Query 027062
Match_columns 229
No_of_seqs 195 out of 1444
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 04:26:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027062.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027062hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0512 PabA Anthranilate/para 100.0 5.8E-47 1.3E-51 292.0 21.3 189 24-218 1-190 (191)
2 PLN02335 anthranilate synthase 100.0 1.3E-46 2.9E-51 304.7 24.2 205 21-225 15-219 (222)
3 PRK08007 para-aminobenzoate sy 100.0 2E-45 4.3E-50 291.0 22.4 186 26-217 1-186 (187)
4 PRK07649 para-aminobenzoate/an 100.0 5E-45 1.1E-49 290.2 23.1 190 26-221 1-190 (195)
5 TIGR00566 trpG_papA glutamine 100.0 6.8E-44 1.5E-48 282.6 22.8 186 26-217 1-187 (188)
6 PRK05670 anthranilate synthase 100.0 8.9E-44 1.9E-48 282.4 21.9 188 26-219 1-188 (189)
7 CHL00101 trpG anthranilate syn 100.0 1.1E-43 2.4E-48 281.8 21.6 188 26-218 1-188 (190)
8 PRK06774 para-aminobenzoate sy 100.0 3.2E-43 7E-48 279.6 21.9 186 26-217 1-190 (191)
9 PRK06895 putative anthranilate 100.0 1.4E-42 3.1E-47 275.6 22.2 187 24-217 1-187 (190)
10 PRK08857 para-aminobenzoate sy 100.0 1.8E-42 3.9E-47 275.7 22.5 187 26-218 1-192 (193)
11 PRK05637 anthranilate synthase 100.0 6.3E-42 1.4E-46 274.5 21.4 190 25-221 2-207 (208)
12 KOG0026 Anthranilate synthase, 100.0 5.3E-41 1.2E-45 250.1 18.8 204 18-221 12-216 (223)
13 cd01743 GATase1_Anthranilate_S 100.0 1.5E-40 3.2E-45 263.0 21.6 182 27-216 1-184 (184)
14 PRK07765 para-aminobenzoate sy 100.0 5.7E-40 1.2E-44 264.7 22.4 190 25-220 1-193 (214)
15 TIGR00888 guaA_Nterm GMP synth 100.0 4.1E-40 9E-45 261.2 21.2 184 27-220 1-185 (188)
16 COG0518 GuaA GMP synthase - Gl 100.0 3.6E-40 7.8E-45 261.3 16.4 186 25-220 2-194 (198)
17 PRK00758 GMP synthase subunit 100.0 8.1E-39 1.8E-43 253.0 19.8 182 26-220 1-182 (184)
18 PRK09522 bifunctional glutamin 100.0 7.7E-39 1.7E-43 287.3 21.5 188 25-221 2-192 (531)
19 cd01742 GATase1_GMP_Synthase T 100.0 8.9E-39 1.9E-43 252.1 18.7 179 27-216 1-181 (181)
20 PLN02347 GMP synthetase 100.0 3.4E-38 7.4E-43 282.8 22.7 191 25-224 11-207 (536)
21 PRK14607 bifunctional glutamin 100.0 5.4E-38 1.2E-42 283.4 21.5 189 26-220 1-190 (534)
22 PF00117 GATase: Glutamine ami 100.0 4.9E-38 1.1E-42 250.1 16.6 187 28-218 1-191 (192)
23 PRK00074 guaA GMP synthase; Re 100.0 1.6E-37 3.4E-42 278.9 21.5 186 25-221 4-191 (511)
24 PLN02889 oxo-acid-lyase/anthra 100.0 1.4E-36 2.9E-41 283.0 22.8 193 24-223 81-339 (918)
25 PRK13566 anthranilate synthase 100.0 2E-36 4.3E-41 279.2 23.3 194 20-220 522-719 (720)
26 TIGR01815 TrpE-clade3 anthrani 100.0 2.5E-36 5.5E-41 278.1 23.0 195 21-222 513-711 (717)
27 TIGR01368 CPSaseIIsmall carbam 100.0 2.7E-35 5.8E-40 252.2 21.0 182 25-220 174-357 (358)
28 PRK12564 carbamoyl phosphate s 100.0 6.3E-35 1.4E-39 250.3 21.9 180 24-218 177-359 (360)
29 PRK12838 carbamoyl phosphate s 100.0 9.7E-35 2.1E-39 248.4 21.6 184 24-221 167-352 (354)
30 cd01744 GATase1_CPSase Small c 100.0 9.5E-35 2.1E-39 228.5 19.6 175 27-216 1-178 (178)
31 CHL00197 carA carbamoyl-phosph 100.0 1.8E-34 3.9E-39 248.3 21.6 183 24-223 192-378 (382)
32 COG0505 CarA Carbamoylphosphat 100.0 2.7E-34 5.8E-39 239.1 20.0 187 23-224 178-367 (368)
33 PRK09065 glutamine amidotransf 100.0 2.1E-34 4.6E-39 235.8 17.3 163 34-203 21-189 (237)
34 PRK06490 glutamine amidotransf 100.0 1.9E-33 4.1E-38 230.1 20.0 179 21-217 4-191 (239)
35 TIGR01823 PabB-fungal aminodeo 100.0 3.4E-33 7.3E-38 259.4 23.2 195 21-223 2-208 (742)
36 PRK07567 glutamine amidotransf 100.0 2.1E-33 4.5E-38 230.4 18.2 170 25-203 2-193 (242)
37 PLN02771 carbamoyl-phosphate s 100.0 2.4E-33 5.3E-38 241.9 18.8 172 25-211 241-414 (415)
38 PRK05665 amidotransferase; Pro 100.0 3.8E-33 8.3E-38 228.2 19.0 170 24-203 2-189 (240)
39 PRK07053 glutamine amidotransf 100.0 1.4E-32 3.1E-37 224.3 20.3 172 24-203 2-181 (234)
40 PRK11366 puuD gamma-glutamyl-g 100.0 1E-31 2.3E-36 221.8 20.7 181 38-224 29-249 (254)
41 PRK08250 glutamine amidotransf 100.0 1.3E-31 2.8E-36 219.0 18.9 170 25-203 1-183 (235)
42 cd01741 GATase1_1 Subgroup of 100.0 9.4E-32 2E-36 213.3 16.5 176 26-216 1-188 (188)
43 PRK13146 hisH imidazole glycer 100.0 2.9E-31 6.2E-36 213.5 17.3 179 24-218 1-207 (209)
44 PRK13170 hisH imidazole glycer 100.0 6.2E-31 1.3E-35 209.6 18.7 173 25-217 1-195 (196)
45 cd01748 GATase1_IGP_Synthase T 100.0 9.5E-31 2.1E-35 209.2 16.1 173 27-216 1-198 (198)
46 PRK13141 hisH imidazole glycer 100.0 2.4E-30 5.1E-35 207.9 16.8 179 26-220 1-203 (205)
47 KOG1622 GMP synthase [Nucleoti 100.0 2.4E-31 5.1E-36 225.7 10.8 188 24-222 16-207 (552)
48 PRK13181 hisH imidazole glycer 100.0 3.7E-30 8E-35 205.9 16.5 175 26-217 1-198 (199)
49 COG0118 HisH Glutamine amidotr 100.0 1.1E-29 2.3E-34 197.3 18.2 180 24-219 1-203 (204)
50 PRK13525 glutamine amidotransf 100.0 1E-29 2.3E-34 201.4 17.8 172 24-220 1-188 (189)
51 cd01745 GATase1_2 Subgroup of 100.0 3.1E-30 6.8E-35 204.6 13.9 151 33-216 17-189 (189)
52 PRK13143 hisH imidazole glycer 100.0 2E-29 4.2E-34 201.7 18.4 179 25-220 1-199 (200)
53 CHL00188 hisH imidazole glycer 100.0 1.3E-29 2.9E-34 203.4 17.4 179 24-218 1-209 (210)
54 COG2071 Predicted glutamine am 100.0 1.8E-29 4E-34 200.8 16.0 178 38-222 29-241 (243)
55 PRK13152 hisH imidazole glycer 100.0 6.1E-29 1.3E-33 199.1 18.4 173 27-217 2-200 (201)
56 TIGR01855 IMP_synth_hisH imida 100.0 6.8E-29 1.5E-33 198.0 17.5 173 27-217 1-195 (196)
57 PRK14004 hisH imidazole glycer 100.0 3E-28 6.4E-33 195.6 18.0 178 27-218 2-209 (210)
58 PRK13527 glutamine amidotransf 100.0 5.6E-28 1.2E-32 193.4 17.8 180 26-220 4-198 (200)
59 KOG3179 Predicted glutamine sy 100.0 1.1E-28 2.3E-33 190.0 11.9 164 33-203 23-195 (245)
60 cd01746 GATase1_CTP_Synthase T 100.0 1.8E-28 3.9E-33 199.9 13.6 183 31-216 14-235 (235)
61 cd01747 GATase1_Glutamyl_Hydro 100.0 1.9E-27 4.1E-32 198.1 16.7 188 37-226 22-253 (273)
62 PRK06186 hypothetical protein; 100.0 1.3E-27 2.8E-32 192.0 14.8 192 25-220 2-227 (229)
63 PF07722 Peptidase_C26: Peptid 100.0 1.5E-27 3.2E-32 192.9 14.9 158 37-201 26-217 (217)
64 KOG1224 Para-aminobenzoate (PA 99.9 1.9E-26 4.2E-31 199.3 14.3 196 20-219 10-217 (767)
65 PRK05380 pyrG CTP synthetase; 99.9 4.8E-26 1E-30 201.4 16.3 197 23-224 287-531 (533)
66 TIGR00337 PyrG CTP synthase. C 99.9 1.5E-25 3.4E-30 198.1 17.5 192 23-218 288-525 (525)
67 PLN02617 imidazole glycerol ph 99.9 1.4E-24 3E-29 194.9 20.6 184 23-222 5-213 (538)
68 TIGR01737 FGAM_synth_I phospho 99.9 5.8E-25 1.3E-29 179.0 15.0 187 25-218 1-226 (227)
69 KOG0370 Multifunctional pyrimi 99.9 1.4E-24 3.1E-29 197.4 17.0 187 21-225 169-358 (1435)
70 PRK13142 hisH imidazole glycer 99.9 3.1E-24 6.7E-29 169.1 16.5 167 27-218 2-187 (192)
71 PLN02327 CTP synthase 99.9 1.1E-24 2.5E-29 193.0 15.2 201 23-225 296-552 (557)
72 cd01749 GATase1_PB Glutamine A 99.9 1.1E-24 2.5E-29 171.9 13.7 163 27-216 3-183 (183)
73 TIGR03800 PLP_synth_Pdx2 pyrid 99.9 4.1E-24 9E-29 168.5 16.2 167 26-217 1-184 (184)
74 COG0504 PyrG CTP synthase (UTP 99.9 1E-23 2.3E-28 181.9 13.1 199 25-224 289-531 (533)
75 PRK05368 homoserine O-succinyl 99.9 2.7E-22 5.9E-27 167.8 18.8 191 24-221 35-253 (302)
76 PRK03619 phosphoribosylformylg 99.9 5.5E-22 1.2E-26 160.6 16.5 186 25-217 1-218 (219)
77 PLN02832 glutamine amidotransf 99.8 1.3E-19 2.9E-24 147.7 17.5 84 24-114 1-89 (248)
78 COG0047 PurL Phosphoribosylfor 99.8 4.8E-19 1E-23 140.0 15.5 190 24-219 2-230 (231)
79 PRK01175 phosphoribosylformylg 99.8 2.5E-18 5.4E-23 142.1 16.6 194 23-220 2-258 (261)
80 PRK13526 glutamine amidotransf 99.8 4.8E-18 1E-22 131.9 16.0 166 25-217 3-178 (179)
81 KOG2387 CTP synthase (UTP-ammo 99.8 8.6E-19 1.9E-23 149.3 10.6 195 22-219 296-547 (585)
82 cd01740 GATase1_FGAR_AT Type 1 99.8 1.6E-17 3.4E-22 136.3 14.5 183 27-214 1-236 (238)
83 KOG1559 Gamma-glutamyl hydrola 99.7 1.1E-17 2.5E-22 132.7 7.2 165 37-204 79-272 (340)
84 PF13507 GATase_5: CobB/CobQ-l 99.7 1.1E-15 2.3E-20 126.1 12.8 191 24-218 1-258 (259)
85 KOG0623 Glutamine amidotransfe 99.6 2E-15 4.3E-20 125.5 12.2 178 26-218 3-207 (541)
86 COG0311 PDX2 Predicted glutami 99.6 7.5E-14 1.6E-18 107.0 15.6 171 25-221 1-192 (194)
87 PF01174 SNO: SNO glutamine am 99.5 6.3E-14 1.4E-18 108.6 10.0 165 34-220 6-187 (188)
88 TIGR01857 FGAM-synthase phosph 99.5 3.6E-13 7.9E-18 130.2 16.9 196 21-218 974-1238(1239)
89 PLN03206 phosphoribosylformylg 99.4 1.2E-11 2.7E-16 120.6 17.4 194 22-219 1035-1306(1307)
90 TIGR01735 FGAM_synt phosphorib 99.4 8E-12 1.7E-16 122.5 15.4 192 23-218 1054-1309(1310)
91 PRK05297 phosphoribosylformylg 99.4 2E-11 4.4E-16 119.9 16.9 193 23-219 1034-1289(1290)
92 PF04204 HTS: Homoserine O-suc 99.3 1.5E-11 3.3E-16 102.4 11.1 195 19-221 28-252 (298)
93 TIGR01001 metA homoserine O-su 99.2 7.5E-10 1.6E-14 91.8 14.4 189 24-221 35-252 (300)
94 cd03131 GATase1_HTS Type 1 glu 99.1 5.7E-11 1.2E-15 92.4 5.1 135 37-175 14-174 (175)
95 PHA03366 FGAM-synthase; Provis 99.1 2.8E-09 6.1E-14 105.0 17.5 198 22-222 1026-1302(1304)
96 TIGR01739 tegu_FGAM_synt herpe 99.1 3.7E-09 8.1E-14 103.7 15.3 178 22-203 927-1168(1202)
97 cd01750 GATase1_CobQ Type 1 gl 98.9 2E-09 4.4E-14 85.7 7.0 83 27-115 1-90 (194)
98 PRK06278 cobyrinic acid a,c-di 98.9 3.3E-08 7.1E-13 88.4 14.3 79 25-114 1-82 (476)
99 KOG3210 Imidazoleglycerol-phos 98.9 8.6E-08 1.9E-12 72.6 12.4 92 20-115 6-109 (226)
100 cd03130 GATase1_CobB Type 1 gl 98.8 1.7E-07 3.7E-12 74.8 14.0 73 38-114 14-92 (198)
101 PRK00784 cobyric acid synthase 98.6 1.4E-06 3E-11 78.9 13.6 84 24-114 251-342 (488)
102 COG1897 MetA Homoserine trans- 98.5 5.1E-06 1.1E-10 67.2 13.5 195 17-219 27-251 (307)
103 PRK01077 cobyrinic acid a,c-di 98.5 1.8E-05 3.8E-10 71.0 17.7 87 24-114 245-339 (451)
104 TIGR00379 cobB cobyrinic acid 98.4 1.1E-05 2.4E-10 72.3 13.8 87 24-114 244-338 (449)
105 cd01653 GATase1 Type 1 glutami 98.4 2.4E-06 5.3E-11 59.9 7.7 73 38-110 15-92 (115)
106 PRK11780 isoprenoid biosynthes 98.2 1.8E-05 4E-10 64.0 10.9 75 40-114 25-145 (217)
107 KOG1907 Phosphoribosylformylgl 98.2 2.9E-05 6.3E-10 72.6 12.6 178 22-203 1056-1285(1320)
108 PF07685 GATase_3: CobB/CobQ-l 98.2 1.8E-05 3.9E-10 60.9 9.4 48 68-115 7-60 (158)
109 cd03128 GAT_1 Type 1 glutamine 98.2 7.4E-06 1.6E-10 54.8 6.4 73 38-110 15-92 (92)
110 PRK13896 cobyrinic acid a,c-di 98.0 0.00011 2.4E-09 65.3 13.0 83 25-114 234-325 (433)
111 cd03169 GATase1_PfpI_1 Type 1 98.0 5.3E-05 1.1E-09 59.4 8.9 46 68-113 76-124 (180)
112 cd03146 GAT1_Peptidase_E Type 98.0 2.1E-05 4.6E-10 63.4 6.5 90 22-113 29-130 (212)
113 cd03133 GATase1_ES1 Type 1 glu 97.9 6.3E-05 1.4E-09 60.6 8.2 76 40-115 22-143 (213)
114 TIGR01382 PfpI intracellular p 97.9 8.6E-05 1.9E-09 57.3 8.6 75 39-113 17-108 (166)
115 cd03134 GATase1_PfpI_like A ty 97.8 0.00016 3.5E-09 55.7 8.9 75 39-113 17-110 (165)
116 TIGR00313 cobQ cobyric acid sy 97.8 2.5E-05 5.4E-10 70.4 4.4 81 25-114 248-336 (475)
117 cd03132 GATase1_catalase Type 97.7 0.00024 5.2E-09 53.4 8.3 89 25-113 2-111 (142)
118 COG1492 CobQ Cobyric acid synt 97.7 0.0001 2.2E-09 65.5 6.3 84 23-114 250-342 (486)
119 cd03147 GATase1_Ydr533c_like T 97.6 0.00031 6.8E-09 57.4 8.2 47 67-113 93-143 (231)
120 PRK05282 (alpha)-aspartyl dipe 97.5 0.0004 8.7E-09 56.7 6.8 91 23-115 30-131 (233)
121 cd03135 GATase1_DJ-1 Type 1 gl 97.4 0.00099 2.1E-08 51.0 8.5 75 39-113 16-109 (163)
122 cd03144 GATase1_ScBLP_like Typ 97.4 0.00023 4.9E-09 51.5 4.3 41 68-110 44-90 (114)
123 PRK11574 oxidative-stress-resi 97.4 0.0017 3.8E-08 51.5 9.5 88 24-112 2-114 (196)
124 cd03140 GATase1_PfpI_3 Type 1 97.4 0.0012 2.6E-08 51.2 8.3 74 40-113 17-107 (170)
125 PF09825 BPL_N: Biotin-protein 97.3 0.008 1.7E-07 52.3 13.3 87 25-112 1-97 (367)
126 COG0693 ThiJ Putative intracel 97.3 0.0013 2.7E-08 51.9 7.9 89 25-114 3-116 (188)
127 COG3442 Predicted glutamine am 97.2 0.0074 1.6E-07 48.2 11.0 169 40-223 26-219 (250)
128 PRK04155 chaperone protein Hch 97.2 0.0017 3.7E-08 54.7 7.9 47 67-113 146-196 (287)
129 cd03137 GATase1_AraC_1 AraC tr 97.2 0.0026 5.7E-08 49.9 8.6 46 68-113 64-112 (187)
130 PRK11249 katE hydroperoxidase 97.2 0.0019 4.1E-08 60.9 8.7 104 10-113 580-707 (752)
131 cd03141 GATase1_Hsp31_like Typ 97.1 0.0018 3.9E-08 52.6 7.3 46 68-113 90-139 (221)
132 cd03148 GATase1_EcHsp31_like T 97.0 0.0039 8.3E-08 51.0 8.2 46 68-113 96-145 (232)
133 COG1797 CobB Cobyrinic acid a, 97.0 0.02 4.4E-07 50.5 12.7 180 22-219 243-450 (451)
134 TIGR01383 not_thiJ DJ-1 family 96.9 0.0068 1.5E-07 47.2 8.0 75 39-113 17-112 (179)
135 PF01965 DJ-1_PfpI: DJ-1/PfpI 96.8 0.0004 8.7E-09 52.6 0.8 54 60-113 29-87 (147)
136 cd03129 GAT1_Peptidase_E_like 96.8 0.0068 1.5E-07 48.7 7.6 89 23-113 28-130 (210)
137 cd03139 GATase1_PfpI_2 Type 1 96.6 0.011 2.4E-07 46.1 7.9 46 68-113 62-110 (183)
138 PF06283 ThuA: Trehalose utili 96.1 0.38 8.2E-06 38.7 14.1 167 26-203 1-199 (217)
139 KOG2764 Putative transcription 96.1 0.021 4.6E-07 46.0 6.4 70 41-110 25-113 (247)
140 cd03138 GATase1_AraC_2 AraC tr 96.0 0.013 2.8E-07 46.3 5.0 46 68-113 69-120 (195)
141 PF13278 DUF4066: Putative ami 95.8 0.013 2.8E-07 45.1 4.0 46 68-113 61-109 (166)
142 PRK04539 ppnK inorganic polyph 95.5 0.11 2.5E-06 44.0 9.0 77 24-107 5-102 (296)
143 PRK03708 ppnK inorganic polyph 95.4 0.072 1.6E-06 44.8 7.3 77 25-107 1-90 (277)
144 PRK03378 ppnK inorganic polyph 95.3 0.1 2.3E-06 44.1 8.0 77 24-107 5-97 (292)
145 PRK02155 ppnK NAD(+)/NADH kina 95.1 0.18 3.9E-06 42.7 9.1 77 24-107 5-97 (291)
146 PRK03372 ppnK inorganic polyph 95.1 0.15 3.2E-06 43.5 8.4 77 24-107 5-106 (306)
147 PRK01911 ppnK inorganic polyph 95.1 0.17 3.6E-06 42.9 8.6 76 25-107 1-98 (292)
148 cd03136 GATase1_AraC_ArgR_like 95.0 0.053 1.1E-06 42.4 5.2 46 68-113 64-111 (185)
149 PRK09393 ftrA transcriptional 94.1 0.11 2.3E-06 44.6 5.4 46 68-113 75-122 (322)
150 COG3340 PepE Peptidase E [Amin 93.6 0.27 5.8E-06 39.4 6.4 88 21-108 29-129 (224)
151 PF00072 Response_reg: Respons 93.5 0.29 6.3E-06 34.2 6.0 77 27-104 1-78 (112)
152 PLN02929 NADH kinase 93.4 0.21 4.6E-06 42.4 5.8 61 37-106 36-96 (301)
153 TIGR02069 cyanophycinase cyano 93.3 0.44 9.4E-06 39.5 7.6 89 23-113 27-132 (250)
154 PRK01231 ppnK inorganic polyph 93.3 0.59 1.3E-05 39.7 8.4 77 24-107 4-96 (295)
155 cd03145 GAT1_cyanophycinase Ty 93.2 0.61 1.3E-05 37.7 8.1 89 23-113 28-133 (217)
156 PRK02649 ppnK inorganic polyph 93.2 0.49 1.1E-05 40.3 7.8 76 25-107 2-102 (305)
157 PRK14077 pnk inorganic polypho 93.1 0.58 1.3E-05 39.6 8.0 77 24-107 10-98 (287)
158 PRK11104 hemG protoporphyrinog 92.8 0.98 2.1E-05 35.2 8.5 79 25-106 1-87 (177)
159 PRK04885 ppnK inorganic polyph 92.4 0.47 1E-05 39.7 6.5 64 25-107 1-71 (265)
160 COG4090 Uncharacterized protei 92.3 0.37 8.1E-06 35.4 5.0 43 69-113 86-130 (154)
161 PRK14075 pnk inorganic polypho 92.2 0.68 1.5E-05 38.5 7.2 70 25-107 1-72 (256)
162 PF03575 Peptidase_S51: Peptid 91.8 0.17 3.6E-06 38.5 3.0 73 37-109 2-81 (154)
163 PF09897 DUF2124: Uncharacteri 91.4 0.3 6.5E-06 36.7 3.8 84 21-105 16-119 (147)
164 KOG1467 Translation initiation 91.1 0.65 1.4E-05 41.6 6.1 93 12-109 374-473 (556)
165 smart00852 MoCF_biosynth Proba 90.7 1.2 2.6E-05 33.0 6.6 60 34-94 17-82 (135)
