520)
280 cd03222 ABC_RNaseL_inhibitor T 99.8 3.6E-20 7.8E-25 151.5 5.5 112 81-227 4-116 (177)
281 TIGR01192 chvA glucan exporter 99.8 1.2E-19 2.5E-24 173.1 9.8 145 77-227 334-516 (585)
282 PRK13657 cyclic beta-1,2-gluca 99.8 1.1E-19 2.4E-24 173.1 9.6 93 77-175 334-432 (588)
283 PRK11819 putative ABC transpor 99.8 7.5E-20 1.6E-24 173.4 8.4 86 75-175 322-412 (556)
284 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 8.3E-20 1.8E-24 172.9 8.4 86 75-175 320-410 (552)
285 COG4161 ArtP ABC-type arginine 99.8 3.5E-19 7.7E-24 142.2 10.6 144 77-227 2-186 (242)
286 TIGR02633 xylG D-xylose ABC tr 99.8 8.6E-20 1.9E-24 170.7 8.4 93 76-175 256-363 (500)
287 COG4586 ABC-type uncharacteriz 99.8 1.1E-19 2.3E-24 155.3 8.1 68 77-147 3-88 (325)
288 TIGR01184 ntrCD nitrate transp 99.8 3.8E-20 8.2E-25 156.9 5.1 128 97-227 1-159 (230)
289 TIGR02203 MsbA_lipidA lipid A 99.8 2.6E-19 5.6E-24 169.7 11.0 146 77-227 330-514 (571)
290 TIGR02204 MsbA_rel ABC transpo 99.8 2.3E-19 5.1E-24 170.2 10.7 96 77-176 337-438 (576)
291 cd00267 ABC_ATPase ABC (ATP-bi 99.8 1E-19 2.2E-24 145.3 6.9 120 80-227 2-125 (157)
292 PRK10636 putative ABC transpor 99.8 1E-19 2.2E-24 175.0 8.1 63 74-143 309-372 (638)
293 TIGR01846 type_I_sec_HlyB type 99.8 2.1E-19 4.6E-24 174.3 10.2 146 77-227 455-638 (694)
294 PRK15064 ABC transporter ATP-b 99.8 1.6E-19 3.6E-24 170.1 9.0 62 76-144 318-380 (530)
295 COG4987 CydC ABC-type transpor 99.8 2.7E-19 5.9E-24 164.4 10.1 147 77-228 336-520 (573)
296 PRK10938 putative molybdenum t 99.8 1.6E-19 3.4E-24 168.6 8.7 66 74-146 257-324 (490)
297 COG1132 MdlB ABC-type multidru 99.8 2.8E-19 6.1E-24 169.7 10.4 94 77-177 328-428 (567)
298 PRK10789 putative multidrug tr 99.8 2.5E-19 5.3E-24 170.3 10.0 145 77-226 313-495 (569)
299 PRK13546 teichoic acids export 99.8 2E-19 4.4E-24 155.8 8.6 141 77-227 4-188 (264)
300 COG0396 sufC Cysteine desulfur 99.8 1.2E-19 2.5E-24 151.8 6.6 138 75-217 1-172 (251)
301 TIGR01842 type_I_sec_PrtD type 99.8 2.7E-19 5.9E-24 169.0 10.1 94 77-175 316-415 (544)
302 TIGR01257 rim_protein retinal- 99.8 1.3E-19 2.7E-24 189.5 8.2 148 75-227 926-1106(2272)
303 PRK13545 tagH teichoic acids e 99.8 2E-19 4.3E-24 167.6 8.2 141 76-227 20-188 (549)
304 PRK11174 cysteine/glutathione 99.8 2.6E-19 5.7E-24 170.4 8.9 93 77-176 349-447 (588)
305 COG0444 DppD ABC-type dipeptid 99.8 6E-19 1.3E-23 154.1 10.2 152 77-228 1-199 (316)
306 PRK15134 microcin C ABC transp 99.8 1.2E-19 2.7E-24 170.9 6.3 148 75-226 273-469 (529)
307 PRK11147 ABC transporter ATPas 99.8 1.7E-19 3.7E-24 173.4 7.0 63 75-144 1-64 (635)
308 PTZ00265 multidrug resistance 99.8 8.1E-19 1.8E-23 181.1 11.9 96 77-176 382-484 (1466)
309 COG0488 Uup ATPase components 99.8 2.5E-19 5.4E-24 168.0 7.3 59 75-140 1-59 (530)
310 PRK10535 macrolide transporter 99.8 3.2E-19 7E-24 171.8 8.2 149 76-227 3-189 (648)
311 PRK03695 vitamin B12-transport 99.8 2.4E-19 5.3E-24 153.6 6.5 137 79-227 2-178 (248)
312 PTZ00265 multidrug resistance 99.8 1E-18 2.3E-23 180.3 11.5 147 77-227 1165-1403(1466)
313 PRK10636 putative ABC transpor 99.8 5.2E-19 1.1E-23 170.1 8.4 62 77-145 1-63 (638)
314 TIGR02770 nickel_nikD nickel i 99.8 3.5E-19 7.6E-24 150.8 6.3 76 96-174 1-87 (230)
315 COG4988 CydD ABC-type transpor 99.8 7.9E-19 1.7E-23 162.9 9.0 144 78-227 321-501 (559)
316 COG4136 ABC-type uncharacteriz 99.8 2.9E-19 6.3E-24 141.1 5.0 135 77-217 2-162 (213)
317 cd03291 ABCC_CFTR1 The CFTR su 99.8 1E-18 2.2E-23 152.8 8.9 62 74-144 36-98 (282)
318 PRK10982 galactose/methyl gala 99.8 6.9E-19 1.5E-23 164.4 8.3 144 75-227 248-436 (491)
319 PRK15177 Vi polysaccharide exp 99.8 6.2E-19 1.3E-23 148.0 6.5 71 96-176 2-74 (213)
320 COG1123 ATPase components of v 99.8 2.4E-18 5.2E-23 159.9 10.8 149 76-227 4-199 (539)
321 PRK13409 putative ATPase RIL; 99.8 8.1E-19 1.8E-23 167.2 7.9 138 74-227 337-498 (590)
322 PLN03211 ABC transporter G-25; 99.8 6.2E-19 1.3E-23 169.9 7.0 90 79-176 70-165 (659)
323 PRK10762 D-ribose transporter 99.8 1.2E-18 2.6E-23 163.2 8.5 89 75-175 255-354 (501)
324 PF00005 ABC_tran: ABC transpo 99.8 8.3E-20 1.8E-24 142.0 -0.0 117 97-217 1-136 (137)
325 PRK10522 multidrug transporter 99.7 2.1E-18 4.6E-23 163.1 8.5 143 77-225 322-492 (547)
326 PRK11288 araG L-arabinose tran 99.7 2.1E-18 4.4E-23 161.6 8.2 89 76-175 256-355 (501)
327 PLN03232 ABC transporter C fam 99.7 2E-18 4.4E-23 178.9 9.0 94 77-175 1234-1333(1495)
328 KOG0055 Multidrug/pheromone ex 99.7 7.5E-18 1.6E-22 167.2 12.3 147 77-227 987-1171(1228)
329 TIGR01194 cyc_pep_trnsptr cycl 99.7 2.5E-18 5.5E-23 162.9 7.8 144 77-223 337-511 (555)
330 PLN03130 ABC transporter C fam 99.7 3.2E-18 7E-23 178.1 9.1 94 77-175 1237-1336(1622)
331 PRK15439 autoinducer 2 ABC tra 99.7 3.7E-18 7.9E-23 160.3 8.6 87 75-173 266-363 (510)
332 COG4167 SapF ABC-type antimicr 99.7 3.9E-18 8.4E-23 138.7 6.0 149 75-226 2-193 (267)
333 TIGR00954 3a01203 Peroxysomal 99.7 7.6E-18 1.7E-22 162.6 9.1 86 76-175 450-538 (659)
334 COG4107 PhnK ABC-type phosphon 99.7 7.6E-18 1.6E-22 136.1 7.6 146 75-227 4-196 (258)
335 cd03236 ABC_RNaseL_inhibitor_d 99.7 4.5E-18 9.8E-23 146.7 6.6 54 81-141 4-57 (255)
336 COG4172 ABC-type uncharacteriz 99.7 7.5E-18 1.6E-22 150.7 7.6 149 74-226 273-470 (534)
337 PTZ00243 ABC transporter; Prov 99.7 8.6E-18 1.9E-22 174.6 9.2 93 77-174 1308-1406(1560)
338 COG1101 PhnK ABC-type uncharac 99.7 5.1E-18 1.1E-22 140.8 5.9 148 77-227 1-193 (263)
339 TIGR00956 3a01205 Pleiotropic 99.7 1.3E-17 2.9E-22 171.7 9.8 100 76-176 758-861 (1394)
340 cd03237 ABC_RNaseL_inhibitor_d 99.7 7.2E-18 1.6E-22 144.6 6.6 122 96-227 9-160 (246)
341 PLN03073 ABC transporter F fam 99.7 9.8E-18 2.1E-22 162.9 8.1 64 75-144 506-570 (718)
342 TIGR00957 MRP_assoc_pro multi 99.7 1.3E-17 2.9E-22 173.1 9.3 92 77-173 1284-1381(1522)
343 KOG0056 Heavy metal exporter H 99.7 4.4E-17 9.5E-22 148.6 11.4 145 77-227 537-719 (790)
344 KOG0059 Lipid exporter ABCA1 a 99.7 3.9E-17 8.4E-22 162.1 10.3 147 75-227 562-743 (885)
345 TIGR03771 anch_rpt_ABC anchore 99.7 2.2E-17 4.8E-22 139.3 6.8 121 102-227 1-158 (223)
346 PRK13409 putative ATPase RIL; 99.7 2E-17 4.3E-22 157.8 6.7 139 82-227 78-257 (590)
347 COG4778 PhnL ABC-type phosphon 99.7 1.5E-16 3.2E-21 128.1 10.1 150 76-228 3-198 (235)
348 COG4148 ModC ABC-type molybdat 99.7 1.7E-17 3.6E-22 142.4 3.7 135 82-227 5-173 (352)
349 TIGR00955 3a01204 The Eye Pigm 99.7 6.7E-17 1.4E-21 155.0 8.1 129 95-226 39-210 (617)
350 cd03238 ABC_UvrA The excision 99.7 3.8E-17 8.3E-22 133.5 5.4 120 95-227 9-134 (176)
351 TIGR01271 CFTR_protein cystic 99.7 1.2E-16 2.5E-21 165.8 9.4 145 77-227 1217-1398(1490)
352 PLN03073 ABC transporter F fam 99.7 1.4E-16 3.1E-21 154.8 8.1 62 75-140 175-236 (718)
353 TIGR00957 MRP_assoc_pro multi 99.7 2.3E-16 4.9E-21 164.0 9.2 134 77-225 636-803 (1522)
354 PLN03140 ABC transporter G fam 99.7 1.5E-16 3.3E-21 164.1 7.7 99 77-176 867-978 (1470)
355 PLN03140 ABC transporter G fam 99.6 3.4E-16 7.4E-21 161.6 6.8 81 94-177 178-265 (1470)
356 PLN03232 ABC transporter C fam 99.6 7.1E-16 1.5E-20 160.2 8.2 88 77-176 614-703 (1495)
357 PLN03130 ABC transporter C fam 99.6 1.4E-15 3E-20 158.7 9.7 87 77-177 614-704 (1622)
358 TIGR01271 CFTR_protein cystic 99.6 1.1E-15 2.4E-20 158.6 8.2 116 96-224 441-590 (1490)
359 COG4172 ABC-type uncharacteriz 99.6 6.6E-15 1.4E-19 132.0 11.1 154 74-227 3-202 (534)
360 TIGR00956 3a01205 Pleiotropic 99.6 3.8E-15 8.3E-20 153.7 8.5 82 95-176 75-163 (1394)
361 COG4618 ArpD ABC-type protease 99.6 1.3E-14 2.7E-19 133.1 10.9 92 77-175 334-433 (580)
362 COG5265 ATM1 ABC-type transpor 99.6 1.5E-14 3.3E-19 130.1 10.2 95 77-177 262-362 (497)
363 KOG0927 Predicted transporter 99.5 1E-14 2.2E-19 134.4 8.2 146 74-227 386-554 (614)
364 KOG0061 Transporter, ABC super 99.5 1.9E-14 4.1E-19 137.9 10.4 150 77-226 25-214 (613)
365 TIGR01187 potA spermidine/putr 99.5 1.9E-15 4.1E-20 134.6 2.6 113 112-227 1-145 (325)
366 COG4615 PvdE ABC-type sideroph 99.5 4.1E-14 8.9E-19 126.6 10.8 140 77-222 322-488 (546)
367 KOG0054 Multidrug resistance-a 99.5 1.8E-14 4E-19 145.9 8.9 146 77-227 1138-1320(1381)
368 PTZ00243 ABC transporter; Prov 99.5 4.1E-14 9E-19 147.4 7.3 68 96-176 675-745 (1560)
369 KOG2702 Predicted panthothenat 99.5 1.4E-13 3E-18 115.4 7.4 126 104-229 116-263 (323)
370 cd03278 ABC_SMC_barmotin Barmo 99.4 5.4E-14 1.2E-18 116.8 2.8 126 98-227 14-162 (197)
371 TIGR00554 panK_bact pantothena 99.4 3.4E-13 7.4E-18 118.2 7.4 124 105-229 60-201 (290)
372 cd02025 PanK Pantothenate kina 99.4 4.9E-13 1.1E-17 113.0 7.5 118 109-229 1-133 (220)
373 COG4138 BtuD ABC-type cobalami 99.4 1.2E-12 2.6E-17 106.1 8.2 59 77-147 3-62 (248)
374 KOG0054 Multidrug resistance-a 99.4 7.4E-13 1.6E-17 134.4 7.7 135 74-222 515-683 (1381)
375 KOG0927 Predicted transporter 99.4 5.1E-13 1.1E-17 123.3 4.7 52 77-132 75-126 (614)
376 cd03272 ABC_SMC3_euk Eukaryoti 99.4 4.9E-13 1.1E-17 113.8 4.3 44 78-131 4-47 (243)
377 cd03270 ABC_UvrA_I The excisio 99.4 9E-13 1.9E-17 111.6 5.6 30 95-124 9-38 (226)
378 KOG2355 Predicted ABC-type tra 99.3 4.2E-12 9.1E-17 105.3 9.2 147 75-227 11-192 (291)
379 COG4178 ABC-type uncharacteriz 99.3 4.2E-12 9.2E-17 119.9 10.4 147 75-227 390-560 (604)
380 KOG0065 Pleiotropic drug resis 99.3 2.8E-12 6.1E-17 128.4 7.3 140 77-217 787-958 (1391)
381 COG4170 SapD ABC-type antimicr 99.3 6.1E-12 1.3E-16 104.7 7.7 152 75-226 1-202 (330)
382 KOG0062 ATPase component of AB 99.3 1.6E-11 3.4E-16 113.0 10.0 49 77-129 80-128 (582)
383 PRK09270 nucleoside triphospha 99.3 1.5E-11 3.3E-16 104.2 9.2 121 105-228 31-164 (229)
384 KOG0066 eIF2-interacting prote 99.3 5.6E-12 1.2E-16 114.4 6.4 61 74-140 583-643 (807)
385 cd03240 ABC_Rad50 The catalyti 99.2 2.5E-12 5.4E-17 107.3 2.6 123 101-227 17-167 (204)
386 cd00820 PEPCK_HprK Phosphoenol 99.2 9.5E-12 2.1E-16 93.5 4.9 79 95-182 3-85 (107)
387 cd03274 ABC_SMC4_euk Eukaryoti 99.2 2.2E-12 4.7E-17 108.4 1.3 43 78-130 6-48 (212)
388 cd03279 ABC_sbcCD SbcCD and ot 99.2 5.6E-12 1.2E-16 105.7 2.6 47 77-131 5-52 (213)
389 COG1072 CoaA Panthothenate kin 99.2 1.2E-11 2.6E-16 106.3 3.9 124 105-228 80-214 (283)
390 KOG0060 Long-chain acyl-CoA tr 99.2 2.2E-11 4.9E-16 113.3 5.7 61 75-140 431-491 (659)
391 COG1245 Predicted ATPase, RNas 99.1 3.7E-11 7.9E-16 109.5 5.0 58 75-140 340-397 (591)
392 cd03283 ABC_MutS-like MutS-lik 99.1 5E-11 1.1E-15 99.2 5.5 109 96-221 16-126 (199)
393 PLN02796 D-glycerate 3-kinase 99.1 1.7E-10 3.6E-15 103.0 7.0 118 96-216 81-234 (347)
394 COG1129 MglA ABC-type sugar tr 99.1 3.7E-10 8E-15 104.9 9.2 91 74-175 260-361 (500)
395 PRK05439 pantothenate kinase; 99.0 2.7E-10 5.9E-15 100.7 5.7 124 106-229 85-221 (311)
396 TIGR00235 udk uridine kinase. 99.0 4E-10 8.8E-15 94.0 6.1 107 105-215 4-120 (207)
397 cd03271 ABC_UvrA_II The excisi 99.0 4.7E-10 1E-14 97.1 6.4 32 96-127 10-41 (261)
398 COG3845 ABC-type uncharacteriz 99.0 3.3E-09 7.2E-14 97.5 11.9 98 74-177 254-363 (501)
399 cd03276 ABC_SMC6_euk Eukaryoti 99.0 1E-09 2.2E-14 91.3 7.8 127 97-227 12-158 (198)
400 cd03243 ABC_MutS_homologs The 99.0 2.3E-10 4.9E-15 95.1 2.8 33 99-131 21-53 (202)
401 KOG0064 Peroxisomal long-chain 99.0 2.9E-10 6.3E-15 105.2 3.5 57 78-140 482-538 (728)
402 cd03273 ABC_SMC2_euk Eukaryoti 99.0 1.8E-09 3.9E-14 92.7 8.0 30 107-139 25-54 (251)
403 PLN02318 phosphoribulokinase/u 99.0 1.3E-09 2.9E-14 103.0 7.5 110 107-229 65-181 (656)
404 cd03280 ABC_MutS2 MutS2 homolo 99.0 4.6E-10 1E-14 93.2 3.9 32 97-128 17-49 (200)
405 TIGR03238 dnd_assoc_3 dnd syst 98.9 5.1E-10 1.1E-14 103.4 3.2 46 96-146 21-68 (504)
406 COG2401 ABC-type ATPase fused 98.9 2.4E-09 5.1E-14 96.9 7.0 128 95-226 397-551 (593)
407 KOG0062 ATPase component of AB 98.9 1.3E-09 2.9E-14 100.5 4.8 62 74-140 359-420 (582)
408 PTZ00301 uridine kinase; Provi 98.9 2.6E-09 5.7E-14 89.7 6.2 117 108-229 4-131 (210)
409 cd02023 UMPK Uridine monophosp 98.9 4.2E-09 9.1E-14 87.0 7.0 103 109-215 1-113 (198)
410 PRK05480 uridine/cytidine kina 98.9 5.9E-09 1.3E-13 86.8 7.5 107 105-215 4-120 (209)
411 cd02026 PRK Phosphoribulokinas 98.9 6.2E-09 1.4E-13 90.7 7.8 111 109-228 1-119 (273)
412 TIGR02858 spore_III_AA stage I 98.9 1.6E-09 3.5E-14 94.2 3.7 37 108-147 112-149 (270)
413 COG0572 Udk Uridine kinase [Nu 98.8 1E-08 2.2E-13 86.1 7.6 116 106-229 7-132 (218)
414 PLN03046 D-glycerate 3-kinase; 98.8 1.3E-08 2.7E-13 93.0 8.8 108 107-217 212-347 (460)
415 cd03282 ABC_MSH4_euk MutS4 hom 98.8 5.9E-09 1.3E-13 87.1 5.5 37 96-132 18-54 (204)
416 PF00485 PRK: Phosphoribulokin 98.8 1E-09 2.2E-14 90.7 0.7 116 109-229 1-131 (194)
417 PRK00349 uvrA excinuclease ABC 98.8 1.2E-08 2.7E-13 101.8 8.4 44 76-128 613-656 (943)
418 KOG0066 eIF2-interacting prote 98.8 7.2E-09 1.6E-13 94.5 6.1 50 77-130 264-313 (807)
419 cd03275 ABC_SMC1_euk Eukaryoti 98.8 1.1E-08 2.4E-13 87.7 6.8 44 78-132 4-47 (247)
420 TIGR00630 uvra excinuclease AB 98.7 3.3E-08 7.2E-13 98.6 6.1 40 77-125 612-651 (924)
421 cd03284 ABC_MutS1 MutS1 homolo 98.7 1.6E-08 3.4E-13 85.2 3.3 70 96-175 20-89 (216)
422 KOG0065 Pleiotropic drug resis 98.6 1.9E-08 4.1E-13 101.5 4.1 124 94-217 128-288 (1391)
423 PRK07429 phosphoribulokinase; 98.6 6.9E-08 1.5E-12 86.2 7.3 112 108-228 9-128 (327)
424 cd01130 VirB11-like_ATPase Typ 98.6 2E-08 4.3E-13 82.5 3.6 45 97-144 15-60 (186)
425 cd03287 ABC_MSH3_euk MutS3 hom 98.6 2.2E-08 4.7E-13 84.8 3.4 48 96-146 20-68 (222)
426 PRK00635 excinuclease ABC subu 98.6 8.7E-08 1.9E-12 100.4 8.4 41 76-125 599-639 (1809)
427 cd03285 ABC_MSH2_euk MutS2 hom 98.6 2.4E-08 5.3E-13 84.4 2.6 34 96-129 19-52 (222)
428 PRK06002 fliI flagellum-specif 98.6 7.6E-08 1.6E-12 88.9 5.9 62 75-143 137-199 (450)
429 PRK09862 putative ATP-dependen 98.6 1E-07 2.2E-12 89.6 6.2 61 80-147 187-248 (506)
430 PRK09825 idnK D-gluconate kina 98.5 2.9E-07 6.3E-12 75.1 7.8 64 106-175 2-70 (176)
431 PF13555 AAA_29: P-loop contai 98.5 1.8E-07 3.8E-12 63.4 5.2 36 97-132 12-48 (62)
432 cd03227 ABC_Class2 ABC-type Cl 98.5 7.4E-08 1.6E-12 77.4 3.8 38 99-139 13-50 (162)
433 PLN02348 phosphoribulokinase 98.5 1.5E-07 3.2E-12 85.4 5.9 115 107-227 49-185 (395)
434 cd02024 NRK1 Nicotinamide ribo 98.5 2.7E-07 6E-12 76.1 6.6 114 109-229 1-135 (187)
435 TIGR00767 rho transcription te 98.5 5.3E-07 1.1E-11 82.2 8.9 53 77-132 130-193 (415)
436 cd03277 ABC_SMC5_euk Eukaryoti 98.5 2.3E-07 4.9E-12 78.0 5.9 34 98-132 15-48 (213)
437 cd03239 ABC_SMC_head The struc 98.5 9.1E-08 2E-12 78.3 3.3 26 107-132 22-47 (178)
438 cd02028 UMPK_like Uridine mono 98.4 3.8E-07 8.1E-12 74.6 4.9 103 109-214 1-112 (179)
439 cd03281 ABC_MSH5_euk MutS5 hom 98.4 2.4E-07 5.3E-12 77.8 3.9 30 100-129 20-51 (213)
440 PRK07196 fliI flagellum-specif 98.4 2.2E-07 4.7E-12 85.7 3.6 42 94-139 143-184 (434)
441 PRK07594 type III secretion sy 98.4 2.4E-07 5.3E-12 85.4 3.8 64 76-146 128-192 (433)
442 cd01136 ATPase_flagellum-secre 98.4 3.4E-07 7.3E-12 81.7 4.5 46 95-144 58-104 (326)
443 PRK07721 fliI flagellum-specif 98.3 4.4E-07 9.5E-12 84.0 4.6 47 95-145 147-194 (438)
444 PRK08533 flagellar accessory p 98.3 2.7E-07 5.8E-12 78.5 2.8 39 104-145 21-61 (230)
445 COG4240 Predicted kinase [Gene 98.3 1.9E-06 4.1E-11 72.8 7.2 110 103-215 46-177 (300)
446 PRK08149 ATP synthase SpaL; Va 98.3 9.1E-07 2E-11 81.5 5.5 50 95-148 140-193 (428)
447 TIGR01069 mutS2 MutS2 family p 98.3 8.1E-07 1.8E-11 87.5 5.0 39 99-140 313-353 (771)
448 PRK09099 type III secretion sy 98.3 1.2E-06 2.6E-11 81.0 5.5 49 94-146 151-200 (441)
449 PRK10078 ribose 1,5-bisphospho 98.3 6.5E-07 1.4E-11 73.4 3.4 26 107-132 2-27 (186)
450 COG1245 Predicted ATPase, RNas 98.2 1.3E-06 2.8E-11 80.2 5.1 52 82-140 79-130 (591)
451 TIGR02546 III_secr_ATP type II 98.2 9.3E-07 2E-11 81.5 4.0 47 95-145 134-181 (422)
452 KOG0063 RNAse L inhibitor, ABC 98.2 2.6E-06 5.6E-11 77.8 6.6 122 96-221 351-495 (592)
453 TIGR01026 fliI_yscN ATPase Fli 98.2 1.4E-06 3E-11 80.8 4.4 47 95-145 152-199 (440)
454 TIGR03497 FliI_clade2 flagella 98.2 2.3E-06 5E-11 78.7 5.5 48 95-146 126-174 (413)
455 PRK05922 type III secretion sy 98.2 1.9E-06 4.2E-11 79.4 5.0 46 96-145 147-193 (434)
456 TIGR03498 FliI_clade3 flagella 98.2 1.5E-06 3.2E-11 80.0 4.2 47 96-146 130-177 (418)
457 PRK06995 flhF flagellar biosyn 98.2 1.2E-06 2.6E-11 81.9 3.5 41 96-139 245-285 (484)
458 TIGR03496 FliI_clade1 flagella 98.2 2.5E-06 5.4E-11 78.4 5.4 62 78-146 112-174 (411)
459 TIGR02788 VirB11 P-type DNA tr 98.2 1.3E-06 2.8E-11 77.4 3.2 40 100-142 137-177 (308)
460 PRK00300 gmk guanylate kinase; 98.1 2E-06 4.4E-11 71.1 3.9 28 105-132 3-30 (205)
461 PRK05688 fliI flagellum-specif 98.1 2E-06 4.3E-11 79.7 3.9 38 94-132 156-193 (451)
462 PRK10416 signal recognition pa 98.1 5.3E-06 1.2E-10 73.9 6.3 67 105-174 112-191 (318)
463 PRK08972 fliI flagellum-specif 98.1 2.1E-06 4.6E-11 79.2 3.9 37 95-132 151-187 (444)
464 smart00534 MUTSac ATPase domai 98.1 8.2E-07 1.8E-11 72.8 1.0 29 109-140 1-30 (185)
465 cd02029 PRK_like Phosphoribulo 98.1 6.2E-06 1.3E-10 71.5 6.2 116 109-228 1-144 (277)
466 PRK06793 fliI flagellum-specif 98.1 3.4E-06 7.3E-11 77.8 4.9 63 77-146 130-193 (432)
467 PF13476 AAA_23: AAA domain; P 98.1 2.9E-06 6.2E-11 69.0 3.9 35 97-132 10-44 (202)
468 TIGR02322 phosphon_PhnN phosph 98.1 4.7E-06 1E-10 67.5 4.8 26 107-132 1-26 (179)
469 PRK08472 fliI flagellum-specif 98.1 3.9E-06 8.4E-11 77.5 4.5 47 96-146 147-194 (434)
470 PRK07960 fliI flagellum-specif 98.0 4E-06 8.6E-11 77.6 4.2 50 96-149 165-218 (455)
471 TIGR03263 guanyl_kin guanylate 98.0 3.3E-06 7E-11 68.4 3.1 26 107-132 1-26 (180)
472 PRK06315 type III secretion sy 98.0 4.3E-06 9.4E-11 77.3 3.9 48 94-144 152-200 (442)
473 PRK00635 excinuclease ABC subu 98.0 5.7E-06 1.2E-10 87.1 4.9 46 78-127 936-981 (1809)
474 PRK06936 type III secretion sy 98.0 5.2E-06 1.1E-10 76.7 4.0 42 94-139 150-191 (439)
475 PRK15453 phosphoribulokinase; 98.0 3.3E-05 7.1E-10 67.5 8.7 119 106-228 4-150 (290)
476 PRK07667 uridine kinase; Provi 98.0 1.5E-05 3.2E-10 65.9 6.2 101 106-211 16-130 (193)
477 PRK06820 type III secretion sy 98.0 7.6E-06 1.7E-10 75.7 4.8 48 94-145 151-199 (440)
478 PRK14723 flhF flagellar biosyn 98.0 4.4E-06 9.5E-11 81.7 3.3 41 96-139 174-214 (767)
479 PRK14721 flhF flagellar biosyn 98.0 6.5E-06 1.4E-10 75.8 4.0 28 104-131 188-215 (420)
480 PRK04863 mukB cell division pr 98.0 1.5E-05 3.4E-10 83.1 7.1 45 97-145 18-63 (1486)
481 PRK13477 bifunctional pantoate 97.9 1.2E-05 2.7E-10 75.7 5.5 56 83-143 265-320 (512)
482 cd03286 ABC_MSH6_euk MutS6 hom 97.9 1.4E-05 3E-10 67.6 4.7 36 96-131 19-54 (218)
483 PRK14722 flhF flagellar biosyn 97.9 1.1E-05 2.4E-10 73.2 4.1 38 95-132 125-162 (374)
484 PRK01889 GTPase RsgA; Reviewed 97.9 7.8E-06 1.7E-10 73.9 3.0 45 97-144 185-230 (356)
485 PRK15494 era GTPase Era; Provi 97.9 1.2E-05 2.5E-10 72.3 3.6 51 77-130 18-75 (339)
486 PRK10246 exonuclease subunit S 97.8 2.6E-05 5.6E-10 79.6 6.3 48 77-132 5-55 (1047)
487 PRK03846 adenylylsulfate kinas 97.8 2.2E-05 4.8E-10 65.0 4.6 41 105-148 22-64 (198)
488 TIGR00606 rad50 rad50. This fa 97.8 2.1E-05 4.6E-10 81.9 5.2 59 78-146 6-70 (1311)
489 TIGR03185 DNA_S_dndD DNA sulfu 97.8 3.5E-05 7.6E-10 74.9 6.4 47 77-131 5-52 (650)
490 TIGR00750 lao LAO/AO transport 97.8 1.6E-05 3.4E-10 70.2 3.6 37 96-132 23-59 (300)
491 cd00879 Sar1 Sar1 subfamily. 97.8 1.7E-05 3.7E-10 64.3 3.3 33 96-129 9-41 (190)
492 PRK13695 putative NTPase; Prov 97.8 1.4E-05 3.1E-10 64.6 2.6 24 109-132 2-25 (174)
493 PRK00889 adenylylsulfate kinas 97.8 5.2E-05 1.1E-09 61.2 5.9 39 105-146 2-42 (175)
494 PRK10463 hydrogenase nickel in 97.8 3.7E-05 8E-10 67.5 5.3 41 102-145 99-140 (290)
495 smart00382 AAA ATPases associa 97.8 2.4E-05 5.2E-10 58.6 3.6 27 106-132 1-27 (148)
496 TIGR00101 ureG urease accessor 97.8 3.7E-05 8E-10 64.0 4.8 29 109-140 3-31 (199)
497 TIGR00368 Mg chelatase-related 97.7 1.3E-05 2.8E-10 75.5 2.2 47 96-145 200-247 (499)
498 COG3950 Predicted ATP-binding 97.7 3.1E-05 6.6E-10 69.1 3.8 37 96-132 13-49 (440)
499 cd04155 Arl3 Arl3 subfamily. 97.7 2.7E-05 5.7E-10 62.0 3.2 24 107-130 14-37 (173)
500 TIGR00618 sbcc exonuclease Sbc 97.7 3.9E-05 8.4E-10 78.3 5.1 46 77-131 5-50 (1042)
No 1
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.1e-29 Score=212.87 Aligned_cols=146 Identities=18% Similarity=0.219 Sum_probs=106.9
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhc
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARR 154 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~ 154 (229)
.+++++++++.|+... +|+|+||+|.+||+++|+||||||||||||+|+|+++ |++|+ .++|+.+......+
T Consensus 2 ~~l~i~~v~~~f~~~~----vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~---p~~G~V~~~g~~v~~p~~~~ 74 (248)
T COG1116 2 ALLEIEGVSKSFGGVE----VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK---PTSGEVLLDGRPVTGPGPDI 74 (248)
T ss_pred ceEEEEeeEEEeCceE----EeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCcccCCCCCCE
Confidence 4689999999999855 9999999999999999999999999999999999999 99997 89998774333334
Q ss_pred CC-CcccCcchhhhHHHHHHccccccCCCCC---------------CCCCCchhhhhhccCCccE-----EEecCCeeee
Q 027060 155 GA-PWTFNPLLLLNCLKNLRNQGSVYAPSFD---------------HGVGDPVEDDILVGLQHKV-----VIVDGNYLFL 213 (229)
Q Consensus 155 ~~-~~~~~~~~~~tv~e~l~~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~rv-----Li~d~~~LlL 213 (229)
++ .+.+...+++||++|+.++......... .+..++.+.+++.|+++|| |+.+|++|+|
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLl 154 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLL 154 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEE
Confidence 43 4445556779999999998765321000 1334455555555555555 5666666666
Q ss_pred ccc-------CHHHHHHHHhhh
Q 027060 214 DGG-------VWKDVSSMFDEK 228 (229)
Q Consensus 214 DEP-------~~~~l~~~l~~~ 228 (229)
||| ++.++.+.+...
T Consensus 155 DEPFgALDalTR~~lq~~l~~l 176 (248)
T COG1116 155 DEPFGALDALTREELQDELLRL 176 (248)
T ss_pred cCCcchhhHHHHHHHHHHHHHH
Confidence 666 566666655544
No 2
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=4e-28 Score=200.86 Aligned_cols=145 Identities=21% Similarity=0.283 Sum_probs=117.9
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCH------H
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDP------K 148 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~------~ 148 (229)
++|+++||+|+||+.. +|++||++|.+||+++|+||+|||||||||||++|.. |++|. .++|+++ .
T Consensus 1 ~mi~i~~l~K~fg~~~----VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~---~~~G~I~i~g~~~~~~~~~~ 73 (240)
T COG1126 1 MMIEIKNLSKSFGDKE----VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE---PDSGSITVDGEDVGDKKDIL 73 (240)
T ss_pred CeEEEEeeeEEeCCeE----EecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC---CCCceEEECCEeccchhhHH
Confidence 3699999999999876 9999999999999999999999999999999999999 99997 8888643 2
Q ss_pred HHHhhcCC-CcccCcchhhhHHHHHHccccc----------------------------cCCCCCCCCCCchhhhhhccC
Q 027060 149 EAHARRGA-PWTFNPLLLLNCLKNLRNQGSV----------------------------YAPSFDHGVGDPVEDDILVGL 199 (229)
Q Consensus 149 ~~~~~~~~-~~~~~~~~~~tv~e~l~~~~~~----------------------------~~~~~~~~~~~~~~~~l~~~~ 199 (229)
..+...|+ .+.|+.++.+|++||+.++... |-...+.++.||++.++++.+
T Consensus 74 ~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM 153 (240)
T COG1126 74 KLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAM 153 (240)
T ss_pred HHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcC
Confidence 33444554 4455556669999999975321 112345788899999999999
Q ss_pred CccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 200 ~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+++++++|+++.-||+.-..++.+.+..
T Consensus 154 ~P~vmLFDEPTSALDPElv~EVL~vm~~ 181 (240)
T COG1126 154 DPKVMLFDEPTSALDPELVGEVLDVMKD 181 (240)
T ss_pred CCCEEeecCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999877777776643
No 3
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.95 E-value=2.2e-28 Score=217.58 Aligned_cols=135 Identities=20% Similarity=0.316 Sum_probs=109.0
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH-Hh
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA-HA 152 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~-~~ 152 (229)
++.|+++||+|.|++.. +++|+||+|++||+++|+||||||||||||+|+|+.. |++|. .++|+++... ..
T Consensus 3 ~~~l~i~~v~k~yg~~~----av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~---p~~G~I~l~G~~i~~lpp~ 75 (352)
T COG3842 3 KPALEIRNVSKSFGDFT----AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ---PSSGEILLDGEDITDVPPE 75 (352)
T ss_pred CceEEEEeeeeecCCee----EEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChh
Confidence 46799999999999765 8999999999999999999999999999999999999 99996 9999876442 33
Q ss_pred hcCCCcccCcch---hhhHHHHHHccccccCCCCC----------------CCCCCchhhhhhccCCccE-----EEecC
Q 027060 153 RRGAPWTFNPLL---LLNCLKNLRNQGSVYAPSFD----------------HGVGDPVEDDILVGLQHKV-----VIVDG 208 (229)
Q Consensus 153 ~~~~~~~~~~~~---~~tv~e~l~~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~rv-----Li~d~ 208 (229)
++++.++||.+. .+||.+|+.|+......... .+..++.+.+++.|+++|| |+.+|
T Consensus 76 kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P 155 (352)
T COG3842 76 KRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEP 155 (352)
T ss_pred hcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCc
Confidence 455666666654 49999999999884321111 2345666777787777776 88888
Q ss_pred Ceeeeccc
Q 027060 209 NYLFLDGG 216 (229)
Q Consensus 209 ~~LlLDEP 216 (229)
.+|+||||
T Consensus 156 ~vLLLDEP 163 (352)
T COG3842 156 KVLLLDEP 163 (352)
T ss_pred chhhhcCc
Confidence 88888888
No 4
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.94 E-value=2.3e-28 Score=216.41 Aligned_cols=135 Identities=17% Similarity=0.266 Sum_probs=107.6
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-HHh
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-AHA 152 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-~~~ 152 (229)
|..|+++||+|.|++.. +++++||+|+.||+++|+||||||||||||+|+|+.. |++|. .++|+++.. ...
T Consensus 1 M~~i~l~~v~K~yg~~~----~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~---~~~G~I~i~g~~vt~l~P~ 73 (338)
T COG3839 1 MAELELKNVRKSFGSFE----VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE---PTSGEILIDGRDVTDLPPE 73 (338)
T ss_pred CcEEEEeeeEEEcCCce----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChh
Confidence 45799999999999864 6899999999999999999999999999999999999 99997 899987655 345
Q ss_pred hcCCCcccCcchh---hhHHHHHHccccccCCCCC---------------CCCCCchhhhhhccCCccE-----EEecCC
Q 027060 153 RRGAPWTFNPLLL---LNCLKNLRNQGSVYAPSFD---------------HGVGDPVEDDILVGLQHKV-----VIVDGN 209 (229)
Q Consensus 153 ~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~rv-----Li~d~~ 209 (229)
.+++.++||.+.+ +||++|+.|+.....-..+ ....++.+.+++.|+++|| |+.+|.
T Consensus 74 ~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~ 153 (338)
T COG3839 74 KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPK 153 (338)
T ss_pred HCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCC
Confidence 5777778877654 9999999999876532111 1234455566666666665 777777
Q ss_pred eeeeccc
Q 027060 210 YLFLDGG 216 (229)
Q Consensus 210 ~LlLDEP 216 (229)
+++||||
T Consensus 154 v~L~DEP 160 (338)
T COG3839 154 VFLLDEP 160 (338)
T ss_pred EEEecCc
Confidence 7777777
No 5
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.4e-26 Score=193.86 Aligned_cols=145 Identities=22% Similarity=0.313 Sum_probs=119.4
Q ss_pred CeEEEeeeeEEc-CccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH-----
Q 027060 76 PVVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK----- 148 (229)
Q Consensus 76 ~~i~~~~ls~~y-~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~----- 148 (229)
.+|+++||++.| ++.. +|++|||+|++||+++|||+||||||||||+|+|+.. |++|+ .++|.++.
T Consensus 2 ~~i~~~nl~k~yp~~~~----aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d---~t~G~i~~~g~~i~~~~~k 74 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQ----ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD---PTSGEILFNGVQITKLKGK 74 (258)
T ss_pred ceEEEeeeeeecCCCce----eeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC---CCcceEEecccchhccchH
Confidence 479999999999 4444 8999999999999999999999999999999999999 99997 88886532
Q ss_pred -HHHhhcCCCcccCcchh---hhHHHHHHccccccCC-----------------------------------CCCCCCCC
Q 027060 149 -EAHARRGAPWTFNPLLL---LNCLKNLRNQGSVYAP-----------------------------------SFDHGVGD 189 (229)
Q Consensus 149 -~~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~-----------------------------------~~~~~~~~ 189 (229)
....+..+++.||.+.+ ++|++|+..+..-+.+ ..+.++.+
T Consensus 75 ~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQ 154 (258)
T COG3638 75 ELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQ 154 (258)
T ss_pred HHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhH
Confidence 12334456666666654 9999999977543321 23467789
Q ss_pred chhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 190 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 190 ~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
|+..+.++.+++++++-|+|+.-||+++.+++++++..
T Consensus 155 RVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~ 192 (258)
T COG3638 155 RVAIARALVQQPKIILADEPVASLDPESAKKVMDILKD 192 (258)
T ss_pred HHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHH
Confidence 99999999999999999999999999999999998864
No 6
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.94 E-value=4.6e-27 Score=198.67 Aligned_cols=142 Identities=19% Similarity=0.270 Sum_probs=111.6
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCH-----HHH
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDP-----KEA 150 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~-----~~~ 150 (229)
||+++||+|.|+++. +++|+||+|++||+++|+|||||||||+||+|+++++ |++|. +++|+++ ...
T Consensus 1 MI~~~nvsk~y~~~~----av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie---pt~G~I~i~g~~i~~~d~~~L 73 (309)
T COG1125 1 MIEFENVSKRYGNKK----AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE---PTSGEILIDGEDISDLDPVEL 73 (309)
T ss_pred CceeeeeehhcCCce----eeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC---CCCceEEECCeecccCCHHHH
Confidence 589999999999876 8999999999999999999999999999999999999 99997 9999863 345
Q ss_pred HhhcCC-CcccCcchhhhHHHHHHccccccCC----------------CCC-CCCCCchhhhhhccCCccE-----EEec
Q 027060 151 HARRGA-PWTFNPLLLLNCLKNLRNQGSVYAP----------------SFD-HGVGDPVEDDILVGLQHKV-----VIVD 207 (229)
Q Consensus 151 ~~~~~~-~~~~~~~~~~tv~e~l~~~~~~~~~----------------~~~-~~~~~~~~~~l~~~~~~rv-----Li~d 207 (229)
++++|+ .+....++.+||.+|+.....+..- ..+ ....+|.+.+++.|+++|| |..|
T Consensus 74 Rr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAad 153 (309)
T COG1125 74 RRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAAD 153 (309)
T ss_pred HHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcC
Confidence 666775 5566667779999999976544321 011 1345677777777777777 7777
Q ss_pred CCeeeeccc-------CHHHHHHHH
Q 027060 208 GNYLFLDGG-------VWKDVSSMF 225 (229)
Q Consensus 208 ~~~LlLDEP-------~~~~l~~~l 225 (229)
|+++++||| ++.++.+.|
T Consensus 154 P~ilLMDEPFgALDpI~R~~lQ~e~ 178 (309)
T COG1125 154 PPILLMDEPFGALDPITRKQLQEEI 178 (309)
T ss_pred CCeEeecCCccccChhhHHHHHHHH
Confidence 888888887 466665544
No 7
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.94 E-value=7.5e-27 Score=196.38 Aligned_cols=148 Identities=19% Similarity=0.293 Sum_probs=108.3
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH-------
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK------- 148 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~------- 148 (229)
+++++||+|.|+.....+.+|+++||+|++||+++|+|||||||||||++|.|+.. |++|. .++|.++.
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~---pt~G~v~i~g~d~~~l~~~~~ 77 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK---PTSGEVLINGKDLTKLSEKEL 77 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCceEEECCEEcCcCCHHHH
Confidence 47899999999865444668999999999999999999999999999999999999 99997 88886531
Q ss_pred HHHhhcCCCcccCcchh---hhHHHHHHccccccCCCC----------------CCCCCCchhhhhhccCCccE-----E
Q 027060 149 EAHARRGAPWTFNPLLL---LNCLKNLRNQGSVYAPSF----------------DHGVGDPVEDDILVGLQHKV-----V 204 (229)
Q Consensus 149 ~~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~rv-----L 204 (229)
...++..+++.||.+.+ +|+.||+.++..+..... .....++.+.+++.|+++|| |
T Consensus 78 ~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL 157 (226)
T COG1136 78 AKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARAL 157 (226)
T ss_pred HHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHH
Confidence 23445556777777765 999999997543321110 01112244556666666665 7
Q ss_pred EecCCeeeeccc-------CHHHHHHHHhh
Q 027060 205 IVDGNYLFLDGG-------VWKDVSSMFDE 227 (229)
Q Consensus 205 i~d~~~LlLDEP-------~~~~l~~~l~~ 227 (229)
+.+|+++++||| +.+.+.+++..
T Consensus 158 ~~~P~iilADEPTgnLD~~t~~~V~~ll~~ 187 (226)
T COG1136 158 INNPKIILADEPTGNLDSKTAKEVLELLRE 187 (226)
T ss_pred hcCCCeEEeeCccccCChHHHHHHHHHHHH
Confidence 777777777777 46666666654
No 8
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.4e-26 Score=197.53 Aligned_cols=147 Identities=19% Similarity=0.268 Sum_probs=104.8
Q ss_pred CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHH-
Q 027060 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAH- 151 (229)
Q Consensus 74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~- 151 (229)
++++|+++|+++.|++.. +|+||||+|++|++++|+||||||||||+|+|+|+++ |.+|. .++|.+.....
T Consensus 1 ~~~~i~v~nl~v~y~~~~----vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~---p~~G~i~~~g~~~~~~~~ 73 (254)
T COG1121 1 MMPMIEVENLTVSYGNRP----VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK---PSSGEIKIFGKPVRKRRK 73 (254)
T ss_pred CCcEEEEeeeEEEECCEe----eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc---CCcceEEEcccccccccc
Confidence 356899999999999654 8999999999999999999999999999999999999 99997 88888765444
Q ss_pred -hhcCC-Cccc--CcchhhhHHHHHHccccccCCCCC-------------------CCCCCchhhhhhccCCccE-----
Q 027060 152 -ARRGA-PWTF--NPLLLLNCLKNLRNQGSVYAPSFD-------------------HGVGDPVEDDILVGLQHKV----- 203 (229)
Q Consensus 152 -~~~~~-~~~~--~~~~~~tv~e~l~~~~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~rv----- 203 (229)
.++|+ |+.. +.....||+|-+.++...+...+. ....++...+++.|+++||
T Consensus 74 ~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARA 153 (254)
T COG1121 74 RLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARA 153 (254)
T ss_pred CCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHH
Confidence 34553 4432 222338999999987554432221 1122333344444444444
Q ss_pred EEecCCeeeeccc-------CHHHHHHHHhh
Q 027060 204 VIVDGNYLFLDGG-------VWKDVSSMFDE 227 (229)
Q Consensus 204 Li~d~~~LlLDEP-------~~~~l~~~l~~ 227 (229)
|+.+|++++|||| ++..+.+++++
T Consensus 154 L~~~p~lllLDEP~~gvD~~~~~~i~~lL~~ 184 (254)
T COG1121 154 LAQNPDLLLLDEPFTGVDVAGQKEIYDLLKE 184 (254)
T ss_pred hccCCCEEEecCCcccCCHHHHHHHHHHHHH
Confidence 5556666666666 57888888765
No 9
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.93 E-value=2.4e-26 Score=196.78 Aligned_cols=143 Identities=19% Similarity=0.228 Sum_probs=105.1
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----H
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-----A 150 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-----~ 150 (229)
+++++||+++|+++. +++|+||+|++|++++|+||||||||||||+|+|+++ |.+|. .++|+++.. .
T Consensus 2 ~L~~~~ls~~y~~~~----il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~---p~~G~V~l~g~~i~~~~~kel 74 (258)
T COG1120 2 MLEVENLSFGYGGKP----ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK---PKSGEVLLDGKDIASLSPKEL 74 (258)
T ss_pred eeEEEEEEEEECCee----EEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCCchhhcCHHHH
Confidence 589999999999776 8999999999999999999999999999999999999 99997 999987543 3
Q ss_pred HhhcCC-CcccCcchhhhHHHHHHccccccCCCCC-------------------CCCCCchhhhhhccCCccE-----EE
Q 027060 151 HARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFD-------------------HGVGDPVEDDILVGLQHKV-----VI 205 (229)
Q Consensus 151 ~~~~~~-~~~~~~~~~~tv~e~l~~~~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~rv-----Li 205 (229)
.+..++ ++.+..+..+||.|.+.++...+...|. ....++....++.|+++|+ |.
T Consensus 75 Ak~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALa 154 (258)
T COG1120 75 AKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALA 154 (258)
T ss_pred hhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHh
Confidence 444553 6666666669999999998765543332 0112233334444554444 56
Q ss_pred ecCCeeeeccc-------CHHHHHHHHh
Q 027060 206 VDGNYLFLDGG-------VWKDVSSMFD 226 (229)
Q Consensus 206 ~d~~~LlLDEP-------~~~~l~~~l~ 226 (229)
.++++++|||| .+-++.+++.
T Consensus 155 Q~~~iLLLDEPTs~LDi~~Q~evl~ll~ 182 (258)
T COG1120 155 QETPILLLDEPTSHLDIAHQIEVLELLR 182 (258)
T ss_pred cCCCEEEeCCCccccCHHHHHHHHHHHH
Confidence 66666666666 4555555554
No 10
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=1.1e-26 Score=195.29 Aligned_cols=134 Identities=27% Similarity=0.400 Sum_probs=104.3
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH----HH
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK----EA 150 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~----~~ 150 (229)
+++++++++|+||+.. +++||||+|++||+++||||||||||||+++|+|+++ |++|. .+.|+++. ..
T Consensus 3 ~lL~v~~l~k~FGGl~----Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~---P~~G~v~~~G~~it~l~p~~ 75 (250)
T COG0411 3 PLLEVRGLSKRFGGLT----AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK---PSSGTVIFRGRDITGLPPHR 75 (250)
T ss_pred ceeeeccceeecCCEE----EEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc---CCCceEEECCcccCCCCHHH
Confidence 5789999999999987 9999999999999999999999999999999999999 99997 89998753 34
Q ss_pred HhhcCCCcccCcchh---hhHHHHHHcccccc--------CCCCC-------------------CCCCCchhhhhhccCC
Q 027060 151 HARRGAPWTFNPLLL---LNCLKNLRNQGSVY--------APSFD-------------------HGVGDPVEDDILVGLQ 200 (229)
Q Consensus 151 ~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~--------~~~~~-------------------~~~~~~~~~~l~~~~~ 200 (229)
..+.|+...||.... +||+||+..+.... .+.+. ....+.....++.+++
T Consensus 76 iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~q 155 (250)
T COG0411 76 IARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQ 155 (250)
T ss_pred HHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHh
Confidence 567889888887654 99999999864321 11110 0112333333444433
Q ss_pred -----ccEEEecCCeeeeccc
Q 027060 201 -----HKVVIVDGNYLFLDGG 216 (229)
Q Consensus 201 -----~rvLi~d~~~LlLDEP 216 (229)
+|.|..+|.+|+||||
T Consensus 156 R~LEIArALa~~P~lLLLDEP 176 (250)
T COG0411 156 RRLEIARALATQPKLLLLDEP 176 (250)
T ss_pred HHHHHHHHHhcCCCEEEecCc
Confidence 4559999999999999
No 11
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=3.3e-26 Score=197.81 Aligned_cols=134 Identities=21% Similarity=0.332 Sum_probs=109.0
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCC---CHHH-HH
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ---DPKE-AH 151 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~---~~~~-~~ 151 (229)
+|+++++++.|+... +++||+++|+.||.++|+||||||||||||+|+|++. |++|. .++|+ |... ..
T Consensus 2 ~i~i~~~~~~~~~~~----a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~---p~~G~I~~~~~~l~D~~~~~~ 74 (345)
T COG1118 2 SIRINNVKKRFGAFG----ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET---PDAGRIRLNGRVLFDVSNLAV 74 (345)
T ss_pred ceeehhhhhhccccc----ccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC---CCCceEEECCEeccchhccch
Confidence 488999999999877 8999999999999999999999999999999999999 99997 88887 5444 33
Q ss_pred hhcCCCcccCcchh---hhHHHHHHccccccCCCCC-----------------CCCCCchhhhhhccCCccE-----EEe
Q 027060 152 ARRGAPWTFNPLLL---LNCLKNLRNQGSVYAPSFD-----------------HGVGDPVEDDILVGLQHKV-----VIV 206 (229)
Q Consensus 152 ~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~~~-----------------~~~~~~~~~~l~~~~~~rv-----Li~ 206 (229)
+.+.+++.||.+.+ +||.+|+.|+........+ .+..++.+..++.|+.+|| |..
T Consensus 75 ~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~ 154 (345)
T COG1118 75 RDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAV 154 (345)
T ss_pred hhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhc
Confidence 44567778877754 9999999999866522111 2455666677777776666 999
Q ss_pred cCCeeeecccC
Q 027060 207 DGNYLFLDGGV 217 (229)
Q Consensus 207 d~~~LlLDEP~ 217 (229)
+|++|+||||.
T Consensus 155 eP~vLLLDEPf 165 (345)
T COG1118 155 EPKVLLLDEPF 165 (345)
T ss_pred CCCeEeecCCc
Confidence 99999999994
No 12
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.93 E-value=6.3e-26 Score=186.01 Aligned_cols=145 Identities=17% Similarity=0.233 Sum_probs=117.6
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCH----HHHH
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDP----KEAH 151 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~----~~~~ 151 (229)
||++.+++|+|++.. .+++||||+++.|+++||+|+|||||||+||+|++++. |++|. +++|.+. ...+
T Consensus 1 Ml~v~~l~K~y~~~v---~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~---P~~G~v~idg~d~~~~p~~vr 74 (245)
T COG4555 1 MLEVTDLTKSYGSKV---QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI---PDSGKVTIDGVDTVRDPSFVR 74 (245)
T ss_pred CeeeeehhhhccCHH---hhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc---CCCceEEEeecccccChHHHh
Confidence 589999999999843 37899999999999999999999999999999999999 99997 8998763 3445
Q ss_pred hhcCCCc-ccCcchhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCCccE
Q 027060 152 ARRGAPW-TFNPLLLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQHKV 203 (229)
Q Consensus 152 ~~~~~~~-~~~~~~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~~rv 203 (229)
+.+|+.. .-..+.-+|+.||+.|...++. ..|+.++++++..+.++..++++
T Consensus 75 r~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i 154 (245)
T COG4555 75 RKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSI 154 (245)
T ss_pred hhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCe
Confidence 5666633 3333445999999998765442 23567888888888888888888
Q ss_pred EEecCCeeeecccCHHHHHHHHhh
Q 027060 204 VIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 204 Li~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+++|+|+.+||--..+.+++++..
T Consensus 155 ~vlDEP~sGLDi~~~r~~~dfi~q 178 (245)
T COG4555 155 LVLDEPTSGLDIRTRRKFHDFIKQ 178 (245)
T ss_pred EEEcCCCCCccHHHHHHHHHHHHH
Confidence 888888888888888888888753
No 13
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.93 E-value=7.5e-26 Score=198.64 Aligned_cols=146 Identities=23% Similarity=0.287 Sum_probs=108.6
Q ss_pred CCeEEEeeeeEEcC-ccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH----
Q 027060 75 IPVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK---- 148 (229)
Q Consensus 75 ~~~i~~~~ls~~y~-~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~---- 148 (229)
+.+++++||+|.|+ +.. +|+||||+|++|+++||+||||||||||+|+|+|++. |++|. .++|.++.
T Consensus 2 ~~~i~~~~l~k~~~~~~~----~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~---p~~G~i~i~G~~~~~~~~ 74 (293)
T COG1131 2 IEVIEVRNLTKKYGGDKT----ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK---PTSGEILVLGYDVVKEPA 74 (293)
T ss_pred CceeeecceEEEeCCCCE----EEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEEcCEeCccCHH
Confidence 45789999999999 565 8999999999999999999999999999999999999 99997 89997643
Q ss_pred HHHhhcCC-CcccCcchhhhHHHHHHccccccCCC---------------------------CCCCCCCchhhhhhccCC
Q 027060 149 EAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPS---------------------------FDHGVGDPVEDDILVGLQ 200 (229)
Q Consensus 149 ~~~~~~~~-~~~~~~~~~~tv~e~l~~~~~~~~~~---------------------------~~~~~~~~~~~~l~~~~~ 200 (229)
..+.++|+ ++.+..++.+|+.|++.+...++... ++.++.+++..+.++..+
T Consensus 75 ~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~ 154 (293)
T COG1131 75 KVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHD 154 (293)
T ss_pred HHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcC
Confidence 33455664 66666667799999999866555321 223444444444444455
Q ss_pred ccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 201 HKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 201 ~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
++++++|+|+.+||.-.+.++++++..
T Consensus 155 P~lliLDEPt~GLDp~~~~~~~~~l~~ 181 (293)
T COG1131 155 PELLILDEPTSGLDPESRREIWELLRE 181 (293)
T ss_pred CCEEEECCCCcCCCHHHHHHHHHHHHH
Confidence 555555555555555567777777654
No 14
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.9e-25 Score=193.40 Aligned_cols=148 Identities=18% Similarity=0.208 Sum_probs=119.4
Q ss_pred eEEEeeeeEEcCcc-ccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH------
Q 027060 77 VVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK------ 148 (229)
Q Consensus 77 ~i~~~~ls~~y~~~-~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~------ 148 (229)
||++++|+|.|... ...+.+++||||+|++||++||||.+|||||||+|+|++|.. |++|. .++|+++.
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~---PtsG~v~v~G~di~~l~~~~ 77 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER---PTSGSVFVDGQDLTALSEAE 77 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC---CCCceEEEcCEecccCChHH
Confidence 58999999999873 234669999999999999999999999999999999999999 99997 99997532
Q ss_pred HHHhhcCCCcccCcchh---hhHHHHHHccccccCC---------------------------CCCCCCCCchhhhhhcc
Q 027060 149 EAHARRGAPWTFNPLLL---LNCLKNLRNQGSVYAP---------------------------SFDHGVGDPVEDDILVG 198 (229)
Q Consensus 149 ~~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~---------------------------~~~~~~~~~~~~~l~~~ 198 (229)
....|+.+++.||.+.+ .||++|++|+..+... ..+.+++|++..++++.
T Consensus 78 Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa 157 (339)
T COG1135 78 LRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALA 157 (339)
T ss_pred HHHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHh
Confidence 12345556777777765 7899999998654321 23467788888888888
Q ss_pred CCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 199 ~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
.++++|+.|+.+.-||+.+.+.+.+++..
T Consensus 158 ~~P~iLL~DEaTSALDP~TT~sIL~LL~~ 186 (339)
T COG1135 158 NNPKILLCDEATSALDPETTQSILELLKD 186 (339)
T ss_pred cCCCEEEecCccccCChHHHHHHHHHHHH
Confidence 88888888888888888888888887754
No 15
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=4.6e-26 Score=190.23 Aligned_cols=135 Identities=21% Similarity=0.319 Sum_probs=104.5
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH----HH
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK----EA 150 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~----~~ 150 (229)
++++++||+..|+... +|++|||++++||+++|+|+||+|||||||+|+|+.+ +.+|. .++|+++. ..
T Consensus 2 ~mL~v~~l~~~YG~~~----~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~---~~~G~I~~~G~dit~~p~~~ 74 (237)
T COG0410 2 PMLEVENLSAGYGKIQ----ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR---PRSGRIIFDGEDITGLPPHE 74 (237)
T ss_pred CceeEEeEeeccccee----EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeeEEECCeecCCCCHHH
Confidence 5799999999999866 9999999999999999999999999999999999999 99997 89999753 44
Q ss_pred HhhcCCCcccCc---chhhhHHHHHHccccccCC-C---------CC-----CCCCCchhhhhhccCC-----ccEEEec
Q 027060 151 HARRGAPWTFNP---LLLLNCLKNLRNQGSVYAP-S---------FD-----HGVGDPVEDDILVGLQ-----HKVVIVD 207 (229)
Q Consensus 151 ~~~~~~~~~~~~---~~~~tv~e~l~~~~~~~~~-~---------~~-----~~~~~~~~~~l~~~~~-----~rvLi~d 207 (229)
+.+.|+.++++. ++.+||.|||..+...... . |+ +...++..+.++.|++ +|.|+.+
T Consensus 75 r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 75 RARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred HHhCCeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 667787776655 4459999999987554321 0 00 1112222334444443 5669999
Q ss_pred CCeeeecccC
Q 027060 208 GNYLFLDGGV 217 (229)
Q Consensus 208 ~~~LlLDEP~ 217 (229)
|.+|+||||+
T Consensus 155 PklLLLDEPs 164 (237)
T COG0410 155 PKLLLLDEPS 164 (237)
T ss_pred CCEEEecCCc
Confidence 9999999996
No 16
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.92 E-value=2.7e-25 Score=186.56 Aligned_cols=145 Identities=18% Similarity=0.214 Sum_probs=107.3
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---- 149 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---- 149 (229)
.++|++++|+++|+++. +++||||+|++||+++|+||+|||||||||+|.|+++ |++|+ .++|+++..
T Consensus 6 ~~~I~vr~v~~~fG~~~----Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~---P~~GeI~i~G~~i~~ls~~ 78 (263)
T COG1127 6 EPLIEVRGVTKSFGDRV----ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR---PDKGEILIDGEDIPQLSEE 78 (263)
T ss_pred cceEEEeeeeeecCCEE----EecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC---CCCCeEEEcCcchhccCHH
Confidence 56899999999999987 9999999999999999999999999999999999999 99997 999987422
Q ss_pred --HHhhcCCCcccCcch---hhhHHHHHHccccccCC-----------------------------CCCCCCCCchhhhh
Q 027060 150 --AHARRGAPWTFNPLL---LLNCLKNLRNQGSVYAP-----------------------------SFDHGVGDPVEDDI 195 (229)
Q Consensus 150 --~~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~l 195 (229)
...+..++..||.-. .+||+||+.++.+-+.. ..+.++..|++.++
T Consensus 79 ~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLAR 158 (263)
T COG1127 79 ELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALAR 158 (263)
T ss_pred HHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHH
Confidence 122334555555544 38999999987543321 12345555555555
Q ss_pred hccCCccEEEecCCeeeecccCHHHHHHHHh
Q 027060 196 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 226 (229)
Q Consensus 196 ~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~ 226 (229)
++...+.+|++|||+.+||+-....+.+++.
T Consensus 159 AialdPell~~DEPtsGLDPI~a~~~~~LI~ 189 (263)
T COG1127 159 AIALDPELLFLDEPTSGLDPISAGVIDELIR 189 (263)
T ss_pred HHhcCCCEEEecCCCCCCCcchHHHHHHHHH
Confidence 5555566666666666666656666666654
No 17
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.92 E-value=1.9e-25 Score=181.60 Aligned_cols=146 Identities=20% Similarity=0.216 Sum_probs=110.1
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH------
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE------ 149 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~------ 149 (229)
||+++||+|.|++.. .+|+||||+|++||++-|+||+|||||||+|+|.+..+ |+.|. .++|+++..
T Consensus 1 mI~f~~V~k~Y~~g~---~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~---pt~G~i~~~~~dl~~l~~~~i 74 (223)
T COG2884 1 MIRFENVSKAYPGGR---EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER---PTRGKILVNGHDLSRLKGREI 74 (223)
T ss_pred CeeehhhhhhcCCCc---hhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc---CCCceEEECCeeccccccccc
Confidence 589999999998753 38999999999999999999999999999999999999 99997 888886432
Q ss_pred HHhhcCCCcccCcchh---hhHHHHHHccccccCC---------------------------CCCCCCCCchhhhhhccC
Q 027060 150 AHARRGAPWTFNPLLL---LNCLKNLRNQGSVYAP---------------------------SFDHGVGDPVEDDILVGL 199 (229)
Q Consensus 150 ~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~---------------------------~~~~~~~~~~~~~l~~~~ 199 (229)
...|+.++.+||++.+ .||+||++++..+... ..+.+..|++..+.++..
T Consensus 75 P~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~ 154 (223)
T COG2884 75 PFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVN 154 (223)
T ss_pred chhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHcc
Confidence 1234445556666654 8999999998664321 233455566666666666
Q ss_pred CccEEEecCCeeeecccCHHHHHHHHhhh
Q 027060 200 QHKVVIVDGNYLFLDGGVWKDVSSMFDEK 228 (229)
Q Consensus 200 ~~rvLi~d~~~LlLDEP~~~~l~~~l~~~ 228 (229)
++.+|+-|+|+--||.+...+++++|.+.
T Consensus 155 ~P~vLlADEPTGNLDp~~s~~im~lfeei 183 (223)
T COG2884 155 QPAVLLADEPTGNLDPDLSWEIMRLFEEI 183 (223)
T ss_pred CCCeEeecCCCCCCChHHHHHHHHHHHHH
Confidence 66666666666666666677888888753
No 18
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.7e-24 Score=179.00 Aligned_cols=146 Identities=18% Similarity=0.216 Sum_probs=110.9
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCC-----ce-EecCCC--
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-----AS-SFDSQD-- 146 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~-----G~-~~~g~~-- 146 (229)
.+.++++||++.|+++. +|++||++|+++.+++||||+|||||||||+++.+.. ... |+ .++|++
T Consensus 5 ~~~~~~~~l~~yYg~~~----aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmnd---l~~~~r~~G~v~~~g~ni~ 77 (253)
T COG1117 5 IPAIEVRDLNLYYGDKH----ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMND---LIPGARVEGEVLLDGKNIY 77 (253)
T ss_pred cceeEecceeEEECchh----hhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcc---cCcCceEEEEEEECCeecc
Confidence 45799999999999877 9999999999999999999999999999999999876 443 65 777775
Q ss_pred -----HHHHHhhcCCCcccCcchhhhHHHHHHccccccCCC-------------------------------CCCCCCCc
Q 027060 147 -----PKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPS-------------------------------FDHGVGDP 190 (229)
Q Consensus 147 -----~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~-------------------------------~~~~~~~~ 190 (229)
+...++++|+.++-.++..++++||+.++.+++... .+.++.||
T Consensus 78 ~~~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQR 157 (253)
T COG1117 78 DPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQR 157 (253)
T ss_pred CCCCCHHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHH
Confidence 344566667655444444599999999987655321 22345566
Q ss_pred hhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 191 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 191 ~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+..++++..+++||++|+|+..||+-...++.+++.+
T Consensus 158 LcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~e 194 (253)
T COG1117 158 LCIARALAVKPEVLLMDEPTSALDPISTLKIEELITE 194 (253)
T ss_pred HHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHH
Confidence 6666666666666666777766766678888888765
No 19
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.91 E-value=5.5e-25 Score=194.23 Aligned_cols=146 Identities=20% Similarity=0.198 Sum_probs=102.4
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---- 149 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---- 149 (229)
.++|+++||+|.|++.. +|+|+||+|++||++||+||||||||||+++|+|+++ |++|. .++|.++..
T Consensus 5 ~~~i~i~~l~k~~~~~~----~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~---p~~G~v~i~G~~~~~~~~~ 77 (306)
T PRK13537 5 VAPIDFRNVEKRYGDKL----VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH---PDAGSISLCGEPVPSRARH 77 (306)
T ss_pred CceEEEEeEEEEECCeE----EEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEecccchHH
Confidence 45799999999998754 8999999999999999999999999999999999999 99997 889886432
Q ss_pred HHhhcCC-CcccCcchhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCCc
Q 027060 150 AHARRGA-PWTFNPLLLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQH 201 (229)
Q Consensus 150 ~~~~~~~-~~~~~~~~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~~ 201 (229)
.+.++++ ++.+..+..+|+.||+.+....+. ..++.++.+++..+.++..++
T Consensus 78 ~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P 157 (306)
T PRK13537 78 ARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDP 157 (306)
T ss_pred HHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCC
Confidence 2233443 333343444899999986432221 012233444444444455555
Q ss_pred cEEEecCCeeeecccCHHHHHHHHhh
Q 027060 202 KVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 202 rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
++|++|+|+..||...++.+++++..
T Consensus 158 ~lllLDEPt~gLD~~~~~~l~~~l~~ 183 (306)
T PRK13537 158 DVLVLDEPTTGLDPQARHLMWERLRS 183 (306)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 55555555555555567777777654
No 20
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.91 E-value=7.8e-25 Score=195.86 Aligned_cols=147 Identities=18% Similarity=0.161 Sum_probs=105.1
Q ss_pred CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH--H
Q 027060 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE--A 150 (229)
Q Consensus 74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~--~ 150 (229)
.+++|+++||+|.|++.. +|+|+||+|.+|+++||+||||||||||+++|+|+++ |++|. .++|.++.. .
T Consensus 38 ~~~~i~i~nl~k~y~~~~----~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~---p~~G~i~i~G~~~~~~~~ 110 (340)
T PRK13536 38 STVAIDLAGVSKSYGDKA----VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS---PDAGKITVLGVPVPARAR 110 (340)
T ss_pred CceeEEEEEEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCceEEEECCEECCcchH
Confidence 355899999999998765 8999999999999999999999999999999999999 99997 889976432 1
Q ss_pred HhhcCCCcccCc---chhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCC
Q 027060 151 HARRGAPWTFNP---LLLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQ 200 (229)
Q Consensus 151 ~~~~~~~~~~~~---~~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~ 200 (229)
..+..+++.+|. +..+|+.+|+.+....+. ..++.++.+++..+.++..+
T Consensus 111 ~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~ 190 (340)
T PRK13536 111 LARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALIND 190 (340)
T ss_pred HHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcC
Confidence 223334444443 344789999975322211 01223444555555555556
Q ss_pred ccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 201 HKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 201 ~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+++|++|+|+..||...++.+++++..
T Consensus 191 P~lLiLDEPt~gLD~~~r~~l~~~l~~ 217 (340)
T PRK13536 191 PQLLILDEPTTGLDPHARHLIWERLRS 217 (340)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 666666666666666678888887754
No 21
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.90 E-value=2.9e-24 Score=193.04 Aligned_cols=146 Identities=16% Similarity=0.189 Sum_probs=102.8
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-HHh
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-AHA 152 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-~~~ 152 (229)
+.+|+++||++.|++.. +|+++||+|++||+++|+|||||||||||++|+|+++ |++|. .++|+++.. ...
T Consensus 2 ~~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~---p~~G~I~i~g~~~~~~~~~ 74 (353)
T TIGR03265 2 SPYLSIDNIRKRFGAFT----ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER---QTAGTIYQGGRDITRLPPQ 74 (353)
T ss_pred CcEEEEEEEEEEeCCeE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC---CCceEEEECCEECCCCCHH
Confidence 45799999999998754 7999999999999999999999999999999999999 99997 888876432 112
Q ss_pred hcCCCcccCcch---hhhHHHHHHccccccCC---------------------------CCCCCCCCchhhhhhccCCcc
Q 027060 153 RRGAPWTFNPLL---LLNCLKNLRNQGSVYAP---------------------------SFDHGVGDPVEDDILVGLQHK 202 (229)
Q Consensus 153 ~~~~~~~~~~~~---~~tv~e~l~~~~~~~~~---------------------------~~~~~~~~~~~~~l~~~~~~r 202 (229)
++.+.+.||.+. .+|+.+|+.++...... .++.++.+++..+.++...++
T Consensus 75 ~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~ 154 (353)
T TIGR03265 75 KRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPG 154 (353)
T ss_pred HCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 344555555543 48999999986432110 112233444444444444555
Q ss_pred EEEecCCeeeecccCHHHHHHHHhh
Q 027060 203 VVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 203 vLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
++++|+|+..||...+.++++.+..
T Consensus 155 llLLDEP~s~LD~~~r~~l~~~L~~ 179 (353)
T TIGR03265 155 LLLLDEPLSALDARVREHLRTEIRQ 179 (353)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHH
Confidence 5555555555555567777776653
No 22
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=3.4e-24 Score=192.79 Aligned_cols=96 Identities=18% Similarity=0.195 Sum_probs=77.5
Q ss_pred CCeEEEeeeeEEc-CccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH-H
Q 027060 75 IPVVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA-H 151 (229)
Q Consensus 75 ~~~i~~~~ls~~y-~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~-~ 151 (229)
|.+|+++|+++.| ++.. +|+++||+|++||+++|+||||||||||||+|+|+++ |++|. .++|+++... .
T Consensus 1 m~~l~i~~l~~~~~~~~~----~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~---p~~G~I~~~g~~i~~~~~ 73 (356)
T PRK11650 1 MAGLKLQAVRKSYDGKTQ----VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER---ITSGEIWIGGRVVNELEP 73 (356)
T ss_pred CCEEEEEeEEEEeCCCCE----EEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC---CCceEEEECCEECCCCCH
Confidence 3479999999999 6544 8999999999999999999999999999999999999 99997 8888764221 1
Q ss_pred hhcCCCcccCcc---hhhhHHHHHHcccc
Q 027060 152 ARRGAPWTFNPL---LLLNCLKNLRNQGS 177 (229)
Q Consensus 152 ~~~~~~~~~~~~---~~~tv~e~l~~~~~ 177 (229)
.++.+.+.||.+ +.+|+.+|+.++..
T Consensus 74 ~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~ 102 (356)
T PRK11650 74 ADRDIAMVFQNYALYPHMSVRENMAYGLK 102 (356)
T ss_pred HHCCEEEEeCCccccCCCCHHHHHHhHHh
Confidence 224555555554 34899999998654
No 23
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=3.4e-24 Score=192.44 Aligned_cols=96 Identities=18% Similarity=0.212 Sum_probs=78.5
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH-Hh
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA-HA 152 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~-~~ 152 (229)
+++|+++||++.|++.. +|+|+||+|.+||+++|+|||||||||||++|+|+++ |++|. .++|+++... ..
T Consensus 4 ~~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~~~g~~i~~~~~~ 76 (351)
T PRK11432 4 KNFVVLKNITKRFGSNT----VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK---PTEGQIFIDGEDVTHRSIQ 76 (351)
T ss_pred CcEEEEEeEEEEECCeE----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC---CCceEEEECCEECCCCCHH
Confidence 55899999999998754 7999999999999999999999999999999999999 99997 8888764321 22
Q ss_pred hcCCCcccCcc---hhhhHHHHHHcccc
Q 027060 153 RRGAPWTFNPL---LLLNCLKNLRNQGS 177 (229)
Q Consensus 153 ~~~~~~~~~~~---~~~tv~e~l~~~~~ 177 (229)
++.+.+.||.+ +.+|+.+|+.++..
T Consensus 77 ~r~ig~vfQ~~~lfp~~tv~eNi~~~l~ 104 (351)
T PRK11432 77 QRDICMVFQSYALFPHMSLGENVGYGLK 104 (351)
T ss_pred HCCEEEEeCCcccCCCCCHHHHHHHHHh
Confidence 34455555554 34899999998654
No 24
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.90 E-value=9e-24 Score=192.11 Aligned_cols=136 Identities=23% Similarity=0.273 Sum_probs=107.9
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCH----HH
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDP----KE 149 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~----~~ 149 (229)
.+.+++++++|.|++.. ++++|||+|.+||+.+|+|.||||||||+++|.|+++ |++|+ +++|+.+ ..
T Consensus 2 ~~~l~~~~itK~f~~~~----And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~---P~~GeI~v~G~~v~~~sP~ 74 (501)
T COG3845 2 EPALEMRGITKRFPGVV----ANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ---PDSGEIRVDGKEVRIKSPR 74 (501)
T ss_pred CceEEEeccEEEcCCEE----ecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc---CCcceEEECCEEeccCCHH
Confidence 46799999999999765 9999999999999999999999999999999999999 99997 9999853 23
Q ss_pred HHhhcCCCcccCcchh---hhHHHHHHccccccC-CCCC----------------C-CCCCchhhhhhccCCccE-----
Q 027060 150 AHARRGAPWTFNPLLL---LNCLKNLRNQGSVYA-PSFD----------------H-GVGDPVEDDILVGLQHKV----- 203 (229)
Q Consensus 150 ~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~-~~~~----------------~-~~~~~~~~~l~~~~~~rv----- 203 (229)
...+.|++++||.+.+ +||.||+.++..... ...+ . -..+.....+++|+++||
T Consensus 75 dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKa 154 (501)
T COG3845 75 DAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKA 154 (501)
T ss_pred HHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHH
Confidence 4567788888888866 999999998864321 1111 0 012333455667777777
Q ss_pred EEecCCeeeecccC
Q 027060 204 VIVDGNYLFLDGGV 217 (229)
Q Consensus 204 Li~d~~~LlLDEP~ 217 (229)
|..++++|+||||+
T Consensus 155 Lyr~a~iLILDEPT 168 (501)
T COG3845 155 LYRGARLLILDEPT 168 (501)
T ss_pred HhcCCCEEEEcCCc
Confidence 78888888888884
No 25
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.90 E-value=7.7e-24 Score=178.11 Aligned_cols=150 Identities=17% Similarity=0.208 Sum_probs=106.0
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH---
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA--- 150 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~--- 150 (229)
+++|+++|+++.|+.+.....++++|||+|.+||++||+|++|||||||.|+|+|+.+ |++|. .++|......
T Consensus 1 ~~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~---p~~G~I~~~G~~~~~~~~~ 77 (252)
T COG1124 1 MTLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK---PSSGSILLDGKPLAPKKRA 77 (252)
T ss_pred CceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC---CCCceEEECCcccCccccc
Confidence 3579999999999887555568999999999999999999999999999999999999 99997 8999754321
Q ss_pred -HhhcCCCcccCcch-----hhhHHHHHHccccccCC--------------CCCCCCCCchhhhhhccCCccE-----EE
Q 027060 151 -HARRGAPWTFNPLL-----LLNCLKNLRNQGSVYAP--------------SFDHGVGDPVEDDILVGLQHKV-----VI 205 (229)
Q Consensus 151 -~~~~~~~~~~~~~~-----~~tv~e~l~~~~~~~~~--------------~~~~~~~~~~~~~l~~~~~~rv-----Li 205 (229)
.....+.++||++. ..||.+.|..+...+.- ....+..++.+.+++.|+.+|| |+
T Consensus 78 ~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~ 157 (252)
T COG1124 78 KAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALI 157 (252)
T ss_pred hhhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhc
Confidence 23344566777653 37777777765543110 0112233444445555555444 66
Q ss_pred ecCCeeeeccc-------CHHHHHHHHhh
Q 027060 206 VDGNYLFLDGG-------VWKDVSSMFDE 227 (229)
Q Consensus 206 ~d~~~LlLDEP-------~~~~l~~~l~~ 227 (229)
.+|.+|+|||| .+.++.+++.+
T Consensus 158 ~~PklLIlDEptSaLD~siQa~IlnlL~~ 186 (252)
T COG1124 158 PEPKLLILDEPTSALDVSVQAQILNLLLE 186 (252)
T ss_pred cCCCEEEecCchhhhcHHHHHHHHHHHHH
Confidence 66666666666 47777777654
No 26
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.90 E-value=4.7e-24 Score=190.95 Aligned_cols=148 Identities=21% Similarity=0.236 Sum_probs=99.8
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----H
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-----A 150 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-----~ 150 (229)
||+++||++.|++......+|+|+||+|++||++||+|+||||||||+|+|+|+++ |++|. .++|+++.. .
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~---p~~G~I~i~G~~i~~~~~~~l 77 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTSGSVIVDGQDLTTLSNSEL 77 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCHHHH
Confidence 48999999999642112348999999999999999999999999999999999999 99997 888876421 1
Q ss_pred -HhhcCCCcccCcch---hhhHHHHHHccccccCC---------------------------CCCCCCCCchhhhhhccC
Q 027060 151 -HARRGAPWTFNPLL---LLNCLKNLRNQGSVYAP---------------------------SFDHGVGDPVEDDILVGL 199 (229)
Q Consensus 151 -~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~~---------------------------~~~~~~~~~~~~~l~~~~ 199 (229)
..+..+.+.||.+. ..|+.+|+.++...... .++.++.+++..+.++..
T Consensus 78 ~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~ 157 (343)
T TIGR02314 78 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALAS 157 (343)
T ss_pred HHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHh
Confidence 12345555555543 37999999875432110 112233444444444444
Q ss_pred CccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 200 ~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
++++|++|+++..||..+...+.+++..
T Consensus 158 ~P~iLLlDEPts~LD~~t~~~i~~lL~~ 185 (343)
T TIGR02314 158 NPKVLLCDEATSALDPATTQSILELLKE 185 (343)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 4455555555555555567777776654
No 27
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.90 E-value=7.2e-24 Score=178.34 Aligned_cols=143 Identities=16% Similarity=0.191 Sum_probs=112.0
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-HHhhc
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-AHARR 154 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-~~~~~ 154 (229)
.+++++|+|+|+++. +++|+||++++|+++|++|+|||||||++|+|.|++. |++|. .|+|.++.. ...++
T Consensus 2 ~L~ie~vtK~Fg~k~----av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle---~~~G~I~~~g~~~~~~~~~rI 74 (300)
T COG4152 2 ALEIEGVTKSFGDKK----AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE---PTEGEITWNGGPLSQEIKNRI 74 (300)
T ss_pred ceEEecchhccCcee----eecceeeeecCCeEEEeecCCCCCccchHHHHhccCC---ccCceEEEcCcchhhhhhhhc
Confidence 489999999999987 9999999999999999999999999999999999999 99997 999988654 45567
Q ss_pred CC-CcccCcchhhhHHHHHHccccccCC---------------------------CCCCCCCCchhhhhhccCCccEEEe
Q 027060 155 GA-PWTFNPLLLLNCLKNLRNQGSVYAP---------------------------SFDHGVGDPVEDDILVGLQHKVVIV 206 (229)
Q Consensus 155 ~~-~~~~~~~~~~tv~e~l~~~~~~~~~---------------------------~~~~~~~~~~~~~l~~~~~~rvLi~ 206 (229)
|+ |..-..++-+||.|.+.|...++.- ..++++.|++...-++...+.++|+
T Consensus 75 GyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlIL 154 (300)
T COG4152 75 GYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLIL 154 (300)
T ss_pred ccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEe
Confidence 75 5555566669999999986554321 1224455555555556667777777
Q ss_pred cCCeeeecccCHHHHHHHHh
Q 027060 207 DGNYLFLDGGVWKDVSSMFD 226 (229)
Q Consensus 207 d~~~LlLDEP~~~~l~~~l~ 226 (229)
|+|+.+||+-+.+-+.+.+.
T Consensus 155 DEPFSGLDPVN~elLk~~I~ 174 (300)
T COG4152 155 DEPFSGLDPVNVELLKDAIF 174 (300)
T ss_pred cCCccCCChhhHHHHHHHHH
Confidence 77777777777777766554
No 28
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.90 E-value=5.2e-24 Score=176.23 Aligned_cols=146 Identities=14% Similarity=0.114 Sum_probs=114.7
Q ss_pred eEEEeeeeEEcCccc--cccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHh--cccCCCCce-EecCCCHHHHH
Q 027060 77 VVEARCMDEVYDALA--QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKAS-SFDSQDPKEAH 151 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~--~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll--~~~~p~~G~-~~~g~~~~~~~ 151 (229)
.|+++||++.|++.. ....+|+++||+|.+|++++|+||||||||||+++|+|++ + |++|. .++|+++....
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~---~~~G~i~~~g~~~~~~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL---GVSGEVLINGRPLDKRS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCceEEEECCEeCchHh
Confidence 589999999997510 0112899999999999999999999999999999999999 9 99997 88888754322
Q ss_pred hhcCCCcccCcc---hhhhHHHHHHccccccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 152 ARRGAPWTFNPL---LLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 152 ~~~~~~~~~~~~---~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
.+..+.+.++.. ..+++.+|+.+..... .++.++.+++..+.++..+++++++|+|+..||...++.+.+++..
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~--~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~ 156 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAKLR--GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRR 156 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHHhc--cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 223344444433 3379999998754332 5677888888888888888999999999999999889999888764
No 29
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=4.3e-24 Score=174.31 Aligned_cols=136 Identities=23% Similarity=0.329 Sum_probs=111.4
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----HH
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-----AH 151 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-----~~ 151 (229)
|+++|+++.|++.. +++++||+|++|++++|+|+||||||||+++|+|+++ |++|. .++|.++.. ..
T Consensus 1 i~~~~l~~~~~~~~----~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (178)
T cd03229 1 LELKNVSKRYGQKT----VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE---PDSGSILIDGEDLTDLEDELPP 73 (178)
T ss_pred CEEEEEEEEECCeE----EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccchhHHH
Confidence 47899999998654 7999999999999999999999999999999999999 99997 888865421 12
Q ss_pred hhcCCCcccCcc---hhhhHHHHHHccccccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 152 ARRGAPWTFNPL---LLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 152 ~~~~~~~~~~~~---~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
.+..+.+.++.+ ...++.+|+.+. ++.++.+++..+.++..+++++++|+|+..||...+..+.+++..
T Consensus 74 ~~~~i~~~~q~~~~~~~~t~~~~l~~~-------lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~ 145 (178)
T cd03229 74 LRRRIGMVFQDFALFPHLTVLENIALG-------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKS 145 (178)
T ss_pred HhhcEEEEecCCccCCCCCHHHheeec-------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 233444444443 236899998764 677888998889999999999999999999999999998888764
No 30
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.90 E-value=9.8e-24 Score=172.78 Aligned_cols=136 Identities=21% Similarity=0.282 Sum_probs=111.9
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----H
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----A 150 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----~ 150 (229)
++|+++|+++.| +++++||+|++|++++|+|+||||||||+++|+|+++ |++|. .++|.++.. .
T Consensus 3 ~~l~~~~l~~~~--------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~ 71 (182)
T cd03215 3 PVLEVRGLSVKG--------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP---PASGEITLDGKPVTRRSPRD 71 (182)
T ss_pred cEEEEeccEEEe--------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCccCHHH
Confidence 479999999998 5889999999999999999999999999999999999 99997 888875421 1
Q ss_pred HhhcCCCcccCc------chhhhHHHHHHccccccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHH
Q 027060 151 HARRGAPWTFNP------LLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSM 224 (229)
Q Consensus 151 ~~~~~~~~~~~~------~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~ 224 (229)
..+..+.+.+|. ...+++.+|+.+... ++.++.+++..+.++..+++++++|+|+..||...++.+.++
T Consensus 72 ~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~-----LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~ 146 (182)
T cd03215 72 AIRAGIAYVPEDRKREGLVLDLSVAENIALSSL-----LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRL 146 (182)
T ss_pred HHhCCeEEecCCcccCcccCCCcHHHHHHHHhh-----cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHH
Confidence 223344555543 223799999987532 677888898888888889999999999999999999998888
Q ss_pred Hhh
Q 027060 225 FDE 227 (229)
Q Consensus 225 l~~ 227 (229)
+..
T Consensus 147 l~~ 149 (182)
T cd03215 147 IRE 149 (182)
T ss_pred HHH
Confidence 764
No 31
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.90 E-value=6.3e-24 Score=176.72 Aligned_cols=142 Identities=18% Similarity=0.169 Sum_probs=97.9
Q ss_pred EEeeeeEEcCc-cccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhcCC
Q 027060 79 EARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARRGA 156 (229)
Q Consensus 79 ~~~~ls~~y~~-~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~~~ 156 (229)
+++|+++.|++ .. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++|. .++|.++.....+..+
T Consensus 1 ~~~~l~~~~~~~~~----~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~i 73 (205)
T cd03226 1 RIENISFSYKKGTE----ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK---ESSGSILLNGKPIKAKERRKSI 73 (205)
T ss_pred CcccEEEEeCCcCc----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEhhhHHhhcce
Confidence 36899999976 43 8999999999999999999999999999999999999 99997 8888876433333345
Q ss_pred CcccCcc----hhhhHHHHHHccccccCC-----------------------CCCCCCCCchhhhhhccCCccEEEecCC
Q 027060 157 PWTFNPL----LLLNCLKNLRNQGSVYAP-----------------------SFDHGVGDPVEDDILVGLQHKVVIVDGN 209 (229)
Q Consensus 157 ~~~~~~~----~~~tv~e~l~~~~~~~~~-----------------------~~~~~~~~~~~~~l~~~~~~rvLi~d~~ 209 (229)
.+.+|.+ ...++.+|+.++...... .++.++.+++..+.++..+++++++|+|
T Consensus 74 ~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 153 (205)
T cd03226 74 GYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEP 153 (205)
T ss_pred EEEecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 5555553 236999999764321100 1122334444444444445555555555
Q ss_pred eeeecccCHHHHHHHHhh
Q 027060 210 YLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 210 ~LlLDEP~~~~l~~~l~~ 227 (229)
+..||...++.+.+++..
T Consensus 154 t~~LD~~~~~~l~~~l~~ 171 (205)
T cd03226 154 TSGLDYKNMERVGELIRE 171 (205)
T ss_pred CccCCHHHHHHHHHHHHH
Confidence 555555567777777654
No 32
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.90 E-value=6.4e-24 Score=178.02 Aligned_cols=95 Identities=21% Similarity=0.352 Sum_probs=71.7
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH------
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA------ 150 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~------ 150 (229)
|+++||++.|++......+|+++||+|++|++++|+||||||||||+++|+|+++ |++|. .++|.++...
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 77 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PTSGEVRVDGTDISKLSEKELA 77 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC---CCceeEEECCEehhhcchhHHH
Confidence 4789999999762100128999999999999999999999999999999999999 99997 8888765321
Q ss_pred -HhhcCCCcccCcc---hhhhHHHHHHcc
Q 027060 151 -HARRGAPWTFNPL---LLLNCLKNLRNQ 175 (229)
Q Consensus 151 -~~~~~~~~~~~~~---~~~tv~e~l~~~ 175 (229)
..+..+.+.+|.. ..+|+.+|+.++
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 106 (218)
T cd03255 78 AFRRRHIGFVFQSFNLLPDLTALENVELP 106 (218)
T ss_pred HHHhhcEEEEeeccccCCCCcHHHHHHHH
Confidence 1123344444433 336899998764
No 33
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=6.9e-24 Score=179.96 Aligned_cols=91 Identities=23% Similarity=0.334 Sum_probs=72.1
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH------H
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE------A 150 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~------~ 150 (229)
|+++|+++.|++.. +|+|+||+|.+||+++|+||||||||||+++|+|+++ |++|. .++|.++.. .
