BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027062
(229 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QDL|B Chain B, The Crystal Structure Of Anthranilate Synthase From
Sulfolobus Solfataricus
Length = 195
Score = 153 bits (386), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 85/195 (43%), Positives = 120/195 (61%), Gaps = 7/195 (3%)
Query: 28 IVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP---QDS 84
++IDNYDSF YN+ Q +GELG + V RNDE++++ ++R +P ++ISPGPG P +D
Sbjct: 5 LIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKREDI 64
Query: 85 GISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLL 144
G+SL + LG P+ GVC+G Q IG AFG KI R V HGK S + L
Sbjct: 65 GVSLDVIKYLGKRTPILGVCLGHQAIGYAFGAKI-RRARKVFHGKISNIILVNNSPLSLY 123
Query: 145 AGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESII 204
G++ F A RYHSLV+++ P ++A ED IMA H++Y + GVQFHPES+
Sbjct: 124 YGIAKEFKATRYHSLVVDEVHRPLIVDAISA--EDNEIMAIHHEEYP-IYGVQFHPESVG 180
Query: 205 TTEGKTIVRNFIKMI 219
T+ G I+ NF+ +
Sbjct: 181 TSLGYKILYNFLNRV 195
>pdb|1I7Q|B Chain B, Anthranilate Synthase From S. Marcescens
pdb|1I7Q|D Chain D, Anthranilate Synthase From S. Marcescens
pdb|1I7S|B Chain B, Anthranilate Synthase From Serratia Marcescens In Complex
With Its End Product Inhibitor L-Tryptophan
pdb|1I7S|D Chain D, Anthranilate Synthase From Serratia Marcescens In Complex
With Its End Product Inhibitor L-Tryptophan
Length = 193
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 119/199 (59%), Gaps = 12/199 (6%)
Query: 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRND---ELTVEELKRKNPRGVLISPGPGAPQD 83
I+++DN DSFTYNL + G+ +YRN E+ +E L+ +++SPGPG P +
Sbjct: 4 ILLLDNVDSFTYNLVDQLRASGHQVVIYRNQIGAEVIIERLQHMEQPVLMLSPGPGTPSE 63
Query: 84 SGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGL 143
+G + + L +P+ G+C+G Q I EA+GG++ ++ ++HGK+S + +D GE G+
Sbjct: 64 AGCMPELLQRLRGQLPIIGICLGHQAIVEAYGGQVGQAG-EILHGKASAIAHD--GE-GM 119
Query: 144 LAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESI 203
AG++NP RYHSLV + P+D L V A + ++MA R + + + G QFHPESI
Sbjct: 120 FAGMANPLPVARYHSLV--GSNIPAD-LTVNARFGE-MVMAVRDDR-RRVCGFQFHPESI 174
Query: 204 ITTEGKTIVRNFIKMIVRK 222
+TT G ++ + + K
Sbjct: 175 LTTHGARLLEQTLAWALAK 193
>pdb|1I1Q|B Chain B, Structure Of The Cooperative Allosteric Anthranilate
Synthase From Salmonella Typhimurium
Length = 192
Score = 117 bits (294), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 119/200 (59%), Gaps = 14/200 (7%)
Query: 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRND---ELTVEELKR-KNPRGVLISPGPGAPQ 82
I+++DN DSFT+NL + G++ +YRN + ++ L KNP +++SPGPG P
Sbjct: 3 ILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATMKNPV-LMLSPGPGVPS 61
Query: 83 DSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDG 142
++G + + L +P+ G+C+G Q I EA+GG + ++ ++HGK++ + +D +
Sbjct: 62 EAGCMPELLTRLRGKLPIIGICLGHQAIVEAYGGYVGQAG-EILHGKATSIEHDGQ---A 117
Query: 143 LLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPES 202
+ AGL+NP RYHSLV + P+ L + A +G++MA RH + + G QFHPES
Sbjct: 118 MFAGLANPLPVARYHSLV--GSNVPA-GLTINAHF-NGMVMAVRHDADR-VCGFQFHPES 172
Query: 203 IITTEGKTIVRNFIKMIVRK 222
I+TT+G ++ + +K
Sbjct: 173 ILTTQGARLLEQTLAWAQQK 192
>pdb|1WL8|A Chain A, Crystal Structure Of Ph1346 Protein From Pyrococcus
Horikoshii
Length = 189
Score = 73.9 bits (180), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 102/194 (52%), Gaps = 13/194 (6%)
Query: 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
I+++DN + + + + + LG ++ N +EE+K NP+G++ S GP +++G
Sbjct: 3 IVIMDNGGQYVHRIWRTLRYLGVETKIIPNT-TPLEEIKAMNPKGIIFSGGPSL-ENTG- 59
Query: 87 SLQTVLELGP--TVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLL 144
+ + VLE VP+ G+C+G Q I + FGGK+ R + SLV + E +
Sbjct: 60 NCEKVLEHYDEFNVPILGICLGHQLIAKFFGGKVGRGE----KAEYSLVEIEIIDEXEIF 115