166 PRK01185 ppnK inorganic polyph 90.3 1.2 2.5E-05 37.4 6.8 73 25-106 1-82 (271)
167 PRK02645 ppnK inorganic polyph 89.7 1.9 4.1E-05 36.8 7.8 76 24-105 3-89 (305)
168 PF06490 FleQ: Flagellar regul 89.6 0.74 1.6E-05 32.9 4.5 75 26-103 1-75 (109)
169 PLN02727 NAD kinase 89.4 1.5 3.2E-05 42.6 7.5 80 21-107 675-777 (986)
170 PRK14076 pnk inorganic polypho 89.3 1.5 3.3E-05 40.8 7.4 78 22-107 288-382 (569)
171 PRK02231 ppnK inorganic polyph 89.3 1.5 3.1E-05 36.9 6.6 62 38-106 3-75 (272)
172 PRK00561 ppnK inorganic polyph 88.6 1.1 2.5E-05 37.2 5.5 66 25-107 1-67 (259)
173 PLN02935 Bifunctional NADH kin 87.7 2.8 6.1E-05 38.1 7.7 78 24-107 194-296 (508)
174 PRK14690 molybdopterin biosynt 86.7 5.8 0.00013 35.5 9.2 51 36-87 221-277 (419)
175 PF01513 NAD_kinase: ATP-NAD k 86.3 1.3 2.8E-05 37.3 4.7 76 26-107 1-110 (285)
176 PRK09468 ompR osmolarity respo 86.1 6.1 0.00013 31.4 8.5 81 23-105 4-85 (239)
177 TIGR00177 molyb_syn molybdenum 85.2 6.3 0.00014 29.5 7.6 60 34-94 26-91 (144)
178 COG2204 AtoC Response regulato 84.8 4.8 0.0001 36.4 7.7 80 22-103 2-82 (464)
179 PRK03501 ppnK inorganic polyph 84.7 4.6 0.0001 33.7 7.2 64 26-106 4-74 (264)
180 cd00758 MoCF_BD MoCF_BD: molyb 84.6 5.4 0.00012 29.4 6.9 60 34-94 18-83 (133)
181 CHL00148 orf27 Ycf27; Reviewed 84.5 8.3 0.00018 30.5 8.5 81 22-105 4-85 (240)
182 PRK15029 arginine decarboxylas 84.2 5.7 0.00012 38.2 8.3 78 25-104 1-92 (755)
183 TIGR02667 moaB_proteo molybden 84.1 15 0.00031 28.3 9.3 47 33-79 20-74 (163)
184 PF03698 UPF0180: Uncharacteri 83.9 2.3 5.1E-05 28.6 4.1 46 25-80 2-47 (80)
185 PRK10816 DNA-binding transcrip 83.8 7.7 0.00017 30.5 8.0 79 25-105 1-80 (223)
186 PRK10336 DNA-binding transcrip 83.3 8.5 0.00018 29.9 8.0 79 25-104 1-79 (219)
187 COG0303 MoeA Molybdopterin bio 83.1 4.2 9.2E-05 36.1 6.6 69 23-92 175-265 (404)
188 cd00886 MogA_MoaB MogA_MoaB fa 81.8 5.7 0.00012 30.0 6.2 59 34-93 19-85 (152)
189 cd00885 cinA Competence-damage 81.7 12 0.00025 29.1 7.9 79 35-115 19-103 (170)
190 PLN03029 type-a response regul 81.6 9.5 0.00021 30.7 7.7 35 21-55 5-39 (222)
191 PRK01372 ddl D-alanine--D-alan 81.5 15 0.00031 30.9 9.2 52 24-75 4-63 (304)
192 COG4977 Transcriptional regula 81.1 3.4 7.4E-05 35.6 5.1 46 68-113 76-124 (328)
193 PRK13435 response regulator; P 80.6 11 0.00024 27.4 7.4 85 23-108 4-89 (145)
194 PRK11083 DNA-binding response 80.3 15 0.00033 28.6 8.5 79 24-104 3-82 (228)
195 smart00448 REC cheY-homologous 80.2 5.7 0.00012 21.7 4.6 50 25-74 1-50 (55)
196 COG4285 Uncharacterized conser 80.1 6.6 0.00014 31.7 6.0 46 68-118 49-98 (253)
197 PRK06703 flavodoxin; Provision 80.0 7.4 0.00016 29.2 6.2 48 25-74 2-54 (151)
198 PRK06756 flavodoxin; Provision 79.9 11 0.00024 28.1 7.1 49 25-75 2-56 (148)
199 COG1031 Uncharacterized Fe-S o 79.5 6.2 0.00013 35.5 6.2 75 25-102 1-103 (560)
200 COG0745 OmpR Response regulato 79.4 4 8.6E-05 33.3 4.8 90 25-117 1-96 (229)
201 PRK10680 molybdopterin biosynt 79.3 9.4 0.0002 34.0 7.5 43 37-79 206-254 (411)
202 PRK10643 DNA-binding transcrip 79.1 11 0.00025 29.2 7.4 78 25-104 1-79 (222)
203 PRK09836 DNA-binding transcrip 79.1 14 0.00031 29.0 8.0 77 25-103 1-78 (227)
204 COG4635 HemG Flavodoxin [Energ 78.2 3.6 7.7E-05 31.6 3.8 80 25-106 1-88 (175)
205 PRK05568 flavodoxin; Provision 78.0 25 0.00053 25.8 9.5 50 26-78 3-57 (142)
206 PRK01215 competence damage-ind 77.7 15 0.00033 30.6 7.9 44 36-79 24-73 (264)
207 PRK14498 putative molybdopteri 77.1 20 0.00043 33.8 9.4 44 36-79 214-263 (633)
208 COG1184 GCD2 Translation initi 77.0 19 0.00042 30.6 8.3 79 21-104 142-228 (301)
209 cd02067 B12-binding B12 bindin 76.4 9 0.0002 27.4 5.5 63 38-101 17-85 (119)
210 cd03522 MoeA_like MoeA_like. T 76.3 31 0.00067 29.6 9.5 70 24-94 159-244 (312)
211 PF13941 MutL: MutL protein 75.6 25 0.00053 31.9 9.0 79 23-101 75-159 (457)
212 PRK10161 transcriptional regul 75.5 22 0.00047 27.9 8.1 79 25-104 3-83 (229)
213 PRK03673 hypothetical protein; 75.4 12 0.00025 33.3 6.9 46 35-80 21-72 (396)
214 TIGR03787 marine_sort_RR prote 75.3 22 0.00047 27.8 8.1 79 26-104 2-81 (227)
215 COG1609 PurR Transcriptional r 74.9 20 0.00044 30.7 8.3 40 37-76 77-122 (333)
216 PRK14497 putative molybdopteri 74.6 11 0.00023 35.0 6.6 43 37-79 208-256 (546)
217 PRK11173 two-component respons 74.4 30 0.00065 27.4 8.8 78 24-104 3-81 (237)
218 cd00887 MoeA MoeA family. Memb 74.3 15 0.00032 32.6 7.3 57 36-93 196-258 (394)
219 cd01425 RPS2 Ribosomal protein 74.1 37 0.00079 26.8 8.9 76 23-104 55-157 (193)
220 PRK10365 transcriptional regul 73.9 24 0.00052 31.2 8.7 81 22-104 3-84 (441)
221 COG1058 CinA Predicted nucleot 73.7 21 0.00046 29.7 7.6 50 34-83 20-75 (255)
222 PRK02261 methylaspartate mutas 73.6 34 0.00073 25.4 8.1 71 23-94 2-81 (137)
223 TIGR01012 Sa_S2_E_A ribosomal 73.5 19 0.00041 28.7 7.0 75 24-104 61-138 (196)
224 PRK03094 hypothetical protein; 73.2 5.3 0.00012 26.9 3.3 37 38-80 11-47 (80)
225 PLN02884 6-phosphofructokinase 73.1 3.8 8.3E-05 36.5 3.3 50 64-113 139-201 (411)
226 COG2185 Sbm Methylmalonyl-CoA 73.1 21 0.00046 26.9 6.8 73 22-95 10-91 (143)
227 PF09075 STb_secrete: Heat-sta 72.9 0.65 1.4E-05 26.5 -1.0 17 99-115 31-47 (48)
228 TIGR00147 lipid kinase, YegS/R 72.8 33 0.00072 28.7 8.9 57 25-81 2-70 (293)
229 TIGR01319 glmL_fam conserved h 72.6 29 0.00064 31.4 8.7 79 23-101 71-155 (463)
230 cd05014 SIS_Kpsf KpsF-like pro 72.4 17 0.00037 26.0 6.3 79 26-106 2-83 (128)
231 PRK03767 NAD(P)H:quinone oxido 71.4 33 0.0007 27.1 8.1 32 25-56 2-39 (200)
232 cd06284 PBP1_LacI_like_6 Ligan 71.2 20 0.00043 28.8 7.1 60 38-104 19-84 (267)
233 PF00994 MoCF_biosynth: Probab 71.0 7.1 0.00015 29.1 4.0 81 34-116 16-102 (144)
234 PRK06849 hypothetical protein; 70.9 27 0.00058 30.6 8.2 37 21-57 1-37 (389)
235 PRK10841 hybrid sensory kinase 70.8 29 0.00064 34.3 9.1 81 23-105 800-881 (924)
236 PRK09390 fixJ response regulat 70.6 40 0.00086 25.3 8.4 81 23-104 2-82 (202)
237 COG4126 Hydantoin racemase [Am 70.6 11 0.00024 30.5 5.0 47 68-121 69-115 (230)
238 TIGR02990 ectoine_eutA ectoine 70.4 29 0.00062 28.5 7.7 76 23-103 119-212 (239)
239 PRK09958 DNA-binding transcrip 69.9 27 0.00058 26.7 7.3 77 25-103 1-79 (204)
240 PRK09271 flavodoxin; Provision 69.8 23 0.0005 26.9 6.7 52 25-76 1-59 (160)
241 TIGR00200 cinA_nterm competenc 69.2 21 0.00046 31.8 7.1 45 35-79 20-70 (413)
242 PRK00549 competence damage-ind 69.2 34 0.00074 30.5 8.5 47 34-80 19-71 (414)
243 PRK14491 putative bifunctional 69.0 23 0.00049 33.3 7.6 44 36-79 395-444 (597)
244 PRK15479 transcriptional regul 69.0 41 0.0009 25.9 8.3 78 25-104 1-79 (221)
245 PRK14569 D-alanyl-alanine synt 68.8 49 0.0011 27.8 9.1 52 23-74 2-62 (296)
246 PRK11361 acetoacetate metaboli 68.4 32 0.00069 30.7 8.3 82 21-104 1-83 (457)
247 PRK04020 rps2P 30S ribosomal p 68.3 42 0.00091 26.9 8.0 75 24-104 67-144 (204)
248 PRK11517 transcriptional regul 67.7 12 0.00027 29.1 5.0 77 25-104 1-78 (223)
249 PRK04761 ppnK inorganic polyph 67.7 6 0.00013 32.7 3.2 34 68-107 25-59 (246)
250 PRK03670 competence damage-ind 67.6 35 0.00076 28.3 7.7 47 35-81 20-73 (252)
251 PRK13837 two-component VirA-li 67.1 35 0.00076 33.2 8.8 81 23-106 696-778 (828)
252 cd00363 PFK Phosphofructokinas 67.1 3.9 8.5E-05 35.4 2.1 50 64-113 88-150 (338)
253 TIGR01849 PHB_depoly_PhaZ poly 67.1 15 0.00032 32.8 5.6 78 25-113 103-185 (406)
254 PRK15115 response regulator Gl 66.8 43 0.00094 29.7 8.8 80 23-104 4-84 (444)
255 COG3155 ElbB Uncharacterized p 66.1 9.4 0.0002 29.4 3.6 52 68-119 85-150 (217)
256 PTZ00254 40S ribosomal protein 65.8 38 0.00082 28.0 7.4 75 24-104 71-148 (249)
257 PRK10610 chemotaxis regulatory 65.8 17 0.00037 24.6 4.9 82 21-104 2-87 (129)
258 KOG4180 Predicted kinase [Gene 65.4 9.4 0.0002 32.8 3.9 58 38-103 78-135 (395)
259 PF01008 IF-2B: Initiation fac 65.1 10 0.00023 31.6 4.3 84 18-105 127-218 (282)
260 TIGR02154 PhoB phosphate regul 65.1 16 0.00034 28.4 5.1 78 25-104 3-83 (226)
261 PRK10923 glnG nitrogen regulat 64.6 45 0.00097 29.9 8.5 79 24-104 3-82 (469)
262 PTZ00286 6-phospho-1-fructokin 64.4 5.8 0.00012 35.9 2.7 50 64-113 172-234 (459)
263 PRK00421 murC UDP-N-acetylmura 64.1 66 0.0014 28.9 9.5 56 23-78 6-76 (461)
264 PRK14072 6-phosphofructokinase 64.1 5.2 0.00011 35.7 2.3 49 64-112 99-160 (416)
265 PRK13054 lipid kinase; Reviewe 64.0 18 0.0004 30.5 5.6 59 24-82 3-70 (300)
266 PRK15347 two component system 63.9 36 0.00079 33.2 8.3 81 23-105 689-774 (921)
267 PRK06555 pyrophosphate--fructo 63.9 6.3 0.00014 35.0 2.7 50 64-113 108-170 (403)
268 PF02310 B12-binding: B12 bind 63.7 25 0.00054 24.8 5.6 38 38-76 18-59 (121)
269 PRK13856 two-component respons 63.7 61 0.0013 25.8 8.4 77 26-105 3-80 (241)
270 PRK11914 diacylglycerol kinase 63.6 17 0.00037 30.7 5.3 57 25-81 9-77 (306)
271 COG0061 nadF NAD kinase [Coenz 63.5 43 0.00093 28.1 7.6 63 38-106 19-88 (281)
272 PRK10766 DNA-binding transcrip 62.8 19 0.00042 28.0 5.2 77 25-104 3-80 (221)
273 TIGR02477 PFKA_PPi diphosphate 62.7 6.4 0.00014 36.4 2.7 50 64-113 157-221 (539)
274 PRK03604 moaC bifunctional mol 62.6 33 0.00071 29.4 6.8 58 36-94 176-240 (312)
275 PRK13558 bacterio-opsin activa 62.6 36 0.00079 32.0 7.8 79 24-104 7-86 (665)
276 TIGR01755 flav_wrbA NAD(P)H:qu 61.9 77 0.0017 24.9 9.7 31 26-56 2-38 (197)
277 PRK07085 diphosphate--fructose 61.8 6.8 0.00015 36.3 2.7 50 64-113 160-224 (555)
278 PRK14571 D-alanyl-alanine synt 61.6 46 0.001 27.9 7.6 51 25-75 1-60 (299)
279 cd02071 MM_CoA_mut_B12_BD meth 61.3 52 0.0011 23.7 6.9 40 38-78 17-60 (122)
280 PF03358 FMN_red: NADPH-depend 61.1 21 0.00046 26.4 5.0 34 25-58 1-41 (152)
281 PF10087 DUF2325: Uncharacteri 61.0 51 0.0011 22.6 8.6 86 26-113 1-92 (97)
282 cd06295 PBP1_CelR Ligand bindi 60.9 65 0.0014 26.0 8.3 39 40-78 32-74 (275)
283 PRK09191 two-component respons 60.8 53 0.0011 26.5 7.6 82 23-105 136-218 (261)
284 PRK10701 DNA-binding transcrip 60.6 19 0.0004 28.7 4.8 77 25-104 2-79 (240)
285 PRK05569 flavodoxin; Provision 60.5 64 0.0014 23.5 10.5 50 26-78 3-57 (141)
286 cd01575 PBP1_GntR Ligand-bindi 60.0 49 0.0011 26.5 7.3 41 38-78 19-65 (268)
287 PRK06830 diphosphate--fructose 59.8 7.7 0.00017 34.9 2.6 50 64-113 168-230 (443)
288 PRK09417 mogA molybdenum cofac 59.7 42 0.00091 26.6 6.5 44 36-79 24-77 (193)
289 TIGR01754 flav_RNR ribonucleot 59.7 35 0.00076 25.1 5.9 50 25-76 1-58 (140)
290 PRK10529 DNA-binding transcrip 59.5 21 0.00045 27.9 4.9 77 25-104 2-79 (225)
291 PLN02251 pyrophosphate-depende 59.2 8.6 0.00019 35.7 2.8 50 64-113 186-250 (568)
292 PF00455 DeoRC: DeoR C termina 58.8 34 0.00073 26.1 5.7 80 23-104 18-101 (161)
293 PLN03028 pyrophosphate--fructo 58.6 8.6 0.00019 36.0 2.8 50 64-113 169-233 (610)
294 PRK10840 transcriptional regul 58.1 69 0.0015 25.1 7.7 81 24-104 3-87 (216)
295 cd06309 PBP1_YtfQ_like Peripla 58.1 59 0.0013 26.3 7.5 41 37-77 18-64 (273)
296 PRK11091 aerobic respiration c 58.0 66 0.0014 30.9 8.8 82 23-106 524-609 (779)
297 PRK13055 putative lipid kinase 57.8 27 0.00058 30.1 5.5 57 25-81 3-72 (334)
298 COG0784 CheY FOG: CheY-like re 57.7 35 0.00076 23.9 5.5 85 22-108 3-89 (130)
299 cd06329 PBP1_SBP_like_3 Peripl 57.7 99 0.0021 26.2 9.1 89 24-115 143-245 (342)
300 PRK09483 response regulator; P 57.6 56 0.0012 25.2 7.1 78 25-104 2-82 (217)
301 PF02056 Glyco_hydro_4: Family 57.5 21 0.00045 28.1 4.4 24 91-114 154-177 (183)
302 COG1454 EutG Alcohol dehydroge 57.4 83 0.0018 27.8 8.5 62 25-87 30-104 (377)
303 PRK10651 transcriptional regul 57.3 72 0.0016 24.3 7.6 85 20-105 2-88 (216)
304 PRK09959 hybrid sensory histid 57.1 40 0.00087 34.2 7.4 82 21-104 955-1037(1197)
305 cd01545 PBP1_SalR Ligand-bindi 56.4 59 0.0013 26.1 7.3 41 38-78 19-66 (270)
306 PRK10355 xylF D-xylose transpo 56.2 41 0.00088 28.7 6.4 55 23-77 24-90 (330)
307 PLN02958 diacylglycerol kinase 55.9 27 0.00059 31.8 5.5 61 22-82 109-182 (481)
308 TIGR01753 flav_short flavodoxi 55.6 75 0.0016 22.8 8.4 35 40-76 19-53 (140)
309 PF04321 RmlD_sub_bind: RmlD s 55.4 21 0.00045 29.9 4.4 58 25-82 1-65 (286)
310 cd00765 Pyrophosphate_PFK Phos 54.9 11 0.00024 34.9 2.8 50 64-113 162-226 (550)
311 cd06292 PBP1_LacI_like_10 Liga 54.5 71 0.0015 25.7 7.4 40 38-77 19-64 (273)
312 cd06281 PBP1_LacI_like_5 Ligan 54.4 63 0.0014 26.0 7.1 41 38-78 19-65 (269)
313 PRK00141 murD UDP-N-acetylmura 54.3 86 0.0019 28.4 8.5 33 23-56 14-46 (473)
314 COG3947 Response regulator con 54.3 35 0.00075 29.2 5.3 79 25-105 1-80 (361)
315 COG0771 MurD UDP-N-acetylmuram 54.2 1.1E+02 0.0023 27.8 8.8 33 24-57 7-39 (448)
316 cd02070 corrinoid_protein_B12- 54.0 63 0.0014 25.5 6.8 71 24-95 82-161 (201)
317 COG4566 TtrR Response regulato 53.9 84 0.0018 25.0 7.1 75 24-103 4-82 (202)
318 PLN02564 6-phosphofructokinase 53.6 11 0.00024 34.3 2.5 49 64-112 172-233 (484)
319 cd01541 PBP1_AraR Ligand-bindi 53.2 62 0.0013 26.1 6.9 40 39-78 20-65 (273)
320 COG3199 Predicted inorganic po 53.1 22 0.00048 30.8 4.1 39 64-109 96-135 (355)
321 COG2201 CheB Chemotaxis respon 53.1 72 0.0016 27.9 7.3 51 24-74 1-53 (350)
322 PRK10423 transcriptional repre 52.6 1.2E+02 0.0026 25.2 8.8 41 38-78 76-122 (327)
323 cd06320 PBP1_allose_binding Pe 52.4 57 0.0012 26.4 6.5 61 39-103 20-88 (275)
324 cd01080 NAD_bind_m-THF_DH_Cycl 52.3 42 0.0009 25.9 5.3 54 22-77 42-96 (168)
325 PRK10710 DNA-binding transcrip 52.0 40 0.00086 26.5 5.4 79 24-105 10-89 (240)
326 PRK15399 lysine decarboxylase 51.9 69 0.0015 30.9 7.6 75 25-103 1-82 (713)
327 PF00763 THF_DHG_CYH: Tetrahyd 51.9 56 0.0012 23.5 5.6 54 22-75 27-94 (117)
328 COG0429 Predicted hydrolase of 51.6 97 0.0021 26.9 7.7 76 34-115 90-167 (345)
329 PRK01390 murD UDP-N-acetylmura 51.3 1.1E+02 0.0025 27.3 8.7 55 24-79 9-76 (460)
330 PLN02699 Bifunctional molybdop 51.3 82 0.0018 30.1 8.0 44 37-80 211-261 (659)
331 cd01574 PBP1_LacI Ligand-bindi 51.2 73 0.0016 25.4 7.0 40 38-77 19-65 (264)
332 PRK13059 putative lipid kinase 50.9 39 0.00084 28.5 5.4 44 39-82 23-70 (295)
333 TIGR00640 acid_CoA_mut_C methy 50.6 93 0.002 22.9 6.7 40 38-78 20-63 (132)
334 PRK05928 hemD uroporphyrinogen 50.6 17 0.00036 29.3 3.0 90 25-119 2-103 (249)
335 cd06300 PBP1_ABC_sugar_binding 50.3 55 0.0012 26.4 6.1 39 39-77 20-69 (272)
336 PRK09267 flavodoxin FldA; Vali 49.9 1.1E+02 0.0024 23.1 9.5 50 25-76 2-54 (169)
337 COG0521 MoaB Molybdopterin bio 49.8 40 0.00086 26.2 4.7 43 38-80 30-79 (169)
338 cd08179 NADPH_BDH NADPH-depend 49.8 1.3E+02 0.0028 26.3 8.6 64 25-89 24-101 (375)
339 cd06318 PBP1_ABC_sugar_binding 49.2 68 0.0015 26.0 6.5 39 38-76 19-63 (282)
340 TIGR00524 eIF-2B_rel eIF-2B al 49.2 50 0.0011 28.1 5.8 82 20-104 148-238 (303)
341 TIGR00315 cdhB CO dehydrogenas 48.8 84 0.0018 24.2 6.4 83 21-106 25-135 (162)
342 TIGR02956 TMAO_torS TMAO reduc 48.7 79 0.0017 31.1 7.9 80 24-105 702-785 (968)
343 TIGR01387 cztR_silR_copR heavy 48.7 1E+02 0.0022 23.5 7.2 76 27-104 1-77 (218)
344 PRK08335 translation initiatio 48.6 98 0.0021 26.0 7.3 80 20-104 131-218 (275)
345 PRK11303 DNA-binding transcrip 48.5 1.4E+02 0.0031 24.8 8.6 54 24-77 61-126 (328)
346 cd06287 PBP1_LacI_like_8 Ligan 48.3 84 0.0018 25.6 6.9 39 38-77 27-65 (269)