T Consensus 1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~~ 73 (235)
T cd03261 1 IELRGLTKSFGGRT----VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR---PDSGEVLIDGEDISGLSEAELY 73 (235)
T ss_pred CeEEEEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccChhhHH
Confidence 47899999998654 8999999999999999999999999999999999999 99997 888865321 1
Q ss_pred HhhcCCCcccCcc---hhhhHHHHHHcc
Q 027060 151 HARRGAPWTFNPL---LLLNCLKNLRNQ 175 (229)
Q Consensus 151 ~~~~~~~~~~~~~---~~~tv~e~l~~~ 175 (229)
..+..+.+.+|.. ..+|+.+|+.++
T Consensus 74 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~ 101 (235)
T cd03261 74 RLRRRMGMLFQSGALFDSLTVFENVAFP 101 (235)
T ss_pred HHhcceEEEccCcccCCCCcHHHHHHHH
Confidence 2233444444443 337999999764
No 34
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.90 E-value=8.9e-24 Score=177.04 Aligned_cols=94 Identities=20% Similarity=0.234 Sum_probs=73.1
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH------
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE------ 149 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~------ 149 (229)
+|+++|+++.|++.. ..+|+++||+|++||+++|+||||||||||+++|+|+++ |++|. .++|+++..
T Consensus 1 ~l~~~~l~~~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 75 (216)
T TIGR00960 1 MIRFEQVSKAYPGGH--QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK---PTRGKIRFNGQDLTRLRGREI 75 (216)
T ss_pred CeEEEEEEEEecCCC--eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEehhhcChhHH
Confidence 488999999996421 127899999999999999999999999999999999999 99997 888876532
Q ss_pred HHhhcCCCcccCcch---hhhHHHHHHcc
Q 027060 150 AHARRGAPWTFNPLL---LLNCLKNLRNQ 175 (229)
Q Consensus 150 ~~~~~~~~~~~~~~~---~~tv~e~l~~~ 175 (229)
...+..+.+.+|.+. .+|+.+|+.++
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 104 (216)
T TIGR00960 76 PFLRRHIGMVFQDHRLLSDRTVYDNVAFP 104 (216)
T ss_pred HHHHHhceEEecCccccccccHHHHHHHH
Confidence 112234444454432 37999999764
No 35
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=3.3e-24 Score=175.35 Aligned_cols=149 Identities=17% Similarity=0.239 Sum_probs=110.8
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhh
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHAR 153 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~ 153 (229)
|.++.+++++..|.++. ..+|+|+|++|.+||.++++||+||||||||++++|+.. |..|. .++|..+...-..
T Consensus 1 M~~l~~~~~sl~y~g~~--~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~---P~~G~i~l~~r~i~gPgae 75 (259)
T COG4525 1 MCMLNVSHLSLSYEGKP--RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT---PSRGSIQLNGRRIEGPGAE 75 (259)
T ss_pred CceeehhheEEecCCcc--hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC---cccceEEECCEeccCCCcc
Confidence 35688999999998864 347999999999999999999999999999999999999 99997 8888877655556
Q ss_pred cCC-CcccCcchhhhHHHHHHccccccCCCCC---------------CCCCCchhhhhhccCCccE-----EEecCCeee
Q 027060 154 RGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFD---------------HGVGDPVEDDILVGLQHKV-----VIVDGNYLF 212 (229)
Q Consensus 154 ~~~-~~~~~~~~~~tv~e~l~~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~rv-----Li~d~~~Ll 212 (229)
+|+ .+.....+++++.+|+.|+..+..-... .+..++..-.++.|+.+|+ |..||.+|+
T Consensus 76 rgvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~Ll 155 (259)
T COG4525 76 RGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLL 155 (259)
T ss_pred ceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEe
Confidence 665 4444556789999999998765432110 1222333444555555544 777888888
Q ss_pred eccc-------CHHHHHHHHhhh
Q 027060 213 LDGG-------VWKDVSSMFDEK 228 (229)
Q Consensus 213 LDEP-------~~~~l~~~l~~~ 228 (229)
|||| +++++.+++-..
T Consensus 156 LDEPfgAlDa~tRe~mQelLldl 178 (259)
T COG4525 156 LDEPFGALDALTREQMQELLLDL 178 (259)
T ss_pred ecCchhhHHHHHHHHHHHHHHHH
Confidence 8888 566666665443
No 36
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=9.3e-24 Score=171.58 Aligned_cols=134 Identities=21% Similarity=0.289 Sum_probs=110.0
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH--HHhhc
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE--AHARR 154 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~--~~~~~ 154 (229)
|+++|+++.|++.. +|+++||++.+||+++|+|+||||||||+++|+|+++ |++|. .++|.++.. ...+.
T Consensus 1 l~~~~l~~~~~~~~----~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (173)
T cd03230 1 IEVRNLSKRYGKKT----ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDIKKEPEEVKR 73 (173)
T ss_pred CEEEEEEEEECCee----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccchHhhhc
Confidence 46899999997643 7999999999999999999999999999999999999 99997 888875422 12223
Q ss_pred CCCcccCcc---hhhhHHHHHHccccccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 155 GAPWTFNPL---LLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 155 ~~~~~~~~~---~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
.+.+.+|.. ..+++.+|+. ++.++.+++..+.++..+++++++|+|+..||...+..+.+++..
T Consensus 74 ~i~~~~q~~~~~~~~tv~~~~~---------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~ 140 (173)
T cd03230 74 RIGYLPEEPSLYENLTVRENLK---------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRE 140 (173)
T ss_pred cEEEEecCCccccCCcHHHHhh---------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 344444443 2369999986 667888888888889999999999999999999999999888764
No 37
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=3.4e-23 Score=176.21 Aligned_cols=146 Identities=16% Similarity=0.145 Sum_probs=108.4
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH----HH
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK----EA 150 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~----~~ 150 (229)
++++++++++.|++. ..+|+++||+|.+|++++|+|+||||||||+++|+|+++ |++|. .++|.+.. ..
T Consensus 2 ~~i~~~~l~~~y~~~---~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~---p~~G~v~~~g~~~~~~~~~~ 75 (235)
T COG1122 2 RMIEAENLSFRYPGR---KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK---PTSGEVLVDGLDTSSEKSLL 75 (235)
T ss_pred ceEEEEEEEEEcCCC---ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc---CCCCEEEECCeeccchhhHH
Confidence 479999999999875 128999999999999999999999999999999999999 99997 88887633 22
Q ss_pred HhhcCCCcccCcchh----hhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccC
Q 027060 151 HARRGAPWTFNPLLL----LNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGL 199 (229)
Q Consensus 151 ~~~~~~~~~~~~~~~----~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~ 199 (229)
..+..++++||++.. -||.+.+.|+..... ...+.+++++++.+-.+.+
T Consensus 76 ~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~ 155 (235)
T COG1122 76 ELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAM 155 (235)
T ss_pred HhhcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHc
Confidence 233445556655532 789999998754321 1123455666666666666
Q ss_pred CccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 200 ~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
++++|++|||+..||...++++.+++..
T Consensus 156 ~P~iliLDEPta~LD~~~~~~l~~~l~~ 183 (235)
T COG1122 156 GPEILLLDEPTAGLDPKGRRELLELLKK 183 (235)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 6666777777777776678888877754
No 38
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.89 E-value=9.2e-24 Score=191.13 Aligned_cols=97 Identities=23% Similarity=0.309 Sum_probs=79.0
Q ss_pred CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH-H
Q 027060 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA-H 151 (229)
Q Consensus 74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~-~ 151 (229)
++++|+++|+++.|++.. +|+++||+|.+||+++|+|||||||||||++|+|+++ |++|. .++|+++... .
T Consensus 11 ~~~~L~l~~l~~~~~~~~----~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~---p~~G~I~~~g~~i~~~~~ 83 (375)
T PRK09452 11 LSPLVELRGISKSFDGKE----VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET---PDSGRIMLDGQDITHVPA 83 (375)
T ss_pred CCceEEEEEEEEEECCeE----EEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCH
Confidence 556799999999998754 7999999999999999999999999999999999999 99997 8888764321 1
Q ss_pred hhcCCCcccCcc---hhhhHHHHHHcccc
Q 027060 152 ARRGAPWTFNPL---LLLNCLKNLRNQGS 177 (229)
Q Consensus 152 ~~~~~~~~~~~~---~~~tv~e~l~~~~~ 177 (229)
.++++.+.||.+ +.+|+.+|+.++..
T Consensus 84 ~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~ 112 (375)
T PRK09452 84 ENRHVNTVFQSYALFPHMTVFENVAFGLR 112 (375)
T ss_pred HHCCEEEEecCcccCCCCCHHHHHHHHHh
Confidence 234455555554 34799999998643
No 39
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.89 E-value=1.4e-23 Score=181.10 Aligned_cols=143 Identities=15% Similarity=0.142 Sum_probs=97.9
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhc
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARR 154 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~ 154 (229)
++|+++|+++.|++.. +|+++||+|.+||+++|+||||||||||+++|+|+++ |++|. .++|.++.....
T Consensus 11 ~~l~i~~l~~~~~~~~----il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~-- 81 (257)
T PRK11247 11 TPLLLNAVSKRYGERT----VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET---PSAGELLAGTAPLAEARE-- 81 (257)
T ss_pred CcEEEEEEEEEECCcc----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEHHHhhC--
Confidence 5799999999998754 8999999999999999999999999999999999999 99997 777766543322
Q ss_pred CCCcccCc---chhhhHHHHHHcccccc---------------------CCCCCCCCCCchhhhhhccCCccEEEecCCe
Q 027060 155 GAPWTFNP---LLLLNCLKNLRNQGSVY---------------------APSFDHGVGDPVEDDILVGLQHKVVIVDGNY 210 (229)
Q Consensus 155 ~~~~~~~~---~~~~tv~e~l~~~~~~~---------------------~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~ 210 (229)
.+.+.+|. +..+++.+|+.++.... ...++.++.+++..+.++..+++++++|+|+
T Consensus 82 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt 161 (257)
T PRK11247 82 DTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPL 161 (257)
T ss_pred ceEEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 33333333 23378999987642110 0012233344444444444455555555555
Q ss_pred eeecccCHHHHHHHHhh
Q 027060 211 LFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 211 LlLDEP~~~~l~~~l~~ 227 (229)
..||...+..+.+++..
T Consensus 162 ~~LD~~~~~~l~~~L~~ 178 (257)
T PRK11247 162 GALDALTRIEMQDLIES 178 (257)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 55555567777776643
No 40
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=1.7e-23 Score=169.70 Aligned_cols=135 Identities=16% Similarity=0.194 Sum_probs=106.3
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHhh
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHAR 153 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~~ 153 (229)
|+++|+++.|++.. ..+++++||+|.+|++++|+||||||||||+++|+|+++ |++|. .++|.++.. ...+
T Consensus 1 l~~~~l~~~~~~~~--~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 75 (171)
T cd03228 1 IEFKNVSFSYPGRP--KPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD---PTSGEILIDGVDLRDLDLESLR 75 (171)
T ss_pred CEEEEEEEEcCCCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhhhcCHHHHH
Confidence 47899999998641 127999999999999999999999999999999999999 99997 888875432 1112
Q ss_pred cCCCcccCcch--hhhHHHHHHccccccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 154 RGAPWTFNPLL--LLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 154 ~~~~~~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
..+.+.++... ..++.||+ ++.++.+++..+.++..+++++++|+|+..||...+..+.+++..
T Consensus 76 ~~i~~~~~~~~~~~~t~~e~l----------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~ 141 (171)
T cd03228 76 KNIAYVPQDPFLFSGTIRENI----------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRA 141 (171)
T ss_pred hhEEEEcCCchhccchHHHHh----------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 23333333322 25888887 666778888888888888999999999999999888888888764
No 41
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.89 E-value=1.8e-23 Score=190.53 Aligned_cols=95 Identities=18% Similarity=0.287 Sum_probs=75.7
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---H
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---A 150 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~ 150 (229)
|++|+++||++.|++.. +|+++||+|++||+++|+||||||||||+|+|+|+++ |++|. .++|+++.. .
T Consensus 1 ~~~L~~~nls~~y~~~~----vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~---p~sG~I~l~G~~i~~~~~~ 73 (402)
T PRK09536 1 MPMIDVSDLSVEFGDTT----VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT---PTAGTVLVAGDDVEALSAR 73 (402)
T ss_pred CceEEEeeEEEEECCEE----EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC---CCCcEEEECCEEcCcCCHH
Confidence 35799999999998765 8999999999999999999999999999999999999 99997 888875421 1
Q ss_pred HhhcCCCcccCc---chhhhHHHHHHccc
Q 027060 151 HARRGAPWTFNP---LLLLNCLKNLRNQG 176 (229)
Q Consensus 151 ~~~~~~~~~~~~---~~~~tv~e~l~~~~ 176 (229)
..+..+.+.+|. +..+++.+|+.++.
T Consensus 74 ~~~~~ig~v~q~~~l~~~~tv~e~v~~~~ 102 (402)
T PRK09536 74 AASRRVASVPQDTSLSFEFDVRQVVEMGR 102 (402)
T ss_pred HHhcceEEEccCCCCCCCCCHHHHHHhcc
Confidence 122233333333 34489999998754
No 42
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=1.9e-23 Score=172.54 Aligned_cols=145 Identities=12% Similarity=0.129 Sum_probs=113.2
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHh--cccCCCCce-EecCCCHHHHHhh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKAS-SFDSQDPKEAHAR 153 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll--~~~~p~~G~-~~~g~~~~~~~~~ 153 (229)
.|+++|+++.|++......+|+++||+|.+|++++|+|+||||||||+++|+|+. + |++|+ .++|+++.. ..+
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~~~G~i~~~g~~~~~-~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAG---VITGEILINGRPLDK-NFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CcceEEEECCEehHH-Hhh
Confidence 6899999999975211112799999999999999999999999999999999975 4 78997 888887642 222
Q ss_pred cCCCcccCc---chhhhHHHHHHccccccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 154 RGAPWTFNP---LLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 154 ~~~~~~~~~---~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
..+.+.+|. +..+|+.+|+.+..... .++.++.+++..+.++..+++++++|+|+..||...+..+.+++..
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~ 153 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSALLR--GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKK 153 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHHHh--cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 234344443 33379999998754322 5777888888888888889999999999999999988888888764
No 43
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=1.6e-23 Score=174.72 Aligned_cols=142 Identities=20% Similarity=0.234 Sum_probs=95.7
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhcCC
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARRGA 156 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~~~ 156 (229)
|+++|+++.|++.. +++++||+|.+|++++|+|+||||||||+++|+|+++ |++|. .++|+++... .+..+
T Consensus 1 l~~~~l~~~~~~~~----~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~-~~~~i 72 (210)
T cd03269 1 LEVENVTKRFGRVT----ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL---PDSGEVLFDGKPLDIA-ARNRI 72 (210)
T ss_pred CEEEEEEEEECCEE----EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCCchhHH-HHccE
Confidence 47899999998654 8999999999999999999999999999999999999 99997 8888876432 22334
Q ss_pred CcccCc---chhhhHHHHHHccccccCC---------------------------CCCCCCCCchhhhhhccCCccEEEe
Q 027060 157 PWTFNP---LLLLNCLKNLRNQGSVYAP---------------------------SFDHGVGDPVEDDILVGLQHKVVIV 206 (229)
Q Consensus 157 ~~~~~~---~~~~tv~e~l~~~~~~~~~---------------------------~~~~~~~~~~~~~l~~~~~~rvLi~ 206 (229)
.+.+|. +..+|+.+|+.+....+.. .++.++.+++..+.++..+++++++
T Consensus 73 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lll 152 (210)
T cd03269 73 GYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLIL 152 (210)
T ss_pred EEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 444433 3337889988764321100 1122333333334444444555555
Q ss_pred cCCeeeecccCHHHHHHHHhh
Q 027060 207 DGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 207 d~~~LlLDEP~~~~l~~~l~~ 227 (229)
|+|+..||...++.+.+++..
T Consensus 153 DEP~~~LD~~~~~~~~~~l~~ 173 (210)
T cd03269 153 DEPFSGLDPVNVELLKDVIRE 173 (210)
T ss_pred eCCCcCCCHHHHHHHHHHHHH
Confidence 555555555567777776653
No 44
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.89 E-value=2.2e-23 Score=170.01 Aligned_cols=138 Identities=17% Similarity=0.139 Sum_probs=108.9
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH--Hhhc
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA--HARR 154 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~--~~~~ 154 (229)
|+++|+++.|++.. ..+++++||+|++||+++|+|+||||||||+++|+|+++ |++|. .++|.++... ..+.
T Consensus 1 i~~~~~~~~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 75 (178)
T cd03247 1 LSINNVSFSYPEQE--QQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGVPVSDLEKALSS 75 (178)
T ss_pred CEEEEEEEEeCCCC--ccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCEEHHHHHHHHHh
Confidence 47899999997641 127999999999999999999999999999999999999 99997 8888765321 1223
Q ss_pred CCCcccCcch--hhhHHHHHHccccccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 155 GAPWTFNPLL--LLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 155 ~~~~~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
.+.+.+|.+. ..++.+|+ ...++.++.+++..+.++..+++++++|+|+..||...++.+.+++..
T Consensus 76 ~i~~~~q~~~~~~~tv~~~i-------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~ 143 (178)
T cd03247 76 LISVLNQRPYLFDTTLRNNL-------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE 143 (178)
T ss_pred hEEEEccCCeeecccHHHhh-------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 3333443332 26889988 345667788888888888889999999999999999888888888764
No 45
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=1.1e-23 Score=176.11 Aligned_cols=143 Identities=18% Similarity=0.272 Sum_probs=97.1
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH-HhhcC
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA-HARRG 155 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~-~~~~~ 155 (229)
|+++|+++.|++.. +|+++||+|.+|++++|+|+||||||||+++|+|+++ |++|. .++|+++... ..+..
T Consensus 1 l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~~ 73 (213)
T cd03259 1 LELKGLSKTYGSVR----ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER---PDSGEILIDGRDVTGVPPERRN 73 (213)
T ss_pred CeeeeeEEEeCCee----eecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcCcCchhhcc
Confidence 47899999998654 8999999999999999999999999999999999999 99997 8888764321 11223
Q ss_pred CCcccCcc---hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCCccEEE
Q 027060 156 APWTFNPL---LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQHKVVI 205 (229)
Q Consensus 156 ~~~~~~~~---~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~~rvLi 205 (229)
+.+.+|.. ..+++.+|+.+...... ..++.++.+++..+.++..++++++
T Consensus 74 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~ll 153 (213)
T cd03259 74 IGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLL 153 (213)
T ss_pred EEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 44444443 23688888875422110 0122334444444444555555555
Q ss_pred ecCCeeeecccCHHHHHHHHhh
Q 027060 206 VDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 206 ~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+|+|+..||...+..+.+++..
T Consensus 154 lDEPt~~LD~~~~~~l~~~l~~ 175 (213)
T cd03259 154 LDEPLSALDAKLREELREELKE 175 (213)
T ss_pred EcCCcccCCHHHHHHHHHHHHH
Confidence 5555555555567777777654
No 46
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.2e-23 Score=190.23 Aligned_cols=94 Identities=19% Similarity=0.269 Sum_probs=75.7
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH-Hhh
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA-HAR 153 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~-~~~ 153 (229)
..|+++|+++.|++.. +|+++||+|++|++++|+||||||||||+++|+|+++ |++|. .++|+++... ..+
T Consensus 2 ~~l~i~~l~~~~~~~~----vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~---p~~G~I~~~g~~i~~~~~~~ 74 (369)
T PRK11000 2 ASVTLRNVTKAYGDVV----ISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED---ITSGDLFIGEKRMNDVPPAE 74 (369)
T ss_pred CEEEEEEEEEEeCCeE----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCHhH
Confidence 4699999999998754 8999999999999999999999999999999999999 99997 8888754221 112
Q ss_pred cCCCcccCcc---hhhhHHHHHHccc
Q 027060 154 RGAPWTFNPL---LLLNCLKNLRNQG 176 (229)
Q Consensus 154 ~~~~~~~~~~---~~~tv~e~l~~~~ 176 (229)
..+.+.+|.+ +.+|+.+|+.++.
T Consensus 75 ~~i~~v~Q~~~l~~~~tv~eni~~~~ 100 (369)
T PRK11000 75 RGVGMVFQSYALYPHLSVAENMSFGL 100 (369)
T ss_pred CCEEEEeCCcccCCCCCHHHHHHhHH
Confidence 3444555543 3479999998764
No 47
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.89 E-value=1.8e-23 Score=184.17 Aligned_cols=144 Identities=19% Similarity=0.257 Sum_probs=100.6
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH--HHhh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE--AHAR 153 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~--~~~~ 153 (229)
+++++|++++|++.. +|+|+||+|++||++||+||||||||||+++|+|+++ |++|. .++|.++.. ...+
T Consensus 2 ~l~~~~l~~~~~~~~----~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~---~~~G~i~i~g~~~~~~~~~~~ 74 (301)
T TIGR03522 2 SIRVSSLTKLYGTQN----ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP---PDSGSVQVCGEDVLQNPKEVQ 74 (301)
T ss_pred EEEEEEEEEEECCEE----EEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccChHHHH
Confidence 489999999998754 8999999999999999999999999999999999999 99997 888876422 1122
Q ss_pred cCCCcccCc---chhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCCccE
Q 027060 154 RGAPWTFNP---LLLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQHKV 203 (229)
Q Consensus 154 ~~~~~~~~~---~~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~~rv 203 (229)
..+++.++. +..+++.||+.+....+. ..++.++.+++..+.++..++++
T Consensus 75 ~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 154 (301)
T TIGR03522 75 RNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKV 154 (301)
T ss_pred hceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 334444433 334789999875432211 01223344444444555555556
Q ss_pred EEecCCeeeecccCHHHHHHHHhh
Q 027060 204 VIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 204 Li~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
|++|+|+..||...++.+++++..
T Consensus 155 liLDEPt~gLD~~~~~~l~~~l~~ 178 (301)
T TIGR03522 155 LILDEPTTGLDPNQLVEIRNVIKN 178 (301)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHH
Confidence 666666666666667777777654
No 48
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.89 E-value=1.9e-23 Score=184.13 Aligned_cols=92 Identities=21% Similarity=0.211 Sum_probs=73.0
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH--HHh
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE--AHA 152 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~--~~~ 152 (229)
.+|+++||++.|++.. +|+++||+|++|+++||+||||||||||+++|+|+++ |++|. .++|.++.. ...
T Consensus 3 ~~i~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 75 (303)
T TIGR01288 3 VAIDLVGVSKSYGDKV----VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS---PDRGKITVLGEPVPSRARLA 75 (303)
T ss_pred cEEEEEeEEEEeCCeE----EEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECcccHHHH
Confidence 3699999999998754 8999999999999999999999999999999999999 99997 888875421 112
Q ss_pred hcCCCcccCc---chhhhHHHHHHc
Q 027060 153 RRGAPWTFNP---LLLLNCLKNLRN 174 (229)
Q Consensus 153 ~~~~~~~~~~---~~~~tv~e~l~~ 174 (229)
+..+++.+|. +..+|+.+|+.+
T Consensus 76 ~~~i~~v~q~~~~~~~~tv~e~l~~ 100 (303)
T TIGR01288 76 RVAIGVVPQFDNLDPEFTVRENLLV 100 (303)
T ss_pred hhcEEEEeccccCCcCCcHHHHHHH
Confidence 2334344433 334789999875
No 49
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.89 E-value=2.5e-23 Score=169.04 Aligned_cols=135 Identities=15% Similarity=0.163 Sum_probs=108.1
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHhh
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHAR 153 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~~ 153 (229)
|+++|+++.|++.. ..+++++||+|++||+++|+||||||||||+++|+|+++ |++|. .++|.++.. ...+
T Consensus 1 i~~~~l~~~~~~~~--~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 75 (173)
T cd03246 1 LEVENVSFRYPGAE--PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR---PTSGRVRLDGADISQWDPNELG 75 (173)
T ss_pred CEEEEEEEEcCCCC--CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEEcccCCHHHHH
Confidence 47899999997521 127899999999999999999999999999999999999 99997 888865421 1222
Q ss_pred cCCCcccCcchh--hhHHHHHHccccccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 154 RGAPWTFNPLLL--LNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 154 ~~~~~~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
..+.+.+|.+.+ .++.+|+ ++.++.+++..+.++..+++++++|+|+..||...+..+.+++..
T Consensus 76 ~~i~~~~q~~~~~~~tv~~~l----------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~ 141 (173)
T cd03246 76 DHVGYLPQDDELFSGSIAENI----------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAA 141 (173)
T ss_pred hheEEECCCCccccCcHHHHC----------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHH
Confidence 334444444322 5888887 667888898888889999999999999999999999988888754
No 50
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.89 E-value=4.1e-24 Score=175.14 Aligned_cols=98 Identities=24% Similarity=0.320 Sum_probs=84.3
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH----H
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK----E 149 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~----~ 149 (229)
|.++.++|+.|+|+.+. +++++||+|++||+|||+|||||||||.+.+++|+++ |++|. .++|.++. .
T Consensus 2 ~~~L~a~~l~K~y~kr~----Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~---~d~G~i~ld~~diT~lPm~ 74 (243)
T COG1137 2 MSTLVAENLAKSYKKRK----VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR---PDSGKILLDDEDITKLPMH 74 (243)
T ss_pred CcEEEehhhhHhhCCee----eeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe---cCCceEEECCcccccCChH
Confidence 45799999999999887 8999999999999999999999999999999999999 99997 88998753 3
Q ss_pred HHhhcCCCcccCcch---hhhHHHHHHcccccc
Q 027060 150 AHARRGAPWTFNPLL---LLNCLKNLRNQGSVY 179 (229)
Q Consensus 150 ~~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~ 179 (229)
.+.+.|+++.+|... -+||.+|+.....+.
T Consensus 75 ~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~ 107 (243)
T COG1137 75 KRARLGIGYLPQEASIFRKLTVEDNIMAVLEIR 107 (243)
T ss_pred HHhhcCcccccccchHhhcCcHHHHHHHHHhhh
Confidence 567788877776654 399999998765443
No 51
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=9.5e-24 Score=177.45 Aligned_cols=145 Identities=18% Similarity=0.242 Sum_probs=98.4
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhcCC
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARRGA 156 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~~~ 156 (229)
|+++|+++.|++......+|+++||+|++|++++|+||||||||||+++|+|+++ |++|. .++|.++.... ..+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~--~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER---PTSGEVLVDGEPVTGPG--PDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECcccc--CcE
Confidence 4789999999862111128999999999999999999999999999999999999 99997 88887654222 223
Q ss_pred CcccCcc---hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCCccEEEe
Q 027060 157 PWTFNPL---LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQHKVVIV 206 (229)
Q Consensus 157 ~~~~~~~---~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~~rvLi~ 206 (229)
.+.+|.. ..+|+.+|+.++...+. ..++.++.+++..+.++..+++++++
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllL 155 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLL 155 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 3334332 33688888875422110 01223444455555555555666666
Q ss_pred cCCeeeecccCHHHHHHHHhh
Q 027060 207 DGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 207 d~~~LlLDEP~~~~l~~~l~~ 227 (229)
|+|+..||...+..+.+++..
T Consensus 156 DEPt~~LD~~~~~~~~~~l~~ 176 (220)
T cd03293 156 DEPFSALDALTREQLQEELLD 176 (220)
T ss_pred CCCCCCCCHHHHHHHHHHHHH
Confidence 666666666677777777653
No 52
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.89 E-value=2.4e-23 Score=174.10 Aligned_cols=144 Identities=17% Similarity=0.217 Sum_probs=98.7
Q ss_pred eEEEeeeeEEcC-ccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----
Q 027060 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----- 149 (229)
Q Consensus 77 ~i~~~~ls~~y~-~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----- 149 (229)
+|+++|+++.|+ +.. +|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|. .++|.++..
T Consensus 1 ~l~~~~l~~~~~~~~~----il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~ 73 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVA----ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT---PSRGQVRIAGEDVNRLRGRQ 73 (214)
T ss_pred CEEEEeeeEEeCCCce----eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcccCCHHH
Confidence 488999999994 433 8999999999999999999999999999999999999 99997 888875421
Q ss_pred -HHhhcCCCcccCcch---hhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhcc
Q 027060 150 -AHARRGAPWTFNPLL---LLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVG 198 (229)
Q Consensus 150 -~~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~ 198 (229)
...+..+.+.+|... .+++.+|+.+...... ..++.++.+++..+.++.
T Consensus 74 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~ 153 (214)
T TIGR02673 74 LPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIV 153 (214)
T ss_pred HHHHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh
Confidence 112233444444432 3688898876421100 012233444444445555
Q ss_pred CCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 199 ~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
.+++++++|+|+..||...+..+.+++..
T Consensus 154 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 182 (214)
T TIGR02673 154 NSPPLLLADEPTGNLDPDLSERILDLLKR 182 (214)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 55666666666666666667788777754
No 53
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.89 E-value=2.4e-23 Score=174.56 Aligned_cols=148 Identities=20% Similarity=0.273 Sum_probs=97.8
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH--HHhh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE--AHAR 153 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~--~~~~ 153 (229)
+|+++|+++.|++......+|+++||+|.+|++++|+|+||||||||+++|+|+++ |++|. .++|+++.. ...+
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 77 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE---PDAGFATVDGFDVVKEPAEAR 77 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCCceEEECCEEcccCHHHHH
Confidence 47899999999864111128999999999999999999999999999999999999 99997 888875432 1112
Q ss_pred cCCCcccCcc---hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCCccE
Q 027060 154 RGAPWTFNPL---LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQHKV 203 (229)
Q Consensus 154 ~~~~~~~~~~---~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~~rv 203 (229)
..+.+.+|.. ..+++.+|+.+....+. ..++.++.+++..+.++..++++
T Consensus 78 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~i 157 (218)
T cd03266 78 RRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPV 157 (218)
T ss_pred hhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCE
Confidence 2344444433 33789999875432110 01122333444444444455555
Q ss_pred EEecCCeeeecccCHHHHHHHHhh
Q 027060 204 VIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 204 Li~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
|++|+|+..||......+.+++..
T Consensus 158 lllDEPt~~LD~~~~~~l~~~l~~ 181 (218)
T cd03266 158 LLLDEPTTGLDVMATRALREFIRQ 181 (218)
T ss_pred EEEcCCCcCCCHHHHHHHHHHHHH
Confidence 555555555555567777777653
No 54
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.89 E-value=3.5e-23 Score=172.46 Aligned_cols=143 Identities=20% Similarity=0.249 Sum_probs=94.3
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH-HhhcC
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA-HARRG 155 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~-~~~~~ 155 (229)
|+++|+++.|++.. +|+++||++.+|++++|+|+||||||||+++|+|+++ |++|. .++|.++... ..+..
T Consensus 1 l~~~~l~~~~~~~~----~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (208)
T cd03268 1 LKTNDLTKTYGKKR----VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK---PDSGEITFDGKSYQKNIEALRR 73 (208)
T ss_pred CEEEEEEEEECCeE----eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCCcccchHHHHhh
Confidence 47899999997654 8999999999999999999999999999999999999 99997 8888765321 11223
Q ss_pred CCcccCc---chhhhHHHHHHccccccCC-----------------------CCCCCCCCchhhhhhccCCccEEEecCC
Q 027060 156 APWTFNP---LLLLNCLKNLRNQGSVYAP-----------------------SFDHGVGDPVEDDILVGLQHKVVIVDGN 209 (229)
Q Consensus 156 ~~~~~~~---~~~~tv~e~l~~~~~~~~~-----------------------~~~~~~~~~~~~~l~~~~~~rvLi~d~~ 209 (229)
+.+.+|. ++.+|+.+|+.++...+.. .++.++.+++..+.++..+++++++|+|
T Consensus 74 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 153 (208)
T cd03268 74 IGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEP 153 (208)
T ss_pred EEEecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 3344443 3347999998764321100 0112333333333334444444555555
Q ss_pred eeeecccCHHHHHHHHhh
Q 027060 210 YLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 210 ~LlLDEP~~~~l~~~l~~ 227 (229)
+..||...+..+.+++..
T Consensus 154 t~~LD~~~~~~l~~~l~~ 171 (208)
T cd03268 154 TNGLDPDGIKELRELILS 171 (208)
T ss_pred cccCCHHHHHHHHHHHHH
Confidence 555554457777766653
No 55
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.8e-23 Score=176.83 Aligned_cols=93 Identities=29% Similarity=0.358 Sum_probs=74.1
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----H
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----A 150 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----~ 150 (229)
.+|+++|+++.|++.. +|+++||+|++|++++|+|+||||||||+++|+|+++ |++|. .++|.++.. .
T Consensus 2 ~~l~~~~l~~~~~~~~----~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~ 74 (241)
T PRK10895 2 ATLTAKNLAKAYKGRR----VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP---RDAGNIIIDDEDISLLPLHA 74 (241)
T ss_pred ceEEEeCcEEEeCCEE----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHH
Confidence 4799999999998654 8999999999999999999999999999999999999 99997 888865421 1
Q ss_pred HhhcCCCcccCcc---hhhhHHHHHHcc
Q 027060 151 HARRGAPWTFNPL---LLLNCLKNLRNQ 175 (229)
Q Consensus 151 ~~~~~~~~~~~~~---~~~tv~e~l~~~ 175 (229)
..+.++.+.+|.. ..+++.+|+.+.
T Consensus 75 ~~~~~i~~~~q~~~~~~~~tv~enl~~~ 102 (241)
T PRK10895 75 RARRGIGYLPQEASIFRRLSVYDNLMAV 102 (241)
T ss_pred HHHhCeEEeccCCcccccCcHHHHHhhh
Confidence 1233444444443 236899998764
No 56
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=1.4e-23 Score=180.78 Aligned_cols=144 Identities=15% Similarity=0.171 Sum_probs=95.5
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhcC
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARRG 155 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~~ 155 (229)
+|+++|+++.|++.. +|+|+||+|++|++++|+||||||||||+++|+|+++ |++|. .++|.++.......+
T Consensus 1 ml~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~ 73 (255)
T PRK11248 1 MLQISHLYADYGGKP----ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP---YQHGSITLDGKPVEGPGAERG 73 (255)
T ss_pred CEEEEEEEEEeCCee----eEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCCcEE
Confidence 488999999998654 8999999999999999999999999999999999999 99997 888876532111223
Q ss_pred C-CcccCcchhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCCccEEEec
Q 027060 156 A-PWTFNPLLLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQHKVVIVD 207 (229)
Q Consensus 156 ~-~~~~~~~~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~~rvLi~d 207 (229)
+ ++.+..+...|+.+|+.++..... ..++.++.+++..+.++..++++|++|
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLD 153 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLD 153 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 2 222222333688888876421110 011223334444444444455555555
Q ss_pred CCeeeecccCHHHHHHHHhh
Q 027060 208 GNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 208 ~~~LlLDEP~~~~l~~~l~~ 227 (229)
+|+..||...+..+.+++..
T Consensus 154 EPt~~LD~~~~~~l~~~L~~ 173 (255)
T PRK11248 154 EPFGALDAFTREQMQTLLLK 173 (255)
T ss_pred CCCccCCHHHHHHHHHHHHH
Confidence 55555555567777776653
No 57
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.89 E-value=3e-23 Score=177.50 Aligned_cols=145 Identities=15% Similarity=0.232 Sum_probs=98.8
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----- 149 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----- 149 (229)
++|+++||++.|++.. +|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|. .++|.++..
T Consensus 2 ~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~ 74 (250)
T PRK11264 2 SAIEVKNLVKKFHGQT----VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ---PEAGTIRVGDITIDTARSLS 74 (250)
T ss_pred CcEEEeceEEEECCee----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEcccccccc
Confidence 4799999999998654 8999999999999999999999999999999999999 99997 788765321
Q ss_pred ------HHhhcCCCcccCcc---hhhhHHHHHHccccc-cC---------------------------CCCCCCCCCchh
Q 027060 150 ------AHARRGAPWTFNPL---LLLNCLKNLRNQGSV-YA---------------------------PSFDHGVGDPVE 192 (229)
Q Consensus 150 ------~~~~~~~~~~~~~~---~~~tv~e~l~~~~~~-~~---------------------------~~~~~~~~~~~~ 192 (229)
...+..+.+.+|.. +..|+.+|+.++... .. ..++.++.+++.
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~ 154 (250)
T PRK11264 75 QQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVA 154 (250)
T ss_pred chhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHH
Confidence 11223344444443 236888888653110 00 012223344444
Q ss_pred hhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 193 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 193 ~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
.+.++..++++|++|+|+..||...+..+.+++..
T Consensus 155 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 189 (250)
T PRK11264 155 IARALAMRPEVILFDEPTSALDPELVGEVLNTIRQ 189 (250)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 44445555555666666666666567777777654
No 58
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=2.7e-23 Score=174.74 Aligned_cols=91 Identities=24% Similarity=0.341 Sum_probs=70.8
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH--HHhhc
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE--AHARR 154 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~--~~~~~ 154 (229)
|+++|+++.|++.. +|+++||+|.+||+++|+|+||||||||+++|+|+++ |++|. .++|.++.. ...+.
T Consensus 1 i~~~~~~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (220)
T cd03265 1 IEVENLVKKYGDFE----AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK---PTSGRATVAGHDVVREPREVRR 73 (220)
T ss_pred CEEEEEEEEECCEE----eeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEecCcChHHHhh
Confidence 57899999998754 8999999999999999999999999999999999999 99997 788865321 11122
Q ss_pred CCCcccCcc---hhhhHHHHHHcc
Q 027060 155 GAPWTFNPL---LLLNCLKNLRNQ 175 (229)
Q Consensus 155 ~~~~~~~~~---~~~tv~e~l~~~ 175 (229)
.+.+.+|.. ..+++.+|+.+.
T Consensus 74 ~i~~~~q~~~~~~~~tv~~~l~~~ 97 (220)
T cd03265 74 RIGIVFQDLSVDDELTGWENLYIH 97 (220)
T ss_pred cEEEecCCccccccCcHHHHHHHH
Confidence 333344433 337889988764
No 59
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=2.5e-23 Score=176.27 Aligned_cols=148 Identities=20% Similarity=0.238 Sum_probs=97.1
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----H
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-----A 150 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-----~ 150 (229)
+|+++|+++.|++......+|+++||+|.+||+++|+||||||||||+++|+|+++ |++|. .++|.++.. .
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 77 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER---PTSGSVLVDGTDLTLLSGKEL 77 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcccCCHHHH
Confidence 48899999999864100128999999999999999999999999999999999999 99997 888876421 1
Q ss_pred -HhhcCCCcccCcc---hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccC
Q 027060 151 -HARRGAPWTFNPL---LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGL 199 (229)
Q Consensus 151 -~~~~~~~~~~~~~---~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~ 199 (229)
..+..+.+.+|.. ..+|+.+|+.+...... ..++.++.+++..+.++..
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 157 (233)
T cd03258 78 RKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALAN 157 (233)
T ss_pred HHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhc
Confidence 1123344444443 23789999876421110 0112233344444444444
Q ss_pred CccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 200 ~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+++++++|+|+..||...+..+.+++..
T Consensus 158 ~p~lllLDEP~~~LD~~~~~~l~~~l~~ 185 (233)
T cd03258 158 NPKVLLCDEATSALDPETTQSILALLRD 185 (233)
T ss_pred CCCEEEecCCCCcCCHHHHHHHHHHHHH
Confidence 5555555555555555567777776653
No 60
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.89 E-value=3e-23 Score=174.19 Aligned_cols=143 Identities=19% Similarity=0.219 Sum_probs=96.4
Q ss_pred EEEeeeeEEcCc--cccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH--HHh
Q 027060 78 VEARCMDEVYDA--LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE--AHA 152 (229)
Q Consensus 78 i~~~~ls~~y~~--~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~--~~~ 152 (229)
|+++||++.|++ .. +|+++||+|++||+++|+||||||||||+++|+|+++ |++|. .++|.++.. ...
T Consensus 1 l~~~~l~~~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 73 (220)
T cd03263 1 LQIRNLTKTYKKGTKP----AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR---PTSGTAYINGYSIRTDRKAA 73 (220)
T ss_pred CEEEeeEEEeCCCCce----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccchHHH
Confidence 578999999976 33 8999999999999999999999999999999999999 99997 888876421 111
Q ss_pred hcCCCcccCc---chhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCCcc
Q 027060 153 RRGAPWTFNP---LLLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQHK 202 (229)
Q Consensus 153 ~~~~~~~~~~---~~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~~r 202 (229)
+..+.+.+|. +...|+.+|+.+....+. ..++.++.+++..+.++..+++
T Consensus 74 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 153 (220)
T cd03263 74 RQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPS 153 (220)
T ss_pred hhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCC
Confidence 2223333333 234688898876422110 0112233444444444455555
Q ss_pred EEEecCCeeeecccCHHHHHHHHhh
Q 027060 203 VVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 203 vLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
++++|+|+..||...++.+.+++..
T Consensus 154 llllDEP~~~LD~~~~~~l~~~l~~ 178 (220)
T cd03263 154 VLLLDEPTSGLDPASRRAIWDLILE 178 (220)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHH
Confidence 5666666666665567777777654
No 61
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.89 E-value=3.1e-23 Score=175.41 Aligned_cols=143 Identities=22% Similarity=0.273 Sum_probs=94.9
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----HHh
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----AHA 152 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----~~~ 152 (229)
|+++|+++.|++.. +|+++||+|.+|++++|+|+||||||||+++|+|+++ |++|. .++|.++.. ...
T Consensus 1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~ 73 (232)
T cd03218 1 LRAENLSKRYGKRK----VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK---PDSGKILLDGQDITKLPMHKRA 73 (232)
T ss_pred CeEEEEEEEeCCEE----eeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccCCHhHHH
Confidence 47899999998654 8999999999999999999999999999999999999 99997 888875421 112
Q ss_pred hcCCCcccCcc---hhhhHHHHHHccccccCC---------------------------CCCCCCCCchhhhhhccCCcc
Q 027060 153 RRGAPWTFNPL---LLLNCLKNLRNQGSVYAP---------------------------SFDHGVGDPVEDDILVGLQHK 202 (229)
Q Consensus 153 ~~~~~~~~~~~---~~~tv~e~l~~~~~~~~~---------------------------~~~~~~~~~~~~~l~~~~~~r 202 (229)
+..+.+.+|.. ..+|+.+|+.+....... .++.++.+++..+.++..+++
T Consensus 74 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 153 (232)
T cd03218 74 RLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPK 153 (232)
T ss_pred hccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 23344444433 336899998764321110 011233333333444444455
Q ss_pred EEEecCCeeeecccCHHHHHHHHhh
Q 027060 203 VVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 203 vLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+|++|+|+..||....+.+.+++..
T Consensus 154 llllDEPt~~LD~~~~~~~~~~l~~ 178 (232)
T cd03218 154 FLLLDEPFAGVDPIAVQDIQKIIKI 178 (232)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHH
Confidence 5555555555555567777776653
No 62
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=2.4e-23 Score=188.59 Aligned_cols=97 Identities=20% Similarity=0.258 Sum_probs=78.7
Q ss_pred CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-HH
Q 027060 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-AH 151 (229)
Q Consensus 74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-~~ 151 (229)
+.++|+++|+++.|++.. +|+++||+|++||+++|+||||||||||||+|+|+++ |++|. .++|+++.. ..
T Consensus 16 ~~~~l~l~~v~~~~~~~~----~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~i~g~~i~~~~~ 88 (377)
T PRK11607 16 LTPLLEIRNLTKSFDGQH----AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ---PTAGQIMLDGVDLSHVPP 88 (377)
T ss_pred CCceEEEEeEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCH
Confidence 456899999999998754 7999999999999999999999999999999999999 99997 888876422 12
Q ss_pred hhcCCCcccCcc---hhhhHHHHHHcccc
Q 027060 152 ARRGAPWTFNPL---LLLNCLKNLRNQGS 177 (229)
Q Consensus 152 ~~~~~~~~~~~~---~~~tv~e~l~~~~~ 177 (229)
.++.+++.||.+ +.+|+.||+.++..
T Consensus 89 ~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~ 117 (377)
T PRK11607 89 YQRPINMMFQSYALFPHMTVEQNIAFGLK 117 (377)
T ss_pred HHCCEEEEeCCCccCCCCCHHHHHHHHHH
Confidence 234455555554 34899999998643
No 63
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.89 E-value=4e-23 Score=173.23 Aligned_cols=95 Identities=18% Similarity=0.182 Sum_probs=74.1
Q ss_pred CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHh
Q 027060 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHA 152 (229)
Q Consensus 74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~ 152 (229)
..++|+++|+++.|++.. +++++||+|.+||+++|+|+||||||||+++|+|+++ |++|. .++|+++.....
T Consensus 8 ~~~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~i~~~~~ 80 (214)
T PRK13543 8 APPLLAAHALAFSRNEEP----VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH---VESGQIQIDGKTATRGDR 80 (214)
T ss_pred CcceEEEeeEEEecCCce----eeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCCeeEEECCEEccchhh
Confidence 446899999999998754 8999999999999999999999999999999999999 99997 888876532212
Q ss_pred hcCCCcccCcc---hhhhHHHHHHcc
Q 027060 153 RRGAPWTFNPL---LLLNCLKNLRNQ 175 (229)
Q Consensus 153 ~~~~~~~~~~~---~~~tv~e~l~~~ 175 (229)
+..+.+.++.+ ..+++.+|+.+.
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~ 106 (214)
T PRK13543 81 SRFMAYLGHLPGLKADLSTLENLHFL 106 (214)
T ss_pred hhceEEeecCcccccCCcHHHHHHHH
Confidence 22333333332 236888888653
No 64
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.89 E-value=2e-23 Score=188.14 Aligned_cols=144 Identities=15% Similarity=0.234 Sum_probs=101.7
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCC--ce-EecCCCHHHH-Hh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK--AS-SFDSQDPKEA-HA 152 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~--G~-~~~g~~~~~~-~~ 152 (229)
.|+++||++.|++.. +|+++||+|.+||+++|+|||||||||||++|+|+++ |++ |. .++|+++... ..
T Consensus 5 ~l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~~~G~i~~~g~~~~~~~~~ 77 (362)
T TIGR03258 5 GIRIDHLRVAYGANT----VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK---AAGLTGRIAIADRDLTHAPPH 77 (362)
T ss_pred EEEEEEEEEEECCeE----EEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCCEEEEECCEECCCCCHH
Confidence 389999999998754 8999999999999999999999999999999999999 999 97 8888764221 12
Q ss_pred hcCCCcccCcch---hhhHHHHHHccccccCC---------------------------CCCCCCCCchhhhhhccCCcc
Q 027060 153 RRGAPWTFNPLL---LLNCLKNLRNQGSVYAP---------------------------SFDHGVGDPVEDDILVGLQHK 202 (229)
Q Consensus 153 ~~~~~~~~~~~~---~~tv~e~l~~~~~~~~~---------------------------~~~~~~~~~~~~~l~~~~~~r 202 (229)
++.+.+.||.+. .+|+.+|+.++...... .++.++.+++..+.++..+++
T Consensus 78 ~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~ 157 (362)
T TIGR03258 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPD 157 (362)
T ss_pred HCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 344555555543 47999999876432110 112233444444444555555
Q ss_pred EEEecCCeeeecccCHHHHHHHHhh
Q 027060 203 VVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 203 vLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+|++|+|+..||...+.++++.+..
T Consensus 158 llLLDEP~s~LD~~~r~~l~~~l~~ 182 (362)
T TIGR03258 158 VLLLDEPLSALDANIRANMREEIAA 182 (362)
T ss_pred EEEEcCccccCCHHHHHHHHHHHHH
Confidence 5555555555555567777777653
No 65
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.88 E-value=4.2e-23 Score=174.29 Aligned_cols=150 Identities=17% Similarity=0.169 Sum_probs=97.5
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---- 149 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---- 149 (229)
.++|+++|+++.|++......+|+++||+|.+||+++|+|+||||||||+++|+|+++ |++|. .++|+++..
T Consensus 4 ~~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~~~~~~~~ 80 (228)
T PRK10584 4 ENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD---GSSGEVSLVGQPLHQMDEE 80 (228)
T ss_pred CceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCeeEEECCEEcccCCHH
Confidence 3579999999999753111127899999999999999999999999999999999999 99997 788865321
Q ss_pred -H--HhhcCCCcccCcch---hhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhh
Q 027060 150 -A--HARRGAPWTFNPLL---LLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDIL 196 (229)
Q Consensus 150 -~--~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~ 196 (229)
. .++..+.+.+|.+. .+++.+|+.+...... ..++.++.+++..+.+
T Consensus 81 ~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~a 160 (228)
T PRK10584 81 ARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARA 160 (228)
T ss_pred HHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHH
Confidence 1 11234444444432 2689999875321110 0112233344444444
Q ss_pred ccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 197 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 197 ~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+..++++|++|+|+..||...+..+.+++..
T Consensus 161 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 191 (228)
T PRK10584 161 FNGRPDVLFADEPTGNLDRQTGDKIADLLFS 191 (228)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 4444555555555555555557777776643
No 66
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=3.4e-23 Score=172.41 Aligned_cols=151 Identities=14% Similarity=0.082 Sum_probs=111.3
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH--Hhh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA--HAR 153 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~--~~~ 153 (229)
.+.++||+|.|+.......+|+++||+|++|++++|+|+||||||||+++|+|+++...|++|. .++|.++... ..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 5789999999976422334899999999999999999999999999999999998611246896 8888764321 222
Q ss_pred cCCCcccCc---chhhhHHHHHHccccc----cCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHh
Q 027060 154 RGAPWTFNP---LLLLNCLKNLRNQGSV----YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 226 (229)
Q Consensus 154 ~~~~~~~~~---~~~~tv~e~l~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~ 226 (229)
..+.+.+|. +..+|+.+|+.+.... ....++.++.+++..+.++..+++++++|+|+..||...++.+.+++.
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~ 162 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIR 162 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHH
Confidence 334444433 2337999999875432 112345667777777777777888888888888888888888888776
Q ss_pred h
Q 027060 227 E 227 (229)
Q Consensus 227 ~ 227 (229)
.
T Consensus 163 ~ 163 (202)
T cd03233 163 T 163 (202)
T ss_pred H
Confidence 4
No 67
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=2.6e-23 Score=176.35 Aligned_cols=149 Identities=13% Similarity=0.119 Sum_probs=97.8
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----- 149 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----- 149 (229)
++|+++||++.|++......+|+++||+|++||+++|+||||||||||+++|+|+++ |++|. .++|+++..
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~i~~~~~~~ 80 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT---PTSGDVIFNGQPMSKLSSAA 80 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCCHHH
Confidence 479999999999752111237999999999999999999999999999999999999 99997 888875421
Q ss_pred H--HhhcCCCcccCcch---hhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhc
Q 027060 150 A--HARRGAPWTFNPLL---LLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILV 197 (229)
Q Consensus 150 ~--~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~ 197 (229)
. .++..+.+.+|... .+|+.+|+.+...... ..++.++.+++..+.++
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al 160 (233)
T PRK11629 81 KAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARAL 160 (233)
T ss_pred HHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 1 11234444454432 3689999876321100 01112333344444444
Q ss_pred cCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 198 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 198 ~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
..+++++++|+|+..||...+..+.+++..
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 190 (233)
T PRK11629 161 VNNPRLVLADEPTGNLDARNADSIFQLLGE 190 (233)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 445555555555555555567777776653
No 68
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.88 E-value=4e-23 Score=172.48 Aligned_cols=143 Identities=19% Similarity=0.253 Sum_probs=97.1
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH-----HHH
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK-----EAH 151 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~-----~~~ 151 (229)
|+++|+++.|++.. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++|. .++|.++. ...
T Consensus 1 l~~~~l~~~~~~~~----~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (213)
T cd03262 1 IEIKNLHKSFGDFH----VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE---PDSGTIIIDGLKLTDDKKNINE 73 (213)
T ss_pred CEEEEEEEEECCeE----eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCccchhHHH
Confidence 47899999998754 8999999999999999999999999999999999999 99997 88886541 112
Q ss_pred hhcCCCcccCcch---hhhHHHHHHcccc-ccC---------------------------CCCCCCCCCchhhhhhccCC
Q 027060 152 ARRGAPWTFNPLL---LLNCLKNLRNQGS-VYA---------------------------PSFDHGVGDPVEDDILVGLQ 200 (229)
Q Consensus 152 ~~~~~~~~~~~~~---~~tv~e~l~~~~~-~~~---------------------------~~~~~~~~~~~~~~l~~~~~ 200 (229)
.+..+.+.+|... .+++.+|+.++.. ... ..++.++.+++..+.++..+
T Consensus 74 ~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 153 (213)
T cd03262 74 LRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMN 153 (213)
T ss_pred HHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcC
Confidence 2334555554432 3688898876421 000 01222334444444444455
Q ss_pred ccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 201 HKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 201 ~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
++++++|+|+..||...++.+.+++..
T Consensus 154 p~llllDEP~~~LD~~~~~~l~~~l~~ 180 (213)
T cd03262 154 PKVMLFDEPTSALDPELVGEVLDVMKD 180 (213)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 555555555555555567777777654
No 69
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=2.7e-23 Score=186.22 Aligned_cols=148 Identities=19% Similarity=0.247 Sum_probs=99.7
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----H
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-----A 150 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-----~ 150 (229)
||+++||+++|+.......+|+|+||+|++||++||+||||||||||+|+|+|+++ |++|. .++|.++.. .
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~---p~~G~I~~~g~~i~~~~~~~~ 77 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER---PTSGRVLVDGQDLTALSEKEL 77 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCcCCHHHH
Confidence 48999999999721111238999999999999999999999999999999999999 99997 888875421 1
Q ss_pred -HhhcCCCcccCcc---hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccC
Q 027060 151 -HARRGAPWTFNPL---LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGL 199 (229)
Q Consensus 151 -~~~~~~~~~~~~~---~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~ 199 (229)
..+..+.+.+|.+ ..+|+.+|+.++..... ..++.++.+++..+.++..
T Consensus 78 ~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~ 157 (343)
T PRK11153 78 RKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALAS 157 (343)
T ss_pred HHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHc
Confidence 1233444555443 23789999986532110 0122334444444444555
Q ss_pred CccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 200 ~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
++++|++|+|+..||...+..+.+++..
T Consensus 158 ~p~iLlLDEPts~LD~~~~~~l~~~L~~ 185 (343)
T PRK11153 158 NPKVLLCDEATSALDPATTRSILELLKD 185 (343)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 5555555666666665567777777654
No 70
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.88 E-value=5.7e-23 Score=173.39 Aligned_cols=91 Identities=23% Similarity=0.295 Sum_probs=72.5
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHh-----cccCCCCce-EecCCCHHH--
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI-----NKIWPQKAS-SFDSQDPKE-- 149 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll-----~~~~p~~G~-~~~g~~~~~-- 149 (229)
|+++||++.|++.. +|+++||+|.+||+++|+|+||||||||+++|+|++ + |++|. .++|+++..
T Consensus 1 i~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~---~~~G~i~~~g~~~~~~~ 73 (227)
T cd03260 1 IELRDLNVYYGDKH----ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA---PDEGEVLLDGKDIYDLD 73 (227)
T ss_pred CEEEEEEEEcCCce----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC---CCCeEEEECCEEhhhcc
Confidence 57899999998754 899999999999999999999999999999999999 8 99997 888876532
Q ss_pred ---HHhhcCCCcccCcch--hhhHHHHHHcc
Q 027060 150 ---AHARRGAPWTFNPLL--LLNCLKNLRNQ 175 (229)
Q Consensus 150 ---~~~~~~~~~~~~~~~--~~tv~e~l~~~ 175 (229)
...+..+.+.+|... .+|+.+|+.++
T Consensus 74 ~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~ 104 (227)
T cd03260 74 VDVLELRRRVGMVFQKPNPFPGSIYDNVAYG 104 (227)
T ss_pred hHHHHHHhhEEEEecCchhccccHHHHHHhH
Confidence 112233444444433 37899998764
No 71
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.88 E-value=4.9e-23 Score=173.00 Aligned_cols=143 Identities=20% Similarity=0.211 Sum_probs=97.1
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----HHh
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----AHA 152 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----~~~ 152 (229)
|+++||++.|++.. +++++||+|.+|++++|+||||||||||+++|+|+++ |++|. .++|.++.. ...
T Consensus 1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (222)
T cd03224 1 LEVENLNAGYGKSQ----ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP---PRSGSIRFDGRDITGLPPHERA 73 (222)
T ss_pred CEEeeEEeecCCee----EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcCCCCHHHHH
Confidence 57899999998654 8999999999999999999999999999999999999 99997 888865321 112
Q ss_pred hcCCCcccCcc---hhhhHHHHHHccccccCC--------------------------CCCCCCCCchhhhhhccCCccE
Q 027060 153 RRGAPWTFNPL---LLLNCLKNLRNQGSVYAP--------------------------SFDHGVGDPVEDDILVGLQHKV 203 (229)
Q Consensus 153 ~~~~~~~~~~~---~~~tv~e~l~~~~~~~~~--------------------------~~~~~~~~~~~~~l~~~~~~rv 203 (229)
+..+.+.+|.. ..+|+.+|+.+....... .++.++.+++..+.++..++++
T Consensus 74 ~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 153 (222)
T cd03224 74 RAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKL 153 (222)
T ss_pred hcCeEEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 23344444443 336899998764322100 1122333444444444445555
Q ss_pred EEecCCeeeecccCHHHHHHHHhh
Q 027060 204 VIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 204 Li~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+++|+|+..||...+..+.+++..
T Consensus 154 lllDEPt~~LD~~~~~~l~~~l~~ 177 (222)
T cd03224 154 LLLDEPSEGLAPKIVEEIFEAIRE 177 (222)
T ss_pred EEECCCcccCCHHHHHHHHHHHHH
Confidence 555666666665567777777654
No 72
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.88 E-value=6.9e-23 Score=170.05 Aligned_cols=144 Identities=18% Similarity=0.155 Sum_probs=96.3
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH--HHhh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE--AHAR 153 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~--~~~~ 153 (229)
+|+++|+++.|++.. +|+++||+|.+||+++|+|+||||||||+++|+|+++ |++|. .++|+++.. ...+
T Consensus 1 ml~~~~l~~~~~~~~----il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~ 73 (200)
T PRK13540 1 MLDVIELDFDYHDQP----LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN---PEKGEILFERQSIKKDLCTYQ 73 (200)
T ss_pred CEEEEEEEEEeCCee----EEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeeEEECCCccccCHHHHH
Confidence 488999999998754 8999999999999999999999999999999999999 99997 888876431 1122
Q ss_pred cCCCcccCc---chhhhHHHHHHccccccC----------------------CCCCCCCCCchhhhhhccCCccEEEecC
Q 027060 154 RGAPWTFNP---LLLLNCLKNLRNQGSVYA----------------------PSFDHGVGDPVEDDILVGLQHKVVIVDG 208 (229)
Q Consensus 154 ~~~~~~~~~---~~~~tv~e~l~~~~~~~~----------------------~~~~~~~~~~~~~~l~~~~~~rvLi~d~ 208 (229)
..+.+.++. ++..|+.+|+.++..... ..++.++.+++..+.++..+++++++|+
T Consensus 74 ~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDE 153 (200)
T PRK13540 74 KQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDE 153 (200)
T ss_pred hheEEeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 233333332 234789999876421100 0112233334444444444455555555
Q ss_pred CeeeecccCHHHHHHHHhh
Q 027060 209 NYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 209 ~~LlLDEP~~~~l~~~l~~ 227 (229)
|+..||......+.+++..
T Consensus 154 P~~~LD~~~~~~l~~~l~~ 172 (200)
T PRK13540 154 PLVALDELSLLTIITKIQE 172 (200)
T ss_pred CCcccCHHHHHHHHHHHHH
Confidence 5555555567777776653
No 73
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.88 E-value=5e-23 Score=171.37 Aligned_cols=144 Identities=19% Similarity=0.188 Sum_probs=94.9
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----HH
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----AH 151 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----~~ 151 (229)
+|+++|+++.|++.. +|+++||+|++||+++|+|+||||||||+++|+|+++ |++|. .++|.++.. ..
T Consensus 1 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~v~~~g~~~~~~~~~~~ 73 (204)
T PRK13538 1 MLEARNLACERDERI----LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR---PDAGEVLWQGEPIRRQRDEYH 73 (204)
T ss_pred CeEEEEEEEEECCEE----EEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccchHHhh
Confidence 488999999998754 7999999999999999999999999999999999999 99997 888865421 11
Q ss_pred hhcCC-CcccCcchhhhHHHHHHccccccC------------------------CCCCCCCCCchhhhhhccCCccEEEe
Q 027060 152 ARRGA-PWTFNPLLLLNCLKNLRNQGSVYA------------------------PSFDHGVGDPVEDDILVGLQHKVVIV 206 (229)
Q Consensus 152 ~~~~~-~~~~~~~~~~tv~e~l~~~~~~~~------------------------~~~~~~~~~~~~~~l~~~~~~rvLi~ 206 (229)
...++ ++.+.....+|+.+|+.+....+. ..++.++.+++..+.++...++++++
T Consensus 74 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll 153 (204)
T PRK13538 74 QDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWIL 153 (204)
T ss_pred hheEEeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 22222 222223333789999876532211 01112233333333444444455555
Q ss_pred cCCeeeecccCHHHHHHHHhh
Q 027060 207 DGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 207 d~~~LlLDEP~~~~l~~~l~~ 227 (229)
|+|+..||...+..+.+++..
T Consensus 154 DEPt~~LD~~~~~~l~~~l~~ 174 (204)
T PRK13538 154 DEPFTAIDKQGVARLEALLAQ 174 (204)
T ss_pred eCCCccCCHHHHHHHHHHHHH
Confidence 555555555567777776653
No 74
>PRK10908 cell division protein FtsE; Provisional
Probab=99.88 E-value=4.7e-23 Score=173.47 Aligned_cols=144 Identities=18% Similarity=0.190 Sum_probs=95.1
Q ss_pred eEEEeeeeEEc-CccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----
Q 027060 77 VVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----- 149 (229)
Q Consensus 77 ~i~~~~ls~~y-~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----- 149 (229)
+|+++|+++.| ++.. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++|. .++|.++..
T Consensus 1 ~l~~~~l~~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~ 73 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQ----ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER---PSAGKIWFSGHDITRLKNRE 73 (222)
T ss_pred CEEEEeeEEEecCCCe----EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccCChhH
Confidence 38899999999 5433 7999999999999999999999999999999999999 99997 888875421
Q ss_pred H-HhhcCCCcccCcc---hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhcc
Q 027060 150 A-HARRGAPWTFNPL---LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVG 198 (229)
Q Consensus 150 ~-~~~~~~~~~~~~~---~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~ 198 (229)
. ..+..+.+.+|.+ ...++.+|+.+...... ..++.++.+++..+.++.
T Consensus 74 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~ 153 (222)
T PRK10908 74 VPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVV 153 (222)
T ss_pred HHHHHhheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHH
Confidence 1 1223444444443 33789999876421110 011122333333344444
Q ss_pred CCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 199 ~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
.++++|++|+|+..||...++.+.+++..
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~ 182 (222)
T PRK10908 154 NKPAVLLADEPTGNLDDALSEGILRLFEE 182 (222)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence 44555555555555555556777776653
No 75
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.88 E-value=3.9e-23 Score=172.77 Aligned_cols=140 Identities=14% Similarity=0.143 Sum_probs=96.3
Q ss_pred EEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhcCCC
Q 027060 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARRGAP 157 (229)
Q Consensus 79 ~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~~~~ 157 (229)
+++||++.|++.. +|+++||+|.+||+++|+||||||||||+++|+|+++ |++|. .++|+++...+. .+.
T Consensus 1 ~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~--~i~ 71 (213)
T cd03235 1 EVEDLTVSYGGHP----VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK---PTSGSIRVFGKPLEKERK--RIG 71 (213)
T ss_pred CcccceeEECCEE----eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCccHHHHHh--heE
Confidence 3689999998654 7999999999999999999999999999999999999 99997 888887653222 343
Q ss_pred cccCcch-----hhhHHHHHHccccccC-------------------------------CCCCCCCCCchhhhhhccCCc
Q 027060 158 WTFNPLL-----LLNCLKNLRNQGSVYA-------------------------------PSFDHGVGDPVEDDILVGLQH 201 (229)
Q Consensus 158 ~~~~~~~-----~~tv~e~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~l~~~~~~ 201 (229)
+.+|.+. ..|+.+|+.+...... ..++.++.+++..+.++..++
T Consensus 72 ~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p 151 (213)
T cd03235 72 YVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDP 151 (213)
T ss_pred EeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 4443322 2689999876432110 011223334444444444555
Q ss_pred cEEEecCCeeeecccCHHHHHHHHhh
Q 027060 202 KVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 202 rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+++++|+|+..||...+..+.+++..
T Consensus 152 ~llllDEPt~~LD~~~~~~l~~~l~~ 177 (213)
T cd03235 152 DLLLLDEPFAGVDPKTQEDIYELLRE 177 (213)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 55666666666666567777777654
No 76
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.88 E-value=5.9e-23 Score=171.39 Aligned_cols=144 Identities=17% Similarity=0.174 Sum_probs=94.2
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhcC
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARRG 155 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~~ 155 (229)
+|+++|+++.|++.. +|+++||+|++||+++|+|+||||||||+++|+|+++ |++|. .++|.+......+..
T Consensus 2 ~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 74 (207)
T PRK13539 2 MLEGEDLACVRGGRV----LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP---PAAGTIKLDGGDIDDPDVAEA 74 (207)
T ss_pred EEEEEeEEEEECCeE----EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEeCcchhhHhh
Confidence 599999999998654 8999999999999999999999999999999999999 99997 888875321112222
Q ss_pred CCccc---CcchhhhHHHHHHccccccC-----------------------CCCCCCCCCchhhhhhccCCccEEEecCC
Q 027060 156 APWTF---NPLLLLNCLKNLRNQGSVYA-----------------------PSFDHGVGDPVEDDILVGLQHKVVIVDGN 209 (229)
Q Consensus 156 ~~~~~---~~~~~~tv~e~l~~~~~~~~-----------------------~~~~~~~~~~~~~~l~~~~~~rvLi~d~~ 209 (229)
+.+.+ .....+++.+|+.+...... ..++.++.+++..+.++..+++++++|+|
T Consensus 75 ~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 154 (207)
T PRK13539 75 CHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEP 154 (207)
T ss_pred cEEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 32332 22233788898865322110 01122333333333334444444444444
Q ss_pred eeeecccCHHHHHHHHhh
Q 027060 210 YLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 210 ~LlLDEP~~~~l~~~l~~ 227 (229)
+..||...+..+.+++.+
T Consensus 155 t~~LD~~~~~~l~~~l~~ 172 (207)
T PRK13539 155 TAALDAAAVALFAELIRA 172 (207)
T ss_pred cccCCHHHHHHHHHHHHH
Confidence 444444457777777754
No 77
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.88 E-value=7.2e-23 Score=165.52 Aligned_cols=134 Identities=15% Similarity=0.073 Sum_probs=106.4
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhcCC
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARRGA 156 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~~~ 156 (229)
|+++|+++.|++.. .+|+++||+|.+|++++|+|+||||||||+++|+|+++ |++|. .++|. ...++
T Consensus 1 i~~~~~~~~~~~~~---~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~------~~i~~ 68 (166)
T cd03223 1 IELENLSLATPDGR---VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP---WGSGRIGMPEG------EDLLF 68 (166)
T ss_pred CEEEEEEEEcCCCC---eeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCC------ceEEE
Confidence 46899999996421 27899999999999999999999999999999999999 99997 66653 12222
Q ss_pred -CcccCcchhhhHHHHHHccccccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 157 -PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 157 -~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
++.+.. ...|+.+|+.++ ....++.++.+++..+.++..+++++++|+|+..||...++.+.+++..
T Consensus 69 ~~q~~~~-~~~tv~~nl~~~---~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~ 136 (166)
T cd03223 69 LPQRPYL-PLGTLREQLIYP---WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKE 136 (166)
T ss_pred ECCCCcc-ccccHHHHhhcc---CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHH
Confidence 222221 236999999874 2345677888888888888889999999999999999889888888764
No 78
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.88 E-value=6.8e-23 Score=173.11 Aligned_cols=146 Identities=17% Similarity=0.199 Sum_probs=98.0
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---H
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---A 150 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~ 150 (229)
.++|+++||++.|++.. +++++||+|++||+++|+||||||||||+++|+|+++ |++|. .++|.++.. .
T Consensus 5 ~~~i~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~ 77 (225)
T PRK10247 5 SPLLQLQNVGYLAGDAK----ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS---PTSGTLLFEGEDISTLKPE 77 (225)
T ss_pred CceEEEeccEEeeCCce----eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCeEEECCEEcCcCCHH
Confidence 34799999999998654 8999999999999999999999999999999999999 99997 888864321 1
Q ss_pred HhhcCCCcccCcchh--hhHHHHHHccccccC--------------------------CCCCCCCCCchhhhhhccCCcc
Q 027060 151 HARRGAPWTFNPLLL--LNCLKNLRNQGSVYA--------------------------PSFDHGVGDPVEDDILVGLQHK 202 (229)
Q Consensus 151 ~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~--------------------------~~~~~~~~~~~~~~l~~~~~~r 202 (229)
..+..+.+.+|...+ .++.+|+.+...... ..++.++.+++..+.++..+++
T Consensus 78 ~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 157 (225)
T PRK10247 78 IYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPK 157 (225)
T ss_pred HHHhccEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 122334444444322 588888865321110 0111223334444444445555
Q ss_pred EEEecCCeeeecccCHHHHHHHHhh
Q 027060 203 VVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 203 vLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
++++|+|+..||...+..+.+++..
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~ 182 (225)
T PRK10247 158 VLLLDEITSALDESNKHNVNEIIHR 182 (225)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHH
Confidence 5666666666666567777776654
No 79
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.88 E-value=8.7e-23 Score=173.81 Aligned_cols=92 Identities=27% Similarity=0.411 Sum_probs=72.3
Q ss_pred eEEEeeeeEEcC-ccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----
Q 027060 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----- 149 (229)
Q Consensus 77 ~i~~~~ls~~y~-~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----- 149 (229)
+|+++||++.|+ +.. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++|. .++|.++..
T Consensus 1 ~l~~~~l~~~~~~~~~----il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 73 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQ----ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE---PSSGSILLEGTDITKLRGKK 73 (243)
T ss_pred CeEEEeeeeecCCCcc----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCccEEEECCEEhhhCCHHH
Confidence 478999999997 543 8999999999999999999999999999999999999 99997 888876431
Q ss_pred -HHhhcCCCcccCcc---hhhhHHHHHHcc
Q 027060 150 -AHARRGAPWTFNPL---LLLNCLKNLRNQ 175 (229)
Q Consensus 150 -~~~~~~~~~~~~~~---~~~tv~e~l~~~ 175 (229)
...+..+.+.+|.. ..+|+.+|+.++
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~ 103 (243)
T TIGR02315 74 LRKLRRRIGMIFQHYNLIERLTVLENVLHG 103 (243)
T ss_pred HHHHHhheEEEcCCCcccccccHHHHHhhc
Confidence 11223344444433 337999999754
No 80
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.88 E-value=4e-23 Score=174.06 Aligned_cols=95 Identities=19% Similarity=0.316 Sum_probs=72.2
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH------
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE------ 149 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~------ 149 (229)
+|+++||++.|++......+|+++||+|++||+++|+||||||||||+++|+|+++ |++|. .++|+++..
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 77 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK---PTSGSIIFDGKDLLKLSRRLR 77 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEccccchhhH
Confidence 47899999999764101127999999999999999999999999999999999999 99997 888875422
Q ss_pred HHhhcCCCcccCcc-----hhhhHHHHHHc
Q 027060 150 AHARRGAPWTFNPL-----LLLNCLKNLRN 174 (229)
Q Consensus 150 ~~~~~~~~~~~~~~-----~~~tv~e~l~~ 174 (229)
...+..+.+.+|.. ..+|+.+|+.+
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~ 107 (228)
T cd03257 78 KIRRKEIQMVFQDPMSSLNPRMTIGEQIAE 107 (228)
T ss_pred HHhhccEEEEecCchhhcCCcCCHHHHHHH
Confidence 12233444445443 23688888865
No 81
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=4.3e-23 Score=175.65 Aligned_cols=92 Identities=18% Similarity=0.373 Sum_probs=72.8
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH-Hhhc
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA-HARR 154 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~-~~~~ 154 (229)
+|+++||++.|++.. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++|. .++|.++... ..+.
T Consensus 2 ~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 74 (239)
T cd03296 2 SIEVRNVSKRFGDFV----ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER---PDSGTILFGGEDATDVPVQER 74 (239)
T ss_pred EEEEEeEEEEECCEE----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCCcccc
Confidence 489999999998754 8999999999999999999999999999999999999 99997 8888654221 1123
Q ss_pred CCCcccCcc---hhhhHHHHHHcc
Q 027060 155 GAPWTFNPL---LLLNCLKNLRNQ 175 (229)
Q Consensus 155 ~~~~~~~~~---~~~tv~e~l~~~ 175 (229)
.+.+.+|.+ ..+|+.+|+.++
T Consensus 75 ~i~~v~q~~~~~~~~tv~e~l~~~ 98 (239)
T cd03296 75 NVGFVFQHYALFRHMTVFDNVAFG 98 (239)
T ss_pred ceEEEecCCcccCCCCHHHHHhhh
Confidence 344444443 236899998764
No 82
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.88 E-value=6.9e-23 Score=174.05 Aligned_cols=144 Identities=22% Similarity=0.227 Sum_probs=99.6
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH--HHhh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE--AHAR 153 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~--~~~~ 153 (229)
+|+++|+++.|++.. +|+++||+|.+|++++|+|+||||||||+++|+|+++ |++|. .++|.++.. ....
T Consensus 1 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~i~~~~~~~~ 73 (236)
T TIGR03864 1 ALEVAGLSFAYGARR----ALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV---AQEGQISVAGHDLRRAPRAAL 73 (236)
T ss_pred CEEEEeeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEcccCChhhh
Confidence 478999999998654 8999999999999999999999999999999999999 99997 888875421 1111
Q ss_pred cCCCcccCcc---hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCCccE
Q 027060 154 RGAPWTFNPL---LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQHKV 203 (229)
Q Consensus 154 ~~~~~~~~~~---~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~~rv 203 (229)
..+.+.+|.. ..+++.+|+.+...... ..++.++.+++..+.++..++++
T Consensus 74 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~l 153 (236)
T TIGR03864 74 ARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPAL 153 (236)
T ss_pred hhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 2333333332 33788888875422110 01223444455555555556666
Q ss_pred EEecCCeeeecccCHHHHHHHHhh
Q 027060 204 VIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 204 Li~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+++|+|+..||...+..+.+++..
T Consensus 154 lllDEP~~~LD~~~~~~l~~~l~~ 177 (236)
T TIGR03864 154 LLLDEPTVGLDPASRAAIVAHVRA 177 (236)
T ss_pred EEEcCCccCCCHHHHHHHHHHHHH
Confidence 666666666666677777777653
No 83
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.88 E-value=3.6e-23 Score=172.86 Aligned_cols=143 Identities=16% Similarity=0.199 Sum_probs=96.6
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH-HhhcC
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA-HARRG 155 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~-~~~~~ 155 (229)
|+++|+++.|++.. +|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|. .++|.++... ..+..
T Consensus 1 i~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~v~~~g~~~~~~~~~~~~ 73 (213)
T cd03301 1 VELENVTKRFGNVT----ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE---PTSGRIYIGGRDVTDLPPKDRD 73 (213)
T ss_pred CEEEeeEEEECCee----eeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCCcccce
Confidence 47899999998754 8999999999999999999999999999999999999 99997 8888754221 11123
Q ss_pred CCcccCcc---hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCCccEEE
Q 027060 156 APWTFNPL---LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQHKVVI 205 (229)
Q Consensus 156 ~~~~~~~~---~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~~rvLi 205 (229)
+.+.+|.. ...|+.+|+.++..... ..++.++.+++..+.++..++++++
T Consensus 74 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~lll 153 (213)
T cd03301 74 IAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFL 153 (213)
T ss_pred EEEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 44444433 23688999876422110 0122333444444444455555566
Q ss_pred ecCCeeeecccCHHHHHHHHhh
Q 027060 206 VDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 206 ~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+|+|+..||....+.+.+++..
T Consensus 154 lDEPt~~LD~~~~~~l~~~l~~ 175 (213)
T cd03301 154 MDEPLSNLDAKLRVQMRAELKR 175 (213)
T ss_pred EcCCcccCCHHHHHHHHHHHHH
Confidence 6666666665567777776653
No 84
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.2e-22 Score=173.32 Aligned_cols=145 Identities=20% Similarity=0.184 Sum_probs=96.4
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HH
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AH 151 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~ 151 (229)
..|+++|+++.|++.. +|+|+||+|.+|++++|+|+||||||||+++|+|+++ |++|. .++|.++.. ..
T Consensus 2 ~~l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 74 (241)
T PRK14250 2 NEIEFKEVSYSSFGKE----ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID---PTEGSILIDGVDIKTIDVID 74 (241)
T ss_pred ceEEEEeEEEEeCCee----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEhhhcChHH
Confidence 4689999999997654 7999999999999999999999999999999999999 99997 888876432 11
Q ss_pred hhcCCCcccCcchh--hhHHHHHHccccccC------------------------CCCCCCCCCchhhhhhccCCccEEE
Q 027060 152 ARRGAPWTFNPLLL--LNCLKNLRNQGSVYA------------------------PSFDHGVGDPVEDDILVGLQHKVVI 205 (229)
Q Consensus 152 ~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~------------------------~~~~~~~~~~~~~~l~~~~~~rvLi 205 (229)
.+..+.+.+|.+.+ .++.+|+.+...... ..++.++.+++..+.++..++++++
T Consensus 75 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll 154 (241)
T PRK14250 75 LRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLL 154 (241)
T ss_pred hhhcEEEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 22334444444322 588888875422110 0112233333333444444455555
Q ss_pred ecCCeeeecccCHHHHHHHHhh
Q 027060 206 VDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 206 ~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+|+|+..||...+..+.+++..
T Consensus 155 lDEPt~~LD~~~~~~l~~~l~~ 176 (241)
T PRK14250 155 LDEPTSALDPTSTEIIEELIVK 176 (241)
T ss_pred EeCCcccCCHHHHHHHHHHHHH
Confidence 5555555555557777666653
No 85
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=8.7e-23 Score=168.77 Aligned_cols=134 Identities=17% Similarity=0.265 Sum_probs=103.5
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH-----HH
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK-----EA 150 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~-----~~ 150 (229)
||+++|++++..++. ++++++|++.+||+++|+||||||||||||.|+|.+. |++|+ .++|.+.. ..
T Consensus 1 mi~a~nls~~~~Gr~----ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~---p~~G~v~~~g~~l~~~~~~~l 73 (259)
T COG4559 1 MIRAENLSYSLAGRR----LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS---PDSGEVTLNGVPLNSWPPEEL 73 (259)
T ss_pred CeeeeeeEEEeecce----eccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC---CCCCeEeeCCcChhhCCHHHH
Confidence 589999999998876 8999999999999999999999999999999999999 99997 88988642 33
Q ss_pred HhhcCC-CcccCcchhhhHHHHHHccccccCCCCC-----------------CCCCCchhhhhhccCCccE---------
Q 027060 151 HARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFD-----------------HGVGDPVEDDILVGLQHKV--------- 203 (229)
Q Consensus 151 ~~~~~~-~~~~~~~~~~tv~e~l~~~~~~~~~~~~-----------------~~~~~~~~~~l~~~~~~rv--------- 203 (229)
...+++ ++.....+.++|.|-+.++...+..... .+...+....++.|+++||
T Consensus 74 A~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl 153 (259)
T COG4559 74 ARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQL 153 (259)
T ss_pred HHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHc
Confidence 444554 6666555568999999998765532111 2334555566777777776
Q ss_pred --EEecCCeeeecccC
Q 027060 204 --VIVDGNYLFLDGGV 217 (229)
Q Consensus 204 --Li~d~~~LlLDEP~ 217 (229)
.+-++.+|+||||+
T Consensus 154 ~~~v~~~r~L~LDEPt 169 (259)
T COG4559 154 WPPVPSGRWLFLDEPT 169 (259)
T ss_pred cCCCCCCceEEecCCc
Confidence 44455688888885
No 86
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.88 E-value=8.5e-23 Score=171.54 Aligned_cols=96 Identities=17% Similarity=0.215 Sum_probs=72.3
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----H
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-----A 150 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-----~ 150 (229)
+|+++||++.|++......+|+++||+|.+|++++|+||||||||||+++|+|+++ |++|. .++|.++.. .
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~ 77 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN---PTSGEVLFNGQSLSKLSSNER 77 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEhhhcCHhHH
Confidence 47899999999752111237999999999999999999999999999999999999 99997 888876422 1
Q ss_pred --HhhcCCCcccCcc---hhhhHHHHHHcc
Q 027060 151 --HARRGAPWTFNPL---LLLNCLKNLRNQ 175 (229)
Q Consensus 151 --~~~~~~~~~~~~~---~~~tv~e~l~~~ 175 (229)
.++..+.+.+|.. ..+++.+|+.+.
T Consensus 78 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~ 107 (221)
T TIGR02211 78 AKLRNKKLGFIYQFHHLLPDFTALENVAMP 107 (221)
T ss_pred HHHHHhcEEEEecccccCCCCcHHHHHHHH
Confidence 1113344444443 236899998763
No 87
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.88 E-value=6.4e-23 Score=184.39 Aligned_cols=94 Identities=16% Similarity=0.272 Sum_probs=76.4
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH-Hhhc
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA-HARR 154 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~-~~~~ 154 (229)
+|+++|+++.|++.. +|+++||+|.+||+++|+||||||||||+|+|+|+++ |++|. .++|+++... ..++
T Consensus 2 ~L~i~~l~~~~~~~~----~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~i~g~~i~~~~~~~r 74 (353)
T PRK10851 2 SIEIANIKKSFGRTQ----VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH---QTSGHIRFHGTDVSRLHARDR 74 (353)
T ss_pred EEEEEEEEEEeCCeE----EEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHHC
Confidence 489999999998754 8999999999999999999999999999999999999 99997 8888764321 1223
Q ss_pred CCCcccCcc---hhhhHHHHHHcccc
Q 027060 155 GAPWTFNPL---LLLNCLKNLRNQGS 177 (229)
Q Consensus 155 ~~~~~~~~~---~~~tv~e~l~~~~~ 177 (229)
.+.+.||.+ +.+|+.+|+.++..
T Consensus 75 ~i~~v~Q~~~l~p~~tv~eni~~~~~ 100 (353)
T PRK10851 75 KVGFVFQHYALFRHMTVFDNIAFGLT 100 (353)
T ss_pred CEEEEecCcccCCCCcHHHHHHhhhh
Confidence 455555544 34899999998643
No 88
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.88 E-value=9.5e-23 Score=169.43 Aligned_cols=143 Identities=20% Similarity=0.141 Sum_probs=96.5
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH--HHhhc
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE--AHARR 154 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~--~~~~~ 154 (229)
|+++|+++.|++.. +|+++||+|.+|+++||+|+||||||||+++|+|+++ |++|. .++|.++.. ...+.
T Consensus 1 l~i~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (201)
T cd03231 1 LEADELTCERDGRA----LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP---PLAGRVLLNGGPLDFQRDSIAR 73 (201)
T ss_pred CEEEEEEEEeCCce----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccccHHhhh
Confidence 47899999998754 7999999999999999999999999999999999999 99997 788876421 12223
Q ss_pred CCCcccCcc---hhhhHHHHHHccccccC---------------------CCCCCCCCCchhhhhhccCCccEEEecCCe
Q 027060 155 GAPWTFNPL---LLLNCLKNLRNQGSVYA---------------------PSFDHGVGDPVEDDILVGLQHKVVIVDGNY 210 (229)
Q Consensus 155 ~~~~~~~~~---~~~tv~e~l~~~~~~~~---------------------~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~ 210 (229)
++.+.+|.. ..+|+.+|+.+...... ..++.++.+++..+.++..+++++++|+|+
T Consensus 74 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt 153 (201)
T cd03231 74 GLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPT 153 (201)
T ss_pred heEEeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 343333332 33789999876432110 012223344444444444555555555555
Q ss_pred eeecccCHHHHHHHHhh
Q 027060 211 LFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 211 LlLDEP~~~~l~~~l~~ 227 (229)
..||...++.+.+++..
T Consensus 154 ~~LD~~~~~~l~~~l~~ 170 (201)
T cd03231 154 TALDKAGVARFAEAMAG 170 (201)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 55555567777777653
No 89
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.88 E-value=6.5e-23 Score=177.71 Aligned_cols=94 Identities=20% Similarity=0.280 Sum_probs=73.6
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---- 149 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---- 149 (229)
+++|+++||++.|++.. +|+++||+|++|++++|+|+||||||||+++|+|+++ |++|. .++|+++..
T Consensus 5 ~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~ 77 (269)
T PRK11831 5 ANLVDMRGVSFTRGNRC----IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA---PDHGEILFDGENIPAMSRS 77 (269)
T ss_pred cceEEEeCeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEccccChh
Confidence 45899999999998654 8999999999999999999999999999999999999 99997 888865421
Q ss_pred -H-HhhcCCCcccCcc---hhhhHHHHHHcc
Q 027060 150 -A-HARRGAPWTFNPL---LLLNCLKNLRNQ 175 (229)
Q Consensus 150 -~-~~~~~~~~~~~~~---~~~tv~e~l~~~ 175 (229)
. ..+..+.+.+|.. ..+|+.+|+.++
T Consensus 78 ~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~ 108 (269)
T PRK11831 78 RLYTVRKRMSMLFQSGALFTDMNVFDNVAYP 108 (269)
T ss_pred hHHHHhhcEEEEecccccCCCCCHHHHHHHH
Confidence 1 1122343444433 236899998753
No 90
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.88 E-value=6.8e-23 Score=171.20 Aligned_cols=144 Identities=19% Similarity=0.205 Sum_probs=95.6
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH------H
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE------A 150 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~------~ 150 (229)
|+++|+++.|++.. .+|+++||+|.+|++++|+|+||||||||+++|+|+++ |++|. .++|.++.. .
T Consensus 1 l~~~~l~~~~~~~~---~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~~ 74 (214)
T cd03292 1 IEFINVTKTYPNGT---AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL---PTSGTIRVNGQDVSDLRGRAIP 74 (214)
T ss_pred CEEEEEEEEeCCCc---eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcccCCHHHHH
Confidence 46899999996421 27999999999999999999999999999999999999 99997 788875321 1
Q ss_pred HhhcCCCcccCcc---hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCC
Q 027060 151 HARRGAPWTFNPL---LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQ 200 (229)
Q Consensus 151 ~~~~~~~~~~~~~---~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~ 200 (229)
..+..+.+.+|.+ ..+++.+|+.++..... ..++.++.+++..+.++..+
T Consensus 75 ~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 154 (214)
T cd03292 75 YLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNS 154 (214)
T ss_pred HHHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcC
Confidence 1223444444443 23689999876432110 01122333444444444445
Q ss_pred ccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 201 HKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 201 ~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
++++++|+|+..||...++.+.+++..
T Consensus 155 p~llllDEPt~~LD~~~~~~~~~~l~~ 181 (214)
T cd03292 155 PTILIADEPTGNLDPDTTWEIMNLLKK 181 (214)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence 555555555555555567777776653
No 91
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.88 E-value=7.8e-23 Score=170.61 Aligned_cols=142 Identities=15% Similarity=0.196 Sum_probs=97.4
Q ss_pred EEeeeeEEcCc--cccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060 79 EARCMDEVYDA--LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA 152 (229)
Q Consensus 79 ~~~~ls~~y~~--~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~ 152 (229)
+++|+++.|++ .. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++|. .++|.++.. ...
T Consensus 1 ~~~~l~~~~~~~~~~----il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 73 (211)
T cd03225 1 ELKNLSFSYPDGARP----ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG---PTSGEVLVDGKDLTKLSLKEL 73 (211)
T ss_pred CceeEEEecCCCCee----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEcccCCHHHH
Confidence 36899999976 43 7999999999999999999999999999999999999 99997 888865421 122
Q ss_pred hcCCCcccCcc----hhhhHHHHHHcccccc---------------------------CCCCCCCCCCchhhhhhccCCc
Q 027060 153 RRGAPWTFNPL----LLLNCLKNLRNQGSVY---------------------------APSFDHGVGDPVEDDILVGLQH 201 (229)
Q Consensus 153 ~~~~~~~~~~~----~~~tv~e~l~~~~~~~---------------------------~~~~~~~~~~~~~~~l~~~~~~ 201 (229)
+..+.+.+|.. ...++.+|+.+..... ...++.++.+++..+.++..++
T Consensus 74 ~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p 153 (211)
T cd03225 74 RRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDP 153 (211)
T ss_pred HhhceEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 23344444442 2368888887532110 0012234445555555555566
Q ss_pred cEEEecCCeeeecccCHHHHHHHHhh
Q 027060 202 KVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 202 rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+++++|+|+..||...+..+.+++..
T Consensus 154 ~llllDEPt~~LD~~~~~~~~~~l~~ 179 (211)
T cd03225 154 DILLLDEPTAGLDPAGRRELLELLKK 179 (211)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 66666666666666677777777653
No 92
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=9.2e-23 Score=177.33 Aligned_cols=145 Identities=17% Similarity=0.206 Sum_probs=99.2
Q ss_pred CeEEEeeeeEEcCc-cccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---H
Q 027060 76 PVVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---A 150 (229)
Q Consensus 76 ~~i~~~~ls~~y~~-~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~ 150 (229)
++|+++|+++.|++ .. +|+|+||+|.+||+++|+|+||||||||+++|+|+++ |++|. .++|.++.. .