Query: 145 AGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESII 204
GL P + S + E + P ++ A +E I A +H++ + GVQFHPE
Sbjct: 116 KGL--PKRLKVWESHMDEVKELPPK-FKILARSETXPIEAMKHEELP-IYGVQFHPEVAH 171
Query: 205 TTEGKTIVRNFIKM 218
T +G+ I+RNF K+
Sbjct: 172 TEKGEEILRNFAKL 185
>pdb|2D7J|A Chain A, Crystal Structure Analysis Of Glutamine Amidotransferase
From Pyrococcus Horikoshii Ot3
Length = 209
Score = 73.6 bits (179), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 103/194 (53%), Gaps = 13/194 (6%)
Query: 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
I+++DN + + + + + LG ++ N +EE+K NP+G++ S GP +++G
Sbjct: 23 IVIMDNGGQYVHRIWRTLRYLGVETKIIPNT-TPLEEIKAMNPKGIIFSGGPSL-ENTG- 79
Query: 87 SLQTVLELGP--TVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLL 144
+ + VLE VP+ G+C+G Q I + FGGK+ R + SLV + ED +
Sbjct: 80 NCEKVLEHYDEFNVPILGICLGHQLIAKFFGGKVGRGE----KAEYSLVEIEIIDEDEIF 135
Query: 145 AGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESII 204
GL P + S + E + P ++ A +E I A +H++ + GVQFHPE
Sbjct: 136 KGL--PKRLKVWESHMDEVKELPPK-FKILARSETCPIEAMKHEELP-IYGVQFHPEVAH 191
Query: 205 TTEGKTIVRNFIKM 218
T +G+ I+RNF K+
Sbjct: 192 TEKGEEILRNFAKL 205
>pdb|1GPM|A Chain A, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|B Chain B, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|C Chain C, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|D Chain D, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
Length = 525
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 108/212 (50%), Gaps = 21/212 (9%)
Query: 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP- 81
+K+ I+++D +T + + + ELG + E++ D +T +++ NP G+++S GP +
Sbjct: 6 HKHRILILDFGSQYTQLVARRVRELGVYCELWAWD-VTEAQIRDFNPSGIILSGGPESTT 64
Query: 82 -QDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGE 140
++S + Q V E G VP+FGVC G+Q + GG + S + + +
Sbjct: 65 EENSPRAPQYVFEAG--VPVFGVCYGMQTMAMQLGGHVEASN----EREFGYAQVEVVND 118
Query: 141 DGLLAGLSNPFTA-GR-----YHSLVIEKESFPSDALEVTAWTEDG--LIMAARHKKYKH 192
L+ G+ + TA G+ + S + + PSD + V + TE IMA K++
Sbjct: 119 SALVRGIEDALTADGKPLLDVWMSHGDKVTAIPSDFITVAS-TESCPFAIMANEEKRF-- 175
Query: 193 LQGVQFHPESIITTEGKTIVRNFIKMIVRKEA 224
GVQFHPE T +G ++ F++ I + EA
Sbjct: 176 -YGVQFHPEVTHTRQGMRMLERFVRDICQCEA 206
>pdb|2YWB|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
pdb|2YWB|B Chain B, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
pdb|2YWB|C Chain C, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
pdb|2YWB|D Chain D, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
Length = 503
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 86/192 (44%), Gaps = 10/192 (5%)
Query: 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
++V+D +T + + + EL F + + +EE+ + P+ +++S GP + D
Sbjct: 2 VLVLDFGSQYTRLIARRLREL-RAFSLILPGDAPLEEVLKHRPQALILSGGPRSVFDPDA 60
Query: 87 SLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAG 146
+PL G+C G+Q + + GG++ R+ +GK+ L + E L G
Sbjct: 61 PRPDPRLFSSGLPLLGICYGMQLLAQELGGRVERAGRA-EYGKALLTRH----EGPLFRG 115
Query: 147 LSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITT 206
L H + + P V A TE+ + AA GVQFHPE T
Sbjct: 116 LEGEVQVWMSHQDAV---TAPPPGWRVVAETEENPV-AAIASPDGRAYGVQFHPEVAHTP 171
Query: 207 EGKTIVRNFIKM 218
+G I+ NF+++
Sbjct: 172 KGMQILENFLEL 183
>pdb|2YWC|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|B Chain B, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|C Chain C, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|D Chain D, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
Length = 503
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 85/192 (44%), Gaps = 10/192 (5%)
Query: 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
++V+D +T + + + EL F + + +EE+ + P+ +++S GP + D
Sbjct: 2 VLVLDFGSQYTRLIARRLREL-RAFSLILPGDAPLEEVLKHRPQALILSGGPRSVFDPDA 60
