Query 027060
Match_columns 229
No_of_seqs 388 out of 3130
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 06:42:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027060.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027060hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fvq_A Fe(3+) IONS import ATP- 99.9 7.3E-27 2.5E-31 208.8 6.1 143 76-225 3-181 (359)
2 3tui_C Methionine import ATP-b 99.9 1.2E-26 4.2E-31 207.7 7.4 151 74-227 21-208 (366)
3 2pcj_A ABC transporter, lipopr 99.9 1.5E-26 5.1E-31 194.4 6.0 146 75-227 2-185 (224)
4 3rlf_A Maltose/maltodextrin im 99.9 9.3E-27 3.2E-31 209.5 3.9 144 76-226 2-177 (381)
5 2olj_A Amino acid ABC transpor 99.9 2.8E-26 9.6E-31 197.3 6.5 95 74-175 21-124 (263)
6 4g1u_C Hemin import ATP-bindin 99.9 7.9E-26 2.7E-30 194.7 8.9 146 75-227 9-192 (266)
7 1vpl_A ABC transporter, ATP-bi 99.9 2.9E-26 1E-30 196.4 5.9 148 73-227 11-191 (256)
8 3gfo_A Cobalt import ATP-bindi 99.9 5.5E-26 1.9E-30 196.6 7.0 146 76-227 6-188 (275)
9 1g6h_A High-affinity branched- 99.9 5.1E-26 1.7E-30 194.8 6.4 95 75-176 5-107 (257)
10 3tif_A Uncharacterized ABC tra 99.9 3.8E-26 1.3E-30 193.2 5.5 96 77-175 1-107 (235)
11 1v43_A Sugar-binding transport 99.9 9.1E-26 3.1E-30 202.7 7.9 146 75-227 9-186 (372)
12 2yyz_A Sugar ABC transporter, 99.9 5.2E-26 1.8E-30 203.4 6.0 144 76-226 2-177 (359)
13 1ji0_A ABC transporter; ATP bi 99.9 1.1E-25 3.6E-30 191.0 7.3 94 76-176 5-106 (240)
14 1sgw_A Putative ABC transporte 99.9 1.7E-25 5.7E-30 187.0 6.8 143 75-227 8-178 (214)
15 2it1_A 362AA long hypothetical 99.9 9.6E-26 3.3E-30 201.9 5.2 144 76-226 2-177 (362)
16 1g29_1 MALK, maltose transport 99.9 5.6E-26 1.9E-30 204.2 3.7 94 76-176 2-106 (372)
17 1z47_A CYSA, putative ABC-tran 99.9 9.2E-26 3.2E-30 201.5 4.8 146 74-226 11-189 (355)
18 1b0u_A Histidine permease; ABC 99.9 1.6E-25 5.4E-30 192.3 6.0 92 77-175 6-117 (262)
19 2ixe_A Antigen peptide transpo 99.9 2.9E-25 9.9E-30 191.6 6.6 96 76-176 15-117 (271)
20 2yz2_A Putative ABC transporte 99.9 2.9E-25 9.8E-30 191.1 6.3 147 77-226 2-182 (266)
21 1oxx_K GLCV, glucose, ABC tran 99.9 1.8E-25 6.1E-30 199.7 5.1 147 76-227 2-185 (353)
22 2ihy_A ABC transporter, ATP-bi 99.9 3.9E-25 1.3E-29 191.6 6.0 94 76-176 20-124 (279)
23 2ff7_A Alpha-hemolysin translo 99.9 8.5E-25 2.9E-29 186.3 7.8 143 77-227 7-190 (247)
24 1mv5_A LMRA, multidrug resista 99.9 2.7E-25 9.4E-30 188.7 4.1 144 77-227 1-184 (243)
25 2d2e_A SUFC protein; ABC-ATPas 99.9 9.8E-25 3.3E-29 186.1 6.8 93 76-175 2-104 (250)
26 3d31_A Sulfate/molybdate ABC t 99.9 1.3E-24 4.6E-29 193.6 6.2 142 77-226 1-171 (348)
27 2onk_A Molybdate/tungstate ABC 99.9 1.2E-24 4.2E-29 184.6 4.9 90 77-176 1-95 (240)
28 2cbz_A Multidrug resistance-as 99.9 1.4E-24 4.7E-29 183.9 5.2 85 76-176 2-90 (237)
29 3nh6_A ATP-binding cassette SU 99.9 1.5E-24 5.2E-29 190.2 5.2 145 77-227 53-235 (306)
30 2nq2_C Hypothetical ABC transp 99.9 3.2E-24 1.1E-28 183.4 6.7 85 76-176 3-91 (253)
31 2pze_A Cystic fibrosis transme 99.9 3.6E-24 1.2E-28 180.4 6.0 135 76-224 5-172 (229)
32 2ghi_A Transport protein; mult 99.9 6.9E-24 2.4E-28 181.9 6.7 147 76-227 16-200 (260)
33 2zu0_C Probable ATP-dependent 99.9 5.5E-24 1.9E-28 183.2 5.6 93 75-174 18-120 (267)
34 2qi9_C Vitamin B12 import ATP- 99.9 2.5E-23 8.7E-28 177.5 5.6 89 76-176 3-98 (249)
35 3gd7_A Fusion complex of cysti 99.9 4.8E-23 1.6E-27 186.1 5.1 144 76-227 18-200 (390)
36 3b5x_A Lipid A export ATP-bind 99.9 8E-22 2.7E-26 186.3 10.3 95 77-176 341-441 (582)
37 2pjz_A Hypothetical protein ST 99.8 2.3E-22 7.7E-27 172.9 4.3 90 77-175 1-97 (263)
38 3b60_A Lipid A export ATP-bind 99.8 6.9E-22 2.4E-26 186.7 6.1 95 77-176 341-441 (582)
39 2yl4_A ATP-binding cassette SU 99.8 6.4E-22 2.2E-26 187.4 5.8 95 78-176 342-442 (595)
40 4a82_A Cystic fibrosis transme 99.8 7.6E-22 2.6E-26 186.3 4.8 95 77-176 339-439 (578)
41 3qf4_B Uncharacterized ABC tra 99.8 1E-21 3.6E-26 186.1 5.4 144 77-227 354-536 (598)
42 3qf4_A ABC transporter, ATP-bi 99.8 1.2E-21 4.2E-26 185.3 5.4 145 77-227 341-524 (587)
43 2bbs_A Cystic fibrosis transme 99.8 1.2E-21 4.1E-26 170.6 2.7 130 76-224 39-201 (290)
44 4f4c_A Multidrug resistance pr 99.8 5.2E-20 1.8E-24 187.7 5.7 147 77-227 1076-1262(1321)
45 3g5u_A MCG1178, multidrug resi 99.8 1.4E-19 4.9E-24 184.1 6.0 96 77-176 1030-1131(1284)
46 3g5u_A MCG1178, multidrug resi 99.8 1.1E-19 3.8E-24 184.9 5.1 95 77-176 387-488 (1284)
47 4f4c_A Multidrug resistance pr 99.7 1.1E-18 3.9E-23 177.9 8.6 145 77-227 415-599 (1321)
48 3ozx_A RNAse L inhibitor; ATP 99.7 8.2E-19 2.8E-23 164.4 5.5 87 74-174 266-353 (538)
49 3bk7_A ABC transporter ATP-bin 99.7 1.3E-18 4.5E-23 165.1 5.5 145 76-227 82-273 (607)
50 3bk7_A ABC transporter ATP-bin 99.7 1.5E-18 5.1E-23 164.7 5.7 136 75-227 355-516 (607)
51 1yqt_A RNAse L inhibitor; ATP- 99.7 1.7E-18 5.8E-23 162.3 5.5 59 74-140 284-342 (538)
52 1yqt_A RNAse L inhibitor; ATP- 99.7 2.4E-18 8.3E-23 161.2 5.6 56 78-140 21-77 (538)
53 2iw3_A Elongation factor 3A; a 99.6 8.1E-17 2.8E-21 159.0 6.3 65 75-144 669-734 (986)
54 3ux8_A Excinuclease ABC, A sub 99.6 1.5E-16 5E-21 152.5 4.0 41 96-139 33-94 (670)
55 3b85_A Phosphate starvation-in 99.6 9.9E-18 3.4E-22 139.1 -4.3 44 85-140 8-51 (208)
56 3j16_B RLI1P; ribosome recycli 99.6 2.8E-16 9.5E-21 149.1 4.4 132 81-227 350-512 (608)
57 2iw3_A Elongation factor 3A; a 99.6 3.8E-16 1.3E-20 154.2 5.0 49 77-129 435-483 (986)
58 3c8u_A Fructokinase; YP_612366 99.6 1E-16 3.5E-21 132.0 0.6 122 104-228 19-151 (208)
59 3j16_B RLI1P; ribosome recycli 99.6 7.4E-16 2.5E-20 146.2 5.9 139 82-227 82-266 (608)
60 3aez_A Pantothenate kinase; tr 99.6 3.6E-17 1.2E-21 143.6 -4.7 131 75-214 41-208 (312)
61 3ozx_A RNAse L inhibitor; ATP 99.5 2.3E-15 7.9E-20 141.0 4.9 52 81-140 3-55 (538)
62 2npi_A Protein CLP1; CLP1-PCF1 99.5 1.7E-17 5.7E-22 152.8 -10.0 82 75-176 116-206 (460)
63 4gp7_A Metallophosphoesterase; 99.5 4.7E-15 1.6E-19 118.6 3.1 101 99-216 1-117 (171)
64 1htw_A HI0065; nucleotide-bind 99.5 1.4E-16 4.6E-21 126.9 -6.0 88 78-174 8-97 (158)
65 1sq5_A Pantothenate kinase; P- 99.5 6.6E-16 2.3E-20 134.9 -3.1 131 77-214 37-198 (308)
66 1znw_A Guanylate kinase, GMP k 99.4 6.1E-15 2.1E-19 121.2 -0.2 35 96-132 11-45 (207)
67 3ux8_A Excinuclease ABC, A sub 99.4 3.6E-14 1.2E-18 135.9 3.8 33 96-128 337-369 (670)
68 3b9q_A Chloroplast SRP recepto 99.4 6.6E-14 2.3E-18 122.2 4.8 76 97-175 90-179 (302)
69 3tqc_A Pantothenate kinase; bi 99.4 3.2E-15 1.1E-19 131.7 -4.4 141 83-228 66-230 (321)
70 2jeo_A Uridine-cytidine kinase 99.4 1.3E-13 4.3E-18 116.2 4.5 37 96-132 14-50 (245)
71 1tq4_A IIGP1, interferon-induc 99.4 7.7E-15 2.6E-19 133.3 -5.2 49 96-147 38-107 (413)
72 2pt7_A CAG-ALFA; ATPase, prote 99.4 1.3E-14 4.4E-19 128.1 -4.1 48 96-146 160-208 (330)
73 2og2_A Putative signal recogni 99.4 3.2E-13 1.1E-17 120.5 4.7 75 98-175 148-236 (359)
74 2dpy_A FLII, flagellum-specifi 99.3 1.6E-13 5.6E-18 125.5 1.4 141 76-227 130-293 (438)
75 4aby_A DNA repair protein RECN 99.3 5.4E-13 1.8E-17 120.0 3.6 36 96-132 50-85 (415)
76 2obl_A ESCN; ATPase, hydrolase 99.3 4.5E-13 1.5E-17 119.1 2.8 65 76-148 44-110 (347)
77 3szr_A Interferon-induced GTP- 99.3 8.7E-14 3E-18 132.0 -2.5 92 77-176 10-122 (608)
78 2vf7_A UVRA2, excinuclease ABC 99.3 1.7E-12 5.8E-17 126.9 6.5 48 75-131 500-548 (842)
79 1tf7_A KAIC; homohexamer, hexa 99.3 3.9E-13 1.3E-17 125.3 1.2 66 75-147 10-79 (525)
80 3sop_A Neuronal-specific septi 99.3 1.1E-13 3.6E-18 119.1 -3.3 67 109-178 4-74 (270)
81 2eyu_A Twitching motility prot 99.3 5.6E-13 1.9E-17 114.0 0.9 58 77-147 5-64 (261)
82 2v9p_A Replication protein E1; 99.2 2.3E-13 8E-18 118.9 -2.5 50 77-131 101-150 (305)
83 2ehv_A Hypothetical protein PH 99.2 7E-13 2.4E-17 110.4 -0.3 60 77-146 6-69 (251)
84 2r6f_A Excinuclease ABC subuni 99.2 1.1E-11 3.8E-16 122.0 8.1 44 76-128 628-671 (972)
85 3asz_A Uridine kinase; cytidin 99.2 5.3E-12 1.8E-16 103.2 4.7 109 104-217 3-121 (211)
86 2ygr_A Uvrabc system protein A 99.2 1.8E-11 6E-16 120.9 8.9 44 76-128 646-689 (993)
87 3e70_C DPA, signal recognition 99.2 3.2E-12 1.1E-16 112.8 3.1 118 103-225 125-261 (328)
88 2qnr_A Septin-2, protein NEDD5 99.2 8.2E-13 2.8E-17 115.1 -1.0 53 81-146 2-55 (301)
89 3euj_A Chromosome partition pr 99.2 1E-11 3.6E-16 114.6 6.3 48 96-147 19-67 (483)
90 2o8b_B DNA mismatch repair pro 99.2 1.7E-12 5.8E-17 129.4 0.9 52 76-132 749-813 (1022)
91 2yhs_A FTSY, cell division pro 99.2 1.3E-11 4.3E-16 114.2 5.4 77 97-176 283-372 (503)
92 2qm8_A GTPase/ATPase; G protei 99.2 5.5E-13 1.9E-17 118.0 -4.5 65 76-147 28-93 (337)
93 1z6g_A Guanylate kinase; struc 99.2 1.2E-11 4E-16 102.7 3.3 36 96-131 12-47 (218)
94 1s96_A Guanylate kinase, GMP k 99.1 5.6E-12 1.9E-16 105.1 0.9 62 99-164 8-72 (219)
95 1rj9_A FTSY, signal recognitio 99.1 3.9E-11 1.3E-15 104.8 6.0 67 106-175 101-180 (304)
96 2qag_C Septin-7; cell cycle, c 99.1 2.1E-12 7.1E-17 117.5 -2.9 51 76-139 10-60 (418)
97 3jvv_A Twitching mobility prot 99.1 8.2E-12 2.8E-16 111.3 0.3 55 82-141 93-155 (356)
98 2ga8_A Hypothetical 39.9 kDa p 99.1 1.2E-11 4.2E-16 109.9 0.7 76 151-226 181-285 (359)
99 2gza_A Type IV secretion syste 99.1 6.3E-12 2.1E-16 112.1 -1.5 64 79-145 137-211 (361)
100 4a74_A DNA repair and recombin 99.1 1.2E-11 4E-16 101.7 0.0 30 103-132 21-50 (231)
101 1ye8_A Protein THEP1, hypothet 99.1 3.3E-12 1.1E-16 103.1 -4.0 24 109-132 2-25 (178)
102 1ewq_A DNA mismatch repair pro 99.0 3.3E-11 1.1E-15 117.0 1.8 70 95-176 567-636 (765)
103 3pih_A Uvrabc system protein A 99.0 1E-10 3.4E-15 115.3 4.7 29 96-124 599-627 (916)
104 1pui_A ENGB, probable GTP-bind 99.0 2.4E-11 8.1E-16 98.6 -0.1 54 77-140 3-61 (210)
105 1cr0_A DNA primase/helicase; R 99.0 4.4E-10 1.5E-14 96.7 7.3 41 96-139 24-64 (296)
106 3lnc_A Guanylate kinase, GMP k 99.0 1.3E-10 4.5E-15 96.5 3.1 37 96-132 16-53 (231)
107 1e69_A Chromosome segregation 99.0 4.5E-10 1.5E-14 98.3 6.2 32 99-131 17-48 (322)
108 3nwj_A ATSK2; P loop, shikimat 99.0 6E-11 2.1E-15 100.8 0.5 53 76-132 16-73 (250)
109 2w0m_A SSO2452; RECA, SSPF, un 99.0 8.1E-11 2.8E-15 96.5 0.4 46 96-144 11-58 (235)
110 2ewv_A Twitching motility prot 98.9 1.7E-10 5.9E-15 103.2 1.1 45 97-146 128-174 (372)
111 3tr0_A Guanylate kinase, GMP k 98.9 6E-10 2E-14 90.1 4.1 32 101-132 1-32 (205)
112 2qag_B Septin-6, protein NEDD5 98.9 1.2E-10 4.1E-15 106.0 -0.1 49 77-131 16-66 (427)
113 1wb9_A DNA mismatch repair pro 98.9 3.6E-10 1.2E-14 110.2 3.1 36 96-132 597-632 (800)
114 1tf7_A KAIC; homohexamer, hexa 98.9 2.5E-10 8.7E-15 106.3 0.6 132 77-226 257-401 (525)
115 1p9r_A General secretion pathw 98.8 2.3E-10 7.7E-15 104.1 -0.7 61 77-146 143-204 (418)
116 1zp6_A Hypothetical protein AT 98.8 2.3E-09 7.8E-14 85.8 4.8 67 103-174 5-74 (191)
117 1qhl_A Protein (cell division 98.8 1.4E-10 4.8E-15 97.3 -2.5 56 77-147 9-65 (227)
118 3thx_B DNA mismatch repair pro 98.8 2.7E-10 9.1E-15 112.4 -1.0 37 95-131 661-697 (918)
119 1odf_A YGR205W, hypothetical 3 98.8 3.8E-10 1.3E-14 97.8 0.0 109 104-217 28-169 (290)
120 1nlf_A Regulatory protein REPA 98.8 4.4E-09 1.5E-13 89.8 6.3 30 103-132 26-55 (279)
121 3kta_A Chromosome segregation 98.8 7.7E-09 2.6E-13 82.3 6.9 39 98-140 18-56 (182)
122 1in4_A RUVB, holliday junction 98.8 8.2E-11 2.8E-15 103.4 -5.7 143 77-227 18-191 (334)
123 3thx_A DNA mismatch repair pro 98.8 1.2E-09 4E-14 108.1 1.9 35 95-129 650-684 (934)
124 1pzn_A RAD51, DNA repair and r 98.8 4.9E-10 1.7E-14 99.4 -1.7 48 96-146 119-175 (349)
125 1lw7_A Transcriptional regulat 98.7 2.7E-09 9.3E-14 94.8 2.7 39 97-138 158-198 (365)
126 2kjq_A DNAA-related protein; s 98.7 7.3E-09 2.5E-13 81.0 4.8 32 96-132 30-61 (149)
127 3ec2_A DNA replication protein 98.7 2.2E-09 7.5E-14 85.5 1.8 36 101-139 32-67 (180)
128 2oap_1 GSPE-2, type II secreti 98.7 1.6E-09 5.4E-14 100.8 0.9 47 96-145 249-296 (511)
129 2j41_A Guanylate kinase; GMP, 98.7 1.1E-08 3.7E-13 82.6 3.9 35 102-139 1-35 (207)
130 3uie_A Adenylyl-sulfate kinase 98.7 5.9E-09 2E-13 84.6 2.3 48 81-132 3-50 (200)
131 1lvg_A Guanylate kinase, GMP k 98.7 1E-08 3.4E-13 83.5 3.4 28 105-132 2-29 (198)
132 2bdt_A BH3686; alpha-beta prot 98.6 8.6E-09 2.9E-13 82.6 2.6 62 107-175 2-65 (189)
133 3a00_A Guanylate kinase, GMP k 98.6 9.3E-09 3.2E-13 82.6 2.6 26 107-132 1-26 (186)
134 1u0l_A Probable GTPase ENGC; p 98.6 8.5E-09 2.9E-13 89.5 1.5 43 102-147 164-210 (301)
135 3vaa_A Shikimate kinase, SK; s 98.6 2.7E-08 9.2E-13 80.7 4.2 37 96-132 14-50 (199)
136 2cvh_A DNA repair and recombin 98.6 7.3E-08 2.5E-12 78.3 6.2 45 96-145 8-54 (220)
137 2i3b_A HCR-ntpase, human cance 98.6 2.6E-08 8.8E-13 81.0 3.2 26 107-132 1-26 (189)
138 2o5v_A DNA replication and rep 98.6 5.5E-08 1.9E-12 86.6 5.6 34 96-130 16-49 (359)
139 2x8a_A Nuclear valosin-contain 98.5 3.2E-08 1.1E-12 84.7 2.4 44 96-146 35-79 (274)
140 1kgd_A CASK, peripheral plasma 98.5 6.8E-08 2.3E-12 77.2 4.0 27 106-132 4-30 (180)
141 2yv5_A YJEQ protein; hydrolase 98.5 4.5E-08 1.5E-12 85.0 2.8 42 102-147 160-205 (302)
142 1ls1_A Signal recognition part 98.5 7.5E-08 2.6E-12 83.4 4.2 59 78-147 77-136 (295)
143 1t9h_A YLOQ, probable GTPase E 98.5 1.5E-08 5E-13 88.5 -0.6 42 102-146 168-213 (307)
144 4eun_A Thermoresistant glucoki 98.5 1E-07 3.5E-12 77.2 4.2 31 101-131 23-53 (200)
145 1ixz_A ATP-dependent metallopr 98.4 1.3E-08 4.5E-13 85.3 -1.7 48 79-132 27-74 (254)
146 1w1w_A Structural maintenance 98.4 1.5E-07 5.3E-12 85.2 5.1 45 78-132 7-51 (430)
147 1iy2_A ATP-dependent metallopr 98.4 1.6E-08 5.4E-13 86.2 -1.7 48 79-132 51-98 (278)
148 2f1r_A Molybdopterin-guanine d 98.4 7E-08 2.4E-12 77.3 1.5 36 108-146 3-42 (171)
149 1svm_A Large T antigen; AAA+ f 98.4 1E-07 3.5E-12 85.4 2.7 37 96-132 158-194 (377)
150 2bbw_A Adenylate kinase 4, AK4 98.4 8E-08 2.8E-12 80.3 1.6 32 106-140 26-60 (246)
151 3tau_A Guanylate kinase, GMP k 98.4 2.3E-07 7.7E-12 75.9 4.0 28 105-132 6-33 (208)
152 1rz3_A Hypothetical protein rb 98.4 1.4E-07 4.8E-12 76.6 2.7 40 103-145 18-58 (201)
153 3qf7_A RAD50; ABC-ATPase, ATPa 98.3 3E-07 1E-11 81.8 4.8 36 96-132 13-48 (365)
154 1n0w_A DNA repair protein RAD5 98.3 3.5E-07 1.2E-11 75.4 4.7 41 103-146 20-68 (243)
155 4e22_A Cytidylate kinase; P-lo 98.3 1.2E-07 4E-12 80.0 1.7 33 105-140 25-60 (252)
156 1zu4_A FTSY; GTPase, signal re 98.3 2.2E-07 7.7E-12 81.4 3.5 46 98-146 96-142 (320)
157 2p67_A LAO/AO transport system 98.3 2.6E-08 9E-13 87.8 -3.3 56 77-139 30-85 (341)
158 3cr8_A Sulfate adenylyltranfer 98.3 3.8E-07 1.3E-11 85.5 3.8 42 103-147 365-409 (552)
159 1knq_A Gluconate kinase; ALFA/ 98.3 5.5E-07 1.9E-11 70.9 3.9 27 105-131 6-32 (175)
160 2vp4_A Deoxynucleoside kinase; 98.3 2.1E-07 7.1E-12 77.3 1.4 31 100-130 13-43 (230)
161 2rcn_A Probable GTPase ENGC; Y 98.3 1.6E-07 5.6E-12 83.5 0.8 46 97-145 206-253 (358)
162 2px0_A Flagellar biosynthesis 98.2 1.5E-06 5.2E-11 75.2 6.8 32 105-139 103-134 (296)
163 1vma_A Cell division protein F 98.2 4.4E-07 1.5E-11 79.1 3.1 45 99-146 96-141 (306)
164 1kag_A SKI, shikimate kinase I 98.2 6.3E-07 2.2E-11 70.2 3.6 27 106-132 3-29 (173)
165 1nij_A Hypothetical protein YJ 98.2 3.1E-07 1E-11 80.2 1.9 35 108-145 5-48 (318)
166 1udx_A The GTP-binding protein 98.2 2.7E-07 9.4E-12 83.7 1.5 35 97-131 147-181 (416)
167 3ney_A 55 kDa erythrocyte memb 98.2 8.7E-07 3E-11 72.5 4.0 32 101-132 13-44 (197)
168 1ni3_A YCHF GTPase, YCHF GTP-b 98.2 8.9E-07 3.1E-11 79.7 4.0 40 103-145 16-68 (392)
169 3ice_A Transcription terminati 98.1 7.3E-07 2.5E-11 80.1 2.4 53 77-132 133-199 (422)
170 1f2t_A RAD50 ABC-ATPase; DNA d 98.1 2.1E-06 7.2E-11 66.8 4.5 32 99-131 16-47 (149)
171 2qt1_A Nicotinamide riboside k 98.1 1.4E-06 4.6E-11 70.7 2.7 33 99-131 13-45 (207)
172 1sxj_E Activator 1 40 kDa subu 98.1 4.7E-06 1.6E-10 72.6 6.2 35 109-146 38-74 (354)
173 1oix_A RAS-related protein RAB 98.0 2.3E-06 7.9E-11 68.4 3.5 24 109-132 31-54 (191)
174 1cke_A CK, MSSA, protein (cyti 98.0 1.9E-06 6.4E-11 70.5 2.9 34 107-140 5-38 (227)
175 3m6a_A ATP-dependent protease 98.0 4E-07 1.4E-11 85.1 -1.5 55 78-140 84-138 (543)
176 4eaq_A DTMP kinase, thymidylat 98.0 4.3E-06 1.5E-10 69.5 4.8 37 96-132 12-51 (229)
177 3k1j_A LON protease, ATP-depen 98.0 1.7E-06 5.8E-11 81.7 2.0 58 81-145 38-97 (604)
178 2pez_A Bifunctional 3'-phospho 98.0 4E-06 1.4E-10 66.3 3.4 28 105-132 3-30 (179)
179 2dr3_A UPF0273 protein PH0284; 97.9 6.3E-06 2.1E-10 67.8 3.8 48 96-146 11-61 (247)
180 2www_A Methylmalonic aciduria 97.9 5.2E-06 1.8E-10 73.4 3.4 33 105-140 72-104 (349)
181 4ad8_A DNA repair protein RECN 97.9 3.5E-06 1.2E-10 78.1 2.1 35 96-131 50-84 (517)
182 3lda_A DNA repair protein RAD5 97.9 6.3E-06 2.2E-10 74.3 3.5 41 103-146 174-222 (400)
183 1sxj_C Activator 1 40 kDa subu 97.8 1.9E-06 6.4E-11 75.3 -0.3 51 82-139 23-75 (340)
184 3qks_A DNA double-strand break 97.8 1.3E-05 4.3E-10 65.4 4.5 33 99-132 16-48 (203)
185 2f9l_A RAB11B, member RAS onco 97.8 9.4E-06 3.2E-10 65.0 3.5 23 109-131 7-29 (199)
186 1y63_A LMAJ004144AAA protein; 97.8 1E-05 3.5E-10 64.5 3.6 32 99-130 2-33 (184)
187 1m7g_A Adenylylsulfate kinase; 97.8 6E-06 2.1E-10 67.2 2.3 35 102-139 20-54 (211)
188 1jjv_A Dephospho-COA kinase; P 97.8 8.5E-06 2.9E-10 65.7 3.0 21 109-129 4-24 (206)
189 2qor_A Guanylate kinase; phosp 97.8 1E-05 3.6E-10 65.4 3.5 30 103-132 8-37 (204)
190 3qkt_A DNA double-strand break 97.8 1.2E-05 4.2E-10 70.5 4.2 30 99-129 16-45 (339)
191 2dhr_A FTSH; AAA+ protein, hex 97.8 2E-06 6.8E-11 79.7 -1.0 47 80-132 43-89 (499)
192 2if2_A Dephospho-COA kinase; a 97.8 1.1E-05 3.9E-10 64.8 3.3 21 109-129 3-23 (204)
193 2yvu_A Probable adenylyl-sulfa 97.7 1.5E-05 5.2E-10 63.3 3.5 36 101-139 7-42 (186)
194 2ffh_A Protein (FFH); SRP54, s 97.7 1.8E-05 6.3E-10 71.8 4.4 55 81-146 80-135 (425)
195 1j8m_F SRP54, signal recogniti 97.7 1.2E-05 4.1E-10 69.6 2.7 57 80-146 77-135 (297)
196 1uj2_A Uridine-cytidine kinase 97.7 2E-05 7E-10 65.9 3.9 27 106-132 21-47 (252)
197 2gj8_A MNME, tRNA modification 97.7 1.9E-05 6.6E-10 61.9 2.8 26 106-131 3-28 (172)
198 3t61_A Gluconokinase; PSI-biol 97.6 2.7E-05 9.2E-10 62.6 3.6 26 107-132 18-43 (202)
199 3t34_A Dynamin-related protein 97.6 2E-05 6.9E-10 69.5 3.1 45 81-129 12-56 (360)
200 2qag_A Septin-2, protein NEDD5 97.6 5E-06 1.7E-10 73.8 -1.5 45 77-131 17-61 (361)
201 1q3t_A Cytidylate kinase; nucl 97.6 4.1E-05 1.4E-09 63.3 4.2 29 104-132 13-41 (236)
202 2zr9_A Protein RECA, recombina 97.6 7.5E-05 2.5E-09 66.0 6.1 40 103-145 57-98 (349)
203 3cm0_A Adenylate kinase; ATP-b 97.6 3.5E-05 1.2E-09 60.8 3.5 28 105-132 2-29 (186)
204 3hr8_A Protein RECA; alpha and 97.6 3.6E-05 1.2E-09 68.3 3.7 41 103-146 57-99 (356)
205 1ega_A Protein (GTP-binding pr 97.6 2.2E-05 7.7E-10 67.7 2.1 26 106-131 7-32 (301)
206 1m2o_B GTP-binding protein SAR 97.5 4.4E-05 1.5E-09 60.7 3.4 33 96-129 13-45 (190)
207 1lv7_A FTSH; alpha/beta domain 97.5 5.3E-05 1.8E-09 63.2 3.4 34 97-132 37-70 (257)
208 3kb2_A SPBC2 prophage-derived 97.5 6.9E-05 2.3E-09 58.0 3.8 24 109-132 3-26 (173)
209 2wji_A Ferrous iron transport 97.5 4.6E-05 1.6E-09 59.0 2.7 24 108-131 4-27 (165)
210 1np6_A Molybdopterin-guanine d 97.4 7.6E-05 2.6E-09 59.6 3.7 26 107-132 6-31 (174)
211 1f6b_A SAR1; gtpases, N-termin 97.4 1.6E-05 5.4E-10 63.8 -0.5 42 84-129 6-47 (198)
212 2p5t_B PEZT; postsegregational 97.4 5.7E-05 1.9E-09 63.3 2.6 30 103-132 28-57 (253)
213 3auy_A DNA double-strand break 97.4 8.5E-05 2.9E-09 65.9 3.7 32 97-129 16-47 (371)
214 2wjg_A FEOB, ferrous iron tran 97.4 8.1E-05 2.8E-09 58.3 3.0 23 108-130 8-30 (188)
215 1qhx_A CPT, protein (chloramph 97.4 0.00013 4.4E-09 57.1 4.1 26 107-132 3-28 (178)
216 1kht_A Adenylate kinase; phosp 97.3 0.00014 4.9E-09 57.1 4.0 26 107-132 3-28 (192)
217 2ohf_A Protein OLA1, GTP-bindi 97.3 9.1E-05 3.1E-09 66.6 3.1 28 103-130 18-45 (396)
218 2rhm_A Putative kinase; P-loop 97.3 0.00013 4.5E-09 57.6 3.8 28 105-132 3-30 (193)
219 2jaq_A Deoxyguanosine kinase; 97.3 0.00014 4.7E-09 57.9 3.9 24 109-132 2-25 (205)
220 1vht_A Dephospho-COA kinase; s 97.3 0.00013 4.5E-09 59.2 3.8 24 106-129 3-26 (218)
221 3lw7_A Adenylate kinase relate 97.3 0.00013 4.4E-09 56.2 3.2 20 108-127 2-21 (179)
222 2ze6_A Isopentenyl transferase 97.3 0.00015 5.2E-09 60.9 3.8 24 109-132 3-26 (253)
223 3r20_A Cytidylate kinase; stru 97.3 0.00016 5.4E-09 60.5 3.8 27 106-132 8-34 (233)
224 1via_A Shikimate kinase; struc 97.3 0.00014 4.7E-09 57.0 3.3 24 109-132 6-29 (175)
225 2zej_A Dardarin, leucine-rich 97.3 9.4E-05 3.2E-09 58.3 2.3 23 109-131 4-26 (184)
226 1ypw_A Transitional endoplasmi 97.3 0.00011 3.8E-09 71.7 3.2 32 101-132 232-263 (806)
227 1gtv_A TMK, thymidylate kinase 97.2 7.8E-05 2.7E-09 60.0 1.5 24 109-132 2-25 (214)
228 2v54_A DTMP kinase, thymidylat 97.2 0.00019 6.6E-09 57.2 3.8 27 105-131 2-28 (204)
229 3iij_A Coilin-interacting nucl 97.2 0.00015 5.1E-09 57.0 3.1 28 105-132 9-36 (180)
230 2vf7_A UVRA2, excinuclease ABC 97.2 0.00018 6.3E-09 70.4 3.9 40 76-124 14-53 (842)
231 2plr_A DTMP kinase, probable t 97.2 0.00024 8.3E-09 56.7 4.1 27 106-132 3-29 (213)
232 2c95_A Adenylate kinase 1; tra 97.2 0.00025 8.6E-09 56.1 4.0 28 105-132 7-34 (196)
233 1uf9_A TT1252 protein; P-loop, 97.2 0.00021 7.2E-09 56.9 3.5 24 107-130 8-31 (203)
234 3trf_A Shikimate kinase, SK; a 97.2 0.00027 9.4E-09 55.6 4.0 26 107-132 5-30 (185)
235 3lxx_A GTPase IMAP family memb 97.2 0.00019 6.5E-09 59.2 3.1 24 109-132 31-54 (239)
236 2dy1_A Elongation factor G; tr 97.2 0.0002 7E-09 68.4 3.6 32 101-132 3-34 (665)
237 1ly1_A Polynucleotide kinase; 97.2 0.00023 7.9E-09 55.4 3.4 22 108-129 3-24 (181)
238 3cf0_A Transitional endoplasmi 97.2 0.00022 7.4E-09 61.2 3.5 31 102-132 44-74 (301)
239 1tev_A UMP-CMP kinase; ploop, 97.2 0.00028 9.7E-09 55.5 3.9 27 106-132 2-28 (196)
240 2wwf_A Thymidilate kinase, put 97.1 0.00029 9.8E-09 56.5 3.9 28 105-132 8-35 (212)
241 1xjc_A MOBB protein homolog; s 97.1 0.00027 9.2E-09 56.2 3.6 25 108-132 5-29 (169)
242 2r6a_A DNAB helicase, replicat 97.1 0.00013 4.4E-09 66.5 1.8 42 95-139 191-232 (454)
243 3ake_A Cytidylate kinase; CMP 97.1 0.00029 9.9E-09 56.3 3.7 24 109-132 4-27 (208)
244 2bwj_A Adenylate kinase 5; pho 97.1 0.00013 4.5E-09 57.9 1.6 30 103-132 8-37 (199)
245 1nn5_A Similar to deoxythymidy 97.1 0.00033 1.1E-08 56.2 4.0 29 104-132 6-34 (215)
246 2vli_A Antibiotic resistance p 97.1 0.00024 8.3E-09 55.6 3.0 27 106-132 4-30 (183)
247 1ex7_A Guanylate kinase; subst 97.1 0.00028 9.7E-09 56.9 3.4 23 110-132 4-26 (186)
248 4ag6_A VIRB4 ATPase, type IV s 97.1 0.00038 1.3E-08 61.8 4.5 32 106-140 34-65 (392)
249 3k53_A Ferrous iron transport 97.1 0.00024 8.3E-09 59.9 2.7 23 109-131 5-27 (271)
250 1gvn_B Zeta; postsegregational 97.0 0.00034 1.2E-08 59.9 3.6 28 104-131 30-57 (287)
251 1aky_A Adenylate kinase; ATP:A 97.0 0.00046 1.6E-08 56.1 4.2 27 106-132 3-29 (220)
252 1nks_A Adenylate kinase; therm 97.0 0.00037 1.3E-08 54.7 3.6 24 109-132 3-26 (194)
253 2ce7_A Cell division protein F 97.0 0.00025 8.7E-09 65.2 2.8 35 96-132 40-74 (476)
254 2z0h_A DTMP kinase, thymidylat 97.0 0.00044 1.5E-08 54.7 3.7 24 109-132 2-25 (197)
255 1mky_A Probable GTP-binding pr 97.0 0.0003 1E-08 63.7 3.0 23 109-131 182-204 (439)
256 2r6f_A Excinuclease ABC subuni 97.0 0.00037 1.3E-08 69.0 3.7 29 96-124 33-61 (972)
257 2ygr_A Uvrabc system protein A 97.0 0.00037 1.3E-08 69.2 3.7 29 96-124 35-63 (993)
258 2cdn_A Adenylate kinase; phosp 97.0 0.00057 2E-08 54.6 4.2 27 106-132 19-45 (201)
259 2qtf_A Protein HFLX, GTP-bindi 96.9 0.0003 1E-08 62.4 2.5 26 107-132 178-204 (364)
260 3kl4_A SRP54, signal recogniti 96.9 0.00039 1.3E-08 63.2 3.3 32 106-140 96-127 (433)
261 1zd8_A GTP:AMP phosphotransfer 96.9 0.0005 1.7E-08 56.2 3.6 28 105-132 5-32 (227)
262 3pih_A Uvrabc system protein A 96.9 0.00034 1.2E-08 69.1 2.9 29 96-124 13-41 (916)
263 2ged_A SR-beta, signal recogni 96.9 0.00057 1.9E-08 53.7 3.5 25 107-131 48-72 (193)
264 4fcw_A Chaperone protein CLPB; 96.9 0.00064 2.2E-08 57.7 4.1 29 108-139 48-76 (311)
265 1zak_A Adenylate kinase; ATP:A 96.9 0.00055 1.9E-08 55.7 3.4 27 106-132 4-30 (222)
266 3llm_A ATP-dependent RNA helic 96.9 0.00039 1.3E-08 57.3 2.6 27 103-129 72-98 (235)
267 1qf9_A UMP/CMP kinase, protein 96.9 0.00065 2.2E-08 53.3 3.8 26 107-132 6-31 (194)
268 3fb4_A Adenylate kinase; psych 96.9 0.00064 2.2E-08 54.9 3.7 24 109-132 2-25 (216)
269 2pbr_A DTMP kinase, thymidylat 96.9 0.00067 2.3E-08 53.4 3.7 24 109-132 2-25 (195)
270 2ius_A DNA translocase FTSK; n 96.9 0.00053 1.8E-08 63.6 3.5 31 99-129 159-189 (512)
271 1ukz_A Uridylate kinase; trans 96.9 0.00072 2.5E-08 54.0 3.8 27 105-131 13-39 (203)
272 2iyv_A Shikimate kinase, SK; t 96.9 0.00058 2E-08 53.7 3.2 25 108-132 3-27 (184)
273 1e6c_A Shikimate kinase; phosp 96.8 0.00061 2.1E-08 52.8 3.2 25 108-132 3-27 (173)
274 1z2a_A RAS-related protein RAB 96.8 0.0007 2.4E-08 51.5 3.5 23 109-131 7-29 (168)
275 1zuh_A Shikimate kinase; alpha 96.8 0.00083 2.8E-08 52.0 3.9 25 108-132 8-32 (168)
276 2pt5_A Shikimate kinase, SK; a 96.8 0.00083 2.8E-08 51.8 3.9 24 109-132 2-25 (168)
277 2dyk_A GTP-binding protein; GT 96.8 0.00078 2.7E-08 50.9 3.5 23 109-131 3-25 (161)
278 2ce2_X GTPase HRAS; signaling 96.8 0.00073 2.5E-08 51.0 3.3 23 109-131 5-27 (166)
279 1kao_A RAP2A; GTP-binding prot 96.8 0.00081 2.8E-08 50.8 3.5 22 109-130 5-26 (167)
280 1fnn_A CDC6P, cell division co 96.8 0.00096 3.3E-08 58.1 4.5 27 106-132 41-69 (389)
281 3dl0_A Adenylate kinase; phosp 96.8 0.00076 2.6E-08 54.5 3.5 24 109-132 2-25 (216)
282 1u8z_A RAS-related protein RAL 96.8 0.00084 2.9E-08 50.8 3.5 23 109-131 6-28 (168)
283 3b1v_A Ferrous iron uptake tra 96.8 0.00057 2E-08 58.1 2.8 24 108-131 4-27 (272)
284 3a4m_A L-seryl-tRNA(SEC) kinas 96.8 0.00078 2.7E-08 56.5 3.6 27 106-132 3-29 (260)
285 3bos_A Putative DNA replicatio 96.8 0.00098 3.3E-08 53.9 4.1 27 106-132 51-77 (242)
286 1z0j_A RAB-22, RAS-related pro 96.8 0.00088 3E-08 51.0 3.5 23 109-131 8-30 (170)
287 1z08_A RAS-related protein RAB 96.8 0.00089 3E-08 51.1 3.6 22 109-130 8-29 (170)
288 1jal_A YCHF protein; nucleotid 96.8 0.0011 3.9E-08 58.8 4.6 23 107-129 2-24 (363)
289 2qby_A CDC6 homolog 1, cell di 96.8 0.00076 2.6E-08 58.5 3.4 28 105-132 43-70 (386)
290 1ky3_A GTP-binding protein YPT 96.8 0.0009 3.1E-08 51.5 3.5 23 109-131 10-32 (182)
291 2lkc_A Translation initiation 96.8 0.00091 3.1E-08 51.5 3.5 25 106-130 7-31 (178)
292 1c1y_A RAS-related protein RAP 96.7 0.00094 3.2E-08 50.7 3.5 22 109-130 5-26 (167)
293 1ek0_A Protein (GTP-binding pr 96.7 0.00095 3.3E-08 50.7 3.5 23 109-131 5-27 (170)
294 3tlx_A Adenylate kinase 2; str 96.7 0.0011 3.7E-08 55.2 4.1 27 105-131 27-53 (243)
295 2erx_A GTP-binding protein DI- 96.7 0.0008 2.7E-08 51.2 3.0 22 109-130 5-26 (172)
296 1wms_A RAB-9, RAB9, RAS-relate 96.7 0.00098 3.4E-08 51.3 3.5 22 109-130 9-30 (177)
297 1g16_A RAS-related protein SEC 96.7 0.00089 3.1E-08 50.9 3.3 23 109-131 5-27 (170)
298 1a7j_A Phosphoribulokinase; tr 96.7 0.00058 2E-08 58.6 2.4 27 106-132 4-30 (290)
299 2nzj_A GTP-binding protein REM 96.7 0.00075 2.6E-08 51.7 2.8 23 109-131 6-28 (175)
300 1v5w_A DMC1, meiotic recombina 96.7 0.00098 3.3E-08 58.4 3.8 29 103-131 118-146 (343)
301 2fn4_A P23, RAS-related protei 96.7 0.00092 3.2E-08 51.4 3.3 22 109-130 11-32 (181)
302 3t1o_A Gliding protein MGLA; G 96.7 0.0011 3.6E-08 51.9 3.5 24 109-132 16-39 (198)
303 3be4_A Adenylate kinase; malar 96.7 0.0011 3.8E-08 53.9 3.7 27 106-132 4-30 (217)
304 1r2q_A RAS-related protein RAB 96.7 0.0011 3.8E-08 50.3 3.5 22 109-130 8-29 (170)
305 3clv_A RAB5 protein, putative; 96.7 0.0011 3.8E-08 51.7 3.5 23 108-130 8-30 (208)
306 3b9p_A CG5977-PA, isoform A; A 96.7 0.0013 4.3E-08 55.7 4.1 27 106-132 53-79 (297)
307 2oil_A CATX-8, RAS-related pro 96.7 0.0011 3.8E-08 52.0 3.5 23 109-131 27-49 (193)
308 3q85_A GTP-binding protein REM 96.7 0.00085 2.9E-08 51.2 2.7 22 109-130 4-25 (169)
309 4dsu_A GTPase KRAS, isoform 2B 96.7 0.0012 4E-08 51.3 3.5 23 109-131 6-28 (189)
310 3bc1_A RAS-related protein RAB 96.7 0.0011 3.9E-08 51.4 3.5 22 109-130 13-34 (195)
311 2xb4_A Adenylate kinase; ATP-b 96.7 0.0012 4.1E-08 54.0 3.8 24 109-132 2-25 (223)
312 3q72_A GTP-binding protein RAD 96.6 0.00061 2.1E-08 51.9 1.7 22 109-130 4-25 (166)
313 1fzq_A ADP-ribosylation factor 96.6 0.00061 2.1E-08 53.4 1.7 24 107-130 16-39 (181)
314 3pqc_A Probable GTP-binding pr 96.6 0.00084 2.9E-08 52.4 2.5 24 108-131 24-47 (195)
315 1svi_A GTP-binding protein YSX 96.6 0.00084 2.9E-08 52.7 2.5 25 106-130 22-46 (195)
316 2grj_A Dephospho-COA kinase; T 96.6 0.0013 4.5E-08 53.1 3.6 25 107-131 12-36 (192)
317 1upt_A ARL1, ADP-ribosylation 96.6 0.0014 4.9E-08 49.9 3.7 24 107-130 7-30 (171)
318 1r8s_A ADP-ribosylation factor 96.6 0.0013 4.6E-08 49.8 3.5 22 109-130 2-23 (164)
319 2a9k_A RAS-related protein RAL 96.6 0.0013 4.5E-08 50.8 3.5 24 108-131 19-42 (187)
320 1z0f_A RAB14, member RAS oncog 96.6 0.0013 4.6E-08 50.4 3.5 23 109-131 17-39 (179)