T Consensus 3 ~~l~~~~l~~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~ 75 (274)
T PRK13647 3 NIIEVEDLHFRYKDGTK----ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL---PQRGRVKVMGREVNAENEK 75 (274)
T ss_pred ceEEEEEEEEEeCCCCe----eeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCceEEEECCEECCCCCHH
Confidence 47999999999963 33 8999999999999999999999999999999999999 99997 888875421 1
Q ss_pred HhhcCCCcccCcc----hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccC
Q 027060 151 HARRGAPWTFNPL----LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGL 199 (229)
Q Consensus 151 ~~~~~~~~~~~~~----~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~ 199 (229)
..+..+.+.+|.+ ...++.+|+.++..... ..++.++.+++..+.++..
T Consensus 76 ~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~ 155 (274)
T PRK13647 76 WVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAM 155 (274)
T ss_pred HHHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 1223344555543 22689999986432110 0122233444444444445
Q ss_pred CccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 200 ~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
++++|++|+|+..||...+.++.+++..
T Consensus 156 ~p~llllDEPt~~LD~~~~~~l~~~l~~ 183 (274)
T PRK13647 156 DPDVIVLDEPMAYLDPRGQETLMEILDR 183 (274)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 5555555555555555567777777653
No 93
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.2e-22 Score=174.11 Aligned_cols=95 Identities=18% Similarity=0.191 Sum_probs=74.2
Q ss_pred CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCC-----Cce-EecCCCH
Q 027060 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KAS-SFDSQDP 147 (229)
Q Consensus 74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~-----~G~-~~~g~~~ 147 (229)
|+.+|+++||++.|++.. +|+|+||+|.+||+++|+|+||||||||+++|+|+++ |+ +|. .++|+++
T Consensus 1 ~~~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~~~~~~G~i~~~g~~i 73 (253)
T PRK14267 1 MKFAIETVNLRVYYGSNH----VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLE---LNEEARVEGEVRLFGRNI 73 (253)
T ss_pred CcceEEEEeEEEEeCCee----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---cccCCCCceEEEECCEEc
Confidence 356899999999998654 8999999999999999999999999999999999998 74 897 8888764
Q ss_pred H-----HHHhhcCCCcccCcc---hhhhHHHHHHcc
Q 027060 148 K-----EAHARRGAPWTFNPL---LLLNCLKNLRNQ 175 (229)
Q Consensus 148 ~-----~~~~~~~~~~~~~~~---~~~tv~e~l~~~ 175 (229)
. ....+..+.+.+|.. ..+|+.+|+.++
T Consensus 74 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~ 109 (253)
T PRK14267 74 YSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIG 109 (253)
T ss_pred cccccChHHHhhceeEEecCCccCCCCcHHHHHHHH
Confidence 2 112233444444443 236899998764
No 94
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.88 E-value=6.1e-23 Score=165.47 Aligned_cols=122 Identities=18% Similarity=0.238 Sum_probs=100.6
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----HHh
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----AHA 152 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----~~~ 152 (229)
|+++|+++.|++.. +++++||+|++||+++|+|+||||||||+++|+|+++ |++|. .++|.++.. ...
T Consensus 1 l~~~~l~~~~~~~~----vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~~ 73 (163)
T cd03216 1 LELRGITKRFGGVK----ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK---PDSGEILVDGKEVSFASPRDAR 73 (163)
T ss_pred CEEEEEEEEECCeE----EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCcCCHHHHH
Confidence 47899999998754 8999999999999999999999999999999999999 99997 788765421 111
Q ss_pred hcCCCcccCcchhhhHHHHHHccccccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 153 RRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 153 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+..+.+.++ ++.++.+++..+.++..+++++++|+|+..||...++.+.+++..
T Consensus 74 ~~~i~~~~q---------------------LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~ 127 (163)
T cd03216 74 RAGIAMVYQ---------------------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRR 127 (163)
T ss_pred hcCeEEEEe---------------------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 222333333 677888888888888899999999999999999999999888864
No 95
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1e-22 Score=173.04 Aligned_cols=94 Identities=19% Similarity=0.227 Sum_probs=73.9
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---- 149 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---- 149 (229)
+++|+++|+++.|++.. +|+++||+|.+||+++|+|+||||||||+++|+|+++ |++|. .++|.++..
T Consensus 3 ~~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~ 75 (237)
T PRK11614 3 KVMLSFDKVSAHYGKIQ----ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR---ATSGRIVFDGKDITDWQTA 75 (237)
T ss_pred ccEEEEEeEEEeeCCce----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCceEEECCEecCCCCHH
Confidence 45799999999998654 8999999999999999999999999999999999999 99997 888875421
Q ss_pred HHhhcCCCcccCcc---hhhhHHHHHHcc
Q 027060 150 AHARRGAPWTFNPL---LLLNCLKNLRNQ 175 (229)
Q Consensus 150 ~~~~~~~~~~~~~~---~~~tv~e~l~~~ 175 (229)
...+..+.+.++.. ..+++.+|+.+.
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~ 104 (237)
T PRK11614 76 KIMREAVAIVPEGRRVFSRMTVEENLAMG 104 (237)
T ss_pred HHHHhCEEEeccCcccCCCCcHHHHHHHh
Confidence 11233344444332 336888988764
No 96
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.88 E-value=9.5e-23 Score=173.51 Aligned_cols=144 Identities=18% Similarity=0.245 Sum_probs=96.4
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----H
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-----A 150 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-----~ 150 (229)
+|+++|+++.|++.. +|+|+||+|.+||+++|+|+||||||||+++|+|+++ |++|. .++|.++.. .
T Consensus 1 ~l~~~~l~~~~~~~~----il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 73 (240)
T PRK09493 1 MIEFKNVSKHFGPTQ----VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE---ITSGDLIVDGLKVNDPKVDER 73 (240)
T ss_pred CEEEEeEEEEECCeE----EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCChhHH
Confidence 478999999998654 8999999999999999999999999999999999999 99997 888875421 1
Q ss_pred HhhcCCCcccCcc---hhhhHHHHHHcccc-ccC---------------------------CCCCCCCCCchhhhhhccC
Q 027060 151 HARRGAPWTFNPL---LLLNCLKNLRNQGS-VYA---------------------------PSFDHGVGDPVEDDILVGL 199 (229)
Q Consensus 151 ~~~~~~~~~~~~~---~~~tv~e~l~~~~~-~~~---------------------------~~~~~~~~~~~~~~l~~~~ 199 (229)
..+..+.+.+|.. ..+++.+|+.++.. ... ..++.++.+++..+.++..
T Consensus 74 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~ 153 (240)
T PRK09493 74 LIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAV 153 (240)
T ss_pred HHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhc
Confidence 2223344444432 33689999876421 000 0112233334444444444
Q ss_pred CccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 200 ~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
.++++++|+|+..||...+..+.+++..
T Consensus 154 ~p~llllDEP~~~LD~~~~~~l~~~l~~ 181 (240)
T PRK09493 154 KPKLMLFDEPTSALDPELRHEVLKVMQD 181 (240)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 5555555555555555567777777653
No 97
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.3e-22 Score=173.76 Aligned_cols=94 Identities=23% Similarity=0.279 Sum_probs=74.0
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC-----CCce-EecCCCHH
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQDPK 148 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p-----~~G~-~~~g~~~~ 148 (229)
|++|+++|+++.|++.. +|+++||+|++|++++|+|+||||||||+++|+|+++ | ++|. .++|.++.
T Consensus 1 ~~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~g~~i~ 73 (250)
T PRK14247 1 MNKIEIRDLKVSFGQVE----VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIE---LYPEARVSGEVYLDGQDIF 73 (250)
T ss_pred CceEEEEeeEEEECCee----eeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCCCCceEEEECCEECC
Confidence 45799999999998754 8999999999999999999999999999999999987 5 5897 88887542
Q ss_pred H---HHhhcCCCcccCcch---hhhHHHHHHcc
Q 027060 149 E---AHARRGAPWTFNPLL---LLNCLKNLRNQ 175 (229)
Q Consensus 149 ~---~~~~~~~~~~~~~~~---~~tv~e~l~~~ 175 (229)
. ...+..+.+.+|.+. .+|+.+|+.++
T Consensus 74 ~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~ 106 (250)
T PRK14247 74 KMDVIELRRRVQMVFQIPNPIPNLSIFENVALG 106 (250)
T ss_pred cCCHHHHhccEEEEeccCccCCCCcHHHHHHHH
Confidence 1 122334555555432 37899999764
No 98
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.88 E-value=9.5e-23 Score=169.38 Aligned_cols=141 Identities=13% Similarity=0.094 Sum_probs=94.5
Q ss_pred EeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH---H----HH
Q 027060 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK---E----AH 151 (229)
Q Consensus 80 ~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~---~----~~ 151 (229)
++||++.|++.. +|+++||+|.+||+++|+||||||||||+++|+|+++ |++|+ .++|.++. . ..
T Consensus 1 i~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~ 73 (206)
T TIGR03608 1 LKNISKKFGDKI----ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK---FDSGQVYLNGKETPPLNSKKASKF 73 (206)
T ss_pred CcceEEEECCEE----EEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccchhhHHHH
Confidence 478999998654 8999999999999999999999999999999999999 99997 88887631 1 12
Q ss_pred hhcCCCcccCcc---hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCCc
Q 027060 152 ARRGAPWTFNPL---LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQH 201 (229)
Q Consensus 152 ~~~~~~~~~~~~---~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~~ 201 (229)
.+..+.+.++.. ...|+.+|+.+...... ..++.++.+++..+.++..++
T Consensus 74 ~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p 153 (206)
T TIGR03608 74 RREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDP 153 (206)
T ss_pred HHhCeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 233444444443 23789898876321110 011223334444444444455
Q ss_pred cEEEecCCeeeecccCHHHHHHHHhh
Q 027060 202 KVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 202 rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+++++|+|+..||...+..+.+++..
T Consensus 154 ~llllDEPt~~LD~~~~~~l~~~l~~ 179 (206)
T TIGR03608 154 PLILADEPTGSLDPKNRDEVLDLLLE 179 (206)
T ss_pred CEEEEeCCcCCCCHHHHHHHHHHHHH
Confidence 55555555555555567777777653
No 99
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.88 E-value=1.5e-22 Score=172.36 Aligned_cols=93 Identities=24% Similarity=0.365 Sum_probs=73.9
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----H
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----A 150 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----~ 150 (229)
++|+++|+++.|++.. +|+++||+|.+||+++|+|+||||||||+++|+|+++ |++|. .++|.++.. .
T Consensus 1 ~~i~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~ 73 (242)
T TIGR03411 1 PILYLEGLSVSFDGFK----ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR---PDEGSVLFGGTDLTGLPEHQ 73 (242)
T ss_pred CeEEEEeeEEEcCCeE----EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCeecCCCCHHH
Confidence 3689999999998654 8999999999999999999999999999999999999 99997 888875421 1
Q ss_pred HhhcCCCcccCcc---hhhhHHHHHHcc
Q 027060 151 HARRGAPWTFNPL---LLLNCLKNLRNQ 175 (229)
Q Consensus 151 ~~~~~~~~~~~~~---~~~tv~e~l~~~ 175 (229)
..+.++.+.+|.. ..+|+.+|+.++
T Consensus 74 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~ 101 (242)
T TIGR03411 74 IARAGIGRKFQKPTVFENLTVFENLELA 101 (242)
T ss_pred HHhcCeeEeccccccCCCCCHHHHHHHh
Confidence 2233444444443 337999998764
No 100
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.87 E-value=1e-22 Score=172.10 Aligned_cols=143 Identities=16% Similarity=0.209 Sum_probs=95.5
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----HHh
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----AHA 152 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----~~~ 152 (229)
|+++||++.|++.. +|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+ .++|.++.. ...
T Consensus 1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (230)
T TIGR03410 1 LEVSNLNVYYGQSH----ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP---VKSGSIRLDGEDITKLPPHERA 73 (230)
T ss_pred CEEEeEEEEeCCeE----EecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCCCCHHHHH
Confidence 47899999998654 8999999999999999999999999999999999999 99997 888865321 111
Q ss_pred hcCCCcccCc---chhhhHHHHHHccccccCC-------------------------CCCCCCCCchhhhhhccCCccEE
Q 027060 153 RRGAPWTFNP---LLLLNCLKNLRNQGSVYAP-------------------------SFDHGVGDPVEDDILVGLQHKVV 204 (229)
Q Consensus 153 ~~~~~~~~~~---~~~~tv~e~l~~~~~~~~~-------------------------~~~~~~~~~~~~~l~~~~~~rvL 204 (229)
+..+.+.+|. +..+++.+|+.++...+.. .++.++.+++..+.++..+++++
T Consensus 74 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~il 153 (230)
T TIGR03410 74 RAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLL 153 (230)
T ss_pred HhCeEEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 2334344433 3346899998764321110 01122333333344444455555
Q ss_pred EecCCeeeecccCHHHHHHHHhh
Q 027060 205 IVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 205 i~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
++|+|+..||...+..+.+++.+
T Consensus 154 llDEPt~~LD~~~~~~l~~~l~~ 176 (230)
T TIGR03410 154 LLDEPTEGIQPSIIKDIGRVIRR 176 (230)
T ss_pred EecCCcccCCHHHHHHHHHHHHH
Confidence 55555555555567777777654
No 101
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.8e-22 Score=175.91 Aligned_cols=148 Identities=14% Similarity=0.125 Sum_probs=100.3
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HH
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AH 151 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~ 151 (229)
++|+++||++.|++.. ...+|+|+||+|.+||+++|+|+||||||||+++|+|+++ |++|. .++|.++.. ..
T Consensus 3 ~~l~~~~l~~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 78 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQ-EKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE---AESGQIIIDGDLLTEENVWD 78 (279)
T ss_pred ceEEEEeEEEEcCCCC-cCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECCcCcHHH
Confidence 4799999999997421 1137999999999999999999999999999999999999 99997 888876421 12
Q ss_pred hhcCCCcccCcc----hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCC
Q 027060 152 ARRGAPWTFNPL----LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQ 200 (229)
Q Consensus 152 ~~~~~~~~~~~~----~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~ 200 (229)
.+..+++.+|.+ ...|+.+|+.++..... ..++.++.+++..+.++..+
T Consensus 79 ~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~ 158 (279)
T PRK13650 79 IRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMR 158 (279)
T ss_pred HHhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 223455556553 22699999987532110 01122334444444444455
Q ss_pred ccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 201 HKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 201 ~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+++|++|+++..||...++.+.+++..
T Consensus 159 p~lLlLDEPt~~LD~~~~~~l~~~l~~ 185 (279)
T PRK13650 159 PKIIILDEATSMLDPEGRLELIKTIKG 185 (279)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 555555555555555567777776643
No 102
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.87 E-value=1.6e-22 Score=186.40 Aligned_cols=146 Identities=21% Similarity=0.241 Sum_probs=106.4
Q ss_pred CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH----
Q 027060 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK---- 148 (229)
Q Consensus 74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~---- 148 (229)
..++++++|++|+|++.. +|+++||+|.+||+++|+|.||||||||+|+|+|.++ |++|+ .++|+...
T Consensus 5 ~~~ll~~~~i~K~FggV~----AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~---p~~G~I~~~G~~~~~~sp 77 (500)
T COG1129 5 TPPLLELRGISKSFGGVK----ALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP---PDSGEILIDGKPVAFSSP 77 (500)
T ss_pred ccceeeeecceEEcCCce----eeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc---CCCceEEECCEEccCCCH
Confidence 345899999999999876 9999999999999999999999999999999999999 99997 88988532
Q ss_pred HHHhhcCCCcccCcchh---hhHHHHHHccccccCC--CCC----------------------CCCCCchhhhhhccCCc
Q 027060 149 EAHARRGAPWTFNPLLL---LNCLKNLRNQGSVYAP--SFD----------------------HGVGDPVEDDILVGLQH 201 (229)
Q Consensus 149 ~~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~--~~~----------------------~~~~~~~~~~l~~~~~~ 201 (229)
......|+..++|...+ +||.||+.++.....+ ..+ ....+.......+.+.+
T Consensus 78 ~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIA 157 (500)
T COG1129 78 RDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIA 157 (500)
T ss_pred HHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHH
Confidence 23456788777776654 9999999987654331 111 01111112222233345
Q ss_pred cEEEecCCeeeecccC----HHHHHHHHh
Q 027060 202 KVVIVDGNYLFLDGGV----WKDVSSMFD 226 (229)
Q Consensus 202 rvLi~d~~~LlLDEP~----~~~l~~~l~ 226 (229)
|.+..++.+++||||+ .++...+|+
T Consensus 158 rAl~~~arllIlDEPTaaLt~~E~~~Lf~ 186 (500)
T COG1129 158 RALSFDARVLILDEPTAALTVKETERLFD 186 (500)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 5577788888888884 444444443
No 103
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=1.5e-22 Score=171.99 Aligned_cols=91 Identities=26% Similarity=0.386 Sum_probs=71.8
Q ss_pred EEEeeeeEEcCc-cccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH------
Q 027060 78 VEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE------ 149 (229)
Q Consensus 78 i~~~~ls~~y~~-~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~------ 149 (229)
|+++||++.|++ .. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++|. .++|.++..
T Consensus 1 l~~~~l~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 73 (241)
T cd03256 1 IEVENLSKTYPNGKK----ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE---PTSGSVLIDGTDINKLKGKAL 73 (241)
T ss_pred CEEeeEEEecCCccE----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCCceEEECCEeccccCHhHH
Confidence 468999999986 43 8999999999999999999999999999999999999 99997 888875421
Q ss_pred HHhhcCCCcccCcc---hhhhHHHHHHcc
Q 027060 150 AHARRGAPWTFNPL---LLLNCLKNLRNQ 175 (229)
Q Consensus 150 ~~~~~~~~~~~~~~---~~~tv~e~l~~~ 175 (229)
...+..+.+.+|.. ..+|+.+|+.+.
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~ 102 (241)
T cd03256 74 RQLRRQIGMIFQQFNLIERLSVLENVLSG 102 (241)
T ss_pred HHHHhccEEEcccCcccccCcHHHHHHhh
Confidence 11233444444443 337899998753
No 104
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.4e-22 Score=176.56 Aligned_cols=151 Identities=16% Similarity=0.184 Sum_probs=103.9
Q ss_pred CCCeEEEeeeeEEcCcccc--ccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-
Q 027060 74 EIPVVEARCMDEVYDALAQ--RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE- 149 (229)
Q Consensus 74 ~~~~i~~~~ls~~y~~~~~--~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~- 149 (229)
|.++|+++|+++.|++... ...+|+++||+|.+||+++|+|+||||||||+++|+|+++ |++|. .++|.++..
T Consensus 1 ~~~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~i~g~~i~~~ 77 (280)
T PRK13633 1 MNEMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI---PSEGKVYVDGLDTSDE 77 (280)
T ss_pred CCceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEecccc
Confidence 3568999999999974210 1238999999999999999999999999999999999999 99997 888876532
Q ss_pred ---HHhhcCCCcccCcch----hhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhh
Q 027060 150 ---AHARRGAPWTFNPLL----LLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDI 195 (229)
Q Consensus 150 ---~~~~~~~~~~~~~~~----~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l 195 (229)
...+..+.+.+|.+. ..++.+|+.++..... ..++.++.+++..+.
T Consensus 78 ~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~lar 157 (280)
T PRK13633 78 ENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAG 157 (280)
T ss_pred ccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHH
Confidence 112334445555431 2478888876432110 112234445555555
Q ss_pred hccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 196 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 196 ~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
++...++++++|+|+..||...+..+.+++..
T Consensus 158 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~ 189 (280)
T PRK13633 158 ILAMRPECIIFDEPTAMLDPSGRREVVNTIKE 189 (280)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 55556666666666666666678888777754
No 105
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.4e-22 Score=176.77 Aligned_cols=147 Identities=18% Similarity=0.176 Sum_probs=103.3
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HH
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AH 151 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~ 151 (229)
++|+++||++.|++.. ..+|+++||+|.+||+++|+|+||||||||+++|+|+++ |++|. .++|.++.. ..
T Consensus 4 ~~l~~~~l~~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~---p~~G~i~~~g~~i~~~~~~~ 78 (279)
T PRK13635 4 EIIRVEHISFRYPDAA--TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL---PEAGTITVGGMVLSEETVWD 78 (279)
T ss_pred ceEEEEEEEEEeCCCC--ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECCcCcHHH
Confidence 4799999999997521 127999999999999999999999999999999999999 99997 888876421 11
Q ss_pred hhcCCCcccCcc----hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCC
Q 027060 152 ARRGAPWTFNPL----LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQ 200 (229)
Q Consensus 152 ~~~~~~~~~~~~----~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~ 200 (229)
.+..+.+.+|.+ ...|+.+|+.++..... ..++.++.+++..+.++..+
T Consensus 79 ~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~ 158 (279)
T PRK13635 79 VRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQ 158 (279)
T ss_pred HhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 223455555543 22689999976422110 01223444555555555556
Q ss_pred ccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 201 HKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 201 ~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+++|++|+|+..||...+..+.+++..
T Consensus 159 p~lllLDEPt~gLD~~~~~~l~~~l~~ 185 (279)
T PRK13635 159 PDIIILDEATSMLDPRGRREVLETVRQ 185 (279)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 666666666666666678888777753
No 106
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=3.1e-22 Score=169.01 Aligned_cols=145 Identities=19% Similarity=0.224 Sum_probs=96.5
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA 152 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~ 152 (229)
.|+++|+++.|++.. .+++++||+|++|++++|+||||||||||+++|+|+++ |++|. .++|.++.. ...
T Consensus 2 ~l~~~~l~~~~~~~~---~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 75 (229)
T cd03254 2 EIEFENVNFSYDEKK---PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD---PQKGQILIDGIDIRDISRKSL 75 (229)
T ss_pred eEEEEEEEEecCCCC---ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEeHHHcCHHHH
Confidence 378999999997421 27999999999999999999999999999999999999 99997 888876532 112
Q ss_pred hcCCCcccCcchh--hhHHHHHHccccccC--------------------------------CCCCCCCCCchhhhhhcc
Q 027060 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA--------------------------------PSFDHGVGDPVEDDILVG 198 (229)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~--------------------------------~~~~~~~~~~~~~~l~~~ 198 (229)
+..+.+.++...+ .++.+|+.+...... ..++.++.+++..+.++.
T Consensus 76 ~~~i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~ 155 (229)
T cd03254 76 RSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAML 155 (229)
T ss_pred hhhEEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHh
Confidence 2334444444322 588888876432110 112223334444444444
Q ss_pred CCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 199 ~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
.+++++++|+|+..||...+..+.+++..
T Consensus 156 ~~p~llllDEP~~~LD~~~~~~l~~~l~~ 184 (229)
T cd03254 156 RDPKILILDEATSNIDTETEKLIQEALEK 184 (229)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 45555555555555555567777777654
No 107
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.87 E-value=1.3e-22 Score=168.00 Aligned_cols=143 Identities=17% Similarity=0.159 Sum_probs=93.7
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH--Hhhc
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA--HARR 154 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~--~~~~ 154 (229)
|+++|+++.|++.. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++|. .++|.++... ..+.
T Consensus 1 l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (198)
T TIGR01189 1 LAARNLACSRGERM----LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR---PDSGEVRWNGTALAEQRDEPHR 73 (198)
T ss_pred CEEEEEEEEECCEE----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccchHHhhh
Confidence 47899999998754 8999999999999999999999999999999999999 99997 8888754221 1122
Q ss_pred CCCcccCc---chhhhHHHHHHccccccCC-----------------------CCCCCCCCchhhhhhccCCccEEEecC
Q 027060 155 GAPWTFNP---LLLLNCLKNLRNQGSVYAP-----------------------SFDHGVGDPVEDDILVGLQHKVVIVDG 208 (229)
Q Consensus 155 ~~~~~~~~---~~~~tv~e~l~~~~~~~~~-----------------------~~~~~~~~~~~~~l~~~~~~rvLi~d~ 208 (229)
.+.+.++. +..+|+.+|+.+....... .++.++.+++..+.++..+++++++|+
T Consensus 74 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 153 (198)
T TIGR01189 74 NILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDE 153 (198)
T ss_pred heEEeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 33333333 2237888888754221110 111233333333344444445555555
Q ss_pred CeeeecccCHHHHHHHHhh
Q 027060 209 NYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 209 ~~LlLDEP~~~~l~~~l~~ 227 (229)
|+..||...+..+.+++..
T Consensus 154 Pt~~LD~~~~~~l~~~l~~ 172 (198)
T TIGR01189 154 PTTALDKAGVALLAGLLRA 172 (198)
T ss_pred CCcCCCHHHHHHHHHHHHH
Confidence 5555555557777766653
No 108
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.8e-22 Score=175.68 Aligned_cols=147 Identities=16% Similarity=0.178 Sum_probs=100.0
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---H
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---A 150 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~ 150 (229)
|.+|+++|+++.|++.. .+|+++||+|.+||+++|+|+||||||||+++|+|+++ |++|. .++|+++.. .
T Consensus 1 ~~~l~~~~l~~~~~~~~---~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~ 74 (277)
T PRK13652 1 MHLIETRDLCYSYSGSK---EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK---PTSGSVLIRGEPITKENIR 74 (277)
T ss_pred CceEEEEEEEEEeCCCC---ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCHH
Confidence 46799999999996421 27999999999999999999999999999999999999 99997 888875421 1
Q ss_pred HhhcCCCcccCcc----hhhhHHHHHHcccccc---------------------------CCCCCCCCCCchhhhhhccC
Q 027060 151 HARRGAPWTFNPL----LLLNCLKNLRNQGSVY---------------------------APSFDHGVGDPVEDDILVGL 199 (229)
Q Consensus 151 ~~~~~~~~~~~~~----~~~tv~e~l~~~~~~~---------------------------~~~~~~~~~~~~~~~l~~~~ 199 (229)
..+..+.+.+|.+ ...|+.+|+.++.... ...++.++.+++..+.++..
T Consensus 75 ~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~ 154 (277)
T PRK13652 75 EVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAM 154 (277)
T ss_pred HHHhheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 1222344444432 2268899987532110 00122344444444555555
Q ss_pred CccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 200 ~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
++++|++|+|+..||...+..+.+++..
T Consensus 155 ~p~llilDEPt~gLD~~~~~~l~~~l~~ 182 (277)
T PRK13652 155 EPQVLVLDEPTAGLDPQGVKELIDFLND 182 (277)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 5666666666666666567788777754
No 109
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.4e-22 Score=176.13 Aligned_cols=144 Identities=17% Similarity=0.192 Sum_probs=101.2
Q ss_pred eEEEeeeeEEcCc-cccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----H
Q 027060 77 VVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----A 150 (229)
Q Consensus 77 ~i~~~~ls~~y~~-~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----~ 150 (229)
+|+++|+++.|++ .. +|+++||+|.+||+++|+|+||||||||+++|+|+++ |++|. .++|.++.. .
T Consensus 1 ml~~~~l~~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 73 (274)
T PRK13644 1 MIRLENVSYSYPDGTP----ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR---PQKGKVLVSGIDTGDFSKLQ 73 (274)
T ss_pred CEEEEEEEEEcCCCCc----eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEECCccccHH
Confidence 4889999999963 33 7999999999999999999999999999999999999 99997 888875421 1
Q ss_pred HhhcCCCcccCcc----hhhhHHHHHHcccccc---------------------------CCCCCCCCCCchhhhhhccC
Q 027060 151 HARRGAPWTFNPL----LLLNCLKNLRNQGSVY---------------------------APSFDHGVGDPVEDDILVGL 199 (229)
Q Consensus 151 ~~~~~~~~~~~~~----~~~tv~e~l~~~~~~~---------------------------~~~~~~~~~~~~~~~l~~~~ 199 (229)
..+..+.+.+|.+ ...++.+|+.++.... ...++.++.+++..+.++..
T Consensus 74 ~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~ 153 (274)
T PRK13644 74 GIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTM 153 (274)
T ss_pred HHHhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 2223344444442 2268999987643211 01123344555555555566
Q ss_pred CccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 200 ~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
++++|++|+|+..||...+..+.+++..
T Consensus 154 ~p~lllLDEPt~gLD~~~~~~l~~~l~~ 181 (274)
T PRK13644 154 EPECLIFDEVTSMLDPDSGIAVLERIKK 181 (274)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 6666666666666666677777777653
No 110
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=1.3e-22 Score=169.50 Aligned_cols=142 Identities=19% Similarity=0.202 Sum_probs=97.0
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH--HHhhc
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE--AHARR 154 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~--~~~~~ 154 (229)
|+++|+++.|++.. +++++||+|++| +++|+||||||||||+++|+|+++ |++|. .++|.++.. ...+.
T Consensus 1 i~~~~~~~~~~~~~----~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 72 (211)
T cd03264 1 LQLENLTKRYGKKR----ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP---PSSGTIRIDGQDVLKQPQKLRR 72 (211)
T ss_pred CEEEEEEEEECCEE----EEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCCccccchHHHHh
Confidence 47899999997654 899999999999 999999999999999999999999 99997 888876432 11122
Q ss_pred CCCcccCcc---hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCCccEE
Q 027060 155 GAPWTFNPL---LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQHKVV 204 (229)
Q Consensus 155 ~~~~~~~~~---~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~~rvL 204 (229)
.+.+.+|.. ..+++.+|+.+...... ..++.++.+++..+.++..+++++
T Consensus 73 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 152 (211)
T cd03264 73 RIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSIL 152 (211)
T ss_pred heEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 333444333 33688998875321110 012223344444444555555556
Q ss_pred EecCCeeeecccCHHHHHHHHhh
Q 027060 205 IVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 205 i~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
++|+|+..||...+..+.+++..
T Consensus 153 llDEPt~~LD~~~~~~l~~~l~~ 175 (211)
T cd03264 153 IVDEPTAGLDPEERIRFRNLLSE 175 (211)
T ss_pred EEcCCcccCCHHHHHHHHHHHHH
Confidence 66666666666667788777764
No 111
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.87 E-value=8.1e-23 Score=173.31 Aligned_cols=91 Identities=31% Similarity=0.401 Sum_probs=71.4
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----HHh
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----AHA 152 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----~~~ 152 (229)
|+++|+++.|++.. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++|. .++|.++.. ...
T Consensus 1 l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (236)
T cd03219 1 LEVRGLTKRFGGLV----ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR---PTSGSVLFDGEDITGLPPHEIA 73 (236)
T ss_pred CeeeeeEEEECCEE----EecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCceEEECCEECCCCCHHHHH
Confidence 46899999998654 8999999999999999999999999999999999999 99997 888875321 112
Q ss_pred hcCCCcccCcc---hhhhHHHHHHcc
Q 027060 153 RRGAPWTFNPL---LLLNCLKNLRNQ 175 (229)
Q Consensus 153 ~~~~~~~~~~~---~~~tv~e~l~~~ 175 (229)
+.++.+.+|.+ ..+|+.+|+.++
T Consensus 74 ~~~i~~v~q~~~l~~~~tv~~~l~~~ 99 (236)
T cd03219 74 RLGIGRTFQIPRLFPELTVLENVMVA 99 (236)
T ss_pred hcCEEEEecccccccCCCHHHHHHHH
Confidence 23344444443 337899998764
No 112
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=2.1e-22 Score=171.58 Aligned_cols=144 Identities=19% Similarity=0.209 Sum_probs=98.1
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH-------
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK------- 148 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~------- 148 (229)
+|+++|+++.|++.. +|+++||+|.+||+++|+||||||||||+++|+|+++ |++|. .++|.++.
T Consensus 2 ~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 74 (242)
T PRK11124 2 SIQLNGINCFYGAHQ----ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM---PRSGTLNIAGNHFDFSKTPSD 74 (242)
T ss_pred EEEEEeeEEEECCee----eEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEecccccccch
Confidence 589999999998654 8999999999999999999999999999999999999 99997 88887531
Q ss_pred --HHHhhcCCCcccCcch---hhhHHHHHHccc-ccc---------------------------CCCCCCCCCCchhhhh
Q 027060 149 --EAHARRGAPWTFNPLL---LLNCLKNLRNQG-SVY---------------------------APSFDHGVGDPVEDDI 195 (229)
Q Consensus 149 --~~~~~~~~~~~~~~~~---~~tv~e~l~~~~-~~~---------------------------~~~~~~~~~~~~~~~l 195 (229)
....+.++.+.+|... .+|+.+|+.+.. ... ...++.++.+++..+.
T Consensus 75 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lar 154 (242)
T PRK11124 75 KAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIAR 154 (242)
T ss_pred hhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHH
Confidence 1122234444444432 368899886311 000 0012223344444444
Q ss_pred hccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 196 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 196 ~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
++..+++++++|+|+..||...+..+.+++..
T Consensus 155 al~~~p~llilDEPt~~LD~~~~~~l~~~l~~ 186 (242)
T PRK11124 155 ALMMEPQVLLFDEPTAALDPEITAQIVSIIRE 186 (242)
T ss_pred HHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHH
Confidence 45555555666666666666567777777653
No 113
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.87 E-value=8.2e-23 Score=167.06 Aligned_cols=135 Identities=23% Similarity=0.275 Sum_probs=106.7
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecC-CCH----HH
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS-QDP----KE 149 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g-~~~----~~ 149 (229)
++++++||+.+|++.. +|+++||+|.+||.-+|||||||||||++.+|+|..+ |+.|. +++| .++ ..
T Consensus 4 ~iL~~~~vsVsF~GF~----Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtr---p~~G~v~f~g~~dl~~~~e~ 76 (249)
T COG4674 4 IILYLDGVSVSFGGFK----ALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR---PQEGEVLFDGDTDLTKLPEH 76 (249)
T ss_pred ceEEEeceEEEEccee----eeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCC---CCcceEEEcCchhhccCCHH
Confidence 5799999999999987 9999999999999999999999999999999999999 99998 7777 342 33
Q ss_pred HHhhcCCCcccCcch---hhhHHHHHHccccccCCCCC-----------------------CCCCCchhhhhhccCCccE
Q 027060 150 AHARRGAPWTFNPLL---LLNCLKNLRNQGSVYAPSFD-----------------------HGVGDPVEDDILVGLQHKV 203 (229)
Q Consensus 150 ~~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~rv 203 (229)
...+.|++..||.+. .+||+|||.+........|. ....++.+..++-|+++.+
T Consensus 77 ~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwL 156 (249)
T COG4674 77 RIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWL 156 (249)
T ss_pred HHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhh
Confidence 456788888887765 38999999987655443332 1123444455555666655
Q ss_pred -----EEecCCeeeecccC
Q 027060 204 -----VIVDGNYLFLDGGV 217 (229)
Q Consensus 204 -----Li~d~~~LlLDEP~ 217 (229)
++.||.+|+||||.
T Consensus 157 EIGMll~Q~P~lLLlDEPv 175 (249)
T COG4674 157 EIGMLLAQDPKLLLLDEPV 175 (249)
T ss_pred hhheeeccCCcEEEecCcc
Confidence 88899999999994
No 114
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=2.1e-22 Score=176.25 Aligned_cols=96 Identities=18% Similarity=0.243 Sum_probs=73.5
Q ss_pred eEEEeeeeEEcCcccc-ccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----
Q 027060 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----- 149 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~-~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----- 149 (229)
.|+++||++.|++... ...+|++|||+|.+||++||+|+||||||||+++|+|+++ |++|. .++|.++..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK---PTSGKIIIDGVDITDKKVKL 78 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCccEEEECCEECCCcCccH
Confidence 4899999999975211 1238999999999999999999999999999999999999 99997 888876421
Q ss_pred HHhhcCCCcccCcc----hhhhHHHHHHcc
Q 027060 150 AHARRGAPWTFNPL----LLLNCLKNLRNQ 175 (229)
Q Consensus 150 ~~~~~~~~~~~~~~----~~~tv~e~l~~~ 175 (229)
...+..+++.+|.+ ...|+.+|+.++
T Consensus 79 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~ 108 (287)
T PRK13637 79 SDIRKKVGLVFQYPEYQLFEETIEKDIAFG 108 (287)
T ss_pred HHHhhceEEEecCchhccccccHHHHHHhH
Confidence 12223344555543 126899999764
No 115
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.7e-22 Score=175.22 Aligned_cols=144 Identities=17% Similarity=0.169 Sum_probs=96.6
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH-----HH
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK-----EA 150 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~-----~~ 150 (229)
||+++||++.|++.. +|+++||+|.+|++++|+|+||||||||+++|+|+++ |++|. .++|+++. ..
T Consensus 1 ml~~~~l~~~~~~~~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~~ 73 (271)
T PRK13638 1 MLATSDLWFRYQDEP----VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR---PQKGAVLWQGKPLDYSKRGLL 73 (271)
T ss_pred CeEEEEEEEEcCCcc----cccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCccEEEECCEEcccccCCHH
Confidence 489999999998654 8999999999999999999999999999999999999 99997 88887642 11
Q ss_pred HhhcCCCcccCcch----hhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccC
Q 027060 151 HARRGAPWTFNPLL----LLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGL 199 (229)
Q Consensus 151 ~~~~~~~~~~~~~~----~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~ 199 (229)
..+..+.+.+|... ..++.+|+.++..... ..++.++.+++..+.++..
T Consensus 74 ~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~ 153 (271)
T PRK13638 74 ALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVL 153 (271)
T ss_pred HHHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHc
Confidence 12233444444432 2457777765311100 0122334444444444455
Q ss_pred CccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 200 ~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
++++|++|+|+..||...+..+.+++..
T Consensus 154 ~p~lllLDEPt~~LD~~~~~~l~~~l~~ 181 (271)
T PRK13638 154 QARYLLLDEPTAGLDPAGRTQMIAIIRR 181 (271)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 5555555555555555567777777654
No 116
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=2.9e-22 Score=171.73 Aligned_cols=147 Identities=15% Similarity=0.168 Sum_probs=98.7
Q ss_pred CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC-----CCce-EecCCCH
Q 027060 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQDP 147 (229)
Q Consensus 74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p-----~~G~-~~~g~~~ 147 (229)
+.++|+++|+++.|++.. +|+++||+|.+||+++|+|+||||||||+++|+|+++ | ++|. .++|.++
T Consensus 1 ~~~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~~~~~~G~i~~~g~~i 73 (251)
T PRK14270 1 MKIKMESKNLNLWYGEKQ----ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMND---LISNVKIEGEVLLDGKNI 73 (251)
T ss_pred CccEEEEEEeEEEECCee----eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccC---cccCCCCccEEEECCEec
Confidence 346899999999998654 8999999999999999999999999999999999987 5 6897 8888764
Q ss_pred HH-----HHhhcCCCcccCcch--hhhHHHHHHccccccC--------------------------------CCCCCCCC
Q 027060 148 KE-----AHARRGAPWTFNPLL--LLNCLKNLRNQGSVYA--------------------------------PSFDHGVG 188 (229)
Q Consensus 148 ~~-----~~~~~~~~~~~~~~~--~~tv~e~l~~~~~~~~--------------------------------~~~~~~~~ 188 (229)
.. ...+..+.+.+|... ..|+.+|+.+...... ..++.++.
T Consensus 74 ~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~ 153 (251)
T PRK14270 74 YDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQ 153 (251)
T ss_pred ccccccHHHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHH
Confidence 21 112233444443322 2788898876422110 01112233
Q ss_pred CchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 189 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 189 ~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+++..+.++..+++++++|+++..||...+..+.+++..
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~ 192 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVE 192 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 344444444455566666666666666667777777654
No 117
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=2.4e-22 Score=176.06 Aligned_cols=147 Identities=15% Similarity=0.139 Sum_probs=97.0
Q ss_pred eEEEeeeeEEcCcccc-ccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH------
Q 027060 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK------ 148 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~-~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~------ 148 (229)
.|+++||++.|++... ...+|+|+||+|.+||+++|+|+||||||||+++|+|+++ |++|. .++|+++.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 78 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ---PTSGTVTIGERVITAGKKNK 78 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 4899999999975211 1238999999999999999999999999999999999999 99997 88887542
Q ss_pred -HHHhhcCCCcccCcc----hhhhHHHHHHccccccC----------------------------CCCCCCCCCchhhhh
Q 027060 149 -EAHARRGAPWTFNPL----LLLNCLKNLRNQGSVYA----------------------------PSFDHGVGDPVEDDI 195 (229)
Q Consensus 149 -~~~~~~~~~~~~~~~----~~~tv~e~l~~~~~~~~----------------------------~~~~~~~~~~~~~~l 195 (229)
....+..+++.+|.+ ...|+.+|+.++..... ..++.++.+++..+.
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAr 158 (290)
T PRK13634 79 KLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAG 158 (290)
T ss_pred hHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHH
Confidence 112233445555542 12699999976522110 011123333444444
Q ss_pred hccCCccEEEecCCeeeecccCHHHHHHHHh
Q 027060 196 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 226 (229)
Q Consensus 196 ~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~ 226 (229)
++..++++|++|+++..||......+.+++.
T Consensus 159 aL~~~P~llllDEPt~~LD~~~~~~l~~~L~ 189 (290)
T PRK13634 159 VLAMEPEVLVLDEPTAGLDPKGRKEMMEMFY 189 (290)
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 4444555555555555555556777776664
No 118
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.87 E-value=2.4e-22 Score=172.99 Aligned_cols=145 Identities=15% Similarity=0.216 Sum_probs=96.3
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC-----CCce-EecCCCHH-
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQDPK- 148 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p-----~~G~-~~~g~~~~- 148 (229)
.+|+++|+++.|++.. +|+++||+|++||+++|+|+||||||||+++|+|+++ | ++|. .++|.++.
T Consensus 3 ~~l~i~~v~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~---~~~~~~~~G~I~~~g~~~~~ 75 (258)
T PRK14241 3 KRIDVKDLNIYYGSFH----AVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHE---VIPGARVEGEVLLDGEDLYG 75 (258)
T ss_pred ccEEEeeEEEEECCEe----eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCC---cccCCCcceEEEECCEeccc
Confidence 4699999999998754 8999999999999999999999999999999999987 5 6897 88887542
Q ss_pred ----HHHhhcCCCcccCcc---hhhhHHHHHHccccccC--------------------------------CCCCCCCCC
Q 027060 149 ----EAHARRGAPWTFNPL---LLLNCLKNLRNQGSVYA--------------------------------PSFDHGVGD 189 (229)
Q Consensus 149 ----~~~~~~~~~~~~~~~---~~~tv~e~l~~~~~~~~--------------------------------~~~~~~~~~ 189 (229)
....+..+.+.++.. ..+|+.+|+.++..... ..++.++.+
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 155 (258)
T PRK14241 76 PGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQ 155 (258)
T ss_pred cccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHH
Confidence 112233444444443 23688888875421110 001122233
Q ss_pred chhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 190 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 190 ~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
++..+.++..+++++++|+|+..||......+.+++..
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 193 (258)
T PRK14241 156 RLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINE 193 (258)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 33334444445555555555555555567777777654
No 119
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=2.3e-22 Score=175.96 Aligned_cols=96 Identities=17% Similarity=0.224 Sum_probs=73.5
Q ss_pred eEEEeeeeEEcCcccc-ccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----
Q 027060 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----- 149 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~-~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----- 149 (229)
+|+++|+++.|++... ...+|+|+||+|.+||+++|+||||||||||+++|+|+++ |++|. .++|+++..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK---PSSGTITIAGYHITPETGNK 78 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 6899999999974210 1137999999999999999999999999999999999999 99997 888875421
Q ss_pred --HHhhcCCCcccCcc----hhhhHHHHHHcc
Q 027060 150 --AHARRGAPWTFNPL----LLLNCLKNLRNQ 175 (229)
Q Consensus 150 --~~~~~~~~~~~~~~----~~~tv~e~l~~~ 175 (229)
...+.++++.+|.+ ..+++.+|+.++
T Consensus 79 ~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~ 110 (287)
T PRK13641 79 NLKKLRKKVSLVFQFPEAQLFENTVLKDVEFG 110 (287)
T ss_pred hHHHHHhceEEEEeChhhhhccchHHHHHHHH
Confidence 12233455555543 126899998754
No 120
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.87 E-value=2.2e-22 Score=172.08 Aligned_cols=92 Identities=22% Similarity=0.323 Sum_probs=72.2
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCC-----Cce-EecCCCHHH-
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KAS-SFDSQDPKE- 149 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~-----~G~-~~~g~~~~~- 149 (229)
+|+++||++.|++.. +++|+||+|++||+++|+|+||||||||+++|+|+++ |+ +|. .++|+++..
T Consensus 1 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~~~~~~G~i~~~g~~~~~~ 73 (247)
T TIGR00972 1 AIEIENLNLFYGEKE----ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND---LVPGVRIEGKVLFDGQDIYDK 73 (247)
T ss_pred CEEEEEEEEEECCee----eecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC---CCcCCCCceEEEECCEEcccc
Confidence 478999999998654 8999999999999999999999999999999999999 88 997 888876431
Q ss_pred ----HHhhcCCCcccCcchh--hhHHHHHHcc
Q 027060 150 ----AHARRGAPWTFNPLLL--LNCLKNLRNQ 175 (229)
Q Consensus 150 ----~~~~~~~~~~~~~~~~--~tv~e~l~~~ 175 (229)
...+..+.+.+|...+ .++.+|+.+.
T Consensus 74 ~~~~~~~~~~i~~v~q~~~~~~~tv~e~l~~~ 105 (247)
T TIGR00972 74 KIDVVELRRRVGMVFQKPNPFPMSIYDNIAYG 105 (247)
T ss_pred ccchHHHHhheEEEecCcccCCCCHHHHHHhH
Confidence 1222334444443221 7888998764
No 121
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=2.4e-22 Score=175.51 Aligned_cols=145 Identities=16% Similarity=0.198 Sum_probs=100.5
Q ss_pred CeEEEeeeeEEcC-ccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH-----
Q 027060 76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK----- 148 (229)
Q Consensus 76 ~~i~~~~ls~~y~-~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~----- 148 (229)
++|+++|+++.|+ +.. +|+++||+|.+||+++|+|+||||||||+++|+|+++ |++|. .++|.++.
T Consensus 4 ~~l~~~~l~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~---p~~G~i~i~g~~~~~~~~~ 76 (283)
T PRK13636 4 YILKVEELNYNYSDGTH----ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK---PSSGRILFDGKPIDYSRKG 76 (283)
T ss_pred ceEEEEeEEEEeCCCCe----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCccEEEECCEECCCCcch
Confidence 4799999999996 333 8999999999999999999999999999999999999 99997 88887642
Q ss_pred HHHhhcCCCcccCcc----hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhc
Q 027060 149 EAHARRGAPWTFNPL----LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILV 197 (229)
Q Consensus 149 ~~~~~~~~~~~~~~~----~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~ 197 (229)
....+..+++.+|.+ ...|+.+|+.++..... ..++.++.+++..+.++
T Consensus 77 ~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL 156 (283)
T PRK13636 77 LMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVL 156 (283)
T ss_pred HHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 112223344555443 22689999976421110 01223444455555555
Q ss_pred cCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 198 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 198 ~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
..++++|++|+++..||...+..+.+++..
T Consensus 157 ~~~p~lLilDEPt~gLD~~~~~~l~~~l~~ 186 (283)
T PRK13636 157 VMEPKVLVLDEPTAGLDPMGVSEIMKLLVE 186 (283)
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 555666666666666666667777776653
No 122
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=3.5e-22 Score=169.21 Aligned_cols=145 Identities=18% Similarity=0.174 Sum_probs=97.4
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHhh
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHAR 153 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~~ 153 (229)
|+++|+++.|++.. ..+++++||++++|++++|+||||||||||+++|+|+++ |++|. .++|+++.. ...+
T Consensus 1 i~~~~l~~~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~ 75 (234)
T cd03251 1 VEFKNVTFRYPGDG--PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD---VDSGRILIDGHDVRDYTLASLR 75 (234)
T ss_pred CEEEEEEEEeCCCC--ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc---CCCCEEEECCEEhhhCCHHHHH
Confidence 47899999997641 127899999999999999999999999999999999999 99997 888875432 1122
Q ss_pred cCCCcccCcch--hhhHHHHHHccccccC--------------------------------CCCCCCCCCchhhhhhccC
Q 027060 154 RGAPWTFNPLL--LLNCLKNLRNQGSVYA--------------------------------PSFDHGVGDPVEDDILVGL 199 (229)
Q Consensus 154 ~~~~~~~~~~~--~~tv~e~l~~~~~~~~--------------------------------~~~~~~~~~~~~~~l~~~~ 199 (229)
..+.+.++... ..++.+|+.+...... ..++.++.+++..+.++..
T Consensus 76 ~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 155 (234)
T cd03251 76 RQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLK 155 (234)
T ss_pred hhEEEeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhc
Confidence 23444443322 2689999976432100 0122233444444444555
Q ss_pred CccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 200 ~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+++++++|+|+..||...+..+.+++..
T Consensus 156 ~p~lllLDEP~~~LD~~~~~~l~~~l~~ 183 (234)
T cd03251 156 DPPILILDEATSALDTESERLVQAALER 183 (234)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 5566666666666666667777777654
No 123
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=3.7e-22 Score=171.34 Aligned_cols=94 Identities=18% Similarity=0.302 Sum_probs=73.6
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC-----CCce-EecCCCHH
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQDPK 148 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p-----~~G~-~~~g~~~~ 148 (229)
.++|+++|+++.|++.. +|+++||+|.+||+++|+|+||||||||+++|+|+++ | ++|. .++|+++.
T Consensus 5 ~~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~i~~~g~~i~ 77 (254)
T PRK14273 5 EAIIETENLNLFYTDFK----ALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMND---LVEGIKIEGNVIYEGKNIY 77 (254)
T ss_pred CceEEEeeeEEEeCCce----eecceeeEEcCCCEEEEECCCCCCHHHHHHHHhcccc---CCcCCCCceEEEECCEecc
Confidence 45799999999998654 8999999999999999999999999999999999998 7 4786 88887542
Q ss_pred H-----HHhhcCCCcccCcch--hhhHHHHHHcc
Q 027060 149 E-----AHARRGAPWTFNPLL--LLNCLKNLRNQ 175 (229)
Q Consensus 149 ~-----~~~~~~~~~~~~~~~--~~tv~e~l~~~ 175 (229)
. ...+.++.+.+|... ..|+.+|+.++
T Consensus 78 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~ 111 (254)
T PRK14273 78 SNNFDILELRRKIGMVFQTPNPFLMSIYDNISYG 111 (254)
T ss_pred cccccHHHHhhceEEEeeccccccCcHHHHHHHH
Confidence 1 122334545454432 27999999765
No 124
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=3.4e-22 Score=171.74 Aligned_cols=144 Identities=17% Similarity=0.184 Sum_probs=98.6
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA 152 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~ 152 (229)
+|+++|++++|++.. +|+++||+|++|++++|+|+||||||||+++|+|+++ |++|. .++|.++.. ...
T Consensus 2 ~l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 74 (255)
T PRK11231 2 TLRTENLTVGYGTKR----ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT---PQSGTVFLGDKPISMLSSRQL 74 (255)
T ss_pred EEEEEeEEEEECCEE----EEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCCcEEEECCEEhHHCCHHHH
Confidence 589999999998754 8999999999999999999999999999999999999 99997 888876432 111
Q ss_pred hcCCCcccCcc---hhhhHHHHHHccccc----cC---------------------------CCCCCCCCCchhhhhhcc
Q 027060 153 RRGAPWTFNPL---LLLNCLKNLRNQGSV----YA---------------------------PSFDHGVGDPVEDDILVG 198 (229)
Q Consensus 153 ~~~~~~~~~~~---~~~tv~e~l~~~~~~----~~---------------------------~~~~~~~~~~~~~~l~~~ 198 (229)
+..+.+.+|.. ..+++.+|+.++... .. ..++.++.+++..+.++.
T Consensus 75 ~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~ 154 (255)
T PRK11231 75 ARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLA 154 (255)
T ss_pred hhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHh
Confidence 22344444432 236888998764210 00 011223344444444455
Q ss_pred CCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 199 ~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
.+++++++|+|+..||...+..+.+++..
T Consensus 155 ~~p~llllDEP~~~LD~~~~~~l~~~l~~ 183 (255)
T PRK11231 155 QDTPVVLLDEPTTYLDINHQVELMRLMRE 183 (255)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 55555666666666666567777777653
No 125
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=2.4e-22 Score=175.90 Aligned_cols=97 Identities=15% Similarity=0.138 Sum_probs=73.8
Q ss_pred eEEEeeeeEEcCcccc-ccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH------
Q 027060 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK------ 148 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~-~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~------ 148 (229)
||+++|+++.|+.... ...+|+|+||+|.+||+++|+|+||||||||+++|+|+++ |++|. .++|.++.
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 77 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ---PTEGKVTVGDIVVSSTSKQK 77 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 4899999999974311 1137999999999999999999999999999999999999 99997 88887542
Q ss_pred -HHHhhcCCCcccCcc--h--hhhHHHHHHccc
Q 027060 149 -EAHARRGAPWTFNPL--L--LLNCLKNLRNQG 176 (229)
Q Consensus 149 -~~~~~~~~~~~~~~~--~--~~tv~e~l~~~~ 176 (229)
....+..+++.||.+ . ..++.+|+.++.
T Consensus 78 ~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~ 110 (288)
T PRK13643 78 EIKPVRKKVGVVFQFPESQLFEETVLKDVAFGP 110 (288)
T ss_pred cHHHHHhhEEEEecCcchhcccchHHHHHHhHH
Confidence 112233445555543 1 268999998753
No 126
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=2.5e-22 Score=172.30 Aligned_cols=93 Identities=24% Similarity=0.330 Sum_probs=74.3
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----H
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----A 150 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----~ 150 (229)
++|+++|+++.|++.. +|+++||+|.+|++++|+|+||||||||+++|+|+++ |++|. .++|.++.. .
T Consensus 4 ~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 76 (255)
T PRK11300 4 PLLSVSGLMMRFGGLL----AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK---PTGGTILLRGQHIEGLPGHQ 76 (255)
T ss_pred ceEEEeeEEEEECCEE----EEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC---CCcceEEECCEECCCCCHHH
Confidence 4799999999998654 8999999999999999999999999999999999999 99997 888875421 1
Q ss_pred HhhcCCCcccCcc---hhhhHHHHHHcc
Q 027060 151 HARRGAPWTFNPL---LLLNCLKNLRNQ 175 (229)
Q Consensus 151 ~~~~~~~~~~~~~---~~~tv~e~l~~~ 175 (229)
..+.++.+.+|.. ..+|+.+|+.++
T Consensus 77 ~~~~~i~~~~q~~~~~~~~tv~enl~~~ 104 (255)
T PRK11300 77 IARMGVVRTFQHVRLFREMTVIENLLVA 104 (255)
T ss_pred HHhcCeEEeccCcccCCCCcHHHHHHHh
Confidence 2233444444443 337999998864
No 127
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=3.3e-22 Score=176.52 Aligned_cols=67 Identities=13% Similarity=0.334 Sum_probs=57.9
Q ss_pred eEEEeeeeEEcCcccc-ccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCC
Q 027060 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQD 146 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~-~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~ 146 (229)
+|+++||++.|++... ...+|+++||+|.+||+++|+|+||||||||+++|+|+++ |++|. .++|.+
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~---p~~G~i~~~g~~ 70 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL---PDTGTIEWIFKD 70 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEEecee
Confidence 5899999999975311 1237999999999999999999999999999999999999 99997 777653
No 128
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.87 E-value=3.5e-22 Score=172.20 Aligned_cols=92 Identities=17% Similarity=0.237 Sum_probs=72.6
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA 152 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~ 152 (229)
+|+++|+++.|++.. +|+++||+|.+|++++|+|+||||||||+++|+|+++ |++|. .++|.++.. ...
T Consensus 2 ~l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---p~~G~i~~~g~~~~~~~~~~~ 74 (258)
T PRK13548 2 MLEARNLSVRLGGRT----LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS---PDSGEVRLNGRPLADWSPAEL 74 (258)
T ss_pred eEEEEeEEEEeCCee----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEEcccCCHHHh
Confidence 589999999998754 8999999999999999999999999999999999999 99997 888865321 111
Q ss_pred hcCCCcccCcc---hhhhHHHHHHcc
Q 027060 153 RRGAPWTFNPL---LLLNCLKNLRNQ 175 (229)
Q Consensus 153 ~~~~~~~~~~~---~~~tv~e~l~~~ 175 (229)
+..+.+.+|.. ..+|+.+|+.++
T Consensus 75 ~~~i~~~~q~~~~~~~~tv~e~l~~~ 100 (258)
T PRK13548 75 ARRRAVLPQHSSLSFPFTVEEVVAMG 100 (258)
T ss_pred hhheEEEccCCcCCCCCCHHHHHHhh
Confidence 22333444433 337899998764
No 129
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.87 E-value=2.6e-22 Score=188.31 Aligned_cols=147 Identities=17% Similarity=0.125 Sum_probs=101.0
Q ss_pred CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH----
Q 027060 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK---- 148 (229)
Q Consensus 74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~---- 148 (229)
+.++|+++|+++.|++.. +|+++||+|++|++++|+||||||||||+++|+|+++ |++|. .++|.++.
T Consensus 8 ~~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~ 80 (510)
T PRK15439 8 APPLLCARSISKQYSGVE----VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP---PDSGTLEIGGNPCARLTP 80 (510)
T ss_pred CCceEEEEeEEEEeCCce----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCCCCH
Confidence 556899999999998754 8999999999999999999999999999999999999 99997 78886532
Q ss_pred HHHhhcCCCcccCcc---hhhhHHHHHHccccccC-----------------------CCCCCCCCCchhhhhhccCCcc
Q 027060 149 EAHARRGAPWTFNPL---LLLNCLKNLRNQGSVYA-----------------------PSFDHGVGDPVEDDILVGLQHK 202 (229)
Q Consensus 149 ~~~~~~~~~~~~~~~---~~~tv~e~l~~~~~~~~-----------------------~~~~~~~~~~~~~~l~~~~~~r 202 (229)
....+.++++.+|.. ..+++.+|+.++..... ..++.++.+++..+.++...++
T Consensus 81 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~ 160 (510)
T PRK15439 81 AKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSR 160 (510)
T ss_pred HHHHhCCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 112223444445443 33799999887532110 0122334444444444444555
Q ss_pred EEEecCCeeeecccCHHHHHHHHhh
Q 027060 203 VVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 203 vLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+|++|||+..||......+.+++..
T Consensus 161 lllLDEPt~~LD~~~~~~l~~~l~~ 185 (510)
T PRK15439 161 ILILDEPTASLTPAETERLFSRIRE 185 (510)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHH
Confidence 5555555555555567777776653
No 130
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.87 E-value=3.7e-22 Score=171.12 Aligned_cols=97 Identities=21% Similarity=0.278 Sum_probs=72.0
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhccc--CCCCce-EecCCCHHH--
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQDPKE-- 149 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~--~p~~G~-~~~g~~~~~-- 149 (229)
.++|+++||++.|++.. +|+++||+|.+||+++|+|+||||||||+++|+|++... .|++|. .++|+++..
T Consensus 4 ~~~l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 79 (253)
T PRK14242 4 PPKMEARGLSFFYGDFQ----ALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPH 79 (253)
T ss_pred CcEEEEeeeEEEECCee----eecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccc
Confidence 36899999999998654 899999999999999999999999999999999986310 147897 888876421
Q ss_pred ---HHhhcCCCcccCcchh--hhHHHHHHcc
Q 027060 150 ---AHARRGAPWTFNPLLL--LNCLKNLRNQ 175 (229)
Q Consensus 150 ---~~~~~~~~~~~~~~~~--~tv~e~l~~~ 175 (229)
...+..+.+.+|...+ .|+.+|+.++
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~ 110 (253)
T PRK14242 80 VDVVELRRRVGMVFQKPNPFPKSIFENVAYG 110 (253)
T ss_pred cCHHHHhhcEEEEecCCCCCcCcHHHHHHHH
Confidence 1222334444443221 5888988764
No 131
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.87 E-value=4.5e-22 Score=171.61 Aligned_cols=146 Identities=18% Similarity=0.235 Sum_probs=97.8
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCC---Cce-EecCCCHHH-
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KAS-SFDSQDPKE- 149 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~---~G~-~~~g~~~~~- 149 (229)
.++|+++||++.|++.. +|+++||+|.+||+++|+|+||||||||+++|+|+++ |+ +|. .++|.++..
T Consensus 2 ~~~l~~~nl~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---p~~~~~G~i~~~g~~~~~~ 74 (262)
T PRK09984 2 QTIIRVEKLAKTFNQHQ----ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLIT---GDKSAGSHIELLGRTVQRE 74 (262)
T ss_pred CcEEEEeeEEEEeCCeE----EEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCC---CCCCCceEEEECCEecccc
Confidence 45899999999998654 8999999999999999999999999999999999998 76 486 888875421
Q ss_pred -------HHhhcCCCcccCcc---hhhhHHHHHHccccccC-----------------------------------CCCC
Q 027060 150 -------AHARRGAPWTFNPL---LLLNCLKNLRNQGSVYA-----------------------------------PSFD 184 (229)
Q Consensus 150 -------~~~~~~~~~~~~~~---~~~tv~e~l~~~~~~~~-----------------------------------~~~~ 184 (229)
...+..+.+.+|.. ..+|+.+|+.++..... ..++
T Consensus 75 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS 154 (262)
T PRK09984 75 GRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLS 154 (262)
T ss_pred cccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccC
Confidence 11223344444443 33799999976421000 0011
Q ss_pred CCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 185 ~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
.++.+++..+.++...+++|++|+|+-.||...++.+.+++..
T Consensus 155 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 197 (262)
T PRK09984 155 GGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRD 197 (262)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHH
Confidence 2333444444444445555555555555555567777777654
No 132
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.87 E-value=6.5e-22 Score=166.07 Aligned_cols=145 Identities=16% Similarity=0.172 Sum_probs=97.5
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHhh
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHAR 153 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~~ 153 (229)
|+++|+++.|++.. ..+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|. .++|.++.. ...+
T Consensus 3 l~~~~l~~~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 77 (220)
T cd03245 3 IEFRNVSFSYPNQE--IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK---PTSGSVLLDGTDIRQLDPADLR 77 (220)
T ss_pred EEEEEEEEEcCCCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCeEEECCEEhHHCCHHHHH
Confidence 78999999997521 127999999999999999999999999999999999999 99997 888876432 1112
Q ss_pred cCCCcccCcch--hhhHHHHHHccccccC--------------------------------CCCCCCCCCchhhhhhccC
Q 027060 154 RGAPWTFNPLL--LLNCLKNLRNQGSVYA--------------------------------PSFDHGVGDPVEDDILVGL 199 (229)
Q Consensus 154 ~~~~~~~~~~~--~~tv~e~l~~~~~~~~--------------------------------~~~~~~~~~~~~~~l~~~~ 199 (229)
..+.+.+|... ..++.+|+.+...... ..++.++.+++..+.++..
T Consensus 78 ~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~ 157 (220)
T cd03245 78 RNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLN 157 (220)
T ss_pred hhEEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhc
Confidence 23333343322 2588899876421110 0222333444444444555
Q ss_pred CccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 200 ~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
++++|++|+|+..||...+..+.+++..
T Consensus 158 ~p~llllDEPt~~LD~~~~~~l~~~l~~ 185 (220)
T cd03245 158 DPPILLLDEPTSAMDMNSEERLKERLRQ 185 (220)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 5556666666666666667777777754
No 133
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=4.2e-22 Score=172.24 Aligned_cols=146 Identities=17% Similarity=0.131 Sum_probs=99.4
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---H
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---A 150 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~ 150 (229)
.++|+++||++.|++.. +|+++||+|.+||+++|+|+||||||||+++|+|+++ |++|. .++|.++.. .
T Consensus 9 ~~~l~i~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~ 81 (265)
T PRK10575 9 DTTFALRNVSFRVPGRT----LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP---PSEGEILLDAQPLESWSSK 81 (265)
T ss_pred CceEEEeeEEEEECCEE----EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCEehhhCCHH
Confidence 35799999999998654 8999999999999999999999999999999999999 99997 888876422 1
Q ss_pred HhhcCCCcccCc---chhhhHHHHHHccccccC-------------------------------CCCCCCCCCchhhhhh
Q 027060 151 HARRGAPWTFNP---LLLLNCLKNLRNQGSVYA-------------------------------PSFDHGVGDPVEDDIL 196 (229)
Q Consensus 151 ~~~~~~~~~~~~---~~~~tv~e~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~l~ 196 (229)
..+..+.+.+|. ...+++.+|+.++..... ..++.++.+++..+.+
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lara 161 (265)
T PRK10575 82 AFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAML 161 (265)
T ss_pred HHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHH
Confidence 122334444443 233689999886421000 0112233344444444
Q ss_pred ccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 197 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 197 ~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+..++++|++|+|+..||...++.+.+++..
T Consensus 162 l~~~p~lllLDEPt~~LD~~~~~~~~~~l~~ 192 (265)
T PRK10575 162 VAQDSRCLLLDEPTSALDIAHQVDVLALVHR 192 (265)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 4455555555555555555567777776653
No 134
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=3.8e-22 Score=170.78 Aligned_cols=94 Identities=19% Similarity=0.311 Sum_probs=72.2
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC-----CCce-EecCCCHH
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQDPK 148 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p-----~~G~-~~~g~~~~ 148 (229)
+++|+++|+++.|++.. +|+++||+|++||+++|+|+||||||||+++|+|+++ | ++|. .++|.++.
T Consensus 1 ~~~l~~~~l~~~~~~~~----~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---~~~~~~~~G~i~i~g~~~~ 73 (250)
T PRK14262 1 EPIIEIENFSAYYGEKK----AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMND---HIPGFRVEGKIYFKGQDIY 73 (250)
T ss_pred CceEEEEeeEEEeCCce----eEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhcccc---CCCCCCcceEEEECCEEcc
Confidence 35799999999998654 7999999999999999999999999999999999987 5 7897 88887542
Q ss_pred H-----HHhhcCCCcccCcch--hhhHHHHHHcc
Q 027060 149 E-----AHARRGAPWTFNPLL--LLNCLKNLRNQ 175 (229)
Q Consensus 149 ~-----~~~~~~~~~~~~~~~--~~tv~e~l~~~ 175 (229)
. ...+..+.+.+|.+. ..++.+|+.++
T Consensus 74 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~ 107 (250)
T PRK14262 74 DPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFG 107 (250)
T ss_pred cchhhHHHhhhhEEEEecCCccCcccHHHHHHHH
Confidence 1 112233444444322 27888988764
No 135
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=3.4e-22 Score=163.72 Aligned_cols=133 Identities=18% Similarity=0.226 Sum_probs=103.1
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCH-----HHH
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDP-----KEA 150 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~-----~~~ 150 (229)
||+++||+|.|+.+. +++++|++|++|.+++|+|||||||||||.+++.+++ .++|. .++|.++ ...
T Consensus 1 MI~i~nv~K~y~~~~----vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~---~d~G~i~i~g~~~~~~~s~~L 73 (252)
T COG4604 1 MITIENVSKSYGTKV----VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK---KDSGEITIDGLELTSTPSKEL 73 (252)
T ss_pred CeeehhhhHhhCCEE----eeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc---ccCceEEEeeeecccCChHHH
Confidence 589999999999886 8999999999999999999999999999999999999 99997 8999864 223
Q ss_pred HhhcCCCcc-cCcchhhhHHHHHHccccccCCCCC-----------------CCCCCchhhhhhccCCccE-----EEec
Q 027060 151 HARRGAPWT-FNPLLLLNCLKNLRNQGSVYAPSFD-----------------HGVGDPVEDDILVGLQHKV-----VIVD 207 (229)
Q Consensus 151 ~~~~~~~~~-~~~~~~~tv~e~l~~~~~~~~~~~~-----------------~~~~~~~~~~l~~~~~~rv-----Li~d 207 (229)
.....+..+ .....-+||.+-+.||...+....- ....++...+++.|+++|. +..|
T Consensus 74 Ak~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQd 153 (252)
T COG4604 74 AKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQD 153 (252)
T ss_pred HHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeecc
Confidence 333333222 2222238999999998765432110 2345666677888887776 7779
Q ss_pred CCeeeeccc
Q 027060 208 GNYLFLDGG 216 (229)
Q Consensus 208 ~~~LlLDEP 216 (229)
-+|++||||
T Consensus 154 TdyvlLDEP 162 (252)
T COG4604 154 TDYVLLDEP 162 (252)
T ss_pred CcEEEecCc
Confidence 999999999
No 136
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.87 E-value=2.9e-22 Score=187.60 Aligned_cols=94 Identities=19% Similarity=0.232 Sum_probs=75.4
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----H
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----A 150 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----~ 150 (229)
++|+++|+++.|++.. +|+|+||+|.+|+++||+||||||||||+|+|+|+++ |++|. .++|.++.. .
T Consensus 3 ~~i~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~ 75 (501)
T PRK10762 3 ALLQLKGIDKAFPGVK----ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT---RDAGSILYLGKEVTFNGPKS 75 (501)
T ss_pred ceEEEeeeEEEeCCeE----EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHH
Confidence 5799999999998754 8999999999999999999999999999999999999 99997 888865421 1
Q ss_pred HhhcCCCcccCcc---hhhhHHHHHHccc
Q 027060 151 HARRGAPWTFNPL---LLLNCLKNLRNQG 176 (229)
Q Consensus 151 ~~~~~~~~~~~~~---~~~tv~e~l~~~~ 176 (229)
..+..+.+.+|.+ ..+|+.+|+.++.
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 104 (501)
T PRK10762 76 SQEAGIGIIHQELNLIPQLTIAENIFLGR 104 (501)
T ss_pred HHhCCEEEEEcchhccCCCcHHHHhhhcc
Confidence 1233455555543 3379999998753
No 137
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=4e-22 Score=174.36 Aligned_cols=148 Identities=11% Similarity=0.147 Sum_probs=97.7
Q ss_pred eEEEeeeeEEcCccc-cccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----
Q 027060 77 VVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----- 149 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~-~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----- 149 (229)
.|+++||++.|++.. ....+|+|+||+|.+||+++|+|+||||||||+++|+|+++ |++|. .++|.++..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~---p~~G~i~~~g~~i~~~~~~~ 78 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK---PTTGTVTVDDITITHKTKDK 78 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 489999999997421 11238999999999999999999999999999999999999 99997 888875421
Q ss_pred --HHhhcCCCcccCcc----hhhhHHHHHHccccccC----------------------------CCCCCCCCCchhhhh
Q 027060 150 --AHARRGAPWTFNPL----LLLNCLKNLRNQGSVYA----------------------------PSFDHGVGDPVEDDI 195 (229)
Q Consensus 150 --~~~~~~~~~~~~~~----~~~tv~e~l~~~~~~~~----------------------------~~~~~~~~~~~~~~l 195 (229)
...+..+++.||.+ ...|+.+|+.++..... ..++.++.+++..+.
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lar 158 (286)
T PRK13646 79 YIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVS 158 (286)
T ss_pred hHHHHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHH
Confidence 12233455555543 12589999986421100 001122333444444
Q ss_pred hccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 196 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 196 ~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
++..++++|++|+|+..||...+..+.+++..
T Consensus 159 aL~~~p~illlDEPt~~LD~~~~~~l~~~l~~ 190 (286)
T PRK13646 159 ILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKS 190 (286)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 44445555555555555555567777777653
No 138
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=4.8e-22 Score=172.14 Aligned_cols=95 Identities=18% Similarity=0.208 Sum_probs=73.6
Q ss_pred CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC-----CCce-EecCCCH
Q 027060 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQDP 147 (229)
Q Consensus 74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p-----~~G~-~~~g~~~ 147 (229)
..++|+++||++.|++.. +|+|+||+|++|++++|+|+||||||||+++|+|+++ | ++|. .++|+++
T Consensus 16 ~~~~l~~~nl~~~~~~~~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~I~~~g~~i 88 (267)
T PRK14235 16 TEIKMRARDVSVFYGEKQ----ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMND---TIDGCRVTGKITLDGEDI 88 (267)
T ss_pred CCceEEEEeEEEEECCEE----EEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc---cccCCCCceEEEECCEEC
Confidence 345799999999998654 8999999999999999999999999999999999987 5 7897 8888754
Q ss_pred HH-----HHhhcCCCcccCcchh--hhHHHHHHcc
Q 027060 148 KE-----AHARRGAPWTFNPLLL--LNCLKNLRNQ 175 (229)
Q Consensus 148 ~~-----~~~~~~~~~~~~~~~~--~tv~e~l~~~ 175 (229)
.. ...+..+.+.+|.+.+ .++.+|+.++
T Consensus 89 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~ 123 (267)
T PRK14235 89 YDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYG 123 (267)
T ss_pred cccccchHHHhhceEEEecCCCCCCCcHHHHHHHH
Confidence 21 1223344444444321 4889998764
No 139
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.86 E-value=6.8e-22 Score=167.86 Aligned_cols=93 Identities=19% Similarity=0.220 Sum_probs=71.2
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHhh
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHAR 153 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~~ 153 (229)
|+++|+++.|++.. ..+|+++||+|.+||+++|+|+||||||||+++|+|+++ |++|. .++|.++.. ...+
T Consensus 1 i~~~~l~~~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 75 (237)
T cd03252 1 ITFEHVRFRYKPDG--PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV---PENGRVLVDGHDLALADPAWLR 75 (237)
T ss_pred CEEEEEEEecCCCC--ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCeehHhcCHHHHh
Confidence 47899999997421 127899999999999999999999999999999999999 99997 888876532 1122
Q ss_pred cCCCcccCcch--hhhHHHHHHcc
Q 027060 154 RGAPWTFNPLL--LLNCLKNLRNQ 175 (229)
Q Consensus 154 ~~~~~~~~~~~--~~tv~e~l~~~ 175 (229)
..+.+.+|... ..|+.+|+.+.
T Consensus 76 ~~i~~~~q~~~~~~~tv~~nl~~~ 99 (237)
T cd03252 76 RQVGVVLQENVLFNRSIRDNIALA 99 (237)
T ss_pred hcEEEEcCCchhccchHHHHhhcc
Confidence 33444444432 26899998764
No 140
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.86 E-value=4e-22 Score=171.52 Aligned_cols=145 Identities=16% Similarity=0.203 Sum_probs=97.7
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----- 149 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----- 149 (229)
..|+++||++.|+++. +|+++||+|.+||+++|+|+||||||||+++|+|+++ |++|. .++|.++..
T Consensus 4 ~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~ 76 (257)
T PRK10619 4 NKLNVIDLHKRYGEHE----VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGSIVVNGQTINLVRDKD 76 (257)
T ss_pred ccEEEeeeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccccccc
Confidence 3699999999998754 8999999999999999999999999999999999999 99997 888865421
Q ss_pred -----------HHhhcCCCcccCcc---hhhhHHHHHHcccc-ccC----------------------------CCCCCC
Q 027060 150 -----------AHARRGAPWTFNPL---LLLNCLKNLRNQGS-VYA----------------------------PSFDHG 186 (229)
Q Consensus 150 -----------~~~~~~~~~~~~~~---~~~tv~e~l~~~~~-~~~----------------------------~~~~~~ 186 (229)
...+..+.+.+|.+ ..+++.+|+.++.. ... ..++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G 156 (257)
T PRK10619 77 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGG 156 (257)
T ss_pred cccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHH
Confidence 12233444444443 23689999865210 000 011122
Q ss_pred CCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 187 ~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+.+++..+.++..+++++++|+|+..||...++.+.+++..
T Consensus 157 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 197 (257)
T PRK10619 157 QQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQ 197 (257)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 33444444444455555555555555555567777776653
No 141
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=4.1e-22 Score=171.57 Aligned_cols=94 Identities=18% Similarity=0.272 Sum_probs=72.6
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC-----CCce-EecCCCHH
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQDPK 148 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p-----~~G~-~~~g~~~~ 148 (229)
+++|+++|+++.|++.. +|+|+||+|.+||++||+|+||||||||+++|+|+++ | ++|+ .++|+++.
T Consensus 10 ~~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---~~~~~~~~G~i~~~g~~i~ 82 (258)
T PRK14268 10 QPQIKVENLNLWYGEKQ----ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMND---LIKNCRIEGKVSIEGEDIY 82 (258)
T ss_pred ceeEEEeeeEEEeCCee----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---cccCCCcceEEEECCEEcc
Confidence 45799999999998654 8999999999999999999999999999999999987 5 7897 88887542
Q ss_pred H-----HHhhcCCCcccCcch--hhhHHHHHHcc
Q 027060 149 E-----AHARRGAPWTFNPLL--LLNCLKNLRNQ 175 (229)
Q Consensus 149 ~-----~~~~~~~~~~~~~~~--~~tv~e~l~~~ 175 (229)
. ...+..+.+.+|... ..|+.+|+.+.
T Consensus 83 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~ 116 (258)
T PRK14268 83 EPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYG 116 (258)
T ss_pred cccchHHHHhhhEEEEecCCccCcccHHHHHHHH
Confidence 1 122233444444322 27888988764
No 142
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.86 E-value=2.1e-22 Score=177.31 Aligned_cols=136 Identities=19% Similarity=0.250 Sum_probs=91.3
Q ss_pred EEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH----HHHhhcCC-Cc
Q 027060 85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK----EAHARRGA-PW 158 (229)
Q Consensus 85 ~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~----~~~~~~~~-~~ 158 (229)
|.|++.. +|+++||+|++||++||+||||||||||+|+|+|+++ |++|. .++|.++. ..+..+++ ++
T Consensus 1 k~y~~~~----~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~i~~~~q 73 (302)
T TIGR01188 1 KVYGDFK----AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR---PTSGTARVAGYDVVREPRKVRRSIGIVPQ 73 (302)
T ss_pred CeeCCee----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccCHHHHHhhcEEecC
Confidence 4576544 8999999999999999999999999999999999999 99997 88887542 12223443 33
Q ss_pred ccCcchhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCCccEEEecCCee
Q 027060 159 TFNPLLLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQHKVVIVDGNYL 211 (229)
Q Consensus 159 ~~~~~~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~L 211 (229)
.+..+..+|+.+|+.+....+. ..++.++.+++..+.++..++++|++|+|+.
T Consensus 74 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 74 YASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred CCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 3333344799999876432211 0122344444444455555555566666666
Q ss_pred eecccCHHHHHHHHhh
Q 027060 212 FLDGGVWKDVSSMFDE 227 (229)
Q Consensus 212 lLDEP~~~~l~~~l~~ 227 (229)
.||...++.+.+++..
T Consensus 154 gLD~~~~~~l~~~l~~ 169 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRA 169 (302)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6665567777777654
No 143
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=5.1e-22 Score=172.32 Aligned_cols=147 Identities=14% Similarity=0.184 Sum_probs=101.5
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HH
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AH 151 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~ 151 (229)
++|+++|+++.|++.. ..+|+++||+|.+||+++|+||||||||||+++|+|+++ |++|. .++|.++.. ..
T Consensus 6 ~~l~~~nl~~~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~i~~~~~~~ 80 (271)
T PRK13632 6 VMIKVENVSFSYPNSE--NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK---PQSGEIKIDGITISKENLKE 80 (271)
T ss_pred eEEEEEeEEEEcCCCC--ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEecCcCCHHH
Confidence 4799999999996311 127999999999999999999999999999999999999 99997 888876431 12
Q ss_pred hhcCCCcccCcc----hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCC
Q 027060 152 ARRGAPWTFNPL----LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQ 200 (229)
Q Consensus 152 ~~~~~~~~~~~~----~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~ 200 (229)
.+..+.+.+|.+ ..+|+.+|+.++..... ..++.++.+++..+.++..+
T Consensus 81 ~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 160 (271)
T PRK13632 81 IRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALN 160 (271)
T ss_pred HhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 233455555543 22699999876421100 01223344445555555556
Q ss_pred ccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 201 HKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 201 ~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+++|++|+++..||....+.+.+++..
T Consensus 161 p~lllLDEP~~gLD~~~~~~l~~~l~~ 187 (271)
T PRK13632 161 PEIIIFDESTSMLDPKGKREIKKIMVD 187 (271)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 666666666666666667777777653
No 144
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.86 E-value=5.7e-22 Score=163.93 Aligned_cols=142 Identities=14% Similarity=0.138 Sum_probs=93.6
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHH-hhc
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAH-ARR 154 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~-~~~ 154 (229)
+|+++|+++.|++.. ++ ++||+|++||+++|+|+||||||||+++|+|+++ |++|. .++|.++.... ...
T Consensus 1 ~l~~~~l~~~~~~~~----l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~ 72 (195)
T PRK13541 1 MLSLHQLQFNIEQKN----LF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ---PSSGNIYYKNCNINNIAKPYC 72 (195)
T ss_pred CeEEEEeeEEECCcE----EE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCcccChhhhhhE
Confidence 378999999997642 44 5999999999999999999999999999999999 99997 88887653321 122
Q ss_pred CC-CcccCcchhhhHHHHHHccccccC----------------------CCCCCCCCCchhhhhhccCCccEEEecCCee
Q 027060 155 GA-PWTFNPLLLLNCLKNLRNQGSVYA----------------------PSFDHGVGDPVEDDILVGLQHKVVIVDGNYL 211 (229)
Q Consensus 155 ~~-~~~~~~~~~~tv~e~l~~~~~~~~----------------------~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~L 211 (229)
++ ++.+......|+.+|+.+....+. ..++.++.+++....++..+++++++|+++.
T Consensus 73 ~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~ 152 (195)
T PRK13541 73 TYIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVET 152 (195)
T ss_pred EeccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 22 332222334788888876432110 0112233334444444444555555555555
Q ss_pred eecccCHHHHHHHHh
Q 027060 212 FLDGGVWKDVSSMFD 226 (229)
Q Consensus 212 lLDEP~~~~l~~~l~ 226 (229)
.||......+.+++.
T Consensus 153 ~LD~~~~~~l~~~l~ 167 (195)
T PRK13541 153 NLSKENRDLLNNLIV 167 (195)
T ss_pred cCCHHHHHHHHHHHH
Confidence 555556777777764
No 145
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=4.6e-22 Score=169.57 Aligned_cols=91 Identities=21% Similarity=0.333 Sum_probs=71.4
Q ss_pred EEEeeeeEEcCc-cccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060 78 VEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA 152 (229)
Q Consensus 78 i~~~~ls~~y~~-~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~ 152 (229)
|+++||++.|++ .. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++|. .++|.++.. ...
T Consensus 1 l~~~~l~~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 73 (242)
T cd03295 1 IEFENVTKRYGGGKK----AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE---PTSGEIFIDGEDIREQDPVEL 73 (242)
T ss_pred CEEEEEEEEeCCcce----EeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCeEcCcCChHHh
Confidence 468999999986 43 7999999999999999999999999999999999999 99997 888875421 112
Q ss_pred hcCCCcccCcc---hhhhHHHHHHcc
Q 027060 153 RRGAPWTFNPL---LLLNCLKNLRNQ 175 (229)
Q Consensus 153 ~~~~~~~~~~~---~~~tv~e~l~~~ 175 (229)
+..+.+.+|.+ ..+|+.+|+.++
T Consensus 74 ~~~i~~~~q~~~~~~~~tv~e~l~~~ 99 (242)
T cd03295 74 RRKIGYVIQQIGLFPHMTVEENIALV 99 (242)
T ss_pred hcceEEEccCccccCCCcHHHHHHHH
Confidence 23344444443 237899998764
No 146
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.86 E-value=5.7e-22 Score=166.75 Aligned_cols=148 Identities=22% Similarity=0.236 Sum_probs=99.5
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH------
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE------ 149 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~------ 149 (229)
+|+++|+++.|++......+|+++||++.+|++++|+|+||||||||+++|+|+++ |++|. .++|.++..
T Consensus 1 ~l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 77 (220)
T TIGR02982 1 VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS---VQEGSLKVLGQELYGASEKEL 77 (220)
T ss_pred CEEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEhHhcCHhHH
Confidence 47899999999752111238999999999999999999999999999999999999 99997 888876532
Q ss_pred HHhhcCCCcccCcch---hhhHHHHHHccccccCC----------------------------CCCCCCCCchhhhhhcc
Q 027060 150 AHARRGAPWTFNPLL---LLNCLKNLRNQGSVYAP----------------------------SFDHGVGDPVEDDILVG 198 (229)
Q Consensus 150 ~~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~~----------------------------~~~~~~~~~~~~~l~~~ 198 (229)
...+.++.+.++... ..++.+|+.+....+.. .++.++.+++..+.++.
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~ 157 (220)
T TIGR02982 78 VQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALV 157 (220)
T ss_pred HHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHh
Confidence 112334444454432 36888888764322110 01123334444444445
Q ss_pred CCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 199 ~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
..++++++|+|+..||...+..+.+++..
T Consensus 158 ~~p~illlDEP~~~LD~~~~~~l~~~l~~ 186 (220)
T TIGR02982 158 HRPKLVLADEPTAALDSKSGRDVVELMQK 186 (220)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence 55556666666666666667777776653
No 147
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=5.3e-22 Score=170.07 Aligned_cols=94 Identities=18% Similarity=0.252 Sum_probs=73.1
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCC-----Cce-EecCCCHH
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KAS-SFDSQDPK 148 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~-----~G~-~~~g~~~~ 148 (229)
.++|+++|+++.|++.. +|+++||+|.+|++++|+|+||||||||+++|+|+++ |+ +|. .++|.++.
T Consensus 2 ~~~l~~~~l~~~~~~~~----il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~v~~~g~~~~ 74 (251)
T PRK14249 2 DPKIKIRGVNFFYHKHQ----VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMND---IVSGARLEGAVLLDNENIY 74 (251)
T ss_pred CceEEEEEEEEEECCee----EecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---ccccCCcccEEEECCEEcc
Confidence 45799999999998654 8999999999999999999999999999999999998 86 586 88887542
Q ss_pred H-----HHhhcCCCcccCcchh--hhHHHHHHcc
Q 027060 149 E-----AHARRGAPWTFNPLLL--LNCLKNLRNQ 175 (229)
Q Consensus 149 ~-----~~~~~~~~~~~~~~~~--~tv~e~l~~~ 175 (229)
. ...+..+.+.+|.+.+ .++.+|+.+.
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~ 108 (251)
T PRK14249 75 SPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFG 108 (251)
T ss_pred ccccChHHhhceEEEEecCCccCcCcHHHHHhhH
Confidence 1 1223344444444322 5889998764
No 148
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.9e-22 Score=183.70 Aligned_cols=149 Identities=17% Similarity=0.240 Sum_probs=97.5
Q ss_pred CeEEEeeeeEEcCccccc--------------------cccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccC
Q 027060 76 PVVEARCMDEVYDALAQR--------------------LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIW 135 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~--------------------~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~ 135 (229)
.+|+++||+|.|+....+ ..+|+++||+|++||+++|+||||||||||+|+|+|+++
T Consensus 3 ~~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~--- 79 (400)
T PRK10070 3 IKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE--- 79 (400)
T ss_pred cEEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---
Confidence 468888888888764311 126899999999999999999999999999999999999
Q ss_pred CCCce-EecCCCHHH-----H--HhhcCCCcccCcc---hhhhHHHHHHccccccC------------------------
Q 027060 136 PQKAS-SFDSQDPKE-----A--HARRGAPWTFNPL---LLLNCLKNLRNQGSVYA------------------------ 180 (229)
Q Consensus 136 p~~G~-~~~g~~~~~-----~--~~~~~~~~~~~~~---~~~tv~e~l~~~~~~~~------------------------ 180 (229)
|++|. .++|.++.. . .++..+.+.+|.. +.+|+.+|+.++.....
T Consensus 80 p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~ 159 (400)
T PRK10070 80 PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAH 159 (400)
T ss_pred CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhh
Confidence 99997 888875421 1 1123444555443 34799999987532110
Q ss_pred ---CCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 181 ---PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 181 ---~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
..++.++.+++..+.++..++++|++|+|+..||...+..+.+++..
T Consensus 160 ~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~ 209 (400)
T PRK10070 160 SYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVK 209 (400)
T ss_pred cCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHH
Confidence 01122333444444444444555555555555555567777776643
No 149
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.86 E-value=4.6e-22 Score=177.42 Aligned_cols=98 Identities=14% Similarity=0.208 Sum_probs=76.2
Q ss_pred CCeEEEeeeeEEcCccc---------cccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecC
Q 027060 75 IPVVEARCMDEVYDALA---------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS 144 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~---------~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g 144 (229)
+++|+++||++.|+... ....+++|+||+|.+||++||+|+||||||||+++|+|+++ |++|. .++|
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~---p~~G~I~~~G 82 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK---ATDGEVAWLG 82 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC---CCCcEEEECC
Confidence 46899999999996321 12458999999999999999999999999999999999999 99997 8888
Q ss_pred CCHHH------HHhhcCCCcccCcc-----hhhhHHHHHHcc
Q 027060 145 QDPKE------AHARRGAPWTFNPL-----LLLNCLKNLRNQ 175 (229)
Q Consensus 145 ~~~~~------~~~~~~~~~~~~~~-----~~~tv~e~l~~~ 175 (229)
+++.. ...+..+.+.||.+ +.+++.+|+.++
T Consensus 83 ~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~ 124 (331)
T PRK15079 83 KDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEP 124 (331)
T ss_pred EECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHH
Confidence 76421 11233466666654 237889988653
No 150
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.86 E-value=3.7e-22 Score=165.79 Aligned_cols=139 Identities=21% Similarity=0.218 Sum_probs=106.2
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHH--hcccCCCCce-EecCCCHHH----H
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKAS-SFDSQDPKE----A 150 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gl--l~~~~p~~G~-~~~g~~~~~----~ 150 (229)
|+++|+++.|++.. +++++||+|.+||+++|+|+||||||||+++|+|+ ++ |++|. .++|+++.. .