Query: 87 SLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAG 146
+PL G+C G Q + + GG++ R+ +GK+ L + E L G
Sbjct: 61 PRPDPRLFSSGLPLLGICYGXQLLAQELGGRVERAGRA-EYGKALLTRH----EGPLFRG 115
Query: 147 LSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITT 206
L H + + P V A TE+ + A + GVQFHPE T
Sbjct: 116 LEGEVQVWXSHQDAV---TAPPPGWRVVAETEENPVAAIASPDGRAY-GVQFHPEVAHTP 171
Query: 207 EGKTIVRNFIKM 218
+G I+ NF+++
Sbjct: 172 KGXQILENFLEL 183
>pdb|1M6V|B Chain B, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|D Chain D, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|F Chain F, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|H Chain H, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
Length = 382
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 17/166 (10%)
Query: 58 ELTVEELKRKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAF 114
+ + E++ + NP G+ +S GPG AP D I+ +Q LE +P+FG+C+G Q + A
Sbjct: 222 QTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLET--DIPVFGICLGHQLLALAS 279
Query: 115 GGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVT 174
G K V+ G HG + V EK + A + H +++ + P++ L VT
Sbjct: 280 GAKTVKMKFG-HHGGNHPVKDVEKNVVMITA---------QNHGFAVDEATLPAN-LRVT 328
Query: 175 AWTEDGLIMAARHKKYKHLQGVQFHPE-SIITTEGKTIVRNFIKMI 219
+ + H+ K Q HPE S + + +FI++I
Sbjct: 329 HKSLFDGTLQGIHRTDKPAFSFQGHPEASPFPHDAAPLFDHFIELI 374
>pdb|1T36|B Chain B, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|D Chain D, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|F Chain F, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|H Chain H, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
Length = 382
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 71/148 (47%), Gaps = 16/148 (10%)
Query: 58 ELTVEELKRKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAF 114
+ + E++ + NP G+ +S GPG AP D I+ +Q LE +P+FG+C+G Q + A
Sbjct: 222 QTSAEDVLKMNPDGIFLSNGPGDPAPDDYAITAIQKFLET--DIPVFGICLGHQLLALAS 279
Query: 115 GGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVT 174
G K V+ G HG + V EK + A + H +++ + P++ L VT
Sbjct: 280 GAKTVKMKFG-HHGGNHPVKDVEKNVVMITA---------QNHGFAVDEATLPAN-LRVT 328
Query: 175 AWTEDGLIMAARHKKYKHLQGVQFHPES 202
+ + H+ K Q HPE+
Sbjct: 329 HKSLFDGTLQGIHRTDKPAFSFQGHPEA 356
>pdb|2VPI|A Chain A, Human Gmp Synthetase - Glutaminase Domain
pdb|2VPI|B Chain B, Human Gmp Synthetase - Glutaminase Domain
Length = 218
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 19/158 (12%)
Query: 64 LKRKNPRGVLISPGPGA--PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRS 121
+K + R ++IS GP + +D+ + +G P+ G+C G+Q + + FGG + +
Sbjct: 63 IKEQGFRAIIISGGPNSVYAEDAPWFDPAIFTIGK--PVLGICYGMQMMNKVFGGTVHKK 120
Query: 122 PL---GVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTE 178
+ GV + + D L GL H ++K +D +V A
Sbjct: 121 SVREDGVFN-----ISVDNTCS--LFRGLQKEEVVLLTHGDSVDK---VADGFKVVA--R 168
Query: 179 DGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI 216
G I+A + K L G QFHPE +T GK I++NF+
Sbjct: 169 SGNIVAGIANESKKLYGAQFHPEVGLTENGKVILKNFL 206
>pdb|1JDB|C Chain C, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|F Chain F, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|I Chain I, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|L Chain L, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1BXR|B Chain B, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|D Chain D, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|F Chain F, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|H Chain H, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1CE8|B Chain B, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|D Chain D, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|F Chain F, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|H Chain H, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