321 3lxw_A GTPase IMAP family memb 96.6 0.001 3.5E-08 55.4 3.0 24 108-131 22-45 (247)
322 2y8e_A RAB-protein 6, GH09086P 96.6 0.0013 4.3E-08 50.5 3.3 22 109-130 16-37 (179)
323 3con_A GTPase NRAS; structural 96.6 0.0014 4.6E-08 51.3 3.5 23 109-131 23-45 (190)
324 3umf_A Adenylate kinase; rossm 96.6 0.0014 4.9E-08 54.0 3.8 32 101-132 23-54 (217)
325 3ihw_A Centg3; RAS, centaurin, 96.6 0.0014 4.7E-08 51.6 3.6 22 109-130 22-43 (184)
326 2w58_A DNAI, primosome compone 96.6 0.0016 5.5E-08 51.9 4.0 25 108-132 55-79 (202)
327 2g6b_A RAS-related protein RAB 96.6 0.0014 4.8E-08 50.5 3.5 23 109-131 12-34 (180)
328 3tw8_B RAS-related protein RAB 96.6 0.00081 2.8E-08 51.7 2.1 22 109-130 11-32 (181)
329 1jbk_A CLPB protein; beta barr 96.5 0.0019 6.6E-08 49.8 4.1 28 105-132 41-68 (195)
330 2hxs_A RAB-26, RAS-related pro 96.5 0.0013 4.5E-08 50.6 3.1 22 109-130 8-29 (178)
331 2efe_B Small GTP-binding prote 96.5 0.0016 5.3E-08 50.3 3.6 22 109-130 14-35 (181)
332 3v9p_A DTMP kinase, thymidylat 96.5 0.0013 4.5E-08 54.6 3.3 29 104-132 22-50 (227)
333 2cxx_A Probable GTP-binding pr 96.5 0.00097 3.3E-08 51.9 2.4 23 109-131 3-25 (190)
334 1ak2_A Adenylate kinase isoenz 96.5 0.002 6.8E-08 52.9 4.3 27 106-132 15-41 (233)
335 2dby_A GTP-binding protein; GD 96.5 0.0013 4.3E-08 58.6 3.3 23 109-131 3-25 (368)
336 1e4v_A Adenylate kinase; trans 96.5 0.0015 5.2E-08 52.8 3.5 24 109-132 2-25 (214)
337 1vg8_A RAS-related protein RAB 96.5 0.0016 5.4E-08 51.6 3.5 23 109-131 10-32 (207)
338 1njg_A DNA polymerase III subu 96.5 0.00058 2E-08 54.7 1.0 24 109-132 47-70 (250)
339 2f6r_A COA synthase, bifunctio 96.5 0.0014 4.8E-08 55.8 3.4 24 106-129 74-97 (281)
340 2h92_A Cytidylate kinase; ross 96.5 0.0015 5E-08 52.8 3.4 26 107-132 3-28 (219)
341 2e87_A Hypothetical protein PH 96.5 0.00095 3.3E-08 58.7 2.4 26 106-131 166-191 (357)
342 2bme_A RAB4A, RAS-related prot 96.5 0.0015 5.1E-08 50.7 3.3 23 109-131 12-34 (186)
343 1nrj_B SR-beta, signal recogni 96.5 0.0016 5.3E-08 52.3 3.5 24 108-131 13-36 (218)
344 3kkq_A RAS-related protein M-R 96.5 0.0016 5.6E-08 50.4 3.5 22 109-130 20-41 (183)
345 1wf3_A GTP-binding protein; GT 96.5 0.0012 4.2E-08 56.8 3.0 22 109-130 9-30 (301)
346 1m7b_A RND3/RHOE small GTP-bin 96.5 0.0015 5.2E-08 51.0 3.3 22 109-130 9-30 (184)
347 3tkl_A RAS-related protein RAB 96.5 0.0016 5.6E-08 50.9 3.5 23 109-131 18-40 (196)
348 2bov_A RAla, RAS-related prote 96.5 0.0016 5.6E-08 51.3 3.5 23 109-131 16-38 (206)
349 3iby_A Ferrous iron transport 96.5 0.0012 4.1E-08 55.5 2.7 23 109-131 3-25 (256)
350 2gf9_A RAS-related protein RAB 96.5 0.0017 5.8E-08 50.8 3.5 23 109-131 24-46 (189)
351 2z43_A DNA repair and recombin 96.5 0.0017 5.8E-08 56.3 3.7 29 103-131 103-131 (324)
352 4edh_A DTMP kinase, thymidylat 96.5 0.002 6.7E-08 52.8 3.9 28 105-132 4-31 (213)
353 1mh1_A RAC1; GTP-binding, GTPa 96.5 0.0018 6.2E-08 50.1 3.5 22 109-130 7-28 (186)
354 2fg5_A RAB-22B, RAS-related pr 96.5 0.0017 5.7E-08 51.2 3.3 23 109-131 25-47 (192)
355 2cjw_A GTP-binding protein GEM 96.5 0.0018 6.1E-08 51.4 3.5 22 109-130 8-29 (192)
356 2gf0_A GTP-binding protein DI- 96.5 0.0017 5.8E-08 51.0 3.3 23 108-130 9-31 (199)
357 3iev_A GTP-binding protein ERA 96.4 0.0014 4.8E-08 56.5 3.0 23 108-130 11-33 (308)
358 3bwd_D RAC-like GTP-binding pr 96.4 0.0022 7.6E-08 49.4 3.9 24 107-130 8-31 (182)
359 1sxj_D Activator 1 41 kDa subu 96.4 0.001 3.5E-08 57.3 2.1 35 98-132 47-83 (353)
360 2wsm_A Hydrogenase expression/ 96.4 0.0017 5.9E-08 52.2 3.3 26 107-132 30-55 (221)
361 3t5g_A GTP-binding protein RHE 96.4 0.0018 6E-08 50.1 3.3 22 109-130 8-29 (181)
362 3h4m_A Proteasome-activating n 96.4 0.0022 7.5E-08 53.8 4.1 29 104-132 48-76 (285)
363 1moz_A ARL1, ADP-ribosylation 96.4 0.0011 3.7E-08 51.4 1.9 24 106-129 17-40 (183)
364 3oes_A GTPase rhebl1; small GT 96.4 0.0018 6.1E-08 51.4 3.3 26 106-131 23-48 (201)
365 3dz8_A RAS-related protein RAB 96.4 0.0018 6.1E-08 50.9 3.3 23 109-131 25-47 (191)
366 3lv8_A DTMP kinase, thymidylat 96.4 0.0022 7.5E-08 53.5 3.9 27 106-132 26-52 (236)
367 3d3q_A TRNA delta(2)-isopenten 96.4 0.0019 6.6E-08 56.8 3.7 25 108-132 8-32 (340)
368 1ypw_A Transitional endoplasmi 96.4 0.00076 2.6E-08 65.8 1.2 33 100-132 504-536 (806)
369 2xtp_A GTPase IMAP family memb 96.4 0.0015 5E-08 54.4 2.8 24 108-131 23-46 (260)
370 1z06_A RAS-related protein RAB 96.4 0.0021 7.1E-08 50.3 3.5 22 109-130 22-43 (189)
371 2a5j_A RAS-related protein RAB 96.4 0.0021 7E-08 50.5 3.5 23 109-131 23-45 (191)
372 3reg_A RHO-like small GTPase; 96.4 0.0021 7.4E-08 50.5 3.5 23 109-131 25-47 (194)
373 1x3s_A RAS-related protein RAB 96.4 0.0022 7.4E-08 50.1 3.5 24 108-131 16-39 (195)
374 3a1s_A Iron(II) transport prot 96.4 0.0017 5.8E-08 54.6 3.0 23 109-131 7-29 (258)
375 1zd9_A ADP-ribosylation factor 96.4 0.0022 7.5E-08 50.3 3.5 24 108-131 23-46 (188)
376 1ltq_A Polynucleotide kinase; 96.4 0.0019 6.6E-08 54.7 3.4 23 108-130 3-25 (301)
377 4tmk_A Protein (thymidylate ki 96.4 0.0023 8E-08 52.4 3.7 27 106-132 2-28 (213)
378 2ew1_A RAS-related protein RAB 96.4 0.002 6.8E-08 51.7 3.3 23 109-131 28-50 (201)
379 1l8q_A Chromosomal replication 96.3 0.0019 6.6E-08 55.5 3.3 26 107-132 37-62 (324)
380 2atv_A RERG, RAS-like estrogen 96.3 0.0023 8E-08 50.4 3.5 24 107-130 28-51 (196)
381 2p5s_A RAS and EF-hand domain 96.3 0.0023 7.9E-08 50.6 3.5 26 106-131 27-52 (199)
382 1sky_E F1-ATPase, F1-ATP synth 96.3 0.0024 8.4E-08 58.5 4.0 36 96-132 141-176 (473)
383 1ko7_A HPR kinase/phosphatase; 96.3 0.003 1E-07 55.0 4.4 33 96-129 134-166 (314)
384 2bcg_Y Protein YP2, GTP-bindin 96.3 0.0022 7.5E-08 50.9 3.3 23 109-131 10-32 (206)
385 3cph_A RAS-related protein SEC 96.3 0.0024 8.2E-08 50.7 3.5 25 107-131 20-44 (213)
386 3i8s_A Ferrous iron transport 96.3 0.0018 6E-08 54.9 2.8 24 108-131 4-27 (274)
387 2iwr_A Centaurin gamma 1; ANK 96.3 0.0018 6.2E-08 49.9 2.6 23 108-130 8-30 (178)
388 1ksh_A ARF-like protein 2; sma 96.3 0.0017 5.7E-08 50.6 2.5 25 106-130 17-41 (186)
389 1zbd_A Rabphilin-3A; G protein 96.3 0.002 6.9E-08 50.9 3.0 23 109-131 10-32 (203)
390 2qmh_A HPR kinase/phosphorylas 96.3 0.0036 1.2E-07 51.2 4.5 34 96-130 24-57 (205)
391 2ocp_A DGK, deoxyguanosine kin 96.3 0.0025 8.6E-08 52.5 3.6 27 106-132 1-27 (241)
392 3cbq_A GTP-binding protein REM 96.3 0.0011 3.9E-08 52.7 1.4 22 109-130 25-46 (195)
393 3tmk_A Thymidylate kinase; pho 96.3 0.0031 1.1E-07 51.9 4.0 28 105-132 3-30 (216)
394 3c5c_A RAS-like protein 12; GD 96.3 0.0027 9.3E-08 49.9 3.5 23 108-130 22-44 (187)
395 2p65_A Hypothetical protein PF 96.3 0.0025 8.5E-08 49.2 3.2 27 106-132 42-68 (187)
396 1gwn_A RHO-related GTP-binding 96.3 0.0024 8.3E-08 51.3 3.3 24 108-131 29-52 (205)
397 2fv8_A H6, RHO-related GTP-bin 96.3 0.0025 8.6E-08 50.9 3.3 32 99-130 17-48 (207)
398 1zj6_A ADP-ribosylation factor 96.3 0.0021 7E-08 50.3 2.7 24 106-129 15-38 (187)
399 2fh5_B SR-beta, signal recogni 96.2 0.0028 9.5E-08 50.6 3.5 24 108-131 8-31 (214)
400 1jwy_B Dynamin A GTPase domain 96.2 0.002 6.8E-08 55.0 2.7 23 108-130 25-47 (315)
401 3sr0_A Adenylate kinase; phosp 96.2 0.0031 1.1E-07 51.4 3.8 24 109-132 2-25 (206)
402 2qz4_A Paraplegin; AAA+, SPG7, 96.2 0.0036 1.2E-07 51.6 4.2 28 105-132 37-64 (262)
403 3bh0_A DNAB-like replicative h 96.2 0.002 6.7E-08 55.8 2.6 37 96-132 57-93 (315)
404 2r62_A Cell division protease 96.2 0.001 3.4E-08 55.5 0.7 32 99-132 38-69 (268)
405 4dhe_A Probable GTP-binding pr 96.2 0.001 3.5E-08 53.5 0.7 25 107-131 29-53 (223)
406 3zvl_A Bifunctional polynucleo 96.2 0.0024 8.2E-08 57.4 3.2 30 102-131 253-282 (416)
407 2o52_A RAS-related protein RAB 96.2 0.0021 7.1E-08 51.1 2.5 22 109-130 27-48 (200)
408 2h17_A ADP-ribosylation factor 96.2 0.0019 6.7E-08 50.2 2.3 24 107-130 21-44 (181)
409 3ld9_A DTMP kinase, thymidylat 96.2 0.0036 1.2E-07 51.8 4.0 28 105-132 19-46 (223)
410 3crm_A TRNA delta(2)-isopenten 96.2 0.003 1E-07 55.2 3.7 25 108-132 6-30 (323)
411 2gco_A H9, RHO-related GTP-bin 96.2 0.0029 9.9E-08 50.2 3.3 22 109-130 27-48 (201)
412 3t5d_A Septin-7; GTP-binding p 96.2 0.0017 5.8E-08 54.7 1.9 22 109-130 10-31 (274)
413 4bas_A ADP-ribosylation factor 96.1 0.002 6.7E-08 50.6 2.1 24 107-130 17-40 (199)
414 2z4s_A Chromosomal replication 96.1 0.0029 9.9E-08 57.3 3.4 26 107-132 130-155 (440)
415 2f7s_A C25KG, RAS-related prot 96.1 0.0026 8.8E-08 50.9 2.8 22 109-130 27-48 (217)
416 2atx_A Small GTP binding prote 96.1 0.0033 1.1E-07 49.3 3.3 22 109-130 20-41 (194)
417 2h57_A ADP-ribosylation factor 96.1 0.0015 5.1E-08 51.2 1.3 25 107-131 21-45 (190)
418 2hf9_A Probable hydrogenase ni 96.1 0.0031 1.1E-07 50.9 3.3 26 107-132 38-63 (226)
419 2fu5_C RAS-related protein RAB 96.1 0.0019 6.5E-08 50.0 1.9 22 109-130 10-31 (183)
420 2qu8_A Putative nucleolar GTP- 96.1 0.0023 7.8E-08 52.0 2.5 24 107-130 29-52 (228)
421 2il1_A RAB12; G-protein, GDP, 96.1 0.002 6.7E-08 50.9 2.0 22 109-130 28-49 (192)
422 2i1q_A DNA repair and recombin 96.1 0.0031 1.1E-07 54.3 3.4 28 103-130 94-121 (322)
423 3llu_A RAS-related GTP-binding 96.1 0.0026 9E-08 50.3 2.6 24 108-131 21-44 (196)
424 2q3h_A RAS homolog gene family 96.1 0.0028 9.6E-08 50.0 2.7 25 106-130 19-43 (201)
425 2zts_A Putative uncharacterize 96.0 0.0044 1.5E-07 50.5 3.8 26 103-128 26-51 (251)
426 2j1l_A RHO-related GTP-binding 96.0 0.0027 9.4E-08 51.0 2.5 22 109-130 36-57 (214)
427 2hup_A RAS-related protein RAB 96.0 0.0038 1.3E-07 49.7 3.3 22 109-130 31-52 (201)
428 3a8t_A Adenylate isopentenyltr 96.0 0.0039 1.3E-07 54.8 3.6 27 106-132 39-65 (339)
429 2v3c_C SRP54, signal recogniti 96.0 0.0028 9.6E-08 57.5 2.8 31 102-132 92-124 (432)
430 2aka_B Dynamin-1; fusion prote 96.0 0.0027 9.3E-08 53.5 2.5 24 108-131 27-50 (299)
431 3exa_A TRNA delta(2)-isopenten 96.0 0.0043 1.5E-07 54.1 3.8 26 107-132 3-28 (322)
432 4gzl_A RAS-related C3 botulinu 96.0 0.0041 1.4E-07 49.6 3.3 24 107-130 30-53 (204)
433 3def_A T7I23.11 protein; chlor 96.0 0.0033 1.1E-07 52.6 2.8 24 108-131 37-60 (262)
434 1p5z_B DCK, deoxycytidine kina 96.0 0.0021 7.3E-08 53.7 1.6 28 105-132 22-49 (263)
435 3cpj_B GTP-binding protein YPT 95.9 0.0047 1.6E-07 49.9 3.6 23 109-131 15-37 (223)
436 2g3y_A GTP-binding protein GEM 95.9 0.0036 1.2E-07 50.9 2.8 22 109-130 39-60 (211)
437 3q3j_B RHO-related GTP-binding 95.9 0.0049 1.7E-07 49.7 3.5 24 107-130 27-50 (214)
438 4hlc_A DTMP kinase, thymidylat 95.9 0.0056 1.9E-07 49.7 3.8 26 107-132 2-27 (205)
439 1h65_A Chloroplast outer envel 95.9 0.0037 1.3E-07 52.5 2.7 23 109-131 41-63 (270)
440 3cnl_A YLQF, putative uncharac 95.9 0.0037 1.3E-07 52.7 2.7 24 108-131 100-123 (262)
441 4a1f_A DNAB helicase, replicat 95.8 0.0039 1.3E-07 54.8 2.8 37 96-132 35-71 (338)
442 2j0v_A RAC-like GTP-binding pr 95.8 0.005 1.7E-07 49.0 3.3 23 108-130 10-32 (212)
443 2yc2_C IFT27, small RAB-relate 95.8 0.0019 6.5E-08 50.9 0.6 23 108-130 21-43 (208)
444 1u94_A RECA protein, recombina 95.8 0.0067 2.3E-07 53.6 4.2 29 104-132 60-88 (356)
445 3p32_A Probable GTPase RV1496/ 95.8 0.0063 2.2E-07 53.4 4.0 27 106-132 78-104 (355)
446 3dm5_A SRP54, signal recogniti 95.8 0.0059 2E-07 55.6 3.9 27 106-132 99-125 (443)
447 3syl_A Protein CBBX; photosynt 95.8 0.0068 2.3E-07 51.3 4.0 27 106-132 66-92 (309)
448 2chg_A Replication factor C sm 95.8 0.006 2.1E-07 48.1 3.5 24 109-132 40-63 (226)
449 4djt_A GTP-binding nuclear pro 95.8 0.0017 5.9E-08 52.0 0.1 22 109-130 13-34 (218)
450 3foz_A TRNA delta(2)-isopenten 95.8 0.007 2.4E-07 52.7 4.0 26 107-132 10-35 (316)
451 2v1u_A Cell division control p 95.7 0.0052 1.8E-07 53.2 3.1 28 105-132 42-69 (387)
452 2xau_A PRE-mRNA-splicing facto 95.7 0.0044 1.5E-07 60.2 2.8 30 103-132 105-134 (773)
453 2b6h_A ADP-ribosylation factor 95.7 0.0059 2E-07 48.1 3.2 24 106-129 28-51 (192)
454 4dcu_A GTP-binding protein ENG 95.7 0.0031 1.1E-07 57.3 1.6 23 108-130 24-46 (456)
455 2orw_A Thymidine kinase; TMTK, 95.7 0.0071 2.4E-07 48.2 3.5 26 106-131 2-28 (184)
456 3gmt_A Adenylate kinase; ssgci 95.7 0.0078 2.7E-07 50.1 3.8 26 107-132 8-33 (230)
457 3t15_A Ribulose bisphosphate c 95.6 0.0083 2.8E-07 51.2 4.0 27 106-132 35-61 (293)
458 1xwi_A SKD1 protein; VPS4B, AA 95.6 0.009 3.1E-07 51.7 4.1 27 105-131 43-69 (322)
459 3n70_A Transport activator; si 95.6 0.0082 2.8E-07 45.5 3.4 28 105-132 22-49 (145)
460 2x77_A ADP-ribosylation factor 95.6 0.0045 1.5E-07 48.3 1.9 24 106-129 21-44 (189)
461 3tqf_A HPR(Ser) kinase; transf 95.5 0.011 3.8E-07 47.3 4.1 32 97-129 7-38 (181)
462 3gj0_A GTP-binding nuclear pro 95.5 0.0057 2E-07 49.1 2.3 23 109-131 17-40 (221)
463 3eph_A TRNA isopentenyltransfe 95.5 0.0091 3.1E-07 53.7 3.8 25 108-132 3-27 (409)
464 1ofh_A ATP-dependent HSL prote 95.5 0.0094 3.2E-07 50.1 3.7 26 107-132 50-75 (310)
465 2q6t_A DNAB replication FORK h 95.4 0.0062 2.1E-07 55.1 2.6 37 96-132 189-225 (444)
466 3uk6_A RUVB-like 2; hexameric 95.4 0.01 3.5E-07 51.5 3.9 27 106-132 69-95 (368)
467 1tue_A Replication protein E1; 95.4 0.0095 3.2E-07 48.9 3.3 29 104-132 55-83 (212)
468 1puj_A YLQF, conserved hypothe 95.3 0.0086 3E-07 51.0 3.0 26 106-131 119-144 (282)
469 3hws_A ATP-dependent CLP prote 95.3 0.01 3.4E-07 51.9 3.5 27 106-132 50-76 (363)
470 1wxq_A GTP-binding protein; st 95.3 0.007 2.4E-07 54.2 2.5 23 109-131 2-24 (397)
471 3l0o_A Transcription terminati 95.3 0.012 3.9E-07 53.0 3.9 34 99-132 167-200 (427)
472 2qby_B CDC6 homolog 3, cell di 95.3 0.013 4.3E-07 51.0 4.0 27 106-132 44-70 (384)
473 3geh_A MNME, tRNA modification 95.3 0.007 2.4E-07 55.3 2.3 27 105-131 222-248 (462)
474 3d8b_A Fidgetin-like protein 1 95.2 0.014 4.7E-07 51.2 4.1 28 105-132 115-142 (357)
475 3r7w_A Gtpase1, GTP-binding pr 95.2 0.0082 2.8E-07 51.5 2.6 24 107-130 3-26 (307)
476 3pvs_A Replication-associated 95.2 0.0068 2.3E-07 55.1 2.2 33 100-132 41-75 (447)
477 3th5_A RAS-related C3 botulinu 94.2 0.0032 1.1E-07 49.9 0.0 24 107-130 30-53 (204)
478 1d2n_A N-ethylmaleimide-sensit 95.2 0.012 4E-07 49.2 3.5 27 106-132 63-89 (272)
479 3eie_A Vacuolar protein sortin 95.2 0.015 5.1E-07 50.0 4.2 27 106-132 50-76 (322)
480 2qgz_A Helicase loader, putati 95.1 0.016 5.6E-07 49.8 4.1 26 107-132 152-177 (308)
481 2hjg_A GTP-binding protein ENG 95.1 0.0068 2.3E-07 54.6 1.7 22 109-130 5-26 (436)
482 2vhj_A Ntpase P4, P4; non- hyd 95.1 0.012 4.1E-07 51.5 3.1 28 103-130 119-146 (331)
483 4b4t_K 26S protease regulatory 95.0 0.019 6.3E-07 52.1 4.3 30 103-132 202-231 (428)
484 3ec1_A YQEH GTPase; atnos1, at 95.0 0.013 4.6E-07 51.7 3.3 25 106-130 161-185 (369)
485 2qp9_X Vacuolar protein sortin 95.0 0.015 5.3E-07 50.9 3.6 27 106-132 83-109 (355)
486 1x6v_B Bifunctional 3'-phospho 95.0 0.016 5.5E-07 54.9 3.9 27 106-132 51-77 (630)
487 3pfi_A Holliday junction ATP-d 94.9 0.015 5.2E-07 49.9 3.5 24 109-132 57-80 (338)
488 4b4t_M 26S protease regulatory 94.9 0.02 6.8E-07 51.9 4.3 30 103-132 211-240 (434)
489 1xp8_A RECA protein, recombina 94.9 0.016 5.5E-07 51.3 3.6 30 103-132 70-99 (366)
490 4b4t_L 26S protease subunit RP 94.9 0.021 7E-07 51.9 4.3 30 103-132 211-240 (437)
491 1um8_A ATP-dependent CLP prote 94.9 0.016 5.6E-07 50.7 3.6 26 107-132 72-97 (376)
492 2j37_W Signal recognition part 94.9 0.017 5.7E-07 53.5 3.7 28 105-132 99-126 (504)
493 1g41_A Heat shock protein HSLU 94.9 0.016 5.5E-07 52.7 3.5 24 109-132 52-75 (444)
494 2x2e_A Dynamin-1; nitration, h 94.9 0.0073 2.5E-07 52.9 1.2 23 108-130 32-54 (353)
495 1bif_A 6-phosphofructo-2-kinas 94.9 0.019 6.4E-07 52.3 4.0 27 106-132 38-64 (469)
496 1m8p_A Sulfate adenylyltransfe 94.8 0.019 6.3E-07 53.9 4.0 27 106-132 395-421 (573)
497 2r44_A Uncharacterized protein 94.8 0.013 4.3E-07 50.4 2.6 34 99-132 38-71 (331)
498 2qpt_A EH domain-containing pr 94.8 0.012 4E-07 55.0 2.5 26 106-131 64-89 (550)
499 2qen_A Walker-type ATPase; unk 94.8 0.02 6.7E-07 48.8 3.8 25 106-130 30-54 (350)
500 1g8f_A Sulfate adenylyltransfe 94.8 0.018 6E-07 53.4 3.6 28 105-132 393-420 (511)
No 1
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.93 E-value=7.3e-27 Score=208.76 Aligned_cols=143 Identities=12% Similarity=0.174 Sum_probs=101.4
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCH----HH-
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDP----KE- 149 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~----~~- 149 (229)
++|+++||+|.|++.. +|+|+||+|++||+++|+||||||||||||+|+|+++ |++|. .++|+++ ..
T Consensus 3 ~~l~i~~ls~~y~~~~----~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~G~I~i~G~~i~~~~~~~ 75 (359)
T 3fvq_A 3 AALHIGHLSKSFQNTP----VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ---PDSGEISLSGKTIFSKNTNL 75 (359)
T ss_dssp CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC---CSEEEEEETTEEEESSSCBC
T ss_pred cEEEEEeEEEEECCEE----EEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 4799999999998765 8999999999999999999999999999999999999 99997 8888765 11
Q ss_pred HHhhcCCCcccCcch---hhhHHHHHHccccccCCCCC---------------CCCCCchhhhhhccCCccE-----EEe
Q 027060 150 AHARRGAPWTFNPLL---LLNCLKNLRNQGSVYAPSFD---------------HGVGDPVEDDILVGLQHKV-----VIV 206 (229)
Q Consensus 150 ~~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~rv-----Li~ 206 (229)
...++.+++.||.+. .+||.||+.++......... ....++....++.|+++|| |+.
T Consensus 76 ~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~ 155 (359)
T 3fvq_A 76 PVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAP 155 (359)
T ss_dssp CGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred chhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 122345666666543 48999999997643211100 1123344445555555554 555
Q ss_pred cCCeeeeccc-------CHHHHHHHH
Q 027060 207 DGNYLFLDGG-------VWKDVSSMF 225 (229)
Q Consensus 207 d~~~LlLDEP-------~~~~l~~~l 225 (229)
+|++|+|||| .+.++++.+
T Consensus 156 ~P~lLLLDEPts~LD~~~r~~l~~~l 181 (359)
T 3fvq_A 156 DPELILLDEPFSALDEQLRRQIREDM 181 (359)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 6666666666 466665533
No 2
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.93 E-value=1.2e-26 Score=207.66 Aligned_cols=151 Identities=20% Similarity=0.238 Sum_probs=107.6
Q ss_pred CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH----
Q 027060 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK---- 148 (229)
Q Consensus 74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~---- 148 (229)
++++|+++||+|.|+.......+|+||||+|++||++||+||||||||||+|+|+|+++ |++|. .++|+++.
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~---p~~G~I~i~G~~i~~~~~ 97 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTEGSVLVDGQELTTLSE 97 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECSSCCH
T ss_pred CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC---CCceEEEECCEECCcCCH
Confidence 45689999999999754333458999999999999999999999999999999999999 99997 88987532
Q ss_pred -HH-HhhcCCCcccCcc---hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhh
Q 027060 149 -EA-HARRGAPWTFNPL---LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDIL 196 (229)
Q Consensus 149 -~~-~~~~~~~~~~~~~---~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~ 196 (229)
.. ..+..+++.||.+ +.+||.+|+.++..... ..++.++.+++..+.+
T Consensus 98 ~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArA 177 (366)
T 3tui_C 98 SELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARA 177 (366)
T ss_dssp HHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHH
Confidence 11 2234555555554 34899999987643211 1223345555555555
Q ss_pred ccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 197 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 197 ~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+..++++|++|||+..||......+.+++..
T Consensus 178 L~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~ 208 (366)
T 3tui_C 178 LASNPKVLLCDQATSALDPATTRSILELLKD 208 (366)
T ss_dssp TTTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred HhcCCCEEEEECCCccCCHHHHHHHHHHHHH
Confidence 6566666666666666666667888777754
No 3
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.93 E-value=1.5e-26 Score=194.37 Aligned_cols=146 Identities=17% Similarity=0.135 Sum_probs=97.8
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH-----
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK----- 148 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~----- 148 (229)
+++|+++|+++.|++.. +|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|. .++|+++.
T Consensus 2 ~~~l~~~~l~~~y~~~~----~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~ 74 (224)
T 2pcj_A 2 AEILRAENIKKVIRGYE----ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA---PTEGKVFLEGKEVDYTNEK 74 (224)
T ss_dssp CEEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC---CSEEEEEETTEECCSSCHH
T ss_pred CcEEEEEeEEEEECCEe----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCCCCHH
Confidence 45799999999998754 8999999999999999999999999999999999999 99997 88886531
Q ss_pred HH---H-hhcCC-CcccCcchhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhh
Q 027060 149 EA---H-ARRGA-PWTFNPLLLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDIL 196 (229)
Q Consensus 149 ~~---~-~~~~~-~~~~~~~~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~ 196 (229)
.. + ..+++ ++.+..+..+|+.||+.++...+. ..++.++.+++..+.+
T Consensus 75 ~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lara 154 (224)
T 2pcj_A 75 ELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARA 154 (224)
T ss_dssp HHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHH
Confidence 11 1 22343 333333344799999987532110 0112233344444444
Q ss_pred ccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 197 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 197 ~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+..++++|++|||+..||...+..+.+++..
T Consensus 155 l~~~p~lllLDEPt~~LD~~~~~~~~~~l~~ 185 (224)
T 2pcj_A 155 LANEPILLFADEPTGNLDSANTKRVMDIFLK 185 (224)
T ss_dssp TTTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 4444444555555555555457777776643
No 4
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.92 E-value=9.3e-27 Score=209.50 Aligned_cols=144 Identities=15% Similarity=0.213 Sum_probs=102.6
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH-Hhh
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA-HAR 153 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~-~~~ 153 (229)
.+|+++||+|.|++.. +|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|. .++|+++... ..+
T Consensus 2 ~~l~~~~l~~~yg~~~----~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~G~I~i~G~~~~~~~~~~ 74 (381)
T 3rlf_A 2 ASVQLQNVTKAWGEVV----VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET---ITSGDLFIGEKRMNDTPPAE 74 (381)
T ss_dssp CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTCCGGG
T ss_pred CEEEEEeEEEEECCEE----EEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC---CCCeEEEECCEECCCCCHHH
Confidence 4699999999998765 8999999999999999999999999999999999999 99997 8888764321 123
Q ss_pred cCCCcccCcc---hhhhHHHHHHccccccCCCC--------------C-CCCCCchhhhhhccCCccE-----EEecCCe
Q 027060 154 RGAPWTFNPL---LLLNCLKNLRNQGSVYAPSF--------------D-HGVGDPVEDDILVGLQHKV-----VIVDGNY 210 (229)
Q Consensus 154 ~~~~~~~~~~---~~~tv~e~l~~~~~~~~~~~--------------~-~~~~~~~~~~l~~~~~~rv-----Li~d~~~ 210 (229)
+++++.||.+ +.+||.||+.++........ . ....++....++.|+++|| |+.+|++
T Consensus 75 r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~l 154 (381)
T 3rlf_A 75 RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSV 154 (381)
T ss_dssp SCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSE
T ss_pred CCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCE
Confidence 4555666554 34899999998654321100 0 1123344455555555555 5566666
Q ss_pred eeeccc-------CHHHHHHHHh
Q 027060 211 LFLDGG-------VWKDVSSMFD 226 (229)
Q Consensus 211 LlLDEP-------~~~~l~~~l~ 226 (229)
++|||| .+.++++++.
T Consensus 155 LLLDEPts~LD~~~~~~l~~~l~ 177 (381)
T 3rlf_A 155 FLLDEPLSNLDAALRVQMRIEIS 177 (381)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHH
T ss_pred EEEECCCcCCCHHHHHHHHHHHH
Confidence 666666 4666666654
No 5
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.92 E-value=2.8e-26 Score=197.25 Aligned_cols=95 Identities=17% Similarity=0.267 Sum_probs=75.3
Q ss_pred CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH----
Q 027060 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK---- 148 (229)
Q Consensus 74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~---- 148 (229)
|+++|+++||++.|++.. +|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|. .++|+++.
T Consensus 21 m~~~l~i~~l~~~y~~~~----vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~i~~~~~ 93 (263)
T 2olj_A 21 MLQMIDVHQLKKSFGSLE----VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED---FDEGEIIIDGINLKAKDT 93 (263)
T ss_dssp -CCSEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEESSSTTC
T ss_pred chheEEEEeEEEEECCEE----EEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC---CCCcEEEECCEECCCccc
Confidence 345799999999998654 8999999999999999999999999999999999999 99997 88886541
Q ss_pred ---HHHhhcCC-CcccCcchhhhHHHHHHcc
Q 027060 149 ---EAHARRGA-PWTFNPLLLLNCLKNLRNQ 175 (229)
Q Consensus 149 ---~~~~~~~~-~~~~~~~~~~tv~e~l~~~ 175 (229)
..+..+++ ++.+..+..+|+.||+.++
T Consensus 94 ~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~ 124 (263)
T 2olj_A 94 NLNKVREEVGMVFQRFNLFPHMTVLNNITLA 124 (263)
T ss_dssp CHHHHHHHEEEECSSCCCCTTSCHHHHHHHH
T ss_pred cHHHHhCcEEEEeCCCcCCCCCCHHHHHHHH
Confidence 12233443 3333334457999999874
No 6
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.92 E-value=7.9e-26 Score=194.69 Aligned_cols=146 Identities=15% Similarity=0.168 Sum_probs=102.1
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH-----
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK----- 148 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~----- 148 (229)
+++|+++||++.|++.. +|+++||+|++||++||+||||||||||+|+|+|+++ |++|. .++|+++.
T Consensus 9 ~~~l~~~~l~~~~~~~~----vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~~~~~~~~ 81 (266)
T 4g1u_C 9 VALLEASHLHYHVQQQA----LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS---PSHGECHLLGQNLNSWQPK 81 (266)
T ss_dssp CCEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC---CSSCEEEETTEETTTSCHH
T ss_pred cceEEEEeEEEEeCCee----EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECCcCCHH
Confidence 45899999999998765 8999999999999999999999999999999999999 99997 88887542
Q ss_pred HHHhhcCC-CcccCcchhhhHHHHHHccccccCC-------------------------CCCCCCCCchhhhhhccC---
Q 027060 149 EAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAP-------------------------SFDHGVGDPVEDDILVGL--- 199 (229)
Q Consensus 149 ~~~~~~~~-~~~~~~~~~~tv~e~l~~~~~~~~~-------------------------~~~~~~~~~~~~~l~~~~--- 199 (229)
.....+++ ++.+.....+|+.||+.++...+.. .++.++.+++..+.++..
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~ 161 (266)
T 4g1u_C 82 ALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQ 161 (266)
T ss_dssp HHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCC
T ss_pred HHhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccc
Confidence 22333443 3333333448999999886432210 122334444444444444
Q ss_pred ---CccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 200 ---QHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 200 ---~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
++++|++|||+..||...+..+.+++..
T Consensus 162 ~~~~p~lLllDEPts~LD~~~~~~i~~~l~~ 192 (266)
T 4g1u_C 162 PQPTPRWLFLDEPTSALDLYHQQHTLRLLRQ 192 (266)
T ss_dssp SSCCCEEEEECCCCSSCCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 5555555555555555567777777653
No 7
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.92 E-value=2.9e-26 Score=196.39 Aligned_cols=148 Identities=17% Similarity=0.209 Sum_probs=100.8
Q ss_pred CCCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH--
Q 027060 73 REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-- 149 (229)
Q Consensus 73 ~~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-- 149 (229)
..|++|+++||++.|++.. +|+++||+|++||+++|+||||||||||+|+|+|+++ |++|. .++|+++..
T Consensus 11 ~~~~~l~i~~l~~~y~~~~----vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~~~ 83 (256)
T 1vpl_A 11 HHMGAVVVKDLRKRIGKKE----ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK---PSSGIVTVFGKNVVEEP 83 (256)
T ss_dssp ---CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTCH
T ss_pred ccCCeEEEEEEEEEECCEE----EEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCccH
Confidence 3577899999999998654 8999999999999999999999999999999999999 99997 888875421
Q ss_pred HHhhcCCCcccCc---chhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccC
Q 027060 150 AHARRGAPWTFNP---LLLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGL 199 (229)
Q Consensus 150 ~~~~~~~~~~~~~---~~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~ 199 (229)
...+..+.+.+|. +..+|+.||+.++...+. ..++.++.+++..+.++..