T Consensus 1 l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---p~~G~i~~~g~~~~~~~~~~ 73 (200)
T cd03217 1 LEIKDLHVSVGGKE----ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYE---VTEGEILFKGEDITDLPPEE 73 (200)
T ss_pred CeEEEEEEEeCCEE----eeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CCccEEEECCEECCcCCHHH
Confidence 46899999998644 89999999999999999999999999999999999 47 89997 888875421 1
Q ss_pred HhhcCCCcccCcch---hhhHHHHHHccccccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 151 HARRGAPWTFNPLL---LLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 151 ~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
..+..+.+.+|... ..++.+++.. ....++.++.+++..+.++..+++++++|+|+..||...+..+.+++..
T Consensus 74 ~~~~~i~~v~q~~~~~~~~~~~~~l~~----~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~ 149 (200)
T cd03217 74 RARLGIFLAFQYPPEIPGVKNADFLRY----VNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINK 149 (200)
T ss_pred HhhCcEEEeecChhhccCccHHHHHhh----ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 22233444444432 3667776621 1124667778888888888888888888888888888888888887754
No 151
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=6.5e-22 Score=169.24 Aligned_cols=94 Identities=19% Similarity=0.246 Sum_probs=72.4
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC-----CCce-EecCCCHH
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQDPK 148 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p-----~~G~-~~~g~~~~ 148 (229)
|++|+++|+++.|++.. +|+++||+|.+||+++|+|+||||||||+++|+|+++ | ++|. .++|.++.
T Consensus 1 ~~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~v~~~g~~~~ 73 (249)
T PRK14253 1 MNKFNIENLDLFYGENQ----ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMND---LIEGVKITGKLTMDGEDIY 73 (249)
T ss_pred CCeEEEeccEEEECCee----eeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcc---cccCCCCceEEEECCEEcc
Confidence 35799999999998654 8999999999999999999999999999999999987 6 4886 88886542
Q ss_pred ----HHHhhcCCCcccCcchh--hhHHHHHHcc
Q 027060 149 ----EAHARRGAPWTFNPLLL--LNCLKNLRNQ 175 (229)
Q Consensus 149 ----~~~~~~~~~~~~~~~~~--~tv~e~l~~~ 175 (229)
....+.++.+.+|.+.+ .++.+|+.+.
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~tv~~~l~~~ 106 (249)
T PRK14253 74 GNIDVADLRIKVGMVFQKPNPFPMSIYENVAYG 106 (249)
T ss_pred cccchHHHHhheeEEecCCCcCcccHHHHHHhH
Confidence 11223344444444322 6888988764
No 152
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.86 E-value=3.3e-22 Score=168.41 Aligned_cols=142 Identities=19% Similarity=0.251 Sum_probs=95.8
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhcCC
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARRGA 156 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~~~ 156 (229)
|+++|+++.|++.. +|+++||+|.+||+++|+|+||||||||+++|+|+++ |++|. .++|.++.... ...+
T Consensus 1 l~l~~v~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~~~~~~~-~~~~ 72 (223)
T TIGR03740 1 LETKNLSKRFGKQT----AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR---PTSGEIIFDGHPWTRKD-LHKI 72 (223)
T ss_pred CEEEeEEEEECCEE----EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEeccccc-cccE
Confidence 47899999998654 8999999999999999999999999999999999999 99997 88887543211 1233
Q ss_pred CcccCc---chhhhHHHHHHccccccC-----------------------CCCCCCCCCchhhhhhccCCccEEEecCCe
Q 027060 157 PWTFNP---LLLLNCLKNLRNQGSVYA-----------------------PSFDHGVGDPVEDDILVGLQHKVVIVDGNY 210 (229)
Q Consensus 157 ~~~~~~---~~~~tv~e~l~~~~~~~~-----------------------~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~ 210 (229)
.+.++. +..+++.+|+.+...... ..++.++.+++..+.++...++++++|+|+
T Consensus 73 ~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~ 152 (223)
T TIGR03740 73 GSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPT 152 (223)
T ss_pred EEEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 333333 333789999875322111 011223334444444444555556666666
Q ss_pred eeecccCHHHHHHHHhh
Q 027060 211 LFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 211 LlLDEP~~~~l~~~l~~ 227 (229)
..||...++.+.+++..
T Consensus 153 ~~LD~~~~~~l~~~L~~ 169 (223)
T TIGR03740 153 NGLDPIGIQELRELIRS 169 (223)
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 66665567777777653
No 153
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.86 E-value=7.9e-22 Score=170.52 Aligned_cols=145 Identities=14% Similarity=0.191 Sum_probs=100.7
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HH
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AH 151 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~ 151 (229)
.+|+++||++.|++.. +|+++||+|.+|++++|+|+||||||||+++|+|+++ |++|. .++|+++.. ..
T Consensus 6 ~~l~i~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~ 78 (265)
T PRK10253 6 ARLRGEQLTLGYGKYT----VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT---PAHGHVWLDGEHIQHYASKE 78 (265)
T ss_pred cEEEEEEEEEEECCEE----EeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCcEEEECCEEhhhCCHHH
Confidence 4799999999998754 8999999999999999999999999999999999999 99997 888876432 11
Q ss_pred hhcCCCcccCcch---hhhHHHHHHccccccC-------------------------------CCCCCCCCCchhhhhhc
Q 027060 152 ARRGAPWTFNPLL---LLNCLKNLRNQGSVYA-------------------------------PSFDHGVGDPVEDDILV 197 (229)
Q Consensus 152 ~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~l~~ 197 (229)
.+..+.+.+|... ..++.+|+.++..... ..++.++.+++..+.++
T Consensus 79 ~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral 158 (265)
T PRK10253 79 VARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVL 158 (265)
T ss_pred HhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHH
Confidence 1223444444432 3688888876421000 01122334444445555
Q ss_pred cCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 198 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 198 ~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
..+++++++|+|+..||...+..+.+++..
T Consensus 159 ~~~p~llllDEPt~gLD~~~~~~l~~~L~~ 188 (265)
T PRK10253 159 AQETAIMLLDEPTTWLDISHQIDLLELLSE 188 (265)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 556666666666666666667777777653
No 154
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.86 E-value=4.6e-22 Score=170.53 Aligned_cols=143 Identities=17% Similarity=0.204 Sum_probs=96.4
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-------
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE------- 149 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~------- 149 (229)
|+++||++.|++.. +|+++||+|++||+++|+|+||||||||+++|+|+++ |++|. .++|+++..
T Consensus 1 i~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~~ 73 (252)
T TIGR03005 1 VRFSDVTKRFGILT----VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP---IDEGQIQVEGEQLYHMPGRNGP 73 (252)
T ss_pred CEEEEEEEEeCCee----EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccccccccc
Confidence 47899999998654 8999999999999999999999999999999999999 99997 788865421
Q ss_pred ---------HHhhcCCCcccCcc---hhhhHHHHHHcccc----ccC------------------------CCCCCCCCC
Q 027060 150 ---------AHARRGAPWTFNPL---LLLNCLKNLRNQGS----VYA------------------------PSFDHGVGD 189 (229)
Q Consensus 150 ---------~~~~~~~~~~~~~~---~~~tv~e~l~~~~~----~~~------------------------~~~~~~~~~ 189 (229)
...+..+.+.+|.. ...++.+|+.++.. ... ..++.++.+
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~q 153 (252)
T TIGR03005 74 LVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQ 153 (252)
T ss_pred ccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHH
Confidence 11233444444443 23688898876311 000 011223334
Q ss_pred chhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 190 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 190 ~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
++..+.++..+++++++|+|+..||...+..+.+++..
T Consensus 154 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 191 (252)
T TIGR03005 154 RVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRR 191 (252)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 44444444455555666666666665567777777654
No 155
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.86 E-value=5.2e-22 Score=186.18 Aligned_cols=94 Identities=22% Similarity=0.283 Sum_probs=75.4
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---- 149 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---- 149 (229)
.++|+++|+++.|++.. +|+|+||+|.+||++||+||||||||||+|+|+|+++ |++|. .++|.++..
T Consensus 3 ~~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~ 75 (510)
T PRK09700 3 TPYISMAGIGKSFGPVH----ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE---PTKGTITINNINYNKLDHK 75 (510)
T ss_pred CceEEEeeeEEEcCCeE----EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC---CCccEEEECCEECCCCCHH
Confidence 35799999999998754 8999999999999999999999999999999999999 99997 888865421
Q ss_pred HHhhcCCCcccCcc---hhhhHHHHHHcc
Q 027060 150 AHARRGAPWTFNPL---LLLNCLKNLRNQ 175 (229)
Q Consensus 150 ~~~~~~~~~~~~~~---~~~tv~e~l~~~ 175 (229)
...+.++.+.+|.. ..+++.+|+.++
T Consensus 76 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 104 (510)
T PRK09700 76 LAAQLGIGIIYQELSVIDELTVLENLYIG 104 (510)
T ss_pred HHHHCCeEEEeecccccCCCcHHHHhhhc
Confidence 12233455555543 337899999764
No 156
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=9e-22 Score=170.65 Aligned_cols=98 Identities=19% Similarity=0.255 Sum_probs=73.1
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhccc--CCCCce-EecCCCHH---
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQDPK--- 148 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~--~p~~G~-~~~g~~~~--- 148 (229)
..+|+++||++.|++.. +|+++||+|.+||+++|+|+||||||||+++|+|+++.. .|++|. .++|.++.
T Consensus 11 ~~~l~i~nl~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~ 86 (269)
T PRK14259 11 NIIISLQNVTISYGTFE----AVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPR 86 (269)
T ss_pred CceEEEEeEEEEECCEE----EEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 34799999999998754 899999999999999999999999999999999997610 137897 88886542
Q ss_pred --HHHhhcCCCcccCcchh--hhHHHHHHccc
Q 027060 149 --EAHARRGAPWTFNPLLL--LNCLKNLRNQG 176 (229)
Q Consensus 149 --~~~~~~~~~~~~~~~~~--~tv~e~l~~~~ 176 (229)
....+..+.+.+|...+ .|+.+|+.+..
T Consensus 87 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~ 118 (269)
T PRK14259 87 VDPVEVRRRIGMVFQQPNPFPKSIYENIAFGA 118 (269)
T ss_pred CCHHHHhhceEEEccCCccchhhHHHHHhhhh
Confidence 11222334444443321 58999998653
No 157
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=9.1e-22 Score=170.39 Aligned_cols=150 Identities=15% Similarity=0.133 Sum_probs=98.8
Q ss_pred CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhccc--CCCCce-EecCCCHHH-
Q 027060 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQDPKE- 149 (229)
Q Consensus 74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~--~p~~G~-~~~g~~~~~- 149 (229)
+.++|+++|+++.|+++. +|+++||+|.+||+++|+|+||||||||+++|+|+++.. .|++|. .++|.++..
T Consensus 17 ~~~~l~~~nl~~~~~~~~----il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~ 92 (267)
T PRK14237 17 EEIALSTKDLHVYYGKKE----AIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRK 92 (267)
T ss_pred CCeEEEEeeEEEEECCee----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccc
Confidence 345799999999997654 899999999999999999999999999999999998500 037897 888876521
Q ss_pred ----HHhhcCCCcccCcch--hhhHHHHHHccccccC--------------------------------CCCCCCCCCch
Q 027060 150 ----AHARRGAPWTFNPLL--LLNCLKNLRNQGSVYA--------------------------------PSFDHGVGDPV 191 (229)
Q Consensus 150 ----~~~~~~~~~~~~~~~--~~tv~e~l~~~~~~~~--------------------------------~~~~~~~~~~~ 191 (229)
...+.++.+.+|.+. ..++.+|+.++..... ..++.++.+++
T Consensus 93 ~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl 172 (267)
T PRK14237 93 EINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRL 172 (267)
T ss_pred cCChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHH
Confidence 122334555555432 2689999976422110 01112233334
Q ss_pred hhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 192 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 192 ~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
..+.++..++++|++|+++..||...+..+.+++..
T Consensus 173 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 208 (267)
T PRK14237 173 CIARAIAVKPDILLMDEPASALDPISTMQLEETMFE 208 (267)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 444444455555666666666665567777777654
No 158
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.86 E-value=1.1e-21 Score=164.74 Aligned_cols=145 Identities=17% Similarity=0.139 Sum_probs=97.3
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHhh
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHAR 153 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~~ 153 (229)
|+++|+++.|++.. ..+|+++||+|++|++++|+|+||||||||+++|+|+++ |++|. .++|.++.. ...+
T Consensus 3 l~~~~l~~~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 77 (221)
T cd03244 3 IEFKNVSLRYRPNL--PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE---LSSGSILIDGVDISKIGLHDLR 77 (221)
T ss_pred EEEEEEEEecCCCC--cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhHhCCHHHHh
Confidence 78999999997531 127999999999999999999999999999999999999 99997 888876432 1122
Q ss_pred cCCCcccCcchh--hhHHHHHHcccccc-------------------------------CCCCCCCCCCchhhhhhccCC
Q 027060 154 RGAPWTFNPLLL--LNCLKNLRNQGSVY-------------------------------APSFDHGVGDPVEDDILVGLQ 200 (229)
Q Consensus 154 ~~~~~~~~~~~~--~tv~e~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~ 200 (229)
..+.+.+|...+ .++.+|+.+..... ...++.++.+++..+.++..+
T Consensus 78 ~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~ 157 (221)
T cd03244 78 SRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRK 157 (221)
T ss_pred hhEEEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcC
Confidence 334444443322 57888876431110 011222334444444455555
Q ss_pred ccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 201 HKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 201 ~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
++++++|+|+..||...+..+.+++..
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~l~~ 184 (221)
T cd03244 158 SKILVLDEATASVDPETDALIQKTIRE 184 (221)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 666666666666666667777777754
No 159
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.86 E-value=1.8e-21 Score=164.20 Aligned_cols=97 Identities=18% Similarity=0.197 Sum_probs=74.4
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---H
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---A 150 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~ 150 (229)
..+|+++++++.|++.. ...+|+++||+|++|++++|+||||||||||+++|+|+++ |++|. .++|.++.. .
T Consensus 9 ~~~l~~~~l~~~~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~ 84 (226)
T cd03248 9 KGIVKFQNVTFAYPTRP-DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ---PQGGQVLLDGKPISQYEHK 84 (226)
T ss_pred CceEEEEEEEEEeCCCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCcEEEECCCchHHcCHH
Confidence 34799999999997531 1237999999999999999999999999999999999999 99997 888876532 1
Q ss_pred HhhcCCCcccCcchh--hhHHHHHHcc
Q 027060 151 HARRGAPWTFNPLLL--LNCLKNLRNQ 175 (229)
Q Consensus 151 ~~~~~~~~~~~~~~~--~tv~e~l~~~ 175 (229)
..+..+.+.+|...+ .++.+|+.++
T Consensus 85 ~~~~~i~~~~q~~~l~~~tv~~nl~~~ 111 (226)
T cd03248 85 YLHSKVSLVGQEPVLFARSLQDNIAYG 111 (226)
T ss_pred HHHhhEEEEecccHHHhhhHHHHhccc
Confidence 222334444444332 6888888754
No 160
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=9.7e-22 Score=169.28 Aligned_cols=95 Identities=15% Similarity=0.211 Sum_probs=72.8
Q ss_pred CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC-----CCce-EecCCCH
Q 027060 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQDP 147 (229)
Q Consensus 74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p-----~~G~-~~~g~~~ 147 (229)
.+++|+++|+++.|++.. +|+++||+|++||+++|+|+||||||||+++|+|+++ | ++|. .++|+++
T Consensus 9 ~~~~l~i~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~p~~~~~G~i~~~g~~~ 81 (259)
T PRK14274 9 KQEVYQINGMNLWYGQHH----ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQ---MVPNVKLTGEMNYNGSNI 81 (259)
T ss_pred CCceEEEeeEEEEECCee----eEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc---CCCCCCCceEEEECCEEc
Confidence 456899999999998654 8999999999999999999999999999999999986 4 5886 8888764
Q ss_pred HH-----HHhhcCCCcccCcch--hhhHHHHHHcc
Q 027060 148 KE-----AHARRGAPWTFNPLL--LLNCLKNLRNQ 175 (229)
Q Consensus 148 ~~-----~~~~~~~~~~~~~~~--~~tv~e~l~~~ 175 (229)
.. ...+..+.+.+|... ..++.+|+.+.
T Consensus 82 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~ 116 (259)
T PRK14274 82 LKGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYG 116 (259)
T ss_pred cccccCHHHHhhceEEEecCCcccccCHHHHHHhH
Confidence 21 122233444444322 14888888764
No 161
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=1.1e-21 Score=166.44 Aligned_cols=143 Identities=18% Similarity=0.182 Sum_probs=95.2
Q ss_pred EEEeeeeEEcCc-cccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060 78 VEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA 152 (229)
Q Consensus 78 i~~~~ls~~y~~-~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~ 152 (229)
|+++|+++.|++ .. +|+++||+|.+|++++|+|+||||||||+++|+|+++ |++|. .++|.++.. ...
T Consensus 1 l~~~~l~~~~~~~~~----~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~v~~~g~~~~~~~~~~~ 73 (236)
T cd03253 1 IEFENVTFAYDPGRP----VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD---VSSGSILIDGQDIREVTLDSL 73 (236)
T ss_pred CEEEEEEEEeCCCCc----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCEEEECCEEhhhCCHHHH
Confidence 468999999963 33 7999999999999999999999999999999999999 99997 888876432 122
Q ss_pred hcCCCcccCcch--hhhHHHHHHccccccC--------------------------------CCCCCCCCCchhhhhhcc
Q 027060 153 RRGAPWTFNPLL--LLNCLKNLRNQGSVYA--------------------------------PSFDHGVGDPVEDDILVG 198 (229)
Q Consensus 153 ~~~~~~~~~~~~--~~tv~e~l~~~~~~~~--------------------------------~~~~~~~~~~~~~~l~~~ 198 (229)
+..+.+.++... ..|+.+|+.++..... ..++.++.+++..+.++.
T Consensus 74 ~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~ 153 (236)
T cd03253 74 RRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAIL 153 (236)
T ss_pred HhhEEEECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 233444444332 2689999876422100 011223333444444444
Q ss_pred CCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 199 ~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
.+++++++|+|+..||...+..+.+++..
T Consensus 154 ~~p~llllDEP~~~LD~~~~~~l~~~l~~ 182 (236)
T cd03253 154 KNPPILLLDEATSALDTHTEREIQAALRD 182 (236)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 55555555555555555567777777653
No 162
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=8e-22 Score=168.76 Aligned_cols=95 Identities=19% Similarity=0.292 Sum_probs=71.1
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhccc--CCCCce-EecCCCHHH----
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQDPKE---- 149 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~--~p~~G~-~~~g~~~~~---- 149 (229)
.|+++||++.|++.. +++|+||+|++||+++|+|+||||||||+++|+|+++.. .+++|. .++|+++..
T Consensus 3 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 3 KISVKDLDLFYGDFQ----ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred eEEEEEEEEEECCce----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 589999999998654 899999999999999999999999999999999987500 016897 888876431
Q ss_pred -HHhhcCCCcccCcchh--hhHHHHHHcc
Q 027060 150 -AHARRGAPWTFNPLLL--LNCLKNLRNQ 175 (229)
Q Consensus 150 -~~~~~~~~~~~~~~~~--~tv~e~l~~~ 175 (229)
...+..+.+.+|.+.+ .++.+|+.++
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~ 107 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYG 107 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHH
Confidence 1123334444443221 6899999764
No 163
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=6.9e-22 Score=185.23 Aligned_cols=95 Identities=21% Similarity=0.289 Sum_probs=75.2
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC--CCce-EecCCCHHH--
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKAS-SFDSQDPKE-- 149 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p--~~G~-~~~g~~~~~-- 149 (229)
+++|+++|+++.|++.. +|+|+||+|.+||+++|+||||||||||+|+|+|+++ | ++|. .++|.++..
T Consensus 3 ~~~l~~~nl~~~~~~~~----il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~~~G~i~~~g~~~~~~~ 75 (506)
T PRK13549 3 EYLLEMKNITKTFGGVK----ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP---HGTYEGEIIFEGEELQASN 75 (506)
T ss_pred CceEEEeeeEEEeCCeE----eecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCCCeEEEECCEECCCCC
Confidence 35799999999998654 8999999999999999999999999999999999998 7 7897 788875421
Q ss_pred --HHhhcCCCcccCcc---hhhhHHHHHHccc
Q 027060 150 --AHARRGAPWTFNPL---LLLNCLKNLRNQG 176 (229)
Q Consensus 150 --~~~~~~~~~~~~~~---~~~tv~e~l~~~~ 176 (229)
...+..+.+.+|.+ ..+|+.+|+.++.
T Consensus 76 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 107 (506)
T PRK13549 76 IRDTERAGIAIIHQELALVKELSVLENIFLGN 107 (506)
T ss_pred HHHHHHCCeEEEEeccccCCCCcHHHHhhhcc
Confidence 11233455555443 3479999998754
No 164
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=8.1e-22 Score=171.62 Aligned_cols=148 Identities=15% Similarity=0.164 Sum_probs=99.8
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HH
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AH 151 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~ 151 (229)
++|+++||++.|++.. ...+|+++||+|.+||+++|+|+||||||||+++|+|+++ |++|. .++|+++.. ..
T Consensus 3 ~~l~~~~l~~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~i~~~~~~~ 78 (277)
T PRK13642 3 KILEVENLVFKYEKES-DVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE---EFEGKVKIDGELLTAENVWN 78 (277)
T ss_pred ceEEEEEEEEEcCCCC-cCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCCEEEECCEECCcCCHHH
Confidence 4799999999997531 2237999999999999999999999999999999999999 99997 888875421 12
Q ss_pred hhcCCCcccCcc----hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCC
Q 027060 152 ARRGAPWTFNPL----LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQ 200 (229)
Q Consensus 152 ~~~~~~~~~~~~----~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~ 200 (229)
.+..+.+.+|.+ ...++.+|+.++..... ..++.++.+++..+.++..+
T Consensus 79 ~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~ 158 (277)
T PRK13642 79 LRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALR 158 (277)
T ss_pred HhcceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 233455555543 22689999976422110 01122333444444444455
Q ss_pred ccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 201 HKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 201 ~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+++|++|+|+..||...++.+.+++..
T Consensus 159 p~llllDEPt~~LD~~~~~~l~~~l~~ 185 (277)
T PRK13642 159 PEIIILDESTSMLDPTGRQEIMRVIHE 185 (277)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 555555555555555567777777653
No 165
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.86 E-value=1.4e-21 Score=166.09 Aligned_cols=94 Identities=19% Similarity=0.217 Sum_probs=71.2
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHhh
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHAR 153 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~~ 153 (229)
|+++|+++.|++.. ...+|+++||+|++|++++|+|+||||||||+++|+|+++ |++|. .++|.++.. ...+
T Consensus 1 l~i~~l~~~~~~~~-~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 76 (238)
T cd03249 1 IEFKNVSFRYPSRP-DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD---PTSGEILLDGVDIRDLNLRWLR 76 (238)
T ss_pred CeEEEEEEecCCCC-CccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC---CCCCEEEECCEehhhcCHHHHH
Confidence 46899999997521 1237899999999999999999999999999999999999 99997 888876432 1112
Q ss_pred cCCCcccCcch--hhhHHHHHHcc
Q 027060 154 RGAPWTFNPLL--LLNCLKNLRNQ 175 (229)
Q Consensus 154 ~~~~~~~~~~~--~~tv~e~l~~~ 175 (229)
..+.+.+|... ..++.+|+.++
T Consensus 77 ~~i~~~~q~~~~~~~tv~e~l~~~ 100 (238)
T cd03249 77 SQIGLVSQEPVLFDGTIAENIRYG 100 (238)
T ss_pred hhEEEECCchhhhhhhHHHHhhcc
Confidence 23444444432 25888998764
No 166
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.1e-21 Score=168.10 Aligned_cols=96 Identities=18% Similarity=0.265 Sum_probs=71.4
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcc--cCCCCce-EecCCCHHH---
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQDPKE--- 149 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~--~~p~~G~-~~~g~~~~~--- 149 (229)
++|+++|+++.|++.. +|+++||+|.+||+++|+|+||||||||+++|+|+++. ..|++|. .++|+++..
T Consensus 3 ~~l~~~~l~~~~~~~~----~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~ 78 (251)
T PRK14251 3 NIISAKDVHLSYGNYE----ALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKM 78 (251)
T ss_pred ceEEEEeeEEEECCee----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccc
Confidence 4799999999998654 89999999999999999999999999999999999851 0126897 888875421
Q ss_pred --HHhhcCCCcccCcchh--hhHHHHHHcc
Q 027060 150 --AHARRGAPWTFNPLLL--LNCLKNLRNQ 175 (229)
Q Consensus 150 --~~~~~~~~~~~~~~~~--~tv~e~l~~~ 175 (229)
...+.++.+.+|...+ .++.+|+.++
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~tv~enl~~~ 108 (251)
T PRK14251 79 DLVELRKEVGMVFQQPTPFPFSVYDNVAYG 108 (251)
T ss_pred hHHHhhccEEEEecCCccCCCcHHHHHHHH
Confidence 1123334444443322 6888888754
No 167
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=8.8e-22 Score=168.89 Aligned_cols=97 Identities=16% Similarity=0.218 Sum_probs=73.1
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC---CCce-EecCCCHHH-
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP---QKAS-SFDSQDPKE- 149 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p---~~G~-~~~g~~~~~- 149 (229)
.++|+++|+++.|++.. +|+|+||+|.+||+++|+|+||||||||+++|+|++.. .| ++|. .++|+++..
T Consensus 4 ~~~i~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~~~~~~G~i~~~g~~~~~~ 78 (253)
T PRK14261 4 EIILSTKNLNLWYGEKH----ALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDL-IPGCRITGDILYNGENIMDS 78 (253)
T ss_pred cceEEEeeeEEEECCee----eeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccC-CCCCCcceEEEECCEEcccc
Confidence 45899999999998754 89999999999999999999999999999999998750 02 4796 888876432
Q ss_pred ----HHhhcCCCcccCcchh--hhHHHHHHccc
Q 027060 150 ----AHARRGAPWTFNPLLL--LNCLKNLRNQG 176 (229)
Q Consensus 150 ----~~~~~~~~~~~~~~~~--~tv~e~l~~~~ 176 (229)
...+.++.+.+|...+ .++.+|+.+..
T Consensus 79 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~ 111 (253)
T PRK14261 79 GADVVALRRKIGMVFQRPNPFPKSIYENVAYGP 111 (253)
T ss_pred ccchhhhhceEEEEecCCccCcccHHHHHHhhH
Confidence 1223344444444322 58999988653
No 168
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1e-21 Score=168.14 Aligned_cols=145 Identities=17% Similarity=0.224 Sum_probs=96.2
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHh--cccCC---CCce-EecCCCHHH
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWP---QKAS-SFDSQDPKE 149 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll--~~~~p---~~G~-~~~g~~~~~ 149 (229)
++|+++|+++.|++.. +|+++||+|.+||+++|+|+||||||||+++|+|+. . | ++|. .++|+++..
T Consensus 4 ~~l~~~~l~~~~~~~~----~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---p~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14239 4 PILQVSDLSVYYNKKK----ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLN---PEVTITGSIVYNGHNIYS 76 (252)
T ss_pred ceEEEEeeEEEECCee----eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccC---CCCCccceEEECCEECcC
Confidence 4799999999998654 899999999999999999999999999999999984 4 5 4896 888875421
Q ss_pred -----HHhhcCCCcccCcchh--hhHHHHHHccccccC--------------------------------CCCCCCCCCc
Q 027060 150 -----AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA--------------------------------PSFDHGVGDP 190 (229)
Q Consensus 150 -----~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~--------------------------------~~~~~~~~~~ 190 (229)
...+..+.+.+|...+ .|+.+|+.++..... ..++.++.++
T Consensus 77 ~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14239 77 PRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQR 156 (252)
T ss_pred cccchHhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHH
Confidence 1122334444443322 689999875421100 0111223334
Q ss_pred hhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 191 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 191 ~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+..+.++..+++++++|+|+..||...+..+.+++..
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 193 (252)
T PRK14239 157 VCIARVLATSPKIILLDEPTSALDPISAGKIEETLLG 193 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHH
Confidence 4444444455555666666666666567788777754
No 169
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=7.3e-22 Score=164.86 Aligned_cols=141 Identities=19% Similarity=0.188 Sum_probs=93.1
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH-HhhcC
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA-HARRG 155 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~-~~~~~ 155 (229)
|+++|+++.|++.. . ++||+|.+||+++|+||||||||||+++|+|+++ |++|. .++|.++... ..+..
T Consensus 1 i~~~~l~~~~~~~~----~--~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~---~~~G~i~~~g~~~~~~~~~~~~ 71 (211)
T cd03298 1 VRLDKIRFSYGEQP----M--HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET---PQSGRVLINGVDVTAAPPADRP 71 (211)
T ss_pred CEEEeEEEEeCCEe----c--ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcCcCCHhHcc
Confidence 47899999997632 3 9999999999999999999999999999999999 99997 8888754221 11223
Q ss_pred CCcccCcc---hhhhHHHHHHccccccCC---------------------------CCCCCCCCchhhhhhccCCccEEE
Q 027060 156 APWTFNPL---LLLNCLKNLRNQGSVYAP---------------------------SFDHGVGDPVEDDILVGLQHKVVI 205 (229)
Q Consensus 156 ~~~~~~~~---~~~tv~e~l~~~~~~~~~---------------------------~~~~~~~~~~~~~l~~~~~~rvLi 205 (229)
+.+.+|.. ..+|+.+|+.+....... .++.++.+++..+.++..++++++
T Consensus 72 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~lll 151 (211)
T cd03298 72 VSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLL 151 (211)
T ss_pred EEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 43444333 337899999764321100 112233344444444444555555
Q ss_pred ecCCeeeecccCHHHHHHHHhh
Q 027060 206 VDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 206 ~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+|+|+..||...+..+.+++..
T Consensus 152 lDEP~~~LD~~~~~~l~~~l~~ 173 (211)
T cd03298 152 LDEPFAALDPALRAEMLDLVLD 173 (211)
T ss_pred EcCCcccCCHHHHHHHHHHHHH
Confidence 5555555555567777777653
No 170
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.1e-21 Score=168.22 Aligned_cols=97 Identities=15% Similarity=0.205 Sum_probs=72.3
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcc-c-CCCCce-EecCCCHHH--
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK-I-WPQKAS-SFDSQDPKE-- 149 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~-~-~p~~G~-~~~g~~~~~-- 149 (229)
+..|+++|+++.|++.. +|+|+||+|++||+++|+|+||||||||+++|+|+++. + .|++|. .++|+++..
T Consensus 2 ~~~l~~~nl~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~ 77 (252)
T PRK14256 2 NNKVKLEQLNVHFGKNH----AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRG 77 (252)
T ss_pred CcEEEEEEEEEEeCCee----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEccccc
Confidence 45799999999998654 89999999999999999999999999999999999740 0 125797 888876421
Q ss_pred ---HHhhcCCCcccCc---chhhhHHHHHHcc
Q 027060 150 ---AHARRGAPWTFNP---LLLLNCLKNLRNQ 175 (229)
Q Consensus 150 ---~~~~~~~~~~~~~---~~~~tv~e~l~~~ 175 (229)
...+..+.+.+|. +..+|+.+|+.++
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~ 109 (252)
T PRK14256 78 VDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAG 109 (252)
T ss_pred CChHHhhccEEEEecCCCCCCcCcHHHHHHhH
Confidence 1223334444443 2337889988753
No 171
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.4e-21 Score=168.53 Aligned_cols=97 Identities=16% Similarity=0.224 Sum_probs=72.5
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcc--cCCCCce-EecCCCHHH--
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQDPKE-- 149 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~--~~p~~G~-~~~g~~~~~-- 149 (229)
..+|+++|+++.|++.. +|+|+||+|++||+++|+|+||||||||+++|+|+++. ..|++|. .++|.++..
T Consensus 11 ~~~l~~~~l~~~~~~~~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~ 86 (260)
T PRK10744 11 PSKIQVRNLNFYYGKFH----ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPK 86 (260)
T ss_pred CceEEEEEEEEEeCCeE----EeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccc
Confidence 44799999999998653 89999999999999999999999999999999999851 1137897 888865421
Q ss_pred ---HHhhcCCCcccCcch--hhhHHHHHHcc
Q 027060 150 ---AHARRGAPWTFNPLL--LLNCLKNLRNQ 175 (229)
Q Consensus 150 ---~~~~~~~~~~~~~~~--~~tv~e~l~~~ 175 (229)
...+..+.+.+|... ..++.+|+.++
T Consensus 87 ~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~ 117 (260)
T PRK10744 87 QDIALLRAKVGMVFQKPTPFPMSIYDNIAFG 117 (260)
T ss_pred cchHHHhcceEEEecCCccCcCcHHHHHhhh
Confidence 122333444444422 26888988764
No 172
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=8.9e-22 Score=171.41 Aligned_cols=96 Identities=16% Similarity=0.123 Sum_probs=72.0
Q ss_pred eEEEeeeeEEcCcccc-ccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----
Q 027060 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----- 149 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~-~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----- 149 (229)
.|+++||++.|++... ...+|+++||+|++|++++|+|+||||||||+++|+|+++ |++|. .++|+++..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~~ 78 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV---PTQGSVRVDDTLITSTSKNK 78 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccccccc
Confidence 3889999999975210 0127999999999999999999999999999999999999 99997 888875421
Q ss_pred --HHhhcCCCcccCcc----hhhhHHHHHHcc
Q 027060 150 --AHARRGAPWTFNPL----LLLNCLKNLRNQ 175 (229)
Q Consensus 150 --~~~~~~~~~~~~~~----~~~tv~e~l~~~ 175 (229)
...+..+.+.+|.. ...|+.+|+.++
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~ 110 (280)
T PRK13649 79 DIKQIRKKVGLVFQFPESQLFEETVLKDVAFG 110 (280)
T ss_pred CHHHHHhheEEEeeChhhhhccccHHHHHHHH
Confidence 11223344444442 125888888754
No 173
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.85 E-value=1.1e-21 Score=168.74 Aligned_cols=143 Identities=15% Similarity=0.155 Sum_probs=96.4
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHhh
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHAR 153 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~~ 153 (229)
|+++|+++.|++.. +|+++||+|.+||+++|+|+||||||||+++|+|+++ |++|. .++|.++.. ...+
T Consensus 2 l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 74 (256)
T TIGR03873 2 LRLSRVSWSAGGRL----IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR---PDAGTVDLAGVDLHGLSRRARA 74 (256)
T ss_pred ceEEeEEEEECCEE----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCEEcccCCHHHHh
Confidence 68899999998754 8999999999999999999999999999999999999 99997 888875422 1112
Q ss_pred cCCCcccCcc---hhhhHHHHHHccccc----cC---------------------------CCCCCCCCCchhhhhhccC
Q 027060 154 RGAPWTFNPL---LLLNCLKNLRNQGSV----YA---------------------------PSFDHGVGDPVEDDILVGL 199 (229)
Q Consensus 154 ~~~~~~~~~~---~~~tv~e~l~~~~~~----~~---------------------------~~~~~~~~~~~~~~l~~~~ 199 (229)
..+.+.+|.+ ...++.+|+.++... .. ..++.++.+++..+.++..
T Consensus 75 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~ 154 (256)
T TIGR03873 75 RRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQ 154 (256)
T ss_pred hheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 2333333332 337899998764210 00 0011233334444444444
Q ss_pred CccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 200 ~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+++++++|+|+..||...+..+.+++..
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~ 182 (256)
T TIGR03873 155 EPKLLLLDEPTNHLDVRAQLETLALVRE 182 (256)
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence 5555666666666665567777777654
No 174
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1.4e-21 Score=174.13 Aligned_cols=150 Identities=18% Similarity=0.184 Sum_probs=103.6
Q ss_pred CCeEEEeeeeEEcCccc------cccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCH
Q 027060 75 IPVVEARCMDEVYDALA------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDP 147 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~------~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~ 147 (229)
+++|+++||++.|+... ..+.+|+||||+|.+||++||+|+||||||||+++|+|+++ |++|. .++|.++
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~---p~~G~i~~~g~~l 79 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET---PTGGELYYQGQDL 79 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC---CCCcEEEECCEEc
Confidence 35799999999996321 12358999999999999999999999999999999999999 99997 8888754
Q ss_pred HH------HHhhcCCCcccCcch-----hhhHHHHHHcccccc-----------------------------CCCCCCCC
Q 027060 148 KE------AHARRGAPWTFNPLL-----LLNCLKNLRNQGSVY-----------------------------APSFDHGV 187 (229)
Q Consensus 148 ~~------~~~~~~~~~~~~~~~-----~~tv~e~l~~~~~~~-----------------------------~~~~~~~~ 187 (229)
.. ...+..+.+.||.+. .+++.+++......+ ...++.++
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq 159 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQ 159 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHH
Confidence 21 122334566666542 256666654321110 11233455
Q ss_pred CCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 188 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 188 ~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
.+++..+.++..++++||+|+++..||...+.++.+++..
T Consensus 160 ~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~ 199 (327)
T PRK11308 160 RQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMD 199 (327)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHH
Confidence 5566666666666666666666666666678888887754
No 175
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.85 E-value=4.9e-22 Score=162.45 Aligned_cols=136 Identities=19% Similarity=0.225 Sum_probs=101.5
Q ss_pred EEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHhhc
Q 027060 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHARR 154 (229)
Q Consensus 79 ~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~~~ 154 (229)
+++|+++.|++.. +|+++||+|.+|++++|+|+||||||||+++|+|+++ |++|. .++|.++.. ...+.
T Consensus 1 ~~~~l~~~~~~~~----~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~~~ 73 (180)
T cd03214 1 EVENLSVGYGGRT----VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK---PSSGEILLDGKDLASLSPKELAR 73 (180)
T ss_pred CeeEEEEEECCee----eEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCcCCHHHHHH
Confidence 4789999998643 8999999999999999999999999999999999999 99997 888865421 11122
Q ss_pred CCCcccCcchhhhHHHHHHcccc--ccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 155 GAPWTFNPLLLLNCLKNLRNQGS--VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 155 ~~~~~~~~~~~~tv~e~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
.+.+.+| +++.+.+... .....++.++.+++..+.++..+++++++|+|+..||...+..+.+++..
T Consensus 74 ~i~~~~q------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~ 142 (180)
T cd03214 74 KIAYVPQ------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRR 142 (180)
T ss_pred HHhHHHH------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 3344444 2222222111 11234667778888888888888899999999999998888888887764
No 176
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.4e-21 Score=169.85 Aligned_cols=150 Identities=17% Similarity=0.201 Sum_probs=97.4
Q ss_pred CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhccc--CCCCce-EecCCCHHH-
Q 027060 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQDPKE- 149 (229)
Q Consensus 74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~--~p~~G~-~~~g~~~~~- 149 (229)
..++|+++|+++.|++.. +|+++||+|.+||+++|+|+||||||||+++|+|++... .|++|. .++|+++..
T Consensus 17 ~~~~l~~~nl~~~~~~~~----~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~ 92 (274)
T PRK14265 17 DHSVFEVEGVKVFYGGFL----ALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDS 92 (274)
T ss_pred CCceEEEeeEEEEeCCeE----EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccc
Confidence 345899999999998754 899999999999999999999999999999999998510 015786 888876421
Q ss_pred ----HHhhcCCCcccCcchh--hhHHHHHHccccccC------------------------------CCCCCCCCCchhh
Q 027060 150 ----AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA------------------------------PSFDHGVGDPVED 193 (229)
Q Consensus 150 ----~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~------------------------------~~~~~~~~~~~~~ 193 (229)
...+.++.+.+|...+ .++.+|+.++..... ..++.++.+++..
T Consensus 93 ~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~L 172 (274)
T PRK14265 93 QINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCI 172 (274)
T ss_pred cchhHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHH
Confidence 1223344444444322 478888876421100 0112233344444
Q ss_pred hhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 194 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 194 ~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+.++..++++|++|+|+..||...+..+.+++..
T Consensus 173 AraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~ 206 (274)
T PRK14265 173 ARAIAMKPDVLLMDEPCSALDPISTRQVEELCLE 206 (274)
T ss_pred HHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 4444455555555555555555567777777654
No 177
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.4e-21 Score=167.29 Aligned_cols=93 Identities=19% Similarity=0.293 Sum_probs=70.7
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHH---hcccCC--CCce-EecCCCHHH
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR---INKIWP--QKAS-SFDSQDPKE 149 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gl---l~~~~p--~~G~-~~~g~~~~~ 149 (229)
++|+++|+++.|++.. +|+++||+|.+||+++|+|+||||||||+++|+|+ ++ | ++|. .++|.++..
T Consensus 2 ~~l~~~~~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~---~~~~~G~i~~~g~~~~~ 74 (250)
T PRK14245 2 VKIDARDVNFWYGDFH----ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIP---ATRLEGEIRIDGRNIYD 74 (250)
T ss_pred cEEEEEEEEEEECCEe----EEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccC---CCCCceEEEECCEeccc
Confidence 5799999999998754 89999999999999999999999999999999997 34 4 4897 888876532
Q ss_pred -----HHhhcCCCcccCcchh--hhHHHHHHcc
Q 027060 150 -----AHARRGAPWTFNPLLL--LNCLKNLRNQ 175 (229)
Q Consensus 150 -----~~~~~~~~~~~~~~~~--~tv~e~l~~~ 175 (229)
...+.++.+.+|...+ .++.+|+.++
T Consensus 75 ~~~~~~~~~~~i~~v~q~~~~~~~tv~~nl~~~ 107 (250)
T PRK14245 75 KGVQVDELRKNVGMVFQRPNPFPKSIFENVAYG 107 (250)
T ss_pred ccccHHHHhhheEEEecCCccCcccHHHHHHHH
Confidence 1223334444443221 5888888754
No 178
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.85 E-value=1.8e-21 Score=163.97 Aligned_cols=95 Identities=22% Similarity=0.294 Sum_probs=68.9
Q ss_pred eEEEeeeeEEcCccc---cccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-Eec--CC--CHH
Q 027060 77 VVEARCMDEVYDALA---QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFD--SQ--DPK 148 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~---~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~--g~--~~~ 148 (229)
+|+++|+++.|+... ....+|+|+||+|.+||+++|+|+||||||||+++|+|+++ |++|. .++ |. ++.
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~~~g~~~~~~ 77 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL---PDSGRILVRHEGAWVDLA 77 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEEecCCCccchh
Confidence 488999999996410 01237999999999999999999999999999999999999 99997 776 42 321
Q ss_pred H----H---HhhcCCCcccCcc---hhhhHHHHHHc
Q 027060 149 E----A---HARRGAPWTFNPL---LLLNCLKNLRN 174 (229)
Q Consensus 149 ~----~---~~~~~~~~~~~~~---~~~tv~e~l~~ 174 (229)
. . .++..+.+.+|.. ..+++.+|+.+
T Consensus 78 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~ 113 (224)
T TIGR02324 78 QASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAE 113 (224)
T ss_pred hcCHHHHHHHHhcceEEEecccccCCCccHHHHHHH
Confidence 1 0 1123344444433 33678888764
No 179
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1.2e-21 Score=170.98 Aligned_cols=147 Identities=15% Similarity=0.159 Sum_probs=98.9
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCC---ce-EecCCCHHH--
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK---AS-SFDSQDPKE-- 149 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~---G~-~~~g~~~~~-- 149 (229)
.+|+++|+++.|++.. ..+|+++||+|.+||+++|+|+||||||||+++|+|+++ |++ |. .++|.++..
T Consensus 4 ~~l~i~~l~~~~~~~~--~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~---p~~g~~G~i~i~g~~~~~~~ 78 (282)
T PRK13640 4 NIVEFKHVSFTYPDSK--KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL---PDDNPNSKITVDGITLTAKT 78 (282)
T ss_pred ceEEEEEEEEEcCCCC--ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC---CCCCCCcEEEECCEECCcCC
Confidence 4799999999997521 127999999999999999999999999999999999998 887 76 888876421
Q ss_pred -HHhhcCCCcccCcc----hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhc
Q 027060 150 -AHARRGAPWTFNPL----LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILV 197 (229)
Q Consensus 150 -~~~~~~~~~~~~~~----~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~ 197 (229)
...+..+++.+|.+ ...|+.+|+.+...... ..++.++.+++..+.++
T Consensus 79 ~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral 158 (282)
T PRK13640 79 VWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGIL 158 (282)
T ss_pred HHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHH
Confidence 11223344555543 23689999976422110 01122334444444445
Q ss_pred cCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 198 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 198 ~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
..++++|++|+|+..||...+..+.+++..
T Consensus 159 ~~~P~llllDEPt~gLD~~~~~~l~~~l~~ 188 (282)
T PRK13640 159 AVEPKIIILDESTSMLDPAGKEQILKLIRK 188 (282)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 555555666666666666567777777653
No 180
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.85 E-value=8e-22 Score=167.76 Aligned_cols=90 Identities=23% Similarity=0.279 Sum_probs=68.4
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHh--cccCCCCce-EecCCCHHH----H
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKAS-SFDSQDPKE----A 150 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll--~~~~p~~G~-~~~g~~~~~----~ 150 (229)
|+++|+++.|++.. +|+|+||+|++||+++|+||||||||||+++|+|++ + |++|. .++|.++.. .
T Consensus 1 l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~~~G~i~~~g~~~~~~~~~~ 73 (243)
T TIGR01978 1 LKIKDLHVSVEDKE----ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYE---VTSGTILFKGQDLLELEPDE 73 (243)
T ss_pred CeEeeEEEEECCEE----EEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCcceEEECCEecCCCCHHH
Confidence 47899999998654 899999999999999999999999999999999994 7 89997 888875421 1
Q ss_pred HhhcCCCcccCcc---hhhhHHHHHHc
Q 027060 151 HARRGAPWTFNPL---LLLNCLKNLRN 174 (229)
Q Consensus 151 ~~~~~~~~~~~~~---~~~tv~e~l~~ 174 (229)
..+.++.+.+|.+ ..+++.+++.+
T Consensus 74 ~~~~~i~~v~q~~~~~~~~t~~~~~~~ 100 (243)
T TIGR01978 74 RARAGLFLAFQYPEEIPGVSNLEFLRS 100 (243)
T ss_pred hhccceEeeeccccccCCcCHHHHHHH
Confidence 1233344444433 33667777654
No 181
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1.1e-21 Score=170.72 Aligned_cols=93 Identities=19% Similarity=0.233 Sum_probs=72.1
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH-----HH
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK-----EA 150 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~-----~~ 150 (229)
+|+++||++.|++.. .+++++||+|.+||+++|+|+||||||||+++|+|+++ |++|. .++|.++. ..
T Consensus 1 ~l~~~~l~~~~~~~~---~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 74 (275)
T PRK13639 1 ILETRDLKYSYPDGT---EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK---PTSGEVLIKGEPIKYDKKSLL 74 (275)
T ss_pred CEEEEEEEEEeCCCC---eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEECccccchHH
Confidence 488999999996421 27999999999999999999999999999999999999 99997 88887642 11
Q ss_pred HhhcCCCcccCcc----hhhhHHHHHHcc
Q 027060 151 HARRGAPWTFNPL----LLLNCLKNLRNQ 175 (229)
Q Consensus 151 ~~~~~~~~~~~~~----~~~tv~e~l~~~ 175 (229)
..+..+.+.+|.+ ...++.+|+.++
T Consensus 75 ~~~~~i~~v~q~~~~~~~~~tv~e~i~~~ 103 (275)
T PRK13639 75 EVRKTVGIVFQNPDDQLFAPTVEEDVAFG 103 (275)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHH
Confidence 1233445555543 226899999764
No 182
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.85 E-value=2.1e-21 Score=167.11 Aligned_cols=145 Identities=15% Similarity=0.235 Sum_probs=95.8
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCC-----HH
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQD-----PK 148 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~-----~~ 148 (229)
.++|+++|+++.|++.. +|+++||+|.+|++++|+|+||||||||+++|+|+++ |++|. .++|.+ +.
T Consensus 4 ~~~l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~i~ 76 (258)
T PRK11701 4 QPLLSVRGLTKLYGPRK----GCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA---PDAGEVHYRMRDGQLRDLY 76 (258)
T ss_pred CceEEEeeeEEEcCCce----eeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCccccccccc
Confidence 34799999999998654 8999999999999999999999999999999999999 99997 888876 32
Q ss_pred H----H-H--hhcCCCcccCcch-----hhhHHHHHHcccc----------------------c-----c--CCCCCCCC
Q 027060 149 E----A-H--ARRGAPWTFNPLL-----LLNCLKNLRNQGS----------------------V-----Y--APSFDHGV 187 (229)
Q Consensus 149 ~----~-~--~~~~~~~~~~~~~-----~~tv~e~l~~~~~----------------------~-----~--~~~~~~~~ 187 (229)
. . . .+.++.+.+|... .+++.+|+.+... + . ...++.++
T Consensus 77 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq 156 (258)
T PRK11701 77 ALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGM 156 (258)
T ss_pred cCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHH
Confidence 1 1 1 1233444444431 1455555532100 0 0 01122334
Q ss_pred CCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHh
Q 027060 188 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 226 (229)
Q Consensus 188 ~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~ 226 (229)
.+++..+.++..++++|++|+|+..||......+.+++.
T Consensus 157 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~ 195 (258)
T PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLR 195 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 444444455555566666666666666666777777654
No 183
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1.4e-21 Score=173.68 Aligned_cols=100 Identities=16% Similarity=0.156 Sum_probs=75.5
Q ss_pred CCCCeEEEeeeeEEcCccc-cccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH--
Q 027060 73 REIPVVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK-- 148 (229)
Q Consensus 73 ~~~~~i~~~~ls~~y~~~~-~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~-- 148 (229)
.+.++|+++|+++.|++.. ....+|+|+||+|++|+++||+|+||||||||+++|+|+++ |++|. .++|.++.
T Consensus 17 ~~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~---p~~G~I~i~g~~~~~~ 93 (320)
T PRK13631 17 SDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK---SKYGTIQVGDIYIGDK 93 (320)
T ss_pred CCCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCEEcccc
Confidence 3456899999999997531 11238999999999999999999999999999999999999 99997 88875431
Q ss_pred -----------------HHHhhcCCCcccCcc----hhhhHHHHHHcc
Q 027060 149 -----------------EAHARRGAPWTFNPL----LLLNCLKNLRNQ 175 (229)
Q Consensus 149 -----------------~~~~~~~~~~~~~~~----~~~tv~e~l~~~ 175 (229)
....+..+.+.+|.+ ...|+.+|+.++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~ 141 (320)
T PRK13631 94 KNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFG 141 (320)
T ss_pred cccccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhh
Confidence 112233445555543 125899999775
No 184
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.85 E-value=9.5e-22 Score=170.26 Aligned_cols=149 Identities=17% Similarity=0.171 Sum_probs=95.8
Q ss_pred CeEEEeeeeEEcCccc-----cccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH
Q 027060 76 PVVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE 149 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~-----~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~ 149 (229)
++|+++||+++|+... ....+|+++||+|++|++++|+||||||||||+++|+|+++ |++|. .++|.++..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~ 79 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE---PTSGELLIDDHPLHF 79 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCC
Confidence 4799999999996321 01238999999999999999999999999999999999999 99997 888865421
Q ss_pred ---HHhhcCCCcccCcc-----hhhhHHHHHHcccccc-----------------------------CCCCCCCCCCchh
Q 027060 150 ---AHARRGAPWTFNPL-----LLLNCLKNLRNQGSVY-----------------------------APSFDHGVGDPVE 192 (229)
Q Consensus 150 ---~~~~~~~~~~~~~~-----~~~tv~e~l~~~~~~~-----------------------------~~~~~~~~~~~~~ 192 (229)
...+..+.+.+|.. ..+++.+++.+..... ...++.++.+++.
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~ 159 (267)
T PRK15112 80 GDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLG 159 (267)
T ss_pred CchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHH
Confidence 11122344444432 1245666654321110 0112233444444
Q ss_pred hhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 193 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 193 ~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
.+.++..++++|++|+|+..||...+..+.+++..
T Consensus 160 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 194 (267)
T PRK15112 160 LARALILRPKVIIADEALASLDMSMRSQLINLMLE 194 (267)
T ss_pred HHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 44445555556666666666666567777776654
No 185
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.2e-21 Score=167.81 Aligned_cols=93 Identities=19% Similarity=0.264 Sum_probs=72.0
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCC-----Cce-EecCCCHHH
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KAS-SFDSQDPKE 149 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~-----~G~-~~~g~~~~~ 149 (229)
.+|+++|+++.|++.. +|+++||+|.+||+++|+|+||||||||+++|+|+++ |+ +|. .++|.++..
T Consensus 3 ~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~g~~~~~ 75 (252)
T PRK14272 3 LLLSAQDVNIYYGDKQ----AVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHD---LTPGARVTGRILLDGQDIYG 75 (252)
T ss_pred EEEEEeeeEEEECCEE----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCcCCCCceeEEECCEEccc
Confidence 3699999999998654 8999999999999999999999999999999999987 64 786 888865421
Q ss_pred -----HHhhcCCCcccCcc---hhhhHHHHHHcc
Q 027060 150 -----AHARRGAPWTFNPL---LLLNCLKNLRNQ 175 (229)
Q Consensus 150 -----~~~~~~~~~~~~~~---~~~tv~e~l~~~ 175 (229)
...+.++.+.+|.. ...|+.+|+.++
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~ 109 (252)
T PRK14272 76 PRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAG 109 (252)
T ss_pred CccCHHHhhceeEEEeccCccCcCCCHHHHHHHH
Confidence 12233444444443 236888988753
No 186
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=7e-22 Score=167.54 Aligned_cols=143 Identities=18% Similarity=0.235 Sum_probs=102.3
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH-HhhcC
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA-HARRG 155 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~-~~~~~ 155 (229)
|+++|+++.|++.. +++++||+|.+|++++|+|+||||||||+++|+|+++ |..|. .++|+++... ..+..
T Consensus 1 l~~~~l~~~~~~~~----il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (232)
T cd03300 1 IELENVSKFYGGFV----ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET---PTSGEILLDGKDITNLPPHKRP 73 (232)
T ss_pred CEEEeEEEEeCCee----eeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCChhhcc
Confidence 46899999998754 8999999999999999999999999999999999999 99997 8888754321 11223
Q ss_pred CCcccCcch---hhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCCccEEE
Q 027060 156 APWTFNPLL---LLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQHKVVI 205 (229)
Q Consensus 156 ~~~~~~~~~---~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~~rvLi 205 (229)
+.+.++... .+++.+|+.+...... ..++.++.+++..+.++..++++++
T Consensus 74 i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~lll 153 (232)
T cd03300 74 VNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLL 153 (232)
T ss_pred eEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 444444332 3688888875321110 1122344555555566666777777
Q ss_pred ecCCeeeecccCHHHHHHHHhh
Q 027060 206 VDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 206 ~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+|+|+..||...++.+.+++..
T Consensus 154 lDEP~~gLD~~~~~~l~~~l~~ 175 (232)
T cd03300 154 LDEPLGALDLKLRKDMQLELKR 175 (232)
T ss_pred EcCCcccCCHHHHHHHHHHHHH
Confidence 7777777777788888887754
No 187
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1.4e-21 Score=165.59 Aligned_cols=142 Identities=19% Similarity=0.257 Sum_probs=97.8
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH-Hhhc
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA-HARR 154 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~-~~~~ 154 (229)
+|+++||++.|++. ..++||+|.+|+++||+|+||||||||+++|+|+++ |++|. .++|+++... ..+.
T Consensus 1 ~l~~~~l~~~~~~~------~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 71 (232)
T PRK10771 1 MLKLTDITWLYHHL------PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT---PASGSLTLNGQDHTTTPPSRR 71 (232)
T ss_pred CeEEEEEEEEECCc------cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCeecCcCChhhc
Confidence 48899999999753 238999999999999999999999999999999999 99997 8888764321 1123
Q ss_pred CCCcccCcc---hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCCccEE
Q 027060 155 GAPWTFNPL---LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQHKVV 204 (229)
Q Consensus 155 ~~~~~~~~~---~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~~rvL 204 (229)
.+.+.+|.. ..+++.+|+.++..... ..++.++.+++..+.++..+++++
T Consensus 72 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 151 (232)
T PRK10771 72 PVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPIL 151 (232)
T ss_pred cEEEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 344444433 33689999976421100 012233444444455555566666
Q ss_pred EecCCeeeecccCHHHHHHHHhh
Q 027060 205 IVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 205 i~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
++|+|+..||...++.+.+++..
T Consensus 152 lLDEP~~gLD~~~~~~~~~~l~~ 174 (232)
T PRK10771 152 LLDEPFSALDPALRQEMLTLVSQ 174 (232)
T ss_pred EEeCCcccCCHHHHHHHHHHHHH
Confidence 66666666666677777777654
No 188
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.2e-21 Score=183.31 Aligned_cols=93 Identities=20% Similarity=0.304 Sum_probs=75.1
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH----HH
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK----EA 150 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~----~~ 150 (229)
++|+++|+++.|++.. +|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|. .++|+++. ..
T Consensus 3 ~~l~~~~l~~~~~~~~----il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~i~~~~~~~ 75 (501)
T PRK11288 3 PYLSFDGIGKTFPGVK----ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ---PDAGSILIDGQEMRFASTTA 75 (501)
T ss_pred ceEEEeeeEEEECCEE----EEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCCCCHHH
Confidence 5799999999998754 8999999999999999999999999999999999999 99997 78886542 11
Q ss_pred HhhcCCCcccCcch---hhhHHHHHHcc
Q 027060 151 HARRGAPWTFNPLL---LLNCLKNLRNQ 175 (229)
Q Consensus 151 ~~~~~~~~~~~~~~---~~tv~e~l~~~ 175 (229)
..+..+.+.+|.+. .+|+.+|+.++
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~ 103 (501)
T PRK11288 76 ALAAGVAIIYQELHLVPEMTVAENLYLG 103 (501)
T ss_pred HHhCCEEEEEechhccCCCCHHHHHHhc
Confidence 22344555555432 37999999875
No 189
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.85 E-value=9.1e-22 Score=167.46 Aligned_cols=143 Identities=20% Similarity=0.295 Sum_probs=101.2
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH-HhhcC
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA-HARRG 155 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~-~~~~~ 155 (229)
|+++|+++.|++.. +|+++||+|.+|++++|+|+||||||||+++|+|+++ |++|. .++|.++... ..+..
T Consensus 1 i~i~~l~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~i~g~~~~~~~~~~~~ 73 (237)
T TIGR00968 1 IEIANISKRFGSFQ----ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ---PDSGRIRLNGQDATRVHARDRK 73 (237)
T ss_pred CEEEEEEEEECCee----eeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCChhhcC
Confidence 47899999998754 8999999999999999999999999999999999999 99997 8888764321 11233
Q ss_pred CCcccCcc---hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCCccEEE
Q 027060 156 APWTFNPL---LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQHKVVI 205 (229)
Q Consensus 156 ~~~~~~~~---~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~~rvLi 205 (229)
+.+.++.+ ...++.+|+.+...... ..++.++.+++..+.++..++++++
T Consensus 74 i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~lll 153 (237)
T TIGR00968 74 IGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLL 153 (237)
T ss_pred EEEEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 44444433 23688888875432110 0122344455555555566667777
Q ss_pred ecCCeeeecccCHHHHHHHHhh
Q 027060 206 VDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 206 ~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+|+|+..||...++.+.+++.+
T Consensus 154 lDEP~~~LD~~~~~~~~~~l~~ 175 (237)
T TIGR00968 154 LDEPFGALDAKVRKELRSWLRK 175 (237)
T ss_pred EcCCcccCCHHHHHHHHHHHHH
Confidence 7777777777778888877764
No 190
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1.6e-21 Score=170.71 Aligned_cols=96 Identities=11% Similarity=0.072 Sum_probs=72.7
Q ss_pred eEEEeeeeEEcCcccc-ccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH------
Q 027060 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK------ 148 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~-~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~------ 148 (229)
.|+++|+++.|++... ...+|+++||+|.+||+++|+|+||||||||+++|+|+++ |++|. .++|.++.
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 82 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII---SETGQTIVGDYAIPANLKKI 82 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEcccccccc
Confidence 5899999999976320 1237999999999999999999999999999999999999 99997 78886531
Q ss_pred --HHHhhcCCCcccCcc----hhhhHHHHHHcc
Q 027060 149 --EAHARRGAPWTFNPL----LLLNCLKNLRNQ 175 (229)
Q Consensus 149 --~~~~~~~~~~~~~~~----~~~tv~e~l~~~ 175 (229)
....+..+.+.+|.+ ...++.+|+.++
T Consensus 83 ~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~ 115 (289)
T PRK13645 83 KEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFG 115 (289)
T ss_pred ccHHHHhccEEEEEeCcchhhhhhHHHHHHHHH
Confidence 112233444555442 125889988764
No 191
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.85 E-value=2e-21 Score=167.03 Aligned_cols=137 Identities=18% Similarity=0.166 Sum_probs=93.2
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhh
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHAR 153 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~ 153 (229)
.++|+++||++.|++.. +|+++||+|.+|++++|+|+||||||||+++|+|+++ |++|. .+++..
T Consensus 2 ~~~l~~~~l~~~~~~~~----vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~~~~------- 67 (251)
T PRK09544 2 TSLVSLENVSVSFGQRR----VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA---PDEGVIKRNGKL------- 67 (251)
T ss_pred CcEEEEeceEEEECCce----EEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCcc-------
Confidence 35799999999998654 8999999999999999999999999999999999999 99997 666521
Q ss_pred cCCCcccCcc---hh--hhHHHHHHcccc------------------c--cCCCCCCCCCCchhhhhhccCCccEEEecC
Q 027060 154 RGAPWTFNPL---LL--LNCLKNLRNQGS------------------V--YAPSFDHGVGDPVEDDILVGLQHKVVIVDG 208 (229)
Q Consensus 154 ~~~~~~~~~~---~~--~tv~e~l~~~~~------------------~--~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~ 208 (229)
.+.+.+|.. .. .++.+++.+... . ....++.++.+++..+.++..+++++++|+
T Consensus 68 -~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDE 146 (251)
T PRK09544 68 -RIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDE 146 (251)
T ss_pred -CEEEeccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 122222221 11 244454432110 0 011233455555555555666666677777
Q ss_pred CeeeecccCHHHHHHHHh
Q 027060 209 NYLFLDGGVWKDVSSMFD 226 (229)
Q Consensus 209 ~~LlLDEP~~~~l~~~l~ 226 (229)
|+..||...+..+.+++.
T Consensus 147 Pt~~LD~~~~~~l~~~L~ 164 (251)
T PRK09544 147 PTQGVDVNGQVALYDLID 164 (251)
T ss_pred CCcCCCHHHHHHHHHHHH
Confidence 777777667777777664
No 192
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.85 E-value=1.6e-21 Score=181.96 Aligned_cols=143 Identities=9% Similarity=0.003 Sum_probs=101.0
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH-----H
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK-----E 149 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~-----~ 149 (229)
.+|+++|+++.|++.. +|+++||+|.+|++++|+||||||||||+|+|+|+++ |++|. .++|.++. .
T Consensus 2 ~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~---p~~G~i~~~~~~~~~~~~~~ 74 (490)
T PRK10938 2 SSLQISQGTFRLSDTK----TLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP---LLSGERQSQFSHITRLSFEQ 74 (490)
T ss_pred ceEEEEeEEEEcCCee----ecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCceEEECCcccccCCHHH
Confidence 3799999999998654 8999999999999999999999999999999999999 99997 77776431 1
Q ss_pred HHhhcCCCcccCcch-----------hhhHHHHHHcccc-------------------ccCCCCCCCCCCchhhhhhccC
Q 027060 150 AHARRGAPWTFNPLL-----------LLNCLKNLRNQGS-------------------VYAPSFDHGVGDPVEDDILVGL 199 (229)
Q Consensus 150 ~~~~~~~~~~~~~~~-----------~~tv~e~l~~~~~-------------------~~~~~~~~~~~~~~~~~l~~~~ 199 (229)
.....+ +.+|.+. .+++.+++.+... .....++.++.+++..+.++..
T Consensus 75 ~~~~i~--~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~ 152 (490)
T PRK10938 75 LQKLVS--DEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMS 152 (490)
T ss_pred HHHHhc--eeccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 122233 2232211 2466665532100 0112344566666666666767
Q ss_pred CccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 200 ~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
++++|++|||+..||...++.+.+++..
T Consensus 153 ~p~lllLDEPt~~LD~~~~~~l~~~l~~ 180 (490)
T PRK10938 153 EPDLLILDEPFDGLDVASRQQLAELLAS 180 (490)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 7777777777777777778888887764
No 193
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.85 E-value=1.8e-21 Score=168.69 Aligned_cols=150 Identities=19% Similarity=0.200 Sum_probs=97.7
Q ss_pred CCeEEEeeeeEEcCcc-----ccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH
Q 027060 75 IPVVEARCMDEVYDAL-----AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK 148 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~-----~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~ 148 (229)
|++|+++||++.|++. .....+|+|+||+|.+|++++|+|+||||||||+++|+|+++ |++|. .++|.++.
T Consensus 1 ~~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~sG~i~~~g~~~~ 77 (268)
T PRK10419 1 MTLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES---PSQGNVSWRGEPLA 77 (268)
T ss_pred CceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecc
Confidence 4579999999999730 001137999999999999999999999999999999999999 99997 88887542
Q ss_pred H------HHhhcCCCcccCcc-----hhhhHHHHHHcccc----------------------c-------cCCCCCCCCC
Q 027060 149 E------AHARRGAPWTFNPL-----LLLNCLKNLRNQGS----------------------V-------YAPSFDHGVG 188 (229)
Q Consensus 149 ~------~~~~~~~~~~~~~~-----~~~tv~e~l~~~~~----------------------~-------~~~~~~~~~~ 188 (229)
. ...+..+.+.+|.. ...++.+++.+... + ....++.++.
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~ 157 (268)
T PRK10419 78 KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQL 157 (268)
T ss_pred ccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHH
Confidence 1 11233444444443 12566666542110 0 0011233444
Q ss_pred CchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 189 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 189 ~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+++..+.++..++++|++|+|+..||...+..+.+++..
T Consensus 158 qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~ 196 (268)
T PRK10419 158 QRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKK 196 (268)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHH
Confidence 454555555555666666666666666667777777653
No 194
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1.6e-21 Score=173.68 Aligned_cols=153 Identities=16% Similarity=0.216 Sum_probs=97.2
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhccc-CCCCce-EecCCCHH----
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI-WPQKAS-SFDSQDPK---- 148 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~-~p~~G~-~~~g~~~~---- 148 (229)
|.+|+++||++.|+.......+|+||||+|.+||++||+|+||||||||+++|+|+++.. .+++|. .++|+++.
T Consensus 1 m~~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~ 80 (326)
T PRK11022 1 MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE 80 (326)
T ss_pred CceEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCH
Confidence 357999999999976422244899999999999999999999999999999999998610 127886 88887642
Q ss_pred -HHH--hhcCCCcccCcc-----hhhhHHHHHHccccc-------------------------------cCCCCCCCCCC
Q 027060 149 -EAH--ARRGAPWTFNPL-----LLLNCLKNLRNQGSV-------------------------------YAPSFDHGVGD 189 (229)
Q Consensus 149 -~~~--~~~~~~~~~~~~-----~~~tv~e~l~~~~~~-------------------------------~~~~~~~~~~~ 189 (229)
... ++..+.+.||.+ +.+++.+++...... +...++.++.+
T Consensus 81 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~Q 160 (326)
T PRK11022 81 KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ 160 (326)
T ss_pred HHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHH
Confidence 111 112355555553 224554443321110 00122334445
Q ss_pred chhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 190 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 190 ~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
++..+.++..++++|++|+++..||...+.++.+++..
T Consensus 161 Rv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~ 198 (326)
T PRK11022 161 RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLE 198 (326)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 55555555555555555555555555567777776654
No 195
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.85 E-value=2.8e-21 Score=186.46 Aligned_cols=146 Identities=17% Similarity=0.155 Sum_probs=114.1
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA 152 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~ 152 (229)
-|+++||+++|+... + .+|+|+|++|++||++||+|+||||||||+|+|.|++. |++|. .++|.++.. ...
T Consensus 471 ~I~~~nvsf~y~~~~-~-~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~---p~~G~I~~dg~dl~~i~~~~l 545 (709)
T COG2274 471 EIEFENVSFRYGPDD-P-PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK---PQQGRILLDGVDLNDIDLASL 545 (709)
T ss_pred eEEEEEEEEEeCCCC-c-chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEeHHhcCHHHH
Confidence 599999999998763 2 48999999999999999999999999999999999999 99997 999997543 233
Q ss_pred hcCCCcccCcchh--hhHHHHHHccccccC--------------------------------CCCCCCCCCchhhhhhcc
Q 027060 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA--------------------------------PSFDHGVGDPVEDDILVG 198 (229)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~--------------------------------~~~~~~~~~~~~~~l~~~ 198 (229)
|+.++++.|+..+ -|+.||+.++..... ...+.|++|+...++++.
T Consensus 546 R~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl 625 (709)
T COG2274 546 RRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALL 625 (709)
T ss_pred HhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhc
Confidence 4555555555544 789999998643211 123456677777777777
Q ss_pred CCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 199 ~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
.+++||++||.+--||+.+.+.+.+-+..
T Consensus 626 ~~P~ILlLDEaTSaLD~~sE~~I~~~L~~ 654 (709)
T COG2274 626 SKPKILLLDEATSALDPETEAIILQNLLQ 654 (709)
T ss_pred cCCCEEEEeCcccccCHhHHHHHHHHHHH
Confidence 78888888888888888888888777654
No 196
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=2.1e-21 Score=168.21 Aligned_cols=148 Identities=14% Similarity=0.152 Sum_probs=99.3
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---H
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---A 150 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~ 150 (229)
.++|+++|+++.|++.. ..+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|. .++|.++.. .
T Consensus 5 ~~~l~i~~l~~~~~~~~--~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~ 79 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDA--SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK---VKSGEIFYNNQAITDDNFE 79 (269)
T ss_pred CceEEEEEEEEEcCCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCHH
Confidence 34799999999997531 127899999999999999999999999999999999999 99997 888875421 1
Q ss_pred HhhcCCCcccCcc----hhhhHHHHHHcccccc---------------------------CCCCCCCCCCchhhhhhccC
Q 027060 151 HARRGAPWTFNPL----LLLNCLKNLRNQGSVY---------------------------APSFDHGVGDPVEDDILVGL 199 (229)
Q Consensus 151 ~~~~~~~~~~~~~----~~~tv~e~l~~~~~~~---------------------------~~~~~~~~~~~~~~~l~~~~ 199 (229)
..+..+.+.+|.+ ...++.+|+.+..... ...++.++.+++..+.++..
T Consensus 80 ~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 159 (269)
T PRK13648 80 KLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLAL 159 (269)
T ss_pred HHHhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 2233444444443 1256677765532110 00122344445444555555
Q ss_pred CccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 200 ~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+++++++|+|+..||....+.+.+++..
T Consensus 160 ~p~lllLDEPt~~LD~~~~~~l~~~L~~ 187 (269)
T PRK13648 160 NPSVIILDEATSMLDPDARQNLLDLVRK 187 (269)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 5666666666666666667777776653
No 197
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=2.5e-21 Score=167.53 Aligned_cols=98 Identities=16% Similarity=0.272 Sum_probs=72.7
Q ss_pred CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhccc--CCCCce-EecCCCHHH-
Q 027060 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQDPKE- 149 (229)
Q Consensus 74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~--~p~~G~-~~~g~~~~~- 149 (229)
..++|+++|+++.|++.. +|+++||+|.+||+++|+|+||||||||+++|+|++... .|++|. .++|+++..
T Consensus 18 ~~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 93 (268)
T PRK14248 18 KEHILEVKDLSIYYGEKR----AVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDS 93 (268)
T ss_pred CCceEEEEEEEEEeCCce----eeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccc
Confidence 445799999999998654 899999999999999999999999999999999985200 147897 888876421
Q ss_pred ----HHhhcCCCcccCcchh--hhHHHHHHcc
Q 027060 150 ----AHARRGAPWTFNPLLL--LNCLKNLRNQ 175 (229)
Q Consensus 150 ----~~~~~~~~~~~~~~~~--~tv~e~l~~~ 175 (229)
...+.++.+.+|...+ .++.+|+.++
T Consensus 94 ~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~ 125 (268)
T PRK14248 94 NINVVNLRREIGMVFQKPNPFPKSIYNNITHA 125 (268)
T ss_pred cccHHHHhccEEEEecCCccCcccHHHHHHHH
Confidence 1223344444444322 4888888754
No 198
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=2.3e-21 Score=167.59 Aligned_cols=96 Identities=18% Similarity=0.270 Sum_probs=71.4
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhccc--CCCCce-EecCCCHH----
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQDPK---- 148 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~--~p~~G~-~~~g~~~~---- 148 (229)
++|+++||++.|++.. +|+|+||+|++||+++|+|+||||||||+++|+|++... .|++|. .++|.++.
T Consensus 9 ~~l~i~~v~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 84 (264)
T PRK14243 9 TVLRTENLNVYYGSFL----AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDV 84 (264)
T ss_pred eEEEEeeeEEEECCEE----EeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccccc
Confidence 4799999999998654 799999999999999999999999999999999987510 026896 88886542
Q ss_pred -HHHhhcCCCcccCcchh--hhHHHHHHcc
Q 027060 149 -EAHARRGAPWTFNPLLL--LNCLKNLRNQ 175 (229)
Q Consensus 149 -~~~~~~~~~~~~~~~~~--~tv~e~l~~~ 175 (229)
....+..+.+.+|...+ .++.+|+.++
T Consensus 85 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~ 114 (264)
T PRK14243 85 DPVEVRRRIGMVFQKPNPFPKSIYDNIAYG 114 (264)
T ss_pred ChHHHhhhEEEEccCCccccccHHHHHHhh
Confidence 11122334444443221 4888988764
No 199
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.85 E-value=1.9e-21 Score=168.12 Aligned_cols=95 Identities=25% Similarity=0.332 Sum_probs=71.2
Q ss_pred eEEEeeeeEEcCccc-----cccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-
Q 027060 77 VVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE- 149 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~-----~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~- 149 (229)
+|+++||++.|++.. ....+|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|. .++|.++..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~ 78 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK---PAQGTVSFRGQDLYQL 78 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccc
Confidence 589999999996310 01238999999999999999999999999999999999999 99997 888875421
Q ss_pred -----HHhhcCCCcccCcc-----hhhhHHHHHHc
Q 027060 150 -----AHARRGAPWTFNPL-----LLLNCLKNLRN 174 (229)
Q Consensus 150 -----~~~~~~~~~~~~~~-----~~~tv~e~l~~ 174 (229)
...+..+.+.+|.. ..+++.+|+.+
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~ 113 (265)
T TIGR02769 79 DRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGE 113 (265)
T ss_pred CHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHH
Confidence 11223345555542 22688888754
No 200
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.85 E-value=3e-21 Score=160.83 Aligned_cols=147 Identities=16% Similarity=0.127 Sum_probs=101.0
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HH
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AH 151 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~ 151 (229)
..|+++++++.|++.. ..+|+++||+|.+|++++|+|+||||||||+++|+|+++ |++|. .++|.++.. ..
T Consensus 5 ~~l~~~~l~~~~~~~~--~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 79 (207)
T cd03369 5 GEIEVENLSVRYAPDL--PPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE---AEEGKIEIDGIDISTIPLED 79 (207)
T ss_pred CeEEEEEEEEEeCCCC--cccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCeEEECCEEhHHCCHHH
Confidence 3589999999997531 127999999999999999999999999999999999999 99997 888876432 11
Q ss_pred hhcCCCcccCcchh--hhHHHHHHcccccc-------------CCCCCCCCCCchhhhhhccCCccEEEecCCeeeeccc
Q 027060 152 ARRGAPWTFNPLLL--LNCLKNLRNQGSVY-------------APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG 216 (229)
Q Consensus 152 ~~~~~~~~~~~~~~--~tv~e~l~~~~~~~-------------~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP 216 (229)
.+..+.+.+|.+.+ .++.+|+.+..... ...++.++.+++..+.++..+++++++|+++..||..
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~ 159 (207)
T cd03369 80 LRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYA 159 (207)
T ss_pred HHhhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHH
Confidence 23344444444322 58889886532110 1122334445555555555566666666666666666
Q ss_pred CHHHHHHHHhh
Q 027060 217 VWKDVSSMFDE 227 (229)
Q Consensus 217 ~~~~l~~~l~~ 227 (229)
.+..+.+++..
T Consensus 160 ~~~~l~~~l~~ 170 (207)
T cd03369 160 TDALIQKTIRE 170 (207)
T ss_pred HHHHHHHHHHH
Confidence 67777777654
No 201
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.85 E-value=2.3e-21 Score=168.61 Aligned_cols=92 Identities=14% Similarity=0.127 Sum_probs=71.4
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCC--------Cce-EecCCCH
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ--------KAS-SFDSQDP 147 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~--------~G~-~~~g~~~ 147 (229)
+|+++|+++.|++.. +|+++||+|.+|++++|+|+||||||||+++|+|+++ |+ +|. .++|.++
T Consensus 1 ml~~~nl~~~~~~~~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~---p~~~~~~~~~~G~i~~~g~~~ 73 (272)
T PRK13547 1 MLTADHLHVARRHRA----ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT---GGGAPRGARVTGDVTLNGEPL 73 (272)
T ss_pred CeEEEEEEEEECCEe----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CcccccccCCceEEEECCEEc
Confidence 489999999998754 8999999999999999999999999999999999998 87 886 8888754
Q ss_pred HH---HHhhcCCCcccCcc---hhhhHHHHHHcc
Q 027060 148 KE---AHARRGAPWTFNPL---LLLNCLKNLRNQ 175 (229)
Q Consensus 148 ~~---~~~~~~~~~~~~~~---~~~tv~e~l~~~ 175 (229)
.. ...+..+.+.+|.. ..+|+.+|+.++
T Consensus 74 ~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~ 107 (272)
T PRK13547 74 AAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLG 107 (272)
T ss_pred ccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhc
Confidence 21 11122233333332 237899999774
No 202
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=4.4e-21 Score=181.20 Aligned_cols=147 Identities=20% Similarity=0.188 Sum_probs=116.4
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA 152 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~ 152 (229)
.|+++||++.|+.++ .+.+|+|+||+|++||++|||||||+||||+..+|..++. |++|. .+||.++.+ ...
T Consensus 465 ~IeF~~VsFaYP~Rp-~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~---PtsG~IllDG~~i~~~~~~~l 540 (716)
T KOG0058|consen 465 VIEFEDVSFAYPTRP-DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD---PTSGRILLDGVPISDINHKYL 540 (716)
T ss_pred eEEEEEeeeecCCCC-CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCCeEEECCeehhhcCHHHH
Confidence 699999999999874 5568999999999999999999999999999999999999 99997 999998654 223
Q ss_pred hcCCCcccCcchh--hhHHHHHHcccccc--------------------------------CCCCCCCCCCchhhhhhcc
Q 027060 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVY--------------------------------APSFDHGVGDPVEDDILVG 198 (229)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~--------------------------------~~~~~~~~~~~~~~~l~~~ 198 (229)
+..++.+-|.+-+ -|+.|||.++.... ....+.+++||.+.++++.
T Consensus 541 r~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALl 620 (716)
T KOG0058|consen 541 RRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALL 620 (716)
T ss_pred HHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHh
Confidence 3344444444433 68999999985411 0122356778888888888
Q ss_pred CCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 199 ~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
.+++|||+||-+--||......+.+.++.
T Consensus 621 r~P~VLILDEATSALDaeSE~lVq~aL~~ 649 (716)
T KOG0058|consen 621 RNPRVLILDEATSALDAESEYLVQEALDR 649 (716)
T ss_pred cCCCEEEEechhhhcchhhHHHHHHHHHH
Confidence 88888888888888888888888877763
No 203
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=2.4e-21 Score=169.43 Aligned_cols=98 Identities=20% Similarity=0.281 Sum_probs=72.9
Q ss_pred CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhccc--CCCCce-EecCCCHHH-
Q 027060 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQDPKE- 149 (229)
Q Consensus 74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~--~p~~G~-~~~g~~~~~- 149 (229)
+.++|+++|+++.|++.. +|+|+||+|.+||+++|+|+||||||||+++|+|+++.. .|++|. .++|.++..
T Consensus 36 ~~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~ 111 (286)
T PRK14275 36 GKPHVVAKNFSIYYGEFE----AVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGK 111 (286)
T ss_pred CceEEEEeeeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhc
Confidence 445799999999998654 799999999999999999999999999999999985210 138897 888876431
Q ss_pred ----HHhhcCCCcccCcchh--hhHHHHHHcc
Q 027060 150 ----AHARRGAPWTFNPLLL--LNCLKNLRNQ 175 (229)
Q Consensus 150 ----~~~~~~~~~~~~~~~~--~tv~e~l~~~ 175 (229)
...+..+.+.+|.+.+ .++.+|+.++
T Consensus 112 ~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~ 143 (286)
T PRK14275 112 FTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYG 143 (286)
T ss_pred ccchHHhhhcEEEECCCCCCCccCHHHHHHhH
Confidence 1123344444444322 4889998764
No 204
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.85 E-value=2.2e-21 Score=161.29 Aligned_cols=64 Identities=20% Similarity=0.318 Sum_probs=55.6
Q ss_pred EEEeeeeEEcCcccc-ccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecC
Q 027060 78 VEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS 144 (229)
Q Consensus 78 i~~~~ls~~y~~~~~-~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g 144 (229)
|+++||++.|++... ...+|+++||+|++|++++|+||||||||||+++|+|+++ |++|. .++|
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~---~~~G~i~~~g 66 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE---KLSGSVSVPG 66 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC---CCCCeEEEcC
Confidence 478999999976410 0128999999999999999999999999999999999999 99997 7776
No 205
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.85 E-value=1.6e-21 Score=163.26 Aligned_cols=141 Identities=19% Similarity=0.203 Sum_probs=96.2
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH-HhhcC
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA-HARRG 155 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~-~~~~~ 155 (229)
++++||++.|+. .+.++||+|.+|++++|+||||||||||+++|+|+++ |++|. .++|.++... ..+..
T Consensus 1 ~~~~~l~~~~~~------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 71 (213)
T TIGR01277 1 LALDKVRYEYEH------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE---PASGSIKVNDQSHTGLAPYQRP 71 (213)
T ss_pred CeEEeeeEEeCC------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEcccCChhccc
Confidence 468999999973 3569999999999999999999999999999999999 99997 8888764321 11233
Q ss_pred CCcccCcc---hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCCccEEE
Q 027060 156 APWTFNPL---LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQHKVVI 205 (229)
Q Consensus 156 ~~~~~~~~---~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~~rvLi 205 (229)
+.+.+|.+ ..+|+.+|+.+...... ..++.++.+++..+.++..++++++
T Consensus 72 i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll 151 (213)
T TIGR01277 72 VSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILL 151 (213)
T ss_pred eEEEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 44444443 23689999875321100 0122334444444555555566666
Q ss_pred ecCCeeeecccCHHHHHHHHhh
Q 027060 206 VDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 206 ~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+|+|+..||...+..+.+++..
T Consensus 152 lDEPt~~LD~~~~~~~~~~l~~ 173 (213)
T TIGR01277 152 LDEPFSALDPLLREEMLALVKQ 173 (213)
T ss_pred EcCCCccCCHHHHHHHHHHHHH
Confidence 6666666666677777777654
No 206
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.6e-21 Score=175.22 Aligned_cols=141 Identities=16% Similarity=0.192 Sum_probs=96.7
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH------
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE------ 149 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~------ 149 (229)
||++ ||+|.|++.. + |+||+|++||+++|+||||||||||+++|+|+++ |++|. .++|+++..
T Consensus 1 ~l~~-~l~k~~~~~~----~--~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~---p~~G~I~~~g~~~~~~~~~~~ 70 (352)
T PRK11144 1 MLEL-NFKQQLGDLC----L--TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR---PQKGRIVLNGRVLFDAEKGIC 70 (352)
T ss_pred CeEE-EEEEEeCCEE----E--EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccccccc
Confidence 3778 9999998642 3 8999999999999999999999999999999999 99997 888865421
Q ss_pred -HHhhcCCCcccCcc---hhhhHHHHHHcccccc---------------------CCCCCCCCCCchhhhhhccCCccEE
Q 027060 150 -AHARRGAPWTFNPL---LLLNCLKNLRNQGSVY---------------------APSFDHGVGDPVEDDILVGLQHKVV 204 (229)
Q Consensus 150 -~~~~~~~~~~~~~~---~~~tv~e~l~~~~~~~---------------------~~~~~~~~~~~~~~~l~~~~~~rvL 204 (229)
...+..+.+.+|.+ +.+|+.+|+.++.... ...++.++.+++..+.++..++++|
T Consensus 71 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~ll 150 (352)
T PRK11144 71 LPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELL 150 (352)
T ss_pred cchhhCCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 11233444555543 3479999998753210 0012234445555555555556666
Q ss_pred EecCCeeeecccCHHHHHHHHhh
Q 027060 205 IVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 205 i~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
++|+|+..||...+..+++++..
T Consensus 151 LLDEPts~LD~~~~~~l~~~L~~ 173 (352)
T PRK11144 151 LMDEPLASLDLPRKRELLPYLER 173 (352)
T ss_pred EEcCCcccCCHHHHHHHHHHHHH
Confidence 66666666666667777776653
No 207
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=2.4e-21 Score=165.61 Aligned_cols=95 Identities=18% Similarity=0.248 Sum_probs=71.6
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA 152 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~ 152 (229)
+|+++|+++.|++.. +|+|+||+|.+||+++|+|+||||||||+++|+|+++...|++|. .++|+++.. ...
T Consensus 2 ~~~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~ 77 (246)
T PRK14269 2 IAKTTNLNLFYGKKQ----ALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL 77 (246)
T ss_pred ceeeeeeEEEECCEe----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHH
Confidence 588999999998654 899999999999999999999999999999999997411168997 888876421 122
Q ss_pred hcCCCcccCcch--hhhHHHHHHcc
Q 027060 153 RRGAPWTFNPLL--LLNCLKNLRNQ 175 (229)
Q Consensus 153 ~~~~~~~~~~~~--~~tv~e~l~~~ 175 (229)
+..+.+.+|.+. ..|+.+|+.++
T Consensus 78 ~~~i~~~~q~~~l~~~tv~eni~~~ 102 (246)
T PRK14269 78 RKNVGMVFQQPNVFVKSIYENISYA 102 (246)
T ss_pred hhhEEEEecCCccccccHHHHhhhH
Confidence 233444443322 26899998764
No 208
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=2.7e-21 Score=169.10 Aligned_cols=98 Identities=19% Similarity=0.268 Sum_probs=72.6
Q ss_pred CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhccc--CCCCce-EecCCCHHH-
Q 027060 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQDPKE- 149 (229)
Q Consensus 74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~--~p~~G~-~~~g~~~~~- 149 (229)
+.++|+++||++.|++.. +|+++||+|.+||+++|+|+||||||||+++|+|+++.. .|++|. .++|.++..
T Consensus 36 ~~~~l~i~~l~~~~~~~~----il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~ 111 (285)
T PRK14254 36 GETVIEARDLNVFYGDEQ----ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDA 111 (285)
T ss_pred CCceEEEEEEEEEECCEe----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccc
Confidence 556899999999998654 899999999999999999999999999999999998510 147897 888875421
Q ss_pred ----HHhhcCCCcccCcchh--hhHHHHHHcc
Q 027060 150 ----AHARRGAPWTFNPLLL--LNCLKNLRNQ 175 (229)
Q Consensus 150 ----~~~~~~~~~~~~~~~~--~tv~e~l~~~ 175 (229)
...+..+.+.+|...+ .++.+|+.+.
T Consensus 112 ~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~ 143 (285)
T PRK14254 112 DVDPVALRRRIGMVFQKPNPFPKSIYDNVAYG 143 (285)
T ss_pred ccchHhhhccEEEEecCCccCcCCHHHHHHHH
Confidence 1122334444443221 4788888653
No 209
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=3.7e-21 Score=165.75 Aligned_cols=94 Identities=18% Similarity=0.302 Sum_probs=72.2
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC-----CCce-EecCCCHH
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQDPK 148 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p-----~~G~-~~~g~~~~ 148 (229)
+.+|+++|+++.|++.. +|+++||+|.+||+++|+|+||||||||+++|+|+++ | ++|. .++|+++.
T Consensus 5 ~~~l~~~~l~~~~~~~~----il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~---~~~~~~~~G~i~~~g~~i~ 77 (259)
T PRK14260 5 IPAIKVKDLSFYYNTSK----AIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISE---LEGPVKVEGVVDFFGQNIY 77 (259)
T ss_pred cceEEEEEEEEEECCeE----eecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcC---cccCCccceEEEECCEecc
Confidence 45799999999998654 8999999999999999999999999999999999987 5 4796 88887542
Q ss_pred H-----HHhhcCCCcccCcch--hhhHHHHHHcc
Q 027060 149 E-----AHARRGAPWTFNPLL--LLNCLKNLRNQ 175 (229)
Q Consensus 149 ~-----~~~~~~~~~~~~~~~--~~tv~e~l~~~ 175 (229)
. ...+.++.+.+|... ..|+.+|+.++
T Consensus 78 ~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~ 111 (259)
T PRK14260 78 DPRININRLRRQIGMVFQRPNPFPMSIYENVAYG 111 (259)
T ss_pred ccccchHhhhhheEEEecccccCCccHHHHHHHH
Confidence 1 112233444444432 27888988754
No 210
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.85 E-value=2.1e-21 Score=168.48 Aligned_cols=144 Identities=15% Similarity=0.084 Sum_probs=96.2
Q ss_pred eEEEeeeeEEcCc-cccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhc
Q 027060 77 VVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARR 154 (229)
Q Consensus 77 ~i~~~~ls~~y~~-~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~ 154 (229)
+|+++|+++.|++ .. +|+|+||+|.+|++++|+||||||||||+++|+|+++ |++|. .++|.++.....+.