Length = 382
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 71/148 (47%), Gaps = 16/148 (10%)
Query: 58 ELTVEELKRKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAF 114
+ + E++ + NP G+ +S GPG AP D I+ +Q LE +P+FG+C+G Q + A
Sbjct: 222 QTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLET--DIPVFGICLGHQLLALAS 279
Query: 115 GGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVT 174
G K V+ G HG + V EK + A + H +++ + P++ L VT
Sbjct: 280 GAKTVKMKFG-HHGGNHPVKDVEKNVVMITA---------QNHGFAVDEATLPAN-LRVT 328
Query: 175 AWTEDGLIMAARHKKYKHLQGVQFHPES 202
+ + H+ K Q HPE+
Sbjct: 329 HKSLFDGTLQGIHRTDKPAFSFQGHPEA 356
>pdb|2VXO|A Chain A, Human Gmp Synthetase In Complex With Xmp
pdb|2VXO|B Chain B, Human Gmp Synthetase In Complex With Xmp
Length = 697
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 71/155 (45%), Gaps = 13/155 (8%)
Query: 64 LKRKNPRGVLISPGPGA--PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRS 121
+K + R ++IS GP + +D+ + +G P+ G+C G+Q + + FGG + +
Sbjct: 68 IKEQGFRAIIISGGPNSVYAEDAPWFDPAIFTIGK--PVLGICYGMQMMNKVFGGTVHKK 125
Query: 122 PLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGL 181
+ + + L GL H ++K + D +V A + G
Sbjct: 126 SVR----EDGVFNISVDNTCSLFRGLQKEEVVLLTHGDSVDKVA---DGFKVVARS--GN 176
Query: 182 IMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI 216
I+A + K L G QFHPE +T GK I++NF+
Sbjct: 177 IVAGIANESKKLYGAQFHPEVGLTENGKVILKNFL 211
>pdb|3TQI|A Chain A, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|B Chain B, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|C Chain C, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|D Chain D, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
Length = 527
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 90/204 (44%), Gaps = 11/204 (5%)
Query: 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ 82
+++ I+++D + + + + E+G + E+ D + E ++ NP G+++S GP
Sbjct: 9 HQHRILILDFGSQYAQLIARRVREIGVYCELMPCD-IDEETIRDFNPHGIILSGGPETVT 67
Query: 83 DSGI--SLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGE 140
S + + E+G P+ G+C G+Q + GGK+ R+ V
Sbjct: 68 LSHTLRAPAFIFEIG--CPVLGICYGMQTMAYQLGGKVNRTAKAEFGHAQLRVLNPAFLF 125
Query: 141 DGLLAGLS---NPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQ 197
DG+ +S P I E P E TA T++ + A K + G+Q
Sbjct: 126 DGIEDQVSPQGEPLLDVWMSHGDIVSELPP--GFEATACTDNSPLAAMADFKRRFF-GLQ 182
Query: 198 FHPESIITTEGKTIVRNFIKMIVR 221
FHPE T +G I+ +F+ I +
Sbjct: 183 FHPEVTHTPQGHRILAHFVIHICQ 206
>pdb|1C30|B Chain B, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|D Chain D, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|F Chain F, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|H Chain H, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C3O|B Chain B, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|D Chain D, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|F Chain F, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|H Chain H, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
Length = 382
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 70/148 (47%), Gaps = 16/148 (10%)
Query: 58 ELTVEELKRKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAF 114
+ + E++ + NP G+ +S GPG AP D I+ +Q LE +P+FG+ +G Q + A
Sbjct: 222 QTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLET--DIPVFGISLGHQLLALAS 279
Query: 115 GGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVT 174
G K V+ G HG + V EK + A + H +++ + P++ L VT
Sbjct: 280 GAKTVKMKFG-HHGGNHPVKDVEKNVVMITA---------QNHGFAVDEATLPAN-LRVT 328
Query: 175 AWTEDGLIMAARHKKYKHLQGVQFHPES 202
+ + H+ K Q HPE+
Sbjct: 329 HKSLFDGTLQGIHRTDKPAFSFQGHPEA 356