347 PRK15408 autoinducer 2-binding 48.2 77 0.0017 27.2 6.9 58 19-76 18-88 (336)
348 PRK13337 putative lipid kinase 48.2 41 0.0009 28.4 5.2 57 25-81 2-70 (304)
349 cd05008 SIS_GlmS_GlmD_1 SIS (S 48.0 77 0.0017 22.4 6.0 77 26-106 1-82 (126)
350 TIGR00333 nrdI ribonucleoside- 47.5 91 0.002 22.8 6.2 67 33-104 3-69 (125)
351 cd06299 PBP1_LacI_like_13 Liga 47.3 1.1E+02 0.0023 24.5 7.4 41 38-78 19-65 (265)
352 PF00532 Peripla_BP_1: Peripla 47.2 69 0.0015 26.6 6.3 40 38-77 21-65 (279)
353 COG1597 LCB5 Sphingosine kinas 47.0 55 0.0012 27.8 5.7 45 37-81 22-71 (301)
354 cd06316 PBP1_ABC_sugar_binding 46.9 92 0.002 25.6 7.0 38 39-76 20-64 (294)
355 PRK12419 riboflavin synthase s 46.7 39 0.00086 25.9 4.3 55 23-77 9-78 (158)
356 COG4242 CphB Cyanophycinase an 46.7 1.1E+02 0.0024 25.4 7.0 94 19-112 47-155 (293)
357 cd06277 PBP1_LacI_like_1 Ligan 46.6 98 0.0021 24.8 7.1 40 38-77 22-67 (268)
358 cd06319 PBP1_ABC_sugar_binding 46.6 76 0.0016 25.6 6.4 39 39-77 20-64 (277)
359 PRK01368 murD UDP-N-acetylmura 46.5 1.8E+02 0.0039 26.2 9.2 30 24-55 6-35 (454)
360 PF05582 Peptidase_U57: YabG p 46.3 1.7E+02 0.0038 24.7 8.2 101 23-123 104-228 (287)
361 PRK06395 phosphoribosylamine-- 46.2 1.1E+02 0.0025 27.4 7.9 30 24-54 2-31 (435)
362 cd06301 PBP1_rhizopine_binding 46.1 74 0.0016 25.6 6.3 39 39-77 20-65 (272)
363 cd08187 BDH Butanol dehydrogen 46.1 1.2E+02 0.0025 26.7 7.8 62 25-87 29-104 (382)
364 TIGR02638 lactal_redase lactal 46.0 1.3E+02 0.0028 26.3 8.1 62 25-87 30-104 (379)
365 PLN02778 3,5-epimerase/4-reduc 45.4 1.3E+02 0.0028 25.2 7.8 58 21-79 6-68 (298)
366 cd06273 PBP1_GntR_like_1 This 45.2 1E+02 0.0022 24.7 7.0 60 38-103 19-84 (268)
367 TIGR01839 PHA_synth_II poly(R) 45.1 24 0.00052 32.8 3.4 66 38-112 237-304 (560)
368 cd06279 PBP1_LacI_like_3 Ligan 45.1 86 0.0019 25.6 6.6 40 38-77 24-65 (283)
369 PRK10703 DNA-binding transcrip 44.8 1.5E+02 0.0032 24.9 8.1 55 23-77 58-124 (341)
370 cd06310 PBP1_ABC_sugar_binding 44.3 91 0.002 25.1 6.5 39 39-77 20-66 (273)
371 TIGR00511 ribulose_e2b2 ribose 44.0 1E+02 0.0022 26.2 6.9 80 20-104 137-224 (301)
372 PLN02712 arogenate dehydrogena 43.6 1.1E+02 0.0024 29.2 7.6 50 6-56 351-400 (667)
373 PRK08535 translation initiatio 43.6 93 0.002 26.6 6.6 80 20-104 142-229 (310)
374 TIGR02417 fruct_sucro_rep D-fr 43.4 1.9E+02 0.0042 24.0 8.8 54 24-77 60-125 (327)
375 PF00318 Ribosomal_S2: Ribosom 43.3 1.6E+02 0.0036 23.5 7.7 34 22-55 54-87 (211)
376 COG4607 CeuA ABC-type enteroch 43.3 69 0.0015 27.3 5.5 51 21-77 55-127 (320)
377 cd06298 PBP1_CcpA_like Ligand- 43.3 1E+02 0.0023 24.5 6.7 39 39-77 20-64 (268)
378 TIGR02634 xylF D-xylose ABC tr 43.2 78 0.0017 26.4 6.1 41 36-76 16-62 (302)
379 cd08186 Fe-ADH8 Iron-containin 42.9 1.7E+02 0.0036 25.7 8.3 62 25-87 27-102 (383)
380 COG1736 DPH2 Diphthamide synth 42.9 90 0.0019 27.2 6.3 48 37-84 256-304 (347)
381 cd08185 Fe-ADH1 Iron-containin 42.8 1.6E+02 0.0035 25.7 8.2 62 25-87 26-101 (380)
382 cd06334 PBP1_ABC_ligand_bindin 42.8 2.2E+02 0.0047 24.4 9.1 89 24-115 140-240 (351)
383 KOG4435 Predicted lipid kinase 42.7 49 0.0011 29.4 4.7 82 24-107 60-153 (535)
384 cd06324 PBP1_ABC_sugar_binding 42.6 94 0.002 25.8 6.5 40 38-77 20-67 (305)
385 PRK13015 3-dehydroquinate dehy 42.6 1.1E+02 0.0025 23.1 6.1 40 40-79 35-78 (146)
386 cd02065 B12-binding_like B12 b 42.5 81 0.0018 22.2 5.3 40 38-78 17-60 (125)
387 cd06274 PBP1_FruR Ligand bindi 42.4 1E+02 0.0022 24.7 6.6 41 38-78 19-65 (264)
388 PRK10955 DNA-binding transcrip 42.4 54 0.0012 25.5 4.8 76 25-104 2-78 (232)
389 PF01220 DHquinase_II: Dehydro 42.4 70 0.0015 24.0 4.9 39 39-79 33-77 (140)
390 cd06315 PBP1_ABC_sugar_binding 42.2 1E+02 0.0022 25.2 6.6 40 38-77 20-65 (280)
391 PRK10046 dpiA two-component re 42.1 1.7E+02 0.0037 23.1 8.0 80 22-103 2-84 (225)
392 TIGR02855 spore_yabG sporulati 42.0 2.1E+02 0.0046 24.1 8.2 100 24-123 104-227 (283)
393 COG1440 CelA Phosphotransferas 41.4 1.3E+02 0.0027 21.3 5.9 81 25-113 2-96 (102)
394 PF00289 CPSase_L_chain: Carba 41.3 36 0.00078 24.3 3.2 32 25-57 3-34 (110)
395 PRK13557 histidine kinase; Pro 41.3 1.4E+02 0.0031 26.6 7.9 80 23-104 414-496 (540)
396 TIGR03682 arCOG04112 arCOG0411 41.2 1.2E+02 0.0027 25.8 6.9 47 38-84 232-278 (308)
397 cd00763 Bacterial_PFK Phosphof 40.9 18 0.0004 31.0 1.9 44 64-113 88-144 (317)
398 PRK03369 murD UDP-N-acetylmura 40.8 2.1E+02 0.0045 26.1 8.8 31 24-55 12-42 (488)
399 PRK05299 rpsB 30S ribosomal pr 40.7 1.7E+02 0.0036 24.4 7.5 30 23-52 63-92 (258)
400 cd06271 PBP1_AglR_RafR_like Li 40.7 1.3E+02 0.0029 23.9 7.0 41 38-78 23-69 (268)
401 cd01542 PBP1_TreR_like Ligand- 40.6 1.1E+02 0.0023 24.4 6.4 40 38-77 19-64 (259)
402 PRK09526 lacI lac repressor; R 40.6 2.2E+02 0.0047 23.9 8.7 39 38-76 83-128 (342)
403 PRK14987 gluconate operon tran 40.5 1.9E+02 0.004 24.2 8.1 53 24-76 63-127 (331)
404 cd06297 PBP1_LacI_like_12 Liga 40.4 1.3E+02 0.0027 24.3 6.8 40 38-77 19-64 (269)
405 COG1587 HemD Uroporphyrinogen- 40.4 66 0.0014 26.3 5.1 94 24-122 1-104 (248)
406 cd06282 PBP1_GntR_like_2 Ligan 40.3 1.3E+02 0.0028 23.9 6.9 61 39-104 20-86 (266)
407 COG0569 TrkA K+ transport syst 40.3 73 0.0016 25.7 5.2 53 25-78 1-53 (225)
408 COG4567 Response regulator con 40.3 72 0.0016 24.6 4.7 35 22-56 7-41 (182)
409 PRK15454 ethanol dehydrogenase 40.3 1.5E+02 0.0033 26.1 7.6 63 24-87 49-124 (395)
410 cd06296 PBP1_CatR_like Ligand- 40.2 1.3E+02 0.0027 24.1 6.8 40 38-77 19-64 (270)
411 KOG0292 Vesicle coat complex C 40.0 25 0.00053 34.4 2.6 30 170-200 116-145 (1202)
412 cd01538 PBP1_ABC_xylose_bindin 39.9 1.8E+02 0.004 23.7 7.8 40 38-77 19-64 (288)
413 cd08183 Fe-ADH2 Iron-containin 39.9 1.4E+02 0.003 26.1 7.3 62 25-87 23-93 (374)
414 PRK05395 3-dehydroquinate dehy 39.7 1.3E+02 0.0029 22.7 6.1 40 40-79 35-78 (146)
415 PF04263 TPK_catalytic: Thiami 39.7 1.5E+02 0.0032 21.6 6.3 55 27-81 38-97 (123)
416 TIGR03702 lip_kinase_YegS lipi 39.7 70 0.0015 26.8 5.2 45 38-82 17-66 (293)
417 PF10230 DUF2305: Uncharacteri 39.5 23 0.0005 29.4 2.2 36 70-105 4-40 (266)
418 cd02069 methionine_synthase_B1 39.4 1.3E+02 0.0029 24.0 6.6 76 23-99 87-171 (213)
419 TIGR01818 ntrC nitrogen regula 39.3 1.4E+02 0.0031 26.6 7.5 76 27-104 1-77 (463)
420 PRK06372 translation initiatio 39.2 1.8E+02 0.0038 24.2 7.3 76 25-105 110-193 (253)
421 PRK15400 lysine decarboxylase 39.0 1.3E+02 0.0027 29.1 7.2 76 25-104 1-83 (714)
422 PRK04308 murD UDP-N-acetylmura 38.8 2.8E+02 0.0061 24.6 9.5 32 24-56 5-36 (445)
423 cd08551 Fe-ADH iron-containing 38.8 2.2E+02 0.0047 24.8 8.3 63 25-88 24-99 (370)
424 COG0075 Serine-pyruvate aminot 38.8 1.2E+02 0.0025 27.0 6.5 55 23-78 79-141 (383)
425 TIGR02483 PFK_mixed phosphofru 38.7 22 0.00048 30.6 2.0 44 64-113 90-146 (324)
426 TIGR01481 ccpA catabolite cont 38.6 2.1E+02 0.0045 23.9 8.1 54 24-77 59-124 (329)
427 PRK12480 D-lactate dehydrogena 38.5 1.1E+02 0.0023 26.4 6.2 51 25-76 2-53 (330)
428 TIGR02482 PFKA_ATP 6-phosphofr 38.5 23 0.0005 30.2 2.1 46 63-113 86-144 (301)
429 cd06322 PBP1_ABC_sugar_binding 38.2 1.8E+02 0.0039 23.2 7.4 40 38-77 19-64 (267)
430 PTZ00468 phosphofructokinase f 38.0 27 0.00057 35.7 2.7 50 64-113 192-256 (1328)
431 cd08178 AAD_C C-terminal alcoh 37.9 2.3E+02 0.005 25.0 8.4 63 25-88 22-97 (398)
432 PRK14573 bifunctional D-alanyl 37.9 2.4E+02 0.0052 27.5 9.2 33 24-56 4-36 (809)
433 COG0413 PanB Ketopantoate hydr 37.8 68 0.0015 26.7 4.6 29 68-103 107-136 (268)
434 cd05212 NAD_bind_m-THF_DH_Cycl 37.8 1.3E+02 0.0028 22.5 5.8 55 21-77 25-80 (140)
435 PRK10014 DNA-binding transcrip 37.8 2.4E+02 0.0051 23.7 8.3 40 39-78 85-130 (342)
436 COG2247 LytB Putative cell wal 37.7 1E+02 0.0022 26.5 5.7 38 44-81 48-88 (337)
437 PF11051 Mannosyl_trans3: Mann 37.6 22 0.00047 29.7 1.8 37 70-106 2-38 (271)
438 cd08170 GlyDH Glycerol dehydro 37.6 1E+02 0.0022 26.6 6.0 75 25-104 23-108 (351)
439 PRK06242 flavodoxin; Provision 37.5 1.6E+02 0.0035 21.5 6.8 49 25-78 1-52 (150)
440 cd08181 PPD-like 1,3-propanedi 37.4 2.5E+02 0.0055 24.3 8.5 62 25-87 26-101 (357)
441 cd08193 HVD 5-hydroxyvalerate 37.4 2.2E+02 0.0047 24.9 8.1 65 25-90 27-104 (376)
442 cd08194 Fe-ADH6 Iron-containin 37.4 2.2E+02 0.0048 24.8 8.2 64 25-89 24-100 (375)
443 cd08191 HHD 6-hydroxyhexanoate 37.4 1.9E+02 0.0041 25.4 7.7 63 25-88 23-98 (386)
444 PF12724 Flavodoxin_5: Flavodo 37.3 66 0.0014 23.7 4.2 38 68-105 43-83 (143)
445 PF13380 CoA_binding_2: CoA bi 37.3 1.5E+02 0.0033 21.1 8.0 31 26-56 2-35 (116)
446 PRK02006 murD UDP-N-acetylmura 37.2 3.2E+02 0.0069 24.8 9.5 32 24-56 7-38 (498)
447 cd01543 PBP1_XylR Ligand-bindi 37.2 1.6E+02 0.0034 23.6 6.9 39 38-76 18-58 (265)
448 cd06305 PBP1_methylthioribose_ 37.2 1.8E+02 0.0038 23.3 7.2 40 38-77 19-64 (273)
449 cd06267 PBP1_LacI_sugar_bindin 37.0 1.4E+02 0.0031 23.4 6.6 40 39-78 20-65 (264)
450 PRK00742 chemotaxis-specific m 36.9 1.9E+02 0.0042 24.7 7.7 79 24-105 3-84 (354)
451 cd05298 GH4_GlvA_pagL_like Gly 36.9 76 0.0016 28.6 5.2 18 96-113 158-175 (437)
452 KOG1116 Sphingosine kinase, in 36.7 60 0.0013 30.2 4.5 44 40-83 203-251 (579)
453 PRK09860 putative alcohol dehy 36.4 2.3E+02 0.0049 24.9 8.1 63 25-88 32-107 (383)
454 PLN02735 carbamoyl-phosphate s 36.4 1.3E+02 0.0028 30.6 7.2 35 23-57 22-66 (1102)
455 PLN02204 diacylglycerol kinase 36.2 88 0.0019 29.4 5.6 62 22-83 157-233 (601)
456 PRK06444 prephenate dehydrogen 36.0 1.2E+02 0.0026 24.1 5.7 28 25-52 1-28 (197)
457 PLN02256 arogenate dehydrogena 35.7 2E+02 0.0043 24.5 7.4 35 21-56 33-67 (304)
458 TIGR00512 salvage_mtnA S-methy 35.7 1.2E+02 0.0027 26.2 6.1 82 20-104 176-266 (331)
459 PF02882 THF_DHG_CYH_C: Tetrah 35.5 1.4E+02 0.0031 22.8 5.8 56 21-77 33-88 (160)
460 PRK11107 hybrid sensory histid 35.4 80 0.0017 30.8 5.6 80 23-104 666-748 (919)
461 TIGR01011 rpsB_bact ribosomal 35.3 1.9E+02 0.004 23.5 6.8 30 22-51 60-89 (225)
462 cd06275 PBP1_PurR Ligand-bindi 35.1 2.1E+02 0.0046 22.7 7.4 40 38-77 19-64 (269)
463 cd06290 PBP1_LacI_like_9 Ligan 35.0 1.6E+02 0.0036 23.4 6.6 39 39-77 20-64 (265)
464 PRK10653 D-ribose transporter 34.8 1.7E+02 0.0038 24.0 6.9 38 39-76 47-90 (295)
465 KOG1273 WD40 repeat protein [G 34.8 43 0.00094 28.8 3.1 21 181-203 99-119 (405)
466 PRK00153 hypothetical protein; 34.7 1.5E+02 0.0031 20.8 5.4 45 170-216 28-72 (104)
467 PRK02472 murD UDP-N-acetylmura 34.6 3.3E+02 0.0071 24.1 9.5 31 24-55 5-35 (447)
468 PF12641 Flavodoxin_3: Flavodo 34.6 2.1E+02 0.0045 21.9 7.3 71 31-105 5-77 (160)
469 PLN02979 glycolate oxidase 34.6 3.2E+02 0.007 24.1 8.5 84 37-122 211-307 (366)
470 PRK11466 hybrid sensory histid 34.6 1.8E+02 0.0039 28.4 7.9 79 23-103 680-760 (914)
471 CHL00067 rps2 ribosomal protei 34.5 2.1E+02 0.0045 23.3 7.0 29 23-51 67-95 (230)
472 PRK06371 translation initiatio 34.4 1.5E+02 0.0034 25.6 6.5 82 20-104 166-256 (329)
473 cd03142 GATase1_ThuA Type 1 gl 34.4 2.5E+02 0.0054 22.7 16.1 115 34-153 22-143 (215)
474 PF13407 Peripla_BP_4: Peripla 34.4 2E+02 0.0043 22.9 7.0 64 39-106 19-89 (257)
475 PF14403 CP_ATPgrasp_2: Circul 34.3 95 0.0021 28.1 5.3 50 21-77 182-235 (445)
476 PRK05720 mtnA methylthioribose 34.0 1.5E+02 0.0033 25.8 6.5 81 20-104 176-266 (344)
477 PRK10624 L-1,2-propanediol oxi 34.0 2.7E+02 0.0058 24.4 8.1 61 25-86 31-104 (382)
478 PF01070 FMN_dh: FMN-dependent 33.6 2.7E+02 0.0058 24.3 8.0 82 39-122 216-309 (356)
479 COG1214 Inactive homolog of me 33.5 56 0.0012 26.4 3.5 38 68-105 58-97 (220)
480 PRK10499 PTS system N,N'-diace 33.5 1.7E+02 0.0037 20.6 7.0 50 25-75 4-57 (106)
481 PRK11041 DNA-binding transcrip 33.3 1.3E+02 0.0029 24.7 6.0 54 24-77 35-100 (309)
482 PRK04148 hypothetical protein; 33.3 1.3E+02 0.0029 22.3 5.2 40 23-64 16-55 (134)
483 COG3706 PleD Response regulato 33.1 1.1E+02 0.0023 27.7 5.5 95 23-119 131-232 (435)
484 cd01540 PBP1_arabinose_binding 33.1 1.1E+02 0.0024 24.9 5.4 39 38-77 19-63 (289)
485 PLN00158 histone H2B; Provisio 32.9 41 0.00089 24.3 2.3 27 196-222 38-64 (116)
486 PRK10339 DNA-binding transcrip 32.9 2.3E+02 0.0049 23.7 7.4 35 39-76 88-122 (327)
487 TIGR01082 murC UDP-N-acetylmur 32.6 3.1E+02 0.0067 24.5 8.5 11 68-78 58-68 (448)
488 cd00764 Eukaryotic_PFK Phospho 32.5 36 0.00078 32.9 2.5 49 64-112 474-536 (762)
489 KOG3363 Uncharacterized conser 32.4 1.9E+02 0.004 22.4 5.8 88 5-92 88-188 (196)
490 cd06283 PBP1_RegR_EndR_KdgR_li 32.2 1.8E+02 0.004 23.0 6.5 40 38-77 19-64 (267)
491 cd08176 LPO Lactadehyde:propan 32.2 2.3E+02 0.0051 24.7 7.5 62 25-87 29-103 (377)
492 PRK05294 carB carbamoyl phosph 31.8 1.5E+02 0.0033 30.0 6.9 35 23-57 553-597 (1066)
493 PTZ00463 histone H2B; Provisio 31.8 43 0.00093 24.2 2.2 26 197-222 40-65 (117)
494 KOG2862 Alanine-glyoxylate ami 31.4 3.5E+02 0.0076 23.5 8.2 59 23-82 91-156 (385)
495 PRK12311 rpsB 30S ribosomal pr 31.3 3.5E+02 0.0075 23.4 8.4 30 23-52 58-87 (326)
496 smart00427 H2B Histone H2B. 31.3 43 0.00093 23.1 2.1 25 197-221 13-37 (89)
497 cd06294 PBP1_ycjW_transcriptio 31.2 2.4E+02 0.0052 22.4 7.0 40 38-77 24-69 (270)
498 cd06278 PBP1_LacI_like_2 Ligan 31.1 2.3E+02 0.0049 22.4 6.9 39 39-77 20-63 (266)
499 PRK01710 murD UDP-N-acetylmura 30.8 3.9E+02 0.0084 24.0 8.8 32 24-56 14-45 (458)
500 PRK14194 bifunctional 5,10-met 30.6 1.6E+02 0.0036 25.1 6.0 56 21-77 156-211 (301)
No 1
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=5.8e-47 Score=292.01 Aligned_cols=189 Identities=53% Similarity=0.943 Sum_probs=171.3
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEEE
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 103 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlGI 103 (229)
+++||+|||||||+.++++.++++|.++.+++++..+.++++..++|+|||++||++|.+.+...+.++++..++|+|||
T Consensus 1 ~~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~~~pd~iviSPGPG~P~d~G~~~~~i~~~~~~~PiLGV 80 (191)
T COG0512 1 MMMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEALKPDAIVISPGPGTPKDAGISLELIRRFAGRIPILGV 80 (191)
T ss_pred CceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhhcCCCEEEEcCCCCChHHcchHHHHHHHhcCCCCEEEE
Confidence 36899999999999999999999999999999886777778877899999999999999999888999888778999999
Q ss_pred ehhHHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccCCCCCCeEEEEEcCCC-ce
Q 027062 104 CMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDG-LI 182 (229)
Q Consensus 104 C~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~~~~la~~~~~-~i 182 (229)
|+|||.|++++||+|.+.+ ...||+...+... .+.+|+++|++|.+..||+..+.++.+ |+.++++|+++++ .|
T Consensus 81 CLGHQai~~~fGg~V~~a~-~~~HGK~s~i~h~---g~~iF~glp~~f~v~RYHSLvv~~~~l-P~~l~vtA~~~d~~~I 155 (191)
T COG0512 81 CLGHQAIAEAFGGKVVRAK-EPMHGKTSIITHD---GSGLFAGLPNPFTVTRYHSLVVDPETL-PEELEVTAESEDGGVI 155 (191)
T ss_pred CccHHHHHHHhCCEEEecC-CCcCCeeeeeecC---CcccccCCCCCCEEEeeEEEEecCCCC-CCceEEEEEeCCCCEE
Confidence 9999999999999999998 5679988744332 478999999999999999999987666 4899999998664 99
Q ss_pred EEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHH
Q 027062 183 MAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 218 (229)
Q Consensus 183 ~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~ 218 (229)
+|++|+++| ++|+|||||+..++.|.+|++||++.