T Consensus 6 ~l~~~~l~~~~~~~~~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 78 (272)
T PRK15056 6 GIVVNDVTVTWRNGHT----ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR---LASGKISILGQPTRQALQKN 78 (272)
T ss_pred eEEEEeEEEEecCCcE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEhHHhhccc
Confidence 5999999999963 33 7999999999999999999999999999999999999 99997 88887754322222
Q ss_pred CCCcccCcch-----hhhHHHHHHcccc-------------------------c------cCCCCCCCCCCchhhhhhcc
Q 027060 155 GAPWTFNPLL-----LLNCLKNLRNQGS-------------------------V------YAPSFDHGVGDPVEDDILVG 198 (229)
Q Consensus 155 ~~~~~~~~~~-----~~tv~e~l~~~~~-------------------------~------~~~~~~~~~~~~~~~~l~~~ 198 (229)
.+.+.+|.+. ..++.+++.++.. + ....++.++.+++..+.++.
T Consensus 79 ~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~ 158 (272)
T PRK15056 79 LVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIA 158 (272)
T ss_pred eEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 2333333321 1234444432100 0 00112334445555555555
Q ss_pred CCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 199 ~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
.+++++++|+|+..||...++.+.+++..
T Consensus 159 ~~p~llllDEPt~~LD~~~~~~l~~~L~~ 187 (272)
T PRK15056 159 QQGQVILLDEPFTGVDVKTEARIISLLRE 187 (272)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 56666666666666666678888877754
No 211
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=2.8e-21 Score=167.76 Aligned_cols=149 Identities=14% Similarity=0.168 Sum_probs=97.2
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc--ccCCCCce-EecCCCHHH--
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKAS-SFDSQDPKE-- 149 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~--~~~p~~G~-~~~g~~~~~-- 149 (229)
.++|+++|+++.|++.. +|+++||+|.+||+++|+|+||||||||+++|+|+++ ...|++|. .++|.++..
T Consensus 22 ~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 97 (271)
T PRK14238 22 KVVFDTQNLNLWYGEDH----ALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKS 97 (271)
T ss_pred ceEEEEeeeEEEECCcc----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccc
Confidence 45799999999998654 8999999999999999999999999999999999985 11248897 888865421
Q ss_pred ---HHhhcCCCcccCcch--hhhHHHHHHccccccC--------------------------------CCCCCCCCCchh
Q 027060 150 ---AHARRGAPWTFNPLL--LLNCLKNLRNQGSVYA--------------------------------PSFDHGVGDPVE 192 (229)
Q Consensus 150 ---~~~~~~~~~~~~~~~--~~tv~e~l~~~~~~~~--------------------------------~~~~~~~~~~~~ 192 (229)
...+..+.+.+|.+. ..++.+|+.++..... ..++.++.+++.
T Consensus 98 ~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~ 177 (271)
T PRK14238 98 YSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLC 177 (271)
T ss_pred ccHHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHH
Confidence 112233444444432 2588888875321100 001123333433
Q ss_pred hhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 193 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 193 ~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
.+.++..++++|++|+|+..||...+..+.+++..
T Consensus 178 laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 212 (271)
T PRK14238 178 IARCLAIEPDVILMDEPTSALDPISTLKVEELVQE 212 (271)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence 44444445555666666666665567777777654
No 212
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.84 E-value=2.4e-21 Score=166.13 Aligned_cols=145 Identities=14% Similarity=0.204 Sum_probs=96.4
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCC-----HHH
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQD-----PKE 149 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~-----~~~ 149 (229)
++|+++|+++.|++.. +|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|. .++|.+ +..
T Consensus 2 ~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~ 74 (253)
T TIGR02323 2 PLLQVSGLSKSYGGGK----GCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA---PDHGTATYIMRSGAELELYQ 74 (253)
T ss_pred ceEEEeeeEEEeCCce----EeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEEeccccccccccc
Confidence 4799999999998654 7999999999999999999999999999999999999 99997 788765 321
Q ss_pred ----HH---hhcCCCcccCcch-----hhhHHHHHHccc-----cc---------------c---------CCCCCCCCC
Q 027060 150 ----AH---ARRGAPWTFNPLL-----LLNCLKNLRNQG-----SV---------------Y---------APSFDHGVG 188 (229)
Q Consensus 150 ----~~---~~~~~~~~~~~~~-----~~tv~e~l~~~~-----~~---------------~---------~~~~~~~~~ 188 (229)
.. .+.++.+.+|... ..++.+|+.+.. .. . ...++.++.
T Consensus 75 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~ 154 (253)
T TIGR02323 75 LSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQ 154 (253)
T ss_pred CCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHH
Confidence 11 1233444444421 135555553210 00 0 001223444
Q ss_pred CchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 189 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 189 ~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+++..+.++..++++|++|+|+..||....+.+.+++..
T Consensus 155 qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~ 193 (253)
T TIGR02323 155 QRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRG 193 (253)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 555555555556666666666666666667777777653
No 213
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=7.4e-22 Score=171.18 Aligned_cols=142 Identities=18% Similarity=0.207 Sum_probs=94.6
Q ss_pred EEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----H--
Q 027060 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-----A-- 150 (229)
Q Consensus 79 ~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-----~-- 150 (229)
.++++++.|++.. +|+++||+|++|++++|+||||||||||+++|+|+++ |++|. .++|.++.. .
T Consensus 26 ~~~~~~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~---p~~G~i~i~g~~~~~~~~~~~~~ 98 (269)
T cd03294 26 SKEEILKKTGQTV----GVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE---PTSGKVLIDGQDIAAMSRKELRE 98 (269)
T ss_pred hhhhhhhhcCCce----EeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccChhhhhh
Confidence 4678999998765 8999999999999999999999999999999999999 99997 888875421 1
Q ss_pred HhhcCCCcccCcc---hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCC
Q 027060 151 HARRGAPWTFNPL---LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQ 200 (229)
Q Consensus 151 ~~~~~~~~~~~~~---~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~ 200 (229)
..+..+.+.+|.. ..+|+.+|+.++..... ..++.++.+++..+.++..+
T Consensus 99 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~ 178 (269)
T cd03294 99 LRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVD 178 (269)
T ss_pred hhcCcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 1122344444433 23689999876421110 01223334444444444455
Q ss_pred ccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 201 HKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 201 ~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+++|++|+|+..||...++.+.+++..
T Consensus 179 p~illLDEPt~~LD~~~~~~l~~~l~~ 205 (269)
T cd03294 179 PDILLMDEAFSALDPLIRREMQDELLR 205 (269)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 555555555555555567777776643
No 214
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=4.2e-21 Score=167.15 Aligned_cols=93 Identities=15% Similarity=0.211 Sum_probs=71.8
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC-----CCce-EecCCCHHH
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQDPKE 149 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p-----~~G~-~~~g~~~~~ 149 (229)
++|+++||++.|++.. +|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|. .++|.++..
T Consensus 20 ~~l~i~nl~~~~~~~~----il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---p~~~~~~~G~i~~~g~~i~~ 92 (276)
T PRK14271 20 PAMAAVNLTLGFAGKT----VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMND---KVSGYRYSGDVLLGGRSIFN 92 (276)
T ss_pred cEEEEeeEEEEECCEE----EeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCC---cCCCCCCceEEEECCEEccc
Confidence 4799999999998754 8999999999999999999999999999999999988 6 5886 888865421
Q ss_pred ----HHhhcCCCcccCcch--hhhHHHHHHcc
Q 027060 150 ----AHARRGAPWTFNPLL--LLNCLKNLRNQ 175 (229)
Q Consensus 150 ----~~~~~~~~~~~~~~~--~~tv~e~l~~~ 175 (229)
...+..+.+.+|.+. ..++.+|+.++
T Consensus 93 ~~~~~~~~~~i~~v~q~~~l~~~tv~eni~~~ 124 (276)
T PRK14271 93 YRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAG 124 (276)
T ss_pred cchhHHHhhheEEeccCCccCCccHHHHHHHH
Confidence 112233444444322 16899988764
No 215
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.84 E-value=2.3e-21 Score=153.33 Aligned_cols=114 Identities=18% Similarity=0.241 Sum_probs=95.0
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhcCC
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARRGA 156 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~~~ 156 (229)
|+++|+++.|++.. +++++||++++||+++|+|+||||||||+++|+|+++ |++|. .++|. ..+
T Consensus 1 l~~~~l~~~~~~~~----~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~--------~~i 65 (144)
T cd03221 1 IELENLSKTYGGKL----LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGST--------VKI 65 (144)
T ss_pred CEEEEEEEEECCce----EEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCe--------EEE
Confidence 46899999998653 7999999999999999999999999999999999999 99997 77763 122
Q ss_pred CcccCcchhhhHHHHHHccccccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 157 PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 157 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
.+.++ ++.++.+++..+.++..+++++++|+|+..||...+..+.+++..
T Consensus 66 ~~~~~---------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~ 115 (144)
T cd03221 66 GYFEQ---------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKE 115 (144)
T ss_pred EEEcc---------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 23332 667777888888888888899999999999998888888888753
No 216
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.84 E-value=4.6e-21 Score=180.32 Aligned_cols=94 Identities=21% Similarity=0.238 Sum_probs=78.3
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH--Hhh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA--HAR 153 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~--~~~ 153 (229)
.|+++||+++|++.. .+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|. .++|.++... ..+
T Consensus 334 ~I~~~~vsf~Y~~~~---~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~---p~~G~I~i~g~~i~~~~~~lr 407 (529)
T TIGR02868 334 TLELRDLSFGYPGSP---PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLD---PLQGEVTLDGVSVSSLQDELR 407 (529)
T ss_pred eEEEEEEEEecCCCC---ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhHHHHHH
Confidence 499999999997632 27999999999999999999999999999999999999 99997 8999875433 223
Q ss_pred cCCCcccCcchh--hhHHHHHHccc
Q 027060 154 RGAPWTFNPLLL--LNCLKNLRNQG 176 (229)
Q Consensus 154 ~~~~~~~~~~~~--~tv~e~l~~~~ 176 (229)
..+.+.+|.+.+ -|++||+.++.
T Consensus 408 ~~i~~V~Q~~~lF~~TI~eNI~~g~ 432 (529)
T TIGR02868 408 RRISVFAQDAHLFDTTVRDNLRLGR 432 (529)
T ss_pred hheEEEccCcccccccHHHHHhccC
Confidence 456666666654 69999999863
No 217
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=3.1e-21 Score=172.01 Aligned_cols=100 Identities=17% Similarity=0.233 Sum_probs=72.3
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhccc-CCCCce-EecCCCHH----
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI-WPQKAS-SFDSQDPK---- 148 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~-~p~~G~-~~~g~~~~---- 148 (229)
|++|+++||++.|+.......+|+||||+|.+||++||+|+||||||||+++|+|+++.. .+++|. .++|+++.
T Consensus 1 ~~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~ 80 (330)
T PRK15093 1 MPLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred CCeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCH
Confidence 458999999999953222234899999999999999999999999999999999998510 147896 88887542
Q ss_pred -HHH--hhcCCCcccCcch-----hhhHHHHHHc
Q 027060 149 -EAH--ARRGAPWTFNPLL-----LLNCLKNLRN 174 (229)
Q Consensus 149 -~~~--~~~~~~~~~~~~~-----~~tv~e~l~~ 174 (229)
... ++..+.+.||.+. .+++.+++.+
T Consensus 81 ~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~ 114 (330)
T PRK15093 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQ 114 (330)
T ss_pred HHHHHHhCCCEEEEecCcchhcCccccHHHHHHH
Confidence 111 1234556665542 3677777753
No 218
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.84 E-value=3.6e-21 Score=154.66 Aligned_cols=101 Identities=22% Similarity=0.272 Sum_probs=85.0
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH------
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE------ 149 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~------ 149 (229)
+|+++++++..+.....+.+|++|+|.|.+||.++||||+|||||||+-+++|+.. |++|+ ++.|++...
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~---~ssGeV~l~G~~L~~ldEd~r 82 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD---PSSGEVRLLGQPLHKLDEDAR 82 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC---CCCceEEEcCcchhhcCHHHH
Confidence 79999999999987778889999999999999999999999999999999999999 99997 899986321
Q ss_pred -HHhhcCCCcccCcchh---hhHHHHHHccccccC
Q 027060 150 -AHARRGAPWTFNPLLL---LNCLKNLRNQGSVYA 180 (229)
Q Consensus 150 -~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~ 180 (229)
..+...++++||.+.+ +|.+||+..+..+..
T Consensus 83 A~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~g 117 (228)
T COG4181 83 AALRARHVGFVFQSFHLIPNLTALENVALPLELRG 117 (228)
T ss_pred HHhhccceeEEEEeeeccccchhhhhccchhhhcC
Confidence 2233446777776654 999999998766543
No 219
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.84 E-value=2.6e-21 Score=163.04 Aligned_cols=148 Identities=17% Similarity=0.112 Sum_probs=100.4
Q ss_pred CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCC-----H
Q 027060 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQD-----P 147 (229)
Q Consensus 74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~-----~ 147 (229)
++++|+++||+..|+++. +|+|||++|++||..+|+|||||||||||++++|... |.+|. .+.|+. .
T Consensus 28 ~~~li~l~~v~v~r~gk~----iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~---pssg~~~~~G~~~G~~~~ 100 (257)
T COG1119 28 NEPLIELKNVSVRRNGKK----ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP---PSSGDVTLLGRRFGKGET 100 (257)
T ss_pred CcceEEecceEEEECCEe----eccccceeecCCCcEEEECCCCCCHHHHHHHHhcccC---CCCCceeeeeeeccCCcc
Confidence 557899999999999987 9999999999999999999999999999999999999 98886 666652 2
Q ss_pred -HHHHhhcCCCc--ccCcc-hhhhHHHHHHccccccC--------------------------------CCCCCCCCCch
Q 027060 148 -KEAHARRGAPW--TFNPL-LLLNCLKNLRNQGSVYA--------------------------------PSFDHGVGDPV 191 (229)
Q Consensus 148 -~~~~~~~~~~~--~~~~~-~~~tv~e~l~~~~~~~~--------------------------------~~~~~~~~~~~ 191 (229)
.+.+.++|+.. ..+.+ ...+++|-+..+..-.. ...+.++.+++
T Consensus 101 ~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrv 180 (257)
T COG1119 101 IFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRV 180 (257)
T ss_pred hHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHH
Confidence 44555666421 11111 11344444433221100 11223444555
Q ss_pred hhhhhccCCccEEEecCCeeeecccCHHHHHHHHhhh
Q 027060 192 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 228 (229)
Q Consensus 192 ~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~~ 228 (229)
..++++..++++||+|+++-+||-..+.++.+.++++
T Consensus 181 LiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~ 217 (257)
T COG1119 181 LIARALVKDPELLILDEPAQGLDLIAREQLLNRLEEL 217 (257)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHH
Confidence 5555555566666666666666666788888887764
No 220
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.84 E-value=4.2e-21 Score=155.53 Aligned_cols=141 Identities=20% Similarity=0.230 Sum_probs=97.1
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-HHhhc
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-AHARR 154 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-~~~~~ 154 (229)
+|.+++|.+.|+... . .++++|+.||+++|+||+||||||||++|+|++. |.+|+ .++|++... ....+
T Consensus 1 ~l~L~~V~~~y~~~~----~--~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~---P~~G~i~i~g~d~t~~~P~~R 71 (231)
T COG3840 1 MLALDDVRFSYGHLP----M--RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET---PASGEILINGVDHTASPPAER 71 (231)
T ss_pred CccccceEEeeCcce----E--EEEEeecCCcEEEEECCCCccHHHHHHHHHhccC---CCCceEEEcCeecCcCCcccC
Confidence 367899999998754 4 7889999999999999999999999999999999 99997 899987432 12223
Q ss_pred CCCcccCc---chhhhHHHHHHccccccCCCC---------------CCCCCCchhhhhhccCCccE-----EEecCCee
Q 027060 155 GAPWTFNP---LLLLNCLKNLRNQGSVYAPSF---------------DHGVGDPVEDDILVGLQHKV-----VIVDGNYL 211 (229)
Q Consensus 155 ~~~~~~~~---~~~~tv~e~l~~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~rv-----Li~d~~~L 211 (229)
-+.+.||. +..+||.+|+.++.......- -.+..++.+..++.|+++|+ ++.+-|++
T Consensus 72 PVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~Pil 151 (231)
T COG3840 72 PVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPIL 151 (231)
T ss_pred ChhhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeE
Confidence 34444444 445999999999865321100 01233455555555554443 56666666
Q ss_pred eeccc-------CHHHHHHHHh
Q 027060 212 FLDGG-------VWKDVSSMFD 226 (229)
Q Consensus 212 lLDEP-------~~~~l~~~l~ 226 (229)
+|||| -+.++..++.
T Consensus 152 LLDEPFsALdP~LR~eMl~Lv~ 173 (231)
T COG3840 152 LLDEPFSALDPALRAEMLALVS 173 (231)
T ss_pred EecCchhhcCHHHHHHHHHHHH
Confidence 66666 4666665543
No 221
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=6.4e-21 Score=168.25 Aligned_cols=98 Identities=20% Similarity=0.236 Sum_probs=73.4
Q ss_pred CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhccc--CCCCce-EecCCCHHH-
Q 027060 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQDPKE- 149 (229)
Q Consensus 74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~--~p~~G~-~~~g~~~~~- 149 (229)
+.++|+++||++.|++.. +|+++||+|.+|++++|+|+||||||||+++|+|+++.. .|++|. .++|.++..
T Consensus 42 ~~~~l~i~nl~~~~~~~~----iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~ 117 (305)
T PRK14264 42 GDAKLSVEDLDVYYGDDH----ALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQD 117 (305)
T ss_pred CCceEEEEEEEEEeCCee----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 455799999999998754 899999999999999999999999999999999998510 147897 888865421
Q ss_pred ----HHhhcCCCcccCcch--hhhHHHHHHcc
Q 027060 150 ----AHARRGAPWTFNPLL--LLNCLKNLRNQ 175 (229)
Q Consensus 150 ----~~~~~~~~~~~~~~~--~~tv~e~l~~~ 175 (229)
...+..+.+.+|... ..++.+|+.++
T Consensus 118 ~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~ 149 (305)
T PRK14264 118 GVNLVELRKRVGMVFQSPNPFPKSIRENISYG 149 (305)
T ss_pred cccHHHHhhceEEEccCCccccccHHHHHHhH
Confidence 112233444444432 15888888764
No 222
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.84 E-value=4.8e-21 Score=170.85 Aligned_cols=151 Identities=15% Similarity=0.223 Sum_probs=98.0
Q ss_pred CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCC---Cce-EecCCCHH-
Q 027060 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KAS-SFDSQDPK- 148 (229)
Q Consensus 74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~---~G~-~~~g~~~~- 148 (229)
.+++|+++||++.|+.......+++|+||+|.+||++||+|+||||||||+++|+|+++ |. +|. .++|+++.
T Consensus 9 ~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~---p~~~~sG~I~~~G~~i~~ 85 (330)
T PRK09473 9 ADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLA---ANGRIGGSATFNGREILN 85 (330)
T ss_pred CCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCCCCeEEEECCEECCc
Confidence 45689999999999643223348999999999999999999999999999999999998 85 896 88887642
Q ss_pred ----HHH--hhcCCCcccCcch-----hhhHHHHHHcccccc-------------------------------CCCCCCC
Q 027060 149 ----EAH--ARRGAPWTFNPLL-----LLNCLKNLRNQGSVY-------------------------------APSFDHG 186 (229)
Q Consensus 149 ----~~~--~~~~~~~~~~~~~-----~~tv~e~l~~~~~~~-------------------------------~~~~~~~ 186 (229)
... +...+.+.||.+. .+++.+++......+ ...++.+
T Consensus 86 ~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG 165 (330)
T PRK09473 86 LPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGG 165 (330)
T ss_pred CCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHH
Confidence 111 1234666666642 256666554321110 0012233
Q ss_pred CCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 187 ~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+.+++..+.++..++++||+|+++-.||.-.+.++.++|..
T Consensus 166 ~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~ 206 (330)
T PRK09473 166 MRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNE 206 (330)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 34444444444444555555555555555567777776654
No 223
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.84 E-value=4.3e-21 Score=164.34 Aligned_cols=146 Identities=19% Similarity=0.182 Sum_probs=96.1
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHH--hcccCCCCce-EecCCCHHH--
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKAS-SFDSQDPKE-- 149 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gl--l~~~~p~~G~-~~~g~~~~~-- 149 (229)
.++|++++|++.|++.. +|+++||+|.+||++||+|+||||||||+++|+|+ ++ |++|. .++|.++..
T Consensus 5 ~~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~---~~~G~i~~~g~~~~~~~ 77 (252)
T CHL00131 5 KPILEIKNLHASVNENE----ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYK---ILEGDILFKGESILDLE 77 (252)
T ss_pred CceEEEEeEEEEeCCEE----eeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCc---CCCceEEECCEEcccCC
Confidence 34799999999998654 89999999999999999999999999999999998 57 89997 888865422
Q ss_pred --HHhhcCCCcccCcc---hhhhHHHHHHccccc---------------------------------c--CC-CCCCCCC
Q 027060 150 --AHARRGAPWTFNPL---LLLNCLKNLRNQGSV---------------------------------Y--AP-SFDHGVG 188 (229)
Q Consensus 150 --~~~~~~~~~~~~~~---~~~tv~e~l~~~~~~---------------------------------~--~~-~~~~~~~ 188 (229)
...+.++.+.+|.. ...++.+++.+.... . .. .++.++.
T Consensus 78 ~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~ 157 (252)
T CHL00131 78 PEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEK 157 (252)
T ss_pred hhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHH
Confidence 11222343343332 224555554432100 0 00 1233344
Q ss_pred CchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 189 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 189 ~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+++..+.++..+++++++|+|+..||...++.+.+++.+
T Consensus 158 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 196 (252)
T CHL00131 158 KRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINK 196 (252)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 444444555555666666666666666677888777754
No 224
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=7.2e-21 Score=162.86 Aligned_cols=148 Identities=14% Similarity=0.182 Sum_probs=96.7
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcc--cCCCCce-EecCCCHHH---
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQDPKE--- 149 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~--~~p~~G~-~~~g~~~~~--- 149 (229)
.+|+++||++.|++.. +|+|+||+|.+||+++|+|+||||||||+++|+|++.. ..|++|. .++|.++..
T Consensus 2 ~~l~~~~v~~~~~~~~----~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 77 (250)
T PRK14266 2 YRIEVENLNTYFDDAH----ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77 (250)
T ss_pred cEEEEEeEEEEeCCeE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccc
Confidence 4689999999998654 89999999999999999999999999999999998641 1137897 888876421
Q ss_pred --HHhhcCCCcccCcch--hhhHHHHHHccccccC--------------------------------CCCCCCCCCchhh
Q 027060 150 --AHARRGAPWTFNPLL--LLNCLKNLRNQGSVYA--------------------------------PSFDHGVGDPVED 193 (229)
Q Consensus 150 --~~~~~~~~~~~~~~~--~~tv~e~l~~~~~~~~--------------------------------~~~~~~~~~~~~~ 193 (229)
...+..+.+.+|... ..++.+|+.++..... ..++.++.+++..
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~l 157 (250)
T PRK14266 78 DVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCI 157 (250)
T ss_pred cHHHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHH
Confidence 112233444444322 2588888875421110 0111233334444
Q ss_pred hhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 194 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 194 ~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+.++..+++++++|+++..||...+..+.+++..
T Consensus 158 aral~~~p~llllDEP~~gLD~~~~~~l~~~l~~ 191 (250)
T PRK14266 158 ARTIAVSPEVILMDEPCSALDPISTTKIEDLIHK 191 (250)
T ss_pred HHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 4444555555666666666666567777777654
No 225
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=6.2e-21 Score=165.61 Aligned_cols=149 Identities=17% Similarity=0.188 Sum_probs=96.8
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhccc--CCCCce-EecCCCHHH--
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQDPKE-- 149 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~--~p~~G~-~~~g~~~~~-- 149 (229)
.++|+++|+++.|++.. +|+++||+|.+||+++|+|+||||||||+++|+|+++.. .|++|. .++|.++..
T Consensus 23 ~~~l~~~nl~~~~~~~~----il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~ 98 (272)
T PRK14236 23 QTALEVRNLNLFYGDKQ----ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKK 98 (272)
T ss_pred CcEEEEEEEEEEECCee----EeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccc
Confidence 34799999999998654 899999999999999999999999999999999998600 127897 888876421
Q ss_pred ---HHhhcCCCcccCcchh--hhHHHHHHccccccC--------------------------------CCCCCCCCCchh
Q 027060 150 ---AHARRGAPWTFNPLLL--LNCLKNLRNQGSVYA--------------------------------PSFDHGVGDPVE 192 (229)
Q Consensus 150 ---~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~--------------------------------~~~~~~~~~~~~ 192 (229)
...+..+.+.+|...+ .|+.+|+.+...... ..++.++.+++.
T Consensus 99 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~ 178 (272)
T PRK14236 99 VDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLV 178 (272)
T ss_pred cCHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHH
Confidence 1223344444443221 488888875421110 001122333444
Q ss_pred hhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 193 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 193 ~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
.+.++..+++++++|+|+..||...+..+.+++..
T Consensus 179 laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~ 213 (272)
T PRK14236 179 IARAIAIEPEVLLLDEPTSALDPISTLKIEELITE 213 (272)
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 44444455555666666666665567777776653
No 226
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=5.8e-21 Score=163.61 Aligned_cols=95 Identities=19% Similarity=0.273 Sum_probs=70.6
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC---CCce-EecCCCHHH--
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP---QKAS-SFDSQDPKE-- 149 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p---~~G~-~~~g~~~~~-- 149 (229)
++|+++||++.|++.. +|+++||+|.+||+++|+|+||||||||+++|+|+++. .| ++|. .++|.++..
T Consensus 4 ~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~~~~~~G~i~~~g~~~~~~~ 78 (252)
T PRK14255 4 KIITSSDVHLFYGKFE----ALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDL-IPGVTITGNVSLRGQNIYAPN 78 (252)
T ss_pred ceEEEEeEEEEECCee----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccc-CCCCCcccEEEEcCEEccccc
Confidence 4799999999998644 89999999999999999999999999999999998630 03 4886 888875421
Q ss_pred ---HHhhcCCCcccCcchh--hhHHHHHHcc
Q 027060 150 ---AHARRGAPWTFNPLLL--LNCLKNLRNQ 175 (229)
Q Consensus 150 ---~~~~~~~~~~~~~~~~--~tv~e~l~~~ 175 (229)
...+..+.+.+|.+.+ .++.+|+.+.
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~ 109 (252)
T PRK14255 79 EDVVQLRKQVGMVFQQPNPFPFSIYENVIYG 109 (252)
T ss_pred ccHHHhcCeEEEEECCCccCCCcHHHHHHHH
Confidence 1222344444444321 5888888754
No 227
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.84 E-value=5e-21 Score=181.42 Aligned_cols=88 Identities=15% Similarity=0.042 Sum_probs=68.6
Q ss_pred CCeEEEeeeeEEcC-ccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHh
Q 027060 75 IPVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHA 152 (229)
Q Consensus 75 ~~~i~~~~ls~~y~-~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~ 152 (229)
+++|+++||++.|+ +.. +|+|+||+|.+|++++|+||||||||||+++|+|+++ |++|. .+++. .
T Consensus 4 ~~~l~i~~l~~~y~~~~~----il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~---p~~G~i~~~~~------~ 70 (556)
T PRK11819 4 QYIYTMNRVSKVVPPKKQ----ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK---EFEGEARPAPG------I 70 (556)
T ss_pred cEEEEEeeEEEEeCCCCe----eeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCC------C
Confidence 35899999999998 544 8999999999999999999999999999999999999 99997 55532 1
Q ss_pred hcCC-CcccCcchhhhHHHHHHcc
Q 027060 153 RRGA-PWTFNPLLLLNCLKNLRNQ 175 (229)
Q Consensus 153 ~~~~-~~~~~~~~~~tv~e~l~~~ 175 (229)
.+++ ++.+.....+|+.+|+.++
T Consensus 71 ~i~~v~Q~~~~~~~~tv~e~l~~~ 94 (556)
T PRK11819 71 KVGYLPQEPQLDPEKTVRENVEEG 94 (556)
T ss_pred EEEEEecCCCCCCCCcHHHHHHHh
Confidence 2232 2332223346888887653
No 228
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.84 E-value=1.1e-21 Score=157.26 Aligned_cols=144 Identities=18% Similarity=0.219 Sum_probs=97.7
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA 152 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~ 152 (229)
.++++++.+.-++.. +|+++||.+.+||+++|.||+|||||||+|+++.++. |++|. ++.|+++.. ...
T Consensus 3 lle~kq~~y~a~~a~----il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis---p~~G~l~f~Ge~vs~~~pea~ 75 (223)
T COG4619 3 LLELKQVGYLAGDAK----ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS---PTSGTLLFEGEDVSTLKPEAY 75 (223)
T ss_pred chHHHHHHhhcCCCe----eecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC---CCCceEEEcCccccccChHHH
Confidence 456666655555554 8999999999999999999999999999999999999 99998 899997532 122
Q ss_pred hcCCCcccCcchh--hhHHHHHHccccccCCCCC--------------------------CCCCCchhhhhhccCCccEE
Q 027060 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYAPSFD--------------------------HGVGDPVEDDILVGLQHKVV 204 (229)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~~~~~--------------------------~~~~~~~~~~l~~~~~~rvL 204 (229)
|..+.+.-|.+.+ .||.+|+.|+..++...++ .+..++......+.-.++||
T Consensus 76 Rq~VsY~~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~IL 155 (223)
T COG4619 76 RQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKIL 155 (223)
T ss_pred HHHHHHHHcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceE
Confidence 3333333333333 6899999987665432222 22233333333333345556
Q ss_pred EecCCeeeecccCHHHHHHHHhh
Q 027060 205 IVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 205 i~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
++|+.+.-|||-+.+.+.+++..
T Consensus 156 LLDE~TsALD~~nkr~ie~mi~~ 178 (223)
T COG4619 156 LLDEITSALDESNKRNIEEMIHR 178 (223)
T ss_pred EecCchhhcChhhHHHHHHHHHH
Confidence 66666666666678888777653
No 229
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.84 E-value=8.1e-21 Score=176.34 Aligned_cols=151 Identities=22% Similarity=0.285 Sum_probs=111.4
Q ss_pred CCCeEEEeeeeEEcCcc-------ccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCC
Q 027060 74 EIPVVEARCMDEVYDAL-------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ 145 (229)
Q Consensus 74 ~~~~i~~~~ls~~y~~~-------~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~ 145 (229)
..++++++||++.|... ...+.+++||||+|.+||++||||++|||||||.|+|+|+++ |++|. .++|.
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~---P~~G~i~~~g~ 353 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP---PSSGSIIFDGQ 353 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEEeCc
Confidence 46789999999999842 134678999999999999999999999999999999999999 99997 88887
Q ss_pred CH--H---HHHhhcCCCcccCcch-----hhhHHHHHHcccccc-----------------------------CCCCCCC
Q 027060 146 DP--K---EAHARRGAPWTFNPLL-----LLNCLKNLRNQGSVY-----------------------------APSFDHG 186 (229)
Q Consensus 146 ~~--~---~~~~~~~~~~~~~~~~-----~~tv~e~l~~~~~~~-----------------------------~~~~~~~ 186 (229)
+. . ....+..+.+.||++. .+||.+.+.....++ -..++.+
T Consensus 354 ~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGG 433 (539)
T COG1123 354 DLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGG 433 (539)
T ss_pred ccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcc
Confidence 61 1 1122233444555443 278888777543322 1234566
Q ss_pred CCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 187 ~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+.+|+..+.++..++++|++||++--||...+.++.+++..
T Consensus 434 QrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~ 474 (539)
T COG1123 434 QRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKD 474 (539)
T ss_pred hhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHH
Confidence 67777777777777777777777777777778888887754
No 230
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.84 E-value=1.2e-21 Score=183.48 Aligned_cols=168 Identities=20% Similarity=0.169 Sum_probs=109.0
Q ss_pred hHHHhhcCCCCCcc--ccccccchhhhhHHHH-----------------hhcc--CCCCCeEEEeeeeEEcCcccccccc
Q 027060 38 SFSWIRRNANAQPV--FGKTRSLVQNKTSLKV-----------------LCSQ--RREIPVVEARCMDEVYDALAQRLLP 96 (229)
Q Consensus 38 ~~~~~rr~~~~~~~--~~~~r~~~~~~~~~~~-----------------~~~~--~~~~~~i~~~~ls~~y~~~~~~~~~ 96 (229)
.++|++|+.+.+.+ ++++|... ..+++. +... ..+..+++++|+++.|++.. .+
T Consensus 263 ~~~~i~r~~~~~~~~k~a~sr~k~--l~k~~~~~~~~~~~~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~~---~l 337 (530)
T COG0488 263 EQEWIRRGKAAASKAKKAKSRIKR--LEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGR---LL 337 (530)
T ss_pred HHHHHHHHHhccchHHHHHHHHHH--HHHHHhhhhhcccccccccceeeccCCcccCCCeeEEEeccccccCCCc---ee
Confidence 46999998877666 55555322 222220 0001 12567999999999997641 27
Q ss_pred ccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCceEecCCCHHHHHhhcCCCcccCc-chhhhHHHHHHcc
Q 027060 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWTFNP-LLLLNCLKNLRNQ 175 (229)
Q Consensus 97 l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~g~~~~~~~~~~~~~~~~~~-~~~~tv~e~l~~~ 175 (229)
++++||.|.+|+++||+||||+|||||||+|+|.+. |.+|....|..+...+. .+.... ....++++++...
T Consensus 338 ~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~---~~~G~v~~g~~v~igyf----~Q~~~~l~~~~t~~d~l~~~ 410 (530)
T COG0488 338 LKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG---PLSGTVKVGETVKIGYF----DQHRDELDPDKTVLEELSEG 410 (530)
T ss_pred ecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc---cCCceEEeCCceEEEEE----EehhhhcCccCcHHHHHHhh
Confidence 899999999999999999999999999999999999 99998666654321111 111100 1223666666543
Q ss_pred ccc----------cCCCCCCCCCCchhhhhhccCCccE-----EEecCCeeeecccC
Q 027060 176 GSV----------YAPSFDHGVGDPVEDDILVGLQHKV-----VIVDGNYLFLDGGV 217 (229)
Q Consensus 176 ~~~----------~~~~~~~~~~~~~~~~l~~~~~~rv-----Li~d~~~LlLDEP~ 217 (229)
..- ....|+.....+....++.|++.|+ ++..||+|+||||+
T Consensus 411 ~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPT 467 (530)
T COG0488 411 FPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPT 467 (530)
T ss_pred CccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCC
Confidence 311 0112333333444556677776665 77788999999995
No 231
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=6.6e-21 Score=164.42 Aligned_cols=93 Identities=18% Similarity=0.263 Sum_probs=71.2
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCC-----Cce-EecCCCHHH
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KAS-SFDSQDPKE 149 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~-----~G~-~~~g~~~~~ 149 (229)
++|+++|+++.|++.. +|+|+||+|++|++++|+|+||||||||+++|+|+++ |+ +|. .++|+++..
T Consensus 6 ~~l~~~nl~~~~~~~~----il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---~~g~i~~~G~i~~~g~~i~~ 78 (261)
T PRK14258 6 PAIKVNNLSFYYDTQK----ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE---LESEVRVEGRVEFFNQNIYE 78 (261)
T ss_pred ceEEEeeEEEEeCCee----EeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC---CCCCccccceEEECCEEhhc
Confidence 4799999999998653 7999999999999999999999999999999999998 75 686 788876421
Q ss_pred -----HHhhcCCCcccCcch--hhhHHHHHHcc
Q 027060 150 -----AHARRGAPWTFNPLL--LLNCLKNLRNQ 175 (229)
Q Consensus 150 -----~~~~~~~~~~~~~~~--~~tv~e~l~~~ 175 (229)
...+..+.+.++... ..++.+|+.+.
T Consensus 79 ~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~ 111 (261)
T PRK14258 79 RRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYG 111 (261)
T ss_pred cccchHHhhccEEEEecCCccCcccHHHHHHHH
Confidence 122333444343321 26888888753
No 232
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=6.7e-21 Score=164.56 Aligned_cols=145 Identities=19% Similarity=0.189 Sum_probs=99.7
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC-----CCce-EecCCCHHH
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQDPKE 149 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p-----~~G~-~~~g~~~~~ 149 (229)
+++.++++++.|++.. +|+++||+|++||+++|+|+||||||||+++|+|+++ | ++|. .++|+++..
T Consensus 7 ~~~~~~~~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~~~~~~G~i~~~g~~i~~ 79 (261)
T PRK14263 7 IVMDCKLDKIFYGNFM----AVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMND---LVKGFRFEGHVHFLGQDVYG 79 (261)
T ss_pred ceEEEEeEEEEeCCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccc---cccCCCCceEEEECCEeccc
Confidence 4799999999998754 8999999999999999999999999999999999997 6 6897 888876531
Q ss_pred -----HHhhcCCCcccCcch--hhhHHHHHHccccccC------------------------------CCCCCCCCCchh
Q 027060 150 -----AHARRGAPWTFNPLL--LLNCLKNLRNQGSVYA------------------------------PSFDHGVGDPVE 192 (229)
Q Consensus 150 -----~~~~~~~~~~~~~~~--~~tv~e~l~~~~~~~~------------------------------~~~~~~~~~~~~ 192 (229)
...+..+.+.+|... .+++.+|+.++..... ..++.++.+++.
T Consensus 80 ~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~ 159 (261)
T PRK14263 80 KGVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLC 159 (261)
T ss_pred cccchHhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHH
Confidence 122333444444432 3788899876432110 011223334444
Q ss_pred hhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 193 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 193 ~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
.+.++..+++++++|+|+..||...+.++.+++.+
T Consensus 160 laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~ 194 (261)
T PRK14263 160 IARAIATEPEVLLLDEPCSALDPIATRRVEELMVE 194 (261)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 44444555566666666666666667777777764
No 233
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.84 E-value=1.4e-21 Score=176.13 Aligned_cols=85 Identities=18% Similarity=0.180 Sum_probs=66.8
Q ss_pred EEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----H--HhhcCC
Q 027060 85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-----A--HARRGA 156 (229)
Q Consensus 85 ~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-----~--~~~~~~ 156 (229)
|.|++.. +|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|. .++|.++.. . .++..+
T Consensus 1 ~~~~~~~----~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~---p~~G~I~i~G~~i~~~~~~~~~~~rr~~i 73 (363)
T TIGR01186 1 KKTGGKK----GVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE---PTAGQIFIDGENIMKQSPVELREVRRKKI 73 (363)
T ss_pred CccCCce----eEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCceEEEECCEECCcCCHHHHHHHHhCcE
Confidence 4566654 8999999999999999999999999999999999999 99997 888875421 1 113445
Q ss_pred CcccCcc---hhhhHHHHHHccc
Q 027060 157 PWTFNPL---LLLNCLKNLRNQG 176 (229)
Q Consensus 157 ~~~~~~~---~~~tv~e~l~~~~ 176 (229)
.+.||.+ +.+|+.+|+.++.
T Consensus 74 ~~v~Q~~~l~~~~TV~eNi~~~~ 96 (363)
T TIGR01186 74 GMVFQQFALFPHMTILQNTSLGP 96 (363)
T ss_pred EEEECCCcCCCCCCHHHHHHHHH
Confidence 5555444 3479999998754
No 234
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.83 E-value=6.8e-21 Score=183.07 Aligned_cols=139 Identities=15% Similarity=0.156 Sum_probs=92.2
Q ss_pred CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCceEecCCCHHHHHhh
Q 027060 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHAR 153 (229)
Q Consensus 74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~g~~~~~~~~~ 153 (229)
+..+|+++||++.|++.. +|+++||+|.+|+++||+||||||||||+++|+|+++ |++|....|.++ .
T Consensus 316 ~~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~---p~~G~i~~~~~~-----~ 383 (635)
T PRK11147 316 GKIVFEMENVNYQIDGKQ----LVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ---ADSGRIHCGTKL-----E 383 (635)
T ss_pred CCceEEEeeeEEEECCeE----EEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCCc-----E
Confidence 445899999999998754 8999999999999999999999999999999999999 999973336432 2
Q ss_pred cCCCcccCc----chhhhHHHHHHccccccC-C-------------CCCCCCCCchhhhhhccCCccE-----EEecCCe
Q 027060 154 RGAPWTFNP----LLLLNCLKNLRNQGSVYA-P-------------SFDHGVGDPVEDDILVGLQHKV-----VIVDGNY 210 (229)
Q Consensus 154 ~~~~~~~~~----~~~~tv~e~l~~~~~~~~-~-------------~~~~~~~~~~~~~l~~~~~~rv-----Li~d~~~ 210 (229)
++ +.+|. +..+|+.+|+.+...... . .+.....++....++.|+++|+ ++.+|++
T Consensus 384 i~--y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~l 461 (635)
T PRK11147 384 VA--YFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNL 461 (635)
T ss_pred EE--EEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCE
Confidence 23 22332 223688888876421100 0 0000111233344555555544 5566666
Q ss_pred eeeccc-------CHHHHHHHHh
Q 027060 211 LFLDGG-------VWKDVSSMFD 226 (229)
Q Consensus 211 LlLDEP-------~~~~l~~~l~ 226 (229)
|+|||| ....+.+++.
T Consensus 462 LlLDEPt~~LD~~~~~~l~~~l~ 484 (635)
T PRK11147 462 LILDEPTNDLDVETLELLEELLD 484 (635)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHH
Confidence 666666 4566666554
No 235
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.83 E-value=3.6e-21 Score=173.09 Aligned_cols=137 Identities=13% Similarity=0.155 Sum_probs=93.2
Q ss_pred eeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-------HHhh
Q 027060 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-------AHAR 153 (229)
Q Consensus 82 ~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-------~~~~ 153 (229)
||++.|++.. + ++||+|++||+++|+||||||||||+++|+|+++ |++|. .++|+++.. ...+
T Consensus 4 ~l~~~~~~~~-----~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~---p~~G~I~~~g~~i~~~~~~~~~~~~~ 74 (354)
T TIGR02142 4 RFSKRLGDFS-----L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR---PDEGEIVLNGRTLFDSRKGIFLPPEK 74 (354)
T ss_pred EEEEEECCEE-----E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECccCccccccchhh
Confidence 7999998642 4 8999999999999999999999999999999999 99997 888876421 1123
Q ss_pred cCCCcccCcc---hhhhHHHHHHccccccC-------------------------CCCCCCCCCchhhhhhccCCccEEE
Q 027060 154 RGAPWTFNPL---LLLNCLKNLRNQGSVYA-------------------------PSFDHGVGDPVEDDILVGLQHKVVI 205 (229)
Q Consensus 154 ~~~~~~~~~~---~~~tv~e~l~~~~~~~~-------------------------~~~~~~~~~~~~~~l~~~~~~rvLi 205 (229)
..+.+.+|.+ +.+|+.+|+.++..... ..++.++.+++..+.++..++++|+
T Consensus 75 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lll 154 (354)
T TIGR02142 75 RRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLL 154 (354)
T ss_pred CCeEEEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 3444444443 34799999987532110 0122334444444455555555566
Q ss_pred ecCCeeeecccCHHHHHHHHhh
Q 027060 206 VDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 206 ~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+|+|+..||...+..+.+++..
T Consensus 155 LDEPts~LD~~~~~~l~~~L~~ 176 (354)
T TIGR02142 155 MDEPLAALDDPRKYEILPYLER 176 (354)
T ss_pred EcCCCcCCCHHHHHHHHHHHHH
Confidence 6666666666567777776654
No 236
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.83 E-value=4.2e-21 Score=162.11 Aligned_cols=99 Identities=14% Similarity=0.128 Sum_probs=73.2
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhcC
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARRG 155 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~~ 155 (229)
++.++||++.|++......+|+|+||+|.+||+++|+||||||||||+++|+|+++...|++|. .++|.++.....+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 5789999999965311123899999999999999999999999999999999987511147886 888876543333344
Q ss_pred CCcccCcc---hhhhHHHHHHcc
Q 027060 156 APWTFNPL---LLLNCLKNLRNQ 175 (229)
Q Consensus 156 ~~~~~~~~---~~~tv~e~l~~~ 175 (229)
+.+.+|.. ..+|+.+|+.+.
T Consensus 83 i~~~~q~~~~~~~~tv~enl~~~ 105 (226)
T cd03234 83 VAYVRQDDILLPGLTVRETLTYT 105 (226)
T ss_pred EEEeCCCCccCcCCcHHHHHHHH
Confidence 44445443 236899999864
No 237
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.83 E-value=3.5e-21 Score=158.35 Aligned_cols=129 Identities=17% Similarity=0.174 Sum_probs=83.9
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH-----HHHhhcCCCcccCcc----hh
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK-----EAHARRGAPWTFNPL----LL 165 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~-----~~~~~~~~~~~~~~~----~~ 165 (229)
+|+++||+|.+||+++|+||||||||||+++|+|+++ |++|. .++|.++. ....+..+.+.+|.+ ..
T Consensus 7 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 83 (190)
T TIGR01166 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR---PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA 83 (190)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceeEEECCEEccccccchHHHHhhEEEEecChhhcccc
Confidence 7999999999999999999999999999999999999 99997 88886542 111223344444443 12
Q ss_pred hhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCH
Q 027060 166 LNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVW 218 (229)
Q Consensus 166 ~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~ 218 (229)
.|+.+|+.+...... ..++.++.+++..+.++...++++++|+|+..||...+
T Consensus 84 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 163 (190)
T TIGR01166 84 ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGR 163 (190)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 688999876421110 01112333344444444445555555555555555567
Q ss_pred HHHHHHHhh
Q 027060 219 KDVSSMFDE 227 (229)
Q Consensus 219 ~~l~~~l~~ 227 (229)
+.+.+++..
T Consensus 164 ~~~~~~l~~ 172 (190)
T TIGR01166 164 EQMLAILRR 172 (190)
T ss_pred HHHHHHHHH
Confidence 777777654
No 238
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.83 E-value=7.2e-21 Score=163.50 Aligned_cols=64 Identities=17% Similarity=0.221 Sum_probs=58.0
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC----CCce-EecCCCHH
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP----QKAS-SFDSQDPK 148 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p----~~G~-~~~g~~~~ 148 (229)
+|+++|+++.| +.. +|+++||+|.+||+++|+|+||||||||+++|+|+++ | ++|. .++|.++.
T Consensus 4 ~l~~~~l~~~~-~~~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~~~~~G~i~~~g~~i~ 72 (254)
T PRK10418 4 QIELRNIALQA-AQP----LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILP---AGVRQTAGRVLLDGKPVA 72 (254)
T ss_pred EEEEeCeEEEe-ccc----eecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCCcCCEEEECCeecc
Confidence 69999999999 433 7999999999999999999999999999999999998 8 8997 88887653
No 239
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.83 E-value=4.4e-21 Score=173.85 Aligned_cols=139 Identities=14% Similarity=0.131 Sum_probs=92.2
Q ss_pred eeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCC----CHH-----HH-
Q 027060 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ----DPK-----EA- 150 (229)
Q Consensus 82 ~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~----~~~-----~~- 150 (229)
++.+.|+... +|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|. +++|+ ++. ..
T Consensus 29 ~~~~~~g~~~----~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~---p~~G~I~idG~~~~~~i~~~~~~~l~ 101 (382)
T TIGR03415 29 EILDETGLVV----GVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP---VSRGSVLVKDGDGSIDVANCDAATLR 101 (382)
T ss_pred HHHHhhCCEE----EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCEecccccccCCHHHHH
Confidence 3455555543 8999999999999999999999999999999999999 99997 88884 221 11
Q ss_pred -HhhcCCCcccCcc---hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccC
Q 027060 151 -HARRGAPWTFNPL---LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGL 199 (229)
Q Consensus 151 -~~~~~~~~~~~~~---~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~ 199 (229)
.++..+.+.||.+ +.+|+.+|+.++..... ..++.++.+++..+.++..
T Consensus 102 ~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~ 181 (382)
T TIGR03415 102 RLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAM 181 (382)
T ss_pred HHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 1223455555554 34799999987642211 0122334444444444555
Q ss_pred CccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 200 ~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
++++|++|+++..||...++++.+++..
T Consensus 182 ~P~ILLlDEPts~LD~~~r~~l~~~L~~ 209 (382)
T TIGR03415 182 DADILLMDEPFSALDPLIRTQLQDELLE 209 (382)
T ss_pred CCCEEEEECCCccCCHHHHHHHHHHHHH
Confidence 5555555555555555567777776643
No 240
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=8.8e-21 Score=163.49 Aligned_cols=94 Identities=21% Similarity=0.239 Sum_probs=71.6
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-Eec------CCCH
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFD------SQDP 147 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~------g~~~ 147 (229)
.++|+++++++.|++.. +|+|+||+|.+||+++|+|+||||||||+++|+|++. |++|. .++ |.++
T Consensus 8 ~~~i~~~~~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~---~~~G~v~~~G~~~~~g~~~ 80 (257)
T PRK14246 8 EDVFNISRLYLYINDKA----ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE---IYDSKIKVDGKVLYFGKDI 80 (257)
T ss_pred hhheeeeeEEEecCCce----eEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCcCceeEcCEEEECCccc
Confidence 35799999999998765 8999999999999999999999999999999999999 98864 444 4443
Q ss_pred H---HHHhhcCCCcccCcc---hhhhHHHHHHcc
Q 027060 148 K---EAHARRGAPWTFNPL---LLLNCLKNLRNQ 175 (229)
Q Consensus 148 ~---~~~~~~~~~~~~~~~---~~~tv~e~l~~~ 175 (229)
. ....+..+.+.++.+ ..+|+.+|+.++
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~ 114 (257)
T PRK14246 81 FQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYP 114 (257)
T ss_pred ccCCHHHHhcceEEEccCCccCCCCcHHHHHHHH
Confidence 2 112233444444443 236899998864
No 241
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=4.8e-21 Score=162.83 Aligned_cols=142 Identities=14% Similarity=0.223 Sum_probs=98.9
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH-HhhcC
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA-HARRG 155 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~-~~~~~ 155 (229)
|+++|+++.|++. +|+++||+|.+||+++|+|+||||||||+++|+|+++ |++|. .++|.++... ..+..
T Consensus 1 l~~~~l~~~~~~~-----~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~---p~~G~v~i~g~~~~~~~~~~~~ 72 (235)
T cd03299 1 LKVENLSKDWKEF-----KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK---PDSGKILLNGKDITNLPPEKRD 72 (235)
T ss_pred CeeEeEEEEeCCc-----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEcCcCChhHcC
Confidence 4689999999752 6999999999999999999999999999999999999 99997 8888764321 11233
Q ss_pred CCcccCc---chhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCCccEEE
Q 027060 156 APWTFNP---LLLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQHKVVI 205 (229)
Q Consensus 156 ~~~~~~~---~~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~~rvLi 205 (229)
+.+.++. +..+++.+|+.+...... ..++.++.+++..+.++..++++++
T Consensus 73 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll 152 (235)
T cd03299 73 ISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILL 152 (235)
T ss_pred EEEEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 3333333 223688888875421110 0123344555555555666666677
Q ss_pred ecCCeeeecccCHHHHHHHHhh
Q 027060 206 VDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 206 ~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+|+|+..||...+..+.+++..
T Consensus 153 lDEPt~gLD~~~~~~l~~~l~~ 174 (235)
T cd03299 153 LDEPFSALDVRTKEKLREELKK 174 (235)
T ss_pred ECCCcccCCHHHHHHHHHHHHH
Confidence 7777777777677777776643
No 242
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.83 E-value=1.2e-20 Score=158.45 Aligned_cols=91 Identities=11% Similarity=0.153 Sum_probs=69.9
Q ss_pred EEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-------H
Q 027060 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-------A 150 (229)
Q Consensus 79 ~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-------~ 150 (229)
.+.++.+.|++.. .+|+++||+|.+|++++|+|+||||||||+++|+|+++ |++|. .++|.++.. .
T Consensus 2 ~~~~~~~~~~~~~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~~ 75 (218)
T cd03290 2 QVTNGYFSWGSGL---ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ---TLEGKVHWSNKNESEPSFEATRS 75 (218)
T ss_pred eeeeeEEecCCCC---cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCeEEECCcccccccccccch
Confidence 5789999997532 27999999999999999999999999999999999999 99997 888875421 1
Q ss_pred HhhcCCCcccCcch--hhhHHHHHHcc
Q 027060 151 HARRGAPWTFNPLL--LLNCLKNLRNQ 175 (229)
Q Consensus 151 ~~~~~~~~~~~~~~--~~tv~e~l~~~ 175 (229)
..+.++.+.+|.+. ..++.+|+.+.
T Consensus 76 ~~~~~i~~~~q~~~~~~~t~~~nl~~~ 102 (218)
T cd03290 76 RNRYSVAYAAQKPWLLNATVEENITFG 102 (218)
T ss_pred hhcceEEEEcCCCccccccHHHHHhhc
Confidence 12233444444432 36888988764
No 243
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.83 E-value=1.7e-20 Score=160.64 Aligned_cols=144 Identities=17% Similarity=0.256 Sum_probs=110.1
Q ss_pred CCeEEEeeeeEEcCccc----c-ccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH
Q 027060 75 IPVVEARCMDEVYDALA----Q-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK 148 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~----~-~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~ 148 (229)
+++++++|+++.|.-.. . .+.+++||||+|++||++||||+||||||||-|+|+|+++ |++|. +++|+++.
T Consensus 2 ~~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~---pt~G~i~f~g~~i~ 78 (268)
T COG4608 2 EPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE---PTSGEILFEGKDIT 78 (268)
T ss_pred CceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC---CCCceEEEcCcchh
Confidence 46899999999996432 1 2568999999999999999999999999999999999999 99997 88998753
Q ss_pred HHHhhcCCCcccCcchhhhHHHHHHccc---cccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHH
Q 027060 149 EAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 225 (229)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~tv~e~l~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l 225 (229)
... ..-........++.+.... .-+-..++.++.||+..+.++..++++++.|+++-.||-..+.++.+++
T Consensus 79 ~~~------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL 152 (268)
T COG4608 79 KLS------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLL 152 (268)
T ss_pred hcc------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHH
Confidence 321 0000001123333333221 1233467788999999999999999999999999999999999998887
Q ss_pred hh
Q 027060 226 DE 227 (229)
Q Consensus 226 ~~ 227 (229)
..
T Consensus 153 ~d 154 (268)
T COG4608 153 KD 154 (268)
T ss_pred HH
Confidence 54
No 244
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.83 E-value=7.4e-21 Score=177.94 Aligned_cols=93 Identities=20% Similarity=0.236 Sum_probs=73.1
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC--CCce-EecCCCHHH----
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKAS-SFDSQDPKE---- 149 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p--~~G~-~~~g~~~~~---- 149 (229)
+|+++|+++.|++.. +|+++||+|.+|++++|+||||||||||+++|+|+++ | ++|. .++|+++..
T Consensus 1 ~l~i~~l~~~~~~~~----il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~---~~~~~G~i~~~g~~~~~~~~~ 73 (500)
T TIGR02633 1 LLEMKGIVKTFGGVK----ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYP---HGTWDGEIYWSGSPLKASNIR 73 (500)
T ss_pred CEEEEeEEEEeCCeE----eecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCCeEEEECCEECCCCCHH
Confidence 489999999998654 8999999999999999999999999999999999988 7 6897 888875421
Q ss_pred HHhhcCCCcccCcc---hhhhHHHHHHccc
Q 027060 150 AHARRGAPWTFNPL---LLLNCLKNLRNQG 176 (229)
Q Consensus 150 ~~~~~~~~~~~~~~---~~~tv~e~l~~~~ 176 (229)
...+..+.+.+|.+ ..+++.+|+.++.
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~ 103 (500)
T TIGR02633 74 DTERAGIVIIHQELTLVPELSVAENIFLGN 103 (500)
T ss_pred HHHhCCEEEEeeccccCCCCcHHHHHHhhc
Confidence 11233455555543 3378999987653
No 245
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.83 E-value=1.4e-20 Score=162.13 Aligned_cols=147 Identities=14% Similarity=0.094 Sum_probs=94.8
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HH
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AH 151 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~ 151 (229)
..|+++|+++.|++.. ..+|+++||+|.+||+++|+|+||||||||+++|+|+++ |++|. .++|.++.. ..
T Consensus 18 ~~i~~~~l~~~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~i~g~~i~~~~~~~ 92 (257)
T cd03288 18 GEIKIHDLCVRYENNL--KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD---IFDGKIVIDGIDISKLPLHT 92 (257)
T ss_pred ceEEEEEEEEEeCCCC--CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC---CCCCeEEECCEEhhhCCHHH
Confidence 4699999999997621 127999999999999999999999999999999999999 99997 888876532 11
Q ss_pred hhcCCCcccCcch--hhhHHHHHHcccccc-------------------------------CCCCCCCCCCchhhhhhcc
Q 027060 152 ARRGAPWTFNPLL--LLNCLKNLRNQGSVY-------------------------------APSFDHGVGDPVEDDILVG 198 (229)
Q Consensus 152 ~~~~~~~~~~~~~--~~tv~e~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~l~~~ 198 (229)
.+..+.+.+|.+. ..++.+|+....... ...++.++.+++..+.++.
T Consensus 93 ~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 172 (257)
T cd03288 93 LRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFV 172 (257)
T ss_pred HhhhEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHh
Confidence 1222333333322 146666664321100 0012223344444444445
Q ss_pred CCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 199 ~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
.+++++++|+|+..||......+.+++..
T Consensus 173 ~~p~llllDEPt~gLD~~~~~~l~~~l~~ 201 (257)
T cd03288 173 RKSSILIMDEATASIDMATENILQKVVMT 201 (257)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 55555555555555555566777776653
No 246
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.4e-20 Score=162.61 Aligned_cols=93 Identities=17% Similarity=0.203 Sum_probs=70.3
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC-----CCce-EecCCCHH-
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQDPK- 148 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p-----~~G~-~~~g~~~~- 148 (229)
.+|+++|+++.|++.. +|+++||+|.+||+++|+|+||||||||+++|+|++. | ++|. .++|.++.
T Consensus 15 ~~l~~~~l~~~~~~~~----vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~sG~i~~~g~~~~~ 87 (265)
T PRK14252 15 QKSEVNKLNFYYGGYQ----ALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHD---LYPGNHYEGEIILHPDNVNI 87 (265)
T ss_pred ceEEEEEEEEEECCee----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC---CCCCCCcccEEEEcCccccc
Confidence 4699999999998654 8999999999999999999999999999999999987 5 6886 78776432
Q ss_pred ------HHHhhcCCCcccCcch--hhhHHHHHHcc
Q 027060 149 ------EAHARRGAPWTFNPLL--LLNCLKNLRNQ 175 (229)
Q Consensus 149 ------~~~~~~~~~~~~~~~~--~~tv~e~l~~~ 175 (229)
....+.++.+.++... ..++.+|+.++
T Consensus 88 ~~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~ 122 (265)
T PRK14252 88 LSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYG 122 (265)
T ss_pred cccccCHHHHhccEEEEccCCcCCcchHHHHHHhH
Confidence 1122333434443321 14888888754
No 247
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=8e-21 Score=159.01 Aligned_cols=136 Identities=17% Similarity=0.205 Sum_probs=90.7
Q ss_pred eeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-------HHhh
Q 027060 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-------AHAR 153 (229)
Q Consensus 82 ~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-------~~~~ 153 (229)
+|+|+|++.. + |+||+|.+ |+++|+|+||||||||+++|+|+++ |++|. .++|.++.. ...+
T Consensus 5 ~l~~~~~~~~----~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~~~ 74 (214)
T cd03297 5 DIEKRLPDFT----L--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK---PDGGTIVLNGTVLFDSRKKINLPPQQ 74 (214)
T ss_pred eeeEecCCee----e--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEecccccchhhhhhHh
Confidence 8999999853 4 99999999 9999999999999999999999999 99997 888865421 1112
Q ss_pred cCCCcccCcc---hhhhHHHHHHccccccC-------------------------CCCCCCCCCchhhhhhccCCccEEE
Q 027060 154 RGAPWTFNPL---LLLNCLKNLRNQGSVYA-------------------------PSFDHGVGDPVEDDILVGLQHKVVI 205 (229)
Q Consensus 154 ~~~~~~~~~~---~~~tv~e~l~~~~~~~~-------------------------~~~~~~~~~~~~~~l~~~~~~rvLi 205 (229)
..+.+.+|.. ..+|+.+|+.+...... ..++.++.+++..+.++...+++++
T Consensus 75 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 154 (214)
T cd03297 75 RKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLL 154 (214)
T ss_pred hcEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 3344444443 23688888875422100 0122233444444445555555666
Q ss_pred ecCCeeeecccCHHHHHHHHhh
Q 027060 206 VDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 206 ~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+|+|+..||...++.+.+++..
T Consensus 155 lDEPt~~LD~~~~~~l~~~l~~ 176 (214)
T cd03297 155 LDEPFSALDRALRLQLLPELKQ 176 (214)
T ss_pred EcCCcccCCHHHHHHHHHHHHH
Confidence 6666666666567777776653
No 248
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.83 E-value=1.2e-20 Score=161.21 Aligned_cols=64 Identities=23% Similarity=0.344 Sum_probs=57.9
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHh--cccCCCCce-EecCCCH
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKAS-SFDSQDP 147 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll--~~~~p~~G~-~~~g~~~ 147 (229)
+|+++|+++.|++.. +|+++||+|.+|++++|+|+||||||||+++|+|++ + |++|. .++|.++
T Consensus 1 ~i~~~nl~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~~~G~i~~~g~~~ 67 (248)
T PRK09580 1 MLSIKDLHVSVEDKA----ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYE---VTGGTVEFKGKDL 67 (248)
T ss_pred CeEEEEEEEEeCCee----eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCC---CCceEEEECCCcc
Confidence 488999999998654 899999999999999999999999999999999994 7 89997 8888764
No 249
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.83 E-value=3.1e-20 Score=184.06 Aligned_cols=145 Identities=19% Similarity=0.218 Sum_probs=116.2
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----H
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-----A 150 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-----~ 150 (229)
.|+++||+++|+.++ .+.+|+++||.|++|+.++|||+|||||||++++|.+++. |++|. .++|.++.. .
T Consensus 350 ~ief~nV~FsYPsRp-dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd---P~~G~V~idG~di~~~~~~~l 425 (1228)
T KOG0055|consen 350 EIEFRNVCFSYPSRP-DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD---PTSGEVLIDGEDIRNLNLKWL 425 (1228)
T ss_pred ceEEEEEEecCCCCC-cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCceEEEcCccchhcchHHH
Confidence 599999999999874 5668999999999999999999999999999999999999 99997 999997543 3
Q ss_pred HhhcCCCcccCcc--hhhhHHHHHHccccc--------------------------------cCCCCCCCCCCchhhhhh
Q 027060 151 HARRGAPWTFNPL--LLLNCLKNLRNQGSV--------------------------------YAPSFDHGVGDPVEDDIL 196 (229)
Q Consensus 151 ~~~~~~~~~~~~~--~~~tv~e~l~~~~~~--------------------------------~~~~~~~~~~~~~~~~l~ 196 (229)
+..+|+ ++|.+ ...|+.||+.++..- .....+.++++|++.+++
T Consensus 426 r~~igl--V~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARa 503 (1228)
T KOG0055|consen 426 RSQIGL--VSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARA 503 (1228)
T ss_pred HhhcCe--eeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHH
Confidence 444444 44444 348999999998521 012244567778888888
Q ss_pred ccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 197 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 197 ~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+..+++||++||.+-.||....+.+.+.+|.
T Consensus 504 lv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~ 534 (1228)
T KOG0055|consen 504 LVRNPKILLLDEATSALDAESERVVQEALDK 534 (1228)
T ss_pred HHhCCCEEEecCcccccCHHHHHHHHHHHHH
Confidence 8788888888888888888888888888774
No 250
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.82 E-value=6.7e-21 Score=162.11 Aligned_cols=77 Identities=19% Similarity=0.245 Sum_probs=57.6
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH--HHhhcCCCccc----CcchhhhH
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE--AHARRGAPWTF----NPLLLLNC 168 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~--~~~~~~~~~~~----~~~~~~tv 168 (229)
+|+++||+|++|++++|+|+||||||||+++|+|+++ |++|. .++|.+... ...+..+.+.+ ..+..+++
T Consensus 36 il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ---PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcH
Confidence 8999999999999999999999999999999999999 99997 788765321 11122233322 22233688
Q ss_pred HHHHHcc
Q 027060 169 LKNLRNQ 175 (229)
Q Consensus 169 ~e~l~~~ 175 (229)
.+|+.+.
T Consensus 113 ~e~l~~~ 119 (236)
T cd03267 113 IDSFYLL 119 (236)
T ss_pred HHHHHHH
Confidence 8887653
No 251
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.2e-20 Score=180.98 Aligned_cols=98 Identities=13% Similarity=0.193 Sum_probs=73.7
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCH------
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDP------ 147 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~------ 147 (229)
+++|+++|+++.|+.......+|+||||+|.+||++||+|+||||||||+|+|+|+++ |++|. .++|.++
T Consensus 10 ~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~---p~~G~i~~~g~~~~~~~~~ 86 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE---QAGGLVQCDKMLLRRRSRQ 86 (623)
T ss_pred CceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCCeEEEECCEEecccccc
Confidence 4589999999999742112348999999999999999999999999999999999999 99997 6666311
Q ss_pred ---------HHH-H-hhcCCCcccCcc-----hhhhHHHHHHcc
Q 027060 148 ---------KEA-H-ARRGAPWTFNPL-----LLLNCLKNLRNQ 175 (229)
Q Consensus 148 ---------~~~-~-~~~~~~~~~~~~-----~~~tv~e~l~~~ 175 (229)
... . +...+++.+|.+ +.+|+.+|+.++
T Consensus 87 ~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~ 130 (623)
T PRK10261 87 VIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAES 130 (623)
T ss_pred ccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHH
Confidence 111 1 122456666653 237999998764
No 252
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.4e-20 Score=177.28 Aligned_cols=61 Identities=20% Similarity=0.297 Sum_probs=56.3
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecC
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS 144 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g 144 (229)
+|+++|+++.|++.. +|+++||+|.+||+++|+||||||||||+|+|+|+++ |++|. .++|
T Consensus 1 ml~i~~ls~~~~~~~----il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~---p~~G~i~~~~ 62 (530)
T PRK15064 1 MLSTANITMQFGAKP----LFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE---PSAGNVSLDP 62 (530)
T ss_pred CEEEEEEEEEeCCcE----eEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecC
Confidence 489999999998754 8999999999999999999999999999999999999 99997 6665
No 253
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.82 E-value=7.8e-21 Score=177.47 Aligned_cols=89 Identities=19% Similarity=0.233 Sum_probs=70.1
Q ss_pred EeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----HHhhc
Q 027060 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----AHARR 154 (229)
Q Consensus 80 ~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----~~~~~ 154 (229)
++|+++.|++.. +|+|+||+|.+||+++|+|+||||||||+++|+|+++ |++|. .++|+++.. ...+.
T Consensus 1 ~~nl~~~~~~~~----il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~~ 73 (491)
T PRK10982 1 MSNISKSFPGVK----ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ---KDSGSILFQGKEIDFKSSKEALEN 73 (491)
T ss_pred CCceEEEeCCEE----eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCEECCCCCHHHHHhC
Confidence 468999998654 8999999999999999999999999999999999999 99997 888875421 11233
Q ss_pred CCCcccCcc---hhhhHHHHHHcc
Q 027060 155 GAPWTFNPL---LLLNCLKNLRNQ 175 (229)
Q Consensus 155 ~~~~~~~~~---~~~tv~e~l~~~ 175 (229)
.+.+.+|.. ..+|+.+|+.++
T Consensus 74 ~i~~v~q~~~~~~~~tv~~~l~~~ 97 (491)
T PRK10982 74 GISMVHQELNLVLQRSVMDNMWLG 97 (491)
T ss_pred CEEEEecccccccCCCHHHHhhcc
Confidence 444444443 337999999864
No 254
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.82 E-value=2.4e-20 Score=181.19 Aligned_cols=145 Identities=20% Similarity=0.175 Sum_probs=101.5
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA 152 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~ 152 (229)
.|+++||+++|++... .+|+|+||+|++||.++|+|+||||||||+++|+|+++ |++|. .++|.++.. ...
T Consensus 477 ~I~~~~vsf~y~~~~~--~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~l 551 (710)
T TIGR03796 477 YVELRNITFGYSPLEP--PLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ---PWSGEILFDGIPREEIPREVL 551 (710)
T ss_pred eEEEEEEEEecCCCCC--CcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEeHHHCCHHHH
Confidence 5999999999985321 27999999999999999999999999999999999999 99997 999987643 122
Q ss_pred hcCCCcccCcchh--hhHHHHHHcccccc--------------------------------CCCCCCCCCCchhhhhhcc
Q 027060 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVY--------------------------------APSFDHGVGDPVEDDILVG 198 (229)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~--------------------------------~~~~~~~~~~~~~~~l~~~ 198 (229)
+..+.+.+|.+.+ .|++||+.++..-. ....+.|+.|++..++++.
T Consensus 552 r~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall 631 (710)
T TIGR03796 552 ANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALV 631 (710)
T ss_pred HhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHh
Confidence 3445555555543 78999998753210 0012233444444445555
Q ss_pred CCccEEEecCCeeeecccCHHHHHHHHh
Q 027060 199 LQHKVVIVDGNYLFLDGGVWKDVSSMFD 226 (229)
Q Consensus 199 ~~~rvLi~d~~~LlLDEP~~~~l~~~l~ 226 (229)
.+++++++||++--||..+.+++.+.+.
T Consensus 632 ~~p~iliLDEptS~LD~~te~~i~~~l~ 659 (710)
T TIGR03796 632 RNPSILILDEATSALDPETEKIIDDNLR 659 (710)
T ss_pred hCCCEEEEECccccCCHHHHHHHHHHHH
Confidence 5555555555555555556777776654
No 255
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.82 E-value=5.4e-21 Score=161.53 Aligned_cols=63 Identities=19% Similarity=0.190 Sum_probs=57.9
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCH
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDP 147 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~ 147 (229)
+.++++++.|++.. +|+++||+|.+|++++|+|+||||||||+++|+|+++ |++|. .++|++.
T Consensus 23 l~~~~~~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~ 86 (224)
T cd03220 23 LGILGRKGEVGEFW----ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP---PDSGTVTVRGRVS 86 (224)
T ss_pred hhhhhhhhhcCCeE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEc
Confidence 77889999998865 8999999999999999999999999999999999999 99997 8888654
No 256
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.82 E-value=2.2e-20 Score=176.83 Aligned_cols=85 Identities=13% Similarity=0.026 Sum_probs=67.3
Q ss_pred CeEEEeeeeEEcC-ccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhh
Q 027060 76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHAR 153 (229)
Q Consensus 76 ~~i~~~~ls~~y~-~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~ 153 (229)
.+|+++||++.|+ +.. +|+|+||+|.+|++++|+|+|||||||||++|+|+++ |++|. .+++.
T Consensus 3 ~~i~~~nls~~~~~~~~----il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~---p~~G~i~~~~~-------- 67 (552)
T TIGR03719 3 YIYTMNRVSKVVPPKKE----ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK---EFNGEARPAPG-------- 67 (552)
T ss_pred EEEEEeeEEEecCCCCe----eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCC--------
Confidence 3799999999997 443 8999999999999999999999999999999999999 99997 55432
Q ss_pred cCCCcccCcc---hhhhHHHHHHcc
Q 027060 154 RGAPWTFNPL---LLLNCLKNLRNQ 175 (229)
Q Consensus 154 ~~~~~~~~~~---~~~tv~e~l~~~ 175 (229)
..+++.+|.+ ..+|+.+|+.++
T Consensus 68 ~~i~~v~Q~~~~~~~~tv~e~i~~~ 92 (552)
T TIGR03719 68 IKVGYLPQEPQLDPTKTVRENVEEG 92 (552)
T ss_pred CEEEEEeccCCCCCCCcHHHHHHHh
Confidence 1233333332 336888887653
No 257
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=2.6e-20 Score=159.61 Aligned_cols=94 Identities=16% Similarity=0.155 Sum_probs=69.4
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcc-c-CCCCce-EecCCCHHHH----
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK-I-WPQKAS-SFDSQDPKEA---- 150 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~-~-~p~~G~-~~~g~~~~~~---- 150 (229)
-+++||++.|++.. +|+++||+|.+||+++|+|+||||||||+++|+|++.. . .|++|. .++|.++...
T Consensus 6 ~~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 81 (251)
T PRK14244 6 ASVKNLNLWYGSKQ----ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNV 81 (251)
T ss_pred EEeeeEEEEECCee----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccch
Confidence 46899999998654 89999999999999999999999999999999999741 0 136897 8888765321
Q ss_pred -HhhcCCCcccCcchh--hhHHHHHHcc
Q 027060 151 -HARRGAPWTFNPLLL--LNCLKNLRNQ 175 (229)
Q Consensus 151 -~~~~~~~~~~~~~~~--~tv~e~l~~~ 175 (229)
..+..+.+.+|...+ .++.+|+.+.
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~~ni~~~ 109 (251)
T PRK14244 82 VLLRAKVGMVFQKPNPFPKSIYDNVAYG 109 (251)
T ss_pred HHHhhhEEEEecCcccccCCHHHHHHHH
Confidence 123334444444321 4888888754
No 258
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.82 E-value=3.7e-20 Score=174.19 Aligned_cols=146 Identities=18% Similarity=0.193 Sum_probs=100.6
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA 152 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~ 152 (229)
.|+++||+++|++... .+|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|. .++|.++.. ...
T Consensus 320 ~i~~~~v~f~y~~~~~--~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~I~~~g~~i~~~~~~~l 394 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRA--PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD---PTEGSIAVNGVPLADADADSW 394 (529)
T ss_pred eEEEEEEEEECCCCCc--ccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEehhhCCHHHH
Confidence 5999999999976321 27999999999999999999999999999999999999 99997 889986532 222
Q ss_pred hcCCCcccCcchh--hhHHHHHHccccccC--------------------------------CCCCCCCCCchhhhhhcc
Q 027060 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA--------------------------------PSFDHGVGDPVEDDILVG 198 (229)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~--------------------------------~~~~~~~~~~~~~~l~~~ 198 (229)
+..+.+.+|.+.+ .|+.||+.++..... ...+.++.+|...++++.
T Consensus 395 r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~ 474 (529)
T TIGR02857 395 RDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFL 474 (529)
T ss_pred HhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHh
Confidence 3334444554433 799999987532110 011223344444444444
Q ss_pred CCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 199 ~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
.+++++++||++-.||..+.+++.+.+..
T Consensus 475 ~~~~ililDE~ts~lD~~~~~~i~~~l~~ 503 (529)
T TIGR02857 475 RDAPLLLLDEPTAHLDAETEALVTEALRA 503 (529)
T ss_pred cCCCEEEEeCcccccCHHHHHHHHHHHHH
Confidence 55555555555555555567777776654
No 259
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.82 E-value=3.4e-20 Score=180.11 Aligned_cols=144 Identities=17% Similarity=0.109 Sum_probs=99.4
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA 152 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~ 152 (229)
.|+++||+++|++.. .+|+|+||+|++|+.++|+|+||||||||+++|+|++. |++|. .++|.++.. ...
T Consensus 473 ~I~~~~vsf~y~~~~---~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~l 546 (708)
T TIGR01193 473 DIVINDVSYSYGYGS---NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ---ARSGEILLNGFSLKDIDRHTL 546 (708)
T ss_pred cEEEEEEEEEcCCCC---cceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC---CCCcEEEECCEEHHHcCHHHH
Confidence 499999999997421 27999999999999999999999999999999999999 99997 999987543 122
Q ss_pred hcCCCcccCcchh--hhHHHHHHccccccC---------------------------------CCCCCCCCCchhhhhhc
Q 027060 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA---------------------------------PSFDHGVGDPVEDDILV 197 (229)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~---------------------------------~~~~~~~~~~~~~~l~~ 197 (229)
+..+.+.+|.+.+ .|++||+.++..... ...+.++.+++..++++
T Consensus 547 r~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARal 626 (708)
T TIGR01193 547 RQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARAL 626 (708)
T ss_pred HHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHH
Confidence 3344455555433 799999998621100 01122334444444444
Q ss_pred cCCccEEEecCCeeeecccCHHHHHHHHh
Q 027060 198 GLQHKVVIVDGNYLFLDGGVWKDVSSMFD 226 (229)
Q Consensus 198 ~~~~rvLi~d~~~LlLDEP~~~~l~~~l~ 226 (229)
..++++|++||++--||..+.+.+.+.+.
T Consensus 627 l~~p~iliLDE~Ts~LD~~te~~i~~~L~ 655 (708)
T TIGR01193 627 LTDSKVLILDESTSNLDTITEKKIVNNLL 655 (708)
T ss_pred hhCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence 45555555555555555556677766554
No 260
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.82 E-value=2.8e-20 Score=180.13 Aligned_cols=95 Identities=22% Similarity=0.275 Sum_probs=76.5
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA 152 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~ 152 (229)
.|+++||+++|++... .+|+|+||+|++||+++|+|+||||||||+|+|+|++. |++|. .++|.++.. ...
T Consensus 451 ~I~~~nvsf~Y~~~~~--~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~l 525 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGP--LILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET---PESGSVFYDGQDLAGLDVQAV 525 (686)
T ss_pred eEEEEEEEEEcCCCCc--cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEEcCcCCHHHH
Confidence 5999999999964321 27999999999999999999999999999999999999 99997 899986432 223
Q ss_pred hcCCCcccCcchh--hhHHHHHHccc
Q 027060 153 RRGAPWTFNPLLL--LNCLKNLRNQG 176 (229)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~ 176 (229)
+..+.+.+|.+.+ -|++||+.++.
T Consensus 526 r~~i~~v~Q~~~lf~gTI~eNi~~~~ 551 (686)
T TIGR03797 526 RRQLGVVLQNGRLMSGSIFENIAGGA 551 (686)
T ss_pred HhccEEEccCCccCcccHHHHHhcCC
Confidence 4445555555543 68999998864
No 261
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.82 E-value=2.7e-20 Score=150.80 Aligned_cols=145 Identities=17% Similarity=0.258 Sum_probs=111.1
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCC-------
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQD------- 146 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~------- 146 (229)
++.|+++|+.|+||... +|++||++-++|+++.|||-+|||||||||||+-+.+ |..|. .++|+.
T Consensus 4 ~~~l~v~dlHK~~G~~e----VLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~---P~~G~I~v~geei~~k~~~ 76 (256)
T COG4598 4 ENALEVEDLHKRYGEHE----VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK---PSAGSIRVNGEEIRLKRDK 76 (256)
T ss_pred ccceehhHHHhhcccch----hhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC---CCCceEEECCeEEEeeeCC
Confidence 35699999999999876 8999999999999999999999999999999999999 99996 777762
Q ss_pred --------HHH-HHhhcCCCcccCcchh---hhHHHHHHcccc----------------------------ccCCCCCCC
Q 027060 147 --------PKE-AHARRGAPWTFNPLLL---LNCLKNLRNQGS----------------------------VYAPSFDHG 186 (229)
Q Consensus 147 --------~~~-~~~~~~~~~~~~~~~~---~tv~e~l~~~~~----------------------------~~~~~~~~~ 186 (229)
... .+.|....++||.+++ +|++||+..... .|-...+.+
T Consensus 77 ~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGG 156 (256)
T COG4598 77 DGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGG 156 (256)
T ss_pred CCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCch
Confidence 111 2233445666666654 899999985311 011123467
Q ss_pred CCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHh
Q 027060 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 226 (229)
Q Consensus 187 ~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~ 226 (229)
+.++...+.++...++++++|+|+..||+.-.-++.+.++
T Consensus 157 QQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~ 196 (256)
T COG4598 157 QQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQ 196 (256)
T ss_pred HHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHH
Confidence 7788888888888888888888888888875555555443
No 262
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.82 E-value=2.8e-20 Score=174.92 Aligned_cols=59 Identities=19% Similarity=0.366 Sum_probs=53.5
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHh--cccCCCCce-Eec
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKAS-SFD 143 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll--~~~~p~~G~-~~~ 143 (229)
|+++|+++.|+++. +|+++||+|.+|++++|+||||||||||+|+|+|++ + |++|. .++
T Consensus 1 l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~---p~~G~i~~~ 62 (520)
T TIGR03269 1 IEVKNLTKKFDGKE----VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYE---PTSGRIIYH 62 (520)
T ss_pred CEEEEEEEEECCeE----eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCC---CCceEEEEe
Confidence 57899999998654 899999999999999999999999999999999996 7 89997 664
No 263
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.81 E-value=3e-20 Score=178.30 Aligned_cols=98 Identities=16% Similarity=0.254 Sum_probs=74.6
Q ss_pred CCeEEEeeeeEEcCccc-------cccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCC
Q 027060 75 IPVVEARCMDEVYDALA-------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQD 146 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~-------~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~ 146 (229)
.++|+++||++.|+... ....+|+++||+|.+||++||+|+||||||||+|+|+|+++ |++|. .++|.+
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~---p~~G~I~~~g~~ 387 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE---SQGGEIIFNGQR 387 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCcEEEECCEE
Confidence 46899999999996210 01237999999999999999999999999999999999999 99997 888875
Q ss_pred HHH-----H-HhhcCCCcccCcc-----hhhhHHHHHHcc
Q 027060 147 PKE-----A-HARRGAPWTFNPL-----LLLNCLKNLRNQ 175 (229)
Q Consensus 147 ~~~-----~-~~~~~~~~~~~~~-----~~~tv~e~l~~~ 175 (229)
+.. . ..+..+.+.||.+ +.+++.+|+.+.
T Consensus 388 i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~ 427 (623)
T PRK10261 388 IDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEP 427 (623)
T ss_pred CCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHH
Confidence 321 1 1233455666653 237888888653
No 264
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.81 E-value=5.1e-20 Score=175.00 Aligned_cols=94 Identities=20% Similarity=0.237 Sum_probs=75.8
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA 152 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~ 152 (229)
.|+++||++.|++... .+|+|+||+|++|+.++|+|+||||||||+++|+|+++ |++|. .++|.++.. ...
T Consensus 341 ~i~~~~vsf~y~~~~~--~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~~ 415 (582)
T PRK11176 341 DIEFRNVTFTYPGKEV--PALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD---IDEGEILLDGHDLRDYTLASL 415 (582)
T ss_pred eEEEEEEEEecCCCCC--ccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC---CCCceEEECCEEhhhcCHHHH
Confidence 5999999999975321 27999999999999999999999999999999999999 99997 899986532 222
Q ss_pred hcCCCcccCcchh--hhHHHHHHcc
Q 027060 153 RRGAPWTFNPLLL--LNCLKNLRNQ 175 (229)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~ 175 (229)
+..+.+.+|.+.+ .|+++|+.++
T Consensus 416 ~~~i~~v~Q~~~lf~~Ti~~Ni~~~ 440 (582)
T PRK11176 416 RNQVALVSQNVHLFNDTIANNIAYA 440 (582)
T ss_pred HhhceEEccCceeecchHHHHHhcC
Confidence 3335555555443 7899999985
No 265
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.81 E-value=5.6e-20 Score=178.24 Aligned_cols=146 Identities=18% Similarity=0.177 Sum_probs=103.0
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA 152 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~ 152 (229)
.|+++||+++|++... .+|+|+||+|++||.++|+|+||||||||+++|+|+++ |++|. .++|.++.. ...
T Consensus 463 ~I~~~~vsf~Y~~~~~--~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~l~~~~~~~l 537 (694)
T TIGR03375 463 EIEFRNVSFAYPGQET--PALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ---PTEGSVLLDGVDIRQIDPADL 537 (694)
T ss_pred eEEEEEEEEEeCCCCc--cceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEhhhCCHHHH
Confidence 5999999999975321 27999999999999999999999999999999999999 99997 899987543 223
Q ss_pred hcCCCcccCcchh--hhHHHHHHcccccc--------------------CC------------CCCCCCCCchhhhhhcc
Q 027060 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVY--------------------AP------------SFDHGVGDPVEDDILVG 198 (229)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~--------------------~~------------~~~~~~~~~~~~~l~~~ 198 (229)
+..+.+.+|.+.+ .|++||+.++..-. .| ..+.|+.++...++++.
T Consensus 538 r~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall 617 (694)
T TIGR03375 538 RRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALL 617 (694)
T ss_pred HhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHh
Confidence 4445566666544 69999999864310 00 12233444444445555
Q ss_pred CCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 199 ~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
.+++++++||++-.||..+.+++.+.+..
T Consensus 618 ~~p~iliLDE~Ts~LD~~te~~i~~~l~~ 646 (694)
T TIGR03375 618 RDPPILLLDEPTSAMDNRSEERFKDRLKR 646 (694)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 55555555555555555567777776653
No 266
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.81 E-value=4.2e-20 Score=173.30 Aligned_cols=91 Identities=15% Similarity=0.227 Sum_probs=71.4
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----H
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----A 150 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----~ 150 (229)
++|+++|+++.|+ . +|+|+||+|.+||+++|+||||||||||+|+|+|+++ |++|. .++|+++.. .
T Consensus 264 ~~l~~~~l~~~~~--~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---p~~G~I~~~g~~~~~~~~~~ 334 (510)
T PRK09700 264 TVFEVRNVTSRDR--K----KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK---RAGGEIRLNGKDISPRSPLD 334 (510)
T ss_pred cEEEEeCccccCC--C----cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc---CCCCeEEECCEECCCCCHHH
Confidence 4799999998764 2 7999999999999999999999999999999999999 99997 888865321 1
Q ss_pred HhhcCCCcccCc------chhhhHHHHHHcc
Q 027060 151 HARRGAPWTFNP------LLLLNCLKNLRNQ 175 (229)
Q Consensus 151 ~~~~~~~~~~~~------~~~~tv~e~l~~~ 175 (229)
..+.++.+.+|. +..+++.+|+.++
T Consensus 335 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~ 365 (510)
T PRK09700 335 AVKKGMAYITESRRDNGFFPNFSIAQNMAIS 365 (510)
T ss_pred HHHCCcEEccCccccCCCcCCCcHHHHhccc
Confidence 122345555543 2237899998764
No 267
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.81 E-value=4.3e-20 Score=155.66 Aligned_cols=127 Identities=16% Similarity=0.220 Sum_probs=92.3
Q ss_pred cccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhcCCCcccCcchhhhHHH
Q 027060 92 QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARRGAPWTFNPLLLLNCLK 170 (229)
Q Consensus 92 ~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~~~~~~~~~~~~~tv~e 170 (229)
..+++|+||||++.+||.+||||+||||||||+|+|+|.++ |++|. .+.|+-... ...+.++.++ +|.+|
T Consensus 38 ~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~---Pt~G~v~v~G~v~~l--i~lg~Gf~pe----lTGre 108 (249)
T COG1134 38 AEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK---PTSGKVKVTGKVAPL--IELGAGFDPE----LTGRE 108 (249)
T ss_pred ceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC---CCCceEEEcceEehh--hhcccCCCcc----cchHH
Confidence 34679999999999999999999999999999999999999 99997 777753211 1123333322 45566
Q ss_pred HHHcccc-------------------------ccC--CCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHH
Q 027060 171 NLRNQGS-------------------------VYA--PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS 223 (229)
Q Consensus 171 ~l~~~~~-------------------------~~~--~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~ 223 (229)
|+.+... +.. ..|+.++.-|++-.++....+++|++|+.+..-|+-.+++..+
T Consensus 109 Ni~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~ 188 (249)
T COG1134 109 NIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLE 188 (249)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHH
Confidence 6554322 222 2466777778777777777888888888888888876666665
Q ss_pred HHhh
Q 027060 224 MFDE 227 (229)
Q Consensus 224 ~l~~ 227 (229)
.+.+
T Consensus 189 rl~e 192 (249)
T COG1134 189 RLNE 192 (249)
T ss_pred HHHH
Confidence 5544
No 268
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.81 E-value=8e-20 Score=158.88 Aligned_cols=146 Identities=18% Similarity=0.242 Sum_probs=103.5
Q ss_pred CCeEEEeeeeEEcCccc--------------------cccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhccc
Q 027060 75 IPVVEARCMDEVYDALA--------------------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI 134 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~--------------------~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~ 134 (229)
+..|+++||+|-||... .-+.-++|+||+|++|||+.|+|-+|||||||+|+|+++++
T Consensus 2 ~~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie-- 79 (386)
T COG4175 2 MVKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE-- 79 (386)
T ss_pred CceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC--
Confidence 45689999999997631 12345789999999999999999999999999999999999
Q ss_pred CCCCce-EecCCCHH-----H--HHhhcCCCcccCcc---hhhhHHHHHHccccccCC----------------------
Q 027060 135 WPQKAS-SFDSQDPK-----E--AHARRGAPWTFNPL---LLLNCLKNLRNQGSVYAP---------------------- 181 (229)
Q Consensus 135 ~p~~G~-~~~g~~~~-----~--~~~~~~~~~~~~~~---~~~tv~e~l~~~~~~~~~---------------------- 181 (229)
|++|+ .++|.++. . ..++..+.++||.+ ++.||++|+.|+..+..-
T Consensus 80 -pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~ 158 (386)
T COG4175 80 -PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYA 158 (386)
T ss_pred -CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhh
Confidence 99997 89998742 1 23344566666665 458999999998765421
Q ss_pred -----CCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHH
Q 027060 182 -----SFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS 223 (229)
Q Consensus 182 -----~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~ 223 (229)
..+.++.|++..+.++...+.||++|++|.-||+=-+.++.+
T Consensus 159 ~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQd 205 (386)
T COG4175 159 DKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQD 205 (386)
T ss_pred hcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHH
Confidence 223445555555555555555555555555555544544443
No 269
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.81 E-value=6.3e-20 Score=178.43 Aligned_cols=96 Identities=20% Similarity=0.199 Sum_probs=77.1
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA 152 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~ 152 (229)
.|+++||+++|++.. ...+|+|+||+|++||+++|+||||||||||+++|.|+++ |++|. .++|.++.+ ...