>pdb|1CS0|B Chain B, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|D Chain D, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|F Chain F, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|H Chain H, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1KEE|B Chain B, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|D Chain D, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|F Chain F, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|H Chain H, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
Length = 382
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 70/148 (47%), Gaps = 16/148 (10%)
Query: 58 ELTVEELKRKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAF 114
+ + E++ + NP G+ +S GPG AP D I+ +Q LE +P+FG+ +G Q + A
Sbjct: 222 QTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLET--DIPVFGIXLGHQLLALAS 279
Query: 115 GGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVT 174
G K V+ G HG + V EK + A + H +++ + P++ L VT
Sbjct: 280 GAKTVKMKFG-HHGGNHPVKDVEKNVVMITA---------QNHGFAVDEATLPAN-LRVT 328
Query: 175 AWTEDGLIMAARHKKYKHLQGVQFHPES 202
+ + H+ K Q HPE+
Sbjct: 329 HKSLFDGTLQGIHRTDKPAFSFQGHPEA 356
>pdb|3R74|A Chain A, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
pdb|3R74|B Chain B, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
Length = 645
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 88/209 (42%), Gaps = 34/209 (16%)
Query: 28 IVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-- 85
+++D D FT + Q + LG EV + +L R + V++ PGPG P D+G
Sbjct: 450 LIVDAEDHFTAMIAQQLSSLGLATEVCGVHDAV--DLARYDV--VVMGPGPGDPSDAGDP 505
Query: 86 ------ISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKG 139
L+ +++ G P VC+ Q + G +VR + + + + ++
Sbjct: 506 RIARLYAWLRHLIDEGK--PFMAVCLSHQILNAILGIPLVRREVPNQGIQVEIDLFGQRE 563
Query: 140 EDGLLAGLSNPFTAGRYHSLVIE--KESFPSDALEVTAWTED---GLIMAARHKKYKHLQ 194
G Y++ V + ++ D + A + D G + A R + +Q
Sbjct: 564 RVGF------------YNTYVAQTVRDEMDVDGVGTVAISRDPRTGEVHALRGPTFSSMQ 611
Query: 195 GVQFHPESIITTEGKTIVRNFIKMIVRKE 223
FH ES++T +G I+ I +R+E
Sbjct: 612 ---FHAESVLTVDGPRILGEAITHAIRRE 637
>pdb|2A9V|A Chain A, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|B Chain B, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|C Chain C, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|D Chain D, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
Length = 212
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 84/205 (40%), Gaps = 13/205 (6%)
Query: 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
I V+DN +T+ + + ELG ++ ND ++ + G+++S G +
Sbjct: 16 IYVVDNGGQWTHREWRVLRELGVDTKIVPND---IDSSELDGLDGLVLSGGAPNIDEELD 72
Query: 87 SLQTVLEL--GPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLL 144
L +V + P+ G+C+G Q I FG +V++ V + E +
Sbjct: 73 KLGSVGKYIDDHNYPILGICVGAQFIALHFGASVVKAKHPEFGKTKVSVXHSEN----IF 128
Query: 145 AGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESII 204
GL + T H+ E + P D + A + + HK + + QFHPE
Sbjct: 129 GGLPSEITVWENHN--DEIINLPDD-FTLAASSATCQVQGFYHKT-RPIYATQFHPEVEH 184
Query: 205 TTEGKTIVRNFIKMIVRKEAADSQN 229
T G+ I RNFI + +N
Sbjct: 185 TQYGRDIFRNFIGICASYREIQKEN 209
>pdb|1A9X|B Chain B, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|D Chain D, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|F Chain F, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|H Chain H, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
Length = 379
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 16/148 (10%)
Query: 58 ELTVEELKRKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAF 114
+ + E++ + NP G+ +S GPG AP D I+ +Q LE +P+FG+ +G Q + A
Sbjct: 221 QTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLET--DIPVFGIXLGHQLLALAS 278
Query: 115 GGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVT 174
G K V+ G HG + V EK + A + H +++ + P++ L VT
Sbjct: 279 GAKTVKMKFG-HHGGNHPVKDVEKNVVMITA---------QNHGFAVDEATLPAN-LRVT 327