T Consensus 156 Mai~h~~~p-i~gvQFHPESilT~~G~~il~Nfl~~ 190 (191)
T COG0512 156 MAVRHKKLP-IYGVQFHPESILTEYGHRILENFLRL 190 (191)
T ss_pred EEEeeCCCC-EEEEecCCccccccchHHHHHHHHhh
Confidence 999999998 99999999999999999999999975
No 2
>PLN02335 anthranilate synthase
Probab=100.00 E-value=1.3e-46 Score=304.74 Aligned_cols=205 Identities=88% Similarity=1.409 Sum_probs=179.2
Q ss_pred cCCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcE
Q 027062 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL 100 (229)
Q Consensus 21 ~~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~Pv 100 (229)
+....+|+|||++|+|+.+++++|+++|+++.+++++..+.+++...++|+|||+|||+++++.+...+.+++.+.++|+
T Consensus 15 ~~~~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~~~~~d~iVisgGPg~p~d~~~~~~~~~~~~~~~Pi 94 (222)
T PLN02335 15 SKQNGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPLVPL 94 (222)
T ss_pred cCccCcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHHhcCCCEEEEcCCCCChhhccchHHHHHHhCCCCCE
Confidence 34456899999999999999999999999999999875667777666899999999999999887767777777788999
Q ss_pred EEEehhHHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccCCCCCCeEEEEEcCCC
Q 027062 101 FGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDG 180 (229)
Q Consensus 101 lGIC~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~~~~la~~~~~ 180 (229)
||||+|||+|+.++||++.+.+.+..+|.+.++.......++||++++..+.++++|++.|+++.+++.+++++|+++++
T Consensus 95 LGIClG~QlLa~alGg~v~~~~~~~~~G~~~~v~~~~~~~~~Lf~~l~~~~~v~~~H~~~v~~~~lp~~~~~v~a~~~~~ 174 (222)
T PLN02335 95 FGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSPVHYDEKGEEGLFSGLPNPFTAGRYHSLVIEKDTFPSDELEVTAWTEDG 174 (222)
T ss_pred EEecHHHHHHHHHhCCEEEeCCCccccCceeeeEECCCCCChhhhCCCCCCEEEechhheEecccCCCCceEEEEEcCCC
Confidence 99999999999999999999876667888887776654457899999999999999999998766654459999999999
Q ss_pred ceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHhhh
Q 027062 181 LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKEAA 225 (229)
Q Consensus 181 ~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~~~~~~~~ 225 (229)
.+++++++++|++||+|||||+..+++|..||+||++.+.+++.+
T Consensus 175 ~v~ai~~~~~~~i~GvQfHPE~~~~~~g~~i~~nF~~~~~~~~~~ 219 (222)
T PLN02335 175 LIMAARHRKYKHIQGVQFHPESIITTEGKTIVRNFIKIIEKKESE 219 (222)
T ss_pred CEEEEEecCCCCEEEEEeCCCCCCChhHHHHHHHHHHHHHhhccc
Confidence 999999998877999999999998899999999999988765544
No 3
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=100.00 E-value=2e-45 Score=291.00 Aligned_cols=186 Identities=48% Similarity=0.890 Sum_probs=163.6
Q ss_pred eEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEEEeh
Q 027062 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 105 (229)
Q Consensus 26 ~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlGIC~ 105 (229)
|||+||++|+|+.+++++|++.|+++.++++++.+.++++..++|+|||+|||+++.+.+.....++.+..++|+||||+
T Consensus 1 ~il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iils~GPg~p~~~~~~~~~~~~~~~~~PiLGICl 80 (187)
T PRK08007 1 MILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDALKPQKIVISPGPCTPDEAGISLDVIRHYAGRLPILGVCL 80 (187)
T ss_pred CEEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcCCCEEEEcCCCCChHHCCccHHHHHHhcCCCCEEEECH
Confidence 49999999999999999999999999999988667788877789999999999999887666666666677899999999
Q ss_pred hHHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccCCCCCCeEEEEEcCCCceEEE
Q 027062 106 GLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAA 185 (229)
Q Consensus 106 G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~~~~la~~~~~~i~a~ 185 (229)
|||+|+.++||+|.+... .++|.+..+... .+.+|++++..+.++++|++.|++.. +|++++++|+++++.++|+
T Consensus 81 G~Q~la~a~Gg~v~~~~~-~~~g~~~~v~~~---~~~l~~~~~~~~~v~~~H~~~v~~~~-lp~~~~v~a~~~~~~i~a~ 155 (187)
T PRK08007 81 GHQAMAQAFGGKVVRAAK-VMHGKTSPITHN---GEGVFRGLANPLTVTRYHSLVVEPDS-LPACFEVTAWSETREIMGI 155 (187)
T ss_pred HHHHHHHHcCCEEEeCCC-cccCCceEEEEC---CCCcccCCCCCcEEEEcchhEEccCC-CCCCeEEEEEeCCCcEEEE
Confidence 999999999999999874 458877666543 45689999888999999999996434 4689999999999999999
Q ss_pred EeCCCCcEEEEeccCCCCCCCchHHHHHHHHH
Q 027062 186 RHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 217 (229)
Q Consensus 186 ~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~ 217 (229)
++++++ +||+|||||+..++.|..||+||++
T Consensus 156 ~~~~~~-i~GvQfHPE~~~t~~G~~il~nFl~ 186 (187)
T PRK08007 156 RHRQWD-LEGVQFHPESILSEQGHQLLANFLH 186 (187)
T ss_pred EeCCCC-EEEEEeCCcccCCcchHHHHHHHhh
Confidence 999877 9999999999888999999999985
No 4
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=100.00 E-value=5e-45 Score=290.17 Aligned_cols=190 Identities=49% Similarity=0.918 Sum_probs=166.0
Q ss_pred eEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEEEeh
Q 027062 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 105 (229)
Q Consensus 26 ~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlGIC~ 105 (229)
||||||++|+|+.+++++|+++|.++.+++.++.+.++++..++|||||+|||+++++.......++.+..++|+||||+
T Consensus 1 ~il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iIlsgGP~~p~~~~~~~~~i~~~~~~~PvLGICl 80 (195)
T PRK07649 1 MILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIENMKPDFLMISPGPCSPNEAGISMEVIRYFAGKIPIFGVCL 80 (195)
T ss_pred CEEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhhCCCCEEEECCCCCChHhCCCchHHHHHhcCCCCEEEEcH
Confidence 48999999999999999999999999999988667777776789999999999999987766666666667899999999
Q ss_pred hHHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccCCCCCCeEEEEEcCCCceEEE
Q 027062 106 GLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAA 185 (229)
Q Consensus 106 G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~~~~la~~~~~~i~a~ 185 (229)
|||+|+.++||+|.+.+. .++|.+..+... .+++|++++..+.+++||++.+.... +|++++++|+++++.++|+
T Consensus 81 G~Qlla~~lGg~V~~~~~-~~~G~~~~i~~~---~~~lf~~~~~~~~v~~~H~~~v~~~~-lp~~~~~~a~s~~~~v~a~ 155 (195)
T PRK07649 81 GHQSIAQVFGGEVVRAER-LMHGKTSLMHHD---GKTIFSDIPNPFTATRYHSLIVKKET-LPDCLEVTSWTEEGEIMAI 155 (195)
T ss_pred HHHHHHHHcCCEEeeCCC-cccCCeEEEEEC---CChhhcCCCCCCEEEEechheEeccc-CCCCeEEEEEcCCCcEEEE
Confidence 999999999999999874 567877655432 46799999999999999999985333 4689999999999999999
Q ss_pred EeCCCCcEEEEeccCCCCCCCchHHHHHHHHHHHHH
Q 027062 186 RHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVR 221 (229)
Q Consensus 186 ~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~~~~ 221 (229)
++++++ +||+|||||+..++.|..||+||++.+..
T Consensus 156 ~~~~~~-i~gvQFHPE~~~t~~g~~il~nfl~~~~~ 190 (195)
T PRK07649 156 RHKTLP-IEGVQFHPESIMTSHGKELLQNFIRKYSP 190 (195)
T ss_pred EECCCC-EEEEEECCCCCCCccHHHHHHHHHHHhHh
Confidence 999877 99999999998888999999999987653
No 5
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=100.00 E-value=6.8e-44 Score=282.56 Aligned_cols=186 Identities=49% Similarity=0.877 Sum_probs=161.0
Q ss_pred eEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEEEeh
Q 027062 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 105 (229)
Q Consensus 26 ~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlGIC~ 105 (229)
+||+||++|+|+.+++++|+++|+++.+++++..+.++++..++|||||+|||+++.+.....+.++++..++||||||+
T Consensus 1 ~il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iilsgGpg~p~~~~~~~~~i~~~~~~~PvLGIC~ 80 (188)
T TIGR00566 1 MVLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEALLPLLIVISPGPCTPNEAGISLEAIRHFAGKLPILGVCL 80 (188)
T ss_pred CEEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHhcCCCEEEEcCCCCChhhcchhHHHHHHhccCCCEEEECH
Confidence 49999999999999999999999999999987666788877789999999999999876555566665667899999999
Q ss_pred hHHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccCCCCCCeEEEEEcCCC-ceEE
Q 027062 106 GLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDG-LIMA 184 (229)
Q Consensus 106 G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~~~~la~~~~~-~i~a 184 (229)
|||+|+.++||+|.+.+ ..++|.+..+... .+.+|.++++.+.++++|++.+.++. ++++++++|+++++ .++|
T Consensus 81 G~Qll~~~~GG~v~~~~-~~~~g~~~~v~~~---~~~~~~~l~~~~~v~~~H~~~v~~~~-l~~~~~v~a~s~~~~~v~a 155 (188)
T TIGR00566 81 GHQAMGQAFGGDVVRAN-TVMHGKTSEIEHN---GAGIFRGLFNPLTATRYHSLVVEPET-LPTCFPVTAWEEENIEIMA 155 (188)
T ss_pred HHHHHHHHcCCEEeeCC-CccccceEEEEEC---CCccccCCCCCcEEEEcccceEeccc-CCCceEEEEEcCCCCEEEE
Confidence 99999999999999987 4568877766553 45688888878999999999996434 46789999999875 9999
Q ss_pred EEeCCCCcEEEEeccCCCCCCCchHHHHHHHHH
Q 027062 185 ARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 217 (229)
Q Consensus 185 ~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~ 217 (229)
+++++++ +||+|||||+..++.|.+||+||++
T Consensus 156 ~~~~~~~-i~gvQfHPE~~~t~~G~~il~nfl~ 187 (188)
T TIGR00566 156 IRHRDLP-LEGVQFHPESILSEQGHQLLANFLH 187 (188)
T ss_pred EEeCCCC-EEEEEeCCCccCCcccHHHHHHHHh
Confidence 9999987 9999999999889999999999985
No 6
>PRK05670 anthranilate synthase component II; Provisional
Probab=100.00 E-value=8.9e-44 Score=282.42 Aligned_cols=188 Identities=56% Similarity=1.015 Sum_probs=161.5
Q ss_pred eEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEEEeh
Q 027062 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 105 (229)
Q Consensus 26 ~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlGIC~ 105 (229)
||+|||++|+|+.+++++|+++|+++.+++++....++++..++|||||+|||+++.+.......++++..++|+||||+
T Consensus 1 ~iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglIlsgGpg~~~d~~~~~~~l~~~~~~~PvLGICl 80 (189)
T PRK05670 1 MILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEALNPDAIVLSPGPGTPAEAGISLELIREFAGKVPILGVCL 80 (189)
T ss_pred CEEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHHhCCCCEEEEcCCCCChHHcchHHHHHHHhcCCCCEEEECH
Confidence 49999999999999999999999999999987545566666679999999999999876666566666667899999999
Q ss_pred hHHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccCCCCCCeEEEEEcCCCceEEE
Q 027062 106 GLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAA 185 (229)
Q Consensus 106 G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~~~~la~~~~~~i~a~ 185 (229)
|||+|+.++||+|.+.+. ..+|.+..+.. ..+++|++++..+.++++|++.|.+.+ +|++++++|+++++.+||+
T Consensus 81 G~Qlla~alGg~v~~~~~-~~~g~~~~v~~---~~~~l~~~~~~~~~v~~~H~~~v~~~~-lp~~~~~la~s~~~~i~a~ 155 (189)
T PRK05670 81 GHQAIGEAFGGKVVRAKE-IMHGKTSPIEH---DGSGIFAGLPNPFTVTRYHSLVVDRES-LPDCLEVTAWTDDGEIMGV 155 (189)
T ss_pred HHHHHHHHhCCEEEecCC-cccCceeEEEe---CCCchhccCCCCcEEEcchhheecccc-CCCceEEEEEeCCCcEEEE
Confidence 999999999999999874 45776655542 257799999888999999999996433 4689999999999999999
Q ss_pred EeCCCCcEEEEeccCCCCCCCchHHHHHHHHHHH
Q 027062 186 RHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI 219 (229)
Q Consensus 186 ~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~~ 219 (229)
++++++ +||+|||||+..+++|.+||++|++.+
T Consensus 156 ~~~~~~-~~gvQfHPE~~~~~~g~~i~~~F~~~~ 188 (189)
T PRK05670 156 RHKELP-IYGVQFHPESILTEHGHKLLENFLELA 188 (189)
T ss_pred EECCCC-EEEEeeCCCcCCCcchHHHHHHHHHhh
Confidence 998877 999999999987889999999999864
No 7
>CHL00101 trpG anthranilate synthase component 2
Probab=100.00 E-value=1.1e-43 Score=281.85 Aligned_cols=188 Identities=57% Similarity=1.011 Sum_probs=160.6
Q ss_pred eEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEEEeh
Q 027062 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 105 (229)
Q Consensus 26 ~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlGIC~ 105 (229)
+|+|||++|+|+.+++++|++.|+++.+++.+..+.++++..++|||||+|||+++.+.......+..+..++|+||||+
T Consensus 1 ~iliid~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiiisgGpg~~~~~~~~~~i~~~~~~~~PiLGICl 80 (190)
T CHL00101 1 MILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIKNLNIRHIIISPGPGHPRDSGISLDVISSYAPYIPILGVCL 80 (190)
T ss_pred CEEEEECCCchHHHHHHHHHhcCCCEEEEECCCCCHHHHhhCCCCEEEECCCCCChHHCcchHHHHHHhcCCCcEEEEch
Confidence 49999999999999999999999999999987666777766689999999999999876544344444667899999999
Q ss_pred hHHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccCCCCCCeEEEEEcCCCceEEE
Q 027062 106 GLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAA 185 (229)
Q Consensus 106 G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~~~~la~~~~~~i~a~ 185 (229)
|||+|+.++||+|.+.+. .++|.+..+.. ..+++|.+++..+.++++|++.|+..++ |++++++|+++++.++|+
T Consensus 81 G~Qlla~~~Gg~V~~~~~-~~~g~~~~~~~---~~~~l~~~~~~~~~v~~~H~~~v~~~~l-p~~~~vla~s~~~~v~a~ 155 (190)
T CHL00101 81 GHQSIGYLFGGKIIKAPK-PMHGKTSKIYH---NHDDLFQGLPNPFTATRYHSLIIDPLNL-PSPLEITAWTEDGLIMAC 155 (190)
T ss_pred hHHHHHHHhCCEEEECCC-cccCceeeEee---CCcHhhccCCCceEEEcchhheeecccC-CCceEEEEEcCCCcEEEE
Confidence 999999999999999874 45887765543 2567999999999999999999964333 578999999999999999
Q ss_pred EeCCCCcEEEEeccCCCCCCCchHHHHHHHHHH
Q 027062 186 RHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 218 (229)
Q Consensus 186 ~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~ 218 (229)
++++++++||+|||||+..++.|.+||+||++.
T Consensus 156 ~~~~~~~i~gvQfHPE~~~~~~g~~l~~nf~~~ 188 (190)
T CHL00101 156 RHKKYKMLRGIQFHPESLLTTHGQQILRNFLSL 188 (190)
T ss_pred EeCCCCCEEEEEeCCccCCChhHHHHHHHHHhh
Confidence 999875599999999998888999999999874
No 8
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=100.00 E-value=3.2e-43 Score=279.65 Aligned_cols=186 Identities=47% Similarity=0.889 Sum_probs=159.5
Q ss_pred eEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEEEeh
Q 027062 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 105 (229)
Q Consensus 26 ~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlGIC~ 105 (229)
||||||++|+|+.++++.|++.|+++.+++++..+.++++++++|+|||+|||+++.+.+.....++.+.+++|+||||+
T Consensus 1 ~il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~iilsgGP~~~~~~~~~~~~i~~~~~~~PiLGIC~ 80 (191)
T PRK06774 1 MLLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQLAPSHLVISPGPCTPNEAGISLAVIRHFADKLPILGVCL 80 (191)
T ss_pred CEEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcCCCeEEEcCCCCChHhCCCchHHHHHhcCCCCEEEECH
Confidence 48999999999999999999999999999987677888887789999999999999988776666666777899999999
Q ss_pred hHHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccCCCCCCeEEEEEcCCC----c
Q 027062 106 GLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDG----L 181 (229)
Q Consensus 106 G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~~~~la~~~~~----~ 181 (229)
|||+|+.++||+|.+.+. .++|....+.. ..+++|++++..+.++++|++.+.... +++++.++|+++++ .