T Consensus 84 ~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~ 163 (256)
T 1vpl_A 84 HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMV 163 (256)
T ss_dssp HHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTT
T ss_pred HHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 1122334444443 344799999987432110 0122334444444444555
Q ss_pred CccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 200 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 200 ~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
++++|++|||+..||...+..+.+++..
T Consensus 164 ~p~lllLDEPts~LD~~~~~~l~~~l~~ 191 (256)
T 1vpl_A 164 NPRLAILDEPTSGLDVLNAREVRKILKQ 191 (256)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHH
Confidence 5555555555555555567777777653
No 8
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.92 E-value=5.5e-26 Score=196.63 Aligned_cols=146 Identities=16% Similarity=0.177 Sum_probs=101.1
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH-----H
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK-----E 149 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~-----~ 149 (229)
++|+++||++.|++.. .+|+||||+|++||++||+||||||||||+|+|+|+++ |++|. .++|+++. .
T Consensus 6 ~~l~i~~ls~~y~~~~---~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~---p~~G~I~~~G~~i~~~~~~~ 79 (275)
T 3gfo_A 6 YILKVEELNYNYSDGT---HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK---PSSGRILFDNKPIDYSRKGI 79 (275)
T ss_dssp EEEEEEEEEEECTTSC---EEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCCSHHHH
T ss_pred cEEEEEEEEEEECCCC---eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCeEEEECCEECCcccccH
Confidence 4799999999997532 27999999999999999999999999999999999999 99997 88997641 1
Q ss_pred HHhhcCCCcccCcc----hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhcc
Q 027060 150 AHARRGAPWTFNPL----LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVG 198 (229)
Q Consensus 150 ~~~~~~~~~~~~~~----~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~ 198 (229)
...+..+++.||.+ ..+||.+|+.++..... ..++.++.+++..+.++.
T Consensus 80 ~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~ 159 (275)
T 3gfo_A 80 MKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLV 159 (275)
T ss_dssp HHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHT
T ss_pred HHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHH
Confidence 12234455556543 23799999987543211 012233444444444444
Q ss_pred CCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 199 ~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
.++++|++|||+..||...+..+.+++..
T Consensus 160 ~~P~lLlLDEPts~LD~~~~~~i~~~l~~ 188 (275)
T 3gfo_A 160 MEPKVLILDEPTAGLDPMGVSEIMKLLVE 188 (275)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 55555555555555555567777777653
No 9
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.92 E-value=5.1e-26 Score=194.80 Aligned_cols=95 Identities=19% Similarity=0.300 Sum_probs=76.6
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---- 149 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---- 149 (229)
+++|+++||++.|++.. +|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|. .++|+++..
T Consensus 5 ~~~l~i~~l~~~y~~~~----vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~ 77 (257)
T 1g6h_A 5 MEILRTENIVKYFGEFK----ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK---ADEGRVYFENKDITNKEPA 77 (257)
T ss_dssp CEEEEEEEEEEEETTEE----EEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHH
T ss_pred CcEEEEeeeEEEECCEe----eEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHH
Confidence 45799999999998754 8999999999999999999999999999999999999 99997 888875421
Q ss_pred HHhhcCCCcccCcc---hhhhHHHHHHccc
Q 027060 150 AHARRGAPWTFNPL---LLLNCLKNLRNQG 176 (229)
Q Consensus 150 ~~~~~~~~~~~~~~---~~~tv~e~l~~~~ 176 (229)
...+..+.+.+|.. ..+|+.||+.++.
T Consensus 78 ~~~~~~i~~v~q~~~l~~~~tv~enl~~~~ 107 (257)
T 1g6h_A 78 ELYHYGIVRTFQTPQPLKEMTVLENLLIGE 107 (257)
T ss_dssp HHHHHTEEECCCCCGGGGGSBHHHHHHGGG
T ss_pred HHHhCCEEEEccCCccCCCCcHHHHHHHHH
Confidence 12233444444443 3479999998864
No 10
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.92 E-value=3.8e-26 Score=193.23 Aligned_cols=96 Identities=22% Similarity=0.312 Sum_probs=74.1
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH-----HH
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK-----EA 150 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~-----~~ 150 (229)
+|+++||++.|++......+|+++||+|++||+++|+||||||||||+|+|+|+++ |++|. .++|.++. ..
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~~~~~~~~~~ 77 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PTEGEVYIDNIKTNDLDDDEL 77 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCceEEEECCEEcccCCHHHH
Confidence 48999999999753222348999999999999999999999999999999999999 99997 88886431 11
Q ss_pred --Hh--hcCC-CcccCcchhhhHHHHHHcc
Q 027060 151 --HA--RRGA-PWTFNPLLLLNCLKNLRNQ 175 (229)
Q Consensus 151 --~~--~~~~-~~~~~~~~~~tv~e~l~~~ 175 (229)
.+ .+++ ++.+..++.+|+.||+.++
T Consensus 78 ~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~ 107 (235)
T 3tif_A 78 TKIRRDKIGFVFQQFNLIPLLTALENVELP 107 (235)
T ss_dssp HHHHHHHEEEECTTCCCCTTSCHHHHHHHH
T ss_pred HHHhhccEEEEecCCccCCCCcHHHHHHHH
Confidence 11 2343 3333334457999999875
No 11
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.92 E-value=9.1e-26 Score=202.73 Aligned_cols=146 Identities=14% Similarity=0.212 Sum_probs=102.4
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH-Hh
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA-HA 152 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~-~~ 152 (229)
|.+|+++||++.|++.. +|+++||+|++||+++|+||||||||||||+|+|+++ |++|. .++|+++... ..
T Consensus 9 M~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~ 81 (372)
T 1v43_A 9 MVEVKLENLTKRFGNFT----AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE---PTEGRIYFGDRDVTYLPPK 81 (372)
T ss_dssp CCCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGG
T ss_pred eeeEEEEEEEEEECCEE----EEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCceEEEECCEECCCCChh
Confidence 44699999999998754 8999999999999999999999999999999999999 99997 8888764321 12
Q ss_pred hcCCCcccCcch---hhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCCcc
Q 027060 153 RRGAPWTFNPLL---LLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQHK 202 (229)
Q Consensus 153 ~~~~~~~~~~~~---~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~~r 202 (229)
++.+++.||.+. .+||.+|+.++..... ..++.++.+++..+.++..+++
T Consensus 82 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~ 161 (372)
T 1v43_A 82 DRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPD 161 (372)
T ss_dssp GGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCS
T ss_pred hCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 244556666543 4799999998754221 1123444455555555555555
Q ss_pred EEEecCCeeeecccCHHHHHHHHhh
Q 027060 203 VVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 203 vLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+|++|||+..||...+.++++++..
T Consensus 162 lLLLDEP~s~LD~~~r~~l~~~l~~ 186 (372)
T 1v43_A 162 VLLMDEPLSNLDAKLRVAMRAEIKK 186 (372)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHH
Confidence 5555555555555567777776643
No 12
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.92 E-value=5.2e-26 Score=203.42 Aligned_cols=144 Identities=16% Similarity=0.215 Sum_probs=99.7
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH-Hhh
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA-HAR 153 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~-~~~ 153 (229)
.+|+++||+|.|++.. +|+++||+|++||+++|+||||||||||||+|+|+++ |++|. .++|+++... ..+
T Consensus 2 ~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~~ 74 (359)
T 2yyz_A 2 PSIRVVNLKKYFGKVK----AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK---PTSGEIYFDDVLVNDIPPKY 74 (359)
T ss_dssp CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGGG
T ss_pred cEEEEEEEEEEECCEE----EEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC---CCccEEEECCEECCCCChhh
Confidence 3699999999998754 8999999999999999999999999999999999999 99997 8888764321 122
Q ss_pred cCCCcccCcc---hhhhHHHHHHccccccCCC--------------CC-CCCCCchhhhhhccCCccE-----EEecCCe
Q 027060 154 RGAPWTFNPL---LLLNCLKNLRNQGSVYAPS--------------FD-HGVGDPVEDDILVGLQHKV-----VIVDGNY 210 (229)
Q Consensus 154 ~~~~~~~~~~---~~~tv~e~l~~~~~~~~~~--------------~~-~~~~~~~~~~l~~~~~~rv-----Li~d~~~ 210 (229)
+.+++.||.+ +.+|+.+|+.++....... +. ....++....++.|+++|+ |+.+|++
T Consensus 75 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~l 154 (359)
T 2yyz_A 75 REVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKV 154 (359)
T ss_dssp TTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 3455555543 4489999999875432100 00 1122333444555554444 5555555
Q ss_pred eeeccc-------CHHHHHHHHh
Q 027060 211 LFLDGG-------VWKDVSSMFD 226 (229)
Q Consensus 211 LlLDEP-------~~~~l~~~l~ 226 (229)
++|||| .+.++++++.
T Consensus 155 LLLDEP~s~LD~~~r~~l~~~l~ 177 (359)
T 2yyz_A 155 LLFDEPLSNLDANLRMIMRAEIK 177 (359)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHH
T ss_pred EEEECCcccCCHHHHHHHHHHHH
Confidence 555555 5666666654
No 13
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.92 E-value=1.1e-25 Score=191.00 Aligned_cols=94 Identities=26% Similarity=0.323 Sum_probs=75.7
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH----H
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----A 150 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----~ 150 (229)
++|+++||++.|++.. +|+++||+|++||+++|+||||||||||+|+|+|+++ |++|. .++|.++.. .
T Consensus 5 ~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 77 (240)
T 1ji0_A 5 IVLEVQSLHVYYGAIH----AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR---AQKGKIIFNGQDITNKPAHV 77 (240)
T ss_dssp EEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHH
T ss_pred ceEEEEeEEEEECCee----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCCHHH
Confidence 4799999999998754 8999999999999999999999999999999999999 99997 888875421 1
Q ss_pred HhhcCCCcccCc---chhhhHHHHHHccc
Q 027060 151 HARRGAPWTFNP---LLLLNCLKNLRNQG 176 (229)
Q Consensus 151 ~~~~~~~~~~~~---~~~~tv~e~l~~~~ 176 (229)
..+.++.+.+|. +..+|+.||+.++.
T Consensus 78 ~~~~~i~~v~q~~~l~~~ltv~enl~~~~ 106 (240)
T 1ji0_A 78 INRMGIALVPEGRRIFPELTVYENLMMGA 106 (240)
T ss_dssp HHHTTEEEECSSCCCCTTSBHHHHHHGGG
T ss_pred HHhCCEEEEecCCccCCCCcHHHHHHHhh
Confidence 223334444444 33479999998853
No 14
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.92 E-value=1.7e-25 Score=186.99 Aligned_cols=143 Identities=16% Similarity=0.219 Sum_probs=98.6
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhh
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHAR 153 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~ 153 (229)
..+|+++||++.|++ . +|+++||+|++||+++|+||||||||||+|+|+|+++ |++|. .++|.++.. .+
T Consensus 8 ~~~l~~~~ls~~y~~-~----il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~--~~ 77 (214)
T 1sgw_A 8 GSKLEIRDLSVGYDK-P----VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK---PLKGEIIYNGVPITK--VK 77 (214)
T ss_dssp -CEEEEEEEEEESSS-E----EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGG--GG
T ss_pred CceEEEEEEEEEeCC-e----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEhhh--hc
Confidence 347999999999976 4 8999999999999999999999999999999999999 99997 888877642 23
Q ss_pred cCCCcccCc---chhhhHHHHHHccccccC-C-----------------------CCCCCCCCchhhhhhccCCccEEEe
Q 027060 154 RGAPWTFNP---LLLLNCLKNLRNQGSVYA-P-----------------------SFDHGVGDPVEDDILVGLQHKVVIV 206 (229)
Q Consensus 154 ~~~~~~~~~---~~~~tv~e~l~~~~~~~~-~-----------------------~~~~~~~~~~~~~l~~~~~~rvLi~ 206 (229)
..+.+.+|. +..+|+.||+.++...+. . .++.++.+++..+.++..++++|++
T Consensus 78 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllL 157 (214)
T 1sgw_A 78 GKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVL 157 (214)
T ss_dssp GGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEE
T ss_pred CcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 334444443 334799999987532110 0 0112233333334444444555555
Q ss_pred cCCeeeecccCHHHHHHHHhh
Q 027060 207 DGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 207 d~~~LlLDEP~~~~l~~~l~~ 227 (229)
|||+..||...+..+.+++..
T Consensus 158 DEPts~LD~~~~~~l~~~l~~ 178 (214)
T 1sgw_A 158 DDPVVAIDEDSKHKVLKSILE 178 (214)
T ss_dssp ESTTTTSCTTTHHHHHHHHHH
T ss_pred ECCCcCCCHHHHHHHHHHHHH
Confidence 555555555567888777653
No 15
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.91 E-value=9.6e-26 Score=201.92 Aligned_cols=144 Identities=17% Similarity=0.259 Sum_probs=99.1
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH-Hhh
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA-HAR 153 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~-~~~ 153 (229)
.+|+++||++.|++.. +|+++||+|++||+++|+||||||||||||+|+|+++ |++|. .++|+++... ..+
T Consensus 2 ~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~~ 74 (362)
T 2it1_A 2 VEIKLENIVKKFGNFT----ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK---PTSGKIYFDEKDVTELPPKD 74 (362)
T ss_dssp CCEEEEEEEEESSSSE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGGG
T ss_pred cEEEEEeEEEEECCEE----EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC---CCceEEEECCEECCcCCHhH
Confidence 3699999999998754 8999999999999999999999999999999999999 99997 8888764321 122
Q ss_pred cCCCcccCcc---hhhhHHHHHHccccccCCC--------------CC-CCCCCchhhhhhccCCccE-----EEecCCe
Q 027060 154 RGAPWTFNPL---LLLNCLKNLRNQGSVYAPS--------------FD-HGVGDPVEDDILVGLQHKV-----VIVDGNY 210 (229)
Q Consensus 154 ~~~~~~~~~~---~~~tv~e~l~~~~~~~~~~--------------~~-~~~~~~~~~~l~~~~~~rv-----Li~d~~~ 210 (229)
+.+++.||.+ +.+||.+|+.++....... +. ....++....++.|+++|+ |+.+|++
T Consensus 75 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~l 154 (362)
T 2it1_A 75 RNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEV 154 (362)
T ss_dssp TTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 3455555543 4489999998864321100 00 1122333444555554444 5555555
Q ss_pred eeeccc-------CHHHHHHHHh
Q 027060 211 LFLDGG-------VWKDVSSMFD 226 (229)
Q Consensus 211 LlLDEP-------~~~~l~~~l~ 226 (229)
++|||| .+.++++++.
T Consensus 155 LLLDEP~s~LD~~~r~~l~~~l~ 177 (362)
T 2it1_A 155 LLLDEPLSNLDALLRLEVRAELK 177 (362)
T ss_dssp EEEESGGGGSCHHHHHHHHHHHH
T ss_pred EEEECccccCCHHHHHHHHHHHH
Confidence 555555 5666666654
No 16
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.91 E-value=5.6e-26 Score=204.18 Aligned_cols=94 Identities=15% Similarity=0.188 Sum_probs=77.1
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----- 149 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----- 149 (229)
.+|+++||++.|++.. +|+++||+|++||+++|+||||||||||||+|+|+++ |++|. .++|+++..
T Consensus 2 ~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~~~~~~~~~ 74 (372)
T 1g29_1 2 AGVRLVDVWKVFGEVT----AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE---PSRGQIYIGDKLVADPEKGI 74 (372)
T ss_dssp EEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEEEEEGGGTE
T ss_pred CEEEEEeEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC---CCccEEEECCEECccccccc
Confidence 4699999999998754 8999999999999999999999999999999999999 99997 888876422
Q ss_pred --HHhhcCCCcccCcc---hhhhHHHHHHccc
Q 027060 150 --AHARRGAPWTFNPL---LLLNCLKNLRNQG 176 (229)
Q Consensus 150 --~~~~~~~~~~~~~~---~~~tv~e~l~~~~ 176 (229)
...++.+++.||.+ +.+|+.+|+.++.
T Consensus 75 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~ 106 (372)
T 1g29_1 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPL 106 (372)
T ss_dssp ECCGGGSSEEEECSCCCCCTTSCHHHHHHHHH
T ss_pred cCCHhHCCEEEEeCCCccCCCCCHHHHHHHHH
Confidence 11234455555554 4489999999864
No 17
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.91 E-value=9.2e-26 Score=201.50 Aligned_cols=146 Identities=14% Similarity=0.243 Sum_probs=100.8
Q ss_pred CCCeEEEeeeeEEc-CccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH-
Q 027060 74 EIPVVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA- 150 (229)
Q Consensus 74 ~~~~i~~~~ls~~y-~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~- 150 (229)
+..+|+++||++.| ++.. +|+++||+|++||+++|+||||||||||||+|+|+++ |++|. .++|+++...
T Consensus 11 ~~~~l~~~~l~~~y~g~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~ 83 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPGGAR----SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER---PTKGDVWIGGKRVTDLP 83 (355)
T ss_dssp CCEEEEEEEEEECCTTSTT----CEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTCC
T ss_pred CCceEEEEEEEEEEcCCCE----EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEECCEECCcCC
Confidence 55689999999999 7654 8999999999999999999999999999999999999 99997 8888764321
Q ss_pred HhhcCCCcccCcc---hhhhHHHHHHccccccC---------------------------CCCCCCCCCchhhhhhccCC
Q 027060 151 HARRGAPWTFNPL---LLLNCLKNLRNQGSVYA---------------------------PSFDHGVGDPVEDDILVGLQ 200 (229)
Q Consensus 151 ~~~~~~~~~~~~~---~~~tv~e~l~~~~~~~~---------------------------~~~~~~~~~~~~~~l~~~~~ 200 (229)
..++.+++.||.+ +.+||.||+.++..... ..++.++.+++..+.++..+
T Consensus 84 ~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~ 163 (355)
T 1z47_A 84 PQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPR 163 (355)
T ss_dssp GGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred hhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcC
Confidence 1233455555543 44899999988643211 01122333444444444444
Q ss_pred ccEEEecCCeeeecccCHHHHHHHHh
Q 027060 201 HKVVIVDGNYLFLDGGVWKDVSSMFD 226 (229)
Q Consensus 201 ~rvLi~d~~~LlLDEP~~~~l~~~l~ 226 (229)
+++|++|||+..||...+.++++++.
T Consensus 164 P~lLLLDEP~s~LD~~~r~~l~~~l~ 189 (355)
T 1z47_A 164 PQVLLFDEPFAAIDTQIRRELRTFVR 189 (355)
T ss_dssp CSEEEEESTTCCSSHHHHHHHHHHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 44455555555555545777776654
No 18
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.91 E-value=1.6e-25 Score=192.32 Aligned_cols=92 Identities=15% Similarity=0.199 Sum_probs=73.7
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH-------
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK------- 148 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~------- 148 (229)
+|+++||++.|++.. +|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|. .++|+++.
T Consensus 6 ~l~i~~l~~~y~~~~----vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~ 78 (262)
T 1b0u_A 6 KLHVIDLHKRYGGHE----VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGAIIVNGQNINLVRDKDG 78 (262)
T ss_dssp CEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCEEECTTS
T ss_pred eEEEeeEEEEECCEE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEccccccccc
Confidence 699999999998754 8999999999999999999999999999999999999 99997 88886542
Q ss_pred -----------HHHhhcCC-CcccCcchhhhHHHHHHcc
Q 027060 149 -----------EAHARRGA-PWTFNPLLLLNCLKNLRNQ 175 (229)
Q Consensus 149 -----------~~~~~~~~-~~~~~~~~~~tv~e~l~~~ 175 (229)
..+..+++ ++.+..+..+|+.+|+.++
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~ 117 (262)
T 1b0u_A 79 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA 117 (262)
T ss_dssp SEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHH
T ss_pred cccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhh
Confidence 11223343 3333333447999999874
No 19
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.91 E-value=2.9e-25 Score=191.61 Aligned_cols=96 Identities=19% Similarity=0.165 Sum_probs=74.4
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----- 149 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----- 149 (229)
.+|+++||++.|++.. ...+|+++||+|++||+++|+||||||||||+|+|+|+++ |++|. .++|.++..
T Consensus 15 ~~l~~~~l~~~y~~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~i~~~~~~~ 90 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHP-NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ---PTGGKVLLDGEPLVQYDHHY 90 (271)
T ss_dssp CCEEEEEEEECCTTCT-TSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGGBCHHH
T ss_pred ceEEEEEEEEEeCCCC-CceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEECCEEcccCCHHH
Confidence 4699999999997510 1127999999999999999999999999999999999999 99997 888876532
Q ss_pred HHhhcCC-CcccCcchhhhHHHHHHccc
Q 027060 150 AHARRGA-PWTFNPLLLLNCLKNLRNQG 176 (229)
Q Consensus 150 ~~~~~~~-~~~~~~~~~~tv~e~l~~~~ 176 (229)
.+..+++ ++.+..+. .|+.||+.++.
T Consensus 91 ~~~~i~~v~Q~~~l~~-~tv~enl~~~~ 117 (271)
T 2ixe_A 91 LHTQVAAVGQEPLLFG-RSFRENIAYGL 117 (271)
T ss_dssp HHHHEEEECSSCCCCS-SBHHHHHHTTC
T ss_pred HhccEEEEecCCcccc-ccHHHHHhhhc
Confidence 2233443 33333333 59999998853
No 20
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.91 E-value=2.9e-25 Score=191.07 Aligned_cols=147 Identities=18% Similarity=0.230 Sum_probs=98.1
Q ss_pred eEEEeeeeEEcC-ccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhc
Q 027060 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARR 154 (229)
Q Consensus 77 ~i~~~~ls~~y~-~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~ 154 (229)
+|+++||++.|+ +......+|+++||+|++||+++|+||||||||||+|+|+|+++ |++|. .++|.++.....+.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~---p~~G~I~~~g~~~~~~~~~~ 78 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE---PTSGDVLYDGERKKGYEIRR 78 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCHHHHGG
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCEECchHHhhh
Confidence 589999999997 21000127999999999999999999999999999999999999 99997 88887653222223
Q ss_pred CCCcccCcc----hhhhHHHHHHccccccCCC-------------CC-C--CCCCchhhhhhccCCccE-----EEecCC
Q 027060 155 GAPWTFNPL----LLLNCLKNLRNQGSVYAPS-------------FD-H--GVGDPVEDDILVGLQHKV-----VIVDGN 209 (229)
Q Consensus 155 ~~~~~~~~~----~~~tv~e~l~~~~~~~~~~-------------~~-~--~~~~~~~~~l~~~~~~rv-----Li~d~~ 209 (229)
.+.+.+|.+ ..+|+.+|+.++.....+. +. . ...++....++.|+++|+ |+.+|+
T Consensus 79 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ 158 (266)
T 2yz2_A 79 NIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPD 158 (266)
T ss_dssp GEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred hEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 344555542 2379999998864321000 00 0 112233345555555554 566666
Q ss_pred eeeeccc-------CHHHHHHHHh
Q 027060 210 YLFLDGG-------VWKDVSSMFD 226 (229)
Q Consensus 210 ~LlLDEP-------~~~~l~~~l~ 226 (229)
+++|||| .+..+.+++.
T Consensus 159 lllLDEPts~LD~~~~~~l~~~l~ 182 (266)
T 2yz2_A 159 ILILDEPLVGLDREGKTDLLRIVE 182 (266)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHH
T ss_pred EEEEcCccccCCHHHHHHHHHHHH
Confidence 6666666 4666666654
No 21
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.91 E-value=1.8e-25 Score=199.67 Aligned_cols=147 Identities=15% Similarity=0.201 Sum_probs=102.5
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE----- 149 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~----- 149 (229)
.+|+++||++.|++. ...+|+++||+|++||+++|+||||||||||||+|+|+++ |++|. .++|+++..
T Consensus 2 ~~l~i~~l~~~y~~~--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~~ 76 (353)
T 1oxx_K 2 VRIIVKNVSKVFKKG--KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV---PSTGELYFDDRLVASNGKLI 76 (353)
T ss_dssp CCEEEEEEEEEEGGG--TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC---CSEEEEEETTEEEEETTEES
T ss_pred cEEEEEeEEEEECCE--eeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECccccccc
Confidence 469999999999753 1116899999999999999999999999999999999999 99997 888876422
Q ss_pred -HHhhcCCCcccCcc---hhhhHHHHHHccccccCC---------------------------CCCCCCCCchhhhhhcc
Q 027060 150 -AHARRGAPWTFNPL---LLLNCLKNLRNQGSVYAP---------------------------SFDHGVGDPVEDDILVG 198 (229)
Q Consensus 150 -~~~~~~~~~~~~~~---~~~tv~e~l~~~~~~~~~---------------------------~~~~~~~~~~~~~l~~~ 198 (229)
...++.+++.||.+ +.+|+.+|+.++...... .++.++.+++..+.++.
T Consensus 77 ~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~ 156 (353)
T 1oxx_K 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALV 156 (353)
T ss_dssp SCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHT
T ss_pred CChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHH
Confidence 11234455555554 448999999987543210 11223344444444455
Q ss_pred CCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 199 ~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
.++++|++|||+..||...+.++++++..
T Consensus 157 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 185 (353)
T 1oxx_K 157 KDPSLLLLDEPFSNLDARMRDSARALVKE 185 (353)
T ss_dssp TCCSEEEEESTTTTSCGGGHHHHHHHHHH
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 55555555555555555567777777653
No 22
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.91 E-value=3.9e-25 Score=191.58 Aligned_cols=94 Identities=13% Similarity=0.092 Sum_probs=75.9
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH-----H
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK-----E 149 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~-----~ 149 (229)
++|+++||++.|++.. +|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|. .++|.++. .
T Consensus 20 ~~l~~~~l~~~y~~~~----vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~~~~~~ 92 (279)
T 2ihy_A 20 MLIQLDQIGRMKQGKT----ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP---ATSGTVNLFGKMPGKVGYSA 92 (279)
T ss_dssp EEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTBCCC---CCH
T ss_pred ceEEEEeEEEEECCEE----EEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCeEEEECCEEcccccCCH
Confidence 4799999999998754 8999999999999999999999999999999999999 99997 88887643 1
Q ss_pred HHhhcCCCcccCcch-----hhhHHHHHHccc
Q 027060 150 AHARRGAPWTFNPLL-----LLNCLKNLRNQG 176 (229)
Q Consensus 150 ~~~~~~~~~~~~~~~-----~~tv~e~l~~~~ 176 (229)
...+..+.+.+|... .+|+.||+.++.
T Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~ 124 (279)
T 2ihy_A 93 ETVRQHIGFVSHSLLEKFQEGERVIDVVISGA 124 (279)
T ss_dssp HHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC
T ss_pred HHHcCcEEEEEcCcccccCCCCCHHHHHHhhh
Confidence 122334555555432 259999998753
No 23
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.91 E-value=8.5e-25 Score=186.27 Aligned_cols=143 Identities=16% Similarity=0.147 Sum_probs=103.9
Q ss_pred eEEEeeeeEEcC--ccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH-----
Q 027060 77 VVEARCMDEVYD--ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK----- 148 (229)
Q Consensus 77 ~i~~~~ls~~y~--~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~----- 148 (229)
-|+++||++.|+ +.. +|+++||+|++||+++|+||||||||||+|+|+|+++ |++|. .++|.++.
T Consensus 7 ~~~~~~l~~~y~~~~~~----vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~I~i~g~~~~~~~~~ 79 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPV----ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI---PENGQVLIDGHDLALADPN 79 (247)
T ss_dssp EEEEEEEEEESSTTSCE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTSCHH
T ss_pred ceeEEEEEEEeCCCCcc----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHH
Confidence 489999999993 333 7999999999999999999999999999999999999 99997 88887542
Q ss_pred HHHhhcCC-CcccCcchhhhHHHHHHcccccc--------------------------------CCCCCCCCCCchhhhh
Q 027060 149 EAHARRGA-PWTFNPLLLLNCLKNLRNQGSVY--------------------------------APSFDHGVGDPVEDDI 195 (229)
Q Consensus 149 ~~~~~~~~-~~~~~~~~~~tv~e~l~~~~~~~--------------------------------~~~~~~~~~~~~~~~l 195 (229)
..+..+++ ++.+..+. .|+.+|+.++.... ...++.++.+++..+.
T Consensus 80 ~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAr 158 (247)
T 2ff7_A 80 WLRRQVGVVLQDNVLLN-RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIAR 158 (247)
T ss_dssp HHHHHEEEECSSCCCTT-SBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHH
T ss_pred HHHhcEEEEeCCCcccc-ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHH
Confidence 22333443 33333333 59999998753110 0123445556666666
Q ss_pred hccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 196 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 196 ~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
++..++++|++|||+..||...+..+.+++..
T Consensus 159 aL~~~p~lllLDEPts~LD~~~~~~i~~~l~~ 190 (247)
T 2ff7_A 159 ALVNNPKILIFDEATSALDYESEHVIMRNMHK 190 (247)
T ss_dssp HHTTCCSEEEECCCCSCCCHHHHHHHHHHHHH
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 66667777777777777777778888887754
No 24
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.91 E-value=2.7e-25 Score=188.71 Aligned_cols=144 Identities=19% Similarity=0.185 Sum_probs=100.8
Q ss_pred eEEEeeeeEEc-CccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH---H
Q 027060 77 VVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA---H 151 (229)
Q Consensus 77 ~i~~~~ls~~y-~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~---~ 151 (229)
+|+++||++.| ++.. +|+++||+|++|++++|+||||||||||+|+|+|+++ |++|. .++|.++... .
T Consensus 1 ml~~~~l~~~y~~~~~----vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 73 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQ----ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ---PTAGEITIDGQPIDNISLEN 73 (243)
T ss_dssp CEEEEEEEECSSSSSC----SEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC---CSBSCEEETTEESTTTSCSC
T ss_pred CEEEEEEEEEeCCCCc----eEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHHH
Confidence 48999999999 4433 8999999999999999999999999999999999999 99997 8888754321 1
Q ss_pred hhcCCCcccCcchh--hhHHHHHHccccccC---------------------------------CCCCCCCCCchhhhhh
Q 027060 152 ARRGAPWTFNPLLL--LNCLKNLRNQGSVYA---------------------------------PSFDHGVGDPVEDDIL 196 (229)
Q Consensus 152 ~~~~~~~~~~~~~~--~tv~e~l~~~~~~~~---------------------------------~~~~~~~~~~~~~~l~ 196 (229)
.+..+.+.+|.+.+ .|+.+|+.++..... ..++.++.+++..+.+
T Consensus 74 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAra 153 (243)
T 1mv5_A 74 WRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARA 153 (243)
T ss_dssp CTTTCCEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHH
T ss_pred HHhhEEEEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHH
Confidence 12234444444322 599999987521000 0122334455555555
Q ss_pred ccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 197 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 197 ~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+..++++|++|||+..||...+..+.+++..
T Consensus 154 l~~~p~lllLDEPts~LD~~~~~~i~~~l~~ 184 (243)
T 1mv5_A 154 FLRNPKILMLDEATASLDSESESMVQKALDS 184 (243)
T ss_dssp HHHCCSEEEEECCSCSSCSSSCCHHHHHHHH
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 5556666666777777776677777777653
No 25
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.90 E-value=9.8e-25 Score=186.09 Aligned_cols=93 Identities=23% Similarity=0.225 Sum_probs=73.0
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHH--hcccCCCCce-EecCCCHH----
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKAS-SFDSQDPK---- 148 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gl--l~~~~p~~G~-~~~g~~~~---- 148 (229)
++|+++||++.|++.. +|+++||+|++||+++|+||||||||||+|+|+|+ ++ |++|. .++|.++.
T Consensus 2 ~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~---p~~G~I~~~g~~~~~~~~ 74 (250)
T 2d2e_A 2 SQLEIRDLWASIDGET----ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT---VERGEILLDGENILELSP 74 (250)
T ss_dssp CEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE---EEEEEEEETTEECTTSCH
T ss_pred ceEEEEeEEEEECCEE----EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCceEEEECCEECCCCCH
Confidence 4799999999998754 89999999999999999999999999999999998 78 89997 88887542
Q ss_pred HHHhhcCCCcccCcc---hhhhHHHHHHcc
Q 027060 149 EAHARRGAPWTFNPL---LLLNCLKNLRNQ 175 (229)
Q Consensus 149 ~~~~~~~~~~~~~~~---~~~tv~e~l~~~ 175 (229)
....+.++.+.+|.+ ..+|+.+|+.++
T Consensus 75 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 104 (250)
T 2d2e_A 75 DERARKGLFLAFQYPVEVPGVTIANFLRLA 104 (250)
T ss_dssp HHHHHTTBCCCCCCCC-CCSCBHHHHHHHH
T ss_pred HHHHhCcEEEeccCCccccCCCHHHHHHHH
Confidence 112233444444433 337888888653
No 26
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.90 E-value=1.3e-24 Score=193.61 Aligned_cols=142 Identities=17% Similarity=0.263 Sum_probs=96.4
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-HHhhc
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-AHARR 154 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-~~~~~ 154 (229)
||+++||++.|++. +|+++||+|++||+++|+||||||||||||+|+|+++ |++|. .++|+++.. ...++
T Consensus 1 ml~~~~l~~~y~~~-----~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~~~g~~i~~~~~~~r 72 (348)
T 3d31_A 1 MIEIESLSRKWKNF-----SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV---PDSGRILLDGKDVTDLSPEKH 72 (348)
T ss_dssp CEEEEEEEEECSSC-----EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC---CSEEEEEETTEECTTSCHHHH
T ss_pred CEEEEEEEEEECCE-----EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC---CCCcEEEECCEECCCCchhhC
Confidence 48999999999752 6899999999999999999999999999999999999 99997 888876421 11123
Q ss_pred CCCcccCcc---hhhhHHHHHHccccccCCC-----------CC-CCCCCchhhhhhccCCccE-----EEecCCeeeec
Q 027060 155 GAPWTFNPL---LLLNCLKNLRNQGSVYAPS-----------FD-HGVGDPVEDDILVGLQHKV-----VIVDGNYLFLD 214 (229)
Q Consensus 155 ~~~~~~~~~---~~~tv~e~l~~~~~~~~~~-----------~~-~~~~~~~~~~l~~~~~~rv-----Li~d~~~LlLD 214 (229)
.+++.||.+ +.+|+.||+.++....... +. ....++....++.|+++|+ |+.+|++++||
T Consensus 73 ~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLD 152 (348)
T 3d31_A 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLD 152 (348)
T ss_dssp TCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEE
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 455555543 4489999998864321100 00 1122333444444444444 55555555555
Q ss_pred cc-------CHHHHHHHHh
Q 027060 215 GG-------VWKDVSSMFD 226 (229)
Q Consensus 215 EP-------~~~~l~~~l~ 226 (229)
|| .+.++++++.
T Consensus 153 EP~s~LD~~~~~~l~~~l~ 171 (348)
T 3d31_A 153 EPLSALDPRTQENAREMLS 171 (348)
T ss_dssp SSSTTSCHHHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHH
Confidence 55 5666666654
No 27
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.90 E-value=1.2e-24 Score=184.62 Aligned_cols=90 Identities=17% Similarity=0.210 Sum_probs=72.1
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHH-Hhhc
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEA-HARR 154 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~-~~~~ 154 (229)
+|+++||++.|++ +|+++||+|++ |+++|+||||||||||+|+|+|+++ |++|. .++|+++... ..+.
T Consensus 1 ml~~~~l~~~y~~------~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~ 70 (240)
T 2onk_A 1 MFLKVRAEKRLGN------FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK---PDRGEVRLNGADITPLPPERR 70 (240)
T ss_dssp CCEEEEEEEEETT------EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCTTTS
T ss_pred CEEEEEEEEEeCC------EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCchhhC
Confidence 3789999999974 48999999999 9999999999999999999999999 99997 8888764321 1123
Q ss_pred CCCcccCcc---hhhhHHHHHHccc
Q 027060 155 GAPWTFNPL---LLLNCLKNLRNQG 176 (229)
Q Consensus 155 ~~~~~~~~~---~~~tv~e~l~~~~ 176 (229)
.+++.+|.. ..+|+.||+.++.
T Consensus 71 ~i~~v~q~~~l~~~ltv~enl~~~~ 95 (240)
T 2onk_A 71 GIGFVPQDYALFPHLSVYRNIAYGL 95 (240)
T ss_dssp CCBCCCSSCCCCTTSCHHHHHHTTC
T ss_pred cEEEEcCCCccCCCCcHHHHHHHHH
Confidence 445555543 3479999998864
No 28
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.90 E-value=1.4e-24 Score=183.85 Aligned_cols=85 Identities=12% Similarity=0.141 Sum_probs=68.9
Q ss_pred CeEEEeeeeEEcCc--cccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHh
Q 027060 76 PVVEARCMDEVYDA--LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHA 152 (229)
Q Consensus 76 ~~i~~~~ls~~y~~--~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~ 152 (229)
.+|+++||++.|++ .. +|+++||+|++|++++|+||||||||||+|+|+|+++ |++|. .++|.
T Consensus 2 ~~l~~~~l~~~y~~~~~~----vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~------- 67 (237)
T 2cbz_A 2 NSITVRNATFTWARSDPP----TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVAIKGS------- 67 (237)
T ss_dssp CCEEEEEEEEESCTTSCC----SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE---EEEEEEEECSC-------
T ss_pred CeEEEEEEEEEeCCCCCc----eeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCE-------
Confidence 46999999999973 33 7999999999999999999999999999999999999 99997 77772
Q ss_pred hcCC-CcccCcchhhhHHHHHHccc
Q 027060 153 RRGA-PWTFNPLLLLNCLKNLRNQG 176 (229)
Q Consensus 153 ~~~~-~~~~~~~~~~tv~e~l~~~~ 176 (229)
+++ ++.+. ....|+.+|+.++.
T Consensus 68 -i~~v~Q~~~-~~~~tv~enl~~~~ 90 (237)
T 2cbz_A 68 -VAYVPQQAW-IQNDSLRENILFGC 90 (237)
T ss_dssp -EEEECSSCC-CCSEEHHHHHHTTS
T ss_pred -EEEEcCCCc-CCCcCHHHHhhCcc
Confidence 332 22221 22378999998753
No 29
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.90 E-value=1.5e-24 Score=190.19 Aligned_cols=145 Identities=17% Similarity=0.133 Sum_probs=102.5
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA 152 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~ 152 (229)
.|+++||++.|++.. .+|+||||+|++|+++||+||||||||||+++|+|+++ |++|. .++|.++.. ...
T Consensus 53 ~i~~~~vs~~y~~~~---~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~---p~~G~I~i~G~~i~~~~~~~~ 126 (306)
T 3nh6_A 53 RIEFENVHFSYADGR---ETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD---ISSGCIRIDGQDISQVTQASL 126 (306)
T ss_dssp CEEEEEEEEESSTTC---EEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC---CSEEEEEETTEETTSBCHHHH
T ss_pred eEEEEEEEEEcCCCC---ceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCcEEEECCEEcccCCHHHH
Confidence 599999999996421 27999999999999999999999999999999999999 99997 889976421 122
Q ss_pred hcCCCcccCcch--hhhHHHHHHccccccC--------------------------------CCCCCCCCCchhhhhhcc
Q 027060 153 RRGAPWTFNPLL--LLNCLKNLRNQGSVYA--------------------------------PSFDHGVGDPVEDDILVG 198 (229)
Q Consensus 153 ~~~~~~~~~~~~--~~tv~e~l~~~~~~~~--------------------------------~~~~~~~~~~~~~~l~~~ 198 (229)
+..+.+++|.+. ..|+.+|+.++..... ..++.++.+++..+.++.
T Consensus 127 r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~ 206 (306)
T 3nh6_A 127 RSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTIL 206 (306)
T ss_dssp HHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHH
T ss_pred hcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHH
Confidence 333444444433 2699999998643210 112334445555555555
Q ss_pred CCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 199 ~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
.++++|++|+++..||......+.+.+..
T Consensus 207 ~~p~iLlLDEPts~LD~~~~~~i~~~l~~ 235 (306)
T 3nh6_A 207 KAPGIILLDEATSALDTSNERAIQASLAK 235 (306)
T ss_dssp HCCSEEEEECCSSCCCHHHHHHHHHHHHH
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 56666666666666666667777777654
No 30
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.90 E-value=3.2e-24 Score=183.40 Aligned_cols=85 Identities=15% Similarity=0.102 Sum_probs=68.4
Q ss_pred CeEEEeeeeEEcC-ccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCceEecCCCHHHHHhhc
Q 027060 76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARR 154 (229)
Q Consensus 76 ~~i~~~~ls~~y~-~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~g~~~~~~~~~~ 154 (229)
++|+++||++.|+ +.. +|+++||+|++|++++|+||||||||||+|+|+|+++ |++|.... +.
T Consensus 3 ~~l~i~~l~~~y~~~~~----vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~---------~~ 66 (253)
T 2nq2_C 3 KALSVENLGFYYQAENF----LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR---PIQGKIEV---------YQ 66 (253)
T ss_dssp EEEEEEEEEEEETTTTE----EEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC---CSEEEEEE---------CS
T ss_pred ceEEEeeEEEEeCCCCe----EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEE---------ec
Confidence 4799999999998 544 8999999999999999999999999999999999999 99997431 12
Q ss_pred CCCcccCc---chhhhHHHHHHccc
Q 027060 155 GAPWTFNP---LLLLNCLKNLRNQG 176 (229)
Q Consensus 155 ~~~~~~~~---~~~~tv~e~l~~~~ 176 (229)
.+.+.+|. +..+|+.||+.++.