Query: 175 AWTEDGLIMAARHKKYKHLQGVQFHPES 202
+ + H+ K Q +PE+
Sbjct: 328 HKSLFDGTLQGIHRTDKPAFSFQGNPEA 355
>pdb|3UOW|A Chain A, Crystal Structure Of Pf10_0123, A Gmp Synthetase From
Plasmodium Falciparum
pdb|3UOW|B Chain B, Crystal Structure Of Pf10_0123, A Gmp Synthetase From
Plasmodium Falciparum
Length = 556
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 83/196 (42%), Gaps = 42/196 (21%)
Query: 61 VEELKRKNPRGVLISPGP------GAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAF 114
++++K N +GV++S GP G+P + LE +P+FG+C G+Q I
Sbjct: 43 LKDIKDMNIKGVILSGGPYSVTEAGSPHLKKEVFEYFLE--KKIPIFGICYGMQEIAVQM 100
Query: 115 GGKIVRSP--------LGVMHGK--SSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKE 164
G++ +S + ++ +++ Y G+ L + + + E
Sbjct: 101 NGEVKKSKTSEYGCTDVNILRNDNINNITYCRNFGDSSSAMDLYSNYKLMNETCCLF--E 158
Query: 165 SFPSDALEVTAW-------------------TEDGLIMAARHKKYKHLQGVQFHPESIIT 205
+ SD T W +E+ LI + +K+Y ++ GVQ+HPE +
Sbjct: 159 NIKSDI--TTVWMNHNDEVTKIPENFYLVSSSENCLICSIYNKEY-NIYGVQYHPEVYES 215
Query: 206 TEGKTIVRNFIKMIVR 221
+G+ + NF I +
Sbjct: 216 LDGELMFYNFAYNICK 231
>pdb|3R75|A Chain A, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
In Complex With Benzoate, Pyruvate, Glutamine And
Contaminating Zn2+
pdb|3R75|B Chain B, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
In Complex With Benzoate, Pyruvate, Glutamine And
Contaminating Zn2+
pdb|3R76|A Chain A, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
In Complex With Benzoate, Pyruvate And Glutamine
pdb|3R76|B Chain B, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
In Complex With Benzoate, Pyruvate And Glutamine
Length = 645
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 87/209 (41%), Gaps = 34/209 (16%)
Query: 28 IVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-- 85
+++D D FT + Q + LG EV + +L R + V++ PGPG P D+G
Sbjct: 450 LIVDAEDHFTAMIAQQLSSLGLATEVCGVHDAV--DLARYDV--VVMGPGPGDPSDAGDP 505
Query: 86 ------ISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKG 139
L+ +++ G P V + Q + G +VR + + + + ++
Sbjct: 506 RIARLYAWLRHLIDEGK--PFMAVXLSHQILNAILGIPLVRREVPNQGIQVEIDLFGQRE 563
Query: 140 EDGLLAGLSNPFTAGRYHSLVIE--KESFPSDALEVTAWTED---GLIMAARHKKYKHLQ 194
G Y++ V + ++ D + A + D G + A R + +Q
Sbjct: 564 RVGF------------YNTYVAQTVRDEMDVDGVGTVAISRDPRTGEVHALRGPTFSSMQ 611
Query: 195 GVQFHPESIITTEGKTIVRNFIKMIVRKE 223
FH ES++T +G I+ I +R+E
Sbjct: 612 ---FHAESVLTVDGPRILGEAITHAIRRE 637
>pdb|3M3P|A Chain A, Crystal Structure Of Glutamine Amido Transferase From
Methylobacillus Flagellatus
Length = 250
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 51 FEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-----GPTVPLFGVCM 105
F+V R D + ++ G+ GP + D T+L L VP+ G C+
Sbjct: 31 FQVLRXDRSDPLPAEIRDCSGLAXXGGPXSANDDLPWXPTLLALIRDAVAQRVPVIGHCL 90
Query: 106 GLQCIGEAFGGKIVRSP 122
G Q + +A GG++ SP
Sbjct: 91 GGQLLAKAXGGEVTDSP 107
>pdb|3L7N|A Chain A, Crystal Structure Of Smu.1228c
Length = 236
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 100 LFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGE-DGLLAGLSNPFTAGRYH 157
+ GVC+G Q +G A+G + SP + + L+ E G+ D L+ S+ G +H
Sbjct: 87 IVGVCLGAQLMGVAYGADYLHSPKKEI--GNYLISLTEAGKMDSYLSDFSDDLLVGHWH 143
>pdb|2NV0|A Chain A, Structure Of The Glutaminase Subunit Pdx2 (Yaae) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV0|B Chain B, Structure Of The Glutaminase Subunit Pdx2 (Yaae) Of Plp
Synthase From Bacillus Subtilis
Length = 196
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 19/127 (14%)
Query: 99 PLFGVCMGLQCIGEAFGGKIVRSP----LGVMHGKSSL-VYYDEKGEDGLLAGLSNPFTA 153
P+FG C GL + + G +P L V+ ++S D D + GL PFT
Sbjct: 74 PMFGTCAGLIILAKEIAGS--DNPHLGLLNVVVERNSFGRQVDSFEADLTIKGLDEPFTG 131
Query: 154 GRYHSLVIEKESFPSDALEVTAWTE-DGLIMAARHKKYKHLQGVQFHPESIITTEGKTIV 212