T Consensus 81 G~Qlla~~~GG~v~~~~~-~~~G~~~~~~~---~~~~lf~~l~~~~~v~~~Hs~~v~~~~-lp~~~~vlA~s~~d~~~~~ 155 (191)
T PRK06774 81 GHQALGQAFGARVVRARQ-VMHGKTSAICH---SGQGVFRGLNQPLTVTRYHSLVIAADS-LPGCFELTAWSERGGEMDE 155 (191)
T ss_pred HHHHHHHHhCCEEEeCCc-ceecceEEEEe---cCchhhcCCCCCcEEEEeCcceeeccC-CCCCeEEEEEeCCCCCcce
Confidence 999999999999999874 56776554432 256799999888999999999995333 46899999998743 4
Q ss_pred eEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHH
Q 027062 182 IMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 217 (229)
Q Consensus 182 i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~ 217 (229)
++++++++.+ +||+|||||+..++.|.+||+||++
T Consensus 156 i~~~~~~~~~-i~GvQfHPE~~~~~~G~~i~~nf~~ 190 (191)
T PRK06774 156 IMGIRHRTLP-LEGVQFHPESILSEQGHQLLDNFLK 190 (191)
T ss_pred EEEEEeCCCC-EEEEEECCCcCCCccHHHHHHHHhh
Confidence 7788888776 9999999999878899999999985
No 9
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=100.00 E-value=1.4e-42 Score=275.64 Aligned_cols=187 Identities=34% Similarity=0.625 Sum_probs=159.2
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEEE
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 103 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlGI 103 (229)
.|||+|||++|+|+.+++++|++.|.++.+++.++...++++ ++|+|||+||++++.+.+...+.+++...++|+|||
T Consensus 1 ~~~iliid~~dsf~~~i~~~l~~~g~~~~v~~~~~~~~~~l~--~~d~iIi~gGp~~~~~~~~~~~~i~~~~~~~PiLGI 78 (190)
T PRK06895 1 ATKLLIINNHDSFTFNLVDLIRKLGVPMQVVNVEDLDLDEVE--NFSHILISPGPDVPRAYPQLFAMLERYHQHKSILGV 78 (190)
T ss_pred CcEEEEEeCCCchHHHHHHHHHHcCCcEEEEECCccChhHhc--cCCEEEECCCCCChHHhhHHHHHHHHhcCCCCEEEE
Confidence 378999999999999999999999999999997644455555 579999999999775545555566666678999999
Q ss_pred ehhHHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccCCCCCCeEEEEEcCCCceE
Q 027062 104 CMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIM 183 (229)
Q Consensus 104 C~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~~~~la~~~~~~i~ 183 (229)
|+|||+|+.++||+|.+.+. ..+|.+..+... .++++|++++..+.++++|++.+.+.++ ++++.+++.++++.++
T Consensus 79 ClG~Qlla~~~Gg~V~~~~~-~~~g~~~~v~~~--~~~~l~~~~~~~~~v~~~Hs~~v~~~~l-p~~l~~~a~~~~~~i~ 154 (190)
T PRK06895 79 CLGHQTLCEFFGGELYNLNN-VRHGQQRPLKVR--SNSPLFDGLPEEFNIGLYHSWAVSEENF-PTPLEITAVCDENVVM 154 (190)
T ss_pred cHHHHHHHHHhCCeEeecCC-CccCceEEEEEC--CCChhhhcCCCceEEEcchhheeccccc-CCCeEEEEECCCCcEE
Confidence 99999999999999998763 568877666543 3688999999999999999999975344 5789999999999999
Q ss_pred EEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHH
Q 027062 184 AARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 217 (229)
Q Consensus 184 a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~ 217 (229)
+++++++| +||+|||||+..++.|..|++||++
T Consensus 155 a~~~~~~p-i~GvQFHPE~~~~~~g~~il~nf~~ 187 (190)
T PRK06895 155 AMQHKTLP-IYGVQFHPESYISEFGEQILRNWLA 187 (190)
T ss_pred EEEECCCC-EEEEEeCCCcCCCcchHHHHHHHHh
Confidence 99999987 9999999999878999999999986
No 10
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=100.00 E-value=1.8e-42 Score=275.68 Aligned_cols=187 Identities=46% Similarity=0.857 Sum_probs=159.0
Q ss_pred eEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEEEeh
Q 027062 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 105 (229)
Q Consensus 26 ~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlGIC~ 105 (229)
+||+||++|+|+.+++++|+++|+++.+++++..+.+++...++|++|++|||+++++...+...++.+..++|+||||+
T Consensus 1 ~il~id~~dsft~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~iilsgGp~~~~~~~~~~~~i~~~~~~~PiLGICl 80 (193)
T PRK08857 1 MLLMIDNYDSFTYNLYQYFCELGAQVKVVRNDEIDIDGIEALNPTHLVISPGPCTPNEAGISLQAIEHFAGKLPILGVCL 80 (193)
T ss_pred CEEEEECCCCcHHHHHHHHHHCCCcEEEEECCCCCHHHHhhCCCCEEEEeCCCCChHHCcchHHHHHHhcCCCCEEEEcH
Confidence 49999999999999999999999999999987555666666679999999999999887766666666778899999999
Q ss_pred hHHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccCCCCCCeEEEEEcC--C---C
Q 027062 106 GLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTE--D---G 180 (229)
Q Consensus 106 G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~~~~la~~~--~---~ 180 (229)
|||+|+.++||+|.+.+. .++|....+... .+++|.+++..+.+++||++.+...++ |++++++|+++ + +
T Consensus 81 G~Qlia~a~Gg~v~~~~~-~~~G~~~~~~~~---~~~l~~~~~~~~~v~~~H~~~v~~~~l-p~~~~v~a~s~~~~~~~~ 155 (193)
T PRK08857 81 GHQAIAQVFGGQVVRARQ-VMHGKTSPIRHT---GRSVFKGLNNPLTVTRYHSLVVKNDTL-PECFELTAWTELEDGSMD 155 (193)
T ss_pred HHHHHHHHhCCEEEeCCC-ceeCceEEEEEC---CCcccccCCCccEEEEccEEEEEcCCC-CCCeEEEEEecCcCCCcc
Confidence 999999999999999874 457765444432 467999999889999999999964344 68999999886 3 3
Q ss_pred ceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHH
Q 027062 181 LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 218 (229)
Q Consensus 181 ~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~ 218 (229)
.+++++++++| +||+|||||+..++.|..||+||++.
T Consensus 156 ~i~~~~~~~~p-i~gvQfHPE~~~t~~g~~i~~nFl~~ 192 (193)
T PRK08857 156 EIMGFQHKTLP-IEAVQFHPESIKTEQGHQLLANFLAR 192 (193)
T ss_pred eEEEEEeCCCC-EEEEeeCCCcCCCcchHHHHHHHHhh
Confidence 68999999987 99999999999889999999999863
No 11
>PRK05637 anthranilate synthase component II; Provisional
Probab=100.00 E-value=6.3e-42 Score=274.49 Aligned_cols=190 Identities=34% Similarity=0.601 Sum_probs=157.9
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEEEe
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlGIC 104 (229)
.+|++||++|+|+.++++.|+++|+++++++++ .+.+++...++|+|||+|||+++++.....+.+.....++||||||
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~-~~~~~l~~~~~~~iIlsgGPg~~~d~~~~~~li~~~~~~~PiLGIC 80 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNT-VPVEEILAANPDLICLSPGPGHPRDAGNMMALIDRTLGQIPLLGIC 80 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCC-CCHHHHHhcCCCEEEEeCCCCCHHHhhHHHHHHHHHhCCCCEEEEc
Confidence 579999999999999999999999999999986 5667777778999999999999987755444554444579999999
Q ss_pred hhHHHHHHHhCCeeeecCCccccCccceeEecc-CCCCcccccCC------------CceeeeeeeceeeeccCCCCCCe
Q 027062 105 MGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDE-KGEDGLLAGLS------------NPFTAGRYHSLVIEKESFPSDAL 171 (229)
Q Consensus 105 ~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~-~~~~~l~~~l~------------~~~~~~~~H~~~v~~~~l~~~~~ 171 (229)
+|||+|+.++||+|.+.. +++|.+..+..+. ...+++|.+++ ..+.++++|++.|.. +|+++
T Consensus 81 lG~Qlla~alGG~V~~~~--~~~G~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~V~~~H~~~v~~---lp~~~ 155 (208)
T PRK05637 81 LGFQALLEHHGGKVEPCG--PVHGTTDNMILTDAGVQSPVFAGLATDVEPDHPEIPGRKVPIARYHSLGCVV---APDGM 155 (208)
T ss_pred HHHHHHHHHcCCeeccCC--cccceEEEeEECCCCCCCcccCCCCcccccccccccCCceEEEEechhhhhc---CCCCe
Confidence 999999999999999764 4577665554432 23567888775 358899999999976 67999
Q ss_pred EEEEEcCC--C-ceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHHHHH
Q 027062 172 EVTAWTED--G-LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVR 221 (229)
Q Consensus 172 ~~la~~~~--~-~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~~~~ 221 (229)
+++|++++ | .++++++.+.+ +||+|||||+.+++.|..||+||++.+..
T Consensus 156 ~vlA~s~~~~~~v~~a~~~~~~~-~~GvQfHPE~~~T~~G~~il~nfl~~~~~ 207 (208)
T PRK05637 156 ESLGTCSSEIGPVIMAAETTDGK-AIGLQFHPESVLSPTGPIILSRCVEQLLA 207 (208)
T ss_pred EEEEEecCCCCCEEEEEEECCCC-EEEEEeCCccCcCCCHHHHHHHHHHHHhc
Confidence 99999765 4 46788888876 99999999999999999999999988753
No 12
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=100.00 E-value=5.3e-41 Score=250.07 Aligned_cols=204 Identities=86% Similarity=1.403 Sum_probs=189.2
Q ss_pred ccccCCCceEEEEECCCchhHHHHHHH-HHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCC
Q 027062 18 KKSKNNKNPIIVIDNYDSFTYNLCQYM-GELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGP 96 (229)
Q Consensus 18 ~~~~~~~~~ilvid~~~~~~~~~~~~l-~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~ 96 (229)
+.+......|.+||+||+|+.++.+.| -+.|+.+.++++|+.+.++|+.+++++++|++||+.|.|.+-..+.+++++.
T Consensus 12 A~~~~~n~piv~IDNYDSFT~Nv~qYL~~e~g~~~~VyRNDeiTV~El~~~NP~~LliSPGPG~P~DsGIs~~~i~~f~~ 91 (223)
T KOG0026|consen 12 ANSSKQNGPIIVIDNYDSFTYNLCQYLMGELGCHFEVYRNDELTVEELKRKNPRGLLISPGPGTPQDSGISLQTVLELGP 91 (223)
T ss_pred hccccccCCEEEEecccchhHHHHHHhhhccCccEEEEecCcccHHHHhhcCCCeEEecCCCCCCccccchHHHHHHhCC
Confidence 355556678999999999999999998 6789999999999999999999999999999999999988888999999999
Q ss_pred CCcEEEEehhHHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccCCCCCCeEEEEE
Q 027062 97 TVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAW 176 (229)
Q Consensus 97 ~~PvlGIC~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~~~~la~ 176 (229)
.+|+||||+|.|.|.+++||+|.+.+.+..||...++..+...+..+|+++|..+.+-.+|+.....++++.+.+.++|+
T Consensus 92 ~iP~fGvCMGlQCi~e~fGGkv~~a~~~i~HGK~S~i~~D~~~~~G~f~g~~q~~~V~RYHSLa~~~sSlP~d~L~VTaw 171 (223)
T KOG0026|consen 92 LVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSMVHYDEKGEEGLFSGLSNPFIVGRYHSLVIEKDSFPSDELEVTAW 171 (223)
T ss_pred CCceeeeehhhhhhhhhhCcEEeccCcceeeccccccccCCccccccccCCCCCeEEEeeeeeeeecccCCccceeeeEe
Confidence 99999999999999999999999998778899999888877667889999999999999999999988888789999999
Q ss_pred cCCCceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHHHHH
Q 027062 177 TEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVR 221 (229)
Q Consensus 177 ~~~~~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~~~~ 221 (229)
++++.|++.+|+.|.++-|+|||||...+++|+.+++||++....
T Consensus 172 TEnG~iMgaRHkKY~~ieGVQfHPESIlteeGk~~irNflni~~~ 216 (223)
T KOG0026|consen 172 TEDGLVMAARHRKYKHIQGVQFHPESIITTEGKTIVRNFIKIVEK 216 (223)
T ss_pred ccCcEEEeeeccccccccceeecchhhhhhhhHHHHHHHHHhccc
Confidence 999999999999998899999999999999999999999987653
No 13
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=100.00 E-value=1.5e-40 Score=262.96 Aligned_cols=182 Identities=58% Similarity=0.966 Sum_probs=152.4
Q ss_pred EEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEEEehh
Q 027062 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMG 106 (229)
Q Consensus 27 ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlGIC~G 106 (229)
|+|||++++|..++.++|+++|+++.+++++.......+..++||||++||++++.+.......+..+.+++|+||||+|
T Consensus 1 il~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~dgvil~gG~~~~~~~~~~~~i~~~~~~~~PvlGIC~G 80 (184)
T cd01743 1 ILLIDNYDSFTYNLVQYLRELGAEVVVVRNDEITLEELELLNPDAIVISPGPGHPEDAGISLEIIRALAGKVPILGVCLG 80 (184)
T ss_pred CEEEeCCCccHHHHHHHHHHcCCceEEEeCCCCCHHHHhhcCCCEEEECCCCCCcccchhHHHHHHHHhcCCCEEEECHh
Confidence 68999999999999999999999999999874432211223789999999999987765443444445567999999999
Q ss_pred HHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccCCCCCC--eEEEEEcCCCceEE
Q 027062 107 LQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDA--LEVTAWTEDGLIMA 184 (229)
Q Consensus 107 ~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~--~~~la~~~~~~i~a 184 (229)
||+|+.++||+|.+.+. ..+|.+..+... ++++|++++..+.++++|++.|+. ++.+ ++++|.++++.++|
T Consensus 81 ~Qlla~~~Gg~v~~~~~-~~~g~~~~v~~~---~~~~~~~~~~~~~~~~~H~~~v~~---~~~~~~~~~la~~~~~~v~a 153 (184)
T cd01743 81 HQAIAEAFGGKVVRAPE-PMHGKTSEIHHD---GSGLFKGLPQPFTVGRYHSLVVDP---DPLPDLLEVTASTEDGVIMA 153 (184)
T ss_pred HHHHHHHhCCEEEeCCC-CCcCceeEEEEC---CCccccCCCCCcEEEeCcEEEEec---CCCCceEEEEEeCCCCeEEE
Confidence 99999999999999874 346666655543 567999999899999999999986 4455 99999999999999
Q ss_pred EEeCCCCcEEEEeccCCCCCCCchHHHHHHHH
Q 027062 185 ARHKKYKHLQGVQFHPESIITTEGKTIVRNFI 216 (229)
Q Consensus 185 ~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~ 216 (229)
++++++| +||+|||||+..++.|.+||+||+
T Consensus 154 ~~~~~~~-i~gvQfHPE~~~~~~g~~l~~~f~ 184 (184)
T cd01743 154 LRHRDLP-IYGVQFHPESILTEYGLRLLENFL 184 (184)
T ss_pred EEeCCCC-EEEEeeCCCcCCCcchHHHHHhhC
Confidence 9999877 999999999988899999999994
No 14
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=100.00 E-value=5.7e-40 Score=264.70 Aligned_cols=190 Identities=47% Similarity=0.822 Sum_probs=156.5
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhc--cCCCEEEECCCCCCCCCcchHHHHHHH-hCCCCcEE
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLF 101 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~--~~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~Pvl 101 (229)
|||+|+|++++++.++.++|++.|+++.+++++....++..+ .++|||||+|||+++.+.....+.+++ +++++|||
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~~~~~~~~~i~~~~~~~~PiL 80 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPERAGASIDMVRACAAAGTPLL 80 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChhhcchHHHHHHHHHhCCCCEE
Confidence 689999999999999999999999999999987422223322 268999999999998766544455554 35679999
Q ss_pred EEehhHHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccCCCCCCeEEEEEcCCCc
Q 027062 102 GVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGL 181 (229)
Q Consensus 102 GIC~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~~~~la~~~~~~ 181 (229)
|||+|||+|+.++||+|.+.+. .++|....+... .+.+|.+++..+.++++|++.+.+.. +|++++++|+++++.
T Consensus 81 GIC~G~Qlla~a~GG~v~~~~~-~~~g~~~~v~~~---~~~~~~~~~~~~~v~~~H~~~v~~~~-lp~~~~vla~s~~~~ 155 (214)
T PRK07765 81 GVCLGHQAIGVAFGATVDRAPE-LLHGKTSSVHHT---GVGVLAGLPDPFTATRYHSLTILPET-LPAELEVTARTDSGV 155 (214)
T ss_pred EEccCHHHHHHHhCCEEeeCCC-CccCceeEEEEC---CCccccCCCCccEEEecchheEeccc-CCCceEEEEEcCCCc
Confidence 9999999999999999999874 346665555543 34588888888999999999996433 458999999999999
Q ss_pred eEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHHHH
Q 027062 182 IMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 220 (229)
Q Consensus 182 i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~~~ 220 (229)
+||+++++.+ +||+|||||+..+..|..++++|+..|.
T Consensus 156 vqa~~~~~~~-i~gvQfHPE~~~t~~g~~~l~~f~~~~~ 193 (214)
T PRK07765 156 IMAVRHRELP-IHGVQFHPESVLTEGGHRMLANWLTVCG 193 (214)
T ss_pred EEEEEeCCCC-EEEEeeCCCcccCcchHHHHHHHHHHhc
Confidence 9999999876 9999999999888899999999998764
No 15
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=100.00 E-value=4.1e-40 Score=261.25 Aligned_cols=184 Identities=28% Similarity=0.467 Sum_probs=154.0
Q ss_pred EEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHH-hCCCCcEEEEeh
Q 027062 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCM 105 (229)
Q Consensus 27 ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PvlGIC~ 105 (229)
|+|||+++++..++.+++++.|+++.+++++ .+.+++...++|||||+||++++++.... ..++. ++.++|+||||+
T Consensus 1 i~iiD~g~~~~~~l~~~l~~~g~~~~~~~~~-~~~~~~~~~~~~glii~Gg~~~~~~~~~~-~~i~~~~~~~~PilGIC~ 78 (188)
T TIGR00888 1 ILVLDFGSQYTQLIARRLRELGVYSELVPNT-TPLEEIREKNPKGIILSGGPSSVYAENAP-RADEKIFELGVPVLGICY 78 (188)
T ss_pred CEEEECCchHHHHHHHHHHHcCCEEEEEeCC-CCHHHHhhcCCCEEEECCCCCCcCcCCch-HHHHHHHhCCCCEEEECH
Confidence 6899999999999999999999999999987 45677776667799999999998865432 22332 356799999999
Q ss_pred hHHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccCCCCCCeEEEEEcCCCceEEE
Q 027062 106 GLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAA 185 (229)
Q Consensus 106 G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~~~~la~~~~~~i~a~ 185 (229)
|||+|+.++||+|.+.+. .+.|. ..+.+.. .++||.++++.+.++++|++.+.. ++++++++|+++++.++++
T Consensus 79 G~Qll~~~lgg~v~~~~~-~~~g~-~~v~~~~--~~~l~~~~~~~~~~~~~H~~~v~~---l~~~~~vla~~~~~~v~a~ 151 (188)
T TIGR00888 79 GMQLMAKQLGGEVGRAEK-REYGK-AELEILD--EDDLFRGLPDESTVWMSHGDKVKE---LPEGFKVLATSDNCPVAAM 151 (188)
T ss_pred HHHHHHHhcCceEecCCC-cccee-EEEEEec--CCHhhcCCCCCcEEEeEccceeec---CCCCCEEEEECCCCCeEEE
Confidence 999999999999998863 44553 4444433 568999999899999999999975 5789999999999999999
Q ss_pred EeCCCCcEEEEeccCCCCCCCchHHHHHHHHHHHH
Q 027062 186 RHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 220 (229)
Q Consensus 186 ~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~~~ 220 (229)
++++++ +||+|||||++.+++|.+||+||++.+.
T Consensus 152 ~~~~~~-~~g~QfHPE~~~~~~g~~i~~~f~~~~~ 185 (188)
T TIGR00888 152 AHEEKP-IYGVQFHPEVTHTEYGNELLENFVYDVC 185 (188)
T ss_pred EECCCC-EEEEeeCCccCCChhhHHHHHHHHHHhh
Confidence 999876 9999999999987889999999998544
No 16
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=100.00 E-value=3.6e-40 Score=261.32 Aligned_cols=186 Identities=31% Similarity=0.424 Sum_probs=156.3
Q ss_pred ceEEEEECCCchhHHHHHHHHHcC-CEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHH----HHHHHh-CCCC
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELG-YHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISL----QTVLEL-GPTV 98 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g-~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~----~~i~~~-~~~~ 98 (229)
++|+|+|+++++.+.+.+++++.| ...++.+++ .+.+++...++||+||+|||.+++++..|. ..|.+. ..++
T Consensus 2 ~~ilIld~g~q~~~li~r~~re~g~v~~e~~~~~-~~~~~~~~~~~~giIlsGgp~sv~~~~~w~~~~~~~i~~~~~p~~ 80 (198)
T COG0518 2 RKILILDFGGQYLGLIARRLRELGYVYSEIVPYT-GDAEELPLDSPDGIIISGGPMSVYDEDPWLPREKDLIKDAGVPGK 80 (198)
T ss_pred cEEEEEeCCCcHhHHHHHHHHHcCCceEEEEeCC-CCcccccccCCCEEEEcCCCCCCccccccchhHHHHHHHhCCCCC
Confidence 579999999999999999999999 777777766 566777777889999999999999887553 444444 3567
Q ss_pred cEEEEehhHHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCce-eeeeeeceeeeccCCCCCCeEEEEEc
Q 027062 99 PLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPF-TAGRYHSLVIEKESFPSDALEVTAWT 177 (229)
Q Consensus 99 PvlGIC~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~-~~~~~H~~~v~~~~l~~~~~~~la~~ 177 (229)
||||||+|||+||.++||+|.+.+. .+.|.. .+.... ..+++|++++..+ .++++|.|.+.. +|++++++|+|
T Consensus 81 pvLGIC~G~Ql~A~~lGg~V~~~~~-~E~G~~-~v~~~~-~~~~l~~gl~~~~~~v~~sH~D~v~~---lP~g~~vlA~s 154 (198)
T COG0518 81 PVLGICLGHQLLAKALGGKVERGPK-REIGWT-PVELTE-GDDPLFAGLPDLFTTVFMSHGDTVVE---LPEGAVVLASS 154 (198)
T ss_pred CEEEEChhHHHHHHHhCCEEeccCC-CccceE-EEEEec-CccccccCCccccCccccchhCcccc---CCCCCEEEecC
Confidence 8999999999999999999999974 566654 454443 3458999998888 599999999987 78999999999
Q ss_pred CCCceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHHHH
Q 027062 178 EDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 220 (229)
Q Consensus 178 ~~~~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~~~ 220 (229)
+.|+++||++. .+ +||+|||||+++ +.+..+++||...+.