T Consensus 67 ~i~~v~q~~~~~~~~tv~enl~~~~ 91 (253)
T 2nq2_C 67 SIGFVPQFFSSPFAYSVLDIVLMGR 91 (253)
T ss_dssp CEEEECSCCCCSSCCBHHHHHHGGG
T ss_pred cEEEEcCCCccCCCCCHHHHHHHhh
Confidence 23333333 23468999998754
No 31
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.89 E-value=3.6e-24 Score=180.36 Aligned_cols=135 Identities=13% Similarity=0.105 Sum_probs=91.1
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhc
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARR 154 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~ 154 (229)
.+|+++||++.|++.. ..+|+++||+|++|++++|+||||||||||+|+|+|+++ |++|. .++|. +
T Consensus 5 ~~l~~~~l~~~y~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~--------i 71 (229)
T 2pze_A 5 TEVVMENVTAFWEEGG--TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSGR--------I 71 (229)
T ss_dssp EEEEEEEEEECSSTTS--CCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEECSC--------E
T ss_pred ceEEEEEEEEEeCCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCccEEEECCE--------E
Confidence 4799999999996311 127999999999999999999999999999999999999 99997 77772 3
Q ss_pred CC-CcccCcchhhhHHHHHHcccccc-------------------------------CCCCCCCCCCchhhhhhccCCcc
Q 027060 155 GA-PWTFNPLLLLNCLKNLRNQGSVY-------------------------------APSFDHGVGDPVEDDILVGLQHK 202 (229)
Q Consensus 155 ~~-~~~~~~~~~~tv~e~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~~r 202 (229)
++ ++.+..+. .|+.||+.++.... ...++.++.+++..+.++..+++
T Consensus 72 ~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 150 (229)
T 2pze_A 72 SFCSQFSWIMP-GTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD 150 (229)
T ss_dssp EEECSSCCCCS-BCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCS
T ss_pred EEEecCCcccC-CCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 32 33332333 48888888753210 01122333344444444444555
Q ss_pred EEEecCCeeeecccCHHHHHHH
Q 027060 203 VVIVDGNYLFLDGGVWKDVSSM 224 (229)
Q Consensus 203 vLi~d~~~LlLDEP~~~~l~~~ 224 (229)
++++|||+..||...+..+.+.
T Consensus 151 lllLDEPts~LD~~~~~~i~~~ 172 (229)
T 2pze_A 151 LYLLDSPFGYLDVLTEKEIFES 172 (229)
T ss_dssp EEEEESTTTTSCHHHHHHHHHH
T ss_pred EEEEECcccCCCHHHHHHHHHH
Confidence 5555555555555567777764
No 32
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.89 E-value=6.9e-24 Score=181.90 Aligned_cols=147 Identities=14% Similarity=0.052 Sum_probs=96.8
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HH
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AH 151 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~ 151 (229)
.+|+++||++.|++.. ...+|+++||+|++|++++|+||||||||||+|+|+|+++ | +|. .++|.++.. ..
T Consensus 16 ~~l~i~~l~~~y~~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~-~G~I~i~g~~i~~~~~~~ 90 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQT-NHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD---A-EGDIKIGGKNVNKYNRNS 90 (260)
T ss_dssp CCEEEEEEEECCTTCC-SSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---C-EEEEEETTEEGGGBCHHH
T ss_pred CeEEEEEEEEEeCCCC-cCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC---C-CeEEEECCEEhhhcCHHH
Confidence 3699999999997631 1237999999999999999999999999999999999998 7 797 888876532 11
Q ss_pred hhcCCCcccCcch--hhhHHHHHHccccccC--------------------------------CCCCCCCCCchhhhhhc
Q 027060 152 ARRGAPWTFNPLL--LLNCLKNLRNQGSVYA--------------------------------PSFDHGVGDPVEDDILV 197 (229)
Q Consensus 152 ~~~~~~~~~~~~~--~~tv~e~l~~~~~~~~--------------------------------~~~~~~~~~~~~~~l~~ 197 (229)
.+..+.+.+|.+. ..|+.+|+.++..... ..++.++.+++..+.++
T Consensus 91 ~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL 170 (260)
T 2ghi_A 91 IRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCL 170 (260)
T ss_dssp HHTTEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHH
T ss_pred HhccEEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHH
Confidence 2233444444332 2599999987531000 01222333444444444
Q ss_pred cCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 198 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 198 ~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
..++++|++|+|+..||...+..+.+++..
T Consensus 171 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~ 200 (260)
T 2ghi_A 171 LKDPKIVIFDEATSSLDSKTEYLFQKAVED 200 (260)
T ss_dssp HHCCSEEEEECCCCTTCHHHHHHHHHHHHH
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 444555555555555555567777776653
No 33
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.89 E-value=5.5e-24 Score=183.20 Aligned_cols=93 Identities=20% Similarity=0.233 Sum_probs=70.1
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHH--hcccCCCCce-EecCCCHHH--
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKAS-SFDSQDPKE-- 149 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gl--l~~~~p~~G~-~~~g~~~~~-- 149 (229)
+++|+++||++.|++.. +|+++||+|++||+++|+||||||||||+|+|+|+ ++ |++|. .++|.++..
T Consensus 18 ~~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~---p~~G~I~~~g~~i~~~~ 90 (267)
T 2zu0_C 18 SHMLSIKDLHVSVEDKA----ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYE---VTGGTVEFKGKDLLALS 90 (267)
T ss_dssp --CEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCE---EEEEEEEETTEEGGGSC
T ss_pred CceEEEEeEEEEECCEE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCeEEEECCEECCcCC
Confidence 34799999999997654 89999999999999999999999999999999998 46 88997 888876421
Q ss_pred --HHhhcCCCcccCcc---hhhhHHHHHHc
Q 027060 150 --AHARRGAPWTFNPL---LLLNCLKNLRN 174 (229)
Q Consensus 150 --~~~~~~~~~~~~~~---~~~tv~e~l~~ 174 (229)
...+.++.+.+|.+ ..+++.+|+.+
T Consensus 91 ~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~ 120 (267)
T 2zu0_C 91 PEDRAGEGIFMAFQYPVEIPGVSNQFFLQT 120 (267)
T ss_dssp HHHHHHHTEEEECSSCCCCTTCBHHHHHHH
T ss_pred HHHHhhCCEEEEccCccccccccHHHHHHH
Confidence 12233343444433 33566666654
No 34
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.88 E-value=2.5e-23 Score=177.45 Aligned_cols=89 Identities=25% Similarity=0.284 Sum_probs=70.6
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH-----H
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK-----E 149 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~-----~ 149 (229)
.+|+++||++. . +|+++||+|++||+++|+||||||||||+|+|+|+++ |+ |. .++|.++. .
T Consensus 3 ~~l~~~~l~~~----~----vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~---p~-G~i~~~g~~~~~~~~~~ 70 (249)
T 2qi9_C 3 IVMQLQDVAES----T----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GK-GSIQFAGQPLEAWSATK 70 (249)
T ss_dssp EEEEEEEEEET----T----TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CE-EEEEETTEEGGGSCHHH
T ss_pred cEEEEEceEEE----E----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CC-eEEEECCEECCcCCHHH
Confidence 37999999986 2 7999999999999999999999999999999999999 99 97 88887642 2
Q ss_pred HHhhcCC-CcccCcchhhhHHHHHHccc
Q 027060 150 AHARRGA-PWTFNPLLLLNCLKNLRNQG 176 (229)
Q Consensus 150 ~~~~~~~-~~~~~~~~~~tv~e~l~~~~ 176 (229)
.+..+++ ++.+..+..+|+.||+.++.
T Consensus 71 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 98 (249)
T 2qi9_C 71 LALHRAYLSQQQTPPFATPVWHYLTLHQ 98 (249)
T ss_dssp HHHHEEEECSCCCCCTTCBHHHHHHTTC
T ss_pred HhceEEEECCCCccCCCCcHHHHHHHhh
Confidence 2233443 33333334479999998753
No 35
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.87 E-value=4.8e-23 Score=186.08 Aligned_cols=144 Identities=19% Similarity=0.219 Sum_probs=96.2
Q ss_pred CeEEEeeeeEEcC--ccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---
Q 027060 76 PVVEARCMDEVYD--ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE--- 149 (229)
Q Consensus 76 ~~i~~~~ls~~y~--~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~--- 149 (229)
..|+++||+|.|+ +.. +|+++||+|++||+++|+||||||||||||+|+|+++ ++|. .++|+++..
T Consensus 18 ~~i~~~~l~~~y~~~~~~----~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~----~~G~I~i~G~~i~~~~~ 89 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNA----ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN----TEGEIQIDGVSWDSITL 89 (390)
T ss_dssp CCEEEEEEEEESSSSSCC----SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE----EEEEEEESSCBTTSSCH
T ss_pred CeEEEEEEEEEecCCCeE----EeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC----CCeEEEECCEECCcCCh
Confidence 4699999999994 333 8999999999999999999999999999999999875 5786 899986432
Q ss_pred HHhhcCCCcccCcchh--hhHHHHHHcccccc-------------------CC-C-----------CCCCCCCchhhhhh
Q 027060 150 AHARRGAPWTFNPLLL--LNCLKNLRNQGSVY-------------------AP-S-----------FDHGVGDPVEDDIL 196 (229)
Q Consensus 150 ~~~~~~~~~~~~~~~~--~tv~e~l~~~~~~~-------------------~~-~-----------~~~~~~~~~~~~l~ 196 (229)
...+..+.+.||.+.+ +|+.+|+.+..... .+ . ++.++.+++..+.+
T Consensus 90 ~~~rr~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARA 169 (390)
T 3gd7_A 90 EQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARS 169 (390)
T ss_dssp HHHHHTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHH
T ss_pred HHHhCCEEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHH
Confidence 1223345555555432 69999997432110 00 1 23344444444444
Q ss_pred ccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 197 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 197 ~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+..++++|++|||+..||...+.++++.+..
T Consensus 170 L~~~P~lLLLDEPts~LD~~~~~~l~~~l~~ 200 (390)
T 3gd7_A 170 VLSKAKILLLDEPSAHLDPVTYQIIRRTLKQ 200 (390)
T ss_dssp HHTTCCEEEEESHHHHSCHHHHHHHHHHHHT
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 4444555555555555555457777776653
No 36
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.86 E-value=8e-22 Score=186.27 Aligned_cols=95 Identities=21% Similarity=0.254 Sum_probs=75.7
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA 152 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~ 152 (229)
.|+++||++.|++.. ..+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|. .++|.++.. ...
T Consensus 341 ~i~~~~v~~~y~~~~--~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~~~~~~~~~~ 415 (582)
T 3b5x_A 341 EVDVKDVTFTYQGKE--KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD---VDSGSICLDGHDVRDYKLTNL 415 (582)
T ss_pred eEEEEEEEEEcCCCC--ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEECCEEhhhCCHHHH
Confidence 699999999997521 127999999999999999999999999999999999999 99997 899987532 122
Q ss_pred hcCCCcccCcchh--hhHHHHHHccc
Q 027060 153 RRGAPWTFNPLLL--LNCLKNLRNQG 176 (229)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~ 176 (229)
+..+.+.+|.+.+ .|+.||+.++.
T Consensus 416 ~~~i~~v~Q~~~l~~~tv~eni~~~~ 441 (582)
T 3b5x_A 416 RRHFALVSQNVHLFNDTIANNIAYAA 441 (582)
T ss_pred hcCeEEEcCCCccccccHHHHHhccC
Confidence 3344445554332 69999999864
No 37
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.85 E-value=2.3e-22 Score=172.86 Aligned_cols=90 Identities=12% Similarity=0.104 Sum_probs=69.2
Q ss_pred eEEEeeeeEEcCc----cccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHH
Q 027060 77 VVEARCMDEVYDA----LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAH 151 (229)
Q Consensus 77 ~i~~~~ls~~y~~----~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~ 151 (229)
+|+++|+++.|++ .. +|+++||+|+ |++++|+||||||||||+|+|+|++ |++|. .++|.++....
T Consensus 1 ml~~~~l~~~y~~~~~~~~----il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~----p~~G~I~~~g~~~~~~~ 71 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERF----SLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL----PYSGNIFINGMEVRKIR 71 (263)
T ss_dssp CEEEEEEEEEEEEETTEEE----EEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS----CCEEEEEETTEEGGGCS
T ss_pred CEEEEEEEEEeCCCCccce----eEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC----CCCcEEEECCEECcchH
Confidence 4899999999976 33 8999999999 9999999999999999999999976 58897 88887653211
Q ss_pred hhcCCC-cccCcch-hhhHHHHHHcc
Q 027060 152 ARRGAP-WTFNPLL-LLNCLKNLRNQ 175 (229)
Q Consensus 152 ~~~~~~-~~~~~~~-~~tv~e~l~~~ 175 (229)
.+..+. +.+|.+. .+|+.||+.++
T Consensus 72 ~~~~i~~~v~Q~~~l~~tv~enl~~~ 97 (263)
T 2pjz_A 72 NYIRYSTNLPEAYEIGVTVNDIVYLY 97 (263)
T ss_dssp CCTTEEECCGGGSCTTSBHHHHHHHH
T ss_pred HhhheEEEeCCCCccCCcHHHHHHHh
Confidence 122233 4444322 57899999874
No 38
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.84 E-value=6.9e-22 Score=186.67 Aligned_cols=95 Identities=20% Similarity=0.230 Sum_probs=73.9
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA 152 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~ 152 (229)
.|+++||++.|++.. ..+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|. .++|.++.. ...
T Consensus 341 ~i~~~~v~~~y~~~~--~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~---p~~G~i~~~g~~~~~~~~~~~ 415 (582)
T 3b60_A 341 DLEFRNVTFTYPGRE--VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD---IDEGHILMDGHDLREYTLASL 415 (582)
T ss_dssp CEEEEEEEECSSSSS--CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC---CSEEEEEETTEETTTBCHHHH
T ss_pred cEEEEEEEEEcCCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC---CCCCeEEECCEEccccCHHHH
Confidence 599999999997421 128999999999999999999999999999999999999 99997 889976421 112
Q ss_pred hcCCCcccCcch--hhhHHHHHHccc
Q 027060 153 RRGAPWTFNPLL--LLNCLKNLRNQG 176 (229)
Q Consensus 153 ~~~~~~~~~~~~--~~tv~e~l~~~~ 176 (229)
+..+.+.+|.+. ..|+.||+.++.
T Consensus 416 ~~~i~~v~Q~~~l~~~tv~eni~~~~ 441 (582)
T 3b60_A 416 RNQVALVSQNVHLFNDTVANNIAYAR 441 (582)
T ss_dssp HHTEEEECSSCCCCSSBHHHHHHTTT
T ss_pred HhhCeEEccCCcCCCCCHHHHHhccC
Confidence 223334444332 259999999864
No 39
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.84 E-value=6.4e-22 Score=187.38 Aligned_cols=95 Identities=19% Similarity=0.275 Sum_probs=73.8
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHhh
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHAR 153 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~~ 153 (229)
|+++||++.|++.. ...+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|. .++|.++.. ...+
T Consensus 342 i~~~~v~~~y~~~~-~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~---p~~G~i~~~g~~i~~~~~~~~~ 417 (595)
T 2yl4_A 342 LEFKNVHFAYPARP-EVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD---PASGTISLDGHDIRQLNPVWLR 417 (595)
T ss_dssp EEEEEEEEECSSCT-TSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSC---CSEEEEEETTEETTTBCHHHHH
T ss_pred EEEEEEEEEeCCCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCcEEEECCEEhhhCCHHHHH
Confidence 99999999997531 1227999999999999999999999999999999999999 99997 899976421 1122
Q ss_pred cCCCcccCcch--hhhHHHHHHccc
Q 027060 154 RGAPWTFNPLL--LLNCLKNLRNQG 176 (229)
Q Consensus 154 ~~~~~~~~~~~--~~tv~e~l~~~~ 176 (229)
..+.+.+|.+. ..|+.||+.++.
T Consensus 418 ~~i~~v~Q~~~l~~~tv~eni~~~~ 442 (595)
T 2yl4_A 418 SKIGTVSQEPILFSCSIAENIAYGA 442 (595)
T ss_dssp HSEEEECSSCCCCSSBHHHHHHTTS
T ss_pred hceEEEccCCcccCCCHHHHHhhcC
Confidence 23334444332 269999998864
No 40
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.84 E-value=7.6e-22 Score=186.32 Aligned_cols=95 Identities=16% Similarity=0.149 Sum_probs=74.9
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA 152 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~ 152 (229)
.|+++||+++|++.. ..+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|. .++|.++.. ...
T Consensus 339 ~i~~~~v~~~y~~~~--~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~~~~~~~~~~ 413 (578)
T 4a82_A 339 RIDIDHVSFQYNDNE--APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD---VTSGQILIDGHNIKDFLTGSL 413 (578)
T ss_dssp CEEEEEEEECSCSSS--CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC---CSEEEEEETTEEGGGSCHHHH
T ss_pred eEEEEEEEEEcCCCC--CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHHHH
Confidence 599999999997532 127999999999999999999999999999999999999 99997 899986532 122
Q ss_pred hcCCCcccCcchh--hhHHHHHHccc
Q 027060 153 RRGAPWTFNPLLL--LNCLKNLRNQG 176 (229)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~ 176 (229)
+..+.+.+|.+.+ .|+.||+.++.
T Consensus 414 r~~i~~v~Q~~~l~~~tv~eni~~~~ 439 (578)
T 4a82_A 414 RNQIGLVQQDNILFSDTVKENILLGR 439 (578)
T ss_dssp HHTEEEECSSCCCCSSBHHHHHGGGC
T ss_pred hhheEEEeCCCccCcccHHHHHhcCC
Confidence 2334444444322 59999998864
No 41
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.84 E-value=1e-21 Score=186.06 Aligned_cols=144 Identities=16% Similarity=0.151 Sum_probs=98.4
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----H
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-----A 150 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-----~ 150 (229)
.|+++||++.|++.. .+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|. .++|.++.. .
T Consensus 354 ~i~~~~v~~~y~~~~---~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~i~~~~~~~~ 427 (598)
T 3qf4_B 354 EIEFKNVWFSYDKKK---PVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD---VDRGQILVDGIDIRKIKRSSL 427 (598)
T ss_dssp CEEEEEEECCSSSSS---CSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC---CSEEEEEETTEEGGGSCHHHH
T ss_pred eEEEEEEEEECCCCC---ccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC---CCCeEEEECCEEhhhCCHHHH
Confidence 499999999997532 27999999999999999999999999999999999999 99997 899986532 2
Q ss_pred HhhcCC-CcccCcchhhhHHHHHHccccccC--------------------------------CCCCCCCCCchhhhhhc
Q 027060 151 HARRGA-PWTFNPLLLLNCLKNLRNQGSVYA--------------------------------PSFDHGVGDPVEDDILV 197 (229)
Q Consensus 151 ~~~~~~-~~~~~~~~~~tv~e~l~~~~~~~~--------------------------------~~~~~~~~~~~~~~l~~ 197 (229)
+..+++ ++.+..+ ..|+.||+.++..... ..++.++.+++..++++
T Consensus 428 r~~i~~v~Q~~~lf-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral 506 (598)
T 3qf4_B 428 RSSIGIVLQDTILF-STTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAF 506 (598)
T ss_dssp HHHEEEECTTCCCC-SSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHH
T ss_pred HhceEEEeCCCccc-cccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHH
Confidence 334443 3333322 2699999998642110 01223334444444444
Q ss_pred cCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 198 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 198 ~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
..++++|++||++..||..+.+.+.+.+..
T Consensus 507 ~~~p~illlDEpts~LD~~~~~~i~~~l~~ 536 (598)
T 3qf4_B 507 LANPKILILDEATSNVDTKTEKSIQAAMWK 536 (598)
T ss_dssp HTCCSEEEECCCCTTCCHHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence 445555555555555555567777766653
No 42
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.83 E-value=1.2e-21 Score=185.25 Aligned_cols=145 Identities=20% Similarity=0.162 Sum_probs=99.7
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH-----H
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE-----A 150 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~-----~ 150 (229)
.|+++||++.|++... .+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|. .++|.++.. .
T Consensus 341 ~i~~~~v~~~y~~~~~--~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~---~~~G~i~i~g~~i~~~~~~~~ 415 (587)
T 3qf4_A 341 SVSFENVEFRYFENTD--PVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID---PERGRVEVDELDVRTVKLKDL 415 (587)
T ss_dssp CEEEEEEEECSSSSSC--CSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC---CSEEEEEESSSBGGGBCHHHH
T ss_pred cEEEEEEEEEcCCCCC--cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCcEEEECCEEcccCCHHHH
Confidence 5999999999964321 27999999999999999999999999999999999999 99997 899987532 2
Q ss_pred HhhcCC-CcccCcchhhhHHHHHHccccccC--------------------------------CCCCCCCCCchhhhhhc
Q 027060 151 HARRGA-PWTFNPLLLLNCLKNLRNQGSVYA--------------------------------PSFDHGVGDPVEDDILV 197 (229)
Q Consensus 151 ~~~~~~-~~~~~~~~~~tv~e~l~~~~~~~~--------------------------------~~~~~~~~~~~~~~l~~ 197 (229)
+.++++ ++.+..+. .|+.||+.++..... ..++.++.+|+..++++
T Consensus 416 r~~i~~v~Q~~~lf~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal 494 (587)
T 3qf4_A 416 RGHISAVPQETVLFS-GTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARAL 494 (587)
T ss_dssp HHHEEEECSSCCCCS-EEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHH
T ss_pred HhheEEECCCCcCcC-ccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHH
Confidence 334443 33333322 599999987642110 01223334444444444
Q ss_pred cCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 198 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 198 ~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
..+++++++||++..||..+.+++.+.+..
T Consensus 495 ~~~p~illlDEpts~LD~~~~~~i~~~l~~ 524 (587)
T 3qf4_A 495 VKKPKVLILDDCTSSVDPITEKRILDGLKR 524 (587)
T ss_dssp HTCCSEEEEESCCTTSCHHHHHHHHHHHHH
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 455555555555555555567777776653
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.82 E-value=1.2e-21 Score=170.56 Aligned_cols=130 Identities=12% Similarity=0.107 Sum_probs=78.7
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhc
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARR 154 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~ 154 (229)
++|+++||++.+ .. +|+++||+|++|++++|+||||||||||+|+|+|+++ |++|. .++|. +
T Consensus 39 ~~l~~~~l~~~~--~~----vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~--------i 101 (290)
T 2bbs_A 39 DSLSFSNFSLLG--TP----VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSGR--------I 101 (290)
T ss_dssp -----------C--CC----SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC---EEEEEEECCSC--------E
T ss_pred ceEEEEEEEEcC--ce----EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCE--------E
Confidence 369999999864 22 7999999999999999999999999999999999999 99997 77662 2
Q ss_pred CC-CcccCcchhhhHHHHHHcccccc-------------------------------CCCCCCCCCCchhhhhhccCCcc
Q 027060 155 GA-PWTFNPLLLLNCLKNLRNQGSVY-------------------------------APSFDHGVGDPVEDDILVGLQHK 202 (229)
Q Consensus 155 ~~-~~~~~~~~~~tv~e~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~~r 202 (229)
++ ++.+..+. .|+.+|+. +.... ...++.++.+++..+.++..+++
T Consensus 102 ~~v~Q~~~l~~-~tv~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~ 179 (290)
T 2bbs_A 102 SFCSQNSWIMP-GTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD 179 (290)
T ss_dssp EEECSSCCCCS-SBHHHHHH-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCS
T ss_pred EEEeCCCccCc-ccHHHHhh-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCC
Confidence 32 22222222 48888876 32100 01233344444444555555555
Q ss_pred EEEecCCeeeecccCHHHHHHH
Q 027060 203 VVIVDGNYLFLDGGVWKDVSSM 224 (229)
Q Consensus 203 vLi~d~~~LlLDEP~~~~l~~~ 224 (229)
+|++|+|+..||...+..+.++
T Consensus 180 lllLDEPts~LD~~~~~~i~~~ 201 (290)
T 2bbs_A 180 LYLLDSPFGYLDVLTEKEIFES 201 (290)
T ss_dssp EEEEESTTTTCCHHHHHHHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHH
Confidence 5555555555555567777764
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.78 E-value=5.2e-20 Score=187.72 Aligned_cols=147 Identities=19% Similarity=0.166 Sum_probs=103.5
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA 152 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~ 152 (229)
-|+++||+++|+++. ...+|+|+||+|++||.+||+|+||||||||+++|.|++. |++|. .++|.++.. ...
T Consensus 1076 ~I~f~nVsf~Y~~~~-~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~---p~~G~I~iDG~di~~i~~~~l 1151 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERP-EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD---TLGGEIFIDGSEIKTLNPEHT 1151 (1321)
T ss_dssp CEEEEEEEECCTTSC-SSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC---CSSSEEEETTEETTTBCHHHH
T ss_pred eEEEEEEEEeCCCCC-CCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc---CCCCEEEECCEEhhhCCHHHH
Confidence 499999999997642 2338999999999999999999999999999999999999 99997 999986432 223
Q ss_pred hcCCCcccCcchh--hhHHHHHHccccccC----------------------------------CCCCCCCCCchhhhhh
Q 027060 153 RRGAPWTFNPLLL--LNCLKNLRNQGSVYA----------------------------------PSFDHGVGDPVEDDIL 196 (229)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~~~~~----------------------------------~~~~~~~~~~~~~~l~ 196 (229)
|..+..++|.+.+ -|+++||.++..... ..++.|+.|++..+++
T Consensus 1152 R~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARA 1231 (1321)
T 4f4c_A 1152 RSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARA 1231 (1321)
T ss_dssp HTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHH
T ss_pred HhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHH
Confidence 3344455555543 689999987632100 0122334455555555
Q ss_pred ccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 197 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 197 ~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+..+++||++||++--||..+.+.+.+.++.
T Consensus 1232 llr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~ 1262 (1321)
T 4f4c_A 1232 LVRNPKILLLDEATSALDTESEKVVQEALDR 1262 (1321)
T ss_dssp HHSCCSEEEEESCCCSTTSHHHHHHHHHHTT
T ss_pred HHhCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 5555556666666666665567777777654
No 45
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.77 E-value=1.4e-19 Score=184.08 Aligned_cols=96 Identities=20% Similarity=0.202 Sum_probs=77.8
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---HHh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---AHA 152 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---~~~ 152 (229)
.|+++||++.|++.. ...+|+|+||+|++||++||+||||||||||+++|.|+++ |++|. .++|.++.. ...
T Consensus 1030 ~i~~~~v~~~y~~~~-~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~---p~~G~I~i~g~~i~~~~~~~~ 1105 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTRP-SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD---PMAGSVFLDGKEIKQLNVQWL 1105 (1284)
T ss_dssp CEEEEEEEBCCSCGG-GCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC---CSEEEEESSSSCTTSSCHHHH
T ss_pred cEEEEEEEEECCCCC-CCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEEcccCCHHHH
Confidence 599999999997642 2237999999999999999999999999999999999999 99997 899987532 223
Q ss_pred hcCCCcccCcchh--hhHHHHHHccc
Q 027060 153 RRGAPWTFNPLLL--LNCLKNLRNQG 176 (229)
Q Consensus 153 ~~~~~~~~~~~~~--~tv~e~l~~~~ 176 (229)
+..+.+.+|++.+ .|+.||+.++.
T Consensus 1106 r~~i~~v~Q~~~l~~~ti~eNi~~~~ 1131 (1284)
T 3g5u_A 1106 RAQLGIVSQEPILFDCSIAENIAYGD 1131 (1284)
T ss_dssp TTSCEEEESSCCCCSSBHHHHHTCCC
T ss_pred HhceEEECCCCccccccHHHHHhccC
Confidence 4456666665533 79999998764
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.77 E-value=1.1e-19 Score=184.90 Aligned_cols=95 Identities=22% Similarity=0.211 Sum_probs=75.0
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH-----HH
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK-----EA 150 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~-----~~ 150 (229)
.|+++||++.|++.. ...+|+|+||+|++||++||+||||||||||+++|.|+++ |++|. .++|.++. ..
T Consensus 387 ~i~~~~v~~~y~~~~-~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~---~~~G~i~i~g~~i~~~~~~~~ 462 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRK-EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD---PLDGMVSIDGQDIRTINVRYL 462 (1284)
T ss_dssp CEEEEEEEECCSSTT-SCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSC---CSEEEEEETTEEGGGSCHHHH
T ss_pred eEEEEEEEEEcCCCC-CCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEHHhCCHHHH
Confidence 499999999997532 2238999999999999999999999999999999999999 99997 89998643 23
Q ss_pred HhhcCC-CcccCcchhhhHHHHHHccc
Q 027060 151 HARRGA-PWTFNPLLLLNCLKNLRNQG 176 (229)
Q Consensus 151 ~~~~~~-~~~~~~~~~~tv~e~l~~~~ 176 (229)
+..+++ ++.+..+. .|+.||+.++.
T Consensus 463 r~~i~~v~Q~~~l~~-~ti~eNi~~g~ 488 (1284)
T 3g5u_A 463 REIIGVVSQEPVLFA-TTIAENIRYGR 488 (1284)
T ss_dssp HHHEEEECSSCCCCS-SCHHHHHHHHC
T ss_pred HhheEEEcCCCccCC-ccHHHHHhcCC
Confidence 334443 33333222 59999999864
No 47
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.75 E-value=1.1e-18 Score=177.89 Aligned_cols=145 Identities=16% Similarity=0.131 Sum_probs=106.0
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH-----HH
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK-----EA 150 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~-----~~ 150 (229)
-|+++||+++|++.. ...+|+|+||+|++|+.++|+||+|||||||+++|.|++. |++|. .++|.++. ..
T Consensus 415 ~I~~~nvsF~Y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~---~~~G~I~idG~~i~~~~~~~l 490 (1321)
T 4f4c_A 415 DITVENVHFTYPSRP-DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD---VLKGKITIDGVDVRDINLEFL 490 (1321)
T ss_dssp CEEEEEEEECCSSST-TSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC---CSEEEEEETTEETTTSCHHHH
T ss_pred cEEEEEeeeeCCCCC-CCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccc---cccCcccCCCccchhccHHHH
Confidence 499999999997642 2348999999999999999999999999999999999999 99997 89997643 33
Q ss_pred HhhcCCCcccCcch--hhhHHHHHHccccccC--------------------------------CCCCCCCCCchhhhhh
Q 027060 151 HARRGAPWTFNPLL--LLNCLKNLRNQGSVYA--------------------------------PSFDHGVGDPVEDDIL 196 (229)
Q Consensus 151 ~~~~~~~~~~~~~~--~~tv~e~l~~~~~~~~--------------------------------~~~~~~~~~~~~~~l~ 196 (229)
+..++ +++|.+. .-|++||+.++..... ...+.|+++|+..+++
T Consensus 491 r~~i~--~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARA 568 (1321)
T 4f4c_A 491 RKNVA--VVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARA 568 (1321)
T ss_dssp HHHEE--EECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHH
T ss_pred hhccc--ccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHH
Confidence 44444 4444443 3799999998743110 1122345566666666
Q ss_pred ccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 197 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 197 ~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+..+++++++|+++--||..+.+.+.+.++.
T Consensus 569 l~~~~~IliLDE~tSaLD~~te~~i~~~l~~ 599 (1321)
T 4f4c_A 569 LVRNPKILLLDEATSALDAESEGIVQQALDK 599 (1321)
T ss_dssp HTTCCSEEEEESTTTTSCTTTHHHHHHHHHH
T ss_pred HccCCCEEEEecccccCCHHHHHHHHHHHHH
Confidence 6666666777777777776677777776653
No 48
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.74 E-value=8.2e-19 Score=164.38 Aligned_cols=87 Identities=20% Similarity=0.179 Sum_probs=65.8
Q ss_pred CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHh
Q 027060 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHA 152 (229)
Q Consensus 74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~ 152 (229)
..++++++++++.|++. .|+.+||+|++||++||+||||||||||+|+|+|+++ |++|. .+++..+..
T Consensus 266 ~~~~l~~~~l~~~~~~~-----~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~~~~i~~--- 334 (538)
T 3ozx_A 266 LKTKMKWTKIIKKLGDF-----QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT---ADEGSVTPEKQILSY--- 334 (538)
T ss_dssp CCEEEEECCEEEEETTE-----EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSBCCEESSCCCEEE---
T ss_pred ccceEEEcceEEEECCE-----EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCeeeEe---
Confidence 34579999999999874 4778899999999999999999999999999999999 99997 555543210
Q ss_pred hcCCCcccCcchhhhHHHHHHc
Q 027060 153 RRGAPWTFNPLLLLNCLKNLRN 174 (229)
Q Consensus 153 ~~~~~~~~~~~~~~tv~e~l~~ 174 (229)
+++........++.+|+.+
T Consensus 335 ---~~q~~~~~~~~tv~~~l~~ 353 (538)
T 3ozx_A 335 ---KPQRIFPNYDGTVQQYLEN 353 (538)
T ss_dssp ---ECSSCCCCCSSBHHHHHHH
T ss_pred ---echhcccccCCCHHHHHHH
Confidence 1111111123677787765
No 49
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.73 E-value=1.3e-18 Score=165.10 Aligned_cols=145 Identities=15% Similarity=0.119 Sum_probs=90.1
Q ss_pred CeEEE--------eeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-------
Q 027060 76 PVVEA--------RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS------- 140 (229)
Q Consensus 76 ~~i~~--------~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~------- 140 (229)
.+|++ +||+++|++.. .+|+++| +|.+||++||+||||||||||+|+|+|+++ |++|.
T Consensus 82 ~~i~i~~l~~~~~~~ls~~yg~~~---~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~---p~~G~~~~~~~~ 154 (607)
T 3bk7_A 82 NAISIVNLPEQLDEDCVHRYGVNA---FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLI---PNLCEDNDSWDN 154 (607)
T ss_dssp CCCEEEEECTTGGGSEEEECSTTC---CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSC---CCTTTTCCCHHH
T ss_pred ceEEEecCCccccCCeEEEECCCC---eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCC---CCCCccccccch
Confidence 45788 89999997641 2788999 999999999999999999999999999999 99996
Q ss_pred ---EecCCCHHHH-----HhhcCCCcccCcc----h--hhhHHHHHHccccc----------------c--CCCCCCCCC
Q 027060 141 ---SFDSQDPKEA-----HARRGAPWTFNPL----L--LLNCLKNLRNQGSV----------------Y--APSFDHGVG 188 (229)
Q Consensus 141 ---~~~g~~~~~~-----~~~~~~~~~~~~~----~--~~tv~e~l~~~~~~----------------~--~~~~~~~~~ 188 (229)
.+.|.++... ..+..+...+|.. . ..++.+++...... . ...++.++.
T Consensus 155 ~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGek 234 (607)
T 3bk7_A 155 VIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGEL 234 (607)
T ss_dssp HHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHH
T ss_pred hhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHH
Confidence 2456654321 1122333323221 1 12677776432110 0 011233444
Q ss_pred CchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 189 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 189 ~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
+++..+.++..++++|++|||+..||...+..+.+++..
T Consensus 235 QRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~ 273 (607)
T 3bk7_A 235 QRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRR 273 (607)
T ss_dssp HHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 444444444455555555555555555556667766653
No 50
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.73 E-value=1.5e-18 Score=164.71 Aligned_cols=136 Identities=14% Similarity=0.137 Sum_probs=87.7
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCceEecCCCHHHHHhhc
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARR 154 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~g~~~~~~~~~~ 154 (229)
..+++++|+++.|++. .|++++|+|.+||++||+||||||||||+|+|+|+++ |++|..... .
T Consensus 355 ~~~l~~~~l~~~~~~~-----~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~~---------~ 417 (607)
T 3bk7_A 355 ETLVEYPRLVKDYGSF-----KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE---PTEGKVEWD---------L 417 (607)
T ss_dssp CEEEEECCEEEECSSC-----EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC---CSBSCCCCC---------C
T ss_pred ceEEEEeceEEEecce-----EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEEe---------e
Confidence 4589999999999763 5889999999999999999999999999999999999 999973221 1
Q ss_pred CCCcccCcc---hhhhHHHHHHcc-c-cc-------------c--------CCCCCCCCCCchhhhhhccCCccEEEecC
Q 027060 155 GAPWTFNPL---LLLNCLKNLRNQ-G-SV-------------Y--------APSFDHGVGDPVEDDILVGLQHKVVIVDG 208 (229)
Q Consensus 155 ~~~~~~~~~---~~~tv~e~l~~~-~-~~-------------~--------~~~~~~~~~~~~~~~l~~~~~~rvLi~d~ 208 (229)
.+.+.+|.. ..+|+.+++... . .. . ...++.++.+++..+.++...+++|++||
T Consensus 418 ~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDE 497 (607)
T 3bk7_A 418 TVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDE 497 (607)
T ss_dssp CEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEEC
T ss_pred EEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 222233322 225666665432 0 00 0 01122334444444444455555555555
Q ss_pred CeeeecccCHHHHHHHHhh
Q 027060 209 NYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 209 ~~LlLDEP~~~~l~~~l~~ 227 (229)
|+..||...+..+.+++..
T Consensus 498 Pt~~LD~~~~~~l~~~l~~ 516 (607)
T 3bk7_A 498 PSAYLDVEQRLAVSRAIRH 516 (607)
T ss_dssp TTTTCCHHHHHHHHHHHHH
T ss_pred CccCCCHHHHHHHHHHHHH
Confidence 5555555567777776653
No 51
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.73 E-value=1.7e-18 Score=162.29 Aligned_cols=59 Identities=17% Similarity=0.340 Sum_probs=54.1
Q ss_pred CCCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce
Q 027060 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (229)
Q Consensus 74 ~~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~ 140 (229)
..++++++|+++.|++. .|++++|+|.+||++||+||||||||||+|+|+|+++ |++|.
T Consensus 284 ~~~~l~~~~l~~~~~~~-----~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~ 342 (538)
T 1yqt_A 284 RETLVTYPRLVKDYGSF-----RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE---PTEGK 342 (538)
T ss_dssp CCEEEEECCEEEEETTE-----EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC---CSBCC
T ss_pred CCeEEEEeeEEEEECCE-----EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeE
Confidence 34589999999999763 5889999999999999999999999999999999999 99997
No 52
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.72 E-value=2.4e-18 Score=161.22 Aligned_cols=56 Identities=25% Similarity=0.314 Sum_probs=48.2
Q ss_pred EEE-eeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce
Q 027060 78 VEA-RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (229)
Q Consensus 78 i~~-~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~ 140 (229)
.++ +||+|+|++.. .+++++| +|.+||++||+||||||||||+|+|+|+++ |++|.
T Consensus 21 ~~~~~~ls~~yg~~~---~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~---p~~G~ 77 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNA---FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLI---PNLCG 77 (538)
T ss_dssp ---CCCEEEECSTTC---CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC---CCTTT
T ss_pred hhHhcCcEEEECCcc---ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCc
Confidence 455 68999998641 2688999 999999999999999999999999999999 99997
No 53
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.65 E-value=8.1e-17 Score=159.01 Aligned_cols=65 Identities=20% Similarity=0.298 Sum_probs=57.1
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecC
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS 144 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g 144 (229)
.++|+++|+++.|++.. ..+|+|+||+|.+|+++||+||||||||||+|+|+|+++ |++|. .+++
T Consensus 669 ~~mL~v~nLs~~Y~g~~--~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~---P~sG~I~~~~ 734 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPGTS--KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL---PTSGEVYTHE 734 (986)
T ss_dssp SEEEEEEEEEECCTTCS--SCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC---CSEEEEEECT
T ss_pred CceEEEEeeEEEeCCCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEEcC
Confidence 45899999999997521 127899999999999999999999999999999999999 99997 6654
No 54
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.61 E-value=1.5e-16 Score=152.46 Aligned_cols=41 Identities=24% Similarity=0.313 Sum_probs=30.9
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHH---------------------HHHHHHhcccCCCCc
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLA---------------------AEVVRRINKIWPQKA 139 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLl---------------------k~L~gll~~~~p~~G 139 (229)
+|+||||+|++||++||+||||||||||+ +++.|+.. |+.|
T Consensus 33 ~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~---~~~~ 94 (670)
T 3ux8_A 33 NLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEK---PDVD 94 (670)
T ss_dssp TCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC-----------------CCCS
T ss_pred ceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhccccc---CCcc
Confidence 79999999999999999999999999998 88888888 7743
No 55
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.61 E-value=9.9e-18 Score=139.13 Aligned_cols=44 Identities=25% Similarity=0.269 Sum_probs=38.1
Q ss_pred EEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce
Q 027060 85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (229)
Q Consensus 85 ~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~ 140 (229)
|.|++.. +|+++ ++|++++|+||||||||||+++|+|+ + |++|.