T Consensus 478 ~I~~~nVsf~Y~~~~-~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~idg~~i~~~~~~~l 553 (711)
T TIGR00958 478 LIEFQDVSFSYPNRP-DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ---PTGGQVLLDGVPLVQYDHHYL 553 (711)
T ss_pred eEEEEEEEEECCCCC-CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCEEEECCEEHHhcCHHHH
Confidence 599999999997532 1237999999999999999999999999999999999999 99997 899987643 222
Q ss_pred hcCCCcccCcchh--hhHHHHHHccc
Q 027060 153 RRGAPWTFNPLLL--LNCLKNLRNQG 176 (229)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~ 176 (229)
+..+.+.+|.+.+ .|++||+.++.
T Consensus 554 r~~i~~v~Q~~~lF~gTIreNI~~g~ 579 (711)
T TIGR00958 554 HRQVALVGQEPVLFSGSVRENIAYGL 579 (711)
T ss_pred HhhceEEecCccccccCHHHHHhcCC
Confidence 3345555555443 78999999864
No 270
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.81 E-value=2.8e-20 Score=194.42 Aligned_cols=149 Identities=13% Similarity=0.102 Sum_probs=102.3
Q ss_pred CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH--H
Q 027060 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE--A 150 (229)
Q Consensus 74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~--~ 150 (229)
...+|+++||+|.|++. ...+|+|+||+|++||++||+|+||||||||+|+|+|+++ |++|. .++|+++.. .
T Consensus 1934 ~~~~L~v~nLsK~Y~~~--~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~---ptsG~I~i~G~~i~~~~~ 2008 (2272)
T TIGR01257 1934 KTDILRLNELTKVYSGT--SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT---VTSGDATVAGKSILTNIS 2008 (2272)
T ss_pred CCceEEEEEEEEEECCC--CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEECCEECcchHH
Confidence 34589999999999852 1238999999999999999999999999999999999999 99997 888876521 1
Q ss_pred HhhcCCCcccCc---chhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCC
Q 027060 151 HARRGAPWTFNP---LLLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQ 200 (229)
Q Consensus 151 ~~~~~~~~~~~~---~~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~ 200 (229)
..+..+++.+|. ...+|+.|++.+...++. ..++.|+++++..++++..+
T Consensus 2009 ~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~ 2088 (2272)
T TIGR01257 2009 DVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGC 2088 (2272)
T ss_pred HHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 122234444443 334899999976433221 11223344444444445555
Q ss_pred ccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 201 HKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 201 ~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+++|++|||+..||...++.+.+++..
T Consensus 2089 P~VLLLDEPTsGLDp~sr~~l~~lL~~ 2115 (2272)
T TIGR01257 2089 PPLVLLDEPTTGMDPQARRMLWNTIVS 2115 (2272)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 555555555555555567777777654
No 271
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.81 E-value=1.2e-19 Score=158.07 Aligned_cols=144 Identities=19% Similarity=0.220 Sum_probs=93.9
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHhh
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHAR 153 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~~ 153 (229)
|+++|+++.|.+... .+|+|+||+|++||+++|+|+||||||||+++|+|+++ .+|. .++|.++.. ...+
T Consensus 3 i~~~nls~~~~~~~~--~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~----~~G~I~i~g~~i~~~~~~~lr 76 (275)
T cd03289 3 MTVKDLTAKYTEGGN--AVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN----TEGDIQIDGVSWNSVPLQKWR 76 (275)
T ss_pred EEEEEEEEEeCCCCC--cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC----CCcEEEECCEEhhhCCHHHHh
Confidence 789999999953211 27999999999999999999999999999999999986 4686 888876532 1222
Q ss_pred cCCCcccCcchh--hhHHHHHHcccccc-------------------CC------------CCCCCCCCchhhhhhccCC
Q 027060 154 RGAPWTFNPLLL--LNCLKNLRNQGSVY-------------------AP------------SFDHGVGDPVEDDILVGLQ 200 (229)
Q Consensus 154 ~~~~~~~~~~~~--~tv~e~l~~~~~~~-------------------~~------------~~~~~~~~~~~~~l~~~~~ 200 (229)
..+.+.+|.+.+ .|+++|+....... .+ .++.++.+++..+.++..+
T Consensus 77 ~~i~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~ 156 (275)
T cd03289 77 KAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSK 156 (275)
T ss_pred hhEEEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 334444443322 58889985321110 00 0233344444444455555
Q ss_pred ccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 201 HKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 201 ~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
++++++|+++..||.-..+.+.+.+..
T Consensus 157 p~illlDEpts~LD~~~~~~l~~~l~~ 183 (275)
T cd03289 157 AKILLLDEPSAHLDPITYQVIRKTLKQ 183 (275)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHH
Confidence 555555555555555567777776653
No 272
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=5.7e-20 Score=163.84 Aligned_cols=98 Identities=17% Similarity=0.218 Sum_probs=73.1
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhccc--CCCCce-EecCCCHHH---
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQDPKE--- 149 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~--~p~~G~-~~~g~~~~~--- 149 (229)
.+|+++|+++.|.+.. ..+|+|+||+|.+||++||+|+||||||||+++|+|+.... .|++|. .++|.++..
T Consensus 79 ~~i~~~nls~~y~~~~--~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 79 NVFEIRNFNFWYMNRT--KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred ceEEEEeeEEEecCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 4799999999996421 12799999999999999999999999999999999998510 146896 889987531
Q ss_pred --HHhhcCCCcccCcch--hhhHHHHHHcc
Q 027060 150 --AHARRGAPWTFNPLL--LLNCLKNLRNQ 175 (229)
Q Consensus 150 --~~~~~~~~~~~~~~~--~~tv~e~l~~~ 175 (229)
...+..+.+.+|.+. ..|+++|+.++
T Consensus 157 ~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~ 186 (329)
T PRK14257 157 SSLELRTRIGMVFQKPTPFEMSIFDNVAYG 186 (329)
T ss_pred chHhhhccEEEEecCCccCCCcHHHHHHhH
Confidence 122334444444432 27899999864
No 273
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=2.4e-19 Score=164.97 Aligned_cols=94 Identities=21% Similarity=0.214 Sum_probs=77.6
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH---Hh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA---HA 152 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~---~~ 152 (229)
.|+++||++.|+++. .+|+++||+|++||.+||+|+|||||||++|+|.++.. .+|. +++|+++... ..
T Consensus 351 ~I~F~dV~f~y~~k~---~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d----~sG~I~IdG~dik~~~~~Sl 423 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPKR---KVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD----YSGSILIDGQDIKEVSLESL 423 (591)
T ss_pred cEEEEeeEEEeCCCC---ceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc----cCCcEEECCeeHhhhChHHh
Confidence 499999999999764 27899999999999999999999999999999999986 7886 9999986542 23
Q ss_pred hcCCCcccCcchh--hhHHHHHHcccc
Q 027060 153 RRGAPWTFNPLLL--LNCLKNLRNQGS 177 (229)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~ 177 (229)
|.-++.++|+..+ .|++.|+.++..
T Consensus 424 R~~Ig~VPQd~~LFndTIl~NI~YGn~ 450 (591)
T KOG0057|consen 424 RQSIGVVPQDSVLFNDTILYNIKYGNP 450 (591)
T ss_pred hhheeEeCCcccccchhHHHHhhcCCC
Confidence 3445566665543 799999998743
No 274
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.81 E-value=8.8e-20 Score=173.86 Aligned_cols=94 Identities=19% Similarity=0.219 Sum_probs=75.0
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA 152 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~ 152 (229)
-|+++|+++.|++.. .+|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|. .++|.++.. ...
T Consensus 340 ~i~~~~v~f~y~~~~---~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~idg~~i~~~~~~~l 413 (592)
T PRK10790 340 RIDIDNVSFAYRDDN---LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP---LTEGEIRLDGRPLSSLSHSVL 413 (592)
T ss_pred eEEEEEEEEEeCCCC---ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCceEEECCEEhhhCCHHHH
Confidence 499999999997521 27999999999999999999999999999999999999 99997 899986542 122
Q ss_pred hcCCCcccCcchh--hhHHHHHHccc
Q 027060 153 RRGAPWTFNPLLL--LNCLKNLRNQG 176 (229)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~ 176 (229)
+..+.+.+|.+.+ -|+++|+.++.
T Consensus 414 ~~~i~~v~Q~~~lF~~Ti~~NI~~~~ 439 (592)
T PRK10790 414 RQGVAMVQQDPVVLADTFLANVTLGR 439 (592)
T ss_pred HhheEEEccCCccccchHHHHHHhCC
Confidence 3334444444433 68999998864
No 275
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.80 E-value=8.7e-20 Score=171.91 Aligned_cols=97 Identities=14% Similarity=0.202 Sum_probs=71.4
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC-----CCce-EecCCCHH
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQDPK 148 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p-----~~G~-~~~g~~~~ 148 (229)
.++|+++|+++.|++......+|+++||+|.+||++||+||||||||||+|+|+|+++ | ++|. .++|.++.
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~g~~i~ 79 (529)
T PRK15134 3 QPLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLP---SPPVVYPSGDIRFHGESLL 79 (529)
T ss_pred CceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC---CCcCCccceEEEECCEecc
Confidence 3579999999999741111238999999999999999999999999999999999998 6 6897 88887642
Q ss_pred H-----H--HhhcCCCcccCcc-----hhhhHHHHHHc
Q 027060 149 E-----A--HARRGAPWTFNPL-----LLLNCLKNLRN 174 (229)
Q Consensus 149 ~-----~--~~~~~~~~~~~~~-----~~~tv~e~l~~ 174 (229)
. . .++..+++.+|.. ..+++.+++.+
T Consensus 80 ~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~ 117 (529)
T PRK15134 80 HASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYE 117 (529)
T ss_pred cCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHH
Confidence 1 1 1123455555543 23577777653
No 276
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=5.9e-20 Score=172.18 Aligned_cols=97 Identities=15% Similarity=0.172 Sum_probs=72.7
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC-CCce-EecCCCHH----
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKAS-SFDSQDPK---- 148 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p-~~G~-~~~g~~~~---- 148 (229)
.++|+++|+++.|+... ...+|+|+||+|++||+++|+|+||||||||+|+|+|+++ | ++|. .++|+++.
T Consensus 257 ~~~l~~~~l~~~~~~~~-~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---~~~~G~i~~~g~~~~~~~~ 332 (506)
T PRK13549 257 EVILEVRNLTAWDPVNP-HIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYP---GRWEGEIFIDGKPVKIRNP 332 (506)
T ss_pred CceEEEecCcccccccc-ccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCC---CCCCcEEEECCEECCCCCH
Confidence 34799999999994210 1127999999999999999999999999999999999987 6 8997 78886532
Q ss_pred HHHhhcCCCcccCcc------hhhhHHHHHHcc
Q 027060 149 EAHARRGAPWTFNPL------LLLNCLKNLRNQ 175 (229)
Q Consensus 149 ~~~~~~~~~~~~~~~------~~~tv~e~l~~~ 175 (229)
....+.++.+.+|.. ..+++.+|+.++
T Consensus 333 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~ 365 (506)
T PRK13549 333 QQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLA 365 (506)
T ss_pred HHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhh
Confidence 112234455555542 237899988754
No 277
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.80 E-value=8.6e-20 Score=173.56 Aligned_cols=95 Identities=22% Similarity=0.231 Sum_probs=75.6
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA 152 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~ 152 (229)
.|+++||++.|++... .+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|. .++|.++.. ...
T Consensus 338 ~i~~~~v~f~y~~~~~--~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~---p~~G~I~i~g~~i~~~~~~~~ 412 (574)
T PRK11160 338 SLTLNNVSFTYPDQPQ--PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD---PQQGEILLNGQPIADYSEAAL 412 (574)
T ss_pred eEEEEEEEEECCCCCC--cceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEhhhCCHHHH
Confidence 5999999999975321 27999999999999999999999999999999999999 99997 889886532 222
Q ss_pred hcCCCcccCcchh--hhHHHHHHccc
Q 027060 153 RRGAPWTFNPLLL--LNCLKNLRNQG 176 (229)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~ 176 (229)
+..+.+.+|.+.+ .|+.||+.++.
T Consensus 413 r~~i~~v~Q~~~lf~~ti~~Ni~~~~ 438 (574)
T PRK11160 413 RQAISVVSQRVHLFSATLRDNLLLAA 438 (574)
T ss_pred HhheeEEcccchhhcccHHHHhhcCC
Confidence 3334445555433 68999998753
No 278
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=5.6e-20 Score=149.48 Aligned_cols=97 Identities=19% Similarity=0.205 Sum_probs=75.6
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHh--h
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHA--R 153 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~--~ 153 (229)
+++.+|++..-++.. +|.++||++.+||++-|.||||||||||||+|+|++. |++|+ .+.|..+...+. .
T Consensus 2 ~L~a~~L~~~R~e~~----lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~---p~~G~v~~~~~~i~~~~~~~~ 74 (209)
T COG4133 2 MLEAENLSCERGERT----LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR---PDAGEVYWQGEPIQNVRESYH 74 (209)
T ss_pred cchhhhhhhccCcce----eecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC---CCCCeEEecCCCCccchhhHH
Confidence 477888988887765 8999999999999999999999999999999999999 99997 888775433221 1
Q ss_pred cC---CCcccCcchhhhHHHHHHccccccC
Q 027060 154 RG---APWTFNPLLLLNCLKNLRNQGSVYA 180 (229)
Q Consensus 154 ~~---~~~~~~~~~~~tv~e~l~~~~~~~~ 180 (229)
.. ++-..-....+|++||+.|...++.
T Consensus 75 ~~l~yLGH~~giK~eLTa~ENL~F~~~~~~ 104 (209)
T COG4133 75 QALLYLGHQPGIKTELTALENLHFWQRFHG 104 (209)
T ss_pred HHHHHhhccccccchhhHHHHHHHHHHHhC
Confidence 11 1233333445999999999766554
No 279
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.80 E-value=7.8e-20 Score=171.86 Aligned_cols=149 Identities=20% Similarity=0.292 Sum_probs=94.0
Q ss_pred CCeEEEeeeeEEcCcc-ccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-Eec-CCC---HH
Q 027060 75 IPVVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFD-SQD---PK 148 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~-~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~-g~~---~~ 148 (229)
.++|+++|+++.|++. .....+|+++||+|.+||+++|+||||||||||+|+|+|+++ |++|. .++ |.+ +.
T Consensus 277 ~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~~g~~~~~~~ 353 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE---PTSGEVNVRVGDEWVDMT 353 (520)
T ss_pred CceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEEecCCcccccc
Confidence 4589999999999531 011127999999999999999999999999999999999999 99997 664 532 11
Q ss_pred -----H-HHhhcCCCcccCc---chhhhHHHHHHccccccCC-------------CCCCC------CCCchhhhhhccCC
Q 027060 149 -----E-AHARRGAPWTFNP---LLLLNCLKNLRNQGSVYAP-------------SFDHG------VGDPVEDDILVGLQ 200 (229)
Q Consensus 149 -----~-~~~~~~~~~~~~~---~~~~tv~e~l~~~~~~~~~-------------~~~~~------~~~~~~~~l~~~~~ 200 (229)
. ...+..+.+.+|. +..+++.+|+.+......+ .+... ..++....++.|++
T Consensus 354 ~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~ 433 (520)
T TIGR03269 354 KPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGER 433 (520)
T ss_pred ccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHH
Confidence 0 1112233444443 2337899998753111000 00000 11333445555555
Q ss_pred ccE-----EEecCCeeeeccc-------CHHHHHHHHh
Q 027060 201 HKV-----VIVDGNYLFLDGG-------VWKDVSSMFD 226 (229)
Q Consensus 201 ~rv-----Li~d~~~LlLDEP-------~~~~l~~~l~ 226 (229)
+|+ |+.+|++++|||| ..+.+.+++.
T Consensus 434 qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~ 471 (520)
T TIGR03269 434 HRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSIL 471 (520)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 554 5556666666666 4666766664
No 280
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.80 E-value=3.6e-20 Score=151.53 Aligned_cols=112 Identities=14% Similarity=0.162 Sum_probs=89.8
Q ss_pred eeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhcCCCcc
Q 027060 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARRGAPWT 159 (229)
Q Consensus 81 ~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~~~~~~ 159 (229)
.||++.|++.. ++++ +|+|++||+++|+||||||||||+|+|+|+++ |++|. .++|.+ +.+.
T Consensus 4 ~~l~~~~~~~~----~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~---------i~~~ 66 (177)
T cd03222 4 PDCVKRYGVFF----LLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLI---PNGDNDEWDGIT---------PVYK 66 (177)
T ss_pred CCeEEEECCEE----EEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCCcEEEECCEE---------EEEE
Confidence 58999998764 6777 49999999999999999999999999999999 99997 777642 1222
Q ss_pred cCcchhhhHHHHHHccccccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 160 FNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 160 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+|... ++.++.+++..+.++..+++++++|+++..||...++.+.+++..
T Consensus 67 ~q~~~------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~ 116 (177)
T cd03222 67 PQYID------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRR 116 (177)
T ss_pred cccCC------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 22211 566778888888888888888888888888888888888777754
No 281
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.80 E-value=1.2e-19 Score=173.05 Aligned_cols=145 Identities=19% Similarity=0.185 Sum_probs=99.6
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA 152 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~ 152 (229)
.|+++||++.|++.. .+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|. .++|.++.. ...
T Consensus 334 ~i~~~~v~~~y~~~~---~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~~~~~~~~~~ 407 (585)
T TIGR01192 334 AVEFRHITFEFANSS---QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD---PTVGQILIDGIDINTVTRESL 407 (585)
T ss_pred eEEEEEEEEECCCCC---ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCC---CCCCEEEECCEEhhhCCHHHH
Confidence 599999999997532 27999999999999999999999999999999999999 99997 888876432 122
Q ss_pred hcCCCcccCcchh--hhHHHHHHcccccc--------------------CC------------CCCCCCCCchhhhhhcc
Q 027060 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVY--------------------AP------------SFDHGVGDPVEDDILVG 198 (229)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~--------------------~~------------~~~~~~~~~~~~~l~~~ 198 (229)
+..+.+.+|.+.+ .|++||+.++.... .+ ..+.++.+++..++++.
T Consensus 408 ~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall 487 (585)
T TIGR01192 408 RKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAIL 487 (585)
T ss_pred HhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHh
Confidence 2334444444332 78999998753210 00 11223344444444555
Q ss_pred CCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 199 ~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
.+++++++||++..||..+++.+.+.+..
T Consensus 488 ~~p~ililDEpts~LD~~~~~~i~~~l~~ 516 (585)
T TIGR01192 488 KNAPILVLDEATSALDVETEARVKNAIDA 516 (585)
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence 55555666666666666567777776653
No 282
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.80 E-value=1.1e-19 Score=173.09 Aligned_cols=93 Identities=28% Similarity=0.328 Sum_probs=75.5
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA 152 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~ 152 (229)
.|+++||++.|++.. .+|+|+||++++|++++|+|+||||||||+++|+|+++ |.+|. .++|.++.. ...
T Consensus 334 ~I~~~~vsf~y~~~~---~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~---p~~G~I~i~g~~i~~~~~~~~ 407 (588)
T PRK13657 334 AVEFDDVSFSYDNSR---QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFD---PQSGRILIDGTDIRTVTRASL 407 (588)
T ss_pred eEEEEEEEEEeCCCC---ceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEEhhhCCHHHH
Confidence 599999999997531 27999999999999999999999999999999999999 99997 899876532 222
Q ss_pred hcCCCcccCcchh--hhHHHHHHcc
Q 027060 153 RRGAPWTFNPLLL--LNCLKNLRNQ 175 (229)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~ 175 (229)
+..+.+.+|.+.+ .|++||+.++
T Consensus 408 r~~i~~v~Q~~~lf~~Ti~~Ni~~~ 432 (588)
T PRK13657 408 RRNIAVVFQDAGLFNRSIEDNIRVG 432 (588)
T ss_pred HhheEEEecCcccccccHHHHHhcC
Confidence 3335555555543 6899999986
No 283
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.80 E-value=7.5e-20 Score=173.38 Aligned_cols=86 Identities=20% Similarity=0.268 Sum_probs=68.4
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhh
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHAR 153 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~ 153 (229)
.++|+++||++.|+++. +|+|+||+|.+||++||+|+||||||||+++|+|+++ |++|. .+ +.+. +
T Consensus 322 ~~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~---p~~G~i~~-~~~~-----~ 388 (556)
T PRK11819 322 DKVIEAENLSKSFGDRL----LIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ---PDSGTIKI-GETV-----K 388 (556)
T ss_pred CeEEEEEeEEEEECCee----eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEE-CCce-----E
Confidence 35899999999998754 8999999999999999999999999999999999999 99997 55 4321 2
Q ss_pred cCCCcccCc----chhhhHHHHHHcc
Q 027060 154 RGAPWTFNP----LLLLNCLKNLRNQ 175 (229)
Q Consensus 154 ~~~~~~~~~----~~~~tv~e~l~~~ 175 (229)
++ +.+|. +..+|+.+|+.++
T Consensus 389 i~--~v~q~~~~~~~~~tv~e~l~~~ 412 (556)
T PRK11819 389 LA--YVDQSRDALDPNKTVWEEISGG 412 (556)
T ss_pred EE--EEeCchhhcCCCCCHHHHHHhh
Confidence 23 33332 2236888888764
No 284
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.80 E-value=8.3e-20 Score=172.94 Aligned_cols=86 Identities=20% Similarity=0.254 Sum_probs=68.6
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhh
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHAR 153 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~ 153 (229)
.++|+++|+++.|++.. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++|. .+ +.+. .
T Consensus 320 ~~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~G~i~~-~~~~-----~ 386 (552)
T TIGR03719 320 DKVIEAENLSKGFGDKL----LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ---PDSGTIKI-GETV-----K 386 (552)
T ss_pred CeEEEEeeEEEEECCee----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCeEEEE-CCce-----E
Confidence 45899999999998754 8999999999999999999999999999999999999 99997 55 4322 2
Q ss_pred cCCCcccCc----chhhhHHHHHHcc
Q 027060 154 RGAPWTFNP----LLLLNCLKNLRNQ 175 (229)
Q Consensus 154 ~~~~~~~~~----~~~~tv~e~l~~~ 175 (229)
++ +.+|. +..+|+.+|+.++
T Consensus 387 i~--~v~q~~~~~~~~~tv~e~l~~~ 410 (552)
T TIGR03719 387 LA--YVDQSRDALDPNKTVWEEISGG 410 (552)
T ss_pred EE--EEeCCccccCCCCcHHHHHHhh
Confidence 23 33332 2236888888764
No 285
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.80 E-value=3.5e-19 Score=142.19 Aligned_cols=144 Identities=19% Similarity=0.208 Sum_probs=110.7
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCH--------
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDP-------- 147 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~-------- 147 (229)
.|+++++++.||... +|.||+|+-+.||.+.++||+|+|||||+|.|+-+.- |.+|. .+.|...
T Consensus 2 sirv~~in~~yg~~q----~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~---p~sg~l~ia~~~fd~s~~~~~ 74 (242)
T COG4161 2 SIQLNGINCFYGAHQ----ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM---PRSGTLNIAGNHFDFSKTPSD 74 (242)
T ss_pred ceEEcccccccccch----heeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC---CCCCeEEecccccccccCccH
Confidence 389999999999876 8899999999999999999999999999999999988 99998 6766521
Q ss_pred -HHHHhhcCCCcccCcch---hhhHHHHHHcccc-cc---------------------------CCCCCCCCCCchhhhh
Q 027060 148 -KEAHARRGAPWTFNPLL---LLNCLKNLRNQGS-VY---------------------------APSFDHGVGDPVEDDI 195 (229)
Q Consensus 148 -~~~~~~~~~~~~~~~~~---~~tv~e~l~~~~~-~~---------------------------~~~~~~~~~~~~~~~l 195 (229)
.....|..++++||.+. .+||.+|+..... .. --..+.++.++++.+.
T Consensus 75 k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiar 154 (242)
T COG4161 75 KAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIAR 154 (242)
T ss_pred HHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHH
Confidence 11223444555665554 4899999975311 00 0123456778888888
Q ss_pred hccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 196 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 196 ~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
++.+++.+|++|++...||+.-..++.+++.+
T Consensus 155 almmkpqvllfdeptaaldpeitaqvv~iike 186 (242)
T COG4161 155 ALMMEPQVLLFDEPTAALDPEITAQIVSIIKE 186 (242)
T ss_pred HHhcCCcEEeecCcccccCHHHHHHHHHHHHH
Confidence 88888888888888888888878888888765
No 286
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.80 E-value=8.6e-20 Score=170.75 Aligned_cols=93 Identities=17% Similarity=0.177 Sum_probs=71.3
Q ss_pred CeEEEeeeeEEcC---ccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC-CCce-EecCCCHH--
Q 027060 76 PVVEARCMDEVYD---ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKAS-SFDSQDPK-- 148 (229)
Q Consensus 76 ~~i~~~~ls~~y~---~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p-~~G~-~~~g~~~~-- 148 (229)
++|+++|+++.|+ +.. +|+++||+|.+||+++|+||||||||||+|+|+|+++ | ++|. .++|+++.
T Consensus 256 ~~l~~~~l~~~~~~~~~~~----~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~~G~i~~~g~~~~~~ 328 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRK----RVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYP---GKFEGNVFINGKPVDIR 328 (500)
T ss_pred ceEEEeCCccccccccccc----ccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCC---CCCCeEEEECCEECCCC
Confidence 4799999999994 222 7999999999999999999999999999999999998 7 7997 88886542
Q ss_pred --HHHhhcCCCcccCcc------hhhhHHHHHHcc
Q 027060 149 --EAHARRGAPWTFNPL------LLLNCLKNLRNQ 175 (229)
Q Consensus 149 --~~~~~~~~~~~~~~~------~~~tv~e~l~~~ 175 (229)
....+..+.+.+|.. +.+|+.+|+.++
T Consensus 329 ~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~ 363 (500)
T TIGR02633 329 NPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLS 363 (500)
T ss_pred CHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcch
Confidence 112233454544442 236888888663
No 287
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.80 E-value=1.1e-19 Score=155.32 Aligned_cols=68 Identities=21% Similarity=0.367 Sum_probs=57.7
Q ss_pred eEEEeeeeEEcCc-----------------cccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc
Q 027060 77 VVEARCMDEVYDA-----------------LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (229)
Q Consensus 77 ~i~~~~ls~~y~~-----------------~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G 139 (229)
+|.++|++|.|.- +...+.++.||||+|++|+++|++|+|||||||++|+|+|++. |++|
T Consensus 3 ~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~---p~~G 79 (325)
T COG4586 3 MIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL---PTSG 79 (325)
T ss_pred eeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc---cCCC
Confidence 5777888777731 1123558899999999999999999999999999999999999 9999
Q ss_pred e-EecCCCH
Q 027060 140 S-SFDSQDP 147 (229)
Q Consensus 140 ~-~~~g~~~ 147 (229)
. .+.|.++
T Consensus 80 ~v~V~G~~P 88 (325)
T COG4586 80 KVRVNGKDP 88 (325)
T ss_pred eEEecCcCc
Confidence 7 9999865
No 288
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.80 E-value=3.8e-20 Score=156.90 Aligned_cols=128 Identities=16% Similarity=0.193 Sum_probs=81.4
Q ss_pred ccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhcCC-CcccCcchhhhHHHHHHc
Q 027060 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARRGA-PWTFNPLLLLNCLKNLRN 174 (229)
Q Consensus 97 l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~~~-~~~~~~~~~~tv~e~l~~ 174 (229)
|+++||+|.+|++++|+|+||||||||+++|+|+++ |++|. .++|+++.......++ ++.+..+..+++.+|+.+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~ 77 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ---PTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIAL 77 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHH
Confidence 469999999999999999999999999999999999 99997 8888754321111232 333222333788898876
Q ss_pred cccc--c-C--------------------------CCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHH
Q 027060 175 QGSV--Y-A--------------------------PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 225 (229)
Q Consensus 175 ~~~~--~-~--------------------------~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l 225 (229)
+... . . ..++.++.+++..+.++..++++|++|+|+..||...++.+.+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l 157 (230)
T TIGR01184 78 AVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEEL 157 (230)
T ss_pred HHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHH
Confidence 4210 0 0 011123333444444444455555555555555555677777776
Q ss_pred hh
Q 027060 226 DE 227 (229)
Q Consensus 226 ~~ 227 (229)
..
T Consensus 158 ~~ 159 (230)
T TIGR01184 158 MQ 159 (230)
T ss_pred HH
Confidence 53
No 289
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.80 E-value=2.6e-19 Score=169.70 Aligned_cols=146 Identities=20% Similarity=0.216 Sum_probs=100.2
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA 152 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~ 152 (229)
-|+++||+++|++... .+|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|. .++|.++.. ...
T Consensus 330 ~i~~~~v~f~y~~~~~--~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~---~~~G~I~i~g~~i~~~~~~~~ 404 (571)
T TIGR02203 330 DVEFRNVTFRYPGRDR--PALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE---PDSGQILLDGHDLADYTLASL 404 (571)
T ss_pred eEEEEEEEEEcCCCCC--ccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEeHHhcCHHHH
Confidence 4999999999975321 27999999999999999999999999999999999999 99997 889876542 222
Q ss_pred hcCCCcccCcchh--hhHHHHHHcccc--cc-------------------CC------------CCCCCCCCchhhhhhc
Q 027060 153 RRGAPWTFNPLLL--LNCLKNLRNQGS--VY-------------------AP------------SFDHGVGDPVEDDILV 197 (229)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~--~~-------------------~~------------~~~~~~~~~~~~~l~~ 197 (229)
+..+.+.+|.+.+ .|+++|+.++.. .. .| ..+.|+.+|...++++
T Consensus 405 ~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARal 484 (571)
T TIGR02203 405 RRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARAL 484 (571)
T ss_pred HhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHH
Confidence 3345555555543 689999987632 10 00 1122333444444444
Q ss_pred cCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 198 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 198 ~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
..+++++++||++.-||+.+.+.+.+.+..
T Consensus 485 l~~~~illLDEpts~LD~~~~~~i~~~L~~ 514 (571)
T TIGR02203 485 LKDAPILILDEATSALDNESERLVQAALER 514 (571)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 445555555555555555567777766543
No 290
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.80 E-value=2.3e-19 Score=170.21 Aligned_cols=96 Identities=27% Similarity=0.332 Sum_probs=76.1
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA 152 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~ 152 (229)
.|+++||++.|++... ..+|+|+||+|++||+++|+|+||||||||+++|+|+++ |.+|. .++|.++.. ...
T Consensus 337 ~i~~~~v~f~y~~~~~-~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~---p~~G~I~i~g~~i~~~~~~~~ 412 (576)
T TIGR02204 337 EIEFEQVNFAYPARPD-QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD---PQSGRILLDGVDLRQLDPAEL 412 (576)
T ss_pred eEEEEEEEEECCCCCC-CccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCEEEECCEEHHhcCHHHH
Confidence 5999999999975211 127999999999999999999999999999999999999 99997 889876532 222
Q ss_pred hcCCCcccCcchh--hhHHHHHHccc
Q 027060 153 RRGAPWTFNPLLL--LNCLKNLRNQG 176 (229)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~ 176 (229)
+..+.+.+|.+.+ .|++||+.++.
T Consensus 413 ~~~i~~~~Q~~~lf~~Ti~~Ni~~~~ 438 (576)
T TIGR02204 413 RARMALVPQDPVLFAASVMENIRYGR 438 (576)
T ss_pred HHhceEEccCCccccccHHHHHhcCC
Confidence 3345555555543 68999998753
No 291
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=1e-19 Score=145.33 Aligned_cols=120 Identities=20% Similarity=0.276 Sum_probs=95.6
Q ss_pred EeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHhhcC
Q 027060 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHARRG 155 (229)
Q Consensus 80 ~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~~~~ 155 (229)
++++++.|.+.. +++++||+|.+|++++|+|+||||||||+++|+|+++ |++|. .++|.+... ......
T Consensus 2 ~~~~~~~~~~~~----~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~---~~~G~i~~~~~~~~~~~~~~~~~~ 74 (157)
T cd00267 2 IENLSFRYGGRT----ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK---PTSGEILIDGKDIAKLPLEELRRR 74 (157)
T ss_pred eEEEEEEeCCee----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccCCHHHHHhc
Confidence 678999997653 8999999999999999999999999999999999999 99997 888765321 111222
Q ss_pred CCcccCcchhhhHHHHHHccccccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 156 APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 156 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+.+.+| ++.++.+++....++...++++++|+++..||...+..+.+++..
T Consensus 75 i~~~~q---------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~ 125 (157)
T cd00267 75 IGYVPQ---------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRE 125 (157)
T ss_pred eEEEee---------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 333333 666777887777888888888999999989988888888877754
No 292
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1e-19 Score=175.01 Aligned_cols=63 Identities=22% Similarity=0.313 Sum_probs=57.6
Q ss_pred CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-Eec
Q 027060 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFD 143 (229)
Q Consensus 74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~ 143 (229)
+.++|+++||++.|++.. +|+++||+|.+|+++||+||||||||||+|+|+|+++ |++|. .+.
T Consensus 309 ~~~~l~~~~l~~~y~~~~----il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~---p~~G~i~~~ 372 (638)
T PRK10636 309 PNPLLKMEKVSAGYGDRI----ILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA---PVSGEIGLA 372 (638)
T ss_pred CCceEEEEeeEEEeCCee----eeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEEC
Confidence 456899999999998754 8999999999999999999999999999999999999 99997 554
No 293
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.79 E-value=2.1e-19 Score=174.26 Aligned_cols=146 Identities=19% Similarity=0.164 Sum_probs=100.0
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA 152 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~ 152 (229)
.|+++||+++|++... .+|+|+||+|++|+.++|+|+||||||||+++|+|++. |++|. .++|.++.. ...
T Consensus 455 ~i~~~~vsf~y~~~~~--~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~---p~~G~I~idg~~i~~~~~~~~ 529 (694)
T TIGR01846 455 AITFENIRFRYAPDSP--EVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT---PQHGQVLVDGVDLAIADPAWL 529 (694)
T ss_pred eEEEEEEEEEcCCCCc--cccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEehhhCCHHHH
Confidence 5999999999964321 27999999999999999999999999999999999999 99997 899987532 222
Q ss_pred hcCCCcccCcchh--hhHHHHHHcccccc--------------------C------------CCCCCCCCCchhhhhhcc
Q 027060 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVY--------------------A------------PSFDHGVGDPVEDDILVG 198 (229)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~--------------------~------------~~~~~~~~~~~~~~l~~~ 198 (229)
+..+.+.+|...+ .|++||+.++..-. . ...+.++.++...++++.
T Consensus 530 r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall 609 (694)
T TIGR01846 530 RRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALV 609 (694)
T ss_pred HHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHH
Confidence 3344455555433 78999998753210 0 011223334444444444
Q ss_pred CCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 199 ~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
.+++++++||++-.||..+.+++.+.+..
T Consensus 610 ~~~~ililDEpts~LD~~~~~~i~~~l~~ 638 (694)
T TIGR01846 610 GNPRILIFDEATSALDYESEALIMRNMRE 638 (694)
T ss_pred hCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 55555555555555555567777766653
No 294
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.6e-19 Score=170.08 Aligned_cols=62 Identities=18% Similarity=0.315 Sum_probs=57.4
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecC
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS 144 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g 144 (229)
++|+++|+++.|++.. +|+++||+|.+|++++|+||||||||||+++|+|+++ |++|. .++|
T Consensus 318 ~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~---p~~G~i~~~~ 380 (530)
T PRK15064 318 NALEVENLTKGFDNGP----LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE---PDSGTVKWSE 380 (530)
T ss_pred ceEEEEeeEEeeCCce----eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECC
Confidence 4899999999998754 7999999999999999999999999999999999999 99997 6666
No 295
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=2.7e-19 Score=164.38 Aligned_cols=147 Identities=16% Similarity=0.097 Sum_probs=107.1
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----H
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-----A 150 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-----~ 150 (229)
.++++||+++|++.. ..+|+|+||++++||.++|+|++|||||||+.+|+|.+. |++|+ .+.|.++.. .
T Consensus 336 ~l~~~~vsF~y~~~~--~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~---~~~G~i~~~g~~~~~l~~~~~ 410 (573)
T COG4987 336 ALELRNVSFTYPGQQ--TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD---PQQGSITLNGVEIASLDEQAL 410 (573)
T ss_pred eeeeccceeecCCCc--cchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC---CCCCeeeECCcChhhCChhhH
Confidence 799999999998853 348999999999999999999999999999999999999 99997 889876532 2
Q ss_pred HhhcCCCcccCcchhhhHHHHHHcccccc--------------------------------CCCCCCCCCCchhhhhhcc
Q 027060 151 HARRGAPWTFNPLLLLNCLKNLRNQGSVY--------------------------------APSFDHGVGDPVEDDILVG 198 (229)
Q Consensus 151 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~--------------------------------~~~~~~~~~~~~~~~l~~~ 198 (229)
+..+++..+-.....-|+++|+.+...-- ...++.+..+|...++.+.
T Consensus 411 ~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL 490 (573)
T COG4987 411 RETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALL 490 (573)
T ss_pred HHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHH
Confidence 22333322222222368888888753210 1123345555655555555
Q ss_pred CCccEEEecCCeeeecccCHHHHHHHHhhh
Q 027060 199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 228 (229)
Q Consensus 199 ~~~rvLi~d~~~LlLDEP~~~~l~~~l~~~ 228 (229)
.++.++++|||+-.||..+.+++.+++.+.
T Consensus 491 ~dapl~lLDEPTegLD~~TE~~vL~ll~~~ 520 (573)
T COG4987 491 HDAPLWLLDEPTEGLDPITERQVLALLFEH 520 (573)
T ss_pred cCCCeEEecCCcccCChhhHHHHHHHHHHH
Confidence 666777777777777777899999888764
No 296
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.79 E-value=1.6e-19 Score=168.62 Aligned_cols=66 Identities=21% Similarity=0.185 Sum_probs=58.4
Q ss_pred CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC-CCce-EecCCC
Q 027060 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKAS-SFDSQD 146 (229)
Q Consensus 74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p-~~G~-~~~g~~ 146 (229)
..++|+++|+++.|++.. +|+++||+|.+||+++|+||||||||||+|+|+|+++ + ++|. .++|++
T Consensus 257 ~~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~---~~~~G~i~~~g~~ 324 (490)
T PRK10938 257 NEPRIVLNNGVVSYNDRP----ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHP---QGYSNDLTLFGRR 324 (490)
T ss_pred CCceEEEeceEEEECCee----EEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---cccCCeEEEeccc
Confidence 345899999999998654 7999999999999999999999999999999999876 5 5896 888864
No 297
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.79 E-value=2.8e-19 Score=169.67 Aligned_cols=94 Identities=20% Similarity=0.254 Sum_probs=76.1
Q ss_pred eEEEeeeeEEcCc-cccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HH
Q 027060 77 VVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AH 151 (229)
Q Consensus 77 ~i~~~~ls~~y~~-~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~ 151 (229)
-|+++||++.|++ .. +|+|+||+|++||++||+||||||||||+++|.+++. |++|. .++|.++.. ..
T Consensus 328 ~I~f~~vsf~y~~~~~----vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~---~~~G~I~idg~dI~~i~~~~ 400 (567)
T COG1132 328 SIEFENVSFSYPGKKP----VLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD---PTSGEILIDGIDIRDISLDS 400 (567)
T ss_pred eEEEEEEEEEcCCCCc----cccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCeEEECCEehhhcCHHH
Confidence 3999999999984 44 8999999999999999999999999999999999999 99997 888887543 22
Q ss_pred hhcCCCcccCcchh--hhHHHHHHcccc
Q 027060 152 ARRGAPWTFNPLLL--LNCLKNLRNQGS 177 (229)
Q Consensus 152 ~~~~~~~~~~~~~~--~tv~e~l~~~~~ 177 (229)
.+..+..++|+..+ -|+.+|+.++..
T Consensus 401 lr~~I~~V~Qd~~LF~~TI~~NI~~g~~ 428 (567)
T COG1132 401 LRKRIGIVSQDPLLFSGTIRENIALGRP 428 (567)
T ss_pred HHHhccEEcccceeecccHHHHHhcCCC
Confidence 23334444444433 789999999853
No 298
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.79 E-value=2.5e-19 Score=170.26 Aligned_cols=145 Identities=15% Similarity=0.196 Sum_probs=97.8
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA 152 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~ 152 (229)
.|+++++++.|++.. ..+|+++||+|++|++++|+||||||||||+++|+|+++ |++|. .++|.++.. ...
T Consensus 313 ~I~~~~v~~~y~~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~---p~~G~i~~~g~~~~~~~~~~~ 387 (569)
T PRK10789 313 ELDVNIRQFTYPQTD--HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD---VSEGDIRFHDIPLTKLQLDSW 387 (569)
T ss_pred cEEEEEEEEECCCCC--CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCEEEECCEEHhhCCHHHH
Confidence 489999999997531 127999999999999999999999999999999999999 99997 888886532 122
Q ss_pred hcCCCcccCcchh--hhHHHHHHccccccC--------------------C------------CCCCCCCCchhhhhhcc
Q 027060 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA--------------------P------------SFDHGVGDPVEDDILVG 198 (229)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~--------------------~------------~~~~~~~~~~~~~l~~~ 198 (229)
+..+.+.+|.+.+ .|++||+.++..... | ..+.++.+|+..++++.
T Consensus 388 ~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall 467 (569)
T PRK10789 388 RSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALL 467 (569)
T ss_pred HhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHh
Confidence 2334444444432 689999987632100 0 01123334444444444
Q ss_pred CCccEEEecCCeeeecccCHHHHHHHHh
Q 027060 199 LQHKVVIVDGNYLFLDGGVWKDVSSMFD 226 (229)
Q Consensus 199 ~~~rvLi~d~~~LlLDEP~~~~l~~~l~ 226 (229)
.+++++++|+++..||..+.+.+.+.+.
T Consensus 468 ~~~~illlDEpts~LD~~~~~~i~~~l~ 495 (569)
T PRK10789 468 LNAEILILDDALSAVDGRTEHQILHNLR 495 (569)
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHH
Confidence 5555555555555555556777766664
No 299
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.79 E-value=2e-19 Score=155.77 Aligned_cols=141 Identities=13% Similarity=0.181 Sum_probs=90.3
Q ss_pred eEEEeeeeEEcCcc----------------ccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce
Q 027060 77 VVEARCMDEVYDAL----------------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (229)
Q Consensus 77 ~i~~~~ls~~y~~~----------------~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~ 140 (229)
-|+++||.+.|... .....+|+++||+|.+|++++|+|+||||||||+++|+|+++ |++|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~---p~~G~ 80 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS---PTVGK 80 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceE
Confidence 48888998888542 122347899999999999999999999999999999999999 99997
Q ss_pred -EecCCCHHHHHhhcCCCcccCcchhhhHHHHHHccccc---------------------------cCCCCCCCCCCchh
Q 027060 141 -SFDSQDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSV---------------------------YAPSFDHGVGDPVE 192 (229)
Q Consensus 141 -~~~g~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~---------------------------~~~~~~~~~~~~~~ 192 (229)
.++|.... +.+.......+++.+|+.+.... ....++.++.+++.
T Consensus 81 I~~~g~~~~-------~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~ 153 (264)
T PRK13546 81 VDRNGEVSV-------IAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLG 153 (264)
T ss_pred EEECCEEeE-------EecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHH
Confidence 77764100 00011111124455555432100 01123334445555
Q ss_pred hhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 193 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 193 ~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
.+.++..++++|++|+|+..||......+.+++..
T Consensus 154 Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~ 188 (264)
T PRK13546 154 FSINITVNPDILVIDEALSVGDQTFAQKCLDKIYE 188 (264)
T ss_pred HHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 55555556666666666666666667777776643
No 300
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.2e-19 Score=151.78 Aligned_cols=138 Identities=19% Similarity=0.232 Sum_probs=95.5
Q ss_pred CCeEEEeeeeEEcCcc-ccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH----
Q 027060 75 IPVVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK---- 148 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~-~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~---- 148 (229)
|.+++++||+..-.++ . +|+++|++|++||+.+|+||||||||||.++|+|.-. --+++|. .++|+++.
T Consensus 1 m~~L~I~dLhv~v~~~ke----ILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~-Y~Vt~G~I~~~GedI~~l~~ 75 (251)
T COG0396 1 MMMLEIKDLHVEVEGKKE----ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK-YEVTEGEILFDGEDILELSP 75 (251)
T ss_pred CceeEEeeeEEEecCchh----hhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCC-ceEecceEEECCcccccCCH
Confidence 4579999999999884 5 8999999999999999999999999999999999642 1168897 99999853
Q ss_pred HHHhhcCCCcccCcchh---hhHHHHHHccccccC------C-------------CCCCCCC-CchhhhhhccCCccE--
Q 027060 149 EAHARRGAPWTFNPLLL---LNCLKNLRNQGSVYA------P-------------SFDHGVG-DPVEDDILVGLQHKV-- 203 (229)
Q Consensus 149 ~~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~------~-------------~~~~~~~-~~~~~~l~~~~~~rv-- 203 (229)
..+.+.|+...||.+.- .++.+.|........ + .++.... .-+..-++.|++.|.
T Consensus 76 ~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~Ei 155 (251)
T COG0396 76 DERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEI 155 (251)
T ss_pred hHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHH
Confidence 45778888777777643 333443332211100 0 0111111 111223455555554
Q ss_pred ---EEecCCeeeecccC
Q 027060 204 ---VIVDGNYLFLDGGV 217 (229)
Q Consensus 204 ---Li~d~~~LlLDEP~ 217 (229)
++++|.+.+||||+
T Consensus 156 lQ~~~lePkl~ILDE~D 172 (251)
T COG0396 156 LQLLLLEPKLAILDEPD 172 (251)
T ss_pred HHHHhcCCCEEEecCCC
Confidence 88999999999994
No 301
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.79 E-value=2.7e-19 Score=169.03 Aligned_cols=94 Identities=19% Similarity=0.214 Sum_probs=73.6
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA 152 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~ 152 (229)
.|+++|++++|++... .+|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|. .++|.++.. ...
T Consensus 316 ~i~~~~v~~~y~~~~~--~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~i~~~~~~~~ 390 (544)
T TIGR01842 316 HLSVENVTIVPPGGKK--PTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWP---PTSGSVRLDGADLKQWDRETF 390 (544)
T ss_pred eEEEEEEEEEcCCCCc--cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEehhhCCHHHH
Confidence 5999999999964311 27999999999999999999999999999999999999 99997 888876532 122
Q ss_pred hcCCCcccCcchh--hhHHHHHHcc
Q 027060 153 RRGAPWTFNPLLL--LNCLKNLRNQ 175 (229)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~ 175 (229)
+..+.+.+|.+.+ .|+.||+.++
T Consensus 391 ~~~i~~v~q~~~lf~~ti~~Ni~~~ 415 (544)
T TIGR01842 391 GKHIGYLPQDVELFPGTVAENIARF 415 (544)
T ss_pred hhheEEecCCcccccccHHHHHhcc
Confidence 3344444444432 5899999754
No 302
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.79 E-value=1.3e-19 Score=189.53 Aligned_cols=148 Identities=14% Similarity=0.159 Sum_probs=101.5
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH--HH
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE--AH 151 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~--~~ 151 (229)
...|+++||+|.|++.. ..+++|+||+|.+||+++|+|+||||||||+++|+|+++ |++|. .++|.++.. ..
T Consensus 926 ~~~L~I~nLsK~y~~~~--k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~---PtsG~I~i~G~dI~~~~~~ 1000 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEPSG--RPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP---PTSGTVLVGGKDIETNLDA 1000 (2272)
T ss_pred CceEEEEeEEEEecCCC--ceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC---CCceEEEECCEECcchHHH
Confidence 35799999999996311 128999999999999999999999999999999999999 99997 888976532 11
Q ss_pred hhcCCCcccCc---chhhhHHHHHHccccccCC---------------------------CCCCCCCCchhhhhhccCCc
Q 027060 152 ARRGAPWTFNP---LLLLNCLKNLRNQGSVYAP---------------------------SFDHGVGDPVEDDILVGLQH 201 (229)
Q Consensus 152 ~~~~~~~~~~~---~~~~tv~e~l~~~~~~~~~---------------------------~~~~~~~~~~~~~l~~~~~~ 201 (229)
.+..+++.+|. ...+|+.|++.++...+.. .++.|+++++..+.++..++
T Consensus 1001 ~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~P 1080 (2272)
T TIGR01257 1001 VRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDA 1080 (2272)
T ss_pred HhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 23334444443 3348999999875433211 11223344444444444555
Q ss_pred cEEEecCCeeeecccCHHHHHHHHhh
Q 027060 202 KVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 202 rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
++|++|||+..||...++.+.+++..
T Consensus 1081 kVLLLDEPTSGLDp~sr~~l~~lL~~ 1106 (2272)
T TIGR01257 1081 KVVVLDEPTSGVDPYSRRSIWDLLLK 1106 (2272)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 55555555555555567787777754
No 303
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.79 E-value=2e-19 Score=167.64 Aligned_cols=141 Identities=17% Similarity=0.180 Sum_probs=96.8
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhc
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARR 154 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~ 154 (229)
++++++|+++.|++.. ...+|+++||+|.+|+++||+|+||||||||+++|+|+++ |++|. .++|.+.. .
T Consensus 20 ~mL~lknL~~~~~~~~-~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~---P~sGeI~I~G~~~~-----i 90 (549)
T PRK13545 20 PFDKLKDLFFRSKDGE-YHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM---PNKGTVDIKGSAAL-----I 90 (549)
T ss_pred ceeEEEEEEEecCCCc-cceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCceEEEECCEeee-----E
Confidence 4688999999987642 1237999999999999999999999999999999999999 99997 77775411 0
Q ss_pred CCCcccCcchhhhHHHHHHccccc---------------------------cCCCCCCCCCCchhhhhhccCCccEEEec
Q 027060 155 GAPWTFNPLLLLNCLKNLRNQGSV---------------------------YAPSFDHGVGDPVEDDILVGLQHKVVIVD 207 (229)
Q Consensus 155 ~~~~~~~~~~~~tv~e~l~~~~~~---------------------------~~~~~~~~~~~~~~~~l~~~~~~rvLi~d 207 (229)
++ .+.....+|+.+|+.+.... ....++.++.+++..++++...+++|++|
T Consensus 91 ~~--~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLD 168 (549)
T PRK13545 91 AI--SSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVID 168 (549)
T ss_pred Ee--ccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 11 11111224666665432110 01123345556666666666677777777
Q ss_pred CCeeeecccCHHHHHHHHhh
Q 027060 208 GNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 208 ~~~LlLDEP~~~~l~~~l~~ 227 (229)
+|+..||...+..+.+++..
T Consensus 169 EPTsgLD~~sr~~LlelL~e 188 (549)
T PRK13545 169 EALSVGDQTFTKKCLDKMNE 188 (549)
T ss_pred CCcccCCHHHHHHHHHHHHH
Confidence 77777777777777777653
No 304
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.78 E-value=2.6e-19 Score=170.42 Aligned_cols=93 Identities=18% Similarity=0.227 Sum_probs=71.9
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA 152 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~ 152 (229)
-|+++||++.|.+.. .+|+|+||+|++|++++|+|+||||||||+++|+|+++ ++|. .++|.++.+ ...
T Consensus 349 ~i~~~~vsf~~~~~~---~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~p----~~G~I~i~g~~i~~~~~~~l 421 (588)
T PRK11174 349 TIEAEDLEILSPDGK---TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLP----YQGSLKINGIELRELDPESW 421 (588)
T ss_pred eEEEEeeEEeccCCC---eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC----CCcEEEECCEecccCCHHHH
Confidence 499999997664321 27999999999999999999999999999999999874 6886 889876432 222
Q ss_pred hcCCCcccCcchh--hhHHHHHHccc
Q 027060 153 RRGAPWTFNPLLL--LNCLKNLRNQG 176 (229)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~ 176 (229)
+..+.+.+|.+.+ .|++||+.++.
T Consensus 422 r~~i~~v~Q~~~LF~~TI~eNI~~g~ 447 (588)
T PRK11174 422 RKHLSWVGQNPQLPHGTLRDNVLLGN 447 (588)
T ss_pred HhheEEecCCCcCCCcCHHHHhhcCC
Confidence 3345555555543 79999999873
No 305
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.78 E-value=6e-19 Score=154.09 Aligned_cols=152 Identities=19% Similarity=0.268 Sum_probs=105.8
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcc--cCCCCce-EecCCCHH-----
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQDPK----- 148 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~--~~p~~G~-~~~g~~~~----- 148 (229)
+++++||+..|......+.+++||||+|++||++||||.|||||||+.+.|+|+++. ..-.+|+ .++|+++.
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 478999999997654456799999999999999999999999999999999999961 1114566 78888631
Q ss_pred HHHhhc--CCCcccCcch-----hhhHHHHHHccccc--------------------------------cCCCCCCCCCC
Q 027060 149 EAHARR--GAPWTFNPLL-----LLNCLKNLRNQGSV--------------------------------YAPSFDHGVGD 189 (229)
Q Consensus 149 ~~~~~~--~~~~~~~~~~-----~~tv~e~l~~~~~~--------------------------------~~~~~~~~~~~ 189 (229)
..+..+ .+.+.||++. .+++-+.+...... |-..++.++.|
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ 160 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ 160 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence 111222 3677887753 23333333221111 11234566777
Q ss_pred chhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhhh
Q 027060 190 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 228 (229)
Q Consensus 190 ~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~~ 228 (229)
|+..++++..++++||.|||+..||.-.+.++.+++.+.
T Consensus 161 RV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l 199 (316)
T COG0444 161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKEL 199 (316)
T ss_pred HHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHH
Confidence 777777777777777777777777777789998888753
No 306
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.78 E-value=1.2e-19 Score=170.87 Aligned_cols=148 Identities=17% Similarity=0.259 Sum_probs=95.0
Q ss_pred CCeEEEeeeeEEcCccc-------cccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCC
Q 027060 75 IPVVEARCMDEVYDALA-------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQD 146 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~-------~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~ 146 (229)
.++|+++|+++.|+... ....+|+++||+|.+||++||+||||||||||+|+|+|++ |++|. .++|.+
T Consensus 273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~----~~~G~i~~~g~~ 348 (529)
T PRK15134 273 SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI----NSQGEIWFDGQP 348 (529)
T ss_pred CCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC----CCCcEEEECCEE
Confidence 45799999999996210 0113799999999999999999999999999999999986 46887 888865
Q ss_pred HHH-----H-HhhcCCCcccCcc-----hhhhHHHHHHccccccC---C-------------CCCC--CCCCchhhhhhc
Q 027060 147 PKE-----A-HARRGAPWTFNPL-----LLLNCLKNLRNQGSVYA---P-------------SFDH--GVGDPVEDDILV 197 (229)
Q Consensus 147 ~~~-----~-~~~~~~~~~~~~~-----~~~tv~e~l~~~~~~~~---~-------------~~~~--~~~~~~~~~l~~ 197 (229)
+.. . ..+..+.+.+|.. ..+++.+|+.++...+. + .+.. ...++....++.
T Consensus 349 i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg 428 (529)
T PRK15134 349 LHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSG 428 (529)
T ss_pred ccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCH
Confidence 421 1 1133455555543 23789999976422110 0 0000 011222334555
Q ss_pred cCCccE-----EEecCCeeeeccc-------CHHHHHHHHh
Q 027060 198 GLQHKV-----VIVDGNYLFLDGG-------VWKDVSSMFD 226 (229)
Q Consensus 198 ~~~~rv-----Li~d~~~LlLDEP-------~~~~l~~~l~ 226 (229)
|+++|+ |+.+|++++|||| .+..+.+++.
T Consensus 429 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~ 469 (529)
T PRK15134 429 GQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLK 469 (529)
T ss_pred HHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHH
Confidence 555554 5566666666666 4666666665
No 307
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.78 E-value=1.7e-19 Score=173.43 Aligned_cols=63 Identities=16% Similarity=0.180 Sum_probs=57.7
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecC
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS 144 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g 144 (229)
|.+|+++||++.|++.. +|+|+||+|.+|+++||+||||||||||||+|+|+++ |++|. .++|
T Consensus 1 m~~l~i~~ls~~~~~~~----il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~---p~~G~I~~~~ 64 (635)
T PRK11147 1 MSLISIHGAWLSFSDAP----LLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL---LDDGRIIYEQ 64 (635)
T ss_pred CcEEEEeeEEEEeCCce----eEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCeEEEeCC
Confidence 35799999999998754 8999999999999999999999999999999999999 99997 6655
No 308
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.78 E-value=8.1e-19 Score=181.14 Aligned_cols=96 Identities=19% Similarity=0.190 Sum_probs=74.4
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-Ee-cCCCHHH---HH
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SF-DSQDPKE---AH 151 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~-~g~~~~~---~~ 151 (229)
.|+++||++.|+... ...+|+|+||+|++|+++||+||||||||||+++|+|++. |++|. .+ +|.++.. ..
T Consensus 382 ~I~~~nVsf~Y~~~~-~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~i~~g~~i~~~~~~~ 457 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRK-DVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD---PTEGDIIINDSHNLKDINLKW 457 (1466)
T ss_pred cEEEEEEEEEcCCCC-CCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhcc---CCCCeEEEeCCcchhhCCHHH
Confidence 599999999998532 2238999999999999999999999999999999999999 99997 77 4565432 12
Q ss_pred hhcCCCcccCcchh--hhHHHHHHccc
Q 027060 152 ARRGAPWTFNPLLL--LNCLKNLRNQG 176 (229)
Q Consensus 152 ~~~~~~~~~~~~~~--~tv~e~l~~~~ 176 (229)
.+..+++++|.+.+ .|+++|+.++.
T Consensus 458 lr~~Ig~V~Q~~~LF~~TI~eNI~~g~ 484 (1466)
T PTZ00265 458 WRSKIGVVSQDPLLFSNSIKNNIKYSL 484 (1466)
T ss_pred HHHhccEecccccchhccHHHHHHhcC
Confidence 23334444444332 69999999863
No 309
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.78 E-value=2.5e-19 Score=168.03 Aligned_cols=59 Identities=22% Similarity=0.372 Sum_probs=56.1
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~ 140 (229)
|.+|.++++++.|+++. +|+++||+|.+|+++||||+||||||||||+|+|.+. |++|.
T Consensus 1 m~~i~~~~ls~~~g~~~----l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~---~~~G~ 59 (530)
T COG0488 1 MSMITLENLSLAYGDRP----LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE---PDSGE 59 (530)
T ss_pred CceEEEeeeEEeeCCce----eecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc---CCCCe
Confidence 45899999999998876 8999999999999999999999999999999999999 99996
No 310
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.78 E-value=3.2e-19 Score=171.81 Aligned_cols=149 Identities=16% Similarity=0.192 Sum_probs=98.4
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----- 149 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----- 149 (229)
++|+++|+++.|++......+|+++||+|.+||+++|+|+||||||||+++|+|+++ |++|. .++|+++..
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~i~~~~~~~ 79 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK---PTSGTYRVAGQDVATLDADA 79 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEcCcCCHHH
Confidence 479999999999642112237999999999999999999999999999999999999 99997 888876421
Q ss_pred H--HhhcCCCcccCcch---hhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhc
Q 027060 150 A--HARRGAPWTFNPLL---LLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILV 197 (229)
Q Consensus 150 ~--~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~ 197 (229)
. ..+..+.+.+|... .+++.||+.+...... ..++.++.+++..+.++
T Consensus 80 ~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL 159 (648)
T PRK10535 80 LAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARAL 159 (648)
T ss_pred HHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHH
Confidence 1 12334444444433 3688888875321100 01122333444444444
Q ss_pred cCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 198 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 198 ~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
..++++|++|+|+..||...++.+.+++.+
T Consensus 160 ~~~P~lLllDEP~~gLD~~s~~~l~~ll~~ 189 (648)
T PRK10535 160 MNGGQVILADEPTGALDSHSGEEVMAILHQ 189 (648)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 445555555555555555567777777654
No 311
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.78 E-value=2.4e-19 Score=153.63 Aligned_cols=137 Identities=20% Similarity=0.211 Sum_probs=87.9
Q ss_pred EEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHhhc
Q 027060 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHARR 154 (229)
Q Consensus 79 ~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~~~ 154 (229)
+++||++. . +|+++||+|.+|++++|+|+||||||||+++|+|+++ + +|. .++|+++.. ...+.
T Consensus 2 ~~~~l~~~----~----~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~---~-~G~i~~~g~~i~~~~~~~~~~ 69 (248)
T PRK03695 2 QLNDVAVS----T----RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP---G-SGSIQFAGQPLEAWSAAELAR 69 (248)
T ss_pred cccccchh----c----eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---C-CeEEEECCEecCcCCHHHHhh
Confidence 56778774 1 6899999999999999999999999999999999876 5 887 888875421 11112
Q ss_pred CCCcccCc---chhhhHHHHHHccccccCC--------------------------CCCCCCCCchhhhhhccC------
Q 027060 155 GAPWTFNP---LLLLNCLKNLRNQGSVYAP--------------------------SFDHGVGDPVEDDILVGL------ 199 (229)
Q Consensus 155 ~~~~~~~~---~~~~tv~e~l~~~~~~~~~--------------------------~~~~~~~~~~~~~l~~~~------ 199 (229)
.+.+.+|. ...+++.+|+.+....... .++.++.+++..+.++..
T Consensus 70 ~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~ 149 (248)
T PRK03695 70 HRAYLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDIN 149 (248)
T ss_pred heEEecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccC
Confidence 23333333 3347899998865321100 111233344444444432
Q ss_pred -CccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 200 -QHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 200 -~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+++++++|+|+..||...+..+.+++..
T Consensus 150 p~p~llllDEPt~~LD~~~~~~l~~~L~~ 178 (248)
T PRK03695 150 PAGQLLLLDEPMNSLDVAQQAALDRLLSE 178 (248)
T ss_pred CCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 3456666666666666567777777654
No 312
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.77 E-value=1e-18 Score=180.32 Aligned_cols=147 Identities=16% Similarity=0.139 Sum_probs=103.1
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC--------------------
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-------------------- 136 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p-------------------- 136 (229)
-|+++||+++|++.. ...+|+|+||+|++|+++||+|+||||||||+++|.|++. |
T Consensus 1165 ~I~f~nVsF~Y~~~~-~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~yd---p~~~~~~~~~~~~~~~~~~~~ 1240 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRP-NVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYD---LKNDHHIVFKNEHTNDMTNEQ 1240 (1466)
T ss_pred eEEEEEEEEECCCCC-CCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCC---Ccccccccccccccccccccc
Confidence 499999999997532 1238999999999999999999999999999999999998 7
Q ss_pred ----------------------------------CCce-EecCCCHHH---HHhhcCCCcccCcchh--hhHHHHHHccc
Q 027060 137 ----------------------------------QKAS-SFDSQDPKE---AHARRGAPWTFNPLLL--LNCLKNLRNQG 176 (229)
Q Consensus 137 ----------------------------------~~G~-~~~g~~~~~---~~~~~~~~~~~~~~~~--~tv~e~l~~~~ 176 (229)
++|. .++|.++.+ ...|..+.+++|.+.+ .|++|||.++.
T Consensus 1241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~ 1320 (1466)
T PTZ00265 1241 DYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGK 1320 (1466)
T ss_pred ccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCC
Confidence 5886 899987643 2233445556666544 79999999973
Q ss_pred ccc--------------------------------CCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHH
Q 027060 177 SVY--------------------------------APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSM 224 (229)
Q Consensus 177 ~~~--------------------------------~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~ 224 (229)
.-. ....+.+++||+..++++..+++||++||.+--||..+.+.+.+.
T Consensus 1321 ~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~ 1400 (1466)
T PTZ00265 1321 EDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKT 1400 (1466)
T ss_pred CCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHH
Confidence 210 001223444555555555555555555555555555567777776
Q ss_pred Hhh
Q 027060 225 FDE 227 (229)
Q Consensus 225 l~~ 227 (229)
++.
T Consensus 1401 L~~ 1403 (1466)
T PTZ00265 1401 IVD 1403 (1466)
T ss_pred HHH
Confidence 653
No 313
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=5.2e-19 Score=170.10 Aligned_cols=62 Identities=24% Similarity=0.308 Sum_probs=57.0
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCC
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ 145 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~ 145 (229)
+|+++||++.|+++. +|+|+||+|.+|+++||+||||||||||||+|+|+++ |++|. .+.|.
T Consensus 1 ~i~i~nls~~~g~~~----~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~---pd~G~I~~~~~ 63 (638)
T PRK10636 1 MIVFSSLQIRRGVRV----LLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS---ADGGSYTFPGN 63 (638)
T ss_pred CEEEEEEEEEeCCce----eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCC
Confidence 489999999998865 8999999999999999999999999999999999999 99997 66654
No 314
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.77 E-value=3.5e-19 Score=150.83 Aligned_cols=76 Identities=14% Similarity=0.169 Sum_probs=57.3
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC----CCce-EecCCCHHHHHh-hcCCCcccCcc-----h
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP----QKAS-SFDSQDPKEAHA-RRGAPWTFNPL-----L 164 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p----~~G~-~~~g~~~~~~~~-~~~~~~~~~~~-----~ 164 (229)
+++|+||+|++|++++|+||||||||||+++|+|+++ | ++|. .++|+++..... +..+.+.+|.+ .
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLP---PGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CccCccccEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 3689999999999999999999999999999999999 8 8997 888877543211 12344444443 2
Q ss_pred hhhHHHHHHc
Q 027060 165 LLNCLKNLRN 174 (229)
Q Consensus 165 ~~tv~e~l~~ 174 (229)
.+++.+++.+
T Consensus 78 ~~t~~~~~~~ 87 (230)
T TIGR02770 78 LFTMGNHAIE 87 (230)
T ss_pred ccCHHHHHHH
Confidence 2567666643
No 315
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=7.9e-19 Score=162.93 Aligned_cols=144 Identities=17% Similarity=0.195 Sum_probs=105.7
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH---HHHhh
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK---EAHAR 153 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~---~~~~~ 153 (229)
++++|+++.|++.+ .+++|+||++++|+.++|+|+||||||||+++|+|+++ |++|+ .++|.+.. ....+
T Consensus 321 i~~~~l~~~y~~g~---~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~---~~~G~I~vng~~l~~l~~~~~~ 394 (559)
T COG4988 321 ISLENLSFRYPDGK---PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA---PTQGEIRVNGIDLRDLSPEAWR 394 (559)
T ss_pred eeecceEEecCCCC---cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC---CCCceEEECCccccccCHHHHH
Confidence 55569999998863 27899999999999999999999999999999999999 99997 89988643 33455
Q ss_pred cCCCcccCcchh--hhHHHHHHcccccc-----------------CC--------------CCCCCCCCchhhhhhccCC
Q 027060 154 RGAPWTFNPLLL--LNCLKNLRNQGSVY-----------------AP--------------SFDHGVGDPVEDDILVGLQ 200 (229)
Q Consensus 154 ~~~~~~~~~~~~--~tv~e~l~~~~~~~-----------------~~--------------~~~~~~~~~~~~~l~~~~~ 200 (229)
+.+.++.|.+.. -|++||+.++..-. .+ ..+.++.+|+..++++..+
T Consensus 395 k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~ 474 (559)
T COG4988 395 KQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSP 474 (559)
T ss_pred hHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCC
Confidence 666677666654 68999998764411 00 0123444555555666666
Q ss_pred ccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 201 HKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 201 ~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+.++++||++.-||-.+.+.+.+.+.+
T Consensus 475 ~~l~llDEpTA~LD~etE~~i~~~l~~ 501 (559)
T COG4988 475 ASLLLLDEPTAHLDAETEQIILQALQE 501 (559)
T ss_pred CCEEEecCCccCCCHhHHHHHHHHHHH
Confidence 666666666666666677777666543
No 316
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.77 E-value=2.9e-19 Score=141.06 Aligned_cols=135 Identities=18% Similarity=0.175 Sum_probs=96.6
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA 152 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~ 152 (229)
++.++||+.+.++.. .|.++||+|.+||++-|+||+|||||||+..+.|.+...+.-+|+ .++++++.. ..+
T Consensus 2 ~l~l~nvsl~l~g~c----LLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qR 77 (213)
T COG4136 2 MLCLKNVSLRLPGSC----LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQR 77 (213)
T ss_pred ceeeeeeeecCCCce----EEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhh
Confidence 477899999888876 678999999999999999999999999999999999833344687 677776543 233
Q ss_pred hcCCCcccCc---chhhhHHHHHHccccccCCC--CC------------CCCCCchhhhhhccCCccE-----EEecCCe
Q 027060 153 RRGAPWTFNP---LLLLNCLKNLRNQGSVYAPS--FD------------HGVGDPVEDDILVGLQHKV-----VIVDGNY 210 (229)
Q Consensus 153 ~~~~~~~~~~---~~~~tv~e~l~~~~~~~~~~--~~------------~~~~~~~~~~l~~~~~~rv-----Li~d~~~ 210 (229)
.+|+ .||+ ++.++|.+|+.|......+. .. .+...+-+..++.|+++|| |+-+|.+
T Consensus 78 q~Gi--LFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~ 155 (213)
T COG4136 78 QIGI--LFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKA 155 (213)
T ss_pred heee--eecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcce
Confidence 4444 4444 34489999998864322110 00 1223344455666666665 7888999
Q ss_pred eeecccC
Q 027060 211 LFLDGGV 217 (229)
Q Consensus 211 LlLDEP~ 217 (229)
++||||.
T Consensus 156 lLLDEPF 162 (213)
T COG4136 156 LLLDEPF 162 (213)
T ss_pred eeeCCch
Confidence 9999984
No 317
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.77 E-value=1e-18 Score=152.75 Aligned_cols=62 Identities=11% Similarity=0.229 Sum_probs=55.1
Q ss_pred CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecC
Q 027060 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS 144 (229)
Q Consensus 74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g 144 (229)
..+.|+++|+++. +.. +|+++||+|.+||+++|+|+||||||||+++|+|+++ |++|. .++|
T Consensus 36 ~~~~l~i~nls~~--~~~----vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~---p~~G~I~i~g 98 (282)
T cd03291 36 DDNNLFFSNLCLV--GAP----VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE---PSEGKIKHSG 98 (282)
T ss_pred CCCeEEEEEEEEe--ccc----ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECC
Confidence 4557999999985 222 7999999999999999999999999999999999999 99997 6666
No 318
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.77 E-value=6.9e-19 Score=164.39 Aligned_cols=144 Identities=15% Similarity=0.182 Sum_probs=93.5
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---- 149 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---- 149 (229)
.++|+++|+++.|. . +|+++||+|.+||++||+|+||||||||+++|+|+++ |++|. .++|.++..
T Consensus 248 ~~~i~~~~l~~~~~--~----~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~ 318 (491)
T PRK10982 248 EVILEVRNLTSLRQ--P----SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE---KSAGTITLHGKKINNHNAN 318 (491)
T ss_pred CcEEEEeCcccccC--c----ccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc---CCccEEEECCEECCCCCHH
Confidence 35799999998752 2 7999999999999999999999999999999999999 99997 788865321
Q ss_pred HHhhcCCCcccCcc------hhhhHHHH-----HHcccc----------------------c-----c--CCCCCCCCCC
Q 027060 150 AHARRGAPWTFNPL------LLLNCLKN-----LRNQGS----------------------V-----Y--APSFDHGVGD 189 (229)
Q Consensus 150 ~~~~~~~~~~~~~~------~~~tv~e~-----l~~~~~----------------------~-----~--~~~~~~~~~~ 189 (229)
...+.++++.+|.. ..+++.+| +.+... + . ...++.++.+
T Consensus 319 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~q 398 (491)
T PRK10982 319 EAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQ 398 (491)
T ss_pred HHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHH
Confidence 12233444444331 11333322 321100 0 0 0122334455
Q ss_pred chhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 190 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 190 ~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
++..+.++..++++|++|+|+..||...+..+.+++..
T Consensus 399 rv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~ 436 (491)
T PRK10982 399 KVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAE 436 (491)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHH
Confidence 55555555556666666666666666678888777743
No 319
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.76 E-value=6.2e-19 Score=147.99 Aligned_cols=71 Identities=17% Similarity=0.115 Sum_probs=55.0
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-E-ecCCCHHHHHhhcCCCcccCcchhhhHHHHHH
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-S-FDSQDPKEAHARRGAPWTFNPLLLLNCLKNLR 173 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~-~~g~~~~~~~~~~~~~~~~~~~~~~tv~e~l~ 173 (229)
+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|. . ++|.... +.+.+..++.+++.+|+.
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---~~sG~i~~~~~~~~~-------~~~~~~l~~~ltv~enl~ 71 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA---PDEGDFIGLRGDALP-------LGANSFILPGLTGEENAR 71 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCCCEEEecCceec-------cccccccCCcCcHHHHHH
Confidence 6899999999999999999999999999999999999 99997 4 5554321 112222333468888887
Q ss_pred ccc
Q 027060 174 NQG 176 (229)
Q Consensus 174 ~~~ 176 (229)
+..
T Consensus 72 ~~~ 74 (213)
T PRK15177 72 MMA 74 (213)
T ss_pred HHH
Confidence 643
No 320
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.76 E-value=2.4e-18 Score=159.94 Aligned_cols=149 Identities=19% Similarity=0.281 Sum_probs=99.0
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCC----Cce-EecCCCHH--
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ----KAS-SFDSQDPK-- 148 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~----~G~-~~~g~~~~-- 148 (229)
++|+++||++.|......+.+++||||+|.+||++||+|.+||||||+.+.|.|+++ +. +|. .++|.++.
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~---~~~~~~~G~I~~~g~dl~~l 80 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLP---EGGRITSGEVILDGRDLLGL 80 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCC---CCCcccceEEEECCcchhcC
Confidence 489999999999866445668999999999999999999999999999999999998 55 686 88887532
Q ss_pred ---HHHhhc--CCCcccCcch-----hhhHHHHHHcccccc------------------------------CCCCCCCCC
Q 027060 149 ---EAHARR--GAPWTFNPLL-----LLNCLKNLRNQGSVY------------------------------APSFDHGVG 188 (229)
Q Consensus 149 ---~~~~~~--~~~~~~~~~~-----~~tv~e~l~~~~~~~------------------------------~~~~~~~~~ 188 (229)
..+..+ .+.+.||.+. .+++.+.+......+ -+.++.++.
T Consensus 81 ~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~r 160 (539)
T COG1123 81 SEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMR 160 (539)
T ss_pred CHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHH
Confidence 122222 2567777653 255555554322211 112333444
Q ss_pred CchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 189 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 189 ~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
||+..++++..++++||.|||+-.||.-.+.++.+++..
T Consensus 161 QRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~ 199 (539)
T COG1123 161 QRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKD 199 (539)
T ss_pred HHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHH
Confidence 444444444444444444444444444468888887754
No 321
>PRK13409 putative ATPase RIL; Provisional
Probab=99.76 E-value=8.1e-19 Score=167.24 Aligned_cols=138 Identities=15% Similarity=0.167 Sum_probs=94.3
Q ss_pred CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHh
Q 027060 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHA 152 (229)
Q Consensus 74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~ 152 (229)
..++|+++|+++.|++. .|+++||+|.+||+++|+||||||||||+|+|+|+++ |++|. .++ .
T Consensus 337 ~~~~l~~~~ls~~~~~~-----~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~---p~~G~I~~~-~------- 400 (590)
T PRK13409 337 RETLVEYPDLTKKLGDF-----SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK---PDEGEVDPE-L------- 400 (590)
T ss_pred CceEEEEcceEEEECCE-----EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEEe-e-------
Confidence 34589999999999763 4889999999999999999999999999999999999 99997 443 1
Q ss_pred hcCC-CcccCcchhhhHHHHHHcccccc----------------------CCCCCCCCCCchhhhhhccCCccEEEecCC
Q 027060 153 RRGA-PWTFNPLLLLNCLKNLRNQGSVY----------------------APSFDHGVGDPVEDDILVGLQHKVVIVDGN 209 (229)
Q Consensus 153 ~~~~-~~~~~~~~~~tv~e~l~~~~~~~----------------------~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~ 209 (229)
.+++ ++.......+|+.+++.++.... ...++.++.+++..+.++..++++|++|+|
T Consensus 401 ~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEP 480 (590)
T PRK13409 401 KISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEP 480 (590)
T ss_pred eEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 2222 22222223367888876531110 011233445555555555556666666666
Q ss_pred eeeecccCHHHHHHHHhh
Q 027060 210 YLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 210 ~LlLDEP~~~~l~~~l~~ 227 (229)
+..||...+..+.+++..
T Consensus 481 t~~LD~~~~~~l~~~l~~ 498 (590)
T PRK13409 481 SAHLDVEQRLAVAKAIRR 498 (590)
T ss_pred ccCCCHHHHHHHHHHHHH
Confidence 666666667777777653
No 322
>PLN03211 ABC transporter G-25; Provisional
Probab=99.76 E-value=6.2e-19 Score=169.94 Aligned_cols=90 Identities=16% Similarity=0.189 Sum_probs=70.2
Q ss_pred EEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCC--Cce-EecCCCHHHHHhhcC
Q 027060 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ--KAS-SFDSQDPKEAHARRG 155 (229)
Q Consensus 79 ~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~--~G~-~~~g~~~~~~~~~~~ 155 (229)
.++|+++.|+++. +|+|+|+++++||++||+||||||||||+++|+|.++ |. +|. .++|+++.... ...
T Consensus 70 ~~~~l~~~~~~~~----iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~---~~~~sG~I~inG~~~~~~~-~~~ 141 (659)
T PLN03211 70 KISDETRQIQERT----ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQ---GNNFTGTILANNRKPTKQI-LKR 141 (659)
T ss_pred ccccccccCCCCe----eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCC---CCceeEEEEECCEECchhh-ccc
Confidence 3577889998765 8999999999999999999999999999999999988 75 787 88997653322 122
Q ss_pred CCcccCc---chhhhHHHHHHccc
Q 027060 156 APWTFNP---LLLLNCLKNLRNQG 176 (229)
Q Consensus 156 ~~~~~~~---~~~~tv~e~l~~~~ 176 (229)
+.+.+|. ...+|+.|++.+..
T Consensus 142 i~yv~Q~~~l~~~lTV~E~l~~~a 165 (659)
T PLN03211 142 TGFVTQDDILYPHLTVRETLVFCS 165 (659)
T ss_pred eEEECcccccCCcCCHHHHHHHHH
Confidence 3444443 33479999998753
No 323
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.76 E-value=1.2e-18 Score=163.20 Aligned_cols=89 Identities=12% Similarity=0.180 Sum_probs=69.4
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---- 149 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---- 149 (229)
.++|+++|+++ . +|+++||+|.+||+++|+||||||||||+|+|+|+++ |++|. .++|+++..
T Consensus 255 ~~~l~~~~l~~-----~----~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~---p~~G~I~~~g~~i~~~~~~ 322 (501)
T PRK10762 255 EVRLKVDNLSG-----P----GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP---RTSGYVTLDGHEVVTRSPQ 322 (501)
T ss_pred CcEEEEeCccc-----C----CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCCCCHH
Confidence 35799999984 1 6899999999999999999999999999999999999 99997 888865321
Q ss_pred HHhhcCCCcccCcc------hhhhHHHHHHcc
Q 027060 150 AHARRGAPWTFNPL------LLLNCLKNLRNQ 175 (229)
Q Consensus 150 ~~~~~~~~~~~~~~------~~~tv~e~l~~~ 175 (229)
...+.++++.+|.+ ..+++.+|+.++
T Consensus 323 ~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~ 354 (501)
T PRK10762 323 DGLANGIVYISEDRKRDGLVLGMSVKENMSLT 354 (501)
T ss_pred HHHHCCCEEecCccccCCCcCCCcHHHHhhhh
Confidence 12234455555543 237899988753
No 324
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.76 E-value=8.3e-20 Score=141.96 Aligned_cols=117 Identities=20% Similarity=0.327 Sum_probs=75.2
Q ss_pred ccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHhhcCCCcccCc---chhhhHH
Q 027060 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHARRGAPWTFNP---LLLLNCL 169 (229)
Q Consensus 97 l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~~~~~~~~~~~---~~~~tv~ 169 (229)
|+|+||+|++|++++|+|+||||||||+++|+|+.+ |++|. .++|.++.. ...+..+.+.++. ...+++.
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~---~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~ 77 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP---PDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVR 77 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH---ESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccc---ccccccccccccccccccccccccccccccccccccccccc
Confidence 579999999999999999999999999999999999 99997 788876533 2223333333333 3335566
Q ss_pred HHHHcc------ccccCCC-CCCCCCCchhhhhhccCCccE-----EEecCCeeeecccC
Q 027060 170 KNLRNQ------GSVYAPS-FDHGVGDPVEDDILVGLQHKV-----VIVDGNYLFLDGGV 217 (229)
Q Consensus 170 e~l~~~------~~~~~~~-~~~~~~~~~~~~l~~~~~~rv-----Li~d~~~LlLDEP~ 217 (229)
+|.... ..+.... .+.... .....++.|+++|+ ++.+|++++||||+
T Consensus 78 ~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt 136 (137)
T PF00005_consen 78 ENESDERIEEVLKKLGLEDLLDRKIG-QRASSLSGGEKQRLALARALLKNPKLLLLDEPT 136 (137)
T ss_dssp HHHHHHHHHHHHHHTTHGGGTGSBGT-SCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTT
T ss_pred cccccccccccccccccccccccccc-cccchhhHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 652110 0000000 011111 11144555555444 88899999999996
No 325
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.75 E-value=2.1e-18 Score=163.14 Aligned_cols=143 Identities=15% Similarity=0.160 Sum_probs=93.5
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA 152 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~ 152 (229)
.|+++||+++|++.. .+|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|. .++|.++.. ...
T Consensus 322 ~i~~~~v~f~y~~~~---~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~~~~~~~~~~ 395 (547)
T PRK10522 322 TLELRNVTFAYQDNG---FSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ---PQSGEILLDGKPVTAEQPEDY 395 (547)
T ss_pred eEEEEEEEEEeCCCC---eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCCCCHHHH
Confidence 599999999997532 27999999999999999999999999999999999999 99997 888876432 122
Q ss_pred hcCCCcccCcchh--hhHHHH------------HH---cccccc-------CCCCCCCCCCchhhhhhccCCccEEEecC
Q 027060 153 RRGAPWTFNPLLL--LNCLKN------------LR---NQGSVY-------APSFDHGVGDPVEDDILVGLQHKVVIVDG 208 (229)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~------------l~---~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~rvLi~d~ 208 (229)
+..+.+.+|...+ .|+.+| +. +..... ...++.++.+|...++++..+++++++|+
T Consensus 396 ~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE 475 (547)
T PRK10522 396 RKLFSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDE 475 (547)
T ss_pred hhheEEEecChhHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 3334445554432 233333 11 010000 11233444555555555555566666666
Q ss_pred CeeeecccCHHHHHHHH
Q 027060 209 NYLFLDGGVWKDVSSMF 225 (229)
Q Consensus 209 ~~LlLDEP~~~~l~~~l 225 (229)
++..||..+.+.+.+.+
T Consensus 476 ~ts~LD~~~~~~i~~~l 492 (547)
T PRK10522 476 WAADQDPHFRREFYQVL 492 (547)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 66666665666665554
No 326
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.75 E-value=2.1e-18 Score=161.62 Aligned_cols=89 Identities=17% Similarity=0.156 Sum_probs=68.3
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH----HH
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK----EA 150 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~----~~ 150 (229)
.+++++|++.. . +++|+||+|.+||+++|+||||||||||+|+|+|+++ |++|. .++|+++. ..
T Consensus 256 ~~l~~~~~~~~----~----~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~---p~~G~i~~~g~~~~~~~~~~ 324 (501)
T PRK11288 256 VRLRLDGLKGP----G----LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR---RTAGQVYLDGKPIDIRSPRD 324 (501)
T ss_pred cEEEEeccccC----C----cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc---CCCceEEECCEECCCCCHHH
Confidence 47899999732 2 7899999999999999999999999999999999999 99997 78886532 11
Q ss_pred HhhcCCCcccCcc------hhhhHHHHHHcc
Q 027060 151 HARRGAPWTFNPL------LLLNCLKNLRNQ 175 (229)
Q Consensus 151 ~~~~~~~~~~~~~------~~~tv~e~l~~~ 175 (229)
..+.++.+.+|.+ ..+++.+|+.++
T Consensus 325 ~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~ 355 (501)
T PRK11288 325 AIRAGIMLCPEDRKAEGIIPVHSVADNINIS 355 (501)
T ss_pred HHhCCCEEcCcCHhhCCCcCCCCHHHHhccc
Confidence 2234455555542 237888888653
No 327
>PLN03232 ABC transporter C family member; Provisional
Probab=99.75 E-value=2e-18 Score=178.92 Aligned_cols=94 Identities=20% Similarity=0.165 Sum_probs=74.4
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA 152 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~ 152 (229)
.|+++||+++|++.. -.+|+|+||+|++||.+||+|++|||||||+++|.|+++ |++|. .++|.++.. ...
T Consensus 1234 ~I~f~nVsf~Y~~~~--~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~---p~~G~I~IdG~di~~i~~~~l 1308 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGL--PPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE---LEKGRIMIDDCDVAKFGLTDL 1308 (1495)
T ss_pred cEEEEEEEEEECCCC--CcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCceEEECCEEhhhCCHHHH
Confidence 499999999996431 127999999999999999999999999999999999999 99997 999987543 222
Q ss_pred hcCCCcccCcchh--hhHHHHHHcc
Q 027060 153 RRGAPWTFNPLLL--LNCLKNLRNQ 175 (229)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~ 175 (229)
|..+..++|.+.+ -|+++||..+
T Consensus 1309 R~~i~iVpQdp~LF~gTIr~NL~~~ 1333 (1495)
T PLN03232 1309 RRVLSIIPQSPVLFSGTVRFNIDPF 1333 (1495)
T ss_pred HhhcEEECCCCeeeCccHHHHcCCC
Confidence 3334444444433 5899999764
No 328
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.75 E-value=7.5e-18 Score=167.24 Aligned_cols=147 Identities=19% Similarity=0.218 Sum_probs=113.2
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA 152 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~ 152 (229)
-|+++||++.|+.++ .+.+|+|+||+|++|+.+|||||+||||||.+-+|..++. |++|. .+||.+++. ...
T Consensus 987 ~I~~~~V~F~YPsRP-~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd---p~~G~V~IDg~dik~lnl~~L 1062 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTRP-DVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD---PDAGKVKIDGVDIKDLNLKWL 1062 (1228)
T ss_pred EEEEeeeEeeCCCCC-CchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCCeEEECCcccccCCHHHH
Confidence 399999999999764 5669999999999999999999999999999999999999 99997 999987533 222
Q ss_pred hcCCCcccCcchh--hhHHHHHHccccc-c-------------------------------CCCCCCCCCCchhhhhhcc
Q 027060 153 RRGAPWTFNPLLL--LNCLKNLRNQGSV-Y-------------------------------APSFDHGVGDPVEDDILVG 198 (229)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~-~-------------------------------~~~~~~~~~~~~~~~l~~~ 198 (229)
|..++.+.|.+.+ -|++||+.+|..- . ....+.+++||.+.++++.
T Consensus 1063 R~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAil 1142 (1228)
T KOG0055|consen 1063 RKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAIL 1142 (1228)
T ss_pred HHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHH
Confidence 3334444444433 7999999998211 0 0123356677777777777
Q ss_pred CCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 199 ~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
.+++||++||-+--||-...+-+.+.+|.
T Consensus 1143 RnPkILLLDEATSALDseSErvVQeALd~ 1171 (1228)
T KOG0055|consen 1143 RNPKILLLDEATSALDSESERVVQEALDR 1171 (1228)
T ss_pred cCCCeeeeeccchhhhhhhHHHHHHHHHH
Confidence 77777777877777777788888887774
No 329
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.74 E-value=2.5e-18 Score=162.92 Aligned_cols=144 Identities=15% Similarity=0.031 Sum_probs=94.7
Q ss_pred eEEEeeeeEEcCcccc-ccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HH
Q 027060 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AH 151 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~-~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~ 151 (229)
.|+++||+++|++... ...+|+|+||++++|++++|+||||||||||+++|+|++. |++|. .++|.++.. ..
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~---p~~G~i~~~g~~i~~~~~~~ 413 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI---PQEGEILLDGAAVSADSRDD 413 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHH
Confidence 5999999999976311 1237999999999999999999999999999999999999 99997 888876432 12
Q ss_pred hhcCCCcccCcchh--hhHHHHHHc------------ccccc--C----------CCCCCCCCCchhhhhhccCCccEEE
Q 027060 152 ARRGAPWTFNPLLL--LNCLKNLRN------------QGSVY--A----------PSFDHGVGDPVEDDILVGLQHKVVI 205 (229)
Q Consensus 152 ~~~~~~~~~~~~~~--~tv~e~l~~------------~~~~~--~----------~~~~~~~~~~~~~~l~~~~~~rvLi 205 (229)
.+..+.+.+|...+ .++.+|... ...+. . ...+.++.+|+..++++..++++++
T Consensus 414 ~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ili 493 (555)
T TIGR01194 414 YRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILL 493 (555)
T ss_pred HHhhCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 22334444444332 344444210 00000 0 1233445555555555566666666
Q ss_pred ecCCeeeecccCHHHHHH
Q 027060 206 VDGNYLFLDGGVWKDVSS 223 (229)
Q Consensus 206 ~d~~~LlLDEP~~~~l~~ 223 (229)
+||++..||+.+++.+.+
T Consensus 494 lDE~ts~LD~~~~~~i~~ 511 (555)
T TIGR01194 494 FDEWAADQDPAFKRFFYE 511 (555)
T ss_pred EeCCccCCCHHHHHHHHH
Confidence 666666666666777755
No 330
>PLN03130 ABC transporter C family member; Provisional
Probab=99.74 E-value=3.2e-18 Score=178.13 Aligned_cols=94 Identities=18% Similarity=0.162 Sum_probs=74.3
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA 152 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~ 152 (229)
.|+++||+++|++... .+|+|+||+|++||++||+|++|||||||+++|.|+++ |++|. .++|.++.. ...