T Consensus 155 ~~cp~qa~~~~-~~-~~gvQFHpEv~~-~~~~~~l~nf~~~i~ 194 (198)
T COG0518 155 ETCPNQAFRYG-KR-AYGVQFHPEVTH-EYGEALLENFAHEIC 194 (198)
T ss_pred CCChhhheecC-Cc-EEEEeeeeEEeH-HHHHHHHHHhhhhhc
Confidence 99999999998 44 999999999985 789999999996443
No 17
>PRK00758 GMP synthase subunit A; Validated
Probab=100.00 E-value=8.1e-39 Score=253.02 Aligned_cols=182 Identities=29% Similarity=0.443 Sum_probs=148.3
Q ss_pred eEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEEEeh
Q 027062 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 105 (229)
Q Consensus 26 ~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlGIC~ 105 (229)
+|+|||++++|..++.++++++|+++.+++++ .+.+++.+.. |||||+||+. ..+.....+.++ ..++||||||+
T Consensus 1 ~i~iid~~~~~~~~i~~~l~~~g~~~~~~~~~-~~~~~l~~~~-dgivi~Gg~~-~~~~~~~~~~l~--~~~~PilGIC~ 75 (184)
T PRK00758 1 KIVVVDNGGQYNHLIHRTLRYLGVDAKIIPNT-TPVEEIKAFE-DGLILSGGPD-IERAGNCPEYLK--ELDVPILGICL 75 (184)
T ss_pred CEEEEECCCchHHHHHHHHHHcCCcEEEEECC-CCHHHHhhcC-CEEEECCCCC-hhhccccHHHHH--hCCCCEEEEeH
Confidence 49999999999999999999999999999876 4556666332 9999999983 322222233333 34699999999
Q ss_pred hHHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccCCCCCCeEEEEEcCCCceEEE
Q 027062 106 GLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAA 185 (229)
Q Consensus 106 G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~~~~la~~~~~~i~a~ 185 (229)
|||+|+.++||+|.+.+. .++|.. .+... ..+++|.++++.+.++++|++.+.. ++++++++|+++++.++|+
T Consensus 76 G~Q~L~~a~Gg~v~~~~~-~~~g~~-~i~~~--~~~~l~~~~~~~~~~~~~H~~~v~~---l~~~~~~la~~~~~~v~a~ 148 (184)
T PRK00758 76 GHQLIAKAFGGEVGRGEY-GEYALV-EVEIL--DEDDILKGLPPEIRVWASHADEVKE---LPDGFEILARSDICEVEAM 148 (184)
T ss_pred HHHHHHHhcCcEEecCCC-ceeeeE-EEEEc--CCChhhhCCCCCcEEEeehhhhhhh---CCCCCEEEEECCCCCEEEE
Confidence 999999999999998863 445543 33333 2567899999999999999999975 6789999999999999999
Q ss_pred EeCCCCcEEEEeccCCCCCCCchHHHHHHHHHHHH
Q 027062 186 RHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 220 (229)
Q Consensus 186 ~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~~~ 220 (229)
++++++ +||+|||||+..++.|.+||++|++.+.
T Consensus 149 ~~~~~~-~~g~QfHPE~~~~~~g~~l~~~f~~~~~ 182 (184)
T PRK00758 149 KHKEKP-IYGVQFHPEVAHTEYGEEIFKNFLEICG 182 (184)
T ss_pred EECCCC-EEEEEcCCccCCCchHHHHHHHHHHHHc
Confidence 998876 9999999999888899999999997654
No 18
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=7.7e-39 Score=287.26 Aligned_cols=188 Identities=36% Similarity=0.654 Sum_probs=157.1
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCc---cCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEE
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDE---LTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF 101 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~---~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~Pvl 101 (229)
+||||||++|+|+.++++.|++.|.++.+++.+. ...+++...++++|||+|||+++.+.+.....+.++..++|||
T Consensus 2 ~~iLiIDn~dsft~nl~~~lr~~g~~v~V~~~~~~~~~~~~~l~~~~~~~IIlSpGPg~p~d~~~~~~i~~~~~~~iPIL 81 (531)
T PRK09522 2 ADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGVPSEAGCMPELLTRLRGKLPII 81 (531)
T ss_pred CeEEEEeCCChHHHHHHHHHHHCCCCEEEEECCCCCccCHHHHHhcCcCEEEEcCCCCChhhCCCCHHHHHHHhcCCCEE
Confidence 5899999999999999999999999999998652 2256666667899999999999987765434444455689999
Q ss_pred EEehhHHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccCCCCCCeEEEEEcCCCc
Q 027062 102 GVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGL 181 (229)
Q Consensus 102 GIC~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~~~~la~~~~~~ 181 (229)
|||+|||+|+.++||+|.+.+ ...+|....+.. .++++|.+++..+.+++||++.+.. +|++++++|+ +++.
T Consensus 82 GIClG~QlLa~a~GG~V~~~~-~~~~G~~~~i~~---~~~~lf~~~~~~~~v~~~Hs~~v~~---lP~~l~vlA~-sd~~ 153 (531)
T PRK09522 82 GICLGHQAIVEAYGGYVGQAG-EILHGKASSIEH---DGQAMFAGLTNPLPVARYHSLVGSN---IPAGLTINAH-FNGM 153 (531)
T ss_pred EEcHHHHHHHHhcCCEEEeCC-ceeeeeEEEEee---cCCccccCCCCCcEEEEehheeccc---CCCCcEEEEe-cCCC
Confidence 999999999999999999876 344665443332 2457999999999999999999975 6799999997 4788
Q ss_pred eEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHHHHH
Q 027062 182 IMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVR 221 (229)
Q Consensus 182 i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~~~~ 221 (229)
++++++.+.+ +||+|||||+.++++|..||+||++.+..
T Consensus 154 v~ai~~~~~~-i~GVQFHPEs~~T~~G~~il~NFl~~~~~ 192 (531)
T PRK09522 154 VMAVRHDADR-VCGFQFHPESILTTQGARLLEQTLAWAQQ 192 (531)
T ss_pred EEEEEECCCC-EEEEEecCccccCcchHHHHHHHHHHHhh
Confidence 9999998876 99999999999999999999999988753
No 19
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=100.00 E-value=8.9e-39 Score=252.15 Aligned_cols=179 Identities=32% Similarity=0.523 Sum_probs=148.0
Q ss_pred EEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc--hHHHHHHHhCCCCcEEEEe
Q 027062 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG--ISLQTVLELGPTVPLFGVC 104 (229)
Q Consensus 27 ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~--~~~~~i~~~~~~~PvlGIC 104 (229)
|+|||+++++..++.++|+++|+++.+++++. +.++.+..++|||||+||++++++.. .+.+.+.+ .++|+||||
T Consensus 1 i~~iD~g~~~~~~~~~~l~~~G~~~~~~~~~~-~~~~~~~~~~dgvIl~Gg~~~~~~~~~~~~~~~~~~--~~~PilGIC 77 (181)
T cd01742 1 ILILDFGSQYTHLIARRVRELGVYSEILPNTT-PLEEIKLKNPKGIILSGGPSSVYEEDAPRVDPEIFE--LGVPVLGIC 77 (181)
T ss_pred CEEEECCCchHHHHHHHHHhcCceEEEecCCC-ChhhhcccCCCEEEECCCcccccccccchhhHHHHh--cCCCEEEEc
Confidence 68999999999999999999999999999763 33333333789999999999887653 23344433 479999999
Q ss_pred hhHHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccCCCCCCeEEEEEcCCCceEE
Q 027062 105 MGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMA 184 (229)
Q Consensus 105 ~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~~~~la~~~~~~i~a 184 (229)
+|||+|+.++||+|.+.+. .+.|... +... ..+++|.+++..+.++++|++.+.. ++++++++|+++++.+++
T Consensus 78 ~G~Qll~~~~gg~v~~~~~-~~~G~~~-v~~~--~~~~l~~~~~~~~~~~~~H~~~v~~---l~~~~~~la~~~~~~i~a 150 (181)
T cd01742 78 YGMQLIAKALGGKVERGDK-REYGKAE-IEID--DSSPLFEGLPDEQTVWMSHGDEVVK---LPEGFKVIASSDNCPVAA 150 (181)
T ss_pred HHHHHHHHhcCCeEEeCCC-CcceEEE-EEec--CCChhhcCCCCceEEEcchhhhhhh---cCCCcEEEEeCCCCCEEE
Confidence 9999999999999999873 4555433 3332 3678999999889999999999975 678999999999999999
Q ss_pred EEeCCCCcEEEEeccCCCCCCCchHHHHHHHH
Q 027062 185 ARHKKYKHLQGVQFHPESIITTEGKTIVRNFI 216 (229)
Q Consensus 185 ~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~ 216 (229)
+++++++ +||+|||||++.+++|.+||+||+
T Consensus 151 ~~~~~~~-~~g~QfHPE~~~~~~g~~ll~~f~ 181 (181)
T cd01742 151 IANEEKK-IYGVQFHPEVTHTEKGKEILKNFL 181 (181)
T ss_pred EEeCCCc-EEEEEcCCccccCcChHHHHHhhC
Confidence 9998766 999999999998789999999994
No 20
>PLN02347 GMP synthetase
Probab=100.00 E-value=3.4e-38 Score=282.85 Aligned_cols=191 Identities=22% Similarity=0.367 Sum_probs=160.6
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc--hHHHHHHH--hCCCCcE
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG--ISLQTVLE--LGPTVPL 100 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~--~~~~~i~~--~~~~~Pv 100 (229)
.+|+|||++++|.++++++++++|+.+++++++ .+.+++...++|||||+|||+++++.+ .+...+.+ ...++||
T Consensus 11 ~~IlIID~G~~~t~~I~r~lrelgv~~~v~p~~-~~~~~i~~~~~dgIILsGGP~sv~~~~~p~~~~~i~~~~~~~~iPI 89 (536)
T PLN02347 11 DVVLILDYGSQYTHLITRRVRELGVYSLLLSGT-ASLDRIASLNPRVVILSGGPHSVHVEGAPTVPEGFFDYCRERGVPV 89 (536)
T ss_pred CEEEEEECCCcHHHHHHHHHHHCCCeEEEEECC-CCHHHHhcCCCCEEEECCCCCcccccCCchhhHHHHHHHHhcCCcE
Confidence 479999999999999999999999999999987 667888767899999999999997653 23333332 2457999
Q ss_pred EEEehhHHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCc--eeeeeeeceeeeccCCCCCCeEEEEEcC
Q 027062 101 FGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNP--FTAGRYHSLVIEKESFPSDALEVTAWTE 178 (229)
Q Consensus 101 lGIC~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~--~~~~~~H~~~v~~~~l~~~~~~~la~~~ 178 (229)
||||+|||+|+.++||+|.+.. ..++|... +.+. .+++||++++.. +.++++|++.+.. +|++++++|+++
T Consensus 90 LGIClG~QlLa~alGG~V~~~~-~~e~G~~~-v~i~--~~~~Lf~~l~~~~~~~v~~~Hsd~V~~---lP~g~~vlA~s~ 162 (536)
T PLN02347 90 LGICYGMQLIVQKLGGEVKPGE-KQEYGRME-IRVV--CGSQLFGDLPSGETQTVWMSHGDEAVK---LPEGFEVVAKSV 162 (536)
T ss_pred EEECHHHHHHHHHcCCEEEecC-CcccceEE-EEEc--CCChhhhcCCCCceEEEEEEEEEEeee---CCCCCEEEEEeC
Confidence 9999999999999999999886 45676544 4332 357899999876 8899999999976 678999999999
Q ss_pred CCceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHhh
Q 027062 179 DGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKEA 224 (229)
Q Consensus 179 ~~~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~~~~~~~ 224 (229)
+|.++|+++.+.+ +||+|||||+++++.|..||+||+..++..+.
T Consensus 163 ~~~iaai~~~~~~-i~GvQFHPE~~~t~~G~~iL~NFl~~ic~~~~ 207 (536)
T PLN02347 163 QGAVVAIENRERR-IYGLQYHPEVTHSPKGMETLRHFLFDVCGVTA 207 (536)
T ss_pred CCcEEEEEECCCC-EEEEEccCCCCccchHHHHHHHHHHHHhCcCC
Confidence 9999999998876 99999999999999999999999987775543
No 21
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=5.4e-38 Score=283.37 Aligned_cols=189 Identities=53% Similarity=0.914 Sum_probs=162.3
Q ss_pred eEEEEECCCchhHHHHHHHHHcCCE-EEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEEEe
Q 027062 26 PIIVIDNYDSFTYNLCQYMGELGYH-FEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (229)
Q Consensus 26 ~ilvid~~~~~~~~~~~~l~~~g~~-~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlGIC 104 (229)
+|||||++|+|+.++++.|++.|.+ +.+++.++.+.+++...++|||||+|||+++.+.+...+.++.+..++||||||
T Consensus 1 ~il~idn~dsft~nl~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~d~vIlsgGP~~p~~~~~~~~li~~~~~~~PvLGIC 80 (534)
T PRK14607 1 MIILIDNYDSFTYNIYQYIGELGPEEIEVVRNDEITIEEIEALNPSHIVISPGPGRPEEAGISVEVIRHFSGKVPILGVC 80 (534)
T ss_pred CEEEEECchhHHHHHHHHHHHcCCCeEEEECCCCCCHHHHHhcCCCEEEECCCCCChhhCCccHHHHHHhhcCCCEEEEc
Confidence 5999999999999999999999996 777766656778887678999999999999987766556565566789999999
Q ss_pred hhHHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccCCCCCCeEEEEEcCCCceEE
Q 027062 105 MGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMA 184 (229)
Q Consensus 105 ~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~~~~la~~~~~~i~a 184 (229)
+|||+|+.++||+|.+... .++|....+... .+.+|.+++..+.++++|++.+.... +|++++++|+++++.+++
T Consensus 81 lG~QlLa~a~Gg~V~~~~~-~~~G~~~~v~~~---~~~lf~~~~~~~~v~~~Hs~~v~~~~-lp~~~~vlA~s~d~~i~a 155 (534)
T PRK14607 81 LGHQAIGYAFGGKIVHAKR-ILHGKTSPIDHN---GKGLFRGIPNPTVATRYHSLVVEEAS-LPECLEVTAKSDDGEIMG 155 (534)
T ss_pred HHHHHHHHHcCCeEecCCc-cccCCceeEEEC---CCcchhcCCCCcEEeeccchheeccc-CCCCeEEEEEcCCCCEEE
Confidence 9999999999999999874 457776665543 45689999888999999999986433 468999999999999999
Q ss_pred EEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHHHH
Q 027062 185 ARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 220 (229)
Q Consensus 185 ~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~~~ 220 (229)
++++++| +||+|||||+..+++|..||+||++.+.
T Consensus 156 ~~~~~~p-i~GvQFHPE~~~t~~g~~i~~nFl~~~~ 190 (534)
T PRK14607 156 IRHKEHP-IFGVQFHPESILTEEGKRILKNFLNYQR 190 (534)
T ss_pred EEECCCC-EEEEEeCCCCCCChhHHHHHHHHHHHhh
Confidence 9999987 9999999999888899999999999764
No 22
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=100.00 E-value=4.9e-38 Score=250.10 Aligned_cols=187 Identities=38% Similarity=0.597 Sum_probs=152.9
Q ss_pred EEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHH--hccCCCEEEECCCCCCCCCcchHHHHHHH-hCCCCcEEEEe
Q 027062 28 IVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEEL--KRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVC 104 (229)
Q Consensus 28 lvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l--~~~~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PvlGIC 104 (229)
||||+++++..++.+++++.|.++++++++. +..+. +..++|||||+||++++++.......++. .++++|+||||
T Consensus 1 lviD~~~~~~~~l~~~l~~~~~~~~v~~~~~-~~~~~~~~~~~~d~iii~Gg~~~~~d~~~~~~~i~~~~~~~~PilGIC 79 (192)
T PF00117_consen 1 LVIDNGDSFTHSLVRALRELGIDVEVVRVDS-DFEEPLEDLDDYDGIIISGGPGSPYDIEGLIELIREARERKIPILGIC 79 (192)
T ss_dssp EEEESSHTTHHHHHHHHHHTTEEEEEEETTG-GHHHHHHHTTTSSEEEEECESSSTTSHHHHHHHHHHHHHTTSEEEEET
T ss_pred CEEeCCHHHHHHHHHHHHHCCCeEEEEECCC-chhhhhhhhcCCCEEEECCcCCccccccccccccccccccceEEEEEe
Confidence 6999999999999999999999999999874 32332 23478999999999999984444444443 34689999999
Q ss_pred hhHHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccCCCCCCeEEEEEcCCC-ceE
Q 027062 105 MGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDG-LIM 183 (229)
Q Consensus 105 ~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~~~~la~~~~~-~i~ 183 (229)
+|||+|+.++||+|.+.+....+|....+.... .+++|.++++.+.++++|++.|.+..++|++++++|+++++ .++
T Consensus 80 ~G~Q~la~~~G~~v~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~H~~~v~~~~~~p~~~~~la~s~~~~~~~ 157 (192)
T PF00117_consen 80 LGHQILAHALGGKVVPSPEKPHHGGNIPISETP--EDPLFYGLPESFKAYQYHSDAVNPDDLLPEGFEVLASSSDGCPIQ 157 (192)
T ss_dssp HHHHHHHHHTTHEEEEEESEEEEEEEEEEEEEE--EHGGGTTSTSEEEEEEEECEEEEEGHHHHTTEEEEEEETTTTEEE
T ss_pred ehhhhhHHhcCCccccccccccccccccccccc--ccccccccccccccccccceeeecccccccccccccccccccccc
Confidence 999999999999999876334466555444432 25899999999999999999998533346899999999765 899
Q ss_pred EEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHH
Q 027062 184 AARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 218 (229)
Q Consensus 184 a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~ 218 (229)
++.+.++| +||+|||||++.+..+..+++||+-.
T Consensus 158 ~~~~~~~~-i~g~QfHPE~~~~~~~~~~l~nf~~~ 191 (192)
T PF00117_consen 158 AIRHKDNP-IYGVQFHPEFSSSPGGPQLLKNFFLK 191 (192)
T ss_dssp EEEECTTS-EEEESSBTTSTTSTTHHHHHHHHHHH
T ss_pred cccccccE-EEEEecCCcCCCCCCcchhhhheeEe
Confidence 99999986 99999999999888899999999754
No 23
>PRK00074 guaA GMP synthase; Reviewed
Probab=100.00 E-value=1.6e-37 Score=278.87 Aligned_cols=186 Identities=28% Similarity=0.486 Sum_probs=158.1
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcch--HHHHHHHhCCCCcEEE
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI--SLQTVLELGPTVPLFG 102 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~--~~~~i~~~~~~~PvlG 102 (229)
.+|+|||++++|.+.+.++++++|+.+++++++ .+.++++..++|||||+||+.++++... ..+.+. +.++||||
T Consensus 4 ~~i~vlD~Gsq~~~li~r~lrelg~~~~v~p~~-~~~~~l~~~~~dgIIlsGGp~sv~~~~~p~~~~~i~--~~~~PvLG 80 (511)
T PRK00074 4 DKILILDFGSQYTQLIARRVRELGVYSEIVPYD-ISAEEIRAFNPKGIILSGGPASVYEEGAPRADPEIF--ELGVPVLG 80 (511)
T ss_pred CEEEEEECCCCcHHHHHHHHHHCCCeEEEEECC-CCHHHHhccCCCEEEECCCCcccccCCCccccHHHH--hCCCCEEE
Confidence 579999999999999999999999999999876 5567887778899999999999876542 233333 35799999
Q ss_pred EehhHHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccCCCCCCeEEEEEcCCCce
Q 027062 103 VCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLI 182 (229)
Q Consensus 103 IC~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~~~~la~~~~~~i 182 (229)
||+|||+|+.++||+|.+.. ..+.|.. .+.+.. +++||++++..+.++++|+|.|.. +|++++++|+++++.+
T Consensus 81 IC~G~QlLa~~lGG~V~~~~-~~e~G~~-~i~i~~--~~~Lf~~l~~~~~v~~~H~d~V~~---lp~g~~vlA~s~~~~v 153 (511)
T PRK00074 81 ICYGMQLMAHQLGGKVERAG-KREYGRA-ELEVDN--DSPLFKGLPEEQDVWMSHGDKVTE---LPEGFKVIASTENCPI 153 (511)
T ss_pred ECHHHHHHHHHhCCeEEecC-CcccceE-EEEEcC--CChhhhcCCCceEEEEECCeEEEe---cCCCcEEEEEeCCCCE
Confidence 99999999999999999986 3556643 344432 568999998889999999999976 6799999999999999
Q ss_pred EEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHHHHH
Q 027062 183 MAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVR 221 (229)
Q Consensus 183 ~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~~~~ 221 (229)
+++++.+.+ +||+|||||+++++.|..||+||+..++.
T Consensus 154 ~ai~~~~~~-i~GvQFHPE~~~t~~G~~il~nFl~~i~~ 191 (511)
T PRK00074 154 AAIANEERK-FYGVQFHPEVTHTPQGKKLLENFVFDICG 191 (511)
T ss_pred EEEEeCCCC-EEEEeCCCCcCCchhHHHHHHHHHHHhcC
Confidence 999988766 99999999999989999999999966653
No 24
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=100.00 E-value=1.4e-36 Score=282.99 Aligned_cols=193 Identities=38% Similarity=0.610 Sum_probs=163.6
Q ss_pred CceEEEEECCCchhHHHHHHHHHc-CCEEEEEeCCccCHHHHhc-----cCCCEEEECCCCCCCCCcch---HHHHHHHh
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYRNDELTVEELKR-----KNPRGVLISPGPGAPQDSGI---SLQTVLEL 94 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~-g~~~~v~~~~~~~~~~l~~-----~~~dgiii~GG~~~~~~~~~---~~~~i~~~ 94 (229)
.||||+||+||+|+.++++.|++. |.++.++++++.+.+++.. .++|+|||+|||++|..... ..+.+.+.