T Consensus 8 k~~g~~~----~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~---p~~G~ 51 (208)
T 3b85_A 8 KTLGQKH----YVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A---LQSKQ 51 (208)
T ss_dssp CSHHHHH----HHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H---HHTTS
T ss_pred CCHhHHH----HHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C---CcCCe
Confidence 3555543 78885 89999999999999999999999999 9 99995
No 56
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.60 E-value=2.8e-16 Score=149.07 Aligned_cols=132 Identities=14% Similarity=0.180 Sum_probs=84.5
Q ss_pred eeeeEEcCccccccccccceeeeecCC-----cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCceEecCCCHHHHHhhcC
Q 027060 81 RCMDEVYDALAQRLLPTSALASNVNVK-----HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRG 155 (229)
Q Consensus 81 ~~ls~~y~~~~~~~~~l~~isl~i~~G-----e~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~g~~~~~~~~~~~ 155 (229)
.++++.|++.. .++++++|++.+| |++||+||||||||||+|+|+|+++ |++|..+.+. +
T Consensus 350 ~~~~~~y~~~~---~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~---p~~G~~~~~~---------~ 414 (608)
T 3j16_B 350 ASRAFSYPSLK---KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK---PDEGQDIPKL---------N 414 (608)
T ss_dssp SSSCCEECCEE---EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC---CSBCCCCCSC---------C
T ss_pred cceeEEecCcc---cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC---CCCCcCccCC---------c
Confidence 56778887532 2688999999998 8899999999999999999999999 9998522111 1
Q ss_pred CCcccCcc---hhhhHHHHHHcc---------------------ccc--cCCCCCCCCCCchhhhhhccCCccEEEecCC
Q 027060 156 APWTFNPL---LLLNCLKNLRNQ---------------------GSV--YAPSFDHGVGDPVEDDILVGLQHKVVIVDGN 209 (229)
Q Consensus 156 ~~~~~~~~---~~~tv~e~l~~~---------------------~~~--~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~ 209 (229)
+.+.+|.. ...++.+++... ... .....+.++.+++..+.++..++++|++|||
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEP 494 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEP 494 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCT
T ss_pred EEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 11111111 113444444321 101 1113344556666666666666777777777
Q ss_pred eeeecccCHHHHHHHHhh
Q 027060 210 YLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 210 ~LlLDEP~~~~l~~~l~~ 227 (229)
+..||...+..+.+++..
T Consensus 495 T~gLD~~~~~~i~~ll~~ 512 (608)
T 3j16_B 495 SAYLDSEQRIICSKVIRR 512 (608)
T ss_dssp TTTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 777776667777776653
No 57
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.60 E-value=3.8e-16 Score=154.25 Aligned_cols=49 Identities=22% Similarity=0.268 Sum_probs=45.1
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHH
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~g 129 (229)
.|...|+++.|++.. +|+++||+|.+|++++|+||||||||||+|+|+|
T Consensus 435 ~L~~~~ls~~yg~~~----iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKI----LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEeeEEEEECCEE----eEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 566679999998765 8999999999999999999999999999999996
No 58
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.59 E-value=1e-16 Score=131.97 Aligned_cols=122 Identities=30% Similarity=0.505 Sum_probs=84.3
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCC---Cce-EecCCCHHH-HH------hhcCCCcccCcchhhhHHHHH
Q 027060 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KAS-SFDSQDPKE-AH------ARRGAPWTFNPLLLLNCLKNL 172 (229)
Q Consensus 104 i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~---~G~-~~~g~~~~~-~~------~~~~~~~~~~~~~~~tv~e~l 172 (229)
.++|++++|+||||||||||+++|+|++. |. .|. .++|..... .. .+.+++..++...+...+..+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~---~~g~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 95 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS---AQGLPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETFDFEGFQRLCHAL 95 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH---HTTCCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGBCHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh---hcCCceEEEecCCCcCCHHHHHHhcccccCCCCchhhHHHHHHHHHHH
Confidence 57899999999999999999999999998 64 454 566653211 11 123566666666555666777
Q ss_pred HccccccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHHhhh
Q 027060 173 RNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 228 (229)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~~ 228 (229)
..+..+..+.++.+..........+....++++.|++++++|||.|..+.+.+|.+
T Consensus 96 ~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~ 151 (208)
T 3c8u_A 96 KHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVS 151 (208)
T ss_dssp HHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEE
T ss_pred hcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCEE
Confidence 66655555666666554433333333334899999999999999988777766654
No 59
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.59 E-value=7.4e-16 Score=146.16 Aligned_cols=139 Identities=15% Similarity=0.169 Sum_probs=82.3
Q ss_pred eeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCceE------------ecCCCHHH
Q 027060 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS------------FDSQDPKE 149 (229)
Q Consensus 82 ~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~~------------~~g~~~~~ 149 (229)
+++++|+... ..+++++ .+.+||++||+||||||||||+|+|+|+++ |++|.. +.|.+...
T Consensus 82 ~~~~~Y~~~~---~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~---P~~G~i~~~~~~~~~~~~~~g~~~~~ 154 (608)
T 3j16_B 82 HVTHRYSANS---FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQK---PNLGRFDDPPEWQEIIKYFRGSELQN 154 (608)
T ss_dssp TEEEECSTTS---CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC---CCTTTTCCSSCHHHHHHHTTTSTHHH
T ss_pred CeEEEECCCc---eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCC---CCCceEecccchhhhhheecChhhhh
Confidence 5678887542 2455555 689999999999999999999999999999 999963 23333221
Q ss_pred HH-----hhcCC---CcccCcc------hhhhHHHHHH------------------cccccc--CCCCCCCCCCchhhhh
Q 027060 150 AH-----ARRGA---PWTFNPL------LLLNCLKNLR------------------NQGSVY--APSFDHGVGDPVEDDI 195 (229)
Q Consensus 150 ~~-----~~~~~---~~~~~~~------~~~tv~e~l~------------------~~~~~~--~~~~~~~~~~~~~~~l 195 (229)
.. ..... ++..+.. ...++.+++. +..... ...++.++.+++..+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAr 234 (608)
T 3j16_B 155 YFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGM 234 (608)
T ss_dssp HHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHH
T ss_pred hhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHH
Confidence 10 01111 0110000 0012222221 111111 1234455666666666
Q ss_pred hccCCccEEEecCCeeeecccCHHHHHHHHhh
Q 027060 196 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 196 ~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
++..++++|++|||+..||......+.+++..
T Consensus 235 aL~~~p~llllDEPts~LD~~~~~~l~~~l~~ 266 (608)
T 3j16_B 235 SCVQEADVYMFDEPSSYLDVKQRLNAAQIIRS 266 (608)
T ss_dssp HHHSCCSEEEEECTTTTCCHHHHHHHHHHHHG
T ss_pred HHHhCCCEEEEECcccCCCHHHHHHHHHHHHH
Confidence 66667777777777777777677777777654
No 60
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.57 E-value=3.6e-17 Score=143.57 Aligned_cols=131 Identities=20% Similarity=0.261 Sum_probs=82.1
Q ss_pred CCeEEEeeeeEEcCccccccccccceeee-----------------------ecCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASN-----------------------VNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~-----------------------i~~Ge~v~IiGpNGsGKSTLlk~L~gll 131 (229)
...|++++|++.|+. +++++++. +.+|+++||+||||||||||+++|+|++
T Consensus 41 ~~~i~~~~v~~~y~p------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 41 GEQIDLLEVEEVYLP------LARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp TCCCCHHHHHHTHHH------HHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEeeehhhhhhh------HHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 346999999999963 34444443 8999999999999999999999999999
Q ss_pred cccCCCCc---e-EecCCC---HHHHHhhcC------CCcccCcchhhhHHHHHHcccc-ccCCCCCCCCCCchhhhhhc
Q 027060 132 NKIWPQKA---S-SFDSQD---PKEAHARRG------APWTFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPVEDDILV 197 (229)
Q Consensus 132 ~~~~p~~G---~-~~~g~~---~~~~~~~~~------~~~~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~~l~~ 197 (229)
+ |..| . .+.-.. ........+ .+..++...+...++.+..+.. ...+.++.++.+++..+.++
T Consensus 115 ~---~~~G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G~~qRv~~a~al 191 (312)
T 3aez_A 115 A---RWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIPGAEQV 191 (312)
T ss_dssp H---TSTTCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHHTTCSCEEEEEEETTTTEEEEEEEEE
T ss_pred c---ccCCCCeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhCCCcccCCcccCChhhhhhhhhHHHh
Confidence 9 8765 2 221110 111122222 1212222223444555542222 33456777888777666666
Q ss_pred cCCccEEEecCCeeeec
Q 027060 198 GLQHKVVIVDGNYLFLD 214 (229)
Q Consensus 198 ~~~~rvLi~d~~~LlLD 214 (229)
...++|||+|++++++|
T Consensus 192 ~~~p~ilIlDep~~~~d 208 (312)
T 3aez_A 192 VRHPDILILEGLNVLQT 208 (312)
T ss_dssp ECSCSEEEEECTTTTCC
T ss_pred ccCCCEEEECCccccCC
Confidence 66677777777777765
No 61
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.54 E-value=2.3e-15 Score=140.99 Aligned_cols=52 Identities=19% Similarity=0.245 Sum_probs=43.0
Q ss_pred eeeeEEcCccccccccccceeeee-cCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce
Q 027060 81 RCMDEVYDALAQRLLPTSALASNV-NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (229)
Q Consensus 81 ~~ls~~y~~~~~~~~~l~~isl~i-~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~ 140 (229)
++.+.+|+... |+-..+.+ ++||++||+||||||||||+|+|+|+++ |++|.
T Consensus 3 ~~~~~~~~~~~-----f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~---p~~G~ 55 (538)
T 3ozx_A 3 GEVIHRYKVNG-----FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEII---PNFGD 55 (538)
T ss_dssp CCEEEESSTTS-----CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSC---CCTTC
T ss_pred CCCceecCCCc-----eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCCc
Confidence 45788998753 33444554 4999999999999999999999999999 99995
No 62
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.7e-17 Score=152.83 Aligned_cols=82 Identities=11% Similarity=0.011 Sum_probs=61.9
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc-e--EecCCCHHHHH
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-S--SFDSQDPKEAH 151 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G-~--~~~g~~~~~~~ 151 (229)
.++++++||++.|+ +++|++++|++++|+||||||||||+|+|+|++. |++| . .++| +.
T Consensus 116 ~~mi~~~nl~~~y~----------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~---p~~G~~pI~vdg-~~---- 177 (460)
T 2npi_A 116 HTMKYIYNLHFMLE----------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL---KFNAYQPLYINL-DP---- 177 (460)
T ss_dssp CTHHHHHHHHHHHH----------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH---HHHCCCCEEEEC-CT----
T ss_pred cchhhhhhhhehhh----------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc---ccCCceeEEEcC-Cc----
Confidence 34677888887774 6889999999999999999999999999999999 9999 4 5666 22
Q ss_pred hhcCCCcccCcc---h---hhhHHHHHHccc
Q 027060 152 ARRGAPWTFNPL---L---LLNCLKNLRNQG 176 (229)
Q Consensus 152 ~~~~~~~~~~~~---~---~~tv~e~l~~~~ 176 (229)
+.++.+.+|.. . .+++.+|+ ++.
T Consensus 178 -~~~i~~vpq~~~l~~~~~~~tv~eni-~~~ 206 (460)
T 2npi_A 178 -QQPIFTVPGCISATPISDILDAQLPT-WGQ 206 (460)
T ss_dssp -TSCSSSCSSCCEEEECCSCCCTTCTT-CSC
T ss_pred -cCCeeeeccchhhcccccccchhhhh-ccc
Confidence 23444444443 1 25777777 643
No 63
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.50 E-value=4.7e-15 Score=118.64 Aligned_cols=101 Identities=14% Similarity=0.029 Sum_probs=60.7
Q ss_pred ceeeeecCCcEEEEEcCCCCcHHHHHH------------HHHHHhcccCCCCce-EecCCCHHHHHhhcCCCcccCcchh
Q 027060 99 ALASNVNVKHIVGLAGPPGAGKSTLAA------------EVVRRINKIWPQKAS-SFDSQDPKEAHARRGAPWTFNPLLL 165 (229)
Q Consensus 99 ~isl~i~~Ge~v~IiGpNGsGKSTLlk------------~L~gll~~~~p~~G~-~~~g~~~~~~~~~~~~~~~~~~~~~ 165 (229)
|+||++++||+++|+||||||||||+| .+.|++. ++.|. .+.+.......
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~---~~~~~~~~~~~~~~~~~-------------- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMS---DDENDQTVTGAAFDVLH-------------- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHC---SSTTCGGGHHHHHHHHH--------------
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhc---CcccchhhHHHHHHHHH--------------
Confidence 689999999999999999999999999 6666666 55543 22211000000
Q ss_pred hhHHHHHHccccc--c-CCCCCCCCCCchhhhhhccCCccEEEecCCeeeeccc
Q 027060 166 LNCLKNLRNQGSV--Y-APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG 216 (229)
Q Consensus 166 ~tv~e~l~~~~~~--~-~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP 216 (229)
......+..+... . ....+.+..+++..+.++...++++++|+|+-.||+.
T Consensus 64 ~~~~~~~~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~ 117 (171)
T 4gp7_A 64 YIVSKRLQLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQER 117 (171)
T ss_dssp HHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHH
T ss_pred HHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHH
Confidence 0011111111111 0 0111234456666667777778888888888888876
No 64
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.50 E-value=1.4e-16 Score=126.88 Aligned_cols=88 Identities=18% Similarity=0.151 Sum_probs=63.8
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhcCC
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARRGA 156 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~~~ 156 (229)
++.+++++.|++.. +++++||+|++|++++|+||||||||||+|+|+|++ |++|. .+.|.++........+
T Consensus 8 ~~~~~~~~~~g~~~----~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l----~~~G~V~~~g~~i~~~~~~~~~ 79 (158)
T 1htw_A 8 IPDEFSMLRFGKKF----AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI----GHQGNVKSPTYTLVEEYNIAGK 79 (158)
T ss_dssp ECSHHHHHHHHHHH----HHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT----TCCSCCCCCTTTCEEEEEETTE
T ss_pred cCCHHHHHHHHHHH----HHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC----CCCCeEEECCEeeeeeccCCCc
Confidence 33456788887654 789999999999999999999999999999999987 46786 7778765321111122
Q ss_pred -CcccCcchhhhHHHHHHc
Q 027060 157 -PWTFNPLLLLNCLKNLRN 174 (229)
Q Consensus 157 -~~~~~~~~~~tv~e~l~~ 174 (229)
++.++.+ .+++.+++.+
T Consensus 80 ~~q~~~l~-~ltv~e~l~~ 97 (158)
T 1htw_A 80 MIYHFDLY-RLADPEELEF 97 (158)
T ss_dssp EEEEEECT-TCSCTTHHHH
T ss_pred ceeccccc-cCCcHHHHHH
Confidence 3333333 4788888854
No 65
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.49 E-value=6.6e-16 Score=134.95 Aligned_cols=131 Identities=19% Similarity=0.247 Sum_probs=90.3
Q ss_pred eEEEeeeeEEcCccccccccccceeeee-------------------cCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCC
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNV-------------------NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ 137 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i-------------------~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~ 137 (229)
+|++++|++.|+. +++++++.+ .+|+++||+|+||||||||+++|+|++.. .|+
T Consensus 37 ~i~~~~v~~~y~~------~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~-~~~ 109 (308)
T 1sq5_A 37 DLSLEEVAEIYLP------LSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSR-WPE 109 (308)
T ss_dssp TCCHHHHHHTHHH------HHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTT-STT
T ss_pred ccchHhHHHHHHH------HHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhh-CCC
Confidence 5899999999942 678999988 89999999999999999999999998741 146
Q ss_pred Cce-Ee---cCCCHH-HHHhhcCCCcccCcchhhhHHHHHHcccc-------ccCCCCCCCCCCchhhhhhccCCccEEE
Q 027060 138 KAS-SF---DSQDPK-EAHARRGAPWTFNPLLLLNCLKNLRNQGS-------VYAPSFDHGVGDPVEDDILVGLQHKVVI 205 (229)
Q Consensus 138 ~G~-~~---~g~~~~-~~~~~~~~~~~~~~~~~~tv~e~l~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~rvLi 205 (229)
+|. .+ +|.... ......++.+.+..+..+++.+++.+... +..|.++...+++..........++++|
T Consensus 110 ~G~i~vi~~d~~~~~~~~~~~~~~vq~~~~~~~~~~~~~~~~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~ivI 189 (308)
T 1sq5_A 110 HRRVELITTDGFLHPNQVLKERGLMKKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILI 189 (308)
T ss_dssp CCCEEEEEGGGGBCCHHHHHHHTCTTCTTSGGGBCHHHHHHHHHHHTTTCSCEEECCEETTTTEECTTCCEEEC-CCEEE
T ss_pred CCeEEEEecCCccCcHHHHHhCCEeecCCCCCCccHHHHHHHHHHHhCCCCceecccccccccCcccccceecCCCCEEE
Confidence 775 66 665421 22333454444444445677777665322 3345666666665543333334578999
Q ss_pred ecCCeeeec
Q 027060 206 VDGNYLFLD 214 (229)
Q Consensus 206 ~d~~~LlLD 214 (229)
+|+++++.+
T Consensus 190 lEG~~l~~~ 198 (308)
T 1sq5_A 190 LEGLNVLQS 198 (308)
T ss_dssp EECTTTTCC
T ss_pred ECchhhCCC
Confidence 999999887
No 66
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.45 E-value=6.1e-15 Score=121.21 Aligned_cols=35 Identities=31% Similarity=0.451 Sum_probs=26.3
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+++| .+|++|++++|+||||||||||+|+|+|+++
T Consensus 11 ~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 11 TARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ----------CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 6677 7899999999999999999999999999985
No 67
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.43 E-value=3.6e-14 Score=135.87 Aligned_cols=33 Identities=30% Similarity=0.508 Sum_probs=31.2
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHHHHHH
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVV 128 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~ 128 (229)
+|+||||+|++||+++|+||||||||||+++|.
T Consensus 337 ~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 337 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred ccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 699999999999999999999999999998764
No 68
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.43 E-value=6.6e-14 Score=122.23 Aligned_cols=76 Identities=14% Similarity=0.184 Sum_probs=59.0
Q ss_pred ccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---------HHhhcCCCcccCc----
Q 027060 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---------AHARRGAPWTFNP---- 162 (229)
Q Consensus 97 l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---------~~~~~~~~~~~~~---- 162 (229)
+++++|++.+|++++|+||||||||||+++|+|+++ |++|. .+.|.+... ...+.++++.+|.
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~---~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK---NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH---HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH---HcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 357899999999999999999999999999999999 99996 788876321 1123456555553
Q ss_pred chhhhHHHHHHcc
Q 027060 163 LLLLNCLKNLRNQ 175 (229)
Q Consensus 163 ~~~~tv~e~l~~~ 175 (229)
.+..++.+++.++
T Consensus 167 ~~~~~v~e~l~~~ 179 (302)
T 3b9q_A 167 KAATVLSKAVKRG 179 (302)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 3447899999764
No 69
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=99.42 E-value=3.2e-15 Score=131.68 Aligned_cols=141 Identities=23% Similarity=0.316 Sum_probs=100.5
Q ss_pred eeEEcCccccccccccceeeeecCCc------EEEEEcCCCCcHHHHHHHHHHHhcccCCCCce----EecCCC--HHH-
Q 027060 83 MDEVYDALAQRLLPTSALASNVNVKH------IVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS----SFDSQD--PKE- 149 (229)
Q Consensus 83 ls~~y~~~~~~~~~l~~isl~i~~Ge------~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~----~~~g~~--~~~- 149 (229)
+++.|++.. .+++++..+..+. ++||+||||||||||+++|.+++.. .|++|. ..+|.. ...
T Consensus 66 l~~~~~~~~----~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~-~~~~~~v~~i~~D~f~~~~~~l 140 (321)
T 3tqc_A 66 LSFYVTARQ----TLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR-WPDHPNVEVITTDGFLYSNAKL 140 (321)
T ss_dssp HHHHHHHHH----HHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT-STTCCCEEEEEGGGGBCCHHHH
T ss_pred HHHhhcchH----HHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc-cCCCCeEEEEeecccccchhhh
Confidence 455566654 6778888887776 9999999999999999999999861 123442 233321 111
Q ss_pred ----HHhhcCCCcccCcchhhhHHHHHHccc-cccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecc------cCH
Q 027060 150 ----AHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG------GVW 218 (229)
Q Consensus 150 ----~~~~~~~~~~~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDE------P~~ 218 (229)
...+.|.+..++...+...++.+..+. .+..|.|++..+++..........++++|+|+++++.|+ +.|
T Consensus 141 ~~~~~~~~~g~P~~~D~~~l~~~L~~L~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~~~~~~~~~~ 220 (321)
T 3tqc_A 141 EKQGLMKRKGFPESYDMPSLLRVLNAIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQLQ 220 (321)
T ss_dssp HHTTCGGGTTSGGGBCHHHHHHHHHHHHTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCCCSSSSSCC
T ss_pred hhHHHHhhccCcccccHHHHHHHHHhhhccccccccchhhhhccccccCceeeccCCCEEEEEccccccccccccccchh
Confidence 123456677777777788899998887 677888999888876554455567899999999999988 234
Q ss_pred HHHHHHHhhh
Q 027060 219 KDVSSMFDEK 228 (229)
Q Consensus 219 ~~l~~~l~~~ 228 (229)
..+.+++|.+
T Consensus 221 ~~l~~~~D~~ 230 (321)
T 3tqc_A 221 VFVSDFFDFS 230 (321)
T ss_dssp CCGGGGCSEE
T ss_pred hhhhhhcCeE
Confidence 4455665554
No 70
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.40 E-value=1.3e-13 Score=116.21 Aligned_cols=37 Identities=22% Similarity=0.369 Sum_probs=26.8
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+|+++||++++|+++||+||||||||||+++|+|++.
T Consensus 14 ~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 14 GTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp ---------CCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 8999999999999999999999999999999999864
No 71
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.37 E-value=7.7e-15 Score=133.28 Aligned_cols=49 Identities=14% Similarity=0.184 Sum_probs=43.5
Q ss_pred cccceeeeecCCc--------------------EEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCH
Q 027060 96 PTSALASNVNVKH--------------------IVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDP 147 (229)
Q Consensus 96 ~l~~isl~i~~Ge--------------------~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~ 147 (229)
+|++|+|+|++|+ ++||+||||||||||+|+|+|+++ |++|. .++|.+.
T Consensus 38 ~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~---p~~GsI~~~g~~~ 107 (413)
T 1tq4_A 38 ILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN---EEEGAAKTGVVEV 107 (413)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT---TSTTSCCCCC---
T ss_pred HhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC---ccCceEEECCeec
Confidence 7899999999999 999999999999999999999999 99997 6666543
No 72
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.36 E-value=1.3e-14 Score=128.15 Aligned_cols=48 Identities=21% Similarity=0.356 Sum_probs=44.6
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCC
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQD 146 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~ 146 (229)
++++++|.+++|++++|+||||||||||+++|+|+++ |++|. .++|.+
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~---~~~g~i~i~~~~ 208 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP---KEERIISIEDTE 208 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC---TTSCEEEEESSC
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCcEEEECCee
Confidence 6889999999999999999999999999999999999 99997 777753
No 73
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.36 E-value=3.2e-13 Score=120.54 Aligned_cols=75 Identities=15% Similarity=0.186 Sum_probs=58.3
Q ss_pred cceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---------HHhhcCCCcccCc----c
Q 027060 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---------AHARRGAPWTFNP----L 163 (229)
Q Consensus 98 ~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---------~~~~~~~~~~~~~----~ 163 (229)
..++|++.+|++++|+||||||||||+++|+|+++ |++|. .+.|.+... ...+.++++.+|. .
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~---~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK---NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH---HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc---ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 46899999999999999999999999999999999 99896 788876421 1123456555543 3
Q ss_pred hhhhHHHHHHcc
Q 027060 164 LLLNCLKNLRNQ 175 (229)
Q Consensus 164 ~~~tv~e~l~~~ 175 (229)
+..++.+++.++
T Consensus 225 p~~tv~e~l~~~ 236 (359)
T 2og2_A 225 AATVLSKAVKRG 236 (359)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhhHHHHHHHH
Confidence 447899999764
No 74
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.33 E-value=1.6e-13 Score=125.45 Aligned_cols=141 Identities=14% Similarity=0.140 Sum_probs=92.0
Q ss_pred CeEEEeeeeEEcC-ccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCC---HHHH
Q 027060 76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQD---PKEA 150 (229)
Q Consensus 76 ~~i~~~~ls~~y~-~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~---~~~~ 150 (229)
++++++++++.|+ +.. +|+++ |+|.+|++++|+||||||||||+++|+|+.+ |+.|. .+.|++ +...
T Consensus 130 ~~l~~~~v~~~~~tg~~----vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~---~~~G~i~~~G~r~~ev~~~ 201 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVR----AINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR---ADVIVVGLIGERGREVKDF 201 (438)
T ss_dssp CTTTSCCCCSBCCCSCH----HHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC---CSEEEEEEESCCHHHHHHH
T ss_pred CceEEeccceecCCCce----EEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC---CCeEEEEEeceecHHHHHH
Confidence 4688999999997 333 89999 9999999999999999999999999999999 99997 788883 3321
Q ss_pred --------HhhcCCCcccCc----chhhhHHHHHHccccccCCCCCCC---CCCchhhhhhccCCccE--EEecCC-eee
Q 027060 151 --------HARRGAPWTFNP----LLLLNCLKNLRNQGSVYAPSFDHG---VGDPVEDDILVGLQHKV--VIVDGN-YLF 212 (229)
Q Consensus 151 --------~~~~~~~~~~~~----~~~~tv~e~l~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~rv--Li~d~~-~Ll 212 (229)
..+..+.+.+|. ...+++.+|+.+....+.. .... ..+. ...++.++ +|+ .+.+|+ .-.
T Consensus 202 ~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~-~~~~v~~~ld~-l~~lS~g~-qrvslAl~~p~~t~g 278 (438)
T 2dpy_A 202 IENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRD-RGQHVLLIMDS-LTRYAMAQ-REIALAIGEPPATKG 278 (438)
T ss_dssp HHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT-TTCEEEEEEEC-HHHHHHHH-HHHHHHTTCCCCSSS
T ss_pred HHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHh-HHHHHHHH-HHHHHHhCCCccccc
Confidence 122333344432 2337888888765432211 0000 0000 12233332 232 233444 677
Q ss_pred ecccCHHHHHHHHhh
Q 027060 213 LDGGVWKDVSSMFDE 227 (229)
Q Consensus 213 LDEP~~~~l~~~l~~ 227 (229)
||......+.+++..
T Consensus 279 lD~~~~~~l~~ll~r 293 (438)
T 2dpy_A 279 YPPSVFAKLPALVER 293 (438)
T ss_dssp CCTTHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888888877754
No 75
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.32 E-value=5.4e-13 Score=120.05 Aligned_cols=36 Identities=19% Similarity=0.298 Sum_probs=34.2
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
.+++++|++.+| +++|+|+||||||||+++|.+++.
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 688999999999 999999999999999999999875
No 76
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.31 E-value=4.5e-13 Score=119.09 Aligned_cols=65 Identities=14% Similarity=0.237 Sum_probs=57.7
Q ss_pred CeEEEeeeeEEcC-ccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH
Q 027060 76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK 148 (229)
Q Consensus 76 ~~i~~~~ls~~y~-~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~ 148 (229)
++++++++++.|+ +.. +++++ |+|.+|+++||+|+||||||||+++|+|+.. |+.|. .+.|++..
T Consensus 44 ~~i~~~~l~~~~~tg~~----ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~---~~~g~i~~~G~~~~ 110 (347)
T 2obl_A 44 DPLLRQVIDQPFILGVR----AIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS---ADIIVLALIGERGR 110 (347)
T ss_dssp CSTTCCCCCSEECCSCH----HHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC---CSEEEEEEESCCHH
T ss_pred CCeeecccceecCCCCE----EEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC---CCEEEEEEecccHH
Confidence 4688999999997 433 89999 9999999999999999999999999999999 99997 77787643
No 77
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.30 E-value=8.7e-14 Score=132.04 Aligned_cols=92 Identities=10% Similarity=0.073 Sum_probs=47.5
Q ss_pred eEEEeeeeEEcCccccccccccce----------eeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC-CCce-EecC
Q 027060 77 VVEARCMDEVYDALAQRLLPTSAL----------ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKAS-SFDS 144 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~i----------sl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p-~~G~-~~~g 144 (229)
.++++++++.|+....++ ++.+ +++++. +||+|+||||||||+++|+|++. | ++|. .++|
T Consensus 10 ~i~~~~l~~~~~~~~r~l--l~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~---P~~sG~vt~~g 81 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPC--IDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVAL---PRGSGIVTRCP 81 (608)
T ss_dssp ----------CHHHHHHH--HHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC----------CCCSC
T ss_pred hhhhhhhhHHHHHHHHHH--HHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCC---CCCCCeEEEcC
Confidence 588999999997643221 2222 355554 99999999999999999999987 8 7887 7777
Q ss_pred CCHH--------HHHhhcCC-CcccCcchhhhHHHHHHccc
Q 027060 145 QDPK--------EAHARRGA-PWTFNPLLLLNCLKNLRNQG 176 (229)
Q Consensus 145 ~~~~--------~~~~~~~~-~~~~~~~~~~tv~e~l~~~~ 176 (229)
.++. ..+..+++ ++.+.....+++.+|+.+..
T Consensus 82 ~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~ 122 (608)
T 3szr_A 82 LVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ 122 (608)
T ss_dssp EEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH
T ss_pred EEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHH
Confidence 6531 11122333 22233345588999987753
No 78
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.30 E-value=1.7e-12 Score=126.88 Aligned_cols=48 Identities=21% Similarity=0.313 Sum_probs=42.6
Q ss_pred CCeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHH-HHHHh
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAE-VVRRI 131 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~-L~gll 131 (229)
..+|+++++++ . .|+||||+|++|+++||+|+||||||||+++ |.|++
T Consensus 500 ~~~L~v~~l~~-----~----~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l 548 (842)
T 2vf7_A 500 AGWLELNGVTR-----N----NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDAL 548 (842)
T ss_dssp SCEEEEEEEEE-----T----TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHH
T ss_pred CceEEEEeeee-----c----ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHH
Confidence 45799999975 1 5889999999999999999999999999997 78776
No 79
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.29 E-value=3.9e-13 Score=125.30 Aligned_cols=66 Identities=9% Similarity=0.145 Sum_probs=54.3
Q ss_pred CCeEEEeeeeEEcCccccccccccceee-eecCCcEEEEEcCCCCcHHHHHHH--HHHHhcccCCCCce-EecCCCH
Q 027060 75 IPVVEARCMDEVYDALAQRLLPTSALAS-NVNVKHIVGLAGPPGAGKSTLAAE--VVRRINKIWPQKAS-SFDSQDP 147 (229)
Q Consensus 75 ~~~i~~~~ls~~y~~~~~~~~~l~~isl-~i~~Ge~v~IiGpNGsGKSTLlk~--L~gll~~~~p~~G~-~~~g~~~ 147 (229)
..+++.+++.+.+++.. +|++++| .|++|++++|+||||||||||+++ ++|+++ |++|. ++.|++.
T Consensus 10 ~~~~~~~~~~~~~~g~~----~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~---~~~g~i~v~g~~~ 79 (525)
T 1tf7_A 10 NNNSEHQAIAKMRTMIE----GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE---FDEPGVFVTFEET 79 (525)
T ss_dssp ----CCSSCCEECCCCT----THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH---HCCCEEEEESSSC
T ss_pred CCCccccccccccCCch----hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh---CCCCEEEEEEeCC
Confidence 34577777876665544 8999999 999999999999999999999999 789998 89997 8888764
No 80
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.28 E-value=1.1e-13 Score=119.08 Aligned_cols=67 Identities=16% Similarity=0.121 Sum_probs=36.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhcCCCcccCcch---hhhHHHHHHccccc
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARRGAPWTFNPLL---LLNCLKNLRNQGSV 178 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~~~~~~~~~~~---~~tv~e~l~~~~~~ 178 (229)
.++|+||||||||||+|+|+|+.. |++|. .++|.++.....+..+.+.+|... .+|+.|++.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~---~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~ 74 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV---SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQI 74 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC---CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhc
Confidence 489999999999999999999999 99997 777765422112223334444332 37888888776543
No 81
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.27 E-value=5.6e-13 Score=114.01 Aligned_cols=58 Identities=21% Similarity=0.202 Sum_probs=47.2
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCC-Cce-EecCCCH
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KAS-SFDSQDP 147 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~-~G~-~~~g~~~ 147 (229)
+++++++++. . +|++++ +.+|++++|+||||||||||+++|+|+++ |+ +|. .+.|.++
T Consensus 5 ~~~l~~l~~~----~----vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~---~~~~G~I~~~g~~i 64 (261)
T 2eyu_A 5 IPEFKKLGLP----D----KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN---QTKSYHIITIEDPI 64 (261)
T ss_dssp -CCGGGSSCC----T----HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH---HHCCCEEEEEESSC
T ss_pred CCChHHCCCH----H----HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC---CCCCCEEEEcCCcc
Confidence 3556677532 2 788998 89999999999999999999999999998 87 886 6666553
No 82
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.25 E-value=2.3e-13 Score=118.94 Aligned_cols=50 Identities=16% Similarity=0.319 Sum_probs=46.4
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.|+++||++.|+ .. +|+++||+|++|++++|+||||||||||+++|+|++
T Consensus 101 ~i~~~~vs~~y~-~~----vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 101 FFNYQNIELITF-IN----ALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHTTCCHHHH-HH----HHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEEEEEEcC-hh----hhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 488899999997 33 799999999999999999999999999999999987
No 83
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.23 E-value=7e-13 Score=110.44 Aligned_cols=60 Identities=18% Similarity=0.172 Sum_probs=42.9
Q ss_pred eEEEeeeeEEcCcccccccccccee-eeecCCcEEEEEcCCCCcHHHHHHHHH--HHhcccCCCCce-EecCCC
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALA-SNVNVKHIVGLAGPPGAGKSTLAAEVV--RRINKIWPQKAS-SFDSQD 146 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~is-l~i~~Ge~v~IiGpNGsGKSTLlk~L~--gll~~~~p~~G~-~~~g~~ 146 (229)
++++++++..|.. |+++- =.|++|++++|+||||||||||+++|+ |++. +..+. ++.+..
T Consensus 6 ~~~~~~i~tg~~~-------lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~---~~~~~~~~~~~~ 69 (251)
T 2ehv_A 6 YQPVRRVKSGIPG-------FDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEE---YGEPGVFVTLEE 69 (251)
T ss_dssp --CCCEECCSCTT-------TGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHH---HCCCEEEEESSS
T ss_pred ccccceeecCCHh-------HHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh---CCCeEEEEEccC
Confidence 4667777666654 33331 178999999999999999999999999 7745 55554 666654
No 84
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.23 E-value=1.1e-11 Score=122.01 Aligned_cols=44 Identities=27% Similarity=0.380 Sum_probs=39.1
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHH
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVV 128 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~ 128 (229)
+.|++++++. . .|+||||+|++|+++||+|+||||||||+++|+
T Consensus 628 ~~L~v~~l~~-----~----~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 628 RWLEVVGARE-----H----NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp CEEEEEEECS-----S----SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred eEEEEecCcc-----c----ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 5799999862 1 589999999999999999999999999999864
No 85
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.23 E-value=5.3e-12 Score=103.20 Aligned_cols=109 Identities=22% Similarity=0.261 Sum_probs=58.7
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCceE-----ec-CC--CHHHHHhhcCC--CcccCcchhhhHHHHHH
Q 027060 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-----FD-SQ--DPKEAHARRGA--PWTFNPLLLLNCLKNLR 173 (229)
Q Consensus 104 i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~~-----~~-g~--~~~~~~~~~~~--~~~~~~~~~~tv~e~l~ 173 (229)
.++|+++||+|+||||||||+++|+|++. |.-+.. +. .. .... .....+ +..++...+...++.+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~---~~i~~v~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~ 78 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG---ERVALLPMDHYYKDLGHLPLEE-RLRVNYDHPDAFDLALYLEHAQALL 78 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG---GGEEEEEGGGCBCCCTTSCHHH-HHHSCTTSGGGBCHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEecCccccCcccccHHH-hcCCCCCChhhhhHHHHHHHHHHHH
Confidence 56899999999999999999999999987 421211 11 01 1111 111111 11111112233444444
Q ss_pred ccccccCCCCCCCCCCchhhhhhccCCccEEEecCCeeeecccC
Q 027060 174 NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGV 217 (229)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~ 217 (229)
.......+.++...+++... ......+++++.||+++++|||.
T Consensus 79 ~~~~~~~~~~~~s~g~~~~~-~~~~~~~~~li~~~~ll~~de~~ 121 (211)
T 3asz_A 79 RGLPVEMPVYDFRAYTRSPR-RTPVRPAPVVILEGILVLYPKEL 121 (211)
T ss_dssp TTCCEEECCEETTTTEECSS-CEEECCCSEEEEESTTTTSSHHH
T ss_pred cCCCcCCCcccCcccCCCCC-eEEeCCCcEEEEeehhhccCHHH
Confidence 44433334444433333211 11223478999999999998863
No 86
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.22 E-value=1.8e-11 Score=120.94 Aligned_cols=44 Identities=18% Similarity=0.305 Sum_probs=39.1
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHH
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVV 128 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~ 128 (229)
++|++++++. . .|+||||+|++|+++||+|+||||||||+++|+
T Consensus 646 ~~L~v~~l~~-----~----~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 646 RQLTVVGARE-----H----NLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp SEEEEEEECS-----T----TCCSEEEEEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred ceEEEecCcc-----c----cccCceEEECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 5799999862 1 589999999999999999999999999999864
No 87
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.22 E-value=3.2e-12 Score=112.79 Aligned_cols=118 Identities=13% Similarity=0.064 Sum_probs=77.7
Q ss_pred eecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH---------HHHhhcCCCcccCc---chhhhHH
Q 027060 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK---------EAHARRGAPWTFNP---LLLLNCL 169 (229)
Q Consensus 103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~---------~~~~~~~~~~~~~~---~~~~tv~ 169 (229)
..++|++++|+||||||||||+++|+|++. |++|. .+.|.++. ....+.++++.++. .+..++.
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~---~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~ 201 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLK---NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAY 201 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHH
Confidence 447899999999999999999999999999 99996 77776531 12345676555543 3458899
Q ss_pred HHHHccccccCC--CCC----CCCCCchhhhhhccCCccEEEecCCeeeecccCHHHHHHHH
Q 027060 170 KNLRNQGSVYAP--SFD----HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 225 (229)
Q Consensus 170 e~l~~~~~~~~~--~~~----~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP~~~~l~~~l 225 (229)
+|+.++...... ..+ .........+++. ..+++..++++++||.+...++.+.+
T Consensus 202 e~l~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~--i~ral~~de~llvLDa~t~~~~~~~~ 261 (328)
T 3e70_C 202 DAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKK--IARVTKPNLVIFVGDALAGNAIVEQA 261 (328)
T ss_dssp HHHHHHHHHTCSEEEEEECCSCCTTTCHHHHHHH--HHHHHCCSEEEEEEEGGGTTHHHHHH
T ss_pred HHHHHHHhccchhhHHhhccchhHHHHHHHHHHH--HHHHhcCCCCEEEEecHHHHHHHHHH
Confidence 999765321110 001 1112233333332 35667789999999998765555543
No 88
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.21 E-value=8.2e-13 Score=115.07 Aligned_cols=53 Identities=17% Similarity=0.233 Sum_probs=22.4
Q ss_pred eeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHH-hcccCCCCceEecCCC
Q 027060 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR-INKIWPQKASSFDSQD 146 (229)
Q Consensus 81 ~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gl-l~~~~p~~G~~~~g~~ 146 (229)
.||++.|++.. ++++++|+| +|+|+||+|||||+++|.|. +. |++|..+.|.+
T Consensus 2 ~~l~~~~~~~~----~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~---~~~gi~~~g~~ 55 (301)
T 2qnr_A 2 SNLPNQVHRKS----VKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY---PERVISGAAEK 55 (301)
T ss_dssp --------------------CEEE------EEEEETTSSHHHHHHHHHC------------------
T ss_pred CCCcceECCEE----EEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc---CCCCcccCCcc
Confidence 57899998765 899999988 99999999999999999997 76 78885445544
No 89
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.21 E-value=1e-11 Score=114.60 Aligned_cols=48 Identities=27% Similarity=0.293 Sum_probs=45.1
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCH
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDP 147 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~ 147 (229)
+|+++||+|++ ++++|+||||||||||+++|+|+++ |++|. .++|+++
T Consensus 19 ~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~~ 67 (483)
T 3euj_A 19 GFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI---PDLTLLNFRNTTE 67 (483)
T ss_dssp TEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC---CCTTTCCCCCTTS
T ss_pred cccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC---CCCCEEEECCEEc
Confidence 78999999999 9999999999999999999999999 99997 8888764
No 90
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.21 E-value=1.7e-12 Score=129.44 Aligned_cols=52 Identities=19% Similarity=0.249 Sum_probs=41.7
Q ss_pred CeEEEee-----eeEEc-CccccccccccceeeeecC-------CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 76 PVVEARC-----MDEVY-DALAQRLLPTSALASNVNV-------KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 76 ~~i~~~~-----ls~~y-~~~~~~~~~l~~isl~i~~-------Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
++|++++ |++.| ++.. +++|++|++.+ |++++|+||||||||||||+| |++.