T Consensus 1237 ~I~f~nVsf~Y~~~~~--~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~---p~~G~I~IDG~dI~~i~l~~L 1311 (1622)
T PLN03130 1237 SIKFEDVVLRYRPELP--PVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE---LERGRILIDGCDISKFGLMDL 1311 (1622)
T ss_pred cEEEEEEEEEeCCCCC--ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCCceEEECCEecccCCHHHH
Confidence 5999999999975311 27999999999999999999999999999999999999 99997 999986432 222
Q ss_pred hcCCCcccCcchh--hhHHHHHHcc
Q 027060 153 RRGAPWTFNPLLL--LNCLKNLRNQ 175 (229)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~ 175 (229)
|..+..++|.+.+ -|+++||..+
T Consensus 1312 R~~IsiVpQdp~LF~GTIreNLd~~ 1336 (1622)
T PLN03130 1312 RKVLGIIPQAPVLFSGTVRFNLDPF 1336 (1622)
T ss_pred HhccEEECCCCccccccHHHHhCcC
Confidence 3334444444433 6899999764
No 331
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.74 E-value=3.7e-18 Score=160.33 Aligned_cols=87 Identities=20% Similarity=0.241 Sum_probs=65.7
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---- 149 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---- 149 (229)
.++|+++|+++ . +|+++||+|.+|+++||+||||||||||+|+|+|+++ |++|. .++|.++..
T Consensus 266 ~~~l~~~~l~~-----~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~ 333 (510)
T PRK15439 266 APVLTVEDLTG-----E----GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP---ARGGRIMLNGKEINALSTA 333 (510)
T ss_pred CceEEEeCCCC-----C----CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCcEEEECCEECCCCCHH
Confidence 45799999983 1 5889999999999999999999999999999999999 99997 788864321
Q ss_pred HHhhcCCCcccCc------chhhhHHHHHH
Q 027060 150 AHARRGAPWTFNP------LLLLNCLKNLR 173 (229)
Q Consensus 150 ~~~~~~~~~~~~~------~~~~tv~e~l~ 173 (229)
...+.++.+.+|. +..+++.+|+.
T Consensus 334 ~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~ 363 (510)
T PRK15439 334 QRLARGLVYLPEDRQSSGLYLDAPLAWNVC 363 (510)
T ss_pred HHHhCCcEECCCChhhCCccCCCcHHHHHH
Confidence 1123345444443 22257777764
No 332
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.73 E-value=3.9e-18 Score=138.68 Aligned_cols=149 Identities=18% Similarity=0.232 Sum_probs=97.4
Q ss_pred CCeEEEeeeeEEcCccc-----cccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH
Q 027060 75 IPVVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK 148 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~-----~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~ 148 (229)
+++++++|++|.|.... ..+.+++.|||++++|+.++|||.||||||||.|+|+|+++ |++|+ .++|+.+.
T Consensus 2 ~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~---PTsG~il~n~~~L~ 78 (267)
T COG4167 2 ETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE---PTSGEILINDHPLH 78 (267)
T ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccC---CCCceEEECCcccc
Confidence 56799999999986531 23458899999999999999999999999999999999999 99997 88887532
Q ss_pred H---HHhhcCCCcccCcchh-----hh-----------------------HHHHHHcccc------ccCCCCCCCCCCch
Q 027060 149 E---AHARRGAPWTFNPLLL-----LN-----------------------CLKNLRNQGS------VYAPSFDHGVGDPV 191 (229)
Q Consensus 149 ~---~~~~~~~~~~~~~~~~-----~t-----------------------v~e~l~~~~~------~~~~~~~~~~~~~~ 191 (229)
. ..+...+-+.||++.- +. +++.+..... ++......++++++
T Consensus 79 ~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRV 158 (267)
T COG4167 79 FGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRV 158 (267)
T ss_pred ccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHH
Confidence 1 1222223344444321 22 2222222111 11112234566666
Q ss_pred hhhhhccCCccEEEecCCeeeecccCHHHHHHHHh
Q 027060 192 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 226 (229)
Q Consensus 192 ~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~ 226 (229)
+.+.++-..++++|.|+.+-.||---+.++.+++-
T Consensus 159 aLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~L 193 (267)
T COG4167 159 ALARALILRPKIIIADEALASLDMSMRSQLINLML 193 (267)
T ss_pred HHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHH
Confidence 66666666666666666666666655666666543
No 333
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.73 E-value=7.6e-18 Score=162.61 Aligned_cols=86 Identities=13% Similarity=0.018 Sum_probs=65.1
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhc
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARR 154 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~ 154 (229)
..|+++||++.|++.. .+|+++||+|++||+++|+||||||||||+++|+|+++ |++|. .+++. .
T Consensus 450 ~~i~~~nv~~~~~~~~---~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~---~~~G~i~~~~~--------~ 515 (659)
T TIGR00954 450 NGIKFENIPLVTPNGD---VLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP---VYGGRLTKPAK--------G 515 (659)
T ss_pred CeEEEEeeEEECCCCC---eeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEeecCC--------C
Confidence 3699999999996421 27999999999999999999999999999999999999 99997 54431 1
Q ss_pred CCCcccCcch--hhhHHHHHHcc
Q 027060 155 GAPWTFNPLL--LLNCLKNLRNQ 175 (229)
Q Consensus 155 ~~~~~~~~~~--~~tv~e~l~~~ 175 (229)
.+.+.+|.+. ..|+.||+.++
T Consensus 516 ~i~~v~Q~~~l~~~tv~eni~~~ 538 (659)
T TIGR00954 516 KLFYVPQRPYMTLGTLRDQIIYP 538 (659)
T ss_pred cEEEECCCCCCCCcCHHHHHhcC
Confidence 2222333321 13777887764
No 334
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.73 E-value=7.6e-18 Score=136.05 Aligned_cols=146 Identities=16% Similarity=0.210 Sum_probs=101.4
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCC---C--H-
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ---D--P- 147 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~---~--~- 147 (229)
.|++++.+++|.|++.. -.++|||++.+||+.||+|.+|||||||+++|.+-+. |+.|. .+... . +
T Consensus 4 ~PLL~V~~lsk~Yg~~~----gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~---p~~G~v~Y~~r~~~~~dl~ 76 (258)
T COG4107 4 KPLLSVSGLSKLYGPGK----GCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT---PDAGTVTYRMRDGQPRDLY 76 (258)
T ss_pred CcceeehhhhhhhCCCc----CccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC---CCCCeEEEEcCCCCchhHh
Confidence 46899999999999876 7889999999999999999999999999999999999 99996 44322 1 1
Q ss_pred --HH----HHhhcCCCcccCcchh---------hhHHHHHHcc-cccc------------------------CCCCCCCC
Q 027060 148 --KE----AHARRGAPWTFNPLLL---------LNCLKNLRNQ-GSVY------------------------APSFDHGV 187 (229)
Q Consensus 148 --~~----~~~~~~~~~~~~~~~~---------~tv~e~l~~~-~~~~------------------------~~~~~~~~ 187 (229)
.+ ...+-.+++++|++.. -++-|.+... .+-| -..|+.++
T Consensus 77 ~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGM 156 (258)
T COG4107 77 TMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGM 156 (258)
T ss_pred hhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHH
Confidence 11 1123346677776632 1222333211 1100 01355667
Q ss_pred CCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 188 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 188 ~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
.++...+..+...+|++.+|+|.-+||--.+.++.+++..
T Consensus 157 qQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrg 196 (258)
T COG4107 157 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRG 196 (258)
T ss_pred HHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHH
Confidence 7777777777777777777777777777778888877653
No 335
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.73 E-value=4.5e-18 Score=146.65 Aligned_cols=54 Identities=22% Similarity=0.312 Sum_probs=48.0
Q ss_pred eeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCceE
Q 027060 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 141 (229)
Q Consensus 81 ~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~~ 141 (229)
.+|+++|++.. .+|+++++ +.+|++++|+||||||||||+++|+|+++ |++|..
T Consensus 4 ~~~~~~y~~~~---~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~---p~~G~I 57 (255)
T cd03236 4 DEPVHRYGPNS---FKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLK---PNLGKF 57 (255)
T ss_pred cCcceeecCcc---hhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcC---CCCceE
Confidence 47899997542 27899995 99999999999999999999999999999 999974
No 336
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.72 E-value=7.5e-18 Score=150.70 Aligned_cols=149 Identities=19% Similarity=0.281 Sum_probs=110.2
Q ss_pred CCCeEEEeeeeEEcCcc-------ccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCC
Q 027060 74 EIPVVEARCMDEVYDAL-------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ 145 (229)
Q Consensus 74 ~~~~i~~~~ls~~y~~~-------~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~ 145 (229)
..++++++++..+|.-+ ...+.++++|||++.+|+.+||||.+|||||||-++|.++++ +. |. .+.|+
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~---s~-G~I~F~G~ 348 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP---SQ-GEIRFDGQ 348 (534)
T ss_pred CCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcC---cC-ceEEECCc
Confidence 34589999999999532 223668999999999999999999999999999999999998 66 75 88888
Q ss_pred CHHH------HHhhcCCCcccCcch-----hhhHHHHHHccccccCCCCC------------------CCCCCchhhhhh
Q 027060 146 DPKE------AHARRGAPWTFNPLL-----LLNCLKNLRNQGSVYAPSFD------------------HGVGDPVEDDIL 196 (229)
Q Consensus 146 ~~~~------~~~~~~~~~~~~~~~-----~~tv~e~l~~~~~~~~~~~~------------------~~~~~~~~~~l~ 196 (229)
++.. ...+..+..+||+++ -++|.+-+..+..++.+..+ .....+.+.+++
T Consensus 349 ~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFS 428 (534)
T COG4172 349 DIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFS 428 (534)
T ss_pred cccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccC
Confidence 6431 122334445555553 28999999888877764432 233456666777
Q ss_pred ccCCccE-----EEecCCeeeecccC-------HHHHHHHHh
Q 027060 197 VGLQHKV-----VIVDGNYLFLDGGV-------WKDVSSMFD 226 (229)
Q Consensus 197 ~~~~~rv-----Li~d~~~LlLDEP~-------~~~l~~~l~ 226 (229)
.|+.+|| ++++|.+++||||+ +.++.+++.
T Consensus 429 GGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr 470 (534)
T COG4172 429 GGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLR 470 (534)
T ss_pred cchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHH
Confidence 7776666 88888888888885 667776664
No 337
>PTZ00243 ABC transporter; Provisional
Probab=99.72 E-value=8.6e-18 Score=174.61 Aligned_cols=93 Identities=17% Similarity=0.178 Sum_probs=74.7
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA 152 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~ 152 (229)
.|+++||+++|++.. -.+|+||||+|++||++||+|++|||||||+++|.|+++ |++|. .++|.++.. ...
T Consensus 1308 ~I~f~nVsf~Y~~~~--~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~---p~~G~I~IDG~di~~i~l~~L 1382 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGL--PLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE---VCGGEIRVNGREIGAYGLREL 1382 (1560)
T ss_pred eEEEEEEEEEeCCCC--CceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccCCHHHH
Confidence 499999999997632 137999999999999999999999999999999999999 99997 999987532 222
Q ss_pred hcCCCcccCcchh--hhHHHHHHc
Q 027060 153 RRGAPWTFNPLLL--LNCLKNLRN 174 (229)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~ 174 (229)
|..+..++|.+.+ -|+++||..
T Consensus 1383 R~~I~iVpQdp~LF~gTIreNIdp 1406 (1560)
T PTZ00243 1383 RRQFSMIPQDPVLFDGTVRQNVDP 1406 (1560)
T ss_pred HhcceEECCCCccccccHHHHhCc
Confidence 3445555555443 689999975
No 338
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.72 E-value=5.1e-18 Score=140.84 Aligned_cols=148 Identities=18% Similarity=0.160 Sum_probs=102.5
Q ss_pred eEEEeeeeEEcCcc-ccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH--Hh
Q 027060 77 VVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA--HA 152 (229)
Q Consensus 77 ~i~~~~ls~~y~~~-~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~--~~ 152 (229)
|+++.|+.+.|... ...-.+|+++|++|.+|+++.|+|.||||||||+++|+|-+. |++|. .++|.++... ..
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~---~t~G~I~Idg~dVtk~~~~~ 77 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK---PTSGQILIDGVDVTKKSVAK 77 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc---cCCceEEECceecccCCHHH
Confidence 36677888777543 223448999999999999999999999999999999999999 99997 9999886432 22
Q ss_pred hcC-CCcccCcchh-----hhHHHHHHcccccc-----C------------------------------CCCCCCCCCch
Q 027060 153 RRG-APWTFNPLLL-----LNCLKNLRNQGSVY-----A------------------------------PSFDHGVGDPV 191 (229)
Q Consensus 153 ~~~-~~~~~~~~~~-----~tv~e~l~~~~~~~-----~------------------------------~~~~~~~~~~~ 191 (229)
+.+ +..+||++.. +|+.||+.+...-. . ..++.++.|.+
T Consensus 78 RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQal 157 (263)
T COG1101 78 RANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQAL 157 (263)
T ss_pred HhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHH
Confidence 222 4667777643 99999998743210 0 01122333333
Q ss_pred hhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 192 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 192 ~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
...++....+++|++|+-..-||+-....++++-++
T Consensus 158 sL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~k 193 (263)
T COG1101 158 SLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAK 193 (263)
T ss_pred HHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHH
Confidence 334445566777777777777777666666665444
No 339
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.72 E-value=1.3e-17 Score=171.74 Aligned_cols=100 Identities=15% Similarity=0.150 Sum_probs=73.8
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhc
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARR 154 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~ 154 (229)
.+++++||++.|+.+.....+|+|||++|++|++++|+|||||||||||++|+|+++...+++|. .++|+++... .+.
T Consensus 758 ~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~-~~~ 836 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSS-FQR 836 (1394)
T ss_pred ceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChh-hhc
Confidence 35899999999963222234899999999999999999999999999999999987511246787 8899875322 222
Q ss_pred CCCcccCc---chhhhHHHHHHccc
Q 027060 155 GAPWTFNP---LLLLNCLKNLRNQG 176 (229)
Q Consensus 155 ~~~~~~~~---~~~~tv~e~l~~~~ 176 (229)
.+++.+|. ...+|++|++.+..
T Consensus 837 ~i~yv~Q~~~~~~~~Tv~E~L~~~a 861 (1394)
T TIGR00956 837 SIGYVQQQDLHLPTSTVRESLRFSA 861 (1394)
T ss_pred ceeeecccccCCCCCCHHHHHHHHH
Confidence 33444443 33489999998754
No 340
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.72 E-value=7.2e-18 Score=144.61 Aligned_cols=122 Identities=15% Similarity=0.208 Sum_probs=75.0
Q ss_pred cccceeeeec-----CCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhcCC-CcccCcchhhhH
Q 027060 96 PTSALASNVN-----VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARRGA-PWTFNPLLLLNC 168 (229)
Q Consensus 96 ~l~~isl~i~-----~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~~~-~~~~~~~~~~tv 168 (229)
.+++++|++. +||+++|+||||||||||+++|+|+++ |++|. .++|.. +++ ++........|+
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~---p~~G~i~~~g~~-------i~~~~q~~~~~~~~tv 78 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK---PDEGDIEIELDT-------VSYKPQYIKADYEGTV 78 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCCeEEECCce-------EEEecccccCCCCCCH
Confidence 4556666664 799999999999999999999999999 99997 777742 221 221111222566
Q ss_pred HHHHHcccccc-----------------------CCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHH
Q 027060 169 LKNLRNQGSVY-----------------------APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 225 (229)
Q Consensus 169 ~e~l~~~~~~~-----------------------~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l 225 (229)
.+++.+..... ...++.++.+++..+.++...++++++|+|+..||...+..+.+++
T Consensus 79 ~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l 158 (246)
T cd03237 79 RDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVI 158 (246)
T ss_pred HHHHHHHhhhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 66664321100 0122334445555555555555556666666666655677777666
Q ss_pred hh
Q 027060 226 DE 227 (229)
Q Consensus 226 ~~ 227 (229)
..
T Consensus 159 ~~ 160 (246)
T cd03237 159 RR 160 (246)
T ss_pred HH
Confidence 54
No 341
>PLN03073 ABC transporter F family; Provisional
Probab=99.72 E-value=9.8e-18 Score=162.85 Aligned_cols=64 Identities=19% Similarity=0.295 Sum_probs=56.3
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecC
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS 144 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g 144 (229)
.++|+++||++.|++.. .+|+++||+|.+|++++|+||||||||||+|+|+|+++ |++|. .+.+
T Consensus 506 ~~~L~~~~ls~~y~~~~---~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~---p~~G~I~~~~ 570 (718)
T PLN03073 506 PPIISFSDASFGYPGGP---LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ---PSSGTVFRSA 570 (718)
T ss_pred CceEEEEeeEEEeCCCC---eeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCceEEECC
Confidence 46899999999996421 27999999999999999999999999999999999999 99997 5443
No 342
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.72 E-value=1.3e-17 Score=173.14 Aligned_cols=92 Identities=22% Similarity=0.170 Sum_probs=73.1
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA 152 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~ 152 (229)
.|+++||+++|++... .+|+|+||+|++||++||+|++|||||||+++|.|+++ |++|. .++|.++.. ...
T Consensus 1284 ~I~f~nVsf~Y~~~~~--~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~---~~~G~I~IdG~dI~~i~~~~L 1358 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDLD--LVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE---SAEGEIIIDGLNIAKIGLHDL 1358 (1522)
T ss_pred cEEEEEEEEEeCCCCc--ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc---CCCCeEEECCEEccccCHHHH
Confidence 5999999999975321 38999999999999999999999999999999999999 99997 999987532 122
Q ss_pred hcCCCcccCcchh--hhHHHHHH
Q 027060 153 RRGAPWTFNPLLL--LNCLKNLR 173 (229)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~ 173 (229)
|..+...+|++.+ -|+++||.
T Consensus 1359 R~~i~iVpQdp~LF~gTIr~NLd 1381 (1522)
T TIGR00957 1359 RFKITIIPQDPVLFSGSLRMNLD 1381 (1522)
T ss_pred HhcCeEECCCCcccCccHHHHcC
Confidence 3334444444433 58999987
No 343
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.72 E-value=4.4e-17 Score=148.65 Aligned_cols=145 Identities=20% Similarity=0.196 Sum_probs=105.7
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH---Hh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA---HA 152 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~---~~ 152 (229)
-|+++||++.|+... .+|+||||++.+|+.++|+||+|+||||++|+|..+.. ..+|. .++|+|+... ..
T Consensus 537 ~i~fsnvtF~Y~p~k---~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd---v~sGsI~iDgqdIrnvt~~SL 610 (790)
T KOG0056|consen 537 KIEFSNVTFAYDPGK---PVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD---VNSGSITIDGQDIRNVTQSSL 610 (790)
T ss_pred eEEEEEeEEecCCCC---ceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh---ccCceEEEcCchHHHHHHHHH
Confidence 499999999998753 37899999999999999999999999999999999999 99996 9999986542 22
Q ss_pred hcCCCcccCcc--hhhhHHHHHHcccccc--------------------------------CCCCCCCCCCchhhhhhcc
Q 027060 153 RRGAPWTFNPL--LLLNCLKNLRNQGSVY--------------------------------APSFDHGVGDPVEDDILVG 198 (229)
Q Consensus 153 ~~~~~~~~~~~--~~~tv~e~l~~~~~~~--------------------------------~~~~~~~~~~~~~~~l~~~ 198 (229)
|..++.++|+. ...|++.|+.++..-. .-..+.+.++|++.+..+.
T Consensus 611 Rs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiL 690 (790)
T KOG0056|consen 611 RSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTIL 690 (790)
T ss_pred HHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHh
Confidence 33333344333 2367778887753211 0112345566666666666
Q ss_pred CCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 199 ~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
..+.++++|+....||.++.+.+...+..
T Consensus 691 K~P~iIlLDEATSALDT~tER~IQaaL~r 719 (790)
T KOG0056|consen 691 KAPSIILLDEATSALDTNTERAIQAALAR 719 (790)
T ss_pred cCCcEEEEcchhhhcCCccHHHHHHHHHH
Confidence 66666777777777777888888776543
No 344
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.70 E-value=3.9e-17 Score=162.10 Aligned_cols=147 Identities=16% Similarity=0.146 Sum_probs=114.1
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---- 149 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---- 149 (229)
...+.++++++.|+.... +++++++.|++||+.|++|+|||||||++++|+|..+ |++|. .+.|.++..
T Consensus 562 ~~~~~~~~L~k~y~~~~~---Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~---~t~G~a~i~g~~i~~~~~~ 635 (885)
T KOG0059|consen 562 SSALVLNNLSKVYGGKDG---AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK---PTSGEALIKGHDITVSTDF 635 (885)
T ss_pred cceEEEcceeeeecchhh---hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCcc---CCcceEEEecCccccccch
Confidence 357999999999998643 7899999999999999999999999999999999999 99997 888886532
Q ss_pred --HHhhcCC-CcccCcchhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccC
Q 027060 150 --AHARRGA-PWTFNPLLLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGL 199 (229)
Q Consensus 150 --~~~~~~~-~~~~~~~~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~ 199 (229)
.+...|+ |+.......+|.+|.+.+..++++ ..|+.+++.+..-++++..
T Consensus 636 ~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig 715 (885)
T KOG0059|consen 636 QQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIG 715 (885)
T ss_pred hhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhc
Confidence 3444554 444444455999999988765543 2345566677777777777
Q ss_pred CccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 200 ~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
.+.++++|+|.-++|.-.++.+.+++..
T Consensus 716 ~p~vi~LDEPstGmDP~arr~lW~ii~~ 743 (885)
T KOG0059|consen 716 DPSVILLDEPSTGLDPKARRHLWDIIAR 743 (885)
T ss_pred CCCEEEecCCCCCCCHHHHHHHHHHHHH
Confidence 7777777777777777778888887764
No 345
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.70 E-value=2.2e-17 Score=139.31 Aligned_cols=121 Identities=19% Similarity=0.250 Sum_probs=76.8
Q ss_pred eeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhcCCCcccCcch-----hhhHHHHHHcc
Q 027060 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARRGAPWTFNPLL-----LLNCLKNLRNQ 175 (229)
Q Consensus 102 l~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~~~~~~~~~~~-----~~tv~e~l~~~ 175 (229)
|+|++||+++|+|+||||||||+++|+|+++ |++|. .++|+++.... ..+.+.+|.+. ..++.+|+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~--~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP---PAKGTVKVAGASPGKGW--RHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCccchHhh--CcEEEecccccccCCCCccHHHHHHhc
Confidence 5788999999999999999999999999999 99997 88888764322 23444444321 25788887654
Q ss_pred cccc-----C--------------------------CCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHH
Q 027060 176 GSVY-----A--------------------------PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSM 224 (229)
Q Consensus 176 ~~~~-----~--------------------------~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~ 224 (229)
.... . ..++.++.+++....++..+++++++|+|+..||...+..+.++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~ 155 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTEL 155 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 2100 0 01112233333444444445555555555555555567777777
Q ss_pred Hhh
Q 027060 225 FDE 227 (229)
Q Consensus 225 l~~ 227 (229)
+..
T Consensus 156 l~~ 158 (223)
T TIGR03771 156 FIE 158 (223)
T ss_pred HHH
Confidence 653
No 346
>PRK13409 putative ATPase RIL; Provisional
Probab=99.69 E-value=2e-17 Score=157.80 Aligned_cols=139 Identities=14% Similarity=0.091 Sum_probs=87.7
Q ss_pred eeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-E-----------ecCCCHHH
Q 027060 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-S-----------FDSQDPKE 149 (229)
Q Consensus 82 ~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~-----------~~g~~~~~ 149 (229)
+++++|+... .+|++++ .+++|+++||+||||||||||+|+|+|+++ |+.|. . ++|.++..
T Consensus 78 ~~~~~yg~~~---~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~---p~~G~i~~~~~~~~~~~~~~G~~l~~ 150 (590)
T PRK13409 78 EPVHRYGVNG---FKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI---PNLGDYEEEPSWDEVLKRFRGTELQN 150 (590)
T ss_pred CceEEecCCc---eeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCccccCCCcHHHHHHHhCChHHHH
Confidence 3789998631 2799999 899999999999999999999999999999 99997 4 77877543
Q ss_pred HHh-----hcCCCcc----cCcchh--hhHHHHHHcccc------------c------cCCCCCCCCCCchhhhhhccCC
Q 027060 150 AHA-----RRGAPWT----FNPLLL--LNCLKNLRNQGS------------V------YAPSFDHGVGDPVEDDILVGLQ 200 (229)
Q Consensus 150 ~~~-----~~~~~~~----~~~~~~--~tv~e~l~~~~~------------~------~~~~~~~~~~~~~~~~l~~~~~ 200 (229)
... ...+... ++.+.+ .++.+++..... + ....++.++.+++..+.++...
T Consensus 151 ~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~ 230 (590)
T PRK13409 151 YFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRD 230 (590)
T ss_pred HHHHHhccCcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 211 1112211 222211 367776643210 0 0112233444555555555555
Q ss_pred ccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 201 HKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 201 ~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
++++++|||+..||...+..+.+++..
T Consensus 231 p~lllLDEPts~LD~~~~~~l~~~i~~ 257 (590)
T PRK13409 231 ADFYFFDEPTSYLDIRQRLNVARLIRE 257 (590)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 555666666666665567777776654
No 347
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.69 E-value=1.5e-16 Score=128.08 Aligned_cols=150 Identities=19% Similarity=0.250 Sum_probs=92.9
Q ss_pred CeEEEeeeeEEcCcc---ccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-Eec--CC--C-
Q 027060 76 PVVEARCMDEVYDAL---AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFD--SQ--D- 146 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~---~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~--g~--~- 146 (229)
..|.++|++|+|--. .-.+.+++++||+++.||++++-||+|+|||||||+|.+.+. |++|. .+. |. +
T Consensus 3 ~~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~---~d~G~I~v~H~g~~vdl 79 (235)
T COG4778 3 TPLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL---PDEGQILVRHEGEWVDL 79 (235)
T ss_pred ceeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC---CCCceEEEEeCcchhhh
Confidence 468999999998421 124568999999999999999999999999999999999999 99996 433 22 1
Q ss_pred ----HHH--HHhhcCCCcccCcchh---hhHHHHHHcc-------------------------cccc---CCCCCCCCCC
Q 027060 147 ----PKE--AHARRGAPWTFNPLLL---LNCLKNLRNQ-------------------------GSVY---APSFDHGVGD 189 (229)
Q Consensus 147 ----~~~--~~~~~~~~~~~~~~~~---~tv~e~l~~~-------------------------~~~~---~~~~~~~~~~ 189 (229)
+.+ ..++..++++.|+... .+.+|-++.+ .+++ -..|+.+..+
T Consensus 80 ~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQ 159 (235)
T COG4778 80 VTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQ 159 (235)
T ss_pred hccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchhe
Confidence 111 1122233443333221 2222222221 1111 1134455555
Q ss_pred chhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhhh
Q 027060 190 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 228 (229)
Q Consensus 190 ~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~~ 228 (229)
++..+..+...-.||++|+|+.-||.-+++-+.++++++
T Consensus 160 RVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~ 198 (235)
T COG4778 160 RVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREA 198 (235)
T ss_pred ehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHH
Confidence 555555554455555555555555555788888888764
No 348
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.68 E-value=1.7e-17 Score=142.44 Aligned_cols=135 Identities=15% Similarity=0.174 Sum_probs=103.1
Q ss_pred eeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCC---------HHHHH
Q 027060 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQD---------PKEAH 151 (229)
Q Consensus 82 ~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~---------~~~~~ 151 (229)
|+.+.+|+.. + +++|.++...+++|-|++|||||||+|+|+|+++ |+.|. .++|+. +....
T Consensus 5 ~~~~~lG~~~----l--~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r---PdeG~I~lngr~L~Ds~k~i~lp~~~ 75 (352)
T COG4148 5 NFRQRLGNFA----L--DANFTLPARGITALFGPSGSGKTSLINMIAGLTR---PDEGRIELNGRVLVDAEKGIFLPPEK 75 (352)
T ss_pred ehhhhcCceE----E--EEeccCCCCceEEEecCCCCChhhHHHHHhccCC---ccccEEEECCEEeecccCCcccChhh
Confidence 4566777653 4 8899999878999999999999999999999999 99997 888863 12233
Q ss_pred hhcCCCcccCc---chhhhHHHHHHccccccC---------------------CCCCCCCCCchhhhhhccCCccEEEec
Q 027060 152 ARRGAPWTFNP---LLLLNCLKNLRNQGSVYA---------------------PSFDHGVGDPVEDDILVGLQHKVVIVD 207 (229)
Q Consensus 152 ~~~~~~~~~~~---~~~~tv~e~l~~~~~~~~---------------------~~~~~~~~~~~~~~l~~~~~~rvLi~d 207 (229)
+++ +++||+ ++.+||..|+.|+..... ...+.+.+|+++...++...+++|++|
T Consensus 76 Rri--GYVFQDARLFpH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmD 153 (352)
T COG4148 76 RRI--GYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMD 153 (352)
T ss_pred hee--eeEeeccccccceEEecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeec
Confidence 444 445554 455999999999865431 123456778888878877888888888
Q ss_pred CCeeeecccCHHHHHHHHhh
Q 027060 208 GNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 208 ~~~LlLDEP~~~~l~~~l~~ 227 (229)
+|+.-||+|..+++.-+++.
T Consensus 154 EPLaSLD~~RK~EilpylER 173 (352)
T COG4148 154 EPLASLDLPRKREILPYLER 173 (352)
T ss_pred CchhhcccchhhHHHHHHHH
Confidence 88888888888888877653
No 349
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.68 E-value=6.7e-17 Score=155.05 Aligned_cols=129 Identities=16% Similarity=0.206 Sum_probs=85.5
Q ss_pred ccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCC---Cce-EecCCCHHHHHhhcCCCcccCc---chhhh
Q 027060 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KAS-SFDSQDPKEAHARRGAPWTFNP---LLLLN 167 (229)
Q Consensus 95 ~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~---~G~-~~~g~~~~~~~~~~~~~~~~~~---~~~~t 167 (229)
.+|+|+|+++++||+++|+|||||||||||++|+|..+ +. +|+ .++|.++.....+..+.+.+|. .+.+|
T Consensus 39 ~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~---~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 39 HLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSP---KGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred ccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 38999999999999999999999999999999999887 64 686 8888765322222233333333 34479
Q ss_pred HHHHHHccccccCCC-CC------------------CCCCCchh-----hhhhccCCccE-----EEecCCeeeeccc--
Q 027060 168 CLKNLRNQGSVYAPS-FD------------------HGVGDPVE-----DDILVGLQHKV-----VIVDGNYLFLDGG-- 216 (229)
Q Consensus 168 v~e~l~~~~~~~~~~-~~------------------~~~~~~~~-----~~l~~~~~~rv-----Li~d~~~LlLDEP-- 216 (229)
|.||+.++.....+. .. ......+. ..++.|+++|+ |+.+|++++||||
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 999998765433211 00 00111111 23666666666 6677777777777
Q ss_pred -----CHHHHHHHHh
Q 027060 217 -----VWKDVSSMFD 226 (229)
Q Consensus 217 -----~~~~l~~~l~ 226 (229)
....+.+.+.
T Consensus 196 gLD~~~~~~l~~~L~ 210 (617)
T TIGR00955 196 GLDSFMAYSVVQVLK 210 (617)
T ss_pred chhHHHHHHHHHHHH
Confidence 3555555554
No 350
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.68 E-value=3.8e-17 Score=133.53 Aligned_cols=120 Identities=18% Similarity=0.092 Sum_probs=81.4
Q ss_pred ccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhcCCCcccCcchhhhHHHHHH
Q 027060 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARRGAPWTFNPLLLLNCLKNLR 173 (229)
Q Consensus 95 ~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~~~~~~~~~~~~~tv~e~l~ 173 (229)
.+|+|+||+|.+|++++|+||||||||||||+|. +++|. .+.+..... .+..+.+.++ ...++.+.
T Consensus 9 ~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il-------~~~G~v~~~~~~~~~--~~~~~~~~~q----~~~l~~~~ 75 (176)
T cd03238 9 HNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL-------YASGKARLISFLPKF--SRNKLIFIDQ----LQFLIDVG 75 (176)
T ss_pred eeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh-------hcCCcEEECCccccc--ccccEEEEhH----HHHHHHcC
Confidence 4799999999999999999999999999999884 24675 666552211 1112223222 23444443
Q ss_pred cccc-cc--CCCCCCCCCCchhhhhhccCC--ccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 174 NQGS-VY--APSFDHGVGDPVEDDILVGLQ--HKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 174 ~~~~-~~--~~~~~~~~~~~~~~~l~~~~~--~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+... .. ...++.++.+++..+.++..+ ++++++|+|+..||...++.+.+++..
T Consensus 76 L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~ 134 (176)
T cd03238 76 LGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKG 134 (176)
T ss_pred CCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 3221 11 223455667777777777777 888888888888888888888877754
No 351
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.67 E-value=1.2e-16 Score=165.83 Aligned_cols=145 Identities=17% Similarity=0.159 Sum_probs=96.3
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA 152 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~ 152 (229)
.|+++||+++|++.. -.+|+|+||+|++||.+||+|++|||||||+++|.|++. .+|. .++|.++.. ...
T Consensus 1217 ~I~f~nVs~~Y~~~~--~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~----~~G~I~IdG~di~~i~~~~l 1290 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAG--RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS----TEGEIQIDGVSWNSVTLQTW 1290 (1490)
T ss_pred eEEEEEEEEEeCCCC--cceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC----CCcEEEECCEEcccCCHHHH
Confidence 599999999997532 138999999999999999999999999999999999975 5786 999987532 222
Q ss_pred hcCCCcccCcchh--hhHHHHHHcccccc-------------------------------CCCCCCCCCCchhhhhhccC
Q 027060 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVY-------------------------------APSFDHGVGDPVEDDILVGL 199 (229)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~l~~~~ 199 (229)
|..+.+.+|.+.+ -|+++||....... ...++.|+.|++..++++..
T Consensus 1291 R~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr 1370 (1490)
T TIGR01271 1291 RKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILS 1370 (1490)
T ss_pred HhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhC
Confidence 3344444554443 58999996432100 00123344444444445555
Q ss_pred CccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 200 ~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+++||++||++.-+|..+.+.+.+.+..
T Consensus 1371 ~~~ILlLDEaTS~lD~~Te~~I~~~L~~ 1398 (1490)
T TIGR01271 1371 KAKILLLDEPSAHLDPVTLQIIRKTLKQ 1398 (1490)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 5555555555555555556666666553
No 352
>PLN03073 ABC transporter F family; Provisional
Probab=99.66 E-value=1.4e-16 Score=154.77 Aligned_cols=62 Identities=15% Similarity=0.142 Sum_probs=53.0
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~ 140 (229)
..+|+++|+++.|++.. +|+|+||+|.+|+++||||+||||||||||+|+|......|.+|.
T Consensus 175 ~~~I~i~nls~~y~~~~----ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~ 236 (718)
T PLN03073 175 IKDIHMENFSISVGGRD----LIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQ 236 (718)
T ss_pred ceeEEEceEEEEeCCCE----EEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCE
Confidence 34799999999998765 899999999999999999999999999999999964101267775
No 353
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.65 E-value=2.3e-16 Score=164.02 Aligned_cols=134 Identities=11% Similarity=0.105 Sum_probs=91.1
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhcC
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARRG 155 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~~ 155 (229)
.|+++|+++.|++... .+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|. .++|.
T Consensus 636 ~i~~~~~~~~~~~~~~--~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~---~~~G~i~~~g~---------- 700 (1522)
T TIGR00957 636 SITVHNATFTWARDLP--PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVHMKGS---------- 700 (1522)
T ss_pred cEEEEEeEEEcCCCCC--ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---cCCcEEEECCE----------
Confidence 6999999999975311 27999999999999999999999999999999999999 99997 66651
Q ss_pred CCcccCcch--hhhHHHHHHcccccc-------------------------------CCCCCCCCCCchhhhhhccCCcc
Q 027060 156 APWTFNPLL--LLNCLKNLRNQGSVY-------------------------------APSFDHGVGDPVEDDILVGLQHK 202 (229)
Q Consensus 156 ~~~~~~~~~--~~tv~e~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~~r 202 (229)
+.+.+|.+. ..|++||+.++.... ....+.|+.+|+..++++..+++
T Consensus 701 i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~ 780 (1522)
T TIGR00957 701 VAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNAD 780 (1522)
T ss_pred EEEEcCCccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 222333222 257888887653211 00122334444444455555555
Q ss_pred EEEecCCeeeecccCHHHHHHHH
Q 027060 203 VVIVDGNYLFLDGGVWKDVSSMF 225 (229)
Q Consensus 203 vLi~d~~~LlLDEP~~~~l~~~l 225 (229)
++++|+++..||....+.+.+.+
T Consensus 781 illLDEp~saLD~~~~~~i~~~l 803 (1522)
T TIGR00957 781 IYLFDDPLSAVDAHVGKHIFEHV 803 (1522)
T ss_pred EEEEcCCccccCHHHHHHHHHHH
Confidence 55555555555555666666554
No 354
>PLN03140 ABC transporter G family member; Provisional
Probab=99.65 E-value=1.5e-16 Score=164.10 Aligned_cols=99 Identities=16% Similarity=0.092 Sum_probs=71.7
Q ss_pred eEEEeeeeEEcCccc---------cccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCC
Q 027060 77 VVEARCMDEVYDALA---------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQD 146 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~---------~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~ 146 (229)
.+..+||++.++... .+..+|+|+|+.+++|++++|+|||||||||||++|+|... ..+.+|. .++|.+
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~-~g~~~G~I~inG~~ 945 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT-GGYIEGDIRISGFP 945 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCC-CCcccceEEECCcc
Confidence 588999998874211 12348999999999999999999999999999999999865 1125786 888876
Q ss_pred HHHHHhhcCCCcccCc---chhhhHHHHHHccc
Q 027060 147 PKEAHARRGAPWTFNP---LLLLNCLKNLRNQG 176 (229)
Q Consensus 147 ~~~~~~~~~~~~~~~~---~~~~tv~e~l~~~~ 176 (229)
......+..+++.+|. .+.+||.|++.+..
T Consensus 946 ~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a 978 (1470)
T PLN03140 946 KKQETFARISGYCEQNDIHSPQVTVRESLIYSA 978 (1470)
T ss_pred CChHHhhhheEEEccccccCCCCcHHHHHHHHH
Confidence 5332222223344433 34489999998754
No 355
>PLN03140 ABC transporter G family member; Provisional
Probab=99.62 E-value=3.4e-16 Score=161.56 Aligned_cols=81 Identities=16% Similarity=0.299 Sum_probs=63.9
Q ss_pred cccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCC---Cce-EecCCCHHHHHhhcCCCcccCc---chhh
Q 027060 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KAS-SFDSQDPKEAHARRGAPWTFNP---LLLL 166 (229)
Q Consensus 94 ~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~---~G~-~~~g~~~~~~~~~~~~~~~~~~---~~~~ 166 (229)
..+|+|+|+.|++|++++|+||||||||||||+|+|+++ |+ +|+ .++|++......+..+.+.+|. .+.+
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~---~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLD---PSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC---CCCcceeEEEECCEechhhcccceeEEecccccCCCcC
Confidence 448999999999999999999999999999999999998 87 897 8899876443223334444443 3448
Q ss_pred hHHHHHHcccc
Q 027060 167 NCLKNLRNQGS 177 (229)
Q Consensus 167 tv~e~l~~~~~ 177 (229)
||.|++.+...
T Consensus 255 TV~EtL~f~a~ 265 (1470)
T PLN03140 255 TVKETLDFSAR 265 (1470)
T ss_pred cHHHHHHHHHH
Confidence 99999988643
No 356
>PLN03232 ABC transporter C family member; Provisional
Probab=99.62 E-value=7.1e-16 Score=160.16 Aligned_cols=88 Identities=15% Similarity=0.196 Sum_probs=66.9
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCceEecCCCHHHHHhhcCC
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGA 156 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~g~~~~~~~~~~~~ 156 (229)
.|+++|+++.|++.. ...+|+|+||+|++|+.++|+|++|||||||+++|+|+++ |.+|.... .+..+
T Consensus 614 ~I~~~~vsF~y~~~~-~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~---~~~G~i~~--------~~~~I 681 (1495)
T PLN03232 614 AISIKNGYFSWDSKT-SKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELS---HAETSSVV--------IRGSV 681 (1495)
T ss_pred cEEEEeeEEEcCCCC-CCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCc---ccCCCEEE--------ecCcE
Confidence 599999999997531 1227999999999999999999999999999999999999 98874210 11123
Q ss_pred CcccCcchh--hhHHHHHHccc
Q 027060 157 PWTFNPLLL--LNCLKNLRNQG 176 (229)
Q Consensus 157 ~~~~~~~~~--~tv~e~l~~~~ 176 (229)
.+..|.+.+ .|++||+.++.
T Consensus 682 ayv~Q~p~Lf~gTIreNI~fg~ 703 (1495)
T PLN03232 682 AYVPQVSWIFNATVRENILFGS 703 (1495)
T ss_pred EEEcCccccccccHHHHhhcCC
Confidence 444444332 68888888764
No 357
>PLN03130 ABC transporter C family member; Provisional
Probab=99.61 E-value=1.4e-15 Score=158.68 Aligned_cols=87 Identities=17% Similarity=0.241 Sum_probs=68.1
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCC-ce-EecCCCHHHHHhhc
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-AS-SFDSQDPKEAHARR 154 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~-G~-~~~g~~~~~~~~~~ 154 (229)
.|+++|+++.|++.. ...+|+|+||+|++|+.++|+||+|||||||+++|+|+++ |.+ |. .+.+
T Consensus 614 ~I~~~nvsf~y~~~~-~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~---~~~GG~I~l~~---------- 679 (1622)
T PLN03130 614 AISIKNGYFSWDSKA-ERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP---PRSDASVVIRG---------- 679 (1622)
T ss_pred ceEEEeeEEEccCCC-CCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhc---cCCCceEEEcC----------
Confidence 599999999997531 1127999999999999999999999999999999999999 999 76 4322
Q ss_pred CCCcccCcchh--hhHHHHHHcccc
Q 027060 155 GAPWTFNPLLL--LNCLKNLRNQGS 177 (229)
Q Consensus 155 ~~~~~~~~~~~--~tv~e~l~~~~~ 177 (229)
.+.+..|.+.+ .|++||+.++..
T Consensus 680 ~Iayv~Q~p~LfngTIreNI~fg~~ 704 (1622)
T PLN03130 680 TVAYVPQVSWIFNATVRDNILFGSP 704 (1622)
T ss_pred eEEEEcCccccCCCCHHHHHhCCCc
Confidence 23444444332 688888887643
No 358
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.61 E-value=1.1e-15 Score=158.63 Aligned_cols=116 Identities=14% Similarity=0.157 Sum_probs=81.1
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhcCCCcccCcch--hhhHHHHH
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARRGAPWTFNPLL--LLNCLKNL 172 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~~~~~~~~~~~--~~tv~e~l 172 (229)
+|+|+||+|++|++++|+|||||||||||++|+|+++ |++|. .++|. +.+.+|.+. ..|++||+
T Consensus 441 ~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~---~~~G~i~~~g~----------iayv~Q~~~l~~~Ti~eNI 507 (1490)
T TIGR01271 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE---PSEGKIKHSGR----------ISFSPQTSWIMPGTIKDNI 507 (1490)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCE----------EEEEeCCCccCCccHHHHH
Confidence 7999999999999999999999999999999999999 99997 77662 222222221 14777887
Q ss_pred Hcccccc-------------------------------CCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHH
Q 027060 173 RNQGSVY-------------------------------APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV 221 (229)
Q Consensus 173 ~~~~~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l 221 (229)
.++.... ...++.|+++|+..++++..+++++++|+++..||....+++
T Consensus 508 ~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i 587 (1490)
T TIGR01271 508 IFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEI 587 (1490)
T ss_pred HhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 7653211 012233445555555556666666777777777776677777
Q ss_pred HHH
Q 027060 222 SSM 224 (229)
Q Consensus 222 ~~~ 224 (229)
.+.
T Consensus 588 ~~~ 590 (1490)
T TIGR01271 588 FES 590 (1490)
T ss_pred HHH
Confidence 753
No 359
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.60 E-value=6.6e-15 Score=131.97 Aligned_cols=154 Identities=17% Similarity=0.226 Sum_probs=100.3
Q ss_pred CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhccc--CCCCce-EecCCCHH--
Q 027060 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQDPK-- 148 (229)
Q Consensus 74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~--~p~~G~-~~~g~~~~-- 148 (229)
.+++++++|++..|........++++|||+|.+||.++|||.+|||||-..+.|+++++.. ..-+|. .++|+++.
T Consensus 3 ~~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~ 82 (534)
T COG4172 3 TMPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAA 82 (534)
T ss_pred CCcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcC
Confidence 3578999999999985545566899999999999999999999999999999999999741 123565 88998742
Q ss_pred ---HHHhhcC--CCcccCcch-----hhhHHHHHHccccccCCC-------------------CCCCCCCchhhhhhccC
Q 027060 149 ---EAHARRG--APWTFNPLL-----LLNCLKNLRNQGSVYAPS-------------------FDHGVGDPVEDDILVGL 199 (229)
Q Consensus 149 ---~~~~~~~--~~~~~~~~~-----~~tv~e~l~~~~~~~~~~-------------------~~~~~~~~~~~~l~~~~ 199 (229)
..+.-+| +.+.||.+. +.|+-+.+......+... -.....+..+.+++.|+
T Consensus 83 se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGq 162 (534)
T COG4172 83 SERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQ 162 (534)
T ss_pred CHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcch
Confidence 2233333 577777653 355555554432222110 00111233344455555
Q ss_pred CccE-----EEecCCeeeeccc-------CHHHHHHHHhh
Q 027060 200 QHKV-----VIVDGNYLFLDGG-------VWKDVSSMFDE 227 (229)
Q Consensus 200 ~~rv-----Li~d~~~LlLDEP-------~~~~l~~~l~~ 227 (229)
.+|| |+.+|++|+.||| .+.++.+++..
T Consensus 163 RQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~ 202 (534)
T COG4172 163 RQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKE 202 (534)
T ss_pred hhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHH
Confidence 5555 4455555555555 47777777654
No 360
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.57 E-value=3.8e-15 Score=153.73 Aligned_cols=82 Identities=16% Similarity=0.200 Sum_probs=62.1
Q ss_pred ccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcc-cCCCCce-EecCCCHHHHH--hhcCCCcccCc---chhhh
Q 027060 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK-IWPQKAS-SFDSQDPKEAH--ARRGAPWTFNP---LLLLN 167 (229)
Q Consensus 95 ~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~-~~p~~G~-~~~g~~~~~~~--~~~~~~~~~~~---~~~~t 167 (229)
.+|+|+|+.+++||+++|+||||||||||||+|+|++.. ..|.+|. .++|.++.... .+..+.+.+|. .+.+|
T Consensus 75 ~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lT 154 (1394)
T TIGR00956 75 DILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLT 154 (1394)
T ss_pred eeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCC
Confidence 489999999999999999999999999999999998621 1168897 89998764321 22234444444 33489
Q ss_pred HHHHHHccc
Q 027060 168 CLKNLRNQG 176 (229)
Q Consensus 168 v~e~l~~~~ 176 (229)
|.|++.+..
T Consensus 155 V~E~l~f~~ 163 (1394)
T TIGR00956 155 VGETLDFAA 163 (1394)
T ss_pred HHHHHHHHH
Confidence 999998754
No 361
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.57 E-value=1.3e-14 Score=133.08 Aligned_cols=92 Identities=20% Similarity=0.247 Sum_probs=72.3
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----H
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-----A 150 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-----~ 150 (229)
.+.++++++.=++.. ..+++++||++.+||.+|||||+|||||||.|+|.|..+ |.+|. .+||-+++. .
T Consensus 334 ~L~Ve~l~~~PPg~~--~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~---p~~G~VRLDga~l~qWd~e~l 408 (580)
T COG4618 334 ALSVERLTAAPPGQK--KPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP---PTSGSVRLDGADLRQWDREQL 408 (580)
T ss_pred eeeEeeeeecCCCCC--CcceecceeEecCCceEEEECCCCccHHHHHHHHHcccc---cCCCcEEecchhhhcCCHHHh
Confidence 699999998665543 347889999999999999999999999999999999999 99996 999986533 2
Q ss_pred HhhcCCCcccCcchh--hhHHHHHHcc
Q 027060 151 HARRGAPWTFNPLLL--LNCLKNLRNQ 175 (229)
Q Consensus 151 ~~~~~~~~~~~~~~~--~tv~e~l~~~ 175 (229)
-+.+| +.+|.-.+ -|+.||+.-.
T Consensus 409 G~hiG--YLPQdVeLF~GTIaeNIaRf 433 (580)
T COG4618 409 GRHIG--YLPQDVELFDGTIAENIARF 433 (580)
T ss_pred ccccC--cCcccceecCCcHHHHHHhc
Confidence 33344 44443332 5899999743
No 362
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.5e-14 Score=130.09 Aligned_cols=95 Identities=20% Similarity=0.215 Sum_probs=75.7
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA 152 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~ 152 (229)
.+.+.+|++.|+... .+|+++||+++.|+.++|+|++|+||||++++|..++. +.+|. .++|+++.. ...
T Consensus 262 ~v~F~~V~F~y~~~r---~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD---~~sG~I~id~qdir~vtq~sl 335 (497)
T COG5265 262 AVAFINVSFAYDPRR---PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD---VNSGSITIDGQDIRDVTQQSL 335 (497)
T ss_pred eEEEEEEEeeccccc---hhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC---CcCceEEEcchhHHHhHHHHH
Confidence 378999999998753 27889999999999999999999999999999999999 99997 999998643 233
Q ss_pred hcCCCcccCcc--hhhhHHHHHHcccc
Q 027060 153 RRGAPWTFNPL--LLLNCLKNLRNQGS 177 (229)
Q Consensus 153 ~~~~~~~~~~~--~~~tv~e~l~~~~~ 177 (229)
+..++.++|+- ...|...|+.++..
T Consensus 336 R~aIg~VPQDtvLFNDti~yni~ygr~ 362 (497)
T COG5265 336 RRAIGIVPQDTVLFNDTIAYNIKYGRP 362 (497)
T ss_pred HHHhCcCcccceehhhhHHHHHhccCc
Confidence 33344444443 33688888887643
No 363
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.55 E-value=1e-14 Score=134.37 Aligned_cols=146 Identities=18% Similarity=0.150 Sum_probs=91.6
Q ss_pred CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCceEecCCCHHHHHhh
Q 027060 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHAR 153 (229)
Q Consensus 74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~g~~~~~~~~~ 153 (229)
+-|+|.+.|+++.|.+.. .++++++|-|..++.+++|||||||||||||+++|.+. |..|....+......+..
T Consensus 386 p~pvi~~~nv~F~y~~~~---~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~---p~~G~vs~~~H~~~~~y~ 459 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDNP---MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ---PTIGMVSRHSHNKLPRYN 459 (614)
T ss_pred CCCeEEEeccccCCCCcc---hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc---cccccccccccccchhhh
Confidence 467999999999998763 37889999999999999999999999999999999999 999963322211111111
Q ss_pred cCCCcccCcchhhhHHHHHHcccc--------------------c---cCCCCCCCCCCchhhhhhccCCccEEEecCCe
Q 027060 154 RGAPWTFNPLLLLNCLKNLRNQGS--------------------V---YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 210 (229)
Q Consensus 154 ~~~~~~~~~~~~~tv~e~l~~~~~--------------------~---~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~ 210 (229)
+. ..++.....+..+++.-... . .....+.++..++.-.......+.+|++|+|+
T Consensus 460 Qh--~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPt 537 (614)
T KOG0927|consen 460 QH--LAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPT 537 (614)
T ss_pred hh--hHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCC
Confidence 11 01111111333333321100 0 00112234444544444555566667777777
Q ss_pred eeecccCHHHHHHHHhh
Q 027060 211 LFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 211 LlLDEP~~~~l~~~l~~ 227 (229)
..||-|+...+.+.|.+
T Consensus 538 nhLDi~tid~laeaiNe 554 (614)
T KOG0927|consen 538 NHLDIETIDALAEAINE 554 (614)
T ss_pred cCCCchhHHHHHHHHhc
Confidence 77777777777776654
No 364
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.55 E-value=1.9e-14 Score=137.90 Aligned_cols=150 Identities=17% Similarity=0.209 Sum_probs=101.5
Q ss_pred eEEEeeeeEEcCccc-cccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH--Hh
Q 027060 77 VVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA--HA 152 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~-~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~--~~ 152 (229)
-+..++++....++. ....+|++||..+++||+.||+||+||||||||++|+|....-...+|. .++|+..... +.
T Consensus 25 ~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~ 104 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRK 104 (613)
T ss_pred eeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhh
Confidence 366777777665532 1234799999999999999999999999999999999988621236786 8999654333 33
Q ss_pred hcCC-CcccCcchhhhHHHHHHccccccCCCC-C-----------------CCCCCchh-----hhhhccCCccE-----
Q 027060 153 RRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSF-D-----------------HGVGDPVE-----DDILVGLQHKV----- 203 (229)
Q Consensus 153 ~~~~-~~~~~~~~~~tv~e~l~~~~~~~~~~~-~-----------------~~~~~~~~-----~~l~~~~~~rv----- 203 (229)
..++ .+.....+.+||.|.+.+...+..+.- + ....+... ..++.|++.|+
T Consensus 105 ~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~E 184 (613)
T KOG0061|consen 105 ISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALE 184 (613)
T ss_pred eeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHH
Confidence 3343 333344556999999998776654431 1 00111111 24667788888
Q ss_pred EEecCCeeeecccC-------HHHHHHHHh
Q 027060 204 VIVDGNYLFLDGGV-------WKDVSSMFD 226 (229)
Q Consensus 204 Li~d~~~LlLDEP~-------~~~l~~~l~ 226 (229)
|+.||.+|+||||+ ..++.+++.
T Consensus 185 ll~~P~iLflDEPTSGLDS~sA~~vv~~Lk 214 (613)
T KOG0061|consen 185 LLTDPSILFLDEPTSGLDSFSALQVVQLLK 214 (613)
T ss_pred HHcCCCEEEecCCCCCcchhhHHHHHHHHH
Confidence 88889999999985 555555444
No 365
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.54 E-value=1.9e-15 Score=134.58 Aligned_cols=113 Identities=19% Similarity=0.221 Sum_probs=70.7
Q ss_pred EEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH-HhhcCCCcccCcc---hhhhHHHHHHccccccC------
Q 027060 112 LAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA-HARRGAPWTFNPL---LLLNCLKNLRNQGSVYA------ 180 (229)
Q Consensus 112 IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~-~~~~~~~~~~~~~---~~~tv~e~l~~~~~~~~------ 180 (229)
|+||||||||||+++|+|+++ |++|. .++|+++... ..+..+.+.+|.+ +.+|+.+|+.++.....
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~---p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~ 77 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ---PDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEI 77 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC---CCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHH
Confidence 689999999999999999999 99997 8888754221 1223444445443 34799999987532110
Q ss_pred ---------------------CCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 181 ---------------------PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 181 ---------------------~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
..++.++.+++..+.++..+++++++|+|+..||...+..+++++..
T Consensus 78 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~ 145 (325)
T TIGR01187 78 KPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKT 145 (325)
T ss_pred HHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 01122333444444444455555555555555555567777776653
No 366
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.54 E-value=4.1e-14 Score=126.61 Aligned_cols=140 Identities=18% Similarity=0.171 Sum_probs=92.0
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH--HHhh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE--AHAR 153 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~--~~~~ 153 (229)
-|+++||.+.|.+.. ..+..||++|++||++.|+|.||||||||+++|+|+.+ |++|+ +++|+.+.. ....
T Consensus 322 ~lelrnvrfay~~~~---FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~---PqsG~I~ldg~pV~~e~ledY 395 (546)
T COG4615 322 TLELRNVRFAYQDNA---FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQ---PQSGEILLDGKPVSAEQLEDY 395 (546)
T ss_pred ceeeeeeeeccCccc---ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccC---CCCCceeECCccCCCCCHHHH
Confidence 599999999998753 36889999999999999999999999999999999999 99997 899985321 1011
Q ss_pred cC-CCcccCcchh----------------hhHHHHHHcccc-------ccCCCCCCCCCCchhhhhhccCCccEEEecCC
Q 027060 154 RG-APWTFNPLLL----------------LNCLKNLRNQGS-------VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN 209 (229)
Q Consensus 154 ~~-~~~~~~~~~~----------------~tv~e~l~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~ 209 (229)
++ +.-+|.++.+ ..-++.+.+... +..-..+.+++.|.+..+++.+...|+++|++
T Consensus 396 R~LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEW 475 (546)
T COG4615 396 RKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEW 475 (546)
T ss_pred HHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehh
Confidence 11 1111111110 111222222111 11112345666777777777777788888887
Q ss_pred eeeecccCHHHHH
Q 027060 210 YLFLDGGVWKDVS 222 (229)
Q Consensus 210 ~LlLDEP~~~~l~ 222 (229)
-.=-|+-.++.+.
T Consensus 476 AADQDPaFRR~FY 488 (546)
T COG4615 476 AADQDPAFRREFY 488 (546)
T ss_pred hccCChHHHHHHH
Confidence 7766665555443
No 367
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.53 E-value=1.8e-14 Score=145.87 Aligned_cols=146 Identities=18% Similarity=0.215 Sum_probs=104.2
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCH-----HHH
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDP-----KEA 150 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~-----~~~ 150 (229)
-|+++|++.+|.... + .+|+||||+|++||.|||||..|||||||+.+|-++.. |.+|. .+||.|+ .+.
T Consensus 1138 ~I~f~~~~~RYrp~l-p-~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e---~~~G~I~IDgvdI~~igL~dL 1212 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRPNL-P-LVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE---PAEGEILIDGVDISKIGLHDL 1212 (1381)
T ss_pred eEEEEEeEEEeCCCC-c-chhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC---ccCCeEEEcCeecccccHHHH
Confidence 599999999998752 2 38999999999999999999999999999999999999 99997 9999874 445
Q ss_pred HhhcCC-CcccCcch-----------------hhhHHHHHHcc-------cccc------CCCCCCCCCCchhhhhhccC
Q 027060 151 HARRGA-PWTFNPLL-----------------LLNCLKNLRNQ-------GSVY------APSFDHGVGDPVEDDILVGL 199 (229)
Q Consensus 151 ~~~~~~-~~~~~~~~-----------------~~tv~e~l~~~-------~~~~------~~~~~~~~~~~~~~~l~~~~ 199 (229)
+.+.++ ||.+..+. .+.++|...+. ..+. +..++.|+.|.+..++++..
T Consensus 1213 RsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr 1292 (1381)
T KOG0054|consen 1213 RSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLR 1292 (1381)
T ss_pred HhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhc
Confidence 556664 55543221 12222222211 1111 12345566666677777777
Q ss_pred CccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 200 ~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+.|||++||.+.-.|..+-..+.+.+.+
T Consensus 1293 ~skILvLDEATAsVD~~TD~lIQ~tIR~ 1320 (1381)
T KOG0054|consen 1293 KSKILVLDEATASVDPETDALIQKTIRE 1320 (1381)
T ss_pred cCCEEEEecccccCChHHHHHHHHHHHH
Confidence 8888888888888888765555555543
No 368
>PTZ00243 ABC transporter; Provisional
Probab=99.48 E-value=4.1e-14 Score=147.40 Aligned_cols=68 Identities=13% Similarity=0.118 Sum_probs=53.3
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhcCCCcccCcch--hhhHHHHH
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARRGAPWTFNPLL--LLNCLKNL 172 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~~~~~~~~~~~--~~tv~e~l 172 (229)
+|+|+||+|++|++++|+||||||||||+++|+|+++ |++|. .+.+ + +.+.+|.+. ..|+.||+
T Consensus 675 iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~---~~~G~i~~~~--------~--i~yv~Q~~~l~~~Tv~enI 741 (1560)
T PTZ00243 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE---ISEGRVWAER--------S--IAYVPQQAWIMNATVRGNI 741 (1560)
T ss_pred eEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECC--------e--EEEEeCCCccCCCcHHHHH
Confidence 7999999999999999999999999999999999999 99997 4321 2 223333221 25788888
Q ss_pred Hccc
Q 027060 173 RNQG 176 (229)
Q Consensus 173 ~~~~ 176 (229)
.++.
T Consensus 742 ~~~~ 745 (1560)
T PTZ00243 742 LFFD 745 (1560)
T ss_pred HcCC
Confidence 7753
No 369
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=99.46 E-value=1.4e-13 Score=115.43 Aligned_cols=126 Identities=47% Similarity=0.783 Sum_probs=101.9
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHHHHhcc--------------cCCCCce-EecC-----CCHHHHHhhcCCCcccCcc
Q 027060 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINK--------------IWPQKAS-SFDS-----QDPKEAHARRGAPWTFNPL 163 (229)
Q Consensus 104 i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~--------------~~p~~G~-~~~g-----~~~~~~~~~~~~~~~~~~~ 163 (229)
-+..+.+|++|+.|+||||++..+..--+. .+|..|. +... +++...+.++|.++.|+..
T Consensus 116 ~n~~~l~glag~pGtgkst~~a~v~~aWp~~~~~f~~e~i~iaiivPMDGFHlsr~~LD~f~dP~~AharRGapwTFD~~ 195 (323)
T KOG2702|consen 116 SNNEELTGLAGRPGTGKSTRIAAVDNAWPVNVNKFAQESINIAIIVPMDGFHLSRRCLDLFKDPQTAHARRGAPWTFDSN 195 (323)
T ss_pred ccchheeeeecCCCCcchhHHHHHHhhcchhhhhhhhhhcceeEEecccchhhhHHHHHhhcChHHHHhhcCCCcccCHH
Confidence 345688999999999999999998873221 0122221 1000 1466678899999999998
Q ss_pred hhhhHHHHHH--ccccccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhhhC
Q 027060 164 LLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 229 (229)
Q Consensus 164 ~~~tv~e~l~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~~~ 229 (229)
.+++...-+. --..++.|.|+++.++.+...+.+....||+|+|++||+||+|+|+.+.++++.+|
T Consensus 196 lfl~l~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGnYlLl~~~~Wkdi~k~~d~k~ 263 (323)
T KOG2702|consen 196 LFLQLCKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGNYLLLDQENWKDIYKTLDDKY 263 (323)
T ss_pred HHHHHHHHHhhcCCCceeccccccccCCCCccceeecccceEEEEeccEEEecCccHHHHHHHhhhhe
Confidence 8888888777 45678899999999999999999999999999999999999999999999999875
No 370
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.43 E-value=5.4e-14 Score=116.82 Aligned_cols=126 Identities=14% Similarity=0.169 Sum_probs=69.8
Q ss_pred cceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce----------EecCCCHHHHHhhcCCCcccCcchh--
Q 027060 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS----------SFDSQDPKEAHARRGAPWTFNPLLL-- 165 (229)
Q Consensus 98 ~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~----------~~~g~~~~~~~~~~~~~~~~~~~~~-- 165 (229)
+++++++.+| +++|+||||||||||+++|+|++. +..|. .+.|++.........+...||++..
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~ 89 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLG---EQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRY 89 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhc---cccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCce
Confidence 4789999999 999999999999999999999987 65433 2333332111111223344443322
Q ss_pred -----hhHHHHHHccccccC--CCCCCCCCCchhhhhhcc----CCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 166 -----LNCLKNLRNQGSVYA--PSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 166 -----~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~----~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
..+.+.+........ ..++.++.+++..+.++. ..++++++|+|...||......+.+++..
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~ 162 (197)
T cd03278 90 SIISQGDVSEIIEAPGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKE 162 (197)
T ss_pred eEEehhhHHHHHhCCCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 122232322111111 122334444444444332 23456666666666666667777777654
No 371
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=99.42 E-value=3.4e-13 Score=118.18 Aligned_cols=124 Identities=23% Similarity=0.360 Sum_probs=88.6
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-Ee---cCCCH-HHHHh------hcCCCcccCcchhhhHHHHHH
Q 027060 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SF---DSQDP-KEAHA------RRGAPWTFNPLLLLNCLKNLR 173 (229)
Q Consensus 105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~---~g~~~-~~~~~------~~~~~~~~~~~~~~tv~e~l~ 173 (229)
+.-.++||+|+||||||||+++|.+++.. .|.+|. .+ +|... ..... +.+.+..++...+...+..+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~-~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSR-WPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhh-cCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHHH
Confidence 34579999999999999999999999852 234553 33 44321 11112 233444455555567777777
Q ss_pred cccc-ccCCCCCCCCCCchhhhhhccCCccEEEecCCeee------ecccCHHHHHHHHhhhC
Q 027060 174 NQGS-VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLF------LDGGVWKDVSSMFDEKW 229 (229)
Q Consensus 174 ~~~~-~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~Ll------LDEP~~~~l~~~l~~~~ 229 (229)
.+.. +..|.|++..+++..........++|+|+|+.+++ +|++.|..+.+++|.+|
T Consensus 139 ~g~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~~~d~~D~~I 201 (290)
T TIGR00554 139 SGKPNVTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSI 201 (290)
T ss_pred CCCCceecCccccccCCcCCCCeEEcCCCCEEEECCchHhCCchhcccccchHHHHHhCCEEE
Confidence 6664 77899999888887766555678999999999888 56778999999998764
No 372
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.41 E-value=4.9e-13 Score=112.96 Aligned_cols=118 Identities=24% Similarity=0.296 Sum_probs=84.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCC--CCce-E---ecCCCHH-HHHh------hcCCCcccCcchhhhHHHHHHcc
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRINKIWP--QKAS-S---FDSQDPK-EAHA------RRGAPWTFNPLLLLNCLKNLRNQ 175 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll~~~~p--~~G~-~---~~g~~~~-~~~~------~~~~~~~~~~~~~~tv~e~l~~~ 175 (229)
++||.|+||||||||++.|.+++. + .++. . .+|.-.. .... +.+.+..++...+...++.+..+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~---~~~~~~~v~vi~~D~f~~~~~~~~~~~~~~~~g~p~~~d~~~l~~~L~~l~~g 77 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS---RWPDHPNVELITTDGFLYPNKELIERGLMDRKGFPESYDMEALLKFLKDIKSG 77 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh---hcCCCCcEEEEecCcccCcHHHHHHhhhhhcCCCcccCCHHHHHHHHHHHHCC
Confidence 589999999999999999999996 4 3332 2 2544211 1111 23455555555567777777773
Q ss_pred -ccccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeec-ccCHHHHHHHHhhhC
Q 027060 176 -GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD-GGVWKDVSSMFDEKW 229 (229)
Q Consensus 176 -~~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLD-EP~~~~l~~~l~~~~ 229 (229)
.....|.|++..+++...........+|+|+|+.+++.| +++|..+++++|.+|
T Consensus 78 ~~~v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~D~~i 133 (220)
T cd02025 78 KKNVKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFFDFSI 133 (220)
T ss_pred CCcEEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhhHHHhCCeEE
Confidence 567788899888877666554456789999999999988 467999999988764
No 373
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.39 E-value=1.2e-12 Score=106.06 Aligned_cols=59 Identities=31% Similarity=0.394 Sum_probs=50.8
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCH
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDP 147 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~ 147 (229)
++++++|+..- .|-.+|.++..||++-+|||||||||||+-.++|++ |.+|+ .+.|.++
T Consensus 3 l~qln~v~~~t--------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~----~~sGsi~~~G~~l 62 (248)
T COG4138 3 LMQLNDVAEST--------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT----SGSGSIQFAGQPL 62 (248)
T ss_pred eeeeccccccc--------cccccccccccceEEEEECCCCccHHHHHHHHhCCC----CCCceEEECCcch
Confidence 67888887543 355889999999999999999999999999999988 57886 8999875
No 374
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.38 E-value=7.4e-13 Score=134.39 Aligned_cols=135 Identities=13% Similarity=0.138 Sum_probs=99.8
Q ss_pred CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHh
Q 027060 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHA 152 (229)
Q Consensus 74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~ 152 (229)
....++++|.++..+.. .+...|+||||+|++|+.+||+|+-|||||+||.+|.|.++ ..+|. .+.|.
T Consensus 515 ~~~~i~i~~~sfsW~~~-~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~---~~sG~v~v~gs------- 583 (1381)
T KOG0054|consen 515 GENAIEIKNGSFSWDSE-SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP---KLSGSVAVNGS------- 583 (1381)
T ss_pred CCceEEEeeeeEecCCC-CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc---cccceEEEcCe-------
Confidence 44579999999998763 33337999999999999999999999999999999999999 99997 77764
Q ss_pred hcCCCcccCcc--hhhhHHHHHHccccccCC-------------------------------CCCCCCCCchhhhhhccC
Q 027060 153 RRGAPWTFNPL--LLLNCLKNLRNQGSVYAP-------------------------------SFDHGVGDPVEDDILVGL 199 (229)
Q Consensus 153 ~~~~~~~~~~~--~~~tv~e~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~l~~~~ 199 (229)
+.+..|.+ ..-|++||+.|+..+... ..+.|+++|+..++++-+
T Consensus 584 ---iaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~ 660 (1381)
T KOG0054|consen 584 ---VAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQ 660 (1381)
T ss_pred ---EEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhc
Confidence 33333333 226888999887654311 123455666666666777
Q ss_pred CccEEEecCCeeeecccCHHHHH
Q 027060 200 QHKVVIVDGNYLFLDGGVWKDVS 222 (229)
Q Consensus 200 ~~rvLi~d~~~LlLDEP~~~~l~ 222 (229)
++++.++|-++--+|...-+.+.
T Consensus 661 ~adIYLLDDplSAVDahvg~~if 683 (1381)
T KOG0054|consen 661 DADIYLLDDPLSAVDAHVGKHIF 683 (1381)
T ss_pred cCCEEEEcCcchhhhHhhhHHHH
Confidence 77777777777777776555544
No 375
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.36 E-value=5.1e-13 Score=123.30 Aligned_cols=52 Identities=23% Similarity=0.347 Sum_probs=49.0
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
-+.++++++.|.+.. .++|++|++.+|+.+||+|+|||||||+|++|.|-..
T Consensus 75 dvk~~sls~s~~g~~----l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~ 126 (614)
T KOG0927|consen 75 DVKIESLSLSFHGVE----LIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREV 126 (614)
T ss_pred cceeeeeeeccCCce----eeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCC
Confidence 599999999998876 8899999999999999999999999999999999876
No 376
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.36 E-value=4.9e-13 Score=113.75 Aligned_cols=44 Identities=18% Similarity=0.225 Sum_probs=35.2
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll 131 (229)
|+++|. |.|++.. ++++++ |++++|+||||||||||+++|++++
T Consensus 4 i~~~nf-ksy~~~~----~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l 47 (243)
T cd03272 4 VIIQGF-KSYKDQT----VIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVL 47 (243)
T ss_pred EEEeCc-cCcccCc----ccccCC-----CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 667776 4677654 666665 7899999999999999999998553
No 377
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.35 E-value=9e-13 Score=111.62 Aligned_cols=30 Identities=27% Similarity=0.436 Sum_probs=28.6
Q ss_pred ccccceeeeecCCcEEEEEcCCCCcHHHHH
Q 027060 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLA 124 (229)
Q Consensus 95 ~~l~~isl~i~~Ge~v~IiGpNGsGKSTLl 124 (229)
.+|+++||+|++||++||+|+||||||||+
T Consensus 9 ~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 9 HNLKNVDVDIPRNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred hccccceeecCCCcEEEEEcCCCCCHHHHH
Confidence 389999999999999999999999999996
No 378
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.35 E-value=4.2e-12 Score=105.30 Aligned_cols=147 Identities=14% Similarity=-0.006 Sum_probs=89.6
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---- 149 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---- 149 (229)
.-.|++.++.+.|.... + ++-|+|++++.|....++|.||||||||||+|.|-.- ...|. .+.|.+.-.
T Consensus 11 ~~aievsgl~f~y~~~d-P--~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhm---v~~~~v~VlgrsaFhDt~l 84 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSD-P--IFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHM---VGGGVVQVLGRSAFHDTSL 84 (291)
T ss_pred cceEEEeccEEecccCC-c--eEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccc---ccCCeEEEcCcCccccccc
Confidence 34699999999998753 3 5669999999999999999999999999999999543 33343 555542100
Q ss_pred ------------HHhhcCCCcccCcchhhhHHHHHHcc------------------ccccCCCCCCCCCCchhhhhhccC
Q 027060 150 ------------AHARRGAPWTFNPLLLLNCLKNLRNQ------------------GSVYAPSFDHGVGDPVEDDILVGL 199 (229)
Q Consensus 150 ------------~~~~~~~~~~~~~~~~~tv~e~l~~~------------------~~~~~~~~~~~~~~~~~~~l~~~~ 199 (229)
-....++.........+++.+.+.-. .+......+.++..++...+-+..
T Consensus 85 ~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~ 164 (291)
T KOG2355|consen 85 ESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLK 164 (291)
T ss_pred cccCceeEecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhccc
Confidence 00111111100111113333322211 111111223445555554444445
Q ss_pred CccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 200 ~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
.=+||++|+-++=||--.+..+.+++.+
T Consensus 165 PfkVLLLDEVTVDLDVlARadLLeFlke 192 (291)
T KOG2355|consen 165 PFKVLLLDEVTVDLDVLARADLLEFLKE 192 (291)
T ss_pred ceeEEEeeeeEeehHHHHHHHHHHHHHH
Confidence 5677888888888888888888888764
No 379
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.35 E-value=4.2e-12 Score=119.88 Aligned_cols=147 Identities=14% Similarity=0.036 Sum_probs=101.8
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-Eec-CCCH-----
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFD-SQDP----- 147 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~-g~~~----- 147 (229)
...|.++|++..-++.. ..+++++|+|++|+.+.|.|+||||||||+|+|+|+-+ -.+|. .+- +.+.
T Consensus 390 ~~~i~~~nl~l~~p~~~---~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP---~g~G~I~~P~~~~~lflpQ 463 (604)
T COG4178 390 DHGITLENLSLRTPDGQ---TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWP---WGSGRISMPADSALLFLPQ 463 (604)
T ss_pred cceeEEeeeeEECCCCC---eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCc---cCCCceecCCCCceEEecC
Confidence 35799999999988753 37899999999999999999999999999999999987 55664 322 2210
Q ss_pred ------HHHHhhcCCCcccC---cchhhhHHHHHHccccc--------cCCCCCCCCCCchhhhhhccCCccEEEecCCe
Q 027060 148 ------KEAHARRGAPWTFN---PLLLLNCLKNLRNQGSV--------YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 210 (229)
Q Consensus 148 ------~~~~~~~~~~~~~~---~~~~~tv~e~l~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~ 210 (229)
-..+....+|.... +..+..++..+.++... +....+.+..+++.-+..+..+++++++||-+
T Consensus 464 ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEAT 543 (604)
T COG4178 464 RPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEAT 543 (604)
T ss_pred CCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecch
Confidence 01122233333332 22223344333332211 11233457778877777788888999999999
Q ss_pred eeecccCHHHHHHHHhh
Q 027060 211 LFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 211 LlLDEP~~~~l~~~l~~ 227 (229)
--|||.....++++++.
T Consensus 544 sALDe~~e~~l~q~l~~ 560 (604)
T COG4178 544 SALDEETEDRLYQLLKE 560 (604)
T ss_pred hccChHHHHHHHHHHHh
Confidence 99999999999888875
No 380
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.31 E-value=2.8e-12 Score=128.38 Aligned_cols=140 Identities=14% Similarity=0.065 Sum_probs=91.0
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH--HHhh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE--AHAR 153 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~--~~~~ 153 (229)
+..-.|+.+.-..+..+..+|+||+=-+.+|-.+||+|+|||||||||++|+|-.. ....+|. .++|....+ -.++
T Consensus 787 V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t-~G~I~Gdi~i~G~p~~q~tF~R~ 865 (1391)
T KOG0065|consen 787 VFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKT-GGYIEGDILISGFPKDQETFARV 865 (1391)
T ss_pred eEEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcc-cceEEeEEEECCeeCchhhhccc
Confidence 44445555444322234458999999999999999999999999999999999643 1234565 889987653 2444
Q ss_pred cCCC-cccCcchhhhHHHHHHccccccCCCC-CC-----------------CCCCchhhh----hhccCCccE-----EE
Q 027060 154 RGAP-WTFNPLLLLNCLKNLRNQGSVYAPSF-DH-----------------GVGDPVEDD----ILVGLQHKV-----VI 205 (229)
Q Consensus 154 ~~~~-~~~~~~~~~tv~e~l~~~~~~~~~~~-~~-----------------~~~~~~~~~----l~~~~~~rv-----Li 205 (229)
.|+. ++....+.+||+|.|.+...+..+.- +. ...+.+.+. ++..++.|+ |+
T Consensus 866 ~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELv 945 (1391)
T KOG0065|consen 866 SGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELV 945 (1391)
T ss_pred cceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEe
Confidence 5653 33333455999999999876654321 10 011111111 444556666 77
Q ss_pred ecC-CeeeecccC
Q 027060 206 VDG-NYLFLDGGV 217 (229)
Q Consensus 206 ~d~-~~LlLDEP~ 217 (229)
.+| .+++||||+
T Consensus 946 A~P~~ilFLDEPT 958 (1391)
T KOG0065|consen 946 ANPSSILFLDEPT 958 (1391)
T ss_pred cCCceeEEecCCC
Confidence 788 888888884
No 381
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.30 E-value=6.1e-12 Score=104.75 Aligned_cols=152 Identities=18% Similarity=0.292 Sum_probs=100.1
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC-CCce-EecCCC-----H
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKAS-SFDSQD-----P 147 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p-~~G~-~~~g~~-----~ 147 (229)
|+++.+.|++..+......+.+++++|+++++||+-|+||.+|||||-..|.|+|..+.-+. +... .+++-+ +
T Consensus 1 M~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~P 80 (330)
T COG4170 1 MPLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred CCcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCCh
Confidence 56789999999997766678899999999999999999999999999999999998762111 1112 333333 2
Q ss_pred HHHHhhcC--CCcccCcchh-----hhH----HHHHHcc---cccc-----------------------------CCCCC
Q 027060 148 KEAHARRG--APWTFNPLLL-----LNC----LKNLRNQ---GSVY-----------------------------APSFD 184 (229)
Q Consensus 148 ~~~~~~~~--~~~~~~~~~~-----~tv----~e~l~~~---~~~~-----------------------------~~~~~ 184 (229)
...+.-+| +.+.||.+.- .++ .+|+-.. .+.+ -....
T Consensus 81 r~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElT 160 (330)
T COG4170 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELT 160 (330)
T ss_pred HHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhc
Confidence 22222233 5667776532 222 2222110 0000 00112
Q ss_pred CCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHh
Q 027060 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 226 (229)
Q Consensus 185 ~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~ 226 (229)
.+..+++..++++..++|+||.|++..-+|.-++.++..++.
T Consensus 161 eGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs 202 (330)
T COG4170 161 EGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLS 202 (330)
T ss_pred cCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHH
Confidence 456677777777777888888888888877778888887764
No 382
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=1.6e-11 Score=113.00 Aligned_cols=49 Identities=22% Similarity=0.266 Sum_probs=46.0
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHH
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~g 129 (229)
-|.+++++..||++. .|++-++++..|..+||+|+||+|||||||+|+.
T Consensus 80 Di~~~~fdLa~G~k~----LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 80 DIHIDNFDLAYGGKI----LLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred ceeeeeeeeeecchh----hhcCCceeeecccccceeCCCCCcHHHHHHHHHh
Confidence 478889999999876 8999999999999999999999999999999987
No 383
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=99.28 E-value=1.5e-11 Score=104.18 Aligned_cols=121 Identities=40% Similarity=0.635 Sum_probs=80.7
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-Ee----cCCCH-HHHHhhcC------CCcccCcchhhhHHHHH
Q 027060 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SF----DSQDP-KEAHARRG------APWTFNPLLLLNCLKNL 172 (229)
Q Consensus 105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~----~g~~~-~~~~~~~~------~~~~~~~~~~~tv~e~l 172 (229)
.+..++||+|+||||||||++.|+++++ +.+|. .+ ++... .......+ .+..++...+..++..+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~---~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~l~~l 107 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ---QDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGAPETFDVAGLAALLRRL 107 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh---hccCCceEEEecccccCCHHHHHhcccccccCCCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999999999 88884 22 22211 11111222 22222323334555555
Q ss_pred Hccc-cccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhhh
Q 027060 173 RNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 228 (229)
Q Consensus 173 ~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~~ 228 (229)
..+. ....+.|+....+............++++.|+.+++++++.|..+.+.+|.+
T Consensus 108 ~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~v 164 (229)
T PRK09270 108 RAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFT 164 (229)
T ss_pred HcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHHhhCCEE
Confidence 5554 5566778777666555444444467899999999999998888888877654
No 384
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=5.6e-12 Score=114.44 Aligned_cols=61 Identities=21% Similarity=0.376 Sum_probs=54.7
Q ss_pred CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce
Q 027060 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (229)
Q Consensus 74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~ 140 (229)
..|++-+.+|++.|.+.. + .+.+++|-|.--..|+||||||.||||||++|.|.+. |..|+
T Consensus 583 ~PPvLGlH~VtFgy~gqk-p--LFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~---P~~GE 643 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYPGQK-P--LFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD---PNDGE 643 (807)
T ss_pred CCCeeecccccccCCCCC-c--hhhcccccccccceeEEECCCCccHHHHHHHHhcCCC---CCcch
Confidence 456899999999997653 2 6779999999999999999999999999999999999 99986
No 385
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.25 E-value=2.5e-12 Score=107.34 Aligned_cols=123 Identities=15% Similarity=0.149 Sum_probs=68.9
Q ss_pred eeeecCCcEEEEEcCCCCcHHHHHHHHH----HHhcccCCCCceEecCCCH-HHHHhhcCCCcccCcc--------hhhh
Q 027060 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVV----RRINKIWPQKASSFDSQDP-KEAHARRGAPWTFNPL--------LLLN 167 (229)
Q Consensus 101 sl~i~~Ge~v~IiGpNGsGKSTLlk~L~----gll~~~~p~~G~~~~g~~~-~~~~~~~~~~~~~~~~--------~~~t 167 (229)
++++.+| +++|+||||||||||+++|. |... +..|......+. ........+...|+.. ..++
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~---~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~ 92 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELP---PNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLA 92 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCC---cccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence 3455566 99999999999999999996 5555 655532111111 0001111122222222 1258
Q ss_pred HHHHHHccccc--------cCCCCCCCCCCch------hhhhhccCCccEEEecCCeeeecccCHH-HHHHHHhh
Q 027060 168 CLKNLRNQGSV--------YAPSFDHGVGDPV------EDDILVGLQHKVVIVDGNYLFLDGGVWK-DVSSMFDE 227 (229)
Q Consensus 168 v~e~l~~~~~~--------~~~~~~~~~~~~~------~~~l~~~~~~rvLi~d~~~LlLDEP~~~-~l~~~l~~ 227 (229)
+++|+.+...- ....++.++.+++ ....++...++++++|+++..||...+. .+.+++.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~ 167 (204)
T cd03240 93 ILENVIFCHQGESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEE 167 (204)
T ss_pred HhhceeeechHHHHHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHH
Confidence 88888654211 1123344444432 2333445667777777777777776777 78777754
No 386
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.24 E-value=9.5e-12 Score=93.50 Aligned_cols=79 Identities=19% Similarity=0.071 Sum_probs=57.3
Q ss_pred ccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhh---cCCCcccCcchhhhHHH
Q 027060 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHAR---RGAPWTFNPLLLLNCLK 170 (229)
Q Consensus 95 ~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~---~~~~~~~~~~~~~tv~e 170 (229)
.+|++++|++.+|++++|+||||||||||++++. +|. .+.|.++...... .-..+.+|.....++++
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~---------~G~i~~~g~di~~~~~~~~~~~~~~~~q~lf~~ti~~ 73 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI---------KRKHRLVGDDNVEIREDSKDELIGRNPELGLEIRLRL 73 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh---------CCeEEEeeEeHHHhhhhhcCCEEEEechhcchhhHHh
Confidence 3799999999999999999999999999999975 344 7778775432221 11233444455589999
Q ss_pred HHHccccccCCC
Q 027060 171 NLRNQGSVYAPS 182 (229)
Q Consensus 171 ~l~~~~~~~~~~ 182 (229)
||.+...++...
T Consensus 74 Ni~~~~~~~~~~ 85 (107)
T cd00820 74 NIFLITKKTVNV 85 (107)
T ss_pred hceeeeEEEEee
Confidence 999865554433
No 387
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.23 E-value=2.2e-12 Score=108.38 Aligned_cols=43 Identities=16% Similarity=0.302 Sum_probs=36.6
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHH
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gl 130 (229)
|+++|.. .|++.. +++++++ +++||+||||||||||+++|.-.
T Consensus 6 l~l~nfk-~~~~~~----~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~ 48 (212)
T cd03274 6 LVLENFK-SYAGEQ----VIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV 48 (212)
T ss_pred EEEECcc-cCCCCe----eeccCCC-----CeEEEECCCCCCHHHHHHHHHHH
Confidence 7788875 887765 7888887 89999999999999999999844
No 388
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.21 E-value=5.6e-12 Score=105.70 Aligned_cols=47 Identities=19% Similarity=0.290 Sum_probs=37.5
Q ss_pred eEEEeeeeEEcCccccccccccceeeeec-CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVN-VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~-~Ge~v~IiGpNGsGKSTLlk~L~gll 131 (229)
-|+++|+. .|.+.. +++|... +|++++|+|+||||||||+++|++.+
T Consensus 5 ~i~l~nf~-~y~~~~-------~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l 52 (213)
T cd03279 5 KLELKNFG-PFREEQ-------VIDFTGLDNNGLFLICGPTGAGKSTILDAITYAL 52 (213)
T ss_pred EEEEECCc-CcCCce-------EEeCCCCCccCEEEEECCCCCCHHHHHHHheeeE
Confidence 48889988 665532 5667654 58999999999999999999999644
No 389
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=99.19 E-value=1.2e-11 Score=106.31 Aligned_cols=124 Identities=30% Similarity=0.462 Sum_probs=100.5
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCC-c-e-EecCCC-------HHHHHhhcCCCcccCcchhhhHHHHHHc
Q 027060 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-A-S-SFDSQD-------PKEAHARRGAPWTFNPLLLLNCLKNLRN 174 (229)
Q Consensus 105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~-G-~-~~~g~~-------~~~~~~~~~~~~~~~~~~~~tv~e~l~~ 174 (229)
...-+|||.|+-|+||||+.+.+.-++....... - . ..+|.- ......++|.|..|+...++..+..+..
T Consensus 80 ~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPeSyD~~~ll~fl~~vK~ 159 (283)
T COG1072 80 QRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPESYDVAALLRFLSDVKA 159 (283)
T ss_pred CCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhhccccccCCCCccccHHHHHHHHHHHhc
Confidence 3456799999999999999999999986421111 1 1 344541 2234667899999999988888888886
Q ss_pred ccc-ccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhhh
Q 027060 175 QGS-VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 228 (229)
Q Consensus 175 ~~~-~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~~ 228 (229)
+.. +..|.|++...+.++.+..+..+++|||+|++++++|+++|..+-+++|..
T Consensus 160 ~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfS 214 (283)
T COG1072 160 GKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFS 214 (283)
T ss_pred CCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCCccccccccceEE
Confidence 655 788999999999999999999999999999999999999998888888764
No 390
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.19 E-value=2.2e-11 Score=113.34 Aligned_cols=61 Identities=16% Similarity=0.117 Sum_probs=53.0
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~ 140 (229)
.++|++++|+..-+.. .. .+++++||+|+.|+-+.|.||||||||+|+|+|.|+-+ ..+|.
T Consensus 431 Dn~i~~e~v~l~tPt~-g~-~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp---~~~G~ 491 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPTN-GD-LLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWP---STGGK 491 (659)
T ss_pred cceEEeeeeeecCCCC-Cc-eeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccc---cCCCe
Confidence 4689999999988763 22 36789999999999999999999999999999999987 67785
No 391
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.15 E-value=3.7e-11 Score=109.47 Aligned_cols=58 Identities=22% Similarity=0.406 Sum_probs=47.6
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~ 140 (229)
..+++-.++.|.|++.. |+-=.=+|..||++|++||||-|||||.++|+|.++ |++|.
T Consensus 340 ~~lv~y~~~~k~~g~F~-----L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik---Pdeg~ 397 (591)
T COG1245 340 DTLVEYPDLKKTYGDFK-----LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK---PDEGS 397 (591)
T ss_pred ceeeecchheeecCceE-----EEecCCeeecceEEEEECCCCcchHHHHHHHhcccc---CCCCC
Confidence 34677778888888753 333345677899999999999999999999999999 99985
No 392
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.14 E-value=5e-11 Score=99.22 Aligned_cols=109 Identities=10% Similarity=0.064 Sum_probs=65.8
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCceEecCCCHHHHHhhcCCCcccCcchhhhHHHHHHcc
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ 175 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~ 175 (229)
+++|++++. |++++|+||||||||||+|+|+|... ....|..+.... . ..+....+..+++.||+.++
T Consensus 16 v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~--l~~~G~~v~a~~-------~-~~q~~~l~~~~~~~d~l~~~ 83 (199)
T cd03283 16 VANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI--LAQAGAPVCASS-------F-ELPPVKIFTSIRVSDDLRDG 83 (199)
T ss_pred ecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH--HHHcCCEEecCc-------c-CcccceEEEeccchhccccc
Confidence 666776665 69999999999999999999999763 012343332211 1 11122223347888888775
Q ss_pred ccccCCCCCCCCCCchhhhhhccC--CccEEEecCCeeeecccCHHHH
Q 027060 176 GSVYAPSFDHGVGDPVEDDILVGL--QHKVVIVDGNYLFLDGGVWKDV 221 (229)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~--~~rvLi~d~~~LlLDEP~~~~l 221 (229)
...+ .... .+....+.... .++++++||++-.+|......+
T Consensus 84 ~s~~----~~e~-~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l 126 (199)
T cd03283 84 ISYF----YAEL-RRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAA 126 (199)
T ss_pred cChH----HHHH-HHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHH
Confidence 4321 1111 23333333333 6777888888888887666544
No 393
>PLN02796 D-glycerate 3-kinase
Probab=99.10 E-value=1.7e-10 Score=103.04 Aligned_cols=118 Identities=25% Similarity=0.295 Sum_probs=81.8
Q ss_pred cccceeeee---cCCcE-----EEEEcCCCCcHHHHHHHHHHHhcccCCC---Cce-EecCCCHHH--------------
Q 027060 96 PTSALASNV---NVKHI-----VGLAGPPGAGKSTLAAEVVRRINKIWPQ---KAS-SFDSQDPKE-------------- 149 (229)
Q Consensus 96 ~l~~isl~i---~~Ge~-----v~IiGpNGsGKSTLlk~L~gll~~~~p~---~G~-~~~g~~~~~-------------- 149 (229)
+++++++.+ ++|+. +||+|++|||||||++.|.+++. +. .|. .++|.....