T Consensus 81 ~~~iLlIDnyDSfTyNL~~~L~~~~g~~~~Vv~nd~~~~~~~~~~~~~~~~~d~IVlSPGPG~P~~~~d~Gi~~~~i~~~ 160 (918)
T PLN02889 81 FVRTLLIDNYDSYTYNIYQELSIVNGVPPVVVRNDEWTWEEVYHYLYEEKAFDNIVISPGPGSPTCPADIGICLRLLLEC 160 (918)
T ss_pred cceEEEEeCCCchHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHhhhhcccCCCEEEECCCCCCccchHHHHHHHHHHHHh
Confidence 378999999999999999999998 9999999988777777653 37899999999999864433 34555554
Q ss_pred CCCCcEEEEehhHHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCC----ceeeeeeeceeeeccCCCCCC
Q 027062 95 GPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSN----PFTAGRYHSLVIEKESFPSDA 170 (229)
Q Consensus 95 ~~~~PvlGIC~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~----~~~~~~~H~~~v~~~~l~~~~ 170 (229)
.++||||||+|||+|+.++||+|.+.+. .+||....+... .+.||.++|. .|.+..||+..|++..+ |++
T Consensus 161 -~~iPILGICLGhQ~i~~~~Gg~V~~~~~-~~HG~~s~I~h~---~~~lF~glp~~~~~~f~v~RYHSL~v~~~~l-P~~ 234 (918)
T PLN02889 161 -RDIPILGVCLGHQALGYVHGARIVHAPE-PVHGRLSEIEHN---GCRLFDDIPSGRNSGFKVVRYHSLVIDAESL-PKE 234 (918)
T ss_pred -CCCcEEEEcHHHHHHHHhcCceEEeCCC-ceeeeeeeEeec---CchhhcCCCcCCCCCceEEeCCCcccccCCC-CCc
Confidence 4699999999999999999999999984 679987766553 4679999986 59999999999975554 588
Q ss_pred eEEEEEcCC-----------------------------------------------------CceEEEEeCCCCcEEEEe
Q 027062 171 LEVTAWTED-----------------------------------------------------GLIMAARHKKYKHLQGVQ 197 (229)
Q Consensus 171 ~~~la~~~~-----------------------------------------------------~~i~a~~~~~~~~i~g~Q 197 (229)
++++|++++ +.++|++|+.+| +||+|
T Consensus 235 L~~~A~t~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viMairH~~~P-~~GVQ 313 (918)
T PLN02889 235 LVPIAWTSSSDTLSFLESQKSGLVPDAYESQIGQSGSSDPFSSKLKNGTSWPSSHSERMQNGKILMGIMHSTRP-HYGLQ 313 (918)
T ss_pred eEEEEEECCCcccccccccccccccccccccccccccccccccccccccccccccccccCCCCeeEEEEECCCc-eEEEE
Confidence 999998754 579999999998 99999
Q ss_pred ccCCCCCCCchHHHHHHHHHHHHHHh
Q 027062 198 FHPESIITTEGKTIVRNFIKMIVRKE 223 (229)
Q Consensus 198 fHPE~~~~~~~~~i~~~f~~~~~~~~ 223 (229)
||||...++.|..||+||++.+....
T Consensus 314 fHPESi~t~~G~~l~~nF~~~~~~~~ 339 (918)
T PLN02889 314 FHPESIATCYGRQIFKNFREITQDYW 339 (918)
T ss_pred eCCccccCchhHHHHHHHHHHHHHHh
Confidence 99999999999999999999988654
No 25
>PRK13566 anthranilate synthase; Provisional
Probab=100.00 E-value=2e-36 Score=279.22 Aligned_cols=194 Identities=41% Similarity=0.687 Sum_probs=161.7
Q ss_pred ccCCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHH-hCCCC
Q 027062 20 SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTV 98 (229)
Q Consensus 20 ~~~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~ 98 (229)
.....++|+|||+++++.+++.++|++.|+++.+++++ .+.+.++..++|||||+||++++.+... ...+.. +++++
T Consensus 522 ~~~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~-~~~~~~~~~~~DgVVLsgGpgsp~d~~~-~~lI~~a~~~~i 599 (720)
T PRK13566 522 AVGEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYG-FAEEMLDRVNPDLVVLSPGPGRPSDFDC-KATIDAALARNL 599 (720)
T ss_pred CCCCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECC-CChhHhhhcCCCEEEECCCCCChhhCCc-HHHHHHHHHCCC
Confidence 34456899999999999999999999999999999986 3445555558999999999999876442 233333 35679
Q ss_pred cEEEEehhHHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccCCCCCCeEEEEEcC
Q 027062 99 PLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTE 178 (229)
Q Consensus 99 PvlGIC~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~~~~la~~~ 178 (229)
||||||+|||+|+.++||+|.+.+. .++|.+..+.+.. .++||++++..+.++++|++.+....+ |++++++|.++
T Consensus 600 PILGIClG~QlLa~alGG~V~~~~~-~~~G~~~~V~v~~--~~~Lf~~lp~~~~v~~~Hs~~v~~~~L-p~~~~vlA~s~ 675 (720)
T PRK13566 600 PIFGVCLGLQAIVEAFGGELGQLAY-PMHGKPSRIRVRG--PGRLFSGLPEEFTVGRYHSLFADPETL-PDELLVTAETE 675 (720)
T ss_pred cEEEEehhHHHHHHHcCCEEEECCC-CccCCceEEEECC--CCchhhcCCCCCEEEEecceeEeeccC-CCceEEEEEeC
Confidence 9999999999999999999999874 4578777776653 468999999999999999988764344 58999999999
Q ss_pred CCceEEEEeCCCCcEEEEeccCCCCCC---CchHHHHHHHHHHHH
Q 027062 179 DGLIMAARHKKYKHLQGVQFHPESIIT---TEGKTIVRNFIKMIV 220 (229)
Q Consensus 179 ~~~i~a~~~~~~~~i~g~QfHPE~~~~---~~~~~i~~~f~~~~~ 220 (229)
++.++|++++++| +||+|||||+..+ +.|.+||+||++.+.
T Consensus 676 dg~V~ai~~~~~p-i~GVQFHPE~i~t~~~~~G~~ii~nfl~~~~ 719 (720)
T PRK13566 676 DGVIMAIEHKTLP-VAAVQFHPESIMTLGGDVGLRIIENVVRLLA 719 (720)
T ss_pred CCcEEEEEECCCC-EEEEeccCeeCCcCCchhHHHHHHHHHHHhh
Confidence 9999999999877 9999999999765 469999999998874
No 26
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=100.00 E-value=2.5e-36 Score=278.06 Aligned_cols=195 Identities=37% Similarity=0.645 Sum_probs=160.0
Q ss_pred cCCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHH-HhCCCCc
Q 027062 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVL-ELGPTVP 99 (229)
Q Consensus 21 ~~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~-~~~~~~P 99 (229)
.+..++|+|||+++++..++.++|++.|+++.+++++. ..+.++..++|+|||+|||+++.+.+. ...++ .+..++|
T Consensus 513 ~~~~~~IlVID~gds~~~~l~~~L~~~G~~v~vv~~~~-~~~~~~~~~~DgLILsgGPGsp~d~~~-~~~I~~~~~~~iP 590 (717)
T TIGR01815 513 GGEGRRILLVDHEDSFVHTLANYLRQTGASVTTLRHSH-AEAAFDERRPDLVVLSPGPGRPADFDV-AGTIDAALARGLP 590 (717)
T ss_pred CCCCCEEEEEECCChhHHHHHHHHHHCCCeEEEEECCC-ChhhhhhcCCCEEEEcCCCCCchhccc-HHHHHHHHHCCCC
Confidence 34578999999999999999999999999999998752 333334447899999999999986543 23333 2456799
Q ss_pred EEEEehhHHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccCCCCCCeEEEEEcCC
Q 027062 100 LFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTED 179 (229)
Q Consensus 100 vlGIC~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~~~~la~~~~ 179 (229)
+||||+|||+|+.++||+|.+.+. .++|.+..+.... .+++|.+++..+.+++||++.+....+ |++++++|++++
T Consensus 591 vLGICLG~QlLa~a~GG~V~~~~~-p~~G~~~~V~~~~--~~~Lf~~lp~~~~v~~~HS~~~~~~~L-P~~~~vlA~s~d 666 (717)
T TIGR01815 591 VFGVCLGLQGMVEAFGGALDVLPE-PVHGKASRIRVLG--PDALFAGLPERLTVGRYHSLFARRDRL-PAELTVTAESAD 666 (717)
T ss_pred EEEECHHHHHHhhhhCCEEEECCC-CeeCcceEEEECC--CChhhhcCCCCCEEEEECCCCcccccC-CCCeEEEEEeCC
Confidence 999999999999999999999874 5688776665543 568999999999999999988754334 589999999999
Q ss_pred CceEEEEeCCCCcEEEEeccCCCCCCC---chHHHHHHHHHHHHHH
Q 027062 180 GLIMAARHKKYKHLQGVQFHPESIITT---EGKTIVRNFIKMIVRK 222 (229)
Q Consensus 180 ~~i~a~~~~~~~~i~g~QfHPE~~~~~---~~~~i~~~f~~~~~~~ 222 (229)
+.++|+++++.+ +||+|||||+..++ .|..||+||+..+...
T Consensus 667 ~~v~Ai~~~~~~-i~GVQFHPEsi~T~sg~~G~~ilkNfl~~~~~~ 711 (717)
T TIGR01815 667 GLIMAIEHRRLP-LAAVQFHPESIMTLDGGAGLAMIGNVVDRLAAG 711 (717)
T ss_pred CcEEEEEECCCC-EEEEEeCCeeCCccCchhHHHHHHHHHHHHhhc
Confidence 999999999877 99999999997654 5899999999988643
No 27
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=100.00 E-value=2.7e-35 Score=252.17 Aligned_cols=182 Identities=29% Similarity=0.508 Sum_probs=147.7
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEEEe
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlGIC 104 (229)
.+|+|||+ +...+++++|+++|+++.+++++ .+.+++...++|||||+|||+++.+....++.++++-.++|+||||
T Consensus 174 ~~i~viD~--G~k~ni~~~L~~~G~~v~vvp~~-~~~~~i~~~~pDGIiLSgGPgdp~~~~~~i~~i~~~~~~~PILGIC 250 (358)
T TIGR01368 174 KRVVVIDF--GVKQNILRRLVKRGCEVTVVPYD-TDAEEIKKYNPDGIFLSNGPGDPAAVEPAIETIRKLLEKIPIFGIC 250 (358)
T ss_pred cEEEEEeC--CcHHHHHHHHHHCCCEEEEEcCC-CCHHHHHhhCCCEEEECCCCCCHHHHHHHHHHHHHHHcCCCEEEEC
Confidence 58999998 66789999999999999999987 4567777667899999999999876655556665543389999999
Q ss_pred hhHHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccCCCCCCeEEEEEc-CCCceE
Q 027062 105 MGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT-EDGLIM 183 (229)
Q Consensus 105 ~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~~~~la~~-~~~~i~ 183 (229)
+|||+|+.++||++.+.+.+ .+|.++++.... . ..-+.+.++|+++|+++.++.+++++++.+ .|+.++
T Consensus 251 lG~QlLa~a~Gg~v~kl~~g-h~G~nhpV~~~~--~-------~~v~itsqnH~~aV~~~~l~~~~l~vta~~~nDg~Ve 320 (358)
T TIGR01368 251 LGHQLLALAFGAKTYKMKFG-HRGGNHPVKDLI--T-------GRVEITSQNHGYAVDPDSLPAGDLEVTHVNLNDGTVE 320 (358)
T ss_pred HHHHHHHHHhCCceeccCcC-cCCCceeeEECC--C-------CcEEEeecCCCcEEcccccCCCceEEEEEECCCCcEE
Confidence 99999999999999998754 466665554321 1 122456678999998766655789999987 589999
Q ss_pred EEEeCCCCcEEEEeccCCCCCCC-chHHHHHHHHHHHH
Q 027062 184 AARHKKYKHLQGVQFHPESIITT-EGKTIVRNFIKMIV 220 (229)
Q Consensus 184 a~~~~~~~~i~g~QfHPE~~~~~-~~~~i~~~f~~~~~ 220 (229)
+++++++| +||+|||||+.+.+ +...||++|++.+.
T Consensus 321 gi~h~~~p-i~gVQfHPE~~~gp~d~~~lF~~F~~~~~ 357 (358)
T TIGR01368 321 GIRHKDLP-VFSVQYHPEASPGPHDTEYLFDEFIDLIK 357 (358)
T ss_pred EEEECCCC-EEEEEECCCCCCCCCChHHHHHHHHHHhh
Confidence 99999998 99999999998877 57889999998764
No 28
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=100.00 E-value=6.3e-35 Score=250.31 Aligned_cols=180 Identities=28% Similarity=0.496 Sum_probs=145.8
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHh-CCCCcEEE
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFG 102 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~-~~~~PvlG 102 (229)
..+|+|||+ +...+++++|+++|+++.+++++ .+.+++...++|||||+|||+++.+.....+.++++ ++++|+||
T Consensus 177 ~~~I~viD~--G~k~nivr~L~~~G~~v~vvp~~-~~~~~i~~~~~DGIvLSgGPgdp~~~~~~~~~i~~~~~~~~PilG 253 (360)
T PRK12564 177 KYKVVAIDF--GVKRNILRELAERGCRVTVVPAT-TTAEEILALNPDGVFLSNGPGDPAALDYAIEMIRELLEKKIPIFG 253 (360)
T ss_pred CCEEEEEeC--CcHHHHHHHHHHCCCEEEEEeCC-CCHHHHHhcCCCEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEE
Confidence 578999998 46779999999999999999987 466777766899999999999887654444555543 45799999
Q ss_pred EehhHHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccCCCCCCeEEEEEc-CCCc
Q 027062 103 VCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT-EDGL 181 (229)
Q Consensus 103 IC~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~~~~la~~-~~~~ 181 (229)
||+|||+|+.++||++.+.+.+ .+|..+++..... ...+.+.++|+++|+++++ ++++++++.+ +|+.
T Consensus 254 IClG~QlLa~a~Gg~v~kl~~g-h~G~~~pv~~~~~---------~~~~its~~H~~~V~~~~l-p~~l~v~a~~~~Dg~ 322 (360)
T PRK12564 254 ICLGHQLLALALGAKTYKMKFG-HRGANHPVKDLET---------GKVEITSQNHGFAVDEDSL-PANLEVTHVNLNDGT 322 (360)
T ss_pred ECHHHHHHHHHhCCcEeccCCC-ccCCceeeEECCC---------CcEEEEecCcccEEccccc-CCceEEEEEeCCCCc
Confidence 9999999999999999998754 3666555543211 1335678899999976555 5789999987 5889
Q ss_pred eEEEEeCCCCcEEEEeccCCCCCCC-chHHHHHHHHHH
Q 027062 182 IMAARHKKYKHLQGVQFHPESIITT-EGKTIVRNFIKM 218 (229)
Q Consensus 182 i~a~~~~~~~~i~g~QfHPE~~~~~-~~~~i~~~f~~~ 218 (229)
+++++++++| +||+|||||+.+++ ++..+|++|++.
T Consensus 323 iegi~~~~~p-i~gVQfHPE~~~gp~d~~~lF~~F~~~ 359 (360)
T PRK12564 323 VEGLRHKDLP-AFSVQYHPEASPGPHDSAYLFDEFVEL 359 (360)
T ss_pred EEEEEECCCC-EEEEEeCCcCCCCCCCHHHHHHHHHHh
Confidence 9999999988 99999999998876 588999999975
No 29
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=100.00 E-value=9.7e-35 Score=248.41 Aligned_cols=184 Identities=28% Similarity=0.513 Sum_probs=150.2
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEEE
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 103 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlGI 103 (229)
..+|++||+ ++..++.++|++.|+++.+++++ .+.+++...++|||||+|||+++.+...+++.++++-.++|+|||
T Consensus 167 ~~~V~viD~--G~k~ni~~~L~~~G~~v~vvp~~-~~~~~i~~~~~DGIiLsgGPgdp~~~~~~~~~i~~~~~~~PvlGI 243 (354)
T PRK12838 167 GKHVALIDF--GYKKSILRSLSKRGCKVTVLPYD-TSLEEIKNLNPDGIVLSNGPGDPKELQPYLPEIKKLISSYPILGI 243 (354)
T ss_pred CCEEEEECC--CHHHHHHHHHHHCCCeEEEEECC-CCHHHHhhcCCCEEEEcCCCCChHHhHHHHHHHHHHhcCCCEEEE
Confidence 468999998 58899999999999999999986 456677666899999999999987766666666664334999999
Q ss_pred ehhHHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccCCCCCCeEEEEEc-CCCce
Q 027062 104 CMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT-EDGLI 182 (229)
Q Consensus 104 C~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~~~~la~~-~~~~i 182 (229)
|+|||+|+.++||++.+.+.+ .+|.++++..... + ..+.+.++|+++|.++++.+.++.+++.+ .|+.+
T Consensus 244 ClG~QlLa~a~Gg~v~kl~~g-h~G~~hpV~~~~~--~-------~~~~ts~~H~~aV~~~sl~~~~l~v~a~~~~Dg~V 313 (354)
T PRK12838 244 CLGHQLIALALGADTEKLPFG-HRGANHPVIDLTT--G-------RVWMTSQNHGYVVDEDSLDGTPLSVRFFNVNDGSI 313 (354)
T ss_pred CHHHHHHHHHhCCEEecCCCC-ccCCceEEEECCC--C-------eEEEeccchheEecccccCCCCcEEEEEECCCCeE
Confidence 999999999999999998754 4677666654321 1 22456688999998755654568899875 68899
Q ss_pred EEEEeCCCCcEEEEeccCCCCCCC-chHHHHHHHHHHHHH
Q 027062 183 MAARHKKYKHLQGVQFHPESIITT-EGKTIVRNFIKMIVR 221 (229)
Q Consensus 183 ~a~~~~~~~~i~g~QfHPE~~~~~-~~~~i~~~f~~~~~~ 221 (229)
+|++++++| +||+|||||+.+++ ++..||++|++.+.+
T Consensus 314 eai~~~~~p-i~gVQfHPE~~~gp~d~~~lF~~F~~~~~~ 352 (354)
T PRK12838 314 EGLRHKKKP-VLSVQFHPEAHPGPHDAEYIFDEFLEMMEK 352 (354)
T ss_pred EEEEECCCC-EEEEEeCCCCCCCCccHHHHHHHHHHHHHh
Confidence 999999988 99999999998876 688999999998863
No 30
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=100.00 E-value=9.5e-35 Score=228.49 Aligned_cols=175 Identities=28% Similarity=0.496 Sum_probs=136.6
Q ss_pred EEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHH-hCCCCcEEEEeh
Q 027062 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCM 105 (229)
Q Consensus 27 ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PvlGIC~ 105 (229)
|+|||+++.+ +++++++++|.++.+++++ .+.++++..++|||||+||++++.+.....+.+++ .++++|+||||+
T Consensus 1 i~i~d~g~~~--~~~~~l~~~G~~~~~~~~~-~~~~~~~~~~~dgiil~GG~~~~~~~~~~~~~~~~~~~~~~PvlGIC~ 77 (178)
T cd01744 1 VVVIDFGVKH--NILRELLKRGCEVTVVPYN-TDAEEILKLDPDGIFLSNGPGDPALLDEAIKTVRKLLGKKIPIFGICL 77 (178)
T ss_pred CEEEecCcHH--HHHHHHHHCCCeEEEEECC-CCHHHHhhcCCCEEEECCCCCChhHhHHHHHHHHHHHhCCCCEEEECH
Confidence 6899997775 7899999999999999987 34555555579999999999988765555555554 456799999999
Q ss_pred hHHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccCCCCCCeEEEEEc-CCCceEE
Q 027062 106 GLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT-EDGLIMA 184 (229)
Q Consensus 106 G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~~~~la~~-~~~~i~a 184 (229)
|||+|+.++||+|.+.+.+ .++...++.... . ...+.++++|++.+.++.+ +++++++|++ +++.++|
T Consensus 78 G~Q~l~~~~Gg~v~~~~~~-~~g~~~~v~~~~--~-------~~~~~v~~~H~~~v~~~~l-p~~~~v~a~s~~~~~i~a 146 (178)
T cd01744 78 GHQLLALALGAKTYKMKFG-HRGSNHPVKDLI--T-------GRVYITSQNHGYAVDPDSL-PGGLEVTHVNLNDGTVEG 146 (178)
T ss_pred HHHHHHHHcCCceecCCCC-CCCCceeeEEcC--C-------CCcEEEEcCceEEEccccc-CCceEEEEEECCCCcEEE
Confidence 9999999999999987532 355444443221 0 1345678999999975444 5799999987 5789999
Q ss_pred EEeCCCCcEEEEeccCCCCCCC-chHHHHHHHH
Q 027062 185 ARHKKYKHLQGVQFHPESIITT-EGKTIVRNFI 216 (229)
Q Consensus 185 ~~~~~~~~i~g~QfHPE~~~~~-~~~~i~~~f~ 216 (229)
+++++.| +||+|||||+..++ +...||++|+
T Consensus 147 ~~~~~~~-i~GvQfHPE~~~~~~~~~~lf~~f~ 178 (178)
T cd01744 147 IRHKDLP-VFSVQFHPEASPGPHDTEYLFDEFL 178 (178)
T ss_pred EEECCCC-eEEEeeCCCCCCCCCCchHhHhhhC
Confidence 9999887 99999999998765 5678999985
No 31
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=100.00 E-value=1.8e-34 Score=248.27 Aligned_cols=183 Identities=26% Similarity=0.468 Sum_probs=147.1
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHh-CCCCcEEE
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFG 102 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~-~~~~PvlG 102 (229)
+++|+|||+ ++..++.++|+++|+++.+++++ .+.++++..++|||||+|||+++.+...++..+.++ +.++|+||
T Consensus 192 ~~~I~viD~--g~k~ni~~~L~~~G~~v~vvp~~-~~~~~i~~~~~dgIilSgGPg~p~~~~~~i~~i~~~~~~~~PilG 268 (382)
T CHL00197 192 QLKIIVIDF--GVKYNILRRLKSFGCSITVVPAT-SPYQDILSYQPDGILLSNGPGDPSAIHYGIKTVKKLLKYNIPIFG 268 (382)
T ss_pred CCEEEEEEC--CcHHHHHHHHHHCCCeEEEEcCC-CCHHHHhccCCCEEEEcCCCCChhHHHHHHHHHHHHHhCCCCEEE
Confidence 579999999 78889999999999999999986 567788777899999999999998777766666553 45799999
Q ss_pred EehhHHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCce-eeeeeeceeeeccCCCCCCeEEEEEc-CCC
Q 027062 103 VCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPF-TAGRYHSLVIEKESFPSDALEVTAWT-EDG 180 (229)
Q Consensus 103 IC~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~-~~~~~H~~~v~~~~l~~~~~~~la~~-~~~ 180 (229)
||+|||+|+.++||++.+.+.+. .|..+++. ++..+ ...++|++.+.+++++..++.+++.+ +|+
T Consensus 269 IClGhQlLa~a~Gg~v~k~~~Gh-~g~n~pv~------------~~~~v~itsq~H~~~v~~~sv~~~~~~vt~~~~nDg 335 (382)
T CHL00197 269 ICMGHQILSLALEAKTFKLKFGH-RGLNHPSG------------LNQQVEITSQNHGFAVNLESLAKNKFYITHFNLNDG 335 (382)
T ss_pred EcHHHHHHHHHhCCEEeccCCCC-CCCCEecC------------CCCceEEeecchheEeeccccCCCCcEEEEEECCCC
Confidence 99999999999999999987543 34333221 12223 33478999998766654578888875 688
Q ss_pred ceEEEEeCCCCcEEEEeccCCCCCCCc-hHHHHHHHHHHHHHHh
Q 027062 181 LIMAARHKKYKHLQGVQFHPESIITTE-GKTIVRNFIKMIVRKE 223 (229)
Q Consensus 181 ~i~a~~~~~~~~i~g~QfHPE~~~~~~-~~~i~~~f~~~~~~~~ 223 (229)
.+++++++++| +||+|||||+.+++. ...+|++|++.+++++
T Consensus 336 tvegi~h~~~p-i~gVQFHPE~~~gp~d~~~lf~~Fv~~~~~~~ 378 (382)
T CHL00197 336 TVAGISHSPKP-YFSVQYHPEASPGPHDADYLFEYFIEIIKHSK 378 (382)
T ss_pred CEEEEEECCCC-cEEEeeCCCCCCCCCCHHHHHHHHHHHHHhhh
Confidence 99999999987 999999999988774 5679999999887543
No 32
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=100.00 E-value=2.7e-34 Score=239.12 Aligned_cols=187 Identities=26% Similarity=0.490 Sum_probs=158.0
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHh-CCCCcEE
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLF 101 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~-~~~~Pvl 101 (229)
...+|++||+ +..+++.+.|.+.|+++.+++++ .+.+++.++++|||+|+-|||+|......+..++++ +..+|+|
T Consensus 178 ~~~~Vv~iD~--GvK~nIlr~L~~rg~~vtVVP~~-t~~eeIl~~~pDGiflSNGPGDP~~~~~~i~~ik~l~~~~iPif 254 (368)
T COG0505 178 PGKHVVVIDF--GVKRNILRELVKRGCRVTVVPAD-TSAEEILALNPDGIFLSNGPGDPAPLDYAIETIKELLGTKIPIF 254 (368)
T ss_pred CCcEEEEEEc--CccHHHHHHHHHCCCeEEEEcCC-CCHHHHHhhCCCEEEEeCCCCChhHHHHHHHHHHHHhccCCCeE
Confidence 4678999998 78889999999999999999987 788999888999999999999997777788888875 4556999
Q ss_pred EEehhHHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccCCCCCCeEEEEEc-CCC
Q 027062 102 GVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT-EDG 180 (229)
Q Consensus 102 GIC~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~~~~la~~-~~~ 180 (229)
|||+|||||+.|+|++..+++.|. +|.++++.--.. ..-....++|+++|+++++.... +++..+ .|+
T Consensus 255 GICLGHQllalA~Ga~T~KmkFGH-rG~NhPV~dl~t---------grv~ITSQNHGyaVd~~s~~~~~-~vth~nlnDg 323 (368)
T COG0505 255 GICLGHQLLALALGAKTYKMKFGH-RGANHPVKDLDT---------GRVYITSQNHGYAVDEDSLVETL-KVTHVNLNDG 323 (368)
T ss_pred EEcHHHHHHHHhcCCceeecccCC-CCCCcCcccccC---------CeEEEEecCCceecChhhcCCCc-eeEEEeCCCC
Confidence 999999999999999999999874 887776642211 13456779999999987665433 666666 578
Q ss_pred ceEEEEeCCCCcEEEEeccCCCCCCC-chHHHHHHHHHHHHHHhh
Q 027062 181 LIMAARHKKYKHLQGVQFHPESIITT-EGKTIVRNFIKMIVRKEA 224 (229)
Q Consensus 181 ~i~a~~~~~~~~i~g~QfHPE~~~~~-~~~~i~~~f~~~~~~~~~ 224 (229)
.+|+++++++| ++++|||||.++.| +...+|+.|++.+...+.