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~~~----v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~ 813 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGDDF----IPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA 813 (1022)
T ss_dssp CCEEEEEECCCC------CCCC----CCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred ceEEEEeccccEEEEEecCCce----EeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH
Confidence 4699999 99999 4433 89999999987 999999999999999999999 9886
No 91
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.18 E-value=1.3e-11 Score=114.16 Aligned_cols=77 Identities=16% Similarity=0.180 Sum_probs=59.4
Q ss_pred ccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHH---------HHhhcCCCcccCcc---
Q 027060 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKE---------AHARRGAPWTFNPL--- 163 (229)
Q Consensus 97 l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~---------~~~~~~~~~~~~~~--- 163 (229)
-+++||++.+|++++|+|+||||||||+++|+|++. +++|. .+.|.+... ...+.++++.++..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~---~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE---QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh---hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 358999999999999999999999999999999999 89896 666554311 11345666666543
Q ss_pred hhhhHHHHHHccc
Q 027060 164 LLLNCLKNLRNQG 176 (229)
Q Consensus 164 ~~~tv~e~l~~~~ 176 (229)
...++.+++.++.
T Consensus 360 p~~tV~e~l~~a~ 372 (503)
T 2yhs_A 360 SASVIFDAIQAAK 372 (503)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4578999998753
No 92
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.16 E-value=5.5e-13 Score=118.01 Aligned_cols=65 Identities=23% Similarity=0.274 Sum_probs=57.7
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCH
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDP 147 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~ 147 (229)
.+|+++++++.|+... ++++++|++.+|++++|+|+||||||||+++|+|++. |++|. .+.+.++
T Consensus 28 ~~ie~~~~~~~~~~~~----~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~---~~~g~v~i~~~d~ 93 (337)
T 2qm8_A 28 TLAESRRADHRAAVRD----LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT---AAGHKVAVLAVDP 93 (337)
T ss_dssp HHHTCSSHHHHHHHHH----HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH---HTTCCEEEEEECG
T ss_pred HHHeeCCcccccChHH----HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh---hCCCEEEEEEEcC
Confidence 3588899999997654 7899999999999999999999999999999999999 98886 6777655
No 93
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.15 E-value=1.2e-11 Score=102.67 Aligned_cols=36 Identities=22% Similarity=0.345 Sum_probs=25.3
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.|+||||+|++|++++|+||||||||||+++|+|++
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 588999999999999999999999999999999976
No 94
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.14 E-value=5.6e-12 Score=105.09 Aligned_cols=62 Identities=19% Similarity=0.288 Sum_probs=40.8
Q ss_pred ceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCC--CCce-EecCCCHHHHHhhcCCCcccCcch
Q 027060 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKAS-SFDSQDPKEAHARRGAPWTFNPLL 164 (229)
Q Consensus 99 ~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p--~~G~-~~~g~~~~~~~~~~~~~~~~~~~~ 164 (229)
+-.-..++|++++|+||||||||||+++|+|+++ | ..|. .+.+.++.. ..+.++.+.|+...
T Consensus 8 ~~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~---p~~~~g~v~~ttr~~~~-~e~~gi~y~fq~~~ 72 (219)
T 1s96_A 8 HHHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQP---LYDTQVSVSHTTRQPRP-GEVHGEHYFFVNHD 72 (219)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHHHHSC---TTTEEECCCEECSCCCT-TCCBTTTBEECCHH
T ss_pred cccccCCCCcEEEEECCCCCCHHHHHHHHhccCC---CCceEEEEEecCCCCCc-ccccCceEEECCHH
Confidence 4455688999999999999999999999999987 6 4564 555654322 12345666676653
No 95
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.14 E-value=3.9e-11 Score=104.77 Aligned_cols=67 Identities=19% Similarity=0.150 Sum_probs=51.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHH------H---HHhhcCCCcccCcc---hhhhHHHHH
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPK------E---AHARRGAPWTFNPL---LLLNCLKNL 172 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~------~---~~~~~~~~~~~~~~---~~~tv~e~l 172 (229)
+|++++|+||||||||||+++|+|++. |++|. .+.|.++. . ...+.++++.+|.. +..++.+++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~---~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ---NLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH---TTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH---hcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 699999999999999999999999999 99996 78777631 1 11244566666543 447888888
Q ss_pred Hcc
Q 027060 173 RNQ 175 (229)
Q Consensus 173 ~~~ 175 (229)
.+.
T Consensus 178 ~~~ 180 (304)
T 1rj9_A 178 QAM 180 (304)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 96
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.12 E-value=2.1e-12 Score=117.48 Aligned_cols=51 Identities=16% Similarity=0.057 Sum_probs=40.2
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G 139 (229)
.+|+++||++.|++.. ++++++|+| +|+|+||||||||+++|+|... +..|
T Consensus 10 ~~l~~~~l~~~y~~~~----vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~---~~~~ 60 (418)
T 2qag_C 10 GYVGFANLPNQVYRKS----VKRGFEFTL------MVVGESGLGKSTLINSLFLTDL---YSPE 60 (418)
T ss_dssp -----CCCCCCTTTTT----CC-CCCEEE------EEECCTTSSHHHHHHHHTTCCC---CCCC
T ss_pred CcEEEEecceeECCEE----EecCCCEEE------EEECCCCCcHHHHHHHHhCCCC---CCCC
Confidence 4699999999998765 899999998 9999999999999999999876 5444
No 97
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.11 E-value=8.2e-12 Score=111.32 Aligned_cols=55 Identities=22% Similarity=0.186 Sum_probs=41.2
Q ss_pred eeeEEcCccccccccccceee-------eecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCC-CceE
Q 027060 82 CMDEVYDALAQRLLPTSALAS-------NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KASS 141 (229)
Q Consensus 82 ~ls~~y~~~~~~~~~l~~isl-------~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~-~G~~ 141 (229)
.++.+|-.. ....|+++.+ .+.+|++++|+||||||||||+++|+|+++ ++ +|..
T Consensus 93 ~~~iR~~~~--~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~---~~~~~~i 155 (356)
T 3jvv_A 93 GAVFRTIPS--KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLN---NTKYHHI 155 (356)
T ss_dssp EEEEEEECC--SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHH---HHCCCEE
T ss_pred EEEEEECCC--CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhccc---CCCCcEE
Confidence 444454332 2235667665 678899999999999999999999999998 87 4543
No 98
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=99.09 E-value=1.2e-11 Score=109.92 Aligned_cols=76 Identities=32% Similarity=0.627 Sum_probs=61.7
Q ss_pred HhhcCCCcccCcchhhhHHHHHHcc-----------------------------ccccCCCCCCCCCCchhhhhhccCCc
Q 027060 151 HARRGAPWTFNPLLLLNCLKNLRNQ-----------------------------GSVYAPSFDHGVGDPVEDDILVGLQH 201 (229)
Q Consensus 151 ~~~~~~~~~~~~~~~~tv~e~l~~~-----------------------------~~~~~~~~~~~~~~~~~~~l~~~~~~ 201 (229)
..++|.|..|+...+...++.|..+ ..+..|.|++..+++......+....
T Consensus 181 ~~rrG~P~tfD~~~l~~~l~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~P~yD~~~~d~~~~~~~v~~~~ 260 (359)
T 2ga8_A 181 HKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFT 260 (359)
T ss_dssp HTTTTSGGGBCHHHHHHHHHHHHHHHTSCCC-------CCCHHHHHHTCEETTCCCEEEEEEETTTTEEEEEEEEECTTC
T ss_pred hccCCCCccccHHHHHHHHHHHHcCCcccccccccccccccccccccccccccCceEeeccccCccCCCCCCceEecCCC
Confidence 4567788888888777777777665 34567889988888887777777778
Q ss_pred cEEEecCCeeeecccCHHHHHHHHh
Q 027060 202 KVVIVDGNYLFLDGGVWKDVSSMFD 226 (229)
Q Consensus 202 rvLi~d~~~LlLDEP~~~~l~~~l~ 226 (229)
+++|+|+.+++++++.|..+++++|
T Consensus 261 ~iVIvEGi~LL~e~~~w~~l~~l~D 285 (359)
T 2ga8_A 261 RIVILEGLYLLYDQENWKKIYKTLA 285 (359)
T ss_dssp CEEEEEESSTTBCSHHHHHHHHHHH
T ss_pred CEEEEEeehhhccccchhhhhhccc
Confidence 9999999999999888999999998
No 99
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.08 E-value=6.3e-12 Score=112.13 Aligned_cols=64 Identities=22% Similarity=0.335 Sum_probs=51.8
Q ss_pred EEeeeeEE---cCccccccc-------cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCC
Q 027060 79 EARCMDEV---YDALAQRLL-------PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ 145 (229)
Q Consensus 79 ~~~~ls~~---y~~~~~~~~-------~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~ 145 (229)
+++++++. |++....++ ++++++|.|++|++++|+||||||||||+++|+|+++ |++|. .++|.
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~---~~~g~I~ie~~ 211 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP---FDQRLITIEDV 211 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC---TTSCEEEEESS
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC---CCceEEEECCc
Confidence 45677777 754211222 3489999999999999999999999999999999999 99997 77764
No 100
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.08 E-value=1.2e-11 Score=101.72 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=28.4
Q ss_pred eecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
-|++|++++|+||||||||||+++|+|++.
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 688999999999999999999999999776
No 101
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.06 E-value=3.3e-12 Score=103.11 Aligned_cols=24 Identities=38% Similarity=0.747 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+++|+||||||||||+++|+|++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999999985
No 102
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.05 E-value=3.3e-11 Score=116.97 Aligned_cols=70 Identities=20% Similarity=0.162 Sum_probs=43.6
Q ss_pred ccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCceEecCCCHHHHHhhcCCCcccCcchhhhHHHHHHc
Q 027060 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQDPKEAHARRGAPWTFNPLLLLNCLKNLRN 174 (229)
Q Consensus 95 ~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~ 174 (229)
.+++|++|+ |++++|+||||||||||||+|+|+... ++.|..+... ... ++..++.+..+++.+|+..
T Consensus 567 ~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~--~~~G~~vpa~-----~~~--i~~v~~i~~~~~~~d~l~~ 634 (765)
T 1ewq_A 567 FVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALL--AQVGSFVPAE-----EAH--LPLFDGIYTRIGASDDLAG 634 (765)
T ss_dssp CCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHH--HTTTCCBSSS-----EEE--ECCCSEEEEECCC------
T ss_pred eEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhh--cccCceeehh-----ccc--eeeHHHhhccCCHHHHHHh
Confidence 378899998 999999999999999999999998630 4666533211 112 2333344444677787765
Q ss_pred cc
Q 027060 175 QG 176 (229)
Q Consensus 175 ~~ 176 (229)
+.
T Consensus 635 g~ 636 (765)
T 1ewq_A 635 GK 636 (765)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 103
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.04 E-value=1e-10 Score=115.30 Aligned_cols=29 Identities=24% Similarity=0.417 Sum_probs=28.1
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHH
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLA 124 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLl 124 (229)
.|+||||+|++|++++|+|+||||||||+
T Consensus 599 ~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 599 NLKNIDVEIPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred cccccceEEcCCcEEEEEccCCCChhhhH
Confidence 68999999999999999999999999997
No 104
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.03 E-value=2.4e-11 Score=98.58 Aligned_cols=54 Identities=17% Similarity=0.119 Sum_probs=35.3
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHh-----cccCCCCce
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI-----NKIWPQKAS 140 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll-----~~~~p~~G~ 140 (229)
+|+++|+++.|+. . ++++ |.+.+|++++|+|+||||||||++.|+|.. . |+.|.
T Consensus 3 ~l~~~~~~~~~~~-~----~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~---~~~G~ 61 (210)
T 1pui_A 3 NLNYQQTHFVMSA-P----DIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTS---KTPGR 61 (210)
T ss_dssp --------CEEEE-S----SGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC---------------
T ss_pred chhhhhhhheeec-C----CHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCcccccc---CCCcc
Confidence 5899999999973 2 6767 899999999999999999999999999977 5 66664
No 105
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.01 E-value=4.4e-10 Score=96.67 Aligned_cols=41 Identities=12% Similarity=0.124 Sum_probs=39.3
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G 139 (229)
+|+++++.+.+|++++|+|+||||||||++.|+|.+. +.+|
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~---~~~G 64 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG---TAMG 64 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH---HTSC
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH---HHcC
Confidence 7899999999999999999999999999999999998 8877
No 106
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.99 E-value=1.3e-10 Score=96.49 Aligned_cols=37 Identities=27% Similarity=0.399 Sum_probs=22.9
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHHHHHH-HHhc
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVV-RRIN 132 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~-gll~ 132 (229)
..+++||++++|++++|+||||||||||+++|+ |+++
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 467999999999999999999999999999999 9983
No 107
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.98 E-value=4.5e-10 Score=98.30 Aligned_cols=32 Identities=19% Similarity=0.386 Sum_probs=28.8
Q ss_pred ceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 99 ~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll 131 (229)
++++++.+| +++|+|+||||||||+++|..++
T Consensus 17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp CEEEECCSS-EEEEECCTTTCSTHHHHHHHHTS
T ss_pred CeEEecCCC-cEEEECCCCCcHHHHHHHHHHHh
Confidence 567888888 99999999999999999999765
No 108
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.98 E-value=6e-11 Score=100.84 Aligned_cols=53 Identities=19% Similarity=0.289 Sum_probs=36.2
Q ss_pred CeEEEeee-eEEc-CccccccccccceeeeecC---CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 76 PVVEARCM-DEVY-DALAQRLLPTSALASNVNV---KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 76 ~~i~~~~l-s~~y-~~~~~~~~~l~~isl~i~~---Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
++|+++|+ ++.| ++.. +|+++||+|.+ |++++|+|++||||||+.++|++.+.
T Consensus 16 ~~l~~~~~~~~~~~~~~~----~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQ----ILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp ----------------CH----HHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CceEEcceeeEEecCcch----hhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 47999999 9999 5443 89999999999 99999999999999999999999775
No 109
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.96 E-value=8.1e-11 Score=96.46 Aligned_cols=46 Identities=15% Similarity=0.308 Sum_probs=39.4
Q ss_pred cccceee-eecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecC
Q 027060 96 PTSALAS-NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS 144 (229)
Q Consensus 96 ~l~~isl-~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g 144 (229)
.|+++.. .+++|++++|+||||||||||++.|++... +.+|. .+.+
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~---~~~~~v~~~~ 58 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL---RDGDPCIYVT 58 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH---HHTCCEEEEE
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH---HCCCeEEEEE
Confidence 6788887 899999999999999999999999999887 66664 4444
No 110
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.92 E-value=1.7e-10 Score=103.24 Aligned_cols=45 Identities=24% Similarity=0.280 Sum_probs=36.9
Q ss_pred ccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCC-Cce-EecCCC
Q 027060 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KAS-SFDSQD 146 (229)
Q Consensus 97 l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~-~G~-~~~g~~ 146 (229)
|++++ +.+|++++|+||||||||||+++|+|+++ |+ +|. .+.+.+
T Consensus 128 l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~---~~~~g~I~~~e~~ 174 (372)
T 2ewv_A 128 VLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN---QTKSYHIITIEDP 174 (372)
T ss_dssp HHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH---HHSCCEEEEEESS
T ss_pred HHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC---cCCCcEEEEeccc
Confidence 44443 78999999999999999999999999998 87 786 454443
No 111
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.92 E-value=6e-10 Score=90.12 Aligned_cols=32 Identities=25% Similarity=0.543 Sum_probs=26.6
Q ss_pred eeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 101 sl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
|+++.+|++++|+||||||||||+++|+|+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 56788999999999999999999999999863
No 112
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.91 E-value=1.2e-10 Score=105.96 Aligned_cols=49 Identities=24% Similarity=0.308 Sum_probs=39.9
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcE--EEEEcCCCCcHHHHHHHHHHHh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHI--VGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~--v~IiGpNGsGKSTLlk~L~gll 131 (229)
.+++.+ ++.|++. .|+++||+|.+|++ ++|+|+||||||||+++|+|+.
T Consensus 16 ~l~~~~-~~~y~~~-----~L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 16 TVPLAG-HVGFDSL-----PDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp -CCCCC-CC-CC-------CHHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred eEEEee-EEEECCe-----ecCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 466777 8899763 28899999999999 9999999999999999999974
No 113
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.91 E-value=3.6e-10 Score=110.21 Aligned_cols=36 Identities=19% Similarity=0.212 Sum_probs=33.9
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+++|++|+ ++|++++|+||||||||||||+|+|+..
T Consensus 597 vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~ 632 (800)
T 1wb9_A 597 IANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIAL 632 (800)
T ss_dssp CCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHH
Confidence 78999999 9999999999999999999999999853
No 114
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.87 E-value=2.5e-10 Score=106.26 Aligned_cols=132 Identities=13% Similarity=0.061 Sum_probs=79.7
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc--eEecCCCHH-HHHhh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA--SSFDSQDPK-EAHAR 153 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G--~~~~g~~~~-~~~~~ 153 (229)
.+++++++..|++.. . +| +..|.+|++++|+|+||||||||+++++|+.. +.++ .++.+++.. ....+
T Consensus 257 ~~~~~~l~~g~~~ld-~--vL---~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~---~~G~~vi~~~~ee~~~~l~~~ 327 (525)
T 1tf7_A 257 RSSNVRVSSGVVRLD-E--MC---GGGFFKDSIILATGATGTGKTLLVSRFVENAC---ANKERAILFAYEESRAQLLRN 327 (525)
T ss_dssp CCCCCEECCSCHHHH-H--HT---TSSEESSCEEEEEECTTSSHHHHHHHHHHHHH---TTTCCEEEEESSSCHHHHHHH
T ss_pred ccccceeecChHHHH-H--Hh---CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---hCCCCEEEEEEeCCHHHHHHH
Confidence 356666665554311 0 22 45899999999999999999999999999998 7643 245555432 21111
Q ss_pred -cCCCcccCcchhhhHHHHHHccccc----cCCCCCCCCCCchhhhhhccCCccEEEecCCeeeeccc-----CHHHHHH
Q 027060 154 -RGAPWTFNPLLLLNCLKNLRNQGSV----YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG-----VWKDVSS 223 (229)
Q Consensus 154 -~~~~~~~~~~~~~tv~e~l~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~rvLi~d~~~LlLDEP-----~~~~l~~ 223 (229)
..+.. .+.+....+... ....++.+..++...+.....++++|++| ++-.||.. .+..+.+
T Consensus 328 ~~~~g~--------~~~~~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ 398 (525)
T 1tf7_A 328 AYSWGM--------DFEEMERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIG 398 (525)
T ss_dssp HHTTSC--------CHHHHHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHH
T ss_pred HHHcCC--------CHHHHHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHH
Confidence 11111 112212221111 11123445556666666667788899999 88888887 6767666
Q ss_pred HHh
Q 027060 224 MFD 226 (229)
Q Consensus 224 ~l~ 226 (229)
++.
T Consensus 399 ll~ 401 (525)
T 1tf7_A 399 VTG 401 (525)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 115
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.85 E-value=2.3e-10 Score=104.06 Aligned_cols=61 Identities=16% Similarity=0.177 Sum_probs=48.2
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCC
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQD 146 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~ 146 (229)
.++++++.+.|+... +|+++ + ..+|++++|+|||||||||||++|+|+++ |.+|. .+.+.+
T Consensus 143 ~~~l~~Lg~~~~~~~----~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~---~~~g~I~~~ed~ 204 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHD----NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELN---SSERNILTVEDP 204 (418)
T ss_dssp CCCGGGSCCCHHHHH----HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHC---CTTSCEEEEESS
T ss_pred CCCHHHcCCCHHHHH----HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcC---CCCCEEEEeccc
Confidence 456677776665443 67777 5 37899999999999999999999999999 88885 555544
No 116
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.83 E-value=2.3e-09 Score=85.82 Aligned_cols=67 Identities=25% Similarity=0.286 Sum_probs=44.5
Q ss_pred eecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhh-cCCCcccCcc-hhhhHHHHHHc
Q 027060 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHAR-RGAPWTFNPL-LLLNCLKNLRN 174 (229)
Q Consensus 103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~-~~~~~~~~~~-~~~tv~e~l~~ 174 (229)
.+++|++++|+|+||||||||+++|++. +..|. .++|.++...... ..+.+.++.. ...++.+++.+
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~-----~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~ 74 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL-----PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAAD 74 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC-----SSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc-----cCCCeEEEcccchhhhhhcccccCCccchhhhhHHHHHHHHH
Confidence 4779999999999999999999999995 35675 7777654322111 1123333322 23677777754
No 117
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.83 E-value=1.4e-10 Score=97.27 Aligned_cols=56 Identities=21% Similarity=0.298 Sum_probs=40.8
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCH
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDP 147 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~ 147 (229)
.|+++|+...|+. ++++.+ ++++|+||||||||||+++|+|++. |++|. .++|.++
T Consensus 9 ~l~l~~~~~~~~~-----------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~---~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 9 SLTLINWNGFFAR-----------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI---PDLTLLHFRNTTE 65 (227)
T ss_dssp EEEEEEETTEEEE-----------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS---CCTTTC-------
T ss_pred EEEEEeeecccCC-----------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc---cCCCeEEECCEEc
Confidence 5888888765532 345555 8999999999999999999999999 99996 7777664
No 118
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.83 E-value=2.7e-10 Score=112.39 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=34.4
Q ss_pred ccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 95 ~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.+++|++|++.+|++++|+||||||||||||+|+++.
T Consensus 661 ~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~ 697 (918)
T 3thx_B 661 YVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALIT 697 (918)
T ss_dssp SCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHH
T ss_pred eecccccccCCCCeEEEEECCCCCchHHHHHHHHHHH
Confidence 3789999999999999999999999999999998764
No 119
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.83 E-value=3.8e-10 Score=97.84 Aligned_cols=109 Identities=22% Similarity=0.333 Sum_probs=68.0
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCC-----ceE--ecCC--CHH--HH----------HhhcCCCcccCc
Q 027060 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-----ASS--FDSQ--DPK--EA----------HARRGAPWTFNP 162 (229)
Q Consensus 104 i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~-----G~~--~~g~--~~~--~~----------~~~~~~~~~~~~ 162 (229)
-.++.++||+|++|||||||++.|.+++. +.. +.. .++. +.. .. ....+.+..++.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~---~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~ 104 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM---EKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDM 104 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHH---HHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhh---hcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHH
Confidence 34788999999999999999999999997 531 112 2221 111 11 011234555555
Q ss_pred chhhhHHHHHHcc------ccccCCCCCCCC----CCchhhh--hhccCCccEEEecCCeeeecccC
Q 027060 163 LLLLNCLKNLRNQ------GSVYAPSFDHGV----GDPVEDD--ILVGLQHKVVIVDGNYLFLDGGV 217 (229)
Q Consensus 163 ~~~~tv~e~l~~~------~~~~~~~~~~~~----~~~~~~~--l~~~~~~rvLi~d~~~LlLDEP~ 217 (229)
..+...++.+..+ .....+.|+... +++...+ ..+ .++|||+|+.++++|+..
T Consensus 105 ~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 105 KLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp HHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred HHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 5556666666655 234445565444 6765543 333 789999999999999753
No 120
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.82 E-value=4.4e-09 Score=89.80 Aligned_cols=30 Identities=37% Similarity=0.517 Sum_probs=27.8
Q ss_pred eecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
.+.+|++++|+||||||||||++.|++.+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 477999999999999999999999999776
No 121
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.80 E-value=7.7e-09 Score=82.25 Aligned_cols=39 Identities=15% Similarity=0.284 Sum_probs=34.9
Q ss_pred cceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce
Q 027060 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (229)
Q Consensus 98 ~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~ 140 (229)
+++++++.+| +++|+|+||||||||+++|.+++. +..|.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~---~~~~~ 56 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG---GLSAK 56 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT---CCCTG
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc---CCccc
Confidence 5888999998 999999999999999999999987 66554
No 122
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.79 E-value=8.2e-11 Score=103.44 Aligned_cols=143 Identities=18% Similarity=0.147 Sum_probs=81.9
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCC-------cEEEEEcCCCCcHHHHHHHHHHHhccc-CCCCce-EecCCCH
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVK-------HIVGLAGPPGAGKSTLAAEVVRRINKI-WPQKAS-SFDSQDP 147 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~G-------e~v~IiGpNGsGKSTLlk~L~gll~~~-~p~~G~-~~~g~~~ 147 (229)
.++.++++..|+... +++++++.|.+| +.++|+||||+|||||+++|++.+... .+.+|. ...+.++
T Consensus 18 ~lr~~~l~~~~g~~~----~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l 93 (334)
T 1in4_A 18 FLRPKSLDEFIGQEN----VKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDM 93 (334)
T ss_dssp TTSCSSGGGCCSCHH----HHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHH
T ss_pred HcCCccHHHccCcHH----HHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHH
Confidence 356678888887654 788999999876 899999999999999999999998200 055564 3333333
Q ss_pred HHHHh---hcCCCcccCcchh-hhHHHHHHccccccCCC------------------CCCCCCCchhhhhhccCCccEEE
Q 027060 148 KEAHA---RRGAPWTFNPLLL-LNCLKNLRNQGSVYAPS------------------FDHGVGDPVEDDILVGLQHKVVI 205 (229)
Q Consensus 148 ~~~~~---~~~~~~~~~~~~~-~tv~e~l~~~~~~~~~~------------------~~~~~~~~~~~~l~~~~~~rvLi 205 (229)
..... ...+.+.++...+ .++.+++......+... +...........++.+...|+-+
T Consensus 94 ~~~~~~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l 173 (334)
T 1in4_A 94 AAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGI 173 (334)
T ss_dssp HHHHHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSE
T ss_pred HHHHHHccCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCc
Confidence 22211 2234444444333 24566553221111000 00000011112344445556522
Q ss_pred ecCCeeeecccCHHHHHHHHhh
Q 027060 206 VDGNYLFLDGGVWKDVSSMFDE 227 (229)
Q Consensus 206 ~d~~~LlLDEP~~~~l~~~l~~ 227 (229)
..-||.++..++.+++..
T Consensus 174 ----~~~Ld~~~~~~l~~iL~~ 191 (334)
T 1in4_A 174 ----ILELDFYTVKELKEIIKR 191 (334)
T ss_dssp ----EEECCCCCHHHHHHHHHH
T ss_pred ----eeeCCCCCHHHHHHHHHH
Confidence 277899998888888764
No 123
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.79 E-value=1.2e-09 Score=108.07 Aligned_cols=35 Identities=17% Similarity=0.140 Sum_probs=32.5
Q ss_pred ccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHH
Q 027060 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (229)
Q Consensus 95 ~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~g 129 (229)
.+++|++|++.+|++++|+||||||||||||+|++
T Consensus 650 ~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 650 FIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHH
T ss_pred eecccceeecCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 47889999999999999999999999999999944
No 124
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.76 E-value=4.9e-10 Score=99.42 Aligned_cols=48 Identities=23% Similarity=0.418 Sum_probs=39.5
Q ss_pred cccce-eeeecCCcEEEEEcCCCCcHHHHHHHHHHHh--cccCCCC----ce--EecCCC
Q 027060 96 PTSAL-ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQK----AS--SFDSQD 146 (229)
Q Consensus 96 ~l~~i-sl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll--~~~~p~~----G~--~~~g~~ 146 (229)
.|+.+ .+.|++|++++|+||||||||||++.|++.. + |+. |. ++++++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~---~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLP---PEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSC---GGGTSCSCEEEEEESSS
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccc---hhcCCCCCeEEEEeCCC
Confidence 45555 6899999999999999999999999999998 4 555 43 677765
No 125
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.74 E-value=2.7e-09 Score=94.77 Aligned_cols=39 Identities=18% Similarity=0.253 Sum_probs=37.0
Q ss_pred ccceeeeecC--CcEEEEEcCCCCcHHHHHHHHHHHhcccCCCC
Q 027060 97 TSALASNVNV--KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK 138 (229)
Q Consensus 97 l~~isl~i~~--Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~ 138 (229)
.+.|++.|.+ |++++|+|+||||||||+++|+|+++ |++
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~---~~~ 198 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN---TTS 198 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT---CEE
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC---CCc
Confidence 5679999999 99999999999999999999999999 888
No 126
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.74 E-value=7.3e-09 Score=80.96 Aligned_cols=32 Identities=25% Similarity=0.179 Sum_probs=29.1
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+++++ +|+.++|+||||+|||||+++|++.+.
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45555 899999999999999999999999998
No 127
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.74 E-value=2.2e-09 Score=85.54 Aligned_cols=36 Identities=28% Similarity=0.424 Sum_probs=32.5
Q ss_pred eeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc
Q 027060 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (229)
Q Consensus 101 sl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G 139 (229)
+|.+.+|+.++|+||||+|||||+++|++.+. +..|
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~---~~~g 67 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY---EKKG 67 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH---HHSC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHH---HHcC
Confidence 56778899999999999999999999999997 6666
No 128
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.73 E-value=1.6e-09 Score=100.84 Aligned_cols=47 Identities=19% Similarity=0.210 Sum_probs=43.2
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCC
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ 145 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~ 145 (229)
+++++++.+.+|+.++|+||||||||||+++|+|+++ |+.|. .+.|.
T Consensus 249 ~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~---~~~giitied~ 296 (511)
T 2oap_1 249 VLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP---PDAKVVSIEDT 296 (511)
T ss_dssp HHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC---TTCCEEEEESS
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC---CCCCEEEEcCc
Confidence 5778999999999999999999999999999999999 99997 77665
No 129
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.67 E-value=1.1e-08 Score=82.62 Aligned_cols=35 Identities=20% Similarity=0.355 Sum_probs=29.2
Q ss_pred eeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc
Q 027060 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (229)
Q Consensus 102 l~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G 139 (229)
++|.+|++++|+||||||||||+++|++++. |+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~---~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPS---TSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTT---CCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhC---CCeE
Confidence 4678999999999999999999999999986 6544
No 130
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.66 E-value=5.9e-09 Score=84.64 Aligned_cols=48 Identities=17% Similarity=0.117 Sum_probs=36.5
Q ss_pred eeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 81 ~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+|++..++... +.+..++...+|++++|+|+||||||||+++|++.+.
T Consensus 3 ~~~~~~~~~~~----~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 3 TNIKWHECSVE----KVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp -------CCCC----HHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCcccccccC----HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45666665544 6678888899999999999999999999999999985
No 131
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.66 E-value=1e-08 Score=83.52 Aligned_cols=28 Identities=39% Similarity=0.515 Sum_probs=24.0
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
++|++++|+||||||||||+++|+|+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5799999999999999999999999874
No 132
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.64 E-value=8.6e-09 Score=82.58 Aligned_cols=62 Identities=24% Similarity=0.245 Sum_probs=38.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCHHHHHhhcCC-CcccCcchhhhHHHHHHcc
Q 027060 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ 175 (229)
Q Consensus 107 Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~~~~~~~~~~-~~~~~~~~~~tv~e~l~~~ 175 (229)
|++++|+||||||||||+++|++ +.+|. .++|.++... ...+. +.........++.+++.+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~------~~~g~~~i~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~ 65 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA------QLDNSAYIEGDIINHM-VVGGYRPPWESDELLALTWKNITDL 65 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH------HSSSEEEEEHHHHHTT-CCTTCCCGGGCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc------ccCCeEEEcccchhhh-hccccccCccchhHHHHHHHHHHHH
Confidence 68999999999999999999987 35674 7766443221 11222 2211112235677776543
No 133
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.64 E-value=9.3e-09 Score=82.62 Aligned_cols=26 Identities=31% Similarity=0.537 Sum_probs=24.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 107 Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
|++++|+||||||||||+++|+|+++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999999986
No 134
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.60 E-value=8.5e-09 Score=89.47 Aligned_cols=43 Identities=21% Similarity=0.242 Sum_probs=31.5
Q ss_pred eeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-Ee---cCCCH
Q 027060 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SF---DSQDP 147 (229)
Q Consensus 102 l~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~---~g~~~ 147 (229)
|++..|++++|+||||||||||+++|+|++. |++|. .+ +|+++
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~---~~~G~i~~~~~~g~~~ 210 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLK---LRVSEVSEKLQRGRHT 210 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCC---CC-------------C
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccc---ccccceecccCCCCCc
Confidence 5667899999999999999999999999999 99997 66 66543
No 135
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.59 E-value=2.7e-08 Score=80.65 Aligned_cols=37 Identities=35% Similarity=0.382 Sum_probs=25.8
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
.++|+||++.+|++++|+|++||||||+.+.|++.+.
T Consensus 14 ~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 14 GTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 7899999999999999999999999999999998775
No 136
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.57 E-value=7.3e-08 Score=78.29 Aligned_cols=45 Identities=22% Similarity=0.245 Sum_probs=36.2
Q ss_pred cccceee-eecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCC
Q 027060 96 PTSALAS-NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ 145 (229)
Q Consensus 96 ~l~~isl-~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~ 145 (229)
.|+++.. .+++|++++|+|+||||||||++.|++ . +..+. ++...
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~---~~~~v~~i~~~ 54 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L---SGKKVAYVDTE 54 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H---HCSEEEEEESS
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H---cCCcEEEEECC
Confidence 5666665 689999999999999999999999999 4 44555 55544
No 137
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.56 E-value=2.6e-08 Score=80.98 Aligned_cols=26 Identities=38% Similarity=0.613 Sum_probs=24.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 107 Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
|++++|+||||||||||+++|+|+++
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc
Confidence 78999999999999999999999985
No 138
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.56 E-value=5.5e-08 Score=86.65 Aligned_cols=34 Identities=24% Similarity=0.282 Sum_probs=31.8
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHH
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.++++++++.+| +++|+||||||||||+++|.++
T Consensus 16 ~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~~ 49 (359)
T 2o5v_A 16 NLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYLA 49 (359)
T ss_dssp TCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHHH
T ss_pred ceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHHh
Confidence 577999999999 9999999999999999999983
No 139
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.50 E-value=3.2e-08 Score=84.71 Aligned_cols=44 Identities=34% Similarity=0.394 Sum_probs=38.6
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCC
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQD 146 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~ 146 (229)
+++++++.+++| ++|+||||||||||+++|+|.+. + +. .+.|.+
T Consensus 35 ~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~---~--~~i~i~g~~ 79 (274)
T 2x8a_A 35 QFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG---L--NFISVKGPE 79 (274)
T ss_dssp HHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT---C--EEEEEETTT
T ss_pred HHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC---C--CEEEEEcHH
Confidence 688999999999 99999999999999999999887 5 54 677754
No 140
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.49 E-value=6.8e-08 Score=77.17 Aligned_cols=27 Identities=15% Similarity=0.411 Sum_probs=25.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+|++++|+||||||||||+++|.++++
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 689999999999999999999999875
No 141
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.48 E-value=4.5e-08 Score=85.01 Aligned_cols=42 Identities=24% Similarity=0.291 Sum_probs=32.4
Q ss_pred eeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-Ee---cCCCH
Q 027060 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SF---DSQDP 147 (229)
Q Consensus 102 l~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~---~g~~~ 147 (229)
+++..|++++|+||||||||||+|+|+ ++. |..|. .+ +|++.
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~---~~~G~i~~~~~~G~~~ 205 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEE---LRTQEVSEKTERGRHT 205 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCC---CCCSCC---------C
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-Hhh---CcccccccccCCCCCc
Confidence 456689999999999999999999999 998 99996 66 66543
No 142
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.48 E-value=7.5e-08 Score=83.39 Aligned_cols=59 Identities=19% Similarity=0.161 Sum_probs=47.1
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCCH
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQDP 147 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~~ 147 (229)
+.++++++.|+... ++++|+ +|++++|+|+||+||||+++.|++.+. +.+|. .+.+.+.
T Consensus 77 ~~~~~l~~~~~~~~------~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~---~~~~~v~l~~~d~ 136 (295)
T 1ls1_A 77 TVYEALKEALGGEA------RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK---GKGRRPLLVAADT 136 (295)
T ss_dssp HHHHHHHHHTTSSC------CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH---HTTCCEEEEECCS
T ss_pred HHHHHHHHHHCCCC------ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEecCCc
Confidence 44567788886531 478888 899999999999999999999999998 77775 6666553
No 143
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.47 E-value=1.5e-08 Score=88.54 Aligned_cols=42 Identities=19% Similarity=0.209 Sum_probs=27.0
Q ss_pred eeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-Ee---cCCC
Q 027060 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SF---DSQD 146 (229)
Q Consensus 102 l~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~---~g~~ 146 (229)
+++.+|++++|+|+||+|||||+|+|+|++. +..|. .+ .|+.
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~---~~~G~I~~~~~~G~~ 213 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG---LRTNEISEHLGRGKH 213 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc---ccccceeeecCCCcc
Confidence 6788999999999999999999999999998 89896 54 5543
No 144
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.46 E-value=1e-07 Score=77.25 Aligned_cols=31 Identities=26% Similarity=0.294 Sum_probs=25.1
Q ss_pred eeeecCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 101 sl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.+...+|++++|+|+||||||||+++|++.+
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 3566789999999999999999999999976
No 145
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.43 E-value=1.3e-08 Score=85.31 Aligned_cols=48 Identities=27% Similarity=0.390 Sum_probs=40.0
Q ss_pred EEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 79 ~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+++++.+.|+... +++++++.+++| ++|+||||+|||||+++|++.+.
T Consensus 27 ~l~~l~~~~~~~~----~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 27 ELKEIVEFLKNPS----RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp HHHHHHHHHHCHH----HHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCHH----HHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC
Confidence 3456666675543 788999999999 99999999999999999999875
No 146
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.43 E-value=1.5e-07 Score=85.17 Aligned_cols=45 Identities=18% Similarity=0.387 Sum_probs=37.3
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
|+++|+ +.|++.. .+++.+|++++|+||||||||||+++|.+++.
T Consensus 7 l~~~~~-~~~~~~~---------~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 7 LELSNF-KSYRGVT---------KVGFGESNFTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp EEEESC-SSCCSEE---------EEECTTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEeCE-EEECCce---------eEEecCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 778888 6775421 24567899999999999999999999999987
No 147
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.42 E-value=1.6e-08 Score=86.18 Aligned_cols=48 Identities=27% Similarity=0.390 Sum_probs=40.2
Q ss_pred EEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 79 ~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+++++.+.|+... +++++++.+++| ++|+||||+|||||+++|++.+.
T Consensus 51 ~l~~l~~~~~~~~----~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 51 ELKEIVEFLKNPS----RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp HHHHHHHHHHCHH----HHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCHH----HHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC
Confidence 3456666676543 788999999999 99999999999999999999875
No 148
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.39 E-value=7e-08 Score=77.25 Aligned_cols=36 Identities=19% Similarity=0.343 Sum_probs=29.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccCCC---Cce-EecCCC
Q 027060 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KAS-SFDSQD 146 (229)
Q Consensus 108 e~v~IiGpNGsGKSTLlk~L~gll~~~~p~---~G~-~~~g~~ 146 (229)
++++|+|+||||||||+++|+|++. |. .|. .++|.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~---~~g~~~G~I~~dg~~ 42 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR---ERGLRVAVVKRHAHG 42 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH---HTTCCEEEEEC----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh---hcCCceEEEEEcCcc
Confidence 5899999999999999999999999 87 786 777765
No 149
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.38 E-value=1e-07 Score=85.40 Aligned_cols=37 Identities=27% Similarity=0.317 Sum_probs=34.6
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+++++++.+++|++++|+||||||||||+++|++.+.
T Consensus 158 ~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 158 FLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp HHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred HHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 6889999999999999999999999999999999654
No 150
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.37 E-value=8e-08 Score=80.34 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=29.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHH---HHhcccCCCCce
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVV---RRINKIWPQKAS 140 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~---gll~~~~p~~G~ 140 (229)
++++++|+|+||||||||+++|+ |+.. ++.|.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~---~~~G~ 60 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH---LSSGH 60 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC---EEHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE---ecHHH
Confidence 47999999999999999999999 8777 88885
No 151
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.36 E-value=2.3e-07 Score=75.87 Aligned_cols=28 Identities=29% Similarity=0.513 Sum_probs=26.5
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
++|++++|+||||||||||++.|++.++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999999999886
No 152
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.36 E-value=1.4e-07 Score=76.61 Aligned_cols=40 Identities=23% Similarity=0.340 Sum_probs=33.8
Q ss_pred eecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCC
Q 027060 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ 145 (229)
Q Consensus 103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~ 145 (229)
...+|++++|+|+||||||||+++|.+++. +.+|. .+.+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~---~~~~~v~~~~~ 58 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLR---EQGISVCVFHM 58 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHH---HTTCCEEEEEG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHh---hcCCeEEEecc
Confidence 467899999999999999999999999998 77775 44443
No 153
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=98.34 E-value=3e-07 Score=81.81 Aligned_cols=36 Identities=25% Similarity=0.318 Sum_probs=31.6
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
.++++++++.+| +++|+||||||||||+.+|+..+.