T Consensus 81 il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~---~~g~~~g~IsiDdfYLt~~e~~~L~~q~P~n~ 157 (347)
T PLN02796 81 CEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFN---ATGRRAASLSIDDFYLTAADQAKLAEANPGNA 157 (347)
T ss_pred HHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhc---ccCCceeEEEECCcccchhhHHHHHhhCcchh
Confidence 677888887 56665 99999999999999999999998 54 344 677653211
Q ss_pred HHhhcCCCcccCcchhhhHHHHHH----ccccccCCCCCCCC----CCchhhhh--hccCCccEEEecCCeeeeccc
Q 027060 150 AHARRGAPWTFNPLLLLNCLKNLR----NQGSVYAPSFDHGV----GDPVEDDI--LVGLQHKVVIVDGNYLFLDGG 216 (229)
Q Consensus 150 ~~~~~~~~~~~~~~~~~tv~e~l~----~~~~~~~~~~~~~~----~~~~~~~l--~~~~~~rvLi~d~~~LlLDEP 216 (229)
....+|.+..++...+...++.|. .+..+..|.||+.. ++|....- .+....+|+|+|+++++.-..
T Consensus 158 Ll~~RG~PgThDl~Ll~e~L~~L~~~~~~g~~v~iP~yDks~~~g~gDR~~~~~w~~v~~p~dVII~EGw~vG~~p~ 234 (347)
T PLN02796 158 LLELRGNAGSHDLALGVETLEALRKLNKEGSKMKVPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFEGWMLGFKPL 234 (347)
T ss_pred hhhcCCCCchhHHHHHHHHHHHHHhhhcCCCceecCCCCccccCCCCCCcCcccceEecCCCCEEEEcCcccCCCCC
Confidence 112234555666655566666666 45567788998766 44544322 233578999999999998553
No 394
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.09 E-value=3.7e-10 Score=104.90 Aligned_cols=91 Identities=19% Similarity=0.254 Sum_probs=70.9
Q ss_pred CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH----
Q 027060 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK---- 148 (229)
Q Consensus 74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~---- 148 (229)
+.+++++++++..- .++|+||++.+||++||.|-=|||+|-|+++|.|..+ +.+|+ .++|+.+.
T Consensus 260 ~~~~l~v~~l~~~~--------~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~---~~~G~i~l~G~~v~~~sp 328 (500)
T COG1129 260 GEPVLEVRNLSGGG--------KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP---ASSGEILLDGKPVRIRSP 328 (500)
T ss_pred CCcEEEEecCCCCC--------ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc---CCCceEEECCEEccCCCH
Confidence 45678898887432 3679999999999999999999999999999999888 88997 99998532
Q ss_pred HHHhhcCCCcccCcch------hhhHHHHHHcc
Q 027060 149 EAHARRGAPWTFNPLL------LLNCLKNLRNQ 175 (229)
Q Consensus 149 ~~~~~~~~~~~~~~~~------~~tv~e~l~~~ 175 (229)
....+.|+.+.+.+.. .+++.+|+.+.
T Consensus 329 ~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~ 361 (500)
T COG1129 329 RDAIKAGIAYVPEDRKSEGLVLDMSIAENITLA 361 (500)
T ss_pred HHHHHcCCEeCCcccccCcCcCCCcHHHheehH
Confidence 2234457766665442 27888888765
No 395
>PRK05439 pantothenate kinase; Provisional
Probab=99.04 E-value=2.7e-10 Score=100.70 Aligned_cols=124 Identities=26% Similarity=0.302 Sum_probs=89.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccc--CCCCce-EecCCC--HHH-----HHhhcCCCcccCcchhhhHHHHHHcc
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQD--PKE-----AHARRGAPWTFNPLLLLNCLKNLRNQ 175 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~~~--~p~~G~-~~~g~~--~~~-----~~~~~~~~~~~~~~~~~tv~e~l~~~ 175 (229)
..-+|||.|++|||||||.+.|..++... .+..+. ..+|.- ... ...+.|.+..++...+...+..+..+
T Consensus 85 ~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg~Pes~D~~~l~~~L~~Lk~G 164 (311)
T PRK05439 85 VPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKGFPESYDMRALLRFLSDVKSG 164 (311)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccCCCcccccHHHHHHHHHHHHcC
Confidence 34589999999999999999999987511 011122 445431 111 12245677777777778889999888
Q ss_pred cc-ccCCCCCCCCCCchhhhhhccCCccEEEecCCeee-eccc-CHHHHHHHHhhhC
Q 027060 176 GS-VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLF-LDGG-VWKDVSSMFDEKW 229 (229)
Q Consensus 176 ~~-~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~Ll-LDEP-~~~~l~~~l~~~~ 229 (229)
.. +..|.|++...+...........++|+|+|+.+++ .+++ .|..+++++|.+|
T Consensus 165 ~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D~~I 221 (311)
T PRK05439 165 KPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFDFSI 221 (311)
T ss_pred CCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchhhHHhCCEEE
Confidence 76 88899998888876555555568899999998877 5555 7889999988764
No 396
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.03 E-value=4e-10 Score=93.96 Aligned_cols=107 Identities=26% Similarity=0.403 Sum_probs=62.8
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCC-ce-EecCC--CHH--HHHhhcCCCc----ccCcchhhhHHHHHHc
Q 027060 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-AS-SFDSQ--DPK--EAHARRGAPW----TFNPLLLLNCLKNLRN 174 (229)
Q Consensus 105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~-G~-~~~g~--~~~--~~~~~~~~~~----~~~~~~~~tv~e~l~~ 174 (229)
++|++++|+|+||||||||++.|+++++ +.. +. ..++. ... ....+.++.+ .++...+...++.+..
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~---~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 80 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG---KLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHLKNLKN 80 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc---ccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHHHHHHC
Confidence 5899999999999999999999999987 522 22 22221 001 1112222221 1122222444555555
Q ss_pred cccccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecc
Q 027060 175 QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 215 (229)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDE 215 (229)
+.....+.|+.....+...... .....++|+|+.++++++
T Consensus 81 g~~v~~p~yd~~~~~~~~~~~~-~~~~~~vIieG~~~~~~~ 120 (207)
T TIGR00235 81 GSPIDVPVYDYVNHTRPKETVH-IEPKDVVILEGIMPLFDE 120 (207)
T ss_pred CCCEecccceeecCCCCCceEE-eCCCCEEEEEehhhhchH
Confidence 6666777777655544332222 245678999988777654
No 397
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.02 E-value=4.7e-10 Score=97.12 Aligned_cols=32 Identities=19% Similarity=0.391 Sum_probs=30.3
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHHHHH
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEV 127 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L 127 (229)
.|+|++++|+.|.+++|.|++|||||||++.+
T Consensus 10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~ 41 (261)
T cd03271 10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDT 41 (261)
T ss_pred cCCCceeeccCCcEEEEECCCCCchHHHHHHH
Confidence 58899999999999999999999999999866
No 398
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.01 E-value=3.3e-09 Score=97.47 Aligned_cols=98 Identities=19% Similarity=0.201 Sum_probs=79.8
Q ss_pred CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCH-----
Q 027060 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDP----- 147 (229)
Q Consensus 74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~----- 147 (229)
+.+++++++|+..-... +..+++|||+|.+|||+||.|-.|-|-+.|+.+|+|+.+ +.+|. .++|+++
T Consensus 254 g~~vL~V~~L~v~~~~~---~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~---~~~G~I~l~G~~v~~~~~ 327 (501)
T COG3845 254 GEVVLEVEDLSVKDRRG---VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK---PASGRILLNGKDVLGRLS 327 (501)
T ss_pred CCeEEEEeeeEeecCCC---CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCc---cCCceEEECCEeccccCC
Confidence 56799999999765432 337889999999999999999999999999999999998 88896 8999875
Q ss_pred HHHHhhcCCCcccCcch------hhhHHHHHHcccc
Q 027060 148 KEAHARRGAPWTFNPLL------LLNCLKNLRNQGS 177 (229)
Q Consensus 148 ~~~~~~~~~~~~~~~~~------~~tv~e~l~~~~~ 177 (229)
...+++.|+.+.+.+.. -+++.||+.+...
T Consensus 328 ~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~ 363 (501)
T COG3845 328 PRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRH 363 (501)
T ss_pred HHHHHhcCCccCChhhccCccccCccHHHHhhhhhc
Confidence 23455678877776652 2899999987544
No 399
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.01 E-value=1e-09 Score=91.28 Aligned_cols=127 Identities=13% Similarity=0.105 Sum_probs=68.9
Q ss_pred ccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCceEecCCCHHHHHhh----cCCCcccCc------ch--
Q 027060 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHAR----RGAPWTFNP------LL-- 164 (229)
Q Consensus 97 l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~g~~~~~~~~~----~~~~~~~~~------~~-- 164 (229)
++++++++.+| +.+|+||||||||||+..|...+. ........|......... ..+...|+. ..
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~---~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG---GKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCV 87 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc---CCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCH
Confidence 44667777776 889999999999999999986554 322212223221111000 001111111 00
Q ss_pred h--hhHHHHHHcccccc--CCCCCCCCCCchhhhhhc----cCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 165 L--LNCLKNLRNQGSVY--APSFDHGVGDPVEDDILV----GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 165 ~--~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~l~~----~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
. ..+.+.+....... ...++.++.+++....++ ...++++++|+++..||......+.+++..
T Consensus 88 ~~~~~~~~~l~~~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~ 158 (198)
T cd03276 88 LSQDMARSFLTSNKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVK 158 (198)
T ss_pred HHHHHHHHHhccccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHH
Confidence 0 12223333311111 123445555555555544 467888888888888888777777776654
No 400
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.98 E-value=2.3e-10 Score=95.13 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=29.1
Q ss_pred ceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 99 ~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll 131 (229)
..++++..|++++|+||||||||||+++|++..
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~ 53 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAV 53 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHH
Confidence 567777899999999999999999999999543
No 401
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.98 E-value=2.9e-10 Score=105.18 Aligned_cols=57 Identities=16% Similarity=0.101 Sum_probs=47.2
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~ 140 (229)
|.++|+-..-+... + ++..++|.|++|--+.|+||||||||+|+|+|.|+-+ ...|.
T Consensus 482 I~lenIpvItP~~~--v-vv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWP---vy~g~ 538 (728)
T KOG0064|consen 482 IILENIPVITPAGD--V-LVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWP---VYNGL 538 (728)
T ss_pred eEEecCceeccCcc--e-eecceeEEecCCceEEEECCCCccHHHHHHHHhccCc---ccCCe
Confidence 77888876665432 2 6789999999999999999999999999999999876 55554
No 402
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.97 E-value=1.8e-09 Score=92.66 Aligned_cols=30 Identities=17% Similarity=0.294 Sum_probs=26.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc
Q 027060 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (229)
Q Consensus 107 Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G 139 (229)
..+++|+||||||||||+++|++++. +..+
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~---~~~~ 54 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLG---ITNL 54 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---cccc
Confidence 56999999999999999999999997 6543
No 403
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.96 E-value=1.3e-09 Score=102.98 Aligned_cols=110 Identities=24% Similarity=0.355 Sum_probs=72.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhcCCCcccCcc---hhhhH---HHHHHcccccc
Q 027060 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARRGAPWTFNPL---LLLNC---LKNLRNQGSVY 179 (229)
Q Consensus 107 Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~~~~~~~~~~---~~~tv---~e~l~~~~~~~ 179 (229)
--+|||.||||||||||++.|.++++ ..|. .++|...... ..+ ..++.+ .+..+ ++.|..+..+.
T Consensus 65 riIIGIaGpSGSGKTTLAk~LaglLp----~vgvIsmDdy~~~~~--~i~--~nfD~P~a~D~d~L~enL~~Lr~GksV~ 136 (656)
T PLN02318 65 IILVGVAGPSGAGKTVFTEKVLNFMP----SIAVISMDNYNDSSR--IID--GNFDDPRLTDYDTLLDNIHDLKAGKSVQ 136 (656)
T ss_pred eEEEEEECCCCCcHHHHHHHHHhhCC----CcEEEEEcceecchh--hhC--ccCCChhhcchhHHHHHHHHHhCCCcee
Confidence 35899999999999999999999864 5675 7777642111 111 222222 22334 44455566677
Q ss_pred CCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhhhC
Q 027060 180 APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 229 (229)
Q Consensus 180 ~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~~~ 229 (229)
.|.||+..+.+...........+|+|+|+.+++.+ ++++++|.+|
T Consensus 137 iPiYDf~t~~r~~~~~i~v~p~~VVIVEGIyaL~~-----~Lr~LlDlkI 181 (656)
T PLN02318 137 VPIYDFKSSSRVGYRTLEVPSSRIVIIEGIYALSE-----KLRPLLDLRV 181 (656)
T ss_pred cCccccccCcccCCceeecCCCcEEEEechhhccH-----hHHhhCCEEE
Confidence 88888877665433233345788999999999853 5777777653
No 404
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.96 E-value=4.6e-10 Score=93.19 Aligned_cols=32 Identities=16% Similarity=0.311 Sum_probs=29.4
Q ss_pred ccceeeeecCCc-EEEEEcCCCCcHHHHHHHHH
Q 027060 97 TSALASNVNVKH-IVGLAGPPGAGKSTLAAEVV 128 (229)
Q Consensus 97 l~~isl~i~~Ge-~v~IiGpNGsGKSTLlk~L~ 128 (229)
+-++||++.+|+ +++|.||||||||||+|+|.
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHH
Confidence 348999999996 79999999999999999998
No 405
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.93 E-value=5.1e-10 Score=103.36 Aligned_cols=46 Identities=17% Similarity=0.247 Sum_probs=41.1
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc-e-EecCCC
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-S-SFDSQD 146 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G-~-~~~g~~ 146 (229)
+|++||++|.+||+++|+|||||||||||+ .|+.. |++| . .++|.+
T Consensus 21 vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~---~~sGg~I~ldg~~ 68 (504)
T TIGR03238 21 ILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRK---FSEGYEFFLDATH 68 (504)
T ss_pred HHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCC---CCCCCEEEECCEE
Confidence 789999999999999999999999999999 67777 7777 4 788864
No 406
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.92 E-value=2.4e-09 Score=96.95 Aligned_cols=128 Identities=18% Similarity=0.206 Sum_probs=78.2
Q ss_pred ccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhccc-----CCCCce-EecCCCHHHHHhhcCCCcccCcchhhhH
Q 027060 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI-----WPQKAS-SFDSQDPKEAHARRGAPWTFNPLLLLNC 168 (229)
Q Consensus 95 ~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~-----~p~~G~-~~~g~~~~~~~~~~~~~~~~~~~~~~tv 168 (229)
.+++|+||+|++|++++|+|++|+||||||++|+|..... -|++|. .+--..+ .......+-..|. -.++
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~-~a~iPge~Ep~f~---~~ti 472 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV-SALIPGEYEPEFG---EVTI 472 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccch-hhccCcccccccC---chhH
Confidence 3789999999999999999999999999999999986421 166664 2211111 0000000111111 1122
Q ss_pred HHHHH-----------------ccc-cccC---CCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHh
Q 027060 169 LKNLR-----------------NQG-SVYA---PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 226 (229)
Q Consensus 169 ~e~l~-----------------~~~-~~~~---~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~ 226 (229)
++.+. ... .++. ...+.+++.+...+..+...+.+++.|+=...|||-+..++..-+.
T Consensus 473 lehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkis 551 (593)
T COG2401 473 LEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKIS 551 (593)
T ss_pred HHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHH
Confidence 22222 111 1111 1234566777777777778889999999999999987666544433
No 407
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=1.3e-09 Score=100.51 Aligned_cols=62 Identities=18% Similarity=0.191 Sum_probs=55.1
Q ss_pred CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce
Q 027060 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (229)
Q Consensus 74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~ 140 (229)
..|++++.+|++.|+...- ..+.++++++..-..++++|+||+||||++|++.+.+. |..|.
T Consensus 359 ~~p~l~i~~V~f~y~p~~y--~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~---~~rgi 420 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTPSEY--QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT---PTRGI 420 (582)
T ss_pred CCCeeEEEeeeccCCCcch--hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC---cccce
Confidence 3468999999999987532 46789999999999999999999999999999999998 99996
No 408
>PTZ00301 uridine kinase; Provisional
Probab=98.90 E-value=2.6e-09 Score=89.65 Aligned_cols=117 Identities=22% Similarity=0.357 Sum_probs=76.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcc-cCCCCc-e-EecCC-----CHHHH---HhhcCCCcccCcchhhhHHHHHHccc
Q 027060 108 HIVGLAGPPGAGKSTLAAEVVRRINK-IWPQKA-S-SFDSQ-----DPKEA---HARRGAPWTFNPLLLLNCLKNLRNQG 176 (229)
Q Consensus 108 e~v~IiGpNGsGKSTLlk~L~gll~~-~~p~~G-~-~~~g~-----~~~~~---~~~~~~~~~~~~~~~~tv~e~l~~~~ 176 (229)
-+|||.|++|||||||.+.|...+.. ..+... . ..++. ..... ..+.+.+..++...+...+..|.-+.
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l~~L~~g~ 83 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLRELKSGK 83 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHHHHHHcCC
Confidence 57999999999999999988765420 002211 1 11222 11111 12334466666666677778888887
Q ss_pred cccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhhhC
Q 027060 177 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 229 (229)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~~~ 229 (229)
.+..|.|++..+.+......+ ...+|+|+|+.+++.++ ++++++|.+|
T Consensus 84 ~i~~P~yd~~~~~~~~~~~~i-~p~~ViIvEGi~~l~~~----~l~~l~D~~i 131 (210)
T PTZ00301 84 TVQIPQYDYVHHTRSDTAVTM-TPKSVLIVEGILLFTNA----ELRNEMDCLI 131 (210)
T ss_pred cccCCCcccccCCcCCceEEe-CCCcEEEEechhhhCCH----HHHHhCCEEE
Confidence 888899988777665443333 45699999999997775 6777777653
No 409
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.89 E-value=4.2e-09 Score=86.98 Aligned_cols=103 Identities=29% Similarity=0.504 Sum_probs=60.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCCCCceEe--cCC----CHHHHHhhcC----CCcccCcchhhhHHHHHHccccc
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF--DSQ----DPKEAHARRG----APWTFNPLLLLNCLKNLRNQGSV 178 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~~~--~g~----~~~~~~~~~~----~~~~~~~~~~~tv~e~l~~~~~~ 178 (229)
++||+|+||||||||+++|.+++. ......+ ++. .......... .+..++...+...+..+..+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~---~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 77 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG---NPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLKNGKSV 77 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC---CCCeEEEEecccccccccccHHHhccCCCCCCCcccHHHHHHHHHHHHCCCCE
Confidence 589999999999999999999874 2111121 211 1111111111 22222333334566666666666
Q ss_pred cCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecc
Q 027060 179 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 215 (229)
Q Consensus 179 ~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDE 215 (229)
..+.|+...+.+..... ....++++++|+++++.++
T Consensus 78 ~~p~~d~~~~~~~~~~~-~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 78 EIPVYDFKTHSRLKETV-TVYPADVIILEGILALYDK 113 (198)
T ss_pred eccccccccCcccCCce-ecCCCCEEEEechhhccch
Confidence 67777776665543333 2345778888888887764
No 410
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.87 E-value=5.9e-09 Score=86.85 Aligned_cols=107 Identities=24% Similarity=0.379 Sum_probs=64.2
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCceEecCCCH------HHHHhhc----CCCcccCcchhhhHHHHHHc
Q 027060 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDP------KEAHARR----GAPWTFNPLLLLNCLKNLRN 174 (229)
Q Consensus 105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~g~~~------~~~~~~~----~~~~~~~~~~~~tv~e~l~~ 174 (229)
.++.+++|.|+||||||||.+.|.+.+. ...-..+...+. .....+. +.+..++...+...++.+.-
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~---~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 80 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG---DESIAVIPQDSYYKDQSHLSFEERVKTNYDHPDAFDHDLLIEHLKALKA 80 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC---CCceEEEeCCccccCcccCCHHHhcccCccCcccccHHHHHHHHHHHHc
Confidence 4688999999999999999999999884 222112211110 0011111 12233333344566666666
Q ss_pred cccccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecc
Q 027060 175 QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 215 (229)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDE 215 (229)
+..+..+.|+...+.+....... ....++++|+.+++.++
T Consensus 81 ~~~v~~p~~d~~~~~~~~~~~~~-~~~~~vivEg~~l~~~~ 120 (209)
T PRK05480 81 GKAIEIPVYDYTEHTRSKETIRV-EPKDVIILEGILLLEDE 120 (209)
T ss_pred CCccccCcccccccccCCCeEEe-CCCCEEEEEeehhcCch
Confidence 66666777776665554333332 45678999998887653
No 411
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.87 E-value=6.2e-09 Score=90.73 Aligned_cols=111 Identities=22% Similarity=0.286 Sum_probs=67.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCCCCceEecCCCH----HHHHhhcCCCcc-cC---cchhhhHHHHHHccccccC
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDP----KEAHARRGAPWT-FN---PLLLLNCLKNLRNQGSVYA 180 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~g~~~----~~~~~~~~~~~~-~~---~~~~~tv~e~l~~~~~~~~ 180 (229)
++||+|+||||||||++.|++++. +..+..+...+. ...+...++... +. ...+...++.+..+..+..
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~---~~~~~vi~~Dd~~~~~~~~r~~~g~~~~~p~~~~~d~l~~~l~~Lk~g~~i~~ 77 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFG---SDLVTVICLDDYHSLDRKGRKETGITALDPRANNFDLMYEQLKALKEGQAIEK 77 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhC---CCceEEEECcccccCCHHHHHHhhcccccccchhHHHHHHHHHHHHCCCCccc
Confidence 589999999999999999999998 777753333222 111223343211 11 1122455566666666667
Q ss_pred CCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhhh
Q 027060 181 PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 228 (229)
Q Consensus 181 ~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~~ 228 (229)
|.|++..+..... ......+++|+|+.+++.++ .+++++|.+
T Consensus 78 P~y~~~~~~~~~~--~~i~~~~ivIvEG~~~l~~~----~l~~~~D~~ 119 (273)
T cd02026 78 PIYNHVTGLIDPP--ELIKPTKIVVIEGLHPLYDE----RVRELLDFS 119 (273)
T ss_pred ccccccCCCcCCc--EEcCCCCEEEEeeehhhCch----hhhhhccEE
Confidence 7777665542211 11234689999999987764 444454443
No 412
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.86 E-value=1.6e-09 Score=94.21 Aligned_cols=37 Identities=19% Similarity=0.322 Sum_probs=33.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCH
Q 027060 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDP 147 (229)
Q Consensus 108 e~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~ 147 (229)
.-++|+||||||||||+++|+|++. |.+|. .++|+++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~---~~~G~i~~~g~~v 149 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS---TGISQLGLRGKKV 149 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC---CCCceEEECCEEe
Confidence 5689999999999999999999999 99997 8888765
No 413
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.83 E-value=1e-08 Score=86.06 Aligned_cols=116 Identities=28% Similarity=0.409 Sum_probs=83.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce--E----ecCCCHHHH--Hhh--cCCCcccCcchhhhHHHHHHcc
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS--S----FDSQDPKEA--HAR--RGAPWTFNPLLLLNCLKNLRNQ 175 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~--~----~~g~~~~~~--~~~--~~~~~~~~~~~~~tv~e~l~~~ 175 (229)
+.-++||.|++||||||+.+.|.-.+. ...-. . +.+...... +.. ...+..++...+...+.+|..+
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~---~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g 83 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLG---VEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQG 83 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhC---cCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcC
Confidence 346899999999999999999999887 33211 1 222111111 111 1235566666678899999999
Q ss_pred ccccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhhhC
Q 027060 176 GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 229 (229)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~~~ 229 (229)
..+..|.|+...+.+...... ....+|+|+|+-+++.|| ++++++|.++
T Consensus 84 ~~v~~P~yd~~~~~r~~~~i~-~~p~~VVIvEGi~~l~d~----~lr~~~d~kI 132 (218)
T COG0572 84 KPVDLPVYDYKTHTREPETIK-VEPNDVVIVEGILLLYDE----RLRDLMDLKI 132 (218)
T ss_pred CcccccccchhcccccCCccc-cCCCcEEEEecccccccH----HHHhhcCEEE
Confidence 999999999888777653333 357899999999999997 8888887653
No 414
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=98.83 E-value=1.3e-08 Score=92.98 Aligned_cols=108 Identities=20% Similarity=0.289 Sum_probs=71.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccCCC---Cce-EecCCCH--HHH-H-----------hhcCCCcccCcchhhhH
Q 027060 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KAS-SFDSQDP--KEA-H-----------ARRGAPWTFNPLLLLNC 168 (229)
Q Consensus 107 Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~---~G~-~~~g~~~--~~~-~-----------~~~~~~~~~~~~~~~tv 168 (229)
--+|||+|++|||||||++.|.+++. +. .|. .++|... .+. . ..+|.+..++......+
T Consensus 212 PlIIGIsG~qGSGKSTLa~~L~~lL~---~~g~~vgvISiDDfYLt~eer~kL~~~nP~n~LL~~RG~PGTHDv~Lg~e~ 288 (460)
T PLN03046 212 PLVIGFSAPQGCGKTTLVFALDYLFR---VTGRKSATLSIDDFYLTAEGQAELRERNPGNALLELRGNAGSHDLQFSVET 288 (460)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc---ccCCceEEEEECCccCChHHHHHHHhhCccchhhcccCCCccccHhhHHHH
Confidence 37899999999999999999999997 54 444 6777542 111 1 11233445555544555
Q ss_pred HHHH----HccccccCCCCCCCC----CCchhhhhh--ccCCccEEEecCCeeeecccC
Q 027060 169 LKNL----RNQGSVYAPSFDHGV----GDPVEDDIL--VGLQHKVVIVDGNYLFLDGGV 217 (229)
Q Consensus 169 ~e~l----~~~~~~~~~~~~~~~----~~~~~~~l~--~~~~~rvLi~d~~~LlLDEP~ 217 (229)
++.+ ..+..+..|.||+.. +++.....+ +....+|+|+|++++++....
T Consensus 289 L~~L~~~lk~G~~V~iP~YDKs~h~GrgDR~~~~~W~~v~~P~DVIIfEGW~vG~~P~~ 347 (460)
T PLN03046 289 LEALSKLTKEGIKMKVPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWMLGFKPLP 347 (460)
T ss_pred HHHHHHHhhCCCeeecCCCCccccCCCCCCcCcccceeecCCCCEEEEcCHHhCCCCCC
Confidence 5555 346677788898765 446544322 345789999999999986533
No 415
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.81 E-value=5.9e-09 Score=87.13 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=34.6
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+.+|++|++..|++++|+||||+|||||+++|+++.-
T Consensus 18 v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~ 54 (204)
T cd03282 18 IPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI 54 (204)
T ss_pred EEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999998753
No 416
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.81 E-value=1e-09 Score=90.69 Aligned_cols=116 Identities=35% Similarity=0.535 Sum_probs=72.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccc-CC-C--Cce-EecCCCH----HHHHhhc------CCCcccCcchhhhHHHHHH
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRINKI-WP-Q--KAS-SFDSQDP----KEAHARR------GAPWTFNPLLLLNCLKNLR 173 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll~~~-~p-~--~G~-~~~g~~~----~~~~~~~------~~~~~~~~~~~~tv~e~l~ 173 (229)
+|||.|++|||||||.+.|...+... .+ . .+. .+++... ....... ..+..++...+...+..|.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~L~ 80 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKALK 80 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHHHh
Confidence 68999999999999999999999721 01 0 112 2333211 1111111 1233344444566777787
Q ss_pred ccccccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhhhC
Q 027060 174 NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 229 (229)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~~~ 229 (229)
.+..+..|.|++..+..... .......+|+|+|+.++++|+. +++++|.+|
T Consensus 81 ~g~~i~~p~yd~~~~~~~~~-~~~~~~~~ivIvEG~~~l~~~~----l~~l~D~~i 131 (194)
T PF00485_consen 81 NGGSIEIPIYDFSTGDRDPW-IIIISPSDIVIVEGIYALYDEE----LRDLFDLKI 131 (194)
T ss_dssp TTSCEEEEEEETTTTEEEEE-EEEEES-SEEEEEETTTTSSHC----HGGG-SEEE
T ss_pred CCCcccccccccccccceee-eeecCCCCEEEEcccceeeeee----ecccceeEE
Confidence 78888888888877666542 2234578999999999999985 666666543
No 417
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.80 E-value=1.2e-08 Score=101.80 Aligned_cols=44 Identities=20% Similarity=0.334 Sum_probs=38.1
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHH
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVV 128 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~ 128 (229)
+.|++++++. . .|++++++|++|+++||+|+||||||||++.+.
T Consensus 613 ~~L~v~~l~~-----~----~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l 656 (943)
T PRK00349 613 KFLKLKGARE-----N----NLKNVDVEIPLGKFTCVTGVSGSGKSTLINETL 656 (943)
T ss_pred ceEEecCCcc-----C----CcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHH
Confidence 4688888861 1 578999999999999999999999999998764
No 418
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=7.2e-09 Score=94.50 Aligned_cols=50 Identities=22% Similarity=0.267 Sum_probs=44.1
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHH
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gl 130 (229)
-|.++|.+.+-.+.. .+.+.|+.|-.|..+|||||||-||||||+.|+.-
T Consensus 264 DIKiEnF~ISA~Gk~----LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~R 313 (807)
T KOG0066|consen 264 DIKIENFDISAQGKL----LFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAAR 313 (807)
T ss_pred cceeeeeeeecccce----eeeccceEEEecceecccCCCCCchHHHHHHHHhh
Confidence 388899888876654 67799999999999999999999999999999874
No 419
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.80 E-value=1.1e-08 Score=87.67 Aligned_cols=44 Identities=20% Similarity=0.317 Sum_probs=33.4
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
|+++|. +.|.+.. ++...++ +++|+||||||||||+.+|.+++.
T Consensus 4 i~l~nf-~~~~~~~---------~~~~~~~-~~~i~G~NGsGKStll~ai~~~l~ 47 (247)
T cd03275 4 LELENF-KSYKGRH---------VIGPFDR-FTCIIGPNGSGKSNLMDAISFVLG 47 (247)
T ss_pred EEEECc-cccCCCe---------eecCCCC-eEEEECCCCCCHHHHHHHHHHHhC
Confidence 677776 5675421 1222344 999999999999999999999986
No 420
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.65 E-value=3.3e-08 Score=98.61 Aligned_cols=40 Identities=20% Similarity=0.320 Sum_probs=36.1
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHH
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAA 125 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk 125 (229)
.|+++|++. . .|++++|+|++|++++|+|+||||||||++
T Consensus 612 ~l~l~~~~~-----~----~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~ 651 (924)
T TIGR00630 612 FLTLKGARE-----N----NLKNITVSIPLGLFTCITGVSGSGKSTLIN 651 (924)
T ss_pred eEEEEeCcc-----C----CcCceEEEEeCCCEEEEECCCCCCHHHHHH
Confidence 689999862 1 588999999999999999999999999998
No 421
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.65 E-value=1.6e-08 Score=85.23 Aligned_cols=70 Identities=17% Similarity=0.090 Sum_probs=46.1
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCceEecCCCHHHHHhhcCCCcccCcchhhhHHHHHHcc
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ 175 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~ 175 (229)
+.+++++++.+ ++++|+||||+|||||+|+|++..- ....|..+... ...+++..+.+..+++.+++..+
T Consensus 20 v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~--l~~~g~~vp~~-------~~~i~~~~~i~~~~~~~~~ls~g 89 (216)
T cd03284 20 VPNDTELDPER-QILLITGPNMAGKSTYLRQVALIAL--LAQIGSFVPAS-------KAEIGVVDRIFTRIGASDDLAGG 89 (216)
T ss_pred EeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHH--HhccCCeeccc-------cceecceeeEeccCCchhhhccC
Confidence 67899999887 9999999999999999999987653 02334322211 11223333334446777777655
No 422
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.64 E-value=1.9e-08 Score=101.49 Aligned_cols=124 Identities=18% Similarity=0.286 Sum_probs=86.5
Q ss_pred cccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc-eEecCCCHHHHHhhcCC---CcccCcchhhhHH
Q 027060 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQDPKEAHARRGA---PWTFNPLLLLNCL 169 (229)
Q Consensus 94 ~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G-~~~~g~~~~~~~~~~~~---~~~~~~~~~~tv~ 169 (229)
+.+++|++.-+++|+.+.++||.|||||||++.|+|.+.......| ..++|.+..+...+..+ ++..-..+.+||+
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 4589999999999999999999999999999999998764323345 48999876554332222 3444444558898
Q ss_pred HHHHccccccCCC--CC--------------------------CCCCCchhhhhhccCCccE-----EEecCCeeeeccc
Q 027060 170 KNLRNQGSVYAPS--FD--------------------------HGVGDPVEDDILVGLQHKV-----VIVDGNYLFLDGG 216 (229)
Q Consensus 170 e~l~~~~~~~~~~--~~--------------------------~~~~~~~~~~l~~~~~~rv-----Li~d~~~LlLDEP 216 (229)
|-+.+..+...+. ++ .-.++.....++.|++.|| ++..+.++.+||+
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~ 287 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEI 287 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecc
Confidence 8888876554431 11 1123333344666777777 7777888888887
Q ss_pred C
Q 027060 217 V 217 (229)
Q Consensus 217 ~ 217 (229)
+
T Consensus 288 t 288 (1391)
T KOG0065|consen 288 T 288 (1391)
T ss_pred c
Confidence 4
No 423
>PRK07429 phosphoribulokinase; Provisional
Probab=98.64 E-value=6.9e-08 Score=86.20 Aligned_cols=112 Identities=21% Similarity=0.317 Sum_probs=67.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce--EecCCC-H-HHHHhhcCC-CcccC---cchhhhHHHHHHcccccc
Q 027060 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS--SFDSQD-P-KEAHARRGA-PWTFN---PLLLLNCLKNLRNQGSVY 179 (229)
Q Consensus 108 e~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~--~~~g~~-~-~~~~~~~~~-~~~~~---~~~~~tv~e~l~~~~~~~ 179 (229)
-++||.|+||||||||++.|.+++. +..+. ..++.- . ...+...+. +..+. ...+...++.+..+..+.
T Consensus 9 ~IIgI~G~SGSGKSTla~~L~~ll~---~~~~~vi~~Dd~~~~~~~~r~~~g~~~l~p~~~~~d~l~~~l~~L~~g~~I~ 85 (327)
T PRK07429 9 VLLGVAGDSGCGKTTFLRGLADLLG---EELVTVICTDDYHSYDRKQRKELGITALDPRANNLDIMYEHLKALKTGQPIL 85 (327)
T ss_pred EEEEEECCCCCCHHHHHHHHHhHhc---cCceEEEEecccccCCHHHHHhcCCcccCccchHHHHHHHHHHHHHCCCcee
Confidence 4899999999999999999999998 77653 333321 1 111222332 11111 112244555666666666
Q ss_pred CCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhhh
Q 027060 180 APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 228 (229)
Q Consensus 180 ~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~~ 228 (229)
.|.|++..+..... . .....+++|+|+.+.++++ .+++++|.+
T Consensus 86 ~P~yd~~~g~~~~~-~-~i~p~~iVIvEG~~~l~~~----~lr~~~D~~ 128 (327)
T PRK07429 86 KPIYNHETGTFDPP-E-YIEPNKIVVVEGLHPLYDE----RVRELYDFK 128 (327)
T ss_pred cceeecCCCCcCCc-E-ecCCCcEEEEechhhcCcH----hHHhhCCEE
Confidence 67777665543221 1 1234689999999877776 455555554
No 424
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.64 E-value=2e-08 Score=82.48 Aligned_cols=45 Identities=22% Similarity=0.372 Sum_probs=38.9
Q ss_pred ccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecC
Q 027060 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS 144 (229)
Q Consensus 97 l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g 144 (229)
.+-+.+.+.+|+.++|+||||||||||+++|+++++ ++.|. .+.+
T Consensus 15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~---~~~~~i~ied 60 (186)
T cd01130 15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIP---PDERIITIED 60 (186)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC---CCCCEEEECC
Confidence 334567889999999999999999999999999998 88886 6644
No 425
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.62 E-value=2.2e-08 Score=84.82 Aligned_cols=48 Identities=19% Similarity=0.137 Sum_probs=42.3
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHH-HhcccCCCCceEecCCC
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR-RINKIWPQKASSFDSQD 146 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~g-ll~~~~p~~G~~~~g~~ 146 (229)
+.+|+++.+.+|++++|.||||+|||||+++|++ .+. +..|..+.+..
T Consensus 20 v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~l---a~~G~~v~a~~ 68 (222)
T cd03287 20 VPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIM---AQIGSFVPASS 68 (222)
T ss_pred EEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHH---HhCCCEEEcCc
Confidence 6789999999999999999999999999999999 566 78887665543
No 426
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.62 E-value=8.7e-08 Score=100.39 Aligned_cols=41 Identities=17% Similarity=0.248 Sum_probs=36.2
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHH
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAA 125 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk 125 (229)
..|++++++. . .|+++||+|++||+++|.|+||||||||++
T Consensus 599 ~~L~l~~~~~-----~----~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~ 639 (1809)
T PRK00635 599 GTLTLSKATK-----H----NLKDLTISLPLGRLTVVTGVSGSGKSSLIN 639 (1809)
T ss_pred CeEEEecccc-----C----CccceEEEEcCCcEEEEEcCCCCCHHHHHH
Confidence 3688888862 1 588999999999999999999999999999
No 427
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.58 E-value=2.4e-08 Score=84.44 Aligned_cols=34 Identities=18% Similarity=0.207 Sum_probs=32.0
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHH
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~g 129 (229)
+.+|+++++.++++++|.||||+|||||+++|+-
T Consensus 19 v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~ 52 (222)
T cd03285 19 IPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV 52 (222)
T ss_pred EEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH
Confidence 6789999999999999999999999999999874
No 428
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.58 E-value=7.6e-08 Score=88.88 Aligned_cols=62 Identities=16% Similarity=0.156 Sum_probs=52.6
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-Eec
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFD 143 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~ 143 (229)
.+.++.+++++.|... +.+++.++ .|.+|++++|+|+||||||||+++|+++.. |+.|. .+.
T Consensus 137 p~~~~r~~v~~~l~TG---i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~li 199 (450)
T PRK06002 137 PPAMTRARVETGLRTG---VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALV 199 (450)
T ss_pred CCCeEeecceEEcCCC---cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeec
Confidence 3468999999999653 23677775 899999999999999999999999999998 99886 443
No 429
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.56 E-value=1e-07 Score=89.57 Aligned_cols=61 Identities=21% Similarity=0.293 Sum_probs=53.0
Q ss_pred EeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCH
Q 027060 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDP 147 (229)
Q Consensus 80 ~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~ 147 (229)
+.|+++.|+... +++++++.+..|+.++|+|+||+|||||++.|.|+++ |.+|. .+....+
T Consensus 187 ~~d~~~v~Gq~~----~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllp---p~~g~e~le~~~i 248 (506)
T PRK09862 187 QHDLSDVIGQEQ----GKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLP---DLSNEEALESAAI 248 (506)
T ss_pred ccCeEEEECcHH----HHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCC---CCCCcEEEecchh
Confidence 358888898765 7889999999999999999999999999999999999 99996 6655443
No 430
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.54 E-value=2.9e-07 Score=75.14 Aligned_cols=64 Identities=22% Similarity=0.281 Sum_probs=44.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCceEecCCCHHH----HHhhcCCCcccC-cchhhhHHHHHHcc
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKE----AHARRGAPWTFN-PLLLLNCLKNLRNQ 175 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~g~~~~~----~~~~~~~~~~~~-~~~~~tv~e~l~~~ 175 (229)
+|++++|+|+||||||||+++|++++. + ..++|.++.. .....++++..+ ...+.++..++.+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~---~---~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 70 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFS---A---KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYS 70 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC---C---EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHH
Confidence 699999999999999999999999987 5 3566654321 122356655443 23456666666543
No 431
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.53 E-value=1.8e-07 Score=63.43 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=29.9
Q ss_pred ccceeeeecC-CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 97 TSALASNVNV-KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 97 l~~isl~i~~-Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+++..+++.+ |+++.|.|+||||||||+.+|.-++-
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 3455677765 57999999999999999999988776
No 432
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.53 E-value=7.4e-08 Score=77.37 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=30.0
Q ss_pred ceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc
Q 027060 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (229)
Q Consensus 99 ~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G 139 (229)
..++.+..+.++.|+|||||||||+++.+...+- ...+
T Consensus 13 ~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~---~~~~ 50 (162)
T cd03227 13 PNDVTFGEGSLTIITGPNGSGKSTILDAIGLALG---GAQS 50 (162)
T ss_pred ccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHH---hcch
Confidence 3455555667999999999999999999887765 5544
No 433
>PLN02348 phosphoribulokinase
Probab=98.52 E-value=1.5e-07 Score=85.45 Aligned_cols=115 Identities=22% Similarity=0.352 Sum_probs=70.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccC--C------------CCce--EecCCCH--HHHHhhcCC----CcccCcch
Q 027060 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIW--P------------QKAS--SFDSQDP--KEAHARRGA----PWTFNPLL 164 (229)
Q Consensus 107 Ge~v~IiGpNGsGKSTLlk~L~gll~~~~--p------------~~G~--~~~g~~~--~~~~~~~~~----~~~~~~~~ 164 (229)
--+|||.|++|||||||.+.|...+.... + +... ..++.-. ...+...++ +..++...
T Consensus 49 p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~~~g~t~ldP~a~dfDl 128 (395)
T PLN02348 49 TVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDL 128 (395)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHhhcCCccCCcccccHHH
Confidence 45899999999999999999999885110 0 1111 2333311 111122232 11222223
Q ss_pred hhhHHHHHHccccccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 165 LLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 165 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+...++.|..+..+..|.|++..+...... .....+++|+|+.++++|+ .+++++|.
T Consensus 129 l~~~L~~Lk~G~~I~~PiYDh~tg~~~~~e--~I~p~~VVIVEGlh~L~~e----~lr~l~D~ 185 (395)
T PLN02348 129 MYEQVKALKEGKAVEKPIYNHVTGLLDPPE--LIEPPKILVIEGLHPMYDE----RVRDLLDF 185 (395)
T ss_pred HHHHHHHHHCCCcEEeeccccCCCCcCCcE--EcCCCcEEEEechhhccCc----cccccCcE
Confidence 466777777777888889988776543322 2346899999999999987 44444444
No 434
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.50 E-value=2.7e-07 Score=76.12 Aligned_cols=114 Identities=23% Similarity=0.283 Sum_probs=64.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCCCCceEecCC----C-HHHH---HhhcCCCcccCcchhhhHHHHHHccccccC
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ----D-PKEA---HARRGAPWTFNPLLLLNCLKNLRNQGSVYA 180 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~g~----~-~~~~---~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~ 180 (229)
+++|.|++|||||||.+.|...+. ...-...++. + .... ..+.+.+..++...+...+..+..+.....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~---~~~~i~~Ddf~~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~L~~l~~~~~~~~ 77 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP---NCCVIHQDDFFKPEDEIPVDENGFKQWDVLEALDMEAMMSTLDYWRETGHFPK 77 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC---CCeEEccccccCCcccCChHhhcCCCCCCcccccHHHHHHHHHHHHcCCCccC
Confidence 589999999999999999999764 1110112221 1 1111 112233555555555667777776554332
Q ss_pred CCCCCCCCCc-------------hhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhhhC
Q 027060 181 PSFDHGVGDP-------------VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 229 (229)
Q Consensus 181 ~~~~~~~~~~-------------~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~~~ 229 (229)
+.++...... ...........+++|+|+.+++.|+ .+++++|.+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~----~l~~l~D~~I 135 (187)
T cd02024 78 FLRSHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYK----PLVDLFDIRY 135 (187)
T ss_pred cccCccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCH----HHHhhcCcee
Confidence 3222221111 1112234456789999999988876 5667777654
No 435
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.49 E-value=5.3e-07 Score=82.17 Aligned_cols=53 Identities=21% Similarity=0.262 Sum_probs=47.5
Q ss_pred eEEEeeeeEEcCcccccccccc-----------ceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 77 VVEARCMDEVYDALAQRLLPTS-----------ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~-----------~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
-++++||++.|++.. .+|+ |+.+.|.+|++++|+||.|+|||||++.|...+.
T Consensus 130 ri~Fe~LTf~YP~er---~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 130 RVLFENLTPLYPNER---LRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CeEEEEeeecCCCcc---ceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 599999999998642 3675 9999999999999999999999999999999875
No 436
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.48 E-value=2.3e-07 Score=78.03 Aligned_cols=34 Identities=18% Similarity=0.332 Sum_probs=26.9
Q ss_pred cceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 98 ~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+++.+++.+| +.+|+|+||+||||||..|.-.+.
T Consensus 15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~ 48 (213)
T cd03277 15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLG 48 (213)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhc
Confidence 3455565554 778999999999999999987764
No 437
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=98.48 E-value=9.1e-08 Score=78.27 Aligned_cols=26 Identities=23% Similarity=0.514 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 107 Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+.+.+|+||||||||+++..|.-.+.
T Consensus 22 ~~~~~i~G~NGsGKSnil~Ai~~~~~ 47 (178)
T cd03239 22 NSFNAIVGPNGSGKSNIVDAICFVLG 47 (178)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcC
Confidence 33999999999999999999977553
No 438
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.40 E-value=3.8e-07 Score=74.63 Aligned_cols=103 Identities=26% Similarity=0.360 Sum_probs=61.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCCCC-ce-Ee--cCCCHH--HHHhhcCC---CcccCcchhhhHHHHHHcccccc
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQK-AS-SF--DSQDPK--EAHARRGA---PWTFNPLLLLNCLKNLRNQGSVY 179 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll~~~~p~~-G~-~~--~g~~~~--~~~~~~~~---~~~~~~~~~~tv~e~l~~~~~~~ 179 (229)
+++|.|++|||||||.+.|...+. ... .. .+ ++.-.. ......+. +..++...+...+..+..+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~---~~~~~~~~i~~Ddf~~~~~~~~~~~g~~d~~~~~d~~~l~~~l~~l~~~~~~~ 77 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR---VNGIGPVVISLDDYYVPRKTPRDEDGNYDFESILDLDLLNKNLHDLLNGKEVE 77 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH---HcCCCEEEEehhhcccCcccccccCCCCCCCccccHHHHHHHHHHHHCCCeee
Confidence 589999999999999999999875 221 11 22 221110 01111121 11122233455566666677777
Q ss_pred CCCCCCCCCCchhhhhhccCCccEEEecCCeeeec
Q 027060 180 APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 214 (229)
Q Consensus 180 ~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLD 214 (229)
.|.|+...+.+............|+|+|+.+++.+
T Consensus 78 ~p~yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~ 112 (179)
T cd02028 78 LPIYDFRTGKRRGYRKLKLPPSGVVILEGIYALNE 112 (179)
T ss_pred cccceeECCccCCCceEEeCCCCEEEEecHHhcCH
Confidence 88888776665443223345678999999998753
No 439
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.40 E-value=2.4e-07 Score=77.83 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=24.5
Q ss_pred eeeeecCC--cEEEEEcCCCCcHHHHHHHHHH
Q 027060 100 LASNVNVK--HIVGLAGPPGAGKSTLAAEVVR 129 (229)
Q Consensus 100 isl~i~~G--e~v~IiGpNGsGKSTLlk~L~g 129 (229)
.++.+..+ .+++|.||||+|||||||.|..
T Consensus 20 nd~~l~~~~~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 20 NDTEIGGGGPSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEecCCCceEEEEECCCCCChHHHHHHHHH
Confidence 34444444 7899999999999999999984
No 440
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.38 E-value=2.2e-07 Score=85.72 Aligned_cols=42 Identities=24% Similarity=0.320 Sum_probs=38.5
Q ss_pred cccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc
Q 027060 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (229)
Q Consensus 94 ~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G 139 (229)
+.+++++ |+|.+|++++|+|+||+|||||+++|+|+.+ ++.+
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~---~dv~ 184 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQ---ADVV 184 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccC---CCeE
Confidence 3489999 9999999999999999999999999999988 7754
No 441
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.38 E-value=2.4e-07 Score=85.36 Aligned_cols=64 Identities=17% Similarity=0.239 Sum_probs=52.8
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCC
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQD 146 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~ 146 (229)
+.++.+.++..|... +.+++++ |.|.+|++++|+|+||+|||||+++|+++.. ++.|. .+.|+.
T Consensus 128 ~~~~r~~v~~~l~tG---i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~---~d~~vi~~iGeR 192 (433)
T PRK07594 128 PAMVRQPITQPLMTG---IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD---ADSNVLVLIGER 192 (433)
T ss_pred CceeccCHhheeCCC---ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCC---CCEEEEEEECCC
Confidence 357778888777432 2388899 9999999999999999999999999999998 88886 555653
No 442
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.38 E-value=3.4e-07 Score=81.65 Aligned_cols=46 Identities=22% Similarity=0.263 Sum_probs=40.9
Q ss_pred ccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecC
Q 027060 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS 144 (229)
Q Consensus 95 ~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g 144 (229)
.+++++ +.+.+|++++|+|+||+|||||+++|++... ++.|. ...|
T Consensus 58 ~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~---~~~~vi~~iG 104 (326)
T cd01136 58 RAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTT---ADVNVIALIG 104 (326)
T ss_pred EEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEe
Confidence 378888 9999999999999999999999999999998 88875 4444
No 443
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.34 E-value=4.4e-07 Score=84.00 Aligned_cols=47 Identities=23% Similarity=0.298 Sum_probs=42.3
Q ss_pred ccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCC
Q 027060 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ 145 (229)
Q Consensus 95 ~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~ 145 (229)
.+++++ |.+.+|++++|+|+||+|||||+++|+++.. ++.|. .+.|+
T Consensus 147 ~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~---~~~gvI~~~Ge 194 (438)
T PRK07721 147 RAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTS---ADLNVIALIGE 194 (438)
T ss_pred hhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccC---CCeEEEEEEec
Confidence 378899 9999999999999999999999999999999 99886 55444
No 444
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.34 E-value=2.7e-07 Score=78.50 Aligned_cols=39 Identities=15% Similarity=0.180 Sum_probs=31.3
Q ss_pred ecCCcEEEEEcCCCCcHHHH-HHHHHHHhcccCCCCce-EecCC
Q 027060 104 VNVKHIVGLAGPPGAGKSTL-AAEVVRRINKIWPQKAS-SFDSQ 145 (229)
Q Consensus 104 i~~Ge~v~IiGpNGsGKSTL-lk~L~gll~~~~p~~G~-~~~g~ 145 (229)
+++|++++|+|+|||||||| ++++.++++ +.... ++..+
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~---~g~~~~yi~~e 61 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQ---NGYSVSYVSTQ 61 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHh---CCCcEEEEeCC
Confidence 67899999999999999999 699999877 54443 55443
No 445
>COG4240 Predicted kinase [General function prediction only]
Probab=98.31 E-value=1.9e-06 Score=72.81 Aligned_cols=110 Identities=32% Similarity=0.510 Sum_probs=78.7
Q ss_pred eecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-----EecCC------------CHHHHHhhcCCCcccCcchh
Q 027060 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-----SFDSQ------------DPKEAHARRGAPWTFNPLLL 165 (229)
Q Consensus 103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-----~~~g~------------~~~~~~~~~~~~~~~~~~~~ 165 (229)
+-.+.-++||.||-|||||||.-.|..++. ...|+ .+++. +.......+|.+-+++....
T Consensus 46 e~grPli~gisGpQGSGKStls~~i~~~L~---~kg~ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlg 122 (300)
T COG4240 46 ERGRPLIVGISGPQGSGKSTLSALIVRLLA---AKGLERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLG 122 (300)
T ss_pred hcCCceEEEeecCCCCchhhHHHHHHHHHH---HhcccceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHH
Confidence 344567899999999999999999999887 44332 33332 01112344678888888878
Q ss_pred hhHHHHHHccccc-cCCCCCC----CCCCchhhhhhccCCccEEEecCCeeeecc
Q 027060 166 LNCLKNLRNQGSV-YAPSFDH----GVGDPVEDDILVGLQHKVVIVDGNYLFLDG 215 (229)
Q Consensus 166 ~tv~e~l~~~~~~-~~~~~~~----~~~~~~~~~l~~~~~~rvLi~d~~~LlLDE 215 (229)
+.|++.+.-+..- -.|.||+ +.++|....-+.-....++|+|+++++...
T Consensus 123 lnVLnai~~g~~~V~lPrfDKS~f~gagDR~p~~q~ik~~vdivIlEGWfvGfrP 177 (300)
T COG4240 123 LNVLNAIARGGPTVPLPRFDKSAFAGAGDRAPQTQWIKFEVDIVILEGWFVGFRP 177 (300)
T ss_pred HHHHHHHhcCCCCcccccccchhccCCCCCCCcccceecceeEEEEeeeeeeccc
Confidence 8999999877643 4567776 667776655555556889999999998765
No 446
>PRK08149 ATP synthase SpaL; Validated
Probab=98.29 E-value=9.1e-07 Score=81.48 Aligned_cols=50 Identities=14% Similarity=0.236 Sum_probs=43.0
Q ss_pred ccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCC---ce-EecCCCHH
Q 027060 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK---AS-SFDSQDPK 148 (229)
Q Consensus 95 ~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~---G~-~~~g~~~~ 148 (229)
.+++++ +.+.+|++++|+|+||+|||||+++|++... ++. |. ..+|+++.
T Consensus 140 ~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~---~dv~v~g~Ig~rg~ev~ 193 (428)
T PRK08149 140 RAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSE---ADVFVIGLIGERGREVT 193 (428)
T ss_pred EEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCC---CCeEEEEEEeeCCccHH
Confidence 388999 9999999999999999999999999999887 765 53 66677653
No 447
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.27 E-value=8.1e-07 Score=87.53 Aligned_cols=39 Identities=15% Similarity=0.269 Sum_probs=33.6
Q ss_pred ceeeeecCC-cEEEEEcCCCCcHHHHHHHHHHH-hcccCCCCce
Q 027060 99 ALASNVNVK-HIVGLAGPPGAGKSTLAAEVVRR-INKIWPQKAS 140 (229)
Q Consensus 99 ~isl~i~~G-e~v~IiGpNGsGKSTLlk~L~gl-l~~~~p~~G~ 140 (229)
.+++.+..+ ++++|.||||+|||||||+|+|. +. +..|.
T Consensus 313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~---aq~G~ 353 (771)
T TIGR01069 313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALM---FQSGI 353 (771)
T ss_pred eceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHH---HHhCC
Confidence 478888877 89999999999999999999998 45 56663
No 448
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.26 E-value=1.2e-06 Score=81.03 Aligned_cols=49 Identities=20% Similarity=0.268 Sum_probs=43.4
Q ss_pred cccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCC
Q 027060 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQD 146 (229)
Q Consensus 94 ~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~ 146 (229)
+.+++++ +.+.+|++++|+|+||+|||||+++|++... ++.|. .+.|+.
T Consensus 151 i~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~---~d~~vi~~iGer 200 (441)
T PRK09099 151 VRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQ---CDVNVIALIGER 200 (441)
T ss_pred ceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCC---CCeEEEEEEccC
Confidence 3488999 9999999999999999999999999999998 88886 556653
No 449
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.26 E-value=6.5e-07 Score=73.37 Aligned_cols=26 Identities=35% Similarity=0.616 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 107 Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
|++++|+||||||||||+++|++...
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 78999999999999999999999876
No 450
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.24 E-value=1.3e-06 Score=80.20 Aligned_cols=52 Identities=23% Similarity=0.309 Sum_probs=38.7
Q ss_pred eeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce
Q 027060 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (229)
Q Consensus 82 ~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~ 140 (229)
++..+|+.... .|..+ =...+|.++||+|+||-||||-+|+|+|.+. |.=|.
T Consensus 79 e~vHRYg~NgF---kL~~L-P~pr~G~V~GilG~NGiGKsTalkILaGel~---PNLG~ 130 (591)
T COG1245 79 EVVHRYGVNGF---KLYRL-PTPRPGKVVGILGPNGIGKSTALKILAGELK---PNLGR 130 (591)
T ss_pred cceeeccCCce---EEecC-CCCCCCcEEEEEcCCCccHHHHHHHHhCccc---cCCCC
Confidence 35678876431 12111 1246899999999999999999999999998 87664
No 451
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.23 E-value=9.3e-07 Score=81.54 Aligned_cols=47 Identities=19% Similarity=0.254 Sum_probs=41.7
Q ss_pred ccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCC
Q 027060 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ 145 (229)
Q Consensus 95 ~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~ 145 (229)
.+++++ |.+.+|++++|+|+||+|||||+++|++... ++.|. ...|+
T Consensus 134 ~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~---~~~~vi~~iG~ 181 (422)
T TIGR02546 134 RAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGAS---ADVNVIALIGE 181 (422)
T ss_pred eeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEcc
Confidence 378999 9999999999999999999999999999998 88886 44333
No 452
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.22 E-value=2.6e-06 Score=77.77 Aligned_cols=122 Identities=16% Similarity=0.219 Sum_probs=74.3
Q ss_pred cccceeeeecCCc-----EEEEEcCCCCcHHHHHHHHHHHhcccCCCCceE-------ecCCC--------HHHHHhhcC
Q 027060 96 PTSALASNVNVKH-----IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-------FDSQD--------PKEAHARRG 155 (229)
Q Consensus 96 ~l~~isl~i~~Ge-----~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~~-------~~g~~--------~~~~~~~~~ 155 (229)
.+.+..+.|..|+ ++..+|.||.|||||+++++|.++ |+.|.. +.-+. +...... .
T Consensus 351 ~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~---pd~~~e~p~lnVSykpqkispK~~~tvR~ll~~-k 426 (592)
T KOG0063|consen 351 TVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLK---PDEGGEIPVLNVSYKPQKISPKREGTVRQLLHT-K 426 (592)
T ss_pred eeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCC---CCccCcccccceeccccccCccccchHHHHHHH-H
Confidence 4557778888775 589999999999999999999999 988731 11111 1111110 0
Q ss_pred CCcccCcchh-hhHHHHHHcccc--ccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHH
Q 027060 156 APWTFNPLLL-LNCLKNLRNQGS--VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV 221 (229)
Q Consensus 156 ~~~~~~~~~~-~tv~e~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l 221 (229)
+-..+..+.+ -.|.+-|..-.. ......+.+..++++..+.+|..+.+.+.|++...||-..+...
T Consensus 427 Ir~ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~A 495 (592)
T KOG0063|consen 427 IRDAYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIA 495 (592)
T ss_pred hHhhhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHH
Confidence 1001111111 111111111000 01123456778899999999999999999999999998765433
No 453
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.20 E-value=1.4e-06 Score=80.77 Aligned_cols=47 Identities=21% Similarity=0.292 Sum_probs=40.9
Q ss_pred ccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCC
Q 027060 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ 145 (229)
Q Consensus 95 ~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~ 145 (229)
.+++++ |.+.+|++++|+|+||+|||||+++|++... ++.+. ...|+
T Consensus 152 ~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~---~~~~vi~~iG~ 199 (440)
T TIGR01026 152 RSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTE---ADVNVIALIGE 199 (440)
T ss_pred eeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCC---CCEEEEEEEee
Confidence 378888 9999999999999999999999999999988 88775 44444
No 454
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.18 E-value=2.3e-06 Score=78.69 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=43.0
Q ss_pred ccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCC
Q 027060 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQD 146 (229)
Q Consensus 95 ~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~ 146 (229)
.+++++ +.+.+|++++|+|+||+|||||+++|++..+ ++.|. ...|++
T Consensus 126 ~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~---~~~gvi~~~Ger 174 (413)
T TIGR03497 126 KAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAK---ADINVIALIGER 174 (413)
T ss_pred eeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCeEEEEEEccc
Confidence 378889 9999999999999999999999999999988 88886 566664
No 455
>PRK05922 type III secretion system ATPase; Validated
Probab=98.18 E-value=1.9e-06 Score=79.41 Aligned_cols=46 Identities=17% Similarity=0.329 Sum_probs=39.4
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCC
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ 145 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~ 145 (229)
+++.+ +.+.+|++++|+|+||+|||||+++|++..+ ++.|. ...|+
T Consensus 147 ~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~---~d~gvi~liGe 193 (434)
T PRK05922 147 AIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSK---STINVIALIGE 193 (434)
T ss_pred eecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCC---CCceEEEEeCC
Confidence 56555 9999999999999999999999999999988 88886 33343
No 456
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.18 E-value=1.5e-06 Score=80.01 Aligned_cols=47 Identities=17% Similarity=0.192 Sum_probs=41.1
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCC
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQD 146 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~ 146 (229)
++ |.+|.+.+|++++|+|+||+|||||+++|+++.+ ++.|. .+.|+.
T Consensus 130 ai-D~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~---~~~gvi~~iGer 177 (418)
T TIGR03498 130 VI-DTFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTD---ADVVVIALVGER 177 (418)
T ss_pred EE-eeeccccCCcEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEeee
Confidence 45 5799999999999999999999999999999998 88886 555553
No 457
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.17 E-value=1.2e-06 Score=81.91 Aligned_cols=41 Identities=22% Similarity=0.332 Sum_probs=35.0
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G 139 (229)
++++.++.+.+|.+++|+||||+||||++..|++.+. ...|
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~---~~~G 285 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCV---MRHG 285 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHH---HhcC
Confidence 4556777788999999999999999999999999886 5544
No 458
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.17 E-value=2.5e-06 Score=78.42 Aligned_cols=62 Identities=21% Similarity=0.244 Sum_probs=48.1
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCC
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQD 146 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~ 146 (229)
++-..++..|... +.+++.+ |.+.+|++++|+|+||+|||||+++|++... ++.+. ...|++
T Consensus 112 ~~R~~~~~~~~tG---i~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~---~~~~vi~~iGer 174 (411)
T TIGR03496 112 LKRAPIDEPLDVG---VRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTE---ADVVVVGLIGER 174 (411)
T ss_pred HhccCcceEeeee---EEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCC---CCEEEEEEEecC
Confidence 4444556666422 2377777 9999999999999999999999999999998 88775 445553
No 459
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.16 E-value=1.3e-06 Score=77.40 Aligned_cols=40 Identities=20% Similarity=0.360 Sum_probs=36.2
Q ss_pred eeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-Ee
Q 027060 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SF 142 (229)
Q Consensus 100 isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~ 142 (229)
+++.+..|+.++|+|++|||||||+++|+++++ +..+. .+
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~---~~~~iv~i 177 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIP---KDERIITI 177 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCC---ccccEEEE
Confidence 578899999999999999999999999999998 88776 55
No 460
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.14 E-value=2e-06 Score=71.10 Aligned_cols=28 Identities=39% Similarity=0.582 Sum_probs=26.1
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
++|++++|+||+|||||||+++|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999864
No 461
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=98.13 E-value=2e-06 Score=79.67 Aligned_cols=38 Identities=26% Similarity=0.319 Sum_probs=35.4
Q ss_pred cccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 94 ~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+.+++++ |.|.+|++++|+|+||+|||||+++|+++..
T Consensus 156 i~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~ 193 (451)
T PRK05688 156 IRSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTE 193 (451)
T ss_pred eeeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4488888 9999999999999999999999999999877
No 462
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.12 E-value=5.3e-06 Score=73.89 Aligned_cols=67 Identities=15% Similarity=0.194 Sum_probs=45.0
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCH---------HHHHhhcCCCcccCc---chhhhHHHH
Q 027060 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDP---------KEAHARRGAPWTFNP---LLLLNCLKN 171 (229)
Q Consensus 105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~---------~~~~~~~~~~~~~~~---~~~~tv~e~ 171 (229)
.+|++++|+||||+||||++..|++.+. +.++. .+.+.|. .....+.++++.++. .+...+.++
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~---~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~ 188 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYK---AQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDA 188 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH---hcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHH
Confidence 5789999999999999999999999998 77664 5444442 112334556554432 222455666
Q ss_pred HHc
Q 027060 172 LRN 174 (229)
Q Consensus 172 l~~ 174 (229)
+..
T Consensus 189 l~~ 191 (318)
T PRK10416 189 IQA 191 (318)
T ss_pred HHH
Confidence 553
No 463
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=98.12 E-value=2.1e-06 Score=79.17 Aligned_cols=37 Identities=27% Similarity=0.328 Sum_probs=33.6
Q ss_pred ccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 95 ~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
.+++.+ +.+.+|++++|+|+||+|||||+++|++...
T Consensus 151 ~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~ 187 (444)
T PRK08972 151 RAINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTT 187 (444)
T ss_pred eeecce-EEEcCCCEEEEECCCCCChhHHHHHhccCCC
Confidence 366666 9999999999999999999999999999776
No 464
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.11 E-value=8.2e-07 Score=72.84 Aligned_cols=29 Identities=38% Similarity=0.360 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHH-HHhcccCCCCce
Q 027060 109 IVGLAGPPGAGKSTLAAEVV-RRINKIWPQKAS 140 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~-gll~~~~p~~G~ 140 (229)
++.|.||||+|||||+|.|. ..+- ...|.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~l---a~~G~ 30 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIM---AQIGS 30 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHH---HHhCC
Confidence 36899999999999999998 4333 44554
No 465
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.10 E-value=6.2e-06 Score=71.55 Aligned_cols=116 Identities=14% Similarity=0.081 Sum_probs=64.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCCCCc-e-EecCCCH--------HHH---HhhcCC------CcccCcchhhhHH
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-S-SFDSQDP--------KEA---HARRGA------PWTFNPLLLLNCL 169 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G-~-~~~g~~~--------~~~---~~~~~~------~~~~~~~~~~tv~ 169 (229)
++||.|.+||||||+.+.|...+. ...- . .+.+.+. ... ..+.+. +..++...+...+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~---~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l 77 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFA---REGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELF 77 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH---hcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHH
Confidence 589999999999999999998775 2211 1 3333221 100 011222 2222333346666
Q ss_pred HHHHccccccCCCCCCCC-----CCchhhhhh----ccCCccEEEecCCeeeecccCHHHHHHHHhhh
Q 027060 170 KNLRNQGSVYAPSFDHGV-----GDPVEDDIL----VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 228 (229)
Q Consensus 170 e~l~~~~~~~~~~~~~~~-----~~~~~~~l~----~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~~ 228 (229)
..+..+.....+.|++.. ..+..+.+. ......||+.|+-..++.- ...++++++|.+
T Consensus 78 ~~L~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~~~~~~~p~dvIivEGLhg~~~~-~~~~lr~~~Dlk 144 (277)
T cd02029 78 RTYGETGRGRSRYYLHSDEEAAPFNQEPGTFTPWEDLPEDTDLLFYEGLHGGVVT-EGYNVAQHADLL 144 (277)
T ss_pred HHHHcCCCcccceeeccccccccccCCCCccCCcccccCCCcEEEECCCCccccc-ccHHHHHhCCeE
Confidence 777777777777776532 112222221 2367899999998733321 012666666654
No 466
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.10 E-value=3.4e-06 Score=77.83 Aligned_cols=63 Identities=16% Similarity=0.302 Sum_probs=50.9
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCC
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQD 146 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~ 146 (229)
.++.+.+++.|... +.+++. .|.+.+|++++|+|+||+|||||+++|++..+ ++.|. .+.|+.
T Consensus 130 ~~~r~~i~~~l~TG---iraID~-ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~---~~~gvI~~iGer 193 (432)
T PRK06793 130 AFEREEITDVFETG---IKSIDS-MLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAK---ADINVISLVGER 193 (432)
T ss_pred chheechhhccCCC---CEEEec-cceecCCcEEEEECCCCCChHHHHHHHhccCC---CCeEEEEeCCCC
Confidence 46677777777543 236666 59999999999999999999999999999998 88886 555553
No 467
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=98.10 E-value=2.9e-06 Score=68.98 Aligned_cols=35 Identities=23% Similarity=0.354 Sum_probs=28.6
Q ss_pred ccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 97 l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
++++++++.+| +++|+|+||+||||++.+|.-.+-
T Consensus 10 ~~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~~~L~ 44 (202)
T PF13476_consen 10 FKDLEIDFSPG-LNVIYGPNGSGKSTILEAIRYALG 44 (202)
T ss_dssp EEEEEEE--SE-EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcceEEEcCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 45677777776 999999999999999999988875
No 468
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.07 E-value=4.7e-06 Score=67.46 Aligned_cols=26 Identities=35% Similarity=0.567 Sum_probs=24.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 107 Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
|++++|+||||||||||++.|++.+.
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 67899999999999999999999876
No 469
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=98.06 E-value=3.9e-06 Score=77.49 Aligned_cols=47 Identities=19% Similarity=0.235 Sum_probs=41.0
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCC
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQD 146 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~ 146 (229)
+++++ +.+.+|++++|+|+||+|||||+++|++... ++.+. ...|++
T Consensus 147 aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~---~~v~vi~~iGer 194 (434)
T PRK08472 147 SIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCL---APIKVVALIGER 194 (434)
T ss_pred Hhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccC---CCEEEEEeeCcc
Confidence 78899 9999999999999999999999999999887 77775 555553
No 470
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=98.04 E-value=4e-06 Score=77.60 Aligned_cols=50 Identities=20% Similarity=0.223 Sum_probs=41.0
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCC---c-eEecCCCHHH
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK---A-SSFDSQDPKE 149 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~---G-~~~~g~~~~~ 149 (229)
+++ .-|.+.+|++++|+|+||+|||||+++|+++.+ ++. | ..+.|.++..
T Consensus 165 aID-~ll~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~---~d~iv~g~Igerg~ev~e 218 (455)
T PRK07960 165 AIN-ALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQ---ADVIVVGLIGERGREVKD 218 (455)
T ss_pred eee-ecccccCCcEEEEECCCCCCccHHHHHHhCCCC---CCEEEEEEEEECCeEHHH
Confidence 443 449999999999999999999999999999988 774 4 3666776543
No 471
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.04 E-value=3.3e-06 Score=68.35 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 107 Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
|++++|+||||||||||++.|++..+
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 78999999999999999999999764
No 472
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.02 E-value=4.3e-06 Score=77.33 Aligned_cols=48 Identities=17% Similarity=0.246 Sum_probs=38.9
Q ss_pred cccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecC
Q 027060 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS 144 (229)
Q Consensus 94 ~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g 144 (229)
+.+++++ |.+.+|++++|+|+||+|||||+++|+++.+. .+.+. .+.|
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~--~~~~vi~liG 200 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEE--ADVNVIALIG 200 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhccccc--CCceEEEEEC
Confidence 4478777 99999999999999999999999999998850 33455 4444
No 473
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.00 E-value=5.7e-06 Score=87.12 Aligned_cols=46 Identities=11% Similarity=0.165 Sum_probs=37.6
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHH
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEV 127 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L 127 (229)
++..++...+.... .|+||+|+|++|++++|+|+||||||||+..+
T Consensus 936 l~~~~i~i~~~~~~----~lk~isl~i~~gei~~itG~nGsGKStL~~~~ 981 (1809)
T PRK00635 936 PVPADITIKNAYQH----NLKHIDLSLPRNALTAVTGPSASGKHSLVFDI 981 (1809)
T ss_pred cccceEEEeccccc----cccceeEEecCCcEEEEECCCCCChhHHHHHH
Confidence 34556666665333 58899999999999999999999999988766
No 474
>PRK06936 type III secretion system ATPase; Provisional
Probab=98.00 E-value=5.2e-06 Score=76.66 Aligned_cols=42 Identities=24% Similarity=0.328 Sum_probs=37.6
Q ss_pred cccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc
Q 027060 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (229)
Q Consensus 94 ~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G 139 (229)
+.+++++ +.+.+|++++|+|+||+|||||+++|++... ++--
T Consensus 150 i~vid~l-~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~~---~dv~ 191 (439)
T PRK06936 150 VRVIDGL-LTCGEGQRMGIFAAAGGGKSTLLASLIRSAE---VDVT 191 (439)
T ss_pred cceeeee-EEecCCCEEEEECCCCCChHHHHHHHhcCCC---CCEE
Confidence 3478899 9999999999999999999999999999887 6543
No 475
>PRK15453 phosphoribulokinase; Provisional
Probab=98.00 E-value=3.3e-05 Score=67.55 Aligned_cols=119 Identities=13% Similarity=0.077 Sum_probs=63.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCC-ce-EecCCCH-----HH------HHhhcCCC------cccCcchhh
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-AS-SFDSQDP-----KE------AHARRGAP------WTFNPLLLL 166 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~-G~-~~~g~~~-----~~------~~~~~~~~------~~~~~~~~~ 166 (229)
+.-+++|.|.+||||||+.+.|...+. ... .. .+.+.+. .. ...+.+.. ..++...+.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~---~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~ 80 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFR---RENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELE 80 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh---hcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHH
Confidence 567899999999999999999988765 221 12 3333221 11 11223332 222222335
Q ss_pred hHHHHHHccccccCCCCCCCC-----CCchhhhh----hccCCccEEEecCCeeeecccCHHHHHHHHhhh
Q 027060 167 NCLKNLRNQGSVYAPSFDHGV-----GDPVEDDI----LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 228 (229)
Q Consensus 167 tv~e~l~~~~~~~~~~~~~~~-----~~~~~~~l----~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~~ 228 (229)
..+..+..+.....+.|++.. ..+..+.+ .+....+||+.|+-..++.- ....+++++|.+
T Consensus 81 ~~l~~l~~~~~g~~~~Y~h~f~~a~~~~~~~gtft~~e~i~~p~dvIivEGLh~~~~~-~~~~lr~~~Dlk 150 (290)
T PRK15453 81 QLFREYGETGTGKTRKYLHTDDEAVPYNQVPGTFTPWEPLPEGTDLLFYEGLHGGVVT-DQVDVAQHVDLL 150 (290)
T ss_pred HHHHHHhcCCCcceeeccccccccccCCCCCCccCCceEecCCCcEEEEecccccccc-ccHHHHHhCCee
Confidence 555555555444444444221 22222221 23356889999998776431 123555555543
No 476
>PRK07667 uridine kinase; Provisional
Probab=97.99 E-value=1.5e-05 Score=65.85 Aligned_cols=101 Identities=16% Similarity=0.278 Sum_probs=56.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc--e---EecCCCHH-HHHhhcCCCcc-------cCcchh-hhHHHH
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA--S---SFDSQDPK-EAHARRGAPWT-------FNPLLL-LNCLKN 171 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G--~---~~~g~~~~-~~~~~~~~~~~-------~~~~~~-~tv~e~ 171 (229)
..-+|||-|+.|||||||.+.|...+. . .| . ..++.-.. ..+...+.... ++...+ ..++..
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~---~-~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~~ 91 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMK---Q-EGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRK 91 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH---h-CCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHHh
Confidence 345899999999999999999999885 2 22 1 22321111 11112222110 111112 234555
Q ss_pred HHccccccCCCCCCCCCCchhhhhhccCCccEEEecCCee
Q 027060 172 LRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL 211 (229)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~L 211 (229)
+..+..+..|.|+............. ....++|+|++++
T Consensus 92 L~~~~~i~~P~~d~~~~~~~~~~~~~-~~~~vvIvEG~~l 130 (193)
T PRK07667 92 LQNETKLTLPFYHDETDTCEMKKVQI-PIVGVIVIEGVFL 130 (193)
T ss_pred hcCCCeEEEeeeccccccccccceec-CCCCEEEEEehhh
Confidence 65555666677777665443222222 3468999999985
No 477
>PRK06820 type III secretion system ATPase; Validated
Probab=97.98 E-value=7.6e-06 Score=75.68 Aligned_cols=48 Identities=15% Similarity=0.216 Sum_probs=40.6
Q ss_pred cccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCC
Q 027060 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ 145 (229)
Q Consensus 94 ~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~ 145 (229)
+.+++.+ +.+.+|++++|+|+||+|||||+++|++... ++.+. ...|+
T Consensus 151 i~aID~l-~~i~~Gqri~I~G~sG~GKStLl~~I~~~~~---~dv~V~~~iGe 199 (440)
T PRK06820 151 IRAIDGI-LSCGEGQRIGIFAAAGVGKSTLLGMLCADSA---ADVMVLALIGE 199 (440)
T ss_pred Cceecce-EEecCCCEEEEECCCCCChHHHHHHHhccCC---CCEEEEEEEcc
Confidence 3488888 9999999999999999999999999999887 77654 33444
No 478
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.98 E-value=4.4e-06 Score=81.71 Aligned_cols=41 Identities=22% Similarity=0.345 Sum_probs=35.3
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G 139 (229)
++++.++.+.+|++++|+||||+||||++..|++.+. ...|
T Consensus 174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~---~~~G 214 (767)
T PRK14723 174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCV---AREG 214 (767)
T ss_pred hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHH---HHcC
Confidence 4667888888899999999999999999999999885 4544
No 479
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.97 E-value=6.5e-06 Score=75.82 Aligned_cols=28 Identities=32% Similarity=0.579 Sum_probs=25.8
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 104 i~~Ge~v~IiGpNGsGKSTLlk~L~gll 131 (229)
+.+|++++|+||||+||||+++.|++..
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999999999864
No 480
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.96 E-value=1.5e-05 Score=83.10 Aligned_cols=45 Identities=29% Similarity=0.337 Sum_probs=37.0
Q ss_pred ccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCC
Q 027060 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ 145 (229)
Q Consensus 97 l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~ 145 (229)
+.+..|++..| +++|+|+|||||||+|++|++++. +..|. .+++.
T Consensus 18 ~~~~~~~f~~~-~~~l~G~NGaGKSTll~ai~~~l~---~~~~~~~f~~~ 63 (1486)
T PRK04863 18 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALI---PDLTLLHFRNT 63 (1486)
T ss_pred ccceEEEecCC-eEEEECCCCCCHHHHHHHHHcccc---CCCCeEEECCc
Confidence 34567888875 999999999999999999999998 77775 55543
No 481
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=97.94 E-value=1.2e-05 Score=75.67 Aligned_cols=56 Identities=18% Similarity=0.340 Sum_probs=43.0
Q ss_pred eeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCceEec
Q 027060 83 MDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143 (229)
Q Consensus 83 ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~ 143 (229)
+..++|+.. .++|+-+.+ +|.+++|.||+||||||+.+.|+..+.....+.|.++.
T Consensus 265 ~A~~~g~~R----LIDN~~~~~-~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR 320 (512)
T PRK13477 265 IAVRCGSTR----LIDNVFLMK-RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYR 320 (512)
T ss_pred EEEEeCCeE----EEeeeEecc-CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceeh
Confidence 455666544 789999988 88999999999999999999999765422356665443
No 482
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.91 E-value=1.4e-05 Score=67.58 Aligned_cols=36 Identities=28% Similarity=0.335 Sum_probs=33.8
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll 131 (229)
+-+|++|++.+|++++|.||||+|||||++++++..
T Consensus 19 v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~ 54 (218)
T cd03286 19 VPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAV 54 (218)
T ss_pred EEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHH
Confidence 678999999999999999999999999999999864
No 483
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.89 E-value=1.1e-05 Score=73.20 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=33.4
Q ss_pred ccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 95 ~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
.++++.++.+.+|.+++|+||||+||||++..|++.+.
T Consensus 125 ~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~ 162 (374)
T PRK14722 125 PVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCV 162 (374)
T ss_pred hhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35667788899999999999999999999999998753
No 484
>PRK01889 GTPase RsgA; Reviewed
Probab=97.89 E-value=7.8e-06 Score=73.90 Aligned_cols=45 Identities=27% Similarity=0.319 Sum_probs=37.7
Q ss_pred ccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecC
Q 027060 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS 144 (229)
Q Consensus 97 l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g 144 (229)
++.+.-.+.+|++++|+|+||+|||||++.|+|... +..|. .+.+
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~---~~~G~i~~~~ 230 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEV---QKTGAVREDD 230 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcc---cceeeEEECC
Confidence 334555677899999999999999999999999998 88896 5554
No 485
>PRK15494 era GTPase Era; Provisional
Probab=97.86 E-value=1.2e-05 Score=72.31 Aligned_cols=51 Identities=31% Similarity=0.302 Sum_probs=44.3
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCc-------EEEEEcCCCCcHHHHHHHHHHH
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKH-------IVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge-------~v~IiGpNGsGKSTLlk~L~gl 130 (229)
-++..++++.|+... .+++.++++++.|+ .++|+|.+|+|||||++.|.|.
T Consensus 18 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~ 75 (339)
T PRK15494 18 DTEALAAAVREDAST---GSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGE 75 (339)
T ss_pred ccccccccccCCCCc---ccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCC
Confidence 377889999998532 27889999999999 9999999999999999999884
No 486
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=97.84 E-value=2.6e-05 Score=79.59 Aligned_cols=48 Identities=17% Similarity=0.358 Sum_probs=38.0
Q ss_pred eEEEeeeeEEcCccccccccccceeee---ecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASN---VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~---i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
-|.++|+...++.. .|+|+ +..+.+++|+|||||||||+|..|+..+-
T Consensus 5 ~l~~~nf~s~~~~~--------~idf~~~~l~~~~l~~I~G~tGaGKStildai~~aLy 55 (1047)
T PRK10246 5 SLRLKNLNSLKGEW--------KIDFTAEPFASNGLFAITGPTGAGKTTLLDAICLALY 55 (1047)
T ss_pred EEEeecceeEcCCc--------eEEEeeccCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 37788887444332 57888 45689999999999999999999997664
No 487
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.83 E-value=2.2e-05 Score=64.96 Aligned_cols=41 Identities=20% Similarity=0.356 Sum_probs=33.2
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCC-ce-EecCCCHH
Q 027060 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-AS-SFDSQDPK 148 (229)
Q Consensus 105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~-G~-~~~g~~~~ 148 (229)
.+|.+++|+|+||||||||.+.|.+.+. +.. |. .++|.++.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~---~~~~~~~~ld~d~~~ 64 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALH---ELGVSTYLLDGDNVR 64 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH---hCCCCEEEEcCEeHH
Confidence 5789999999999999999999999886 543 34 67765543
No 488
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.81 E-value=2.1e-05 Score=81.88 Aligned_cols=59 Identities=17% Similarity=0.230 Sum_probs=39.5
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHH----HHhcccCCC-Cce-EecCCC
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVV----RRINKIWPQ-KAS-SFDSQD 146 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~----gll~~~~p~-~G~-~~~g~~ 146 (229)
|.+.|+- +|++... --.-|.|. ..+++|+|||||||||++.+|. |..+ |. .|. .+.+.+
T Consensus 6 l~i~g~r-Sf~~~~~---~~~~I~F~---~~~~~I~G~NGaGKTTil~ai~~al~G~~~---~~~~g~~~i~~~~ 70 (1311)
T TIGR00606 6 MSILGVR-SFGIEDK---DKQIIDFF---SPLTILVGPNGAGKTTIIECLKYICTGDFP---PGTKGNTFVHDPK 70 (1311)
T ss_pred eeeecee-cCCCccc---cceeeecc---cceEEEECCCCCCHHHHHHHHHHHhcCCCC---CCCCCceEecCCC
Confidence 6778874 7764110 01124443 3599999999999999999994 8777 75 464 665543
No 489
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.81 E-value=3.5e-05 Score=74.86 Aligned_cols=47 Identities=17% Similarity=0.222 Sum_probs=37.1
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCc-EEEEEcCCCCcHHHHHHHHHHHh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKH-IVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge-~v~IiGpNGsGKSTLlk~L~gll 131 (229)
-|.++|+...|+. +.++|....|+ +++|+|+||+|||||+++|.-.+
T Consensus 5 ~l~l~nf~~~~~~--------~~~~~~~~~~~~~~~i~G~Ng~GKttll~ai~~~L 52 (650)
T TIGR03185 5 QLTLENFGPYRGR--------QTFDLSPSSPKPIILIGGLNGAGKTTLLDAIQLAL 52 (650)
T ss_pred EEEEeceEEEcCC--------ceeeeecCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4788899765553 15677777765 89999999999999999986554
No 490
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.81 E-value=1.6e-05 Score=70.20 Aligned_cols=37 Identities=32% Similarity=0.479 Sum_probs=35.0
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+++++++...++.+++|+|++|||||||++.|.+.+.
T Consensus 23 ~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~ 59 (300)
T TIGR00750 23 LLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELR 59 (300)
T ss_pred HHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999876
No 491
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.79 E-value=1.7e-05 Score=64.35 Aligned_cols=33 Identities=27% Similarity=0.189 Sum_probs=28.7
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHH
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~g 129 (229)
+|+++++...++++ +|+|++|||||||++.+.+
T Consensus 9 ~~~~~~~~~~~~ki-~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 9 VLSSLGLYNKEAKI-LFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred HHHHhhcccCCCEE-EEECCCCCCHHHHHHHHhc
Confidence 47788888777655 9999999999999999987
No 492
>PRK13695 putative NTPase; Provisional
Probab=97.77 E-value=1.4e-05 Score=64.56 Aligned_cols=24 Identities=38% Similarity=0.866 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
.++|+|+||+|||||++.|.+.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~ 25 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLK 25 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999876
No 493
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.77 E-value=5.2e-05 Score=61.22 Aligned_cols=39 Identities=23% Similarity=0.346 Sum_probs=31.8
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce--EecCCC
Q 027060 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS--SFDSQD 146 (229)
Q Consensus 105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~--~~~g~~ 146 (229)
.+|++++|+|++||||||+.+.|++.+. +..+. .+++..
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~---~~g~~v~~id~D~ 42 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLR---EAGYPVEVLDGDA 42 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEcCcc
Confidence 4799999999999999999999999987 55443 455543
No 494
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.77 E-value=3.7e-05 Score=67.50 Aligned_cols=41 Identities=22% Similarity=0.425 Sum_probs=33.4
Q ss_pred eeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCC
Q 027060 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ 145 (229)
Q Consensus 102 l~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~ 145 (229)
|.=..+.+++|+|+||||||||++.+.+.+. ...+. .+.|.
T Consensus 99 ~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~---~~~~~~VI~gD 140 (290)
T PRK10463 99 FAARKQLVLNLVSSPGSGKTTLLTETLMRLK---DSVPCAVIEGD 140 (290)
T ss_pred HHhcCCeEEEEECCCCCCHHHHHHHHHHHhc---cCCCEEEECCC
Confidence 4445789999999999999999999999887 66665 55554
No 495
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.77 E-value=2.4e-05 Score=58.63 Aligned_cols=27 Identities=37% Similarity=0.759 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
.+..+.|+||+|+||||+++.|+..+.
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccC
Confidence 367899999999999999999999887
No 496
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.76 E-value=3.7e-05 Score=63.96 Aligned_cols=29 Identities=31% Similarity=0.609 Sum_probs=25.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCCCCce
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~ 140 (229)
.++|+|+||||||||++.|.+.+. +..+.
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~---~~~~~ 31 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALR---QKYQL 31 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhC---cCCcE
Confidence 689999999999999999999987 66554
No 497
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=97.75 E-value=1.3e-05 Score=75.50 Aligned_cols=47 Identities=28% Similarity=0.435 Sum_probs=41.5
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCC
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ 145 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~ 145 (229)
+++.+++.+..|+.+.|+||||+|||||++.|.++++ |.+|. .+.+.
T Consensus 200 ~~~al~~aa~~g~~vlliG~pGsGKTtlar~l~~llp---~~~~~~~le~~ 247 (499)
T TIGR00368 200 AKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGILP---PLTNEEAIETA 247 (499)
T ss_pred HHhhhhhhccCCCEEEEEecCCCCHHHHHHHHhcccC---CCCCcEEEecc
Confidence 6789999999999999999999999999999999998 88774 54443
No 498
>COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only]
Probab=97.71 E-value=3.1e-05 Score=69.08 Aligned_cols=37 Identities=22% Similarity=0.309 Sum_probs=33.0
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
-+.++.+++.+++.+.|+||||+||||+|.+|-.-+.
T Consensus 13 ~f~~lditf~e~~ttIivgpNGsGKTtvLdair~aL~ 49 (440)
T COG3950 13 CFLNLDITFGESETTIIVGPNGSGKTTVLDAIRNALN 49 (440)
T ss_pred hhhhceeecCCCceEEEECCCCCChhhHHHHHHHHHH
Confidence 3558889999999999999999999999999987765
No 499
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.71 E-value=2.7e-05 Score=62.03 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 027060 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 107 Ge~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.-.++|+|+||||||||++.|.+.
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 456999999999999999999996
No 500
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.71 E-value=3.9e-05 Score=78.29 Aligned_cols=46 Identities=20% Similarity=0.294 Sum_probs=34.2
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll 131 (229)
-|+++|+. +|.+.. .|+|+-. +.+++|+|||||||||||.+|+--+
T Consensus 5 ~L~l~nf~-s~~~~~-------~idF~~~-~gl~~I~G~nGaGKSTildAI~~aL 50 (1042)
T TIGR00618 5 RLTLKNFG-SYKGTH-------TIDFTAL-GPIFLICGKTGAGKTTLLDAITYAL 50 (1042)
T ss_pred EEEEeCee-ccCCCc-------eeeecCC-CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 37788885 565432 3456544 2799999999999999999999544
Done!