+ I V +E +G I+AA+ ++ G FHPE TE +
Sbjct: 132 -----VFIRAPHILEAGENVEVLSEHNGRIVAAKQGQFL---GCSFHPE---LTEDHRVT 180
Query: 213 RNFIKMI 219
+ F++M+
Sbjct: 181 QLFVEMV 187
>pdb|4GUD|A Chain A, Crystal Structure Of Amidotransferase Hish From Vibrio
Cholerae
pdb|4GUD|B Chain B, Crystal Structure Of Amidotransferase Hish From Vibrio
Cholerae
Length = 211
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 95/211 (45%), Gaps = 31/211 (14%)
Query: 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI 86
+++ID + ++ + LGY + R+ ++ + K L PG G ++
Sbjct: 5 VVIIDTGCANISSVKFAIERLGYAVTISRDPQVVLAADK-------LFLPGVGTASEAXK 57
Query: 87 SL--QTVLELGPTV--PLFGVCMGLQCIG---EAFGGKI--VRSPLGVMHGKSSLVYYDE 137
+L + ++EL V PL G+C+G Q +G E G K + LG++ G+ L+ +
Sbjct: 58 NLTERDLIELVKRVEKPLLGICLGXQLLGKLSEEKGQKADEIVQCLGLVDGEVRLL---Q 114
Query: 138 KGEDGLLAGLSNPFTAGRYHSLV--IEKESF----PSDALEVTAWT----EDGLIMAARH 187
G+ L N H L IE +++ S A V +T E G +A
Sbjct: 115 TGDLPLPHXGWNTVQVKEGHPLFNGIEPDAYFYFVHSFAXPVGDYTIAQCEYGQPFSAAI 174
Query: 188 KKYKHLQGVQFHPESIITTEGKTIVRNFIKM 218
+ + GVQFHPE + G +++NF+++
Sbjct: 175 QAGNYY-GVQFHPER-SSKAGARLIQNFLEL 203
>pdb|2AYX|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
700-949) Containing Linker Region And Phosphoreceiver
Domain
Length = 254
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP 81
N+ I+V+D++ L +G LGY + ND + + KN +++S P
Sbjct: 127 NDDMMILVVDDHPINRRLLADQLGSLGYQCKTA-NDGVDALNVLSKNHIDIVLS-DVNMP 184
Query: 82 QDSGISL-QTVLELGPTVPLFGV 103
G L Q + +LG T+P+ GV
Sbjct: 185 NMDGYRLTQRIRQLGLTLPVIGV 207
>pdb|2CR5|A Chain A, Solution Structure Of The Ubx Domain Of D0h8s2298e
Protein
Length = 109
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 40 LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVL 92
L +M ++GYH +YR L PR L G + +D GI++ TVL
Sbjct: 49 LLDWMMKVGYHKSLYR--------LSTSFPRRALEVEGGSSLEDIGITVDTVL 93
>pdb|2AYZ|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
817-949) Containing Phosphoreceiver Domain
Length = 133
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP 81
N+ I+V+D++ L +G LGY + ND + + KN +++S P
Sbjct: 6 NDDMMILVVDDHPINRRLLADQLGSLGYQCKTA-NDGVDALNVLSKNHIDIVLS-DVNMP 63
Query: 82 QDSGISL-QTVLELGPTVPLFGV 103
G L Q + +LG T+P+ GV
Sbjct: 64 NMDGYRLTQRIRQLGLTLPVIGV 86
>pdb|1LEH|A Chain A, Leucine Dehydrogenase From Bacillus Sphaericus
pdb|1LEH|B Chain B, Leucine Dehydrogenase From Bacillus Sphaericus
Length = 364
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 160 VIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEG 208
V+ + P +V A + D + RH KY H G+ + P+ +I G
Sbjct: 242 VLNDFTIPQLKAKVIAGSADNQLKDPRHGKYLHELGIVYAPDYVINAGG 290
>pdb|3D46|A Chain A, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And L-Tartrate
pdb|3D46|B Chain B, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And L-Tartrate
pdb|3D46|C Chain C, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And L-Tartrate
pdb|3D46|D Chain D, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And L-Tartrate
pdb|3D46|E Chain E, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And L-Tartrate
pdb|3D46|F Chain F, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And L-Tartrate
pdb|3D46|G Chain G, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And L-Tartrate
pdb|3D46|H Chain H, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And L-Tartrate
pdb|3D47|A Chain A, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And D-Malate
pdb|3D47|B Chain B, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And D-Malate
pdb|3D47|C Chain C, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And D-Malate
pdb|3D47|D Chain D, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And D-Malate
pdb|3D47|E Chain E, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And D-Malate