T Consensus 13 ~~~~~~i~~~~g-~~~i~G~NGaGKTTll~ai~~al~ 48 (365)
T 3qf7_A 13 GLKNVDIEFQSG-ITVVEGPNGAGKSSLFEAISFALF 48 (365)
T ss_dssp TEEEEEEECCSE-EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CccceEEecCCC-eEEEECCCCCCHHHHHHHHHHHhc
Confidence 456888999998 889999999999999999997653
No 154
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.34 E-value=3.5e-07 Score=75.37 Aligned_cols=41 Identities=12% Similarity=0.244 Sum_probs=33.6
Q ss_pred eecCCcEEEEEcCCCCcHHHHHHHHHHH--hcccCC-----CCce-EecCCC
Q 027060 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWP-----QKAS-SFDSQD 146 (229)
Q Consensus 103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gl--l~~~~p-----~~G~-~~~g~~ 146 (229)
-|++|++++|+||||||||||++.|++. ++ + ..|. ++.+.+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLP---IDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSC---GGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCc---hhcCCCCCeEEEEECCC
Confidence 4789999999999999999999999994 43 3 3455 677665
No 155
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.33 E-value=1.2e-07 Score=80.04 Aligned_cols=33 Identities=24% Similarity=0.444 Sum_probs=30.4
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHH---HHhcccCCCCce
Q 027060 105 NVKHIVGLAGPPGAGKSTLAAEVV---RRINKIWPQKAS 140 (229)
Q Consensus 105 ~~Ge~v~IiGpNGsGKSTLlk~L~---gll~~~~p~~G~ 140 (229)
.+|++++|+|||||||||++++|+ |+.. +++|.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~---~d~g~ 60 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL---LDSGA 60 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE---EEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc---CCCCc
Confidence 789999999999999999999999 7777 88886
No 156
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.33 E-value=2.2e-07 Score=81.39 Aligned_cols=46 Identities=22% Similarity=0.183 Sum_probs=40.4
Q ss_pred cceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCC
Q 027060 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQD 146 (229)
Q Consensus 98 ~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~ 146 (229)
.+++|.+.+|++++|+|+||+||||++..|++.+. +.+|. .+.+.+
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~---~~g~kVllid~D 142 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA---ELGYKVLIAAAD 142 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH---HTTCCEEEEECC
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEeCC
Confidence 58899999999999999999999999999999998 77775 555554
No 157
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.29 E-value=2.6e-08 Score=87.81 Aligned_cols=56 Identities=23% Similarity=0.229 Sum_probs=47.8
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G 139 (229)
+++.+++.+.|+... +++++++.+.+|.+++|+|+||+|||||++.|++.+. +.++
T Consensus 30 ~ie~~~~~~~~~~~~----~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~---~~~~ 85 (341)
T 2p67_A 30 LVESRHPRHQALSTQ----LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI---REGL 85 (341)
T ss_dssp HHHCCCHHHHHHHHH----HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH---HTTC
T ss_pred HhhcCCchhhhHHHH----HHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH---hcCC
Confidence 466677777776654 7889999999999999999999999999999999987 5555
No 158
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.27 E-value=3.8e-07 Score=85.53 Aligned_cols=42 Identities=29% Similarity=0.272 Sum_probs=36.7
Q ss_pred eecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc--e-EecCCCH
Q 027060 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA--S-SFDSQDP 147 (229)
Q Consensus 103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G--~-~~~g~~~ 147 (229)
.+.+|++++|+|+||||||||+++|++.+. +.+| . .++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~---~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLM---EMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHH---TTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhc---ccCCceEEEECCcHH
Confidence 578999999999999999999999999999 8887 4 4777543
No 159
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.26 E-value=5.5e-07 Score=70.92 Aligned_cols=27 Identities=41% Similarity=0.625 Sum_probs=25.0
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.+|++++|+|+|||||||++++|++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 468999999999999999999999975
No 160
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.25 E-value=2.1e-07 Score=77.25 Aligned_cols=31 Identities=19% Similarity=0.179 Sum_probs=27.5
Q ss_pred eeeeecCCcEEEEEcCCCCcHHHHHHHHHHH
Q 027060 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 100 isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gl 130 (229)
-+....+|++++|+|+||||||||+++|+++
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 3456679999999999999999999999885
No 161
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.25 E-value=1.6e-07 Score=83.55 Aligned_cols=46 Identities=24% Similarity=0.194 Sum_probs=32.4
Q ss_pred ccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-Eec-CC
Q 027060 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFD-SQ 145 (229)
Q Consensus 97 l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~-g~ 145 (229)
++++++. .+|++++|+|+||+|||||+++|+|++.. +..|. .+. |.
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~--~~~G~I~~~~G~ 253 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNE--ILTNDVSNVSGL 253 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSC--CCCC--------
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccc--cccCCccccCCC
Confidence 4566664 47999999999999999999999997631 46675 443 44
No 162
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.25 E-value=1.5e-06 Score=75.22 Aligned_cols=32 Identities=28% Similarity=0.256 Sum_probs=29.9
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc
Q 027060 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (229)
Q Consensus 105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G 139 (229)
.+|++++|+|+||+||||+++.|++.+. +..|
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~---~~~G 134 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM---LEKH 134 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH---HTTC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH---HhcC
Confidence 4799999999999999999999999998 7778
No 163
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.23 E-value=4.4e-07 Score=79.06 Aligned_cols=45 Identities=18% Similarity=0.278 Sum_probs=37.5
Q ss_pred ceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCC
Q 027060 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQD 146 (229)
Q Consensus 99 ~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~ 146 (229)
.+++...+|++++|+|+|||||||+++.|++.+. +.+|. .+.+.+
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~---~~g~kV~lv~~D 141 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV---DEGKSVVLAAAD 141 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEEEEEC
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH---hcCCEEEEEccc
Confidence 3566678999999999999999999999999998 77774 554444
No 164
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.22 E-value=6.3e-07 Score=70.24 Aligned_cols=27 Identities=41% Similarity=0.646 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
.|++++|+|+||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 468899999999999999999999876
No 165
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.22 E-value=3.1e-07 Score=80.18 Aligned_cols=35 Identities=31% Similarity=0.395 Sum_probs=30.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh--------cccCCCCce-EecCC
Q 027060 108 HIVGLAGPPGAGKSTLAAEVVRRI--------NKIWPQKAS-SFDSQ 145 (229)
Q Consensus 108 e~v~IiGpNGsGKSTLlk~L~gll--------~~~~p~~G~-~~~g~ 145 (229)
++++|+|+||||||||+|+|.|+. . ++.|. .++|.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~---~d~G~i~idg~ 48 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIE---NEFGEVSVDDQ 48 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEEC---SSCCSCCEEEE
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEE---ecCcccCccHH
Confidence 589999999999999999999986 5 78885 66654
No 166
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.21 E-value=2.7e-07 Score=83.67 Aligned_cols=35 Identities=37% Similarity=0.443 Sum_probs=32.6
Q ss_pred ccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 97 l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll 131 (229)
-++++|+++.|++++|+|+||||||||+++|++..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 35899999999999999999999999999999973
No 167
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.20 E-value=8.7e-07 Score=72.53 Aligned_cols=32 Identities=16% Similarity=0.279 Sum_probs=26.8
Q ss_pred eeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 101 sl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
|+...+|++++|+||||||||||++.|.+.++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34455899999999999999999999999865
No 168
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.18 E-value=8.9e-07 Score=79.69 Aligned_cols=40 Identities=25% Similarity=0.471 Sum_probs=33.6
Q ss_pred eecCCcEEEEEcCCCCcHHHHHHHHHH------------HhcccCCCCce-EecCC
Q 027060 103 NVNVKHIVGLAGPPGAGKSTLAAEVVR------------RINKIWPQKAS-SFDSQ 145 (229)
Q Consensus 103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~g------------ll~~~~p~~G~-~~~g~ 145 (229)
.+..|+++||+|+||+|||||+++|+| .+. |+.|. .+.|.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~---p~~G~v~v~~~ 68 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATID---PEEAKVAVPDE 68 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCC---TTEEEEEECCH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeec---ceeeeeeeCCc
Confidence 567899999999999999999999999 344 77886 66654
No 169
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.13 E-value=7.3e-07 Score=80.14 Aligned_cols=53 Identities=21% Similarity=0.237 Sum_probs=46.5
Q ss_pred eEEEeeeeEEcCcccccccccc--------------ceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 77 VVEARCMDEVYDALAQRLLPTS--------------ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~--------------~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
-+.++||+..|+... ..++ |+.+.|.+|+.++|+|++|+|||||++.|++.+.
T Consensus 133 ri~Fe~ltp~yP~er---~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 133 KILFENLTPLHANSR---LRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp SCCTTTSCEESCCSB---CCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred CceeccccccCCCCc---cccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 378899999998643 2566 8999999999999999999999999999999874
No 170
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=98.12 E-value=2.1e-06 Score=66.79 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=25.7
Q ss_pred ceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 99 ~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll 131 (229)
+..+++.+| +.+|+|||||||||++.+|.-.+
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 444555544 99999999999999999998655
No 171
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.07 E-value=1.4e-06 Score=70.67 Aligned_cols=33 Identities=27% Similarity=0.529 Sum_probs=28.8
Q ss_pred ceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 99 ~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll 131 (229)
++--.+.+|.+++|+|++|||||||++.|.+.+
T Consensus 13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 444577899999999999999999999999975
No 172
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.06 E-value=4.7e-06 Score=72.61 Aligned_cols=35 Identities=26% Similarity=0.384 Sum_probs=26.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHH-HhcccCCCCce-EecCCC
Q 027060 109 IVGLAGPPGAGKSTLAAEVVR-RINKIWPQKAS-SFDSQD 146 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~g-ll~~~~p~~G~-~~~g~~ 146 (229)
.+.|.||||+|||||+++|++ ++. +..|. .++|.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~---~~~g~i~~~~~~ 74 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFG---PGVYRLKIDVRQ 74 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSC---TTCCC-------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcC---CCCCeEEeccee
Confidence 389999999999999999999 667 78886 666654
No 173
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.04 E-value=2.3e-06 Score=68.39 Aligned_cols=24 Identities=38% Similarity=0.422 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
.++|+|+||||||||++.++|...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 689999999999999999999765
No 174
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.03 E-value=1.9e-06 Score=70.45 Aligned_cols=34 Identities=24% Similarity=0.446 Sum_probs=27.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce
Q 027060 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (229)
Q Consensus 107 Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~ 140 (229)
+.+++|+|++||||||++++|++.+....++.|.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~ 38 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGA 38 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcc
Confidence 5689999999999999999999987311166675
No 175
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.03 E-value=4e-07 Score=85.14 Aligned_cols=55 Identities=24% Similarity=0.358 Sum_probs=45.2
Q ss_pred EEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce
Q 027060 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (229)
Q Consensus 78 i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~ 140 (229)
+-++++.+.|.... ++.++++++ +|++++|+||||+|||||+++|++.+. +..|.
T Consensus 84 ~G~~~vk~~i~~~~----~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~---~~~~~ 138 (543)
T 3m6a_A 84 HGLEKVKERILEYL----AVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG---RKFVR 138 (543)
T ss_dssp SSCHHHHHHHHHHH----HHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT---CEEEE
T ss_pred ccHHHHHHHHHHHH----HHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC---CCeEE
Confidence 33566777775543 677888888 899999999999999999999999998 76665
No 176
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.01 E-value=4.3e-06 Score=69.52 Aligned_cols=37 Identities=24% Similarity=0.423 Sum_probs=27.6
Q ss_pred cccceeeeec---CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 96 PTSALASNVN---VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 96 ~l~~isl~i~---~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
-|.++++.+. +|.+++|.|++||||||+++.|...+.
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3566666665 999999999999999999999999998
No 177
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.99 E-value=1.7e-06 Score=81.73 Aligned_cols=58 Identities=22% Similarity=0.317 Sum_probs=47.6
Q ss_pred eeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCC-ce-EecCC
Q 027060 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-AS-SFDSQ 145 (229)
Q Consensus 81 ~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~-G~-~~~g~ 145 (229)
++++..|+... +++++++.+..|+.++|+||||+|||||+++|++++. +.. |. .+.+.
T Consensus 38 ~~l~~i~G~~~----~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~---~~~~~~~~~~~~ 97 (604)
T 3k1j_A 38 KLIDQVIGQEH----AVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLP---TETLEDILVFPN 97 (604)
T ss_dssp SHHHHCCSCHH----HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSC---CSSCEEEEEECC
T ss_pred cccceEECchh----hHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCC---cccCCeEEEeCC
Confidence 45555677654 7889999999999999999999999999999999998 776 44 44443
No 178
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.96 E-value=4e-06 Score=66.28 Aligned_cols=28 Identities=29% Similarity=0.306 Sum_probs=25.8
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
.+|++++|+|++||||||++++|.+.+.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3689999999999999999999999886
No 179
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.90 E-value=6.3e-06 Score=67.78 Aligned_cols=48 Identities=15% Similarity=0.330 Sum_probs=34.3
Q ss_pred cccce-eeeecCCcEEEEEcCCCCcHHHHHHHH-HHHhcccCCCCce-EecCCC
Q 027060 96 PTSAL-ASNVNVKHIVGLAGPPGAGKSTLAAEV-VRRINKIWPQKAS-SFDSQD 146 (229)
Q Consensus 96 ~l~~i-sl~i~~Ge~v~IiGpNGsGKSTLlk~L-~gll~~~~p~~G~-~~~g~~ 146 (229)
.|+.+ .--+++|++++|+|+||+|||||+..+ .+..+ ...+. ++....
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~---~~~~v~~~~~e~ 61 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLK---MGEPGIYVALEE 61 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEESSS
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccC
Confidence 45555 567899999999999999999996544 55555 44444 555543
No 180
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.90 E-value=5.2e-06 Score=73.37 Aligned_cols=33 Identities=36% Similarity=0.578 Sum_probs=28.9
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce
Q 027060 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (229)
Q Consensus 105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~ 140 (229)
..+.+++|+|++|||||||++.|+|.+. +.+|.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~---~~~~~ 104 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT---ERGHK 104 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH---HTTCC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhh---hcCCe
Confidence 3578999999999999999999999987 66663
No 181
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.88 E-value=3.5e-06 Score=78.11 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=31.7
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.++++++++.+| +.+|+|+||||||||+.+|..++
T Consensus 50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~ll 84 (517)
T 4ad8_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLL 84 (517)
T ss_dssp TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHHT
T ss_pred ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHHh
Confidence 466889999999 99999999999999999998873
No 182
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.87 E-value=6.3e-06 Score=74.31 Aligned_cols=41 Identities=24% Similarity=0.280 Sum_probs=31.2
Q ss_pred eecCCcEEEEEcCCCCcHHHHHHHHH--HHhcccCCCC----c-e-EecCCC
Q 027060 103 NVNVKHIVGLAGPPGAGKSTLAAEVV--RRINKIWPQK----A-S-SFDSQD 146 (229)
Q Consensus 103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~--gll~~~~p~~----G-~-~~~g~~ 146 (229)
-|++|++++|+||||||||||++.|+ ++++ ++. | . ++++++
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p---~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIP---LDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSC---GGGTCCSSEEEEEESSS
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccC---cccCCCCCcEEEEeCCC
Confidence 58899999999999999999999554 4444 422 2 4 677764
No 183
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.85 E-value=1.9e-06 Score=75.31 Aligned_cols=51 Identities=25% Similarity=0.444 Sum_probs=41.5
Q ss_pred eeeEEcCccccccccccceeeeecCCcE--EEEEcCCCCcHHHHHHHHHHHhcccCCCCc
Q 027060 82 CMDEVYDALAQRLLPTSALASNVNVKHI--VGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (229)
Q Consensus 82 ~ls~~y~~~~~~~~~l~~isl~i~~Ge~--v~IiGpNGsGKSTLlk~L~gll~~~~p~~G 139 (229)
+++..|+... +++.++..|..|++ +.|.||+|+||||+++++++.+. +..+
T Consensus 23 ~~~~~~g~~~----~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~---~~~~ 75 (340)
T 1sxj_C 23 TLDEVYGQNE----VITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY---GKNY 75 (340)
T ss_dssp SGGGCCSCHH----HHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH---TTSH
T ss_pred cHHHhcCcHH----HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc---CCCc
Confidence 3444555543 67788899999998 99999999999999999999987 5544
No 184
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.84 E-value=1.3e-05 Score=65.41 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=26.4
Q ss_pred ceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 99 ~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+.++++.+ .+.+|+|||||||||++.+|.-.+.
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 44555555 4999999999999999999976664
No 185
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.83 E-value=9.4e-06 Score=64.96 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.++|+|+||||||||++.|+|..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999974
No 186
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.82 E-value=1e-05 Score=64.50 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=26.8
Q ss_pred ceeeeecCCcEEEEEcCCCCcHHHHHHHHHHH
Q 027060 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 99 ~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gl 130 (229)
++|+...+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888999999999999999999999999886
No 187
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.82 E-value=6e-06 Score=67.21 Aligned_cols=35 Identities=26% Similarity=0.291 Sum_probs=31.7
Q ss_pred eeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc
Q 027060 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (229)
Q Consensus 102 l~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G 139 (229)
+.+.+|.+++|+|++||||||+.+.|.+.+. |..|
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~---~~~g 54 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV---RDRR 54 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH---HHHC
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhc---cccC
Confidence 5577899999999999999999999999987 6777
No 188
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.81 E-value=8.5e-06 Score=65.75 Aligned_cols=21 Identities=48% Similarity=0.705 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 027060 109 IVGLAGPPGAGKSTLAAEVVR 129 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~g 129 (229)
+++|+|+|||||||+.++|++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999988
No 189
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.81 E-value=1e-05 Score=65.41 Aligned_cols=30 Identities=27% Similarity=0.434 Sum_probs=26.5
Q ss_pred eecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
...+|.+++|+||+|||||||.+.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 456899999999999999999999998764
No 190
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=97.81 E-value=1.2e-05 Score=70.47 Aligned_cols=30 Identities=23% Similarity=0.307 Sum_probs=23.7
Q ss_pred ceeeeecCCcEEEEEcCCCCcHHHHHHHHHH
Q 027060 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (229)
Q Consensus 99 ~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~g 129 (229)
+..+++.+ .+.+|+||||||||||+.+|..
T Consensus 16 ~~~i~f~~-~~~~i~G~NGsGKS~lleAi~~ 45 (339)
T 3qkt_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAILV 45 (339)
T ss_dssp EEEEECCS-EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEcCCC-CeEEEECCCCCCHHHHHHHHHH
Confidence 34455555 4889999999999999998754
No 191
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.80 E-value=2e-06 Score=79.69 Aligned_cols=47 Identities=26% Similarity=0.373 Sum_probs=37.9
Q ss_pred EeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 80 ~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
++++...|.+.. +++++++.+++| +.|+||||+|||||+++|++...
T Consensus 43 l~~lv~~l~~~~----~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 43 LKEIVEFLKNPS----RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp HHHHHHHHHCGG----GTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT
T ss_pred HHHHHHHhhchh----hhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC
Confidence 344544554433 678999999999 99999999999999999999864
No 192
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.78 E-value=1.1e-05 Score=64.83 Aligned_cols=21 Identities=43% Similarity=0.589 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 027060 109 IVGLAGPPGAGKSTLAAEVVR 129 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~g 129 (229)
+++|+|+|||||||++++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999999
No 193
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.74 E-value=1.5e-05 Score=63.26 Aligned_cols=36 Identities=25% Similarity=0.395 Sum_probs=30.4
Q ss_pred eeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc
Q 027060 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (229)
Q Consensus 101 sl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G 139 (229)
.+...+|.+++|+|++||||||+.+.|+..+. ..++
T Consensus 7 ~~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~---~~~~ 42 (186)
T 2yvu_A 7 YKCIEKGIVVWLTGLPGSGKTTIATRLADLLQ---KEGY 42 (186)
T ss_dssp -CCCSCCEEEEEECCTTSSHHHHHHHHHHHHH---HTTC
T ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH---hcCC
Confidence 34556899999999999999999999999987 5554
No 194
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.74 E-value=1.8e-05 Score=71.82 Aligned_cols=55 Identities=20% Similarity=0.197 Sum_probs=43.5
Q ss_pred eeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCC
Q 027060 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQD 146 (229)
Q Consensus 81 ~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~ 146 (229)
+++++.|+... ++++|+ ++++++|+|+||+||||++..|++.+. +.++. .+.+.+
T Consensus 80 ~~L~~~~~~~~------~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~---~~g~~Vllvd~D 135 (425)
T 2ffh_A 80 EALKEALGGEA------RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK---GKGRRPLLVAAD 135 (425)
T ss_dssp HHHHHHTTSSC------CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEEECC
T ss_pred HHHHHHhCCCc------ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEeecc
Confidence 45777786532 477777 899999999999999999999999998 77664 554444
No 195
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.72 E-value=1.2e-05 Score=69.59 Aligned_cols=57 Identities=14% Similarity=0.194 Sum_probs=43.7
Q ss_pred EeeeeEEcCccccccccccc-eeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce-EecCCC
Q 027060 80 ARCMDEVYDALAQRLLPTSA-LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQD 146 (229)
Q Consensus 80 ~~~ls~~y~~~~~~~~~l~~-isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~g~~ 146 (229)
.+++.+.|++.. ++ ++++++ |.+++++|+||+||||++..|++.+. +.++. .+.+.+
T Consensus 77 ~~~l~~~~~~~~------~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~---~~g~~v~l~~~D 135 (297)
T 1j8m_F 77 YDELSNLFGGDK------EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK---KKGFKVGLVGAD 135 (297)
T ss_dssp HHHHHHHTTCSC------CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH---HTTCCEEEEECC
T ss_pred HHHHHHHhcccc------ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEecC
Confidence 355667776532 36 788876 99999999999999999999999998 76664 444443
No 196
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.71 E-value=2e-05 Score=65.90 Aligned_cols=27 Identities=26% Similarity=0.592 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
.--+++|.|+.||||||+.+.|...+.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 345799999999999999999988654
No 197
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.66 E-value=1.9e-05 Score=61.86 Aligned_cols=26 Identities=38% Similarity=0.434 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gll 131 (229)
+|..++|+|++|+|||||++.|++..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999999999864
No 198
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.65 E-value=2.7e-05 Score=62.64 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 107 Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
..+++|+|++||||||+.+.|++.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999998764
No 199
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.65 E-value=2e-05 Score=69.46 Aligned_cols=45 Identities=13% Similarity=0.171 Sum_probs=31.4
Q ss_pred eeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHH
Q 027060 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (229)
Q Consensus 81 ~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~g 129 (229)
+++.+.|+... ...+|++++++++ .++|+|++|||||||++.|+|
T Consensus 12 ~~~~~~~~~~~-~~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 12 QRACTALGDHG-DSSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp TTTTTSCSSCC-SSCCC----CCCC---EEEEECBTTSSHHHHHHHHHT
T ss_pred HHHHHhhCccc-cccccccccccCC---EEEEECCCCCcHHHHHHHHhC
Confidence 34555555321 1126889999998 999999999999999999999
No 200
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.61 E-value=5e-06 Score=73.77 Aligned_cols=45 Identities=18% Similarity=0.150 Sum_probs=35.3
Q ss_pred eEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 77 ~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.+.+.++.+.|+.+. ++++++|.| +|+|++|+|||||++.|.+..
T Consensus 17 ~v~~~~l~~~~~~k~----~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 17 YVGFANLPNQVHRKS----VKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp ----CCHHHHHHTHH----HHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred eEEeccchHHhCCee----ecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 488899998887654 678888876 999999999999999997753
No 201
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.60 E-value=4.1e-05 Score=63.33 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=25.4
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 104 i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
-.+|.+++|+|++||||||+.++|++.+.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45789999999999999999999998653
No 202
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.60 E-value=7.5e-05 Score=66.00 Aligned_cols=40 Identities=20% Similarity=0.390 Sum_probs=31.0
Q ss_pred eecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc-e-EecCC
Q 027060 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-S-SFDSQ 145 (229)
Q Consensus 103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G-~-~~~g~ 145 (229)
-+++|+++.|.|+||+|||||+..++.... ...+ . +++..
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~---~~g~~vlyi~~E 98 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQ---AAGGIAAFIDAE 98 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESS
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEECC
Confidence 577999999999999999999888887655 3444 3 55543
No 203
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.60 E-value=3.5e-05 Score=60.84 Aligned_cols=28 Identities=39% Similarity=0.684 Sum_probs=24.0
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
.+|.+++|+|++||||||+.+.|+..+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3678999999999999999999986543
No 204
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.58 E-value=3.6e-05 Score=68.31 Aligned_cols=41 Identities=22% Similarity=0.291 Sum_probs=34.8
Q ss_pred eecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce--EecCCC
Q 027060 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS--SFDSQD 146 (229)
Q Consensus 103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~--~~~g~~ 146 (229)
-+++|+++.|.||||||||||+..++.... +..|. ++++..
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~---~~gg~VlyId~E~ 99 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQ---KMGGVAAFIDAEH 99 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESSC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEeccc
Confidence 477999999999999999999999999887 66663 666654
No 205
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.56 E-value=2.2e-05 Score=67.74 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gll 131 (229)
++.+++|+|++|+|||||++.|.|..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 45589999999999999999999963
No 206
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.54 E-value=4.4e-05 Score=60.70 Aligned_cols=33 Identities=21% Similarity=0.104 Sum_probs=20.7
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHH
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~g 129 (229)
+++++++..+.. .++|+|++|+|||||++.+.+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 567888887766 789999999999999999998
No 207
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.50 E-value=5.3e-05 Score=63.19 Aligned_cols=34 Identities=29% Similarity=0.513 Sum_probs=24.9
Q ss_pred ccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 97 l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
++++++.++.| +.|.||+|+|||||++.|++.+.
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 34555555555 88999999999999999999875
No 208
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.49 E-value=6.9e-05 Score=58.02 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+++|+|++||||||+.+.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 789999999999999999998764
No 209
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.48 E-value=4.6e-05 Score=59.02 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 108 e~v~IiGpNGsGKSTLlk~L~gll 131 (229)
-.++|+|++|+|||||++.++|..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999854
No 210
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.45 E-value=7.6e-05 Score=59.58 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 107 Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
-.+++|+|++|||||||++.|.+.+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 35899999999999999999999876
No 211
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.44 E-value=1.6e-05 Score=63.81 Aligned_cols=42 Identities=21% Similarity=0.195 Sum_probs=29.4
Q ss_pred eEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHH
Q 027060 84 DEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (229)
Q Consensus 84 s~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~g 129 (229)
++.|++.. .+++++++..++. .++|+|++|+|||||++.+.+
T Consensus 6 ~~~~~~~~---~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 6 DWIYSGFS---SVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp -------C---HHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHHH---HHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 34555542 1678888888776 579999999999999999976
No 212
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.41 E-value=5.7e-05 Score=63.30 Aligned_cols=30 Identities=23% Similarity=0.320 Sum_probs=27.1
Q ss_pred eecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
....+.++.|+|++||||||+.+.|...+.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 566789999999999999999999999764
No 213
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.40 E-value=8.5e-05 Score=65.86 Aligned_cols=32 Identities=25% Similarity=0.311 Sum_probs=26.4
Q ss_pred ccceeeeecCCcEEEEEcCCCCcHHHHHHHHHH
Q 027060 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (229)
Q Consensus 97 l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~g 129 (229)
+++..+++.+ .+.+|+|+|||||||++..|.=
T Consensus 16 ~~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 16 HVNSRIKFEK-GIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEEECCS-EEEEEEECTTSSHHHHHHHHHH
T ss_pred ccceEEecCC-CeEEEECCCCCCHHHHHHHHHH
Confidence 3456666666 4999999999999999999974
No 214
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.38 E-value=8.1e-05 Score=58.33 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 027060 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 108 e~v~IiGpNGsGKSTLlk~L~gl 130 (229)
-.++|+|++|+|||||++.|++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999984
No 215
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.37 E-value=0.00013 Score=57.08 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 107 Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+.++.|+|++||||||+.+.|...+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999998764
No 216
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.34 E-value=0.00014 Score=57.15 Aligned_cols=26 Identities=23% Similarity=0.483 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 107 Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
|.++.|.|++||||||+.+.|...+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999998765
No 217
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.34 E-value=9.1e-05 Score=66.65 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=24.9
Q ss_pred eecCCcEEEEEcCCCCcHHHHHHHHHHH
Q 027060 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.+..+..++|+|+||+|||||++.|+|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4567889999999999999999999987
No 218
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.33 E-value=0.00013 Score=57.58 Aligned_cols=28 Identities=21% Similarity=0.475 Sum_probs=24.6
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
..+.++.|+|++||||||+.+.|...+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4678999999999999999999987654
No 219
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.33 E-value=0.00014 Score=57.89 Aligned_cols=24 Identities=38% Similarity=0.708 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+++|+|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999999764
No 220
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.33 E-value=0.00013 Score=59.20 Aligned_cols=24 Identities=42% Similarity=0.601 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHH
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVR 129 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~g 129 (229)
.+.+++|.|++||||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999987
No 221
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.30 E-value=0.00013 Score=56.20 Aligned_cols=20 Identities=35% Similarity=0.670 Sum_probs=18.8
Q ss_pred cEEEEEcCCCCcHHHHHHHH
Q 027060 108 HIVGLAGPPGAGKSTLAAEV 127 (229)
Q Consensus 108 e~v~IiGpNGsGKSTLlk~L 127 (229)
.+++|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
No 222
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.28 E-value=0.00015 Score=60.87 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+++|+||+|||||||.+.|+..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 689999999999999999998764
No 223
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.28 E-value=0.00016 Score=60.51 Aligned_cols=27 Identities=30% Similarity=0.609 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
..-+++|.||+||||||+.+.|+..+.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345899999999999999999997664
No 224
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.28 E-value=0.00014 Score=57.03 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
++.|+|++||||||+.+.|+..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998764
No 225
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.28 E-value=9.4e-05 Score=58.27 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.++|+|++|+|||||++.+++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999853
No 226
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.28 E-value=0.00011 Score=71.68 Aligned_cols=32 Identities=34% Similarity=0.490 Sum_probs=29.1
Q ss_pred eeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 101 sl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+|.+.+|+.+.|+||||||||||+++|++.+.
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred hcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 34788999999999999999999999999875
No 227
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.25 E-value=7.8e-05 Score=60.01 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+++|.|++||||||+++.|...+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999886
No 228
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.24 E-value=0.00019 Score=57.20 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=24.2
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.+|.+++|.|+.||||||+.+.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999998865
No 229
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.24 E-value=0.00015 Score=57.02 Aligned_cols=28 Identities=32% Similarity=0.506 Sum_probs=24.5
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
..+.++.|+|++||||||+.+.|+..+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 4678899999999999999999987653
No 230
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.21 E-value=0.00018 Score=70.39 Aligned_cols=40 Identities=28% Similarity=0.361 Sum_probs=33.8
Q ss_pred CeEEEeeeeEEcCccccccccccceeeeecCCcEEEEEcCCCCcHHHHH
Q 027060 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLA 124 (229)
Q Consensus 76 ~~i~~~~ls~~y~~~~~~~~~l~~isl~i~~Ge~v~IiGpNGsGKSTLl 124 (229)
..|+|++.. .. -|+||+++|+.|.+++|.|.+|||||||.
T Consensus 14 ~~I~i~gar----~h-----NLkni~v~iP~~~l~viTGvSGSGKSSLa 53 (842)
T 2vf7_A 14 GFVQVRGAR----QH-----NLKDISVKVPRDALVVFTGVSGSGKSSLA 53 (842)
T ss_dssp TEEEEEEEC----ST-----TCCSEEEEEESSSEEEEESSTTSSHHHHH
T ss_pred CeEEEeecc----cc-----CCCCeeEEecCCCEEEEECCCCCCHHHHH
Confidence 357777663 11 48899999999999999999999999998
No 231
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.21 E-value=0.00024 Score=56.74 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+|.+++|.|+.||||||+.+.|...+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 477899999999999999999999776
No 232
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.20 E-value=0.00025 Score=56.07 Aligned_cols=28 Identities=29% Similarity=0.568 Sum_probs=24.8
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
.++.+++|+|+.||||||+.+.|+..+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4678999999999999999999987654
No 233
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.19 E-value=0.00021 Score=56.85 Aligned_cols=24 Identities=42% Similarity=0.576 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 027060 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 107 Ge~v~IiGpNGsGKSTLlk~L~gl 130 (229)
..+++|+|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 468999999999999999999874
No 234
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.17 E-value=0.00027 Score=55.57 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 107 Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+.++.|+|++||||||+.+.|+..+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999988664
No 235
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.17 E-value=0.00019 Score=59.15 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
.++|+|++|+|||||++.|+|...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 589999999999999999999654
No 236
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.16 E-value=0.0002 Score=68.36 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=27.1
Q ss_pred eeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 101 sl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
++.+.++..++|+|++|+|||||++.|++...
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~ 34 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTG 34 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcC
Confidence 45678899999999999999999999998765
No 237
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.16 E-value=0.00023 Score=55.39 Aligned_cols=22 Identities=45% Similarity=0.634 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 027060 108 HIVGLAGPPGAGKSTLAAEVVR 129 (229)
Q Consensus 108 e~v~IiGpNGsGKSTLlk~L~g 129 (229)
.++.|.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 238
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.16 E-value=0.00022 Score=61.25 Aligned_cols=31 Identities=29% Similarity=0.445 Sum_probs=27.6
Q ss_pred eeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 102 l~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+.+.++..+.|.||+|+|||||++.|++.+.
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 4567889999999999999999999999764
No 239
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.15 E-value=0.00028 Score=55.49 Aligned_cols=27 Identities=37% Similarity=0.532 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
++.+++|+|++||||||+.+.|+..+.
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999987553
No 240
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.15 E-value=0.00029 Score=56.55 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=24.9
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
.+|.+++|.|+.||||||+.+.|...+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999987653
No 241
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.14 E-value=0.00027 Score=56.22 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 108 e~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
.+++|+|++|||||||+..|...+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 4799999999999999999999875
No 242
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.13 E-value=0.00013 Score=66.46 Aligned_cols=42 Identities=14% Similarity=0.324 Sum_probs=36.7
Q ss_pred ccccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc
Q 027060 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (229)
Q Consensus 95 ~~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G 139 (229)
..|+++..-+.+|+++.|.|++|+|||||+..|++... +..|
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~---~~~g 232 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA---TKTN 232 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH---HHSS
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH---HhCC
Confidence 36788887899999999999999999999999999876 5445
No 243
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.13 E-value=0.00029 Score=56.26 Aligned_cols=24 Identities=38% Similarity=0.667 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+++|.|++||||||+.+.|+..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999999764
No 244
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.12 E-value=0.00013 Score=57.89 Aligned_cols=30 Identities=27% Similarity=0.505 Sum_probs=25.7
Q ss_pred eecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
.+..+.+++|+|+.||||||+.+.|+..+.
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345678999999999999999999988654
No 245
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.11 E-value=0.00033 Score=56.21 Aligned_cols=29 Identities=28% Similarity=0.337 Sum_probs=25.2
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 104 i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
..+|.+++|.|+.||||||+.+.|...+.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35788999999999999999999998654
No 246
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.10 E-value=0.00024 Score=55.63 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=19.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
++.++.|.|++||||||+.+.|...+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 567899999999999999999987654
No 247
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.10 E-value=0.00028 Score=56.90 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q 027060 110 VGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 110 v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+.|+||+|||||||++.|....+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999987653
No 248
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.09 E-value=0.00038 Score=61.81 Aligned_cols=32 Identities=28% Similarity=0.239 Sum_probs=27.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~ 140 (229)
.+..++|+|++|||||||++.|.+... ...+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~---~~~~~ 65 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY---MQGSR 65 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH---TTTCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH---HCCCE
Confidence 567899999999999999999999876 55553
No 249
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.06 E-value=0.00024 Score=59.91 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999964
No 250
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.04 E-value=0.00034 Score=59.89 Aligned_cols=28 Identities=29% Similarity=0.527 Sum_probs=24.4
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 104 i~~Ge~v~IiGpNGsGKSTLlk~L~gll 131 (229)
...+.++.|+||+||||||+.+.|...+
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3457899999999999999999998755
No 251
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.04 E-value=0.00046 Score=56.06 Aligned_cols=27 Identities=41% Similarity=0.596 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+|.+++|+|+.||||||+.+.|+..+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 577899999999999999999988664
No 252
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.04 E-value=0.00037 Score=54.73 Aligned_cols=24 Identities=42% Similarity=0.560 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
++.|.|++||||||+.+.|...+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998775
No 253
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.02 E-value=0.00025 Score=65.20 Aligned_cols=35 Identities=31% Similarity=0.511 Sum_probs=30.5
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
.++++++.+++| +.|+||+|+|||||++.|++...
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcC
Confidence 466778888877 88999999999999999999765
No 254
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.01 E-value=0.00044 Score=54.68 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+++|.|+.||||||+.+.|...+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998774
No 255
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.00 E-value=0.0003 Score=63.71 Aligned_cols=23 Identities=35% Similarity=0.574 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.++|+|+||+|||||++.|+|..
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 79999999999999999999974
No 256
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.00 E-value=0.00037 Score=69.00 Aligned_cols=29 Identities=31% Similarity=0.455 Sum_probs=27.7
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHH
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLA 124 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLl 124 (229)
-|+||+++|+++++++|.|.+|||||||.
T Consensus 33 NLkni~v~iP~~~lvv~tG~SGSGKSSLa 61 (972)
T 2r6f_A 33 NLKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (972)
T ss_dssp SCCSEEEEEETTSEEEEEESTTSSHHHHH
T ss_pred cCCceeeeccCCcEEEEECCCCCCHHHHH
Confidence 48899999999999999999999999996
No 257
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=96.99 E-value=0.00037 Score=69.17 Aligned_cols=29 Identities=24% Similarity=0.420 Sum_probs=27.7
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHH
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLA 124 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLl 124 (229)
-|+||+++|+++++++|.|.+|||||||.
T Consensus 35 NLkni~v~iP~~~lvv~tG~SGSGKSSLa 63 (993)
T 2ygr_A 35 NLRSVDLDLPRDALIVFTGLSGSGKSSLA 63 (993)
T ss_dssp SCCSEEEEEESSSEEEEEESTTSSHHHHH
T ss_pred ccCceeeeccCCCEEEEECCCCCcHHHHH
Confidence 48899999999999999999999999996
No 258
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.98 E-value=0.00057 Score=54.64 Aligned_cols=27 Identities=41% Similarity=0.636 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
.+.+++|+|+.||||||+.+.|+..+.
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 567899999999999999999988654
No 259
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.95 E-value=0.0003 Score=62.39 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=21.2
Q ss_pred CcE-EEEEcCCCCcHHHHHHHHHHHhc
Q 027060 107 KHI-VGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 107 Ge~-v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
|-. ++|+|++|||||||++.|+|...
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC--
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCc
Confidence 444 99999999999999999998653
No 260
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.95 E-value=0.00039 Score=63.21 Aligned_cols=32 Identities=25% Similarity=0.339 Sum_probs=28.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcccCCCCce
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G~ 140 (229)
++.+++++|+||+||||++..|+..+. +.++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~---~~G~k 127 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK---KRGYK 127 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH---HTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCe
Confidence 588999999999999999999999998 66553
No 261
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.94 E-value=0.0005 Score=56.22 Aligned_cols=28 Identities=21% Similarity=0.417 Sum_probs=23.1
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
.++.+++|+|+.||||||+.+.|+..+.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3567899999999999999999987553
No 262
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=96.93 E-value=0.00034 Score=69.12 Aligned_cols=29 Identities=28% Similarity=0.476 Sum_probs=27.8
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHH
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLA 124 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLl 124 (229)
-|+||+++|+++++++|.|.+|||||||.
T Consensus 13 NLkni~~~ip~~~l~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 13 NLKNITVRIPKNRLVVITGVSGSGKSSLA 41 (916)
T ss_dssp TCCSBCCEEETTSEEEEEESTTSSSHHHH
T ss_pred ccCcceeccCCCcEEEEECCCCCcHHHHH
Confidence 58899999999999999999999999997
No 263
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.91 E-value=0.00057 Score=53.68 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 107 Ge~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.-.++|+|+.|+|||||++.|.+..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3479999999999999999999854
No 264
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.90 E-value=0.00064 Score=57.75 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=26.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCc
Q 027060 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (229)
Q Consensus 108 e~v~IiGpNGsGKSTLlk~L~gll~~~~p~~G 139 (229)
..+.|.||+|+|||||++.|++.+. ...+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~---~~~~ 76 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLF---DTEE 76 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHH---SCGG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHc---CCCc
Confidence 5899999999999999999999987 6555
No 265
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.89 E-value=0.00055 Score=55.71 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
.+.++.|+|++||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456799999999999999999988664
No 266
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.89 E-value=0.00039 Score=57.29 Aligned_cols=27 Identities=22% Similarity=0.450 Sum_probs=23.2
Q ss_pred eecCCcEEEEEcCCCCcHHHHHHHHHH
Q 027060 103 NVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (229)
Q Consensus 103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~g 129 (229)
.+..|+.++|+||+||||||++.++..