pdb|3D47|F Chain F, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And D-Malate
pdb|3D47|G Chain G, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And D-Malate
pdb|3D47|H Chain H, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And D-Malate
Length = 405
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 62 EELKRKNPRGVLISPGP--GAPQDSGISLQTVLELGPTV--PLFGVCMGLQCIGEAFGGK 117
ELKR P G++++ G G Q S +T+ E G + P G C GL + E
Sbjct: 264 RELKRNAPAGMMVTSGEHHGTLQ----SFRTLAETGIDIMQPDVGWCGGLTTLVEIAALA 319
Query: 118 IVRSPLGVMHGKS 130
R L V HG S
Sbjct: 320 KSRGQLVVPHGSS 332
>pdb|2GSH|A Chain A, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium
pdb|2GSH|B Chain B, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium
Length = 414
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 62 EELKRKNPRGVLISPGP--GAPQDSGISLQTVLELGPTV--PLFGVCMGLQCIGEAFGGK 117
ELKR P G++++ G G Q S +T+ E G + P G C GL + E
Sbjct: 265 RELKRNAPAGMMVTSGEHHGTLQ----SFRTLAETGIDIMQPDVGWCGGLTTLVEIAALA 320
Query: 118 IVRSPLGVMHGKS 130
R L V HG S
Sbjct: 321 KSRGQLVVPHGSS 333
>pdb|2P3Z|A Chain A, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium
pdb|2P3Z|B Chain B, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium
pdb|3BOX|A Chain A, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg
pdb|3BOX|B Chain B, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg
pdb|3CXO|A Chain A, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And 3-Deoxy-L-
Rhamnonate
pdb|3CXO|B Chain B, Crystal Structure Of L-Rhamnonate Dehydratase From
Salmonella Typhimurium Complexed With Mg And 3-Deoxy-L-
Rhamnonate
Length = 415
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 62 EELKRKNPRGVLISPGP--GAPQDSGISLQTVLELGPTV--PLFGVCMGLQCIGEAFGGK 117
ELKR P G++++ G G Q S +T+ E G + P G C GL + E
Sbjct: 266 RELKRNAPAGMMVTSGEHHGTLQ----SFRTLAETGIDIMQPDVGWCGGLTTLVEIAALA 321
Query: 118 IVRSPLGVMHGKS 130
R L V HG S
Sbjct: 322 KSRGQLVVPHGSS 334
>pdb|2NV2|B Chain B, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|D Chain D, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|F Chain F, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|H Chain H, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|J Chain J, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|L Chain L, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|N Chain N, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|P Chain P, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|R Chain R, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|T Chain T, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|V Chain V, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|X Chain X, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
Length = 204
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 19/127 (14%)
Query: 99 PLFGVCMGLQCIGEAFGGKIVRSP----LGVMHGKSSL-VYYDEKGEDGLLAGLSNPFTA 153
P+FG C GL + + G +P L V+ ++S D D + GL PFT
Sbjct: 74 PMFGTCAGLIILAKEIAGS--DNPHLGLLNVVVERNSFGRQVDSFEADLTIKGLDEPFTG 131
Query: 154 GRYHSLVIEKESFPSDALEVTAWTE-DGLIMAARHKKYKHLQGVQFHPESIITTEGKTIV 212
+ I V +E +G I+AA+ ++ G F+PE TE +
Sbjct: 132 -----VFIRAPHILEAGENVEVLSEHNGRIVAAKQGQFL---GCSFNPE---LTEDHRVT 180
Query: 213 RNFIKMI 219
+ F++M+
Sbjct: 181 QLFVEMV 187
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,964,767
Number of Sequences: 62578
Number of extensions: 309604
Number of successful extensions: 781
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 721
Number of HSP's gapped (non-prelim): 38
length of query: 229
length of database: 14,973,337
effective HSP length: 95
effective length of query: 134
effective length of database: 9,028,427
effective search space: 1209809218
effective search space used: 1209809218
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)