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 456799999999999999999887754
No 267
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.89 E-value=0.00065 Score=53.28 Aligned_cols=26 Identities=38% Similarity=0.641 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 107 Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
..+++|.|+.||||||+.+.|+..+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999987653
No 268
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.88 E-value=0.00064 Score=54.86 Aligned_cols=24 Identities=38% Similarity=0.638 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+++|.|+.||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999977554
No 269
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.88 E-value=0.00067 Score=53.36 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+++|.|+.||||||+.+.|...+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998763
No 270
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.87 E-value=0.00053 Score=63.60 Aligned_cols=31 Identities=16% Similarity=0.249 Sum_probs=28.3
Q ss_pred ceeeeecCCcEEEEEcCCCCcHHHHHHHHHH
Q 027060 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (229)
Q Consensus 99 ~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~g 129 (229)
.+.+++.++..+.|+|.+||||||+++.|..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHH
Confidence 4678889999999999999999999999875
No 271
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.85 E-value=0.00072 Score=53.99 Aligned_cols=27 Identities=30% Similarity=0.516 Sum_probs=23.1
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll 131 (229)
....+++|.|+.||||||+.+.|+..+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345689999999999999999998654
No 272
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.85 E-value=0.00058 Score=53.70 Aligned_cols=25 Identities=32% Similarity=0.562 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 108 e~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
.+++|+|+.||||||+.+.|+..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999988654
No 273
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.85 E-value=0.00061 Score=52.79 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 108 e~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
.+++|.|+.||||||+.+.|...+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999988654
No 274
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.84 E-value=0.0007 Score=51.46 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.++|+|+.|+|||||++.+.+-.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998853
No 275
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.83 E-value=0.00083 Score=52.04 Aligned_cols=25 Identities=36% Similarity=0.420 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 108 e~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
++++|.|+.||||||+.+.|+..+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999988664
No 276
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.83 E-value=0.00083 Score=51.81 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+++|.|+.||||||+.+.|...+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999988654
No 277
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.82 E-value=0.00078 Score=50.91 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.++|+|+.|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998853
No 278
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.80 E-value=0.00073 Score=50.96 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.++++|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998753
No 279
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.80 E-value=0.00081 Score=50.83 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 280
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.80 E-value=0.00096 Score=58.12 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=24.8
Q ss_pred CCc--EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 106 VKH--IVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 106 ~Ge--~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
.+. .+.|.||+|+|||||++.+.+.+.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 456 899999999999999999999987
No 281
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.80 E-value=0.00076 Score=54.46 Aligned_cols=24 Identities=38% Similarity=0.573 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+++|+|+.||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999976543
No 282
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.78 E-value=0.00084 Score=50.81 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.++|+|+.|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998743
No 283
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.78 E-value=0.00057 Score=58.12 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 108 e~v~IiGpNGsGKSTLlk~L~gll 131 (229)
-.++|+|++|+|||||++.|+|..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 368999999999999999999853
No 284
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.78 E-value=0.00078 Score=56.53 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
++.++.|+|++||||||+.+.|...+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999998754
No 285
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.78 E-value=0.00098 Score=53.86 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
.+..+.|.||+|+|||||++.++..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 578899999999999999999998775
No 286
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.77 E-value=0.00088 Score=50.99 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.++|+|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998854
No 287
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.77 E-value=0.00089 Score=51.06 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999875
No 288
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.76 E-value=0.0011 Score=58.81 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHH
Q 027060 107 KHIVGLAGPPGAGKSTLAAEVVR 129 (229)
Q Consensus 107 Ge~v~IiGpNGsGKSTLlk~L~g 129 (229)
|..++|+|.+|+|||||++.|++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~ 24 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTK 24 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 45799999999999999999999
No 289
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.76 E-value=0.00076 Score=58.47 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=25.4
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
..+..+.|.||+|+|||||++.+++.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4577899999999999999999999886
No 290
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.75 E-value=0.0009 Score=51.51 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.++|+|+.|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998853
No 291
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.75 E-value=0.00091 Score=51.50 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gl 130 (229)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999874
No 292
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.74 E-value=0.00094 Score=50.66 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 293
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.73 E-value=0.00095 Score=50.69 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.++|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 294
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.73 E-value=0.0011 Score=55.17 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=23.9
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.++-+++|.|+.||||||+.+.|+..+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 467789999999999999999998654
No 295
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.73 E-value=0.0008 Score=51.23 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999873
No 296
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.72 E-value=0.00098 Score=51.25 Aligned_cols=22 Identities=41% Similarity=0.454 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 297
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.72 E-value=0.00089 Score=50.95 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999998743
No 298
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.72 E-value=0.00058 Score=58.62 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=20.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
++-++||.|++||||||+.+.|...+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999988653
No 299
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.71 E-value=0.00075 Score=51.75 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.++|+|+.|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 58999999999999999998743
No 300
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.71 E-value=0.00098 Score=58.44 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=26.7
Q ss_pred eecCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gll 131 (229)
-+++|+++.|.|++|+|||||+..|+...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999998863
No 301
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.71 E-value=0.00092 Score=51.41 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999885
No 302
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.68 E-value=0.0011 Score=51.86 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
.++|+|+.|+|||||++.+.|...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 589999999999999999998643
No 303
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.68 E-value=0.0011 Score=53.87 Aligned_cols=27 Identities=33% Similarity=0.486 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+|.++.|+|+.||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 466899999999999999999988653
No 304
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.67 E-value=0.0011 Score=50.30 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 305
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.67 E-value=0.0011 Score=51.75 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 027060 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 108 e~v~IiGpNGsGKSTLlk~L~gl 130 (229)
-.++|+|+.|+|||||++.|.+-
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999986
No 306
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.67 E-value=0.0013 Score=55.75 Aligned_cols=27 Identities=37% Similarity=0.500 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
++..+.|.||+|+|||||++.|++...
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 567899999999999999999999764
No 307
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.66 E-value=0.0011 Score=52.03 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.++|+|+.|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998843
No 308
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.66 E-value=0.00085 Score=51.21 Aligned_cols=22 Identities=45% Similarity=0.456 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.++|+|+.|+|||||++.+.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4899999999999999999753
No 309
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.66 E-value=0.0012 Score=51.31 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.++|+|+.|+|||||++.|.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998743
No 310
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.66 E-value=0.0011 Score=51.43 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 311
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.65 E-value=0.0012 Score=53.97 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987553
No 312
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.64 E-value=0.00061 Score=51.90 Aligned_cols=22 Identities=45% Similarity=0.462 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.++|+|+.|+|||||++.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 5899999999999999999764
No 313
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.63 E-value=0.00061 Score=53.42 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 027060 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 107 Ge~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.-.++|+|++|+|||||++.+.+.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999999875
No 314
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.63 E-value=0.00084 Score=52.40 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 108 e~v~IiGpNGsGKSTLlk~L~gll 131 (229)
-.++|+|+.|+|||||++.+.+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 479999999999999999998853
No 315
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.62 E-value=0.00084 Score=52.66 Aligned_cols=25 Identities=28% Similarity=0.427 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.--.++|+|+.|+|||||++.|.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999874
No 316
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.61 E-value=0.0013 Score=53.06 Aligned_cols=25 Identities=28% Similarity=0.555 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 107 Ge~v~IiGpNGsGKSTLlk~L~gll 131 (229)
..++||+|..||||||+.+.|...+
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998764
No 317
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.61 E-value=0.0014 Score=49.89 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 027060 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 107 Ge~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.-.++|+|+.|+|||||++.+.+-
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999999773
No 318
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.60 E-value=0.0013 Score=49.82 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
No 319
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.60 E-value=0.0013 Score=50.81 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 108 e~v~IiGpNGsGKSTLlk~L~gll 131 (229)
-.++|+|+.|+|||||++.+.+..
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Confidence 358999999999999999998743
No 320
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.60 E-value=0.0013 Score=50.40 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998854
No 321
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.59 E-value=0.001 Score=55.44 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 108 e~v~IiGpNGsGKSTLlk~L~gll 131 (229)
-.|+|+|.+|+|||||++.|.|.-
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 358999999999999999999854
No 322
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.59 E-value=0.0013 Score=50.55 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 323
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.58 E-value=0.0014 Score=51.32 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.++|+|..|+|||||++.|.+-.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998753
No 324
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.58 E-value=0.0014 Score=53.98 Aligned_cols=32 Identities=22% Similarity=0.490 Sum_probs=26.6
Q ss_pred eeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 101 sl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+-.+.+..++.|+||.||||+|..+.|+..+.
T Consensus 23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp -CCTTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred chhccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 34456778999999999999999999988664
No 325
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.58 E-value=0.0014 Score=51.60 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.++|+|++|+|||||++.+.+-
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999877664
No 326
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.58 E-value=0.0016 Score=51.87 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=23.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 108 e~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
..+.|.||+|+|||||++.|+..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6899999999999999999999886
No 327
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.58 E-value=0.0014 Score=50.50 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.++|+|+.|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998743
No 328
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.57 E-value=0.00081 Score=51.74 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.++|+|+.|+|||||++.|.+.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999764
No 329
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.55 E-value=0.0019 Score=49.79 Aligned_cols=28 Identities=32% Similarity=0.521 Sum_probs=24.1
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
..+..+.|.||.|+|||||++.++..+.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999998774
No 330
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.55 E-value=0.0013 Score=50.58 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 331
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.54 E-value=0.0016 Score=50.27 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.++|+|+.|+|||||++.+.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999885
No 332
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.54 E-value=0.0013 Score=54.57 Aligned_cols=29 Identities=24% Similarity=0.350 Sum_probs=22.8
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 104 i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
..+|.++.|.|+.||||||+++.|...+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999999988775
No 333
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.54 E-value=0.00097 Score=51.89 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.++|+|+.|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47999999999999999998753
No 334
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.53 E-value=0.002 Score=52.91 Aligned_cols=27 Identities=37% Similarity=0.523 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
.+.++.|+|+.||||||+.+.|+..+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999987654
No 335
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.53 E-value=0.0013 Score=58.59 Aligned_cols=23 Identities=43% Similarity=0.631 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.++|+|++|+|||||++.|++..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999974
No 336
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.52 E-value=0.0015 Score=52.80 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
.++|.|+.||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999987553
No 337
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.52 E-value=0.0016 Score=51.56 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998854
No 338
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.52 E-value=0.00058 Score=54.70 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
.+.|.||+|+|||||++.++..+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 799999999999999999998775
No 339
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.52 E-value=0.0014 Score=55.80 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=21.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHH
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVR 129 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~g 129 (229)
...+++|.|+.||||||+.+.|..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999984
No 340
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.52 E-value=0.0015 Score=52.82 Aligned_cols=26 Identities=38% Similarity=0.595 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 107 Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+.+++|+|+.||||||+.+.|+..+.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46799999999999999999988653
No 341
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.51 E-value=0.00095 Score=58.66 Aligned_cols=26 Identities=35% Similarity=0.373 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gll 131 (229)
..-.++|+|+||+|||||++.|+|..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998854
No 342
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.51 E-value=0.0015 Score=50.73 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.++|+|+.|+|||||++.+.+-.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 343
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.51 E-value=0.0016 Score=52.28 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 108 e~v~IiGpNGsGKSTLlk~L~gll 131 (229)
-.++|+|+.|+|||||++.|.+..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999999865
No 344
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.51 E-value=0.0016 Score=50.43 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 345
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.50 E-value=0.0012 Score=56.81 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gl 130 (229)
+++|+|.+|+|||||++.|.|.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
No 346
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.50 E-value=0.0015 Score=51.00 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999885
No 347
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.50 E-value=0.0016 Score=50.90 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.++|+|+.|+|||||++.+.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999999843
No 348
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.50 E-value=0.0016 Score=51.33 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.++|+|+.|+|||||++.+.+-.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998743
No 349
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.49 E-value=0.0012 Score=55.52 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.++|+|..|||||||++.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999963
No 350
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.48 E-value=0.0017 Score=50.85 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.++|+|+.|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998854
No 351
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.48 E-value=0.0017 Score=56.33 Aligned_cols=29 Identities=17% Similarity=0.428 Sum_probs=26.5
Q ss_pred eecCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gll 131 (229)
-+++|+++.|.|++|+|||||+..++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 57899999999999999999999998764
No 352
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.48 E-value=0.002 Score=52.83 Aligned_cols=28 Identities=39% Similarity=0.510 Sum_probs=25.2
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
.+|.++.|.|+.||||||+++.|...+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999998776
No 353
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.47 E-value=0.0018 Score=50.05 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 354
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.46 E-value=0.0017 Score=51.19 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.++|+|+.|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 355
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.46 E-value=0.0018 Score=51.38 Aligned_cols=22 Identities=45% Similarity=0.434 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.++|+|.+|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5999999999999999999874
No 356
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.46 E-value=0.0017 Score=50.97 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 027060 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 108 e~v~IiGpNGsGKSTLlk~L~gl 130 (229)
-.++|+|+.|+|||||++.+.+-
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 36999999999999999999884
No 357
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.44 E-value=0.0014 Score=56.49 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 027060 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 108 e~v~IiGpNGsGKSTLlk~L~gl 130 (229)
-+++|+|..|+|||||++.|.|.
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 47999999999999999999985
No 358
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.44 E-value=0.0022 Score=49.44 Aligned_cols=24 Identities=17% Similarity=0.069 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 027060 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 107 Ge~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.-.++|+|+.|+|||||++.+.+-
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999999874
No 359
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.44 E-value=0.001 Score=57.32 Aligned_cols=35 Identities=20% Similarity=0.434 Sum_probs=26.4
Q ss_pred cceeeeecCC--cEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 98 SALASNVNVK--HIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 98 ~~isl~i~~G--e~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+.+...+..| ..+.|.||+|+|||||++.|++.+.
T Consensus 47 ~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 47 TVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp HHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3444444444 3389999999999999999999864
No 360
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.43 E-value=0.0017 Score=52.20 Aligned_cols=26 Identities=31% Similarity=0.532 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 107 Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
--+++|+|+.|+|||||++.|++...
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 34799999999999999999988754
No 361
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.43 E-value=0.0018 Score=50.14 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999853
No 362
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.43 E-value=0.0022 Score=53.80 Aligned_cols=29 Identities=38% Similarity=0.576 Sum_probs=25.5
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 104 i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+..+.-+.|.||+|+|||||++.|+..+.
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 45677799999999999999999998765
No 363
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.42 E-value=0.0011 Score=51.41 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=21.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHH
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVR 129 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~g 129 (229)
+.-.++|+|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 455799999999999999999874
No 364
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.42 E-value=0.0018 Score=51.42 Aligned_cols=26 Identities=27% Similarity=0.221 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gll 131 (229)
+.-.++|+|+.|+|||||++.+.+-.
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 34469999999999999999999854
No 365
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.42 E-value=0.0018 Score=50.88 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.++|+|+.|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 58999999999999999999865
No 366
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.41 E-value=0.0022 Score=53.54 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+|.++.|.|++||||||+++.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999998775
No 367
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.41 E-value=0.0019 Score=56.81 Aligned_cols=25 Identities=32% Similarity=0.721 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 108 e~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
.+++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4899999999999999999998764
No 368
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.41 E-value=0.00076 Score=65.77 Aligned_cols=33 Identities=30% Similarity=0.455 Sum_probs=29.9
Q ss_pred eeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 100 isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
.++.+.++..+.|.||||+|||||.++|++.+.
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 366778999999999999999999999999886
No 369
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.41 E-value=0.0015 Score=54.36 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 108 e~v~IiGpNGsGKSTLlk~L~gll 131 (229)
-.++|+|+.|+|||||++.|.|..
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 469999999999999999998853
No 370
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.41 E-value=0.0021 Score=50.35 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 371
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.40 E-value=0.0021 Score=50.53 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
No 372
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.38 E-value=0.0021 Score=50.47 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998853
No 373
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.38 E-value=0.0022 Score=50.07 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 108 e~v~IiGpNGsGKSTLlk~L~gll 131 (229)
-.++|+|+.|+|||||++.+.+..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998853
No 374
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.37 E-value=0.0017 Score=54.57 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.++|+|.+|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999853
No 375
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.36 E-value=0.0022 Score=50.30 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 108 e~v~IiGpNGsGKSTLlk~L~gll 131 (229)
-.++|+|+.|+|||||++.+.+-.
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998743
No 376
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.36 E-value=0.0019 Score=54.73 Aligned_cols=23 Identities=43% Similarity=0.645 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 027060 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 108 e~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.++.|+|++||||||+.+.|...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999873
No 377
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.36 E-value=0.0023 Score=52.45 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=25.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+|.++.|-|+.||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999998875
No 378
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.36 E-value=0.002 Score=51.67 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.++|+|+.|+|||||++.+.+-.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999988743
No 379
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.34 E-value=0.0019 Score=55.48 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 107 Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+..+.|.||+|+|||||++.|+..+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 46789999999999999999999885
No 380
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.34 E-value=0.0023 Score=50.41 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 027060 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 107 Ge~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.-.++|+|+.|+|||||++.+.+-
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999999885
No 381
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.34 E-value=0.0023 Score=50.65 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gll 131 (229)
+.-.++|+|+.|+|||||++.+.+-.
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 34568999999999999999998743
No 382
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.33 E-value=0.0024 Score=58.52 Aligned_cols=36 Identities=28% Similarity=0.393 Sum_probs=30.4
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+++.+ +.+.+|+.++|+|++|+|||||++.|.....
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 44444 6777999999999999999999999988765
No 383
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.32 E-value=0.003 Score=54.99 Aligned_cols=33 Identities=27% Similarity=0.339 Sum_probs=29.5
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHH
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~g 129 (229)
.+++..+.+ .|.-++|+|++|+|||||...|.+
T Consensus 134 ~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 134 SLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 677887888 688999999999999999999887
No 384
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.32 E-value=0.0022 Score=50.93 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998843
No 385
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.31 E-value=0.0024 Score=50.71 Aligned_cols=25 Identities=32% Similarity=0.344 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 107 Ge~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.-.++|+|+.|+|||||++.+.+-.
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4468999999999999999998743
No 386
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.31 E-value=0.0018 Score=54.86 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 108 e~v~IiGpNGsGKSTLlk~L~gll 131 (229)
-.++|+|..|||||||++.|+|..
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999854
No 387
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.31 E-value=0.0018 Score=49.95 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 027060 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 108 e~v~IiGpNGsGKSTLlk~L~gl 130 (229)
-.++|+|+.|+|||||++.+.+-
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999874
No 388
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.31 E-value=0.0017 Score=50.60 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gl 130 (229)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4457999999999999999999864
No 389
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.31 E-value=0.002 Score=50.94 Aligned_cols=23 Identities=13% Similarity=0.197 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 390
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.30 E-value=0.0036 Score=51.16 Aligned_cols=34 Identities=29% Similarity=0.380 Sum_probs=27.3
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHH
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.++..-+.+ .|..+.|+||+|+|||||...|+..
T Consensus 24 ~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 24 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 455655555 4788999999999999999888764
No 391
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.29 E-value=0.0025 Score=52.47 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+|.+++|.|..||||||+++.|...++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999998764
No 392
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.29 E-value=0.0011 Score=52.67 Aligned_cols=22 Identities=45% Similarity=0.456 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.++|+|++|+|||||++.+.+.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999764
No 393
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.28 E-value=0.0031 Score=51.91 Aligned_cols=28 Identities=14% Similarity=0.296 Sum_probs=26.1
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
.+|.++.|.|+.||||||+++.|...+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4689999999999999999999999887
No 394
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.27 E-value=0.0027 Score=49.86 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 027060 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 108 e~v~IiGpNGsGKSTLlk~L~gl 130 (229)
-.++|+|+.|+|||||++.+.+-
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 36899999999999999988874
No 395
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.27 E-value=0.0025 Score=49.20 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
.+..+.|.||.|+|||||++.++..+.
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 456789999999999999999998875
No 396
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.26 E-value=0.0024 Score=51.26 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 108 e~v~IiGpNGsGKSTLlk~L~gll 131 (229)
-.++|+|+.|+|||||++.+.+..
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999853
No 397
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.26 E-value=0.0025 Score=50.85 Aligned_cols=32 Identities=16% Similarity=0.196 Sum_probs=23.7
Q ss_pred ceeeeecCCcEEEEEcCCCCcHHHHHHHHHHH
Q 027060 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 99 ~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gl 130 (229)
++.|.-...-.++|+|+.|+|||||++.+.+-
T Consensus 17 ~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 17 NLYFQSMIRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp --CGGGSEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ccccccccCcEEEEECcCCCCHHHHHHHHhcC
Confidence 34333333347999999999999999999884
No 398
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.26 E-value=0.0021 Score=50.27 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=21.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHH
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVR 129 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~g 129 (229)
+.-.++|+|+.|+|||||++.+.+
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345699999999999999999985
No 399
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.24 E-value=0.0028 Score=50.63 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 108 e~v~IiGpNGsGKSTLlk~L~gll 131 (229)
-.++|+|+.|+|||||++.+.+-.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998743
No 400
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.23 E-value=0.002 Score=54.95 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 027060 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 108 e~v~IiGpNGsGKSTLlk~L~gl 130 (229)
-.++|+|..|+|||||++.|+|.
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTS
T ss_pred CeEEEEcCCCCCHHHHHHHHHCC
Confidence 37999999999999999999985
No 401
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.23 E-value=0.0031 Score=51.37 Aligned_cols=24 Identities=42% Similarity=0.707 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
++.|+||+||||+|..+.|+..+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 688999999999999999988664
No 402
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.23 E-value=0.0036 Score=51.56 Aligned_cols=28 Identities=39% Similarity=0.557 Sum_probs=24.0
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
....-+.|.||+|+|||||++.|+..+.
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3455688999999999999999999765
No 403
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.21 E-value=0.002 Score=55.78 Aligned_cols=37 Identities=16% Similarity=0.317 Sum_probs=31.6
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
.|+.+.--+.+|+++.|.|++|+|||||+..++....
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a 93 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS 93 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 5677776689999999999999999999988876543
No 404
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.20 E-value=0.001 Score=55.49 Aligned_cols=32 Identities=38% Similarity=0.593 Sum_probs=25.5
Q ss_pred ceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 99 ~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
++.+....| +.|.||+|+|||||++.|+....
T Consensus 38 ~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 38 NLGAKIPKG--VLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp HHSCCCCSC--CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred HCCCCCCce--EEEECCCCCcHHHHHHHHHHHhC
Confidence 344444555 78999999999999999999764
No 405
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.20 E-value=0.001 Score=53.50 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 107 Ge~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.-.++|+|..|+|||||++.|.+..
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 4479999999999999999998853
No 406
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.20 E-value=0.0024 Score=57.42 Aligned_cols=30 Identities=33% Similarity=0.313 Sum_probs=24.8
Q ss_pred eeecCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 102 l~i~~Ge~v~IiGpNGsGKSTLlk~L~gll 131 (229)
+.-....++.|+|++||||||+.+.|+..+
T Consensus 253 ~~~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 253 LLSPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred cCCCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 344567899999999999999999987543
No 407
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.20 E-value=0.0021 Score=51.13 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999753
No 408
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.19 E-value=0.0019 Score=50.22 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 027060 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 107 Ge~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.-.++|+|+.|+|||||++.+.+-
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999874
No 409
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.19 E-value=0.0036 Score=51.78 Aligned_cols=28 Identities=18% Similarity=0.293 Sum_probs=25.7
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
.+|.++.|.|+.||||||+.+.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4789999999999999999999998776
No 410
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.18 E-value=0.003 Score=55.16 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 108 e~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
.++.|+||+|||||||.+.|+..+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999998654
No 411
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.17 E-value=0.0029 Score=50.22 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999884
No 412
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.16 E-value=0.0017 Score=54.75 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.++|+|.+|+|||||++.|.+.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999998663
No 413
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.14 E-value=0.002 Score=50.57 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 027060 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 107 Ge~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.-.++|+|..|+|||||++.+.+-
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999874
No 414
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.13 E-value=0.0029 Score=57.31 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 107 Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+..+.|.||+|+|||||+++|++.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999999874
No 415
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.13 E-value=0.0026 Score=50.92 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 416
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.13 E-value=0.0033 Score=49.33 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 417
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.13 E-value=0.0015 Score=51.21 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 107 Ge~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.-.++|+|+.|+|||||++.+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998765
No 418
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.13 E-value=0.0031 Score=50.85 Aligned_cols=26 Identities=19% Similarity=0.410 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 107 Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
--+++|+|..|+|||||++.++....
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 35789999999999999999988654
No 419
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.13 E-value=0.0019 Score=50.05 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=9.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998764
No 420
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.12 E-value=0.0023 Score=52.03 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 027060 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 107 Ge~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.-.++|+|+.|+|||||++.+.+.
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346999999999999999999874
No 421
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.12 E-value=0.002 Score=50.86 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.++|+|+.|+|||||++.+.+.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999764
No 422
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.11 E-value=0.0031 Score=54.30 Aligned_cols=28 Identities=18% Similarity=0.363 Sum_probs=25.5
Q ss_pred eecCCcEEEEEcCCCCcHHHHHHHHHHH
Q 027060 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gl 130 (229)
-+++|+++.|.|++|+|||||+..++..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999988864
No 423
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.08 E-value=0.0026 Score=50.27 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 108 e~v~IiGpNGsGKSTLlk~L~gll 131 (229)
-.++|+|..|+|||||++.+.+..
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 469999999999999999888743
No 424
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.08 E-value=0.0028 Score=49.99 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=20.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gl 130 (229)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3446999999999999999998754
No 425
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.05 E-value=0.0044 Score=50.47 Aligned_cols=26 Identities=35% Similarity=0.477 Sum_probs=22.9
Q ss_pred eecCCcEEEEEcCCCCcHHHHHHHHH
Q 027060 103 NVNVKHIVGLAGPPGAGKSTLAAEVV 128 (229)
Q Consensus 103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~ 128 (229)
=+++|+++.|.|++|+|||||+--++
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 37899999999999999999986554
No 426
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.04 E-value=0.0027 Score=51.03 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 427
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.04 E-value=0.0038 Score=49.69 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 5899999999999999999874
No 428
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.03 E-value=0.0039 Score=54.85 Aligned_cols=27 Identities=26% Similarity=0.491 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
++.++.|+||.|||||||...|+..+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 456899999999999999999987553
No 429
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.03 E-value=0.0028 Score=57.49 Aligned_cols=31 Identities=39% Similarity=0.564 Sum_probs=26.0
Q ss_pred eeecCC--cEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 102 SNVNVK--HIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 102 l~i~~G--e~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
|.+.++ .+++|+|++|+||||++..|++.+.
T Consensus 92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 444434 5899999999999999999999876
No 430
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.02 E-value=0.0027 Score=53.52 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 108 e~v~IiGpNGsGKSTLlk~L~gll 131 (229)
-.++|+|..|+|||||++.|.|..
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCC
Confidence 479999999999999999999853
No 431
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.01 E-value=0.0043 Score=54.13 Aligned_cols=26 Identities=27% Similarity=0.661 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 107 Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+.+++|+||+|||||||...|+..+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 45899999999999999999987543
No 432
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.98 E-value=0.0041 Score=49.60 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 027060 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 107 Ge~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.-.++|+|+.|+|||||++.+.+-
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 346899999999999999998863
No 433
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.97 E-value=0.0033 Score=52.58 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 108 e~v~IiGpNGsGKSTLlk~L~gll 131 (229)
-.++|+|..|+|||||++.|.|..
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999999854
No 434
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.95 E-value=0.0021 Score=53.68 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=24.2
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
.++.+|+|.|+.||||||+.+.|...+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4678999999999999999999987653
No 435
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.95 E-value=0.0047 Score=49.88 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.++|+|+.|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998853
No 436
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.92 E-value=0.0036 Score=50.91 Aligned_cols=22 Identities=45% Similarity=0.434 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.++|+|.+|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5999999999999999999863
No 437
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.92 E-value=0.0049 Score=49.66 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 027060 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 107 Ge~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.-.++|+|+.|+|||||++.+.+-
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 346999999999999999999874
No 438
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.91 E-value=0.0056 Score=49.74 Aligned_cols=26 Identities=35% Similarity=0.667 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 107 Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
|.+|+|=|.-||||||+++.|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999998875
No 439
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.89 E-value=0.0037 Score=52.50 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.++++|..|+|||||++.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
No 440
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.88 E-value=0.0037 Score=52.74 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 108 e~v~IiGpNGsGKSTLlk~L~gll 131 (229)
..++|+|.+|+|||||++.|.|..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~ 123 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKR 123 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred hheEEeCCCCCCHHHHHHHHhccc
Confidence 589999999999999999999854
No 441
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.85 E-value=0.0039 Score=54.78 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=32.0
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
.|+.+.--+.+|+++.|.|++|+|||||+..|+....
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4666666789999999999999999999999888765
No 442
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.85 E-value=0.005 Score=49.01 Aligned_cols=23 Identities=13% Similarity=0.056 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 027060 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 108 e~v~IiGpNGsGKSTLlk~L~gl 130 (229)
-.++|+|+.|+|||||++.+.+-
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999874
No 443
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=95.81 E-value=0.0019 Score=50.93 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=4.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 027060 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 108 e~v~IiGpNGsGKSTLlk~L~gl 130 (229)
-.++|+|+.|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999998875
No 444
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.81 E-value=0.0067 Score=53.58 Aligned_cols=29 Identities=31% Similarity=0.558 Sum_probs=26.2
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 104 i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+++|.++.|.|++|+|||||...++....
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999988887654
No 445
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.81 E-value=0.0063 Score=53.38 Aligned_cols=27 Identities=37% Similarity=0.537 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
..-+++|+|+.|+|||||++.|++.+.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999998764
No 446
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.80 E-value=0.0059 Score=55.57 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
++.+++++|++|+||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999999887
No 447
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.78 E-value=0.0068 Score=51.28 Aligned_cols=27 Identities=26% Similarity=0.492 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
.+..+.|.||+|+|||||.+.|+..+.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 456799999999999999999998774
No 448
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.78 E-value=0.006 Score=48.07 Aligned_cols=24 Identities=33% Similarity=0.632 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
.+.|.||.|+|||||++.++..+.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 389999999999999999988753
No 449
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=95.75 E-value=0.0017 Score=52.00 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.++|+|+.|+|||||++.|.+-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998853
No 450
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.75 E-value=0.007 Score=52.68 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 107 Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
..+++|+||+|||||||...|+..+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 45799999999999999999987653
No 451
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.72 E-value=0.0052 Score=53.20 Aligned_cols=28 Identities=32% Similarity=0.426 Sum_probs=24.8
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
..+..+.|.||+|+|||||++.+...+.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999998774
No 452
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.71 E-value=0.0044 Score=60.17 Aligned_cols=30 Identities=23% Similarity=0.261 Sum_probs=26.0
Q ss_pred eecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
.+..|+.+.|+||+||||||++.++.+...
T Consensus 105 ~l~~~~~vii~gpTGSGKTtllp~ll~~~~ 134 (773)
T 2xau_A 105 LYQNNQIMVFVGETGSGKTTQIPQFVLFDE 134 (773)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHhCCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 356789999999999999999999977655
No 453
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.71 E-value=0.0059 Score=48.14 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=20.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHH
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVR 129 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~g 129 (229)
+.-.++|+|+.|+|||||++.+.+
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 445699999999999999999865
No 454
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.70 E-value=0.0031 Score=57.25 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 027060 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 108 e~v~IiGpNGsGKSTLlk~L~gl 130 (229)
-.++|+|.+|+|||||++.|+|.
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 47999999999999999999884
No 455
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.67 E-value=0.0071 Score=48.15 Aligned_cols=26 Identities=23% Similarity=0.162 Sum_probs=21.2
Q ss_pred CCcEEEEEcCCCCcHHHHH-HHHHHHh
Q 027060 106 VKHIVGLAGPPGAGKSTLA-AEVVRRI 131 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLl-k~L~gll 131 (229)
+|.++.|.|+.|+||||++ +++....
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4889999999999999997 5555443
No 456
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.66 E-value=0.0078 Score=50.06 Aligned_cols=26 Identities=35% Similarity=0.459 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 107 Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
...+||+|+.||||||+.+.|+..+.
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999987654
No 457
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.65 E-value=0.0083 Score=51.17 Aligned_cols=27 Identities=37% Similarity=0.532 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
....+.|.||+|+|||+|.+.|+..+.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345678889999999999999999775
No 458
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.58 E-value=0.009 Score=51.66 Aligned_cols=27 Identities=41% Similarity=0.491 Sum_probs=24.0
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.+..-+.|.||.|+|||||++.++..+
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 355678999999999999999999976
No 459
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.58 E-value=0.0082 Score=45.52 Aligned_cols=28 Identities=29% Similarity=0.243 Sum_probs=23.8
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
..+.-+.|.||+|+|||++.+.|.....
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 3456689999999999999999988654
No 460
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.57 E-value=0.0045 Score=48.27 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=20.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHH
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVR 129 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~g 129 (229)
+.-.++|+|+.|+|||||++.+.+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 445699999999999999999854
No 461
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.55 E-value=0.011 Score=47.28 Aligned_cols=32 Identities=25% Similarity=0.163 Sum_probs=25.0
Q ss_pred ccceeeeecCCcEEEEEcCCCCcHHHHHHHHHH
Q 027060 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (229)
Q Consensus 97 l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~g 129 (229)
++..-+.+ .|.-+.|.|++|+|||||...|..
T Consensus 7 lHas~v~v-~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 7 WHANFLVI-DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 44444444 488899999999999999987765
No 462
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=95.48 E-value=0.0057 Score=49.15 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHH-HHHHh
Q 027060 109 IVGLAGPPGAGKSTLAAE-VVRRI 131 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~-L~gll 131 (229)
.++|+|..|+|||||++. +.|..
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 589999999999999998 66653
No 463
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.47 E-value=0.0091 Score=53.74 Aligned_cols=25 Identities=32% Similarity=0.682 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 108 e~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
.+++|+||+|||||||.+.|+..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 4789999999999999999987664
No 464
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.46 E-value=0.0094 Score=50.12 Aligned_cols=26 Identities=27% Similarity=0.520 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 107 Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+.-+.|.||+|+|||||++.|+..+.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45688999999999999999999875
No 465
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.45 E-value=0.0062 Score=55.07 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=31.7
Q ss_pred cccceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 96 ~l~~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
.|+.+.--+.+|+++.|.|++|+|||||+..|+....
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4666665689999999999999999999998888664
No 466
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.43 E-value=0.01 Score=51.46 Aligned_cols=27 Identities=30% Similarity=0.564 Sum_probs=24.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+|..+.|.||.|+|||||++.++..+.
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 467899999999999999999999886
No 467
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.39 E-value=0.0095 Score=48.92 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=25.6
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 104 i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+++.-.+.|.||+|+||||+..+|+..+.
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 66666799999999999999999999875
No 468
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=95.34 E-value=0.0086 Score=51.03 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.+-.++|+|.+|+|||||++.|.|..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCc
Confidence 34479999999999999999999854
No 469
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.33 E-value=0.01 Score=51.92 Aligned_cols=27 Identities=37% Similarity=0.575 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
++.-+.|.||+|+||||+.+.|+..+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 355689999999999999999998764
No 470
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=95.33 E-value=0.007 Score=54.20 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.++|+|.+++|||||++.|++.-
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999998753
No 471
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.32 E-value=0.012 Score=53.02 Aligned_cols=34 Identities=26% Similarity=0.384 Sum_probs=29.7
Q ss_pred ceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 99 ~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
|.=+.|.+|+..+|+|+.|+|||||+..|+....
T Consensus 167 D~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~ 200 (427)
T 3l0o_A 167 DLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIA 200 (427)
T ss_dssp HHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred hhcccccCCceEEEecCCCCChhHHHHHHHHHHh
Confidence 4557789999999999999999999998888653
No 472
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.28 E-value=0.013 Score=50.96 Aligned_cols=27 Identities=26% Similarity=0.349 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
.+..+.|.||.|+|||||++.+...+.
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~~ 70 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEIE 70 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 356899999999999999999998763
No 473
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=95.25 E-value=0.007 Score=55.32 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=23.7
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll 131 (229)
..|-.++|+|+.|+|||||++.|++..
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 356679999999999999999999964
No 474
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.25 E-value=0.014 Score=51.16 Aligned_cols=28 Identities=25% Similarity=0.436 Sum_probs=24.4
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
....-+.|.||+|+|||||++.|+..+.
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 3566799999999999999999998764
No 475
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=95.24 E-value=0.0082 Score=51.54 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 027060 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 107 Ge~v~IiGpNGsGKSTLlk~L~gl 130 (229)
+-.++|+|+.|+|||||++.+.+-
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999998764
No 476
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.24 E-value=0.0068 Score=55.08 Aligned_cols=33 Identities=42% Similarity=0.702 Sum_probs=26.3
Q ss_pred eeeeecCCcE--EEEEcCCCCcHHHHHHHHHHHhc
Q 027060 100 LASNVNVKHI--VGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 100 isl~i~~Ge~--v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+.-.|..|.+ +.|.||+|+|||||.++|+....
T Consensus 41 L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 41 LPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp HHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3344444554 89999999999999999999876
No 477
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=94.23 E-value=0.0032 Score=49.94 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 027060 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 107 Ge~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.-.++|+|+.|+|||||++.+.+-
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 346999999999999999888753
No 478
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.22 E-value=0.012 Score=49.16 Aligned_cols=27 Identities=41% Similarity=0.553 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
....+.|.||.|+|||||.+.|+....
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 445688999999999999999998764
No 479
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.22 E-value=0.015 Score=50.04 Aligned_cols=27 Identities=44% Similarity=0.567 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+..-+.|.||+|+|||+|++.|+....
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 455689999999999999999998765
No 480
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.08 E-value=0.016 Score=49.79 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 107 Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+.-+.|.||.|+|||+|+++|+..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999988653
No 481
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=95.07 E-value=0.0068 Score=54.65 Aligned_cols=22 Identities=32% Similarity=0.628 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.++|+|.+|+|||||++.|+|.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999884
No 482
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.06 E-value=0.012 Score=51.53 Aligned_cols=28 Identities=18% Similarity=0.232 Sum_probs=24.6
Q ss_pred eecCCcEEEEEcCCCCcHHHHHHHHHHH
Q 027060 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gl 130 (229)
-+.+|.++.|.||.|+|||||...++..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 5677888999999999999999998764
No 483
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.01 E-value=0.019 Score=52.06 Aligned_cols=30 Identities=33% Similarity=0.527 Sum_probs=25.3
Q ss_pred eecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
-+.+..=+.|.||+|+|||+|.+.|++.+.
T Consensus 202 g~~~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 344555689999999999999999999875
No 484
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=94.99 E-value=0.013 Score=51.72 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gl 130 (229)
++..++++|.+|+|||||++.|.+.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 4668999999999999999999997
No 485
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.97 E-value=0.015 Score=50.88 Aligned_cols=27 Identities=44% Similarity=0.567 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+..-+.|.||.|+|||||.+.|+..+.
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 445588999999999999999999775
No 486
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.95 E-value=0.016 Score=54.93 Aligned_cols=27 Identities=30% Similarity=0.345 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
+|.++.|+|.+||||||+.+.|...+.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 577899999999999999999998773
No 487
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.95 E-value=0.015 Score=49.86 Aligned_cols=24 Identities=33% Similarity=0.567 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
.+.|.||+|+|||||++.|+....
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECcCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988764
No 488
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.92 E-value=0.02 Score=51.93 Aligned_cols=30 Identities=30% Similarity=0.498 Sum_probs=25.9
Q ss_pred eecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
-+++..-+.|.||+|+|||+|.++|++...
T Consensus 211 g~~~prGvLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 211 GIRAPKGALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence 455666789999999999999999999875
No 489
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.90 E-value=0.016 Score=51.33 Aligned_cols=30 Identities=30% Similarity=0.499 Sum_probs=25.7
Q ss_pred eecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
-+++|.++.|.|++|+|||||+..++....
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~ 99 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQ 99 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHH
Confidence 467999999999999999999987766543
No 490
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.89 E-value=0.021 Score=51.90 Aligned_cols=30 Identities=40% Similarity=0.566 Sum_probs=25.9
Q ss_pred eecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 103 ~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
-+.+..=+.|.||+|+|||+|.++|++...
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 355666789999999999999999999875
No 491
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.89 E-value=0.016 Score=50.73 Aligned_cols=26 Identities=31% Similarity=0.631 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 107 Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
...+.|.||+|+|||||.+.|+..+.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 45688999999999999999998774
No 492
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.88 E-value=0.017 Score=53.45 Aligned_cols=28 Identities=18% Similarity=0.377 Sum_probs=23.3
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
.+..+++|+|++|+|||||+..|+..+.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456899999999999999999997765
No 493
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.86 E-value=0.016 Score=52.71 Aligned_cols=24 Identities=29% Similarity=0.563 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 109 ~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
-+.|.||+|+||||+.+.|+..+.
T Consensus 52 ~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 52 NILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEEcCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999999886
No 494
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=94.86 E-value=0.0073 Score=52.87 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 027060 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 108 e~v~IiGpNGsGKSTLlk~L~gl 130 (229)
-.++|+|..|+|||||++.|.|.
T Consensus 32 ~~I~vvG~~~~GKSSLln~L~g~ 54 (353)
T 2x2e_A 32 PQIAVVGGQSAGKSSVLENFVGR 54 (353)
T ss_dssp CEEEEECBTTSSHHHHHHTTTTS
T ss_pred CeEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999985
No 495
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.86 E-value=0.019 Score=52.26 Aligned_cols=27 Identities=22% Similarity=0.517 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
...++.++|.+||||||+.+.|+..+.
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999987654
No 496
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.85 E-value=0.019 Score=53.92 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
.|.++.|.|.+||||||+.+.|...+.
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 467899999999999999999998775
No 497
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.82 E-value=0.013 Score=50.39 Aligned_cols=34 Identities=18% Similarity=0.281 Sum_probs=27.1
Q ss_pred ceeeeecCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 99 ~isl~i~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
.+...+..|.-+.|.||+|+|||+|++.|+..+.
T Consensus 38 ~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 38 RLLIGICTGGHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp HHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 3333344567899999999999999999999765
No 498
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=94.82 E-value=0.012 Score=54.98 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gll 131 (229)
.--+|+|+|..|+|||||++.|.|.-
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 34589999999999999999999853
No 499
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=94.81 E-value=0.02 Score=48.76 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 027060 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (229)
Q Consensus 106 ~Ge~v~IiGpNGsGKSTLlk~L~gl 130 (229)
.|..+.|.|+.|+|||||++.+...
T Consensus 30 ~~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 30 NYPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEECCCcCCHHHHHHHHHHH
Confidence 3689999999999999999998764
No 500
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.76 E-value=0.018 Score=53.36 Aligned_cols=28 Identities=7% Similarity=0.084 Sum_probs=26.0
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 027060 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (229)
Q Consensus 105 ~~Ge~v~IiGpNGsGKSTLlk~L~gll~ 132 (229)
..|.++.|+|.+||||||+-+.|+..+.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999987
Done!