T Consensus 324 TvEGi~h~~~P-~fSVQ~HPEAsPGPhDt~ylFd~Fi~~~~~~~~ 367 (368)
T COG0505 324 TVEGIRHKDLP-AFSVQYHPEASPGPHDTRYLFDEFIELMEAAKK 367 (368)
T ss_pred CccceecCCCc-eEEEccCCCCCCCCcccHHHHHHHHHHHHHhhc
Confidence 99999999998 99999999999988 789999999999987653
No 33
>PRK09065 glutamine amidotransferase; Provisional
Probab=100.00 E-value=2.1e-34 Score=235.80 Aligned_cols=163 Identities=25% Similarity=0.271 Sum_probs=127.2
Q ss_pred CchhHHHHHHHHHcCCEEEEEeCCcc-CHHHHhccCCCEEEECCCCCCCCCcchHHH----HHHH-hCCCCcEEEEehhH
Q 027062 34 DSFTYNLCQYMGELGYHFEVYRNDEL-TVEELKRKNPRGVLISPGPGAPQDSGISLQ----TVLE-LGPTVPLFGVCMGL 107 (229)
Q Consensus 34 ~~~~~~~~~~l~~~g~~~~v~~~~~~-~~~~l~~~~~dgiii~GG~~~~~~~~~~~~----~i~~-~~~~~PvlGIC~G~ 107 (229)
+.|...+.+.+...|.++.+++.... +..++. +||||||+||+.++++...|+. .+++ +..++||||||+||
T Consensus 21 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~ 98 (237)
T PRK09065 21 GDFPHWIRVALGLAEQPVVVVRVFAGEPLPAPD--DFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYGH 98 (237)
T ss_pred CCHHHHHHHHhccCCceEEEEeccCCCCCCChh--hcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCCCEEEEChhH
Confidence 44555666667778999988776532 222333 6899999999999988766643 3333 35689999999999
Q ss_pred HHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccCCCCCCeEEEEEcCCCceEEEEe
Q 027062 108 QCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARH 187 (229)
Q Consensus 108 Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~~~~la~~~~~~i~a~~~ 187 (229)
|+|+.++||+|.+.+.+.+.|............+++|+++++.+.++++|++.|.. +|++++++|+++++.+|++++
T Consensus 99 Qlla~alGg~V~~~~~g~e~G~~~v~~~~~~~~~~l~~~~~~~~~v~~~H~d~v~~---lp~~~~~la~s~~~~iqa~~~ 175 (237)
T PRK09065 99 QLLAHALGGEVGYNPAGRESGTVTVELHPAAADDPLFAGLPAQFPAHLTHLQSVLR---LPPGAVVLARSAQDPHQAFRY 175 (237)
T ss_pred HHHHHHcCCccccCCCCCccceEEEEEccccccChhhhcCCccCcEeeehhhhhhh---CCCCCEEEEcCCCCCeeEEEe
Confidence 99999999999998766666654333333333578999999999999999999875 679999999999999999999
Q ss_pred CCCCcEEEEeccCCCC
Q 027062 188 KKYKHLQGVQFHPESI 203 (229)
Q Consensus 188 ~~~~~i~g~QfHPE~~ 203 (229)
++ ++||+|||||++
T Consensus 176 ~~--~i~gvQfHPE~~ 189 (237)
T PRK09065 176 GP--HAWGVQFHPEFT 189 (237)
T ss_pred CC--CEEEEEeCCcCC
Confidence 76 499999999985
No 34
>PRK06490 glutamine amidotransferase; Provisional
Probab=100.00 E-value=1.9e-33 Score=230.14 Aligned_cols=179 Identities=21% Similarity=0.324 Sum_probs=137.0
Q ss_pred cCCCceEEEEECCC-chhHHHHHHHHHcCCEEEEEeCCcc-C-HHHHhccCCCEEEECCCCCCCCCcchHHH----HHHH
Q 027062 21 KNNKNPIIVIDNYD-SFTYNLCQYMGELGYHFEVYRNDEL-T-VEELKRKNPRGVLISPGPGAPQDSGISLQ----TVLE 93 (229)
Q Consensus 21 ~~~~~~ilvid~~~-~~~~~~~~~l~~~g~~~~v~~~~~~-~-~~~l~~~~~dgiii~GG~~~~~~~~~~~~----~i~~ 93 (229)
-..+|+|+||++++ ++..++.++|++.|.++.+++.... + .++++ +|||+||+||++++++...|+. .+++
T Consensus 4 ~~~~~~vlvi~h~~~~~~g~l~~~l~~~g~~~~v~~~~~~~~~p~~l~--~~dgvii~Ggp~~~~d~~~wi~~~~~~i~~ 81 (239)
T PRK06490 4 ARDKRPVLIVLHQERSTPGRVGQLLQERGYPLDIRRPRLGDPLPDTLE--DHAGAVIFGGPMSANDPDDFIRREIDWISV 81 (239)
T ss_pred cCCCceEEEEecCCCCCChHHHHHHHHCCCceEEEeccCCCCCCCccc--ccCEEEEECCCCCCCCCchHHHHHHHHHHH
Confidence 34678999998876 5889999999999999998875311 1 12333 6899999999999998877643 3333
Q ss_pred -hCCCCcEEEEehhHHHHHHHhCCeeeecCCcc-ccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccCCCCCCe
Q 027062 94 -LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGV-MHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDAL 171 (229)
Q Consensus 94 -~~~~~PvlGIC~G~Qlla~alGg~v~~~~~~~-~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~~ 171 (229)
...++|+||||+|||+|+.++||+|.+.+.+. +.|. ..+.++. ..+++..++ ..++++|++.+. +|+++
T Consensus 82 ~~~~~~PvLGIC~G~Qlla~alGG~V~~~~~G~~e~G~-~~i~~~~--~~~~~~~~~--~~~~~~H~d~~~----lP~~~ 152 (239)
T PRK06490 82 PLKENKPFLGICLGAQMLARHLGARVAPHPDGRVEIGY-YPLRPTE--AGRALMHWP--EMVYHWHREGFD----LPAGA 152 (239)
T ss_pred HHHCCCCEEEECHhHHHHHHHcCCEeecCCCCCCccce-EEeEECC--CcccccCCC--CEEEEECCcccc----CCCCC
Confidence 45789999999999999999999999987554 4453 4444443 333445544 458889999853 57899
Q ss_pred EEEEEcCCCceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHH
Q 027062 172 EVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 217 (229)
Q Consensus 172 ~~la~~~~~~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~ 217 (229)
+++|++++|.+|+|++++ ++||+|||||++ ..++++|+.
T Consensus 153 ~~LA~s~~~~~qa~~~~~--~v~g~QfHPE~~-----~~~~~~~i~ 191 (239)
T PRK06490 153 ELLATGDDFPNQAFRYGD--NAWGLQFHPEVT-----RAMMHRWVV 191 (239)
T ss_pred EEEEeCCCCCeEEEEeCC--CEEEEeeCccCC-----HHHHHHHHH
Confidence 999999999999999976 499999999996 355555554
No 35
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=100.00 E-value=3.4e-33 Score=259.36 Aligned_cols=195 Identities=30% Similarity=0.538 Sum_probs=151.4
Q ss_pred cCCCceEEEEECCCchhHHHHHHHHHc---CCEEEEEeCCccCHHHHhc-cCCCEEEECCCCCCCCCcch--HHHHHHHh
Q 027062 21 KNNKNPIIVIDNYDSFTYNLCQYMGEL---GYHFEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDSGI--SLQTVLEL 94 (229)
Q Consensus 21 ~~~~~~ilvid~~~~~~~~~~~~l~~~---g~~~~v~~~~~~~~~~l~~-~~~dgiii~GG~~~~~~~~~--~~~~i~~~ 94 (229)
+..+++||+||++|+|+.++++.|++. ++++.+++++....+.+.. .++|+|||+|||+++.+... +.+.+.+.
T Consensus 2 ~~~~~~iL~ID~~DSft~nl~~~l~~~~g~~~~v~vv~~d~~~~~~~~~l~~~D~VVIspGPG~p~~~~~~~i~~~i~~~ 81 (742)
T TIGR01823 2 QQQRLHVLFIDSYDSFTYNVVRLLEQQTDISVHVTTVHSDTFQDQLLELLPLFDAIVVGPGPGNPNNAQDMGIISELWEL 81 (742)
T ss_pred CCCCceEEEEeCCcchHHHHHHHHHHhcCCCcEEEEEeCCCCchhhhhhhcCCCEEEECCCCCCccchhhhHHHHHHHHh
Confidence 345789999999999999999999986 3677888876443222222 26899999999999975443 34444443
Q ss_pred C--CCCcEEEEehhHHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccCCCCCC--
Q 027062 95 G--PTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDA-- 170 (229)
Q Consensus 95 ~--~~~PvlGIC~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~-- 170 (229)
. .++||||||+|||+|+.++||+|.+.+. .++|....+... ...+|.+++. +.++++|++.+..+ .++.
T Consensus 82 ~~~~~iPvLGIClG~QlLa~a~GG~v~~~~~-~~hG~~~~v~~~---~~~lf~gl~~-~~v~~~Hs~~v~~~--~~~~l~ 154 (742)
T TIGR01823 82 ANLDEVPVLGICLGFQSLCLAQGADISRLPT-PKHGQVYEMHTN---DAAIFCGLFS-VKSTRYHSLYANPE--GIDTLL 154 (742)
T ss_pred cccCCCcEEEEchhhHHHHhhcCCEEEECCC-CCcCeEEEEEEC---CccccCCCCC-CceeEEEEEEccCC--CCCcce
Confidence 2 4699999999999999999999999874 568876555442 4568999875 89999999998642 2233
Q ss_pred eEEEEEcCCC-ceEEEEeCCCCcEEEEeccCCCCCCCch-HHHHHHHHHHHHHHh
Q 027062 171 LEVTAWTEDG-LIMAARHKKYKHLQGVQFHPESIITTEG-KTIVRNFIKMIVRKE 223 (229)
Q Consensus 171 ~~~la~~~~~-~i~a~~~~~~~~i~g~QfHPE~~~~~~~-~~i~~~f~~~~~~~~ 223 (229)
+.+++.++++ .++|++++++| +||+|||||+..++.+ .+||+||++.+.+.+
T Consensus 155 ~~~~a~~~~~~~i~ai~h~~~p-i~GVQFHPE~~~s~~g~~~Lf~nFl~~~~~~~ 208 (742)
T TIGR01823 155 PLCLTEDEEGIILMSAQTKKKP-WFGVQYHPESCCSELGSGKLVSNFLKLAFINN 208 (742)
T ss_pred EEEEEEcCCCCeEEEEEEcCCc-eEEEEeCcccCCCCccHHHHHHHHHHHHHHhh
Confidence 4566666654 79999999987 9999999999888765 999999999988665
No 36
>PRK07567 glutamine amidotransferase; Provisional
Probab=100.00 E-value=2.1e-33 Score=230.44 Aligned_cols=170 Identities=22% Similarity=0.301 Sum_probs=130.1
Q ss_pred ceEEEEECCCchh---HHHHHHHHHcCCE---EEEEeCCcc--CHHHHhccCCCEEEECCCCCCCCCc----chHHHH--
Q 027062 25 NPIIVIDNYDSFT---YNLCQYMGELGYH---FEVYRNDEL--TVEELKRKNPRGVLISPGPGAPQDS----GISLQT-- 90 (229)
Q Consensus 25 ~~ilvid~~~~~~---~~~~~~l~~~g~~---~~v~~~~~~--~~~~l~~~~~dgiii~GG~~~~~~~----~~~~~~-- 90 (229)
++|+|+++.+... +.+.++++..|.. +.+++.+.. +..+++ +||||||+||++++++. ..|+..
T Consensus 2 ~~ililq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~ 79 (242)
T PRK07567 2 KPFLLLSPRPEDEAADAEYAAFLRYTGLDPAELRRIRLDREPLPDLDLD--DYSGVIVGGSPFNVSDPAESKSPWQRRVE 79 (242)
T ss_pred CcEEEEecCCCcccccchHHHHHHhcCCCccceEEEecccCCCCCCCHh--hccEEEEcCCCCcCCCCCCccchHHHHHH
Confidence 3489998865532 6788889888865 555554322 111333 67999999999999876 344322
Q ss_pred --HHH-----hCCCCcEEEEehhHHHHHHHhCCeeeecCCccccCccceeEecc-CCCCcccccCCCceeeeeeeceeee
Q 027062 91 --VLE-----LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDE-KGEDGLLAGLSNPFTAGRYHSLVIE 162 (229)
Q Consensus 91 --i~~-----~~~~~PvlGIC~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~-~~~~~l~~~l~~~~~~~~~H~~~v~ 162 (229)
+++ ...++||||||+|||+|+.++||+|.+ ..+++.|.. .+.++. ...+++|.+++..+.++++|++.|.
T Consensus 80 ~~i~~~i~~~~~~~~PvLGIC~G~Qlla~a~GG~V~~-~~g~e~G~~-~v~l~~~g~~~~l~~~~~~~~~~~~~H~d~V~ 157 (242)
T PRK07567 80 AELSGLLDEVVARDFPFLGACYGVGTLGHHQGGVVDR-TYGEPVGAV-TVSLTDAGRADPLLAGLPDTFTAFVGHKEAVS 157 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEEchhHHHHHHHcCCEEec-CCCCcCccE-EEEECCccCCChhhcCCCCceEEEeehhhhhh
Confidence 221 267899999999999999999999998 445666644 444443 3357899999999999999999997
Q ss_pred ccCCCCCCeEEEEEcCCCceEEEEeCCCCcEEEEeccCCCC
Q 027062 163 KESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESI 203 (229)
Q Consensus 163 ~~~l~~~~~~~la~~~~~~i~a~~~~~~~~i~g~QfHPE~~ 203 (229)
. +|++++++|++++|.+||+++++ ++||+|||||++
T Consensus 158 ~---lp~~~~vlA~s~~~~vqa~~~~~--~~~gvQfHPE~~ 193 (242)
T PRK07567 158 A---LPPGAVLLATSPTCPVQMFRVGE--NVYATQFHPELD 193 (242)
T ss_pred h---CCCCCEEEEeCCCCCEEEEEeCC--CEEEEEeCCcCC
Confidence 5 67999999999999999999875 499999999996
No 37
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=100.00 E-value=2.4e-33 Score=241.86 Aligned_cols=172 Identities=27% Similarity=0.476 Sum_probs=141.4
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEEEe
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlGIC 104 (229)
.+|+++|+ +...++++.|+++|+++.+++++ .+.+++...++|||||+|||+++.+.....+.++++..++|+||||
T Consensus 241 ~~IvviD~--G~K~nIlr~L~~~G~~v~VvP~~-~~~~ei~~~~pDGIiLSnGPGDP~~~~~~ie~ik~l~~~iPIlGIC 317 (415)
T PLN02771 241 YHVIAYDF--GIKHNILRRLASYGCKITVVPST-WPASEALKMKPDGVLFSNGPGDPSAVPYAVETVKELLGKVPVFGIC 317 (415)
T ss_pred CEEEEECC--ChHHHHHHHHHHcCCeEEEECCC-CCHHHHhhcCCCEEEEcCCCCChhHhhHHHHHHHHHHhCCCEEEEc
Confidence 58999998 56899999999999999999987 5677877778999999999999987776666666654579999999
Q ss_pred hhHHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccCCCCCCeEEEEEc-CCCceE
Q 027062 105 MGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT-EDGLIM 183 (229)
Q Consensus 105 ~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~~~~la~~-~~~~i~ 183 (229)
+|||+|+.++||++.+.+.+ .+|.++++..... . .-..+.++|++.|+++++ |.++++++.+ .|+.++
T Consensus 318 LGhQlLa~AlGGkv~K~~~G-h~G~n~pV~~~~~--~-------~v~itsqnHg~aVd~~sL-p~~~~vt~~nlnDgtve 386 (415)
T PLN02771 318 MGHQLLGQALGGKTFKMKFG-HHGGNHPVRNNRT--G-------RVEISAQNHNYAVDPASL-PEGVEVTHVNLNDGSCA 386 (415)
T ss_pred HHHHHHHHhcCCeEEECCCC-cccceEEEEECCC--C-------CEEEEecCHHHhhccccC-CCceEEEEEeCCCCcEE
Confidence 99999999999999999865 4777766653211 1 123567999999976665 5789999987 689999
Q ss_pred EEEeCCCCcEEEEeccCCCCCCC-chHHH
Q 027062 184 AARHKKYKHLQGVQFHPESIITT-EGKTI 211 (229)
Q Consensus 184 a~~~~~~~~i~g~QfHPE~~~~~-~~~~i 211 (229)
+++++++| ++|+|||||+.+++ +...+
T Consensus 387 gi~~~~~p-i~gVQFHPEa~pgp~Ds~~~ 414 (415)
T PLN02771 387 GLAFPALN-VMSLQYHPEASPGPHDSDNA 414 (415)
T ss_pred EEEECCCC-EEEEEcCCCCCCCCCcChhh
Confidence 99999987 99999999999877 44443
No 38
>PRK05665 amidotransferase; Provisional
Probab=100.00 E-value=3.8e-33 Score=228.20 Aligned_cols=170 Identities=18% Similarity=0.147 Sum_probs=129.5
Q ss_pred CceEEEEECCCc----------hhHHHHHHHHHcCC--EEEEEeCCccC-HHHHhccCCCEEEECCCCCCCCCcchHHHH
Q 027062 24 KNPIIVIDNYDS----------FTYNLCQYMGELGY--HFEVYRNDELT-VEELKRKNPRGVLISPGPGAPQDSGISLQT 90 (229)
Q Consensus 24 ~~~ilvid~~~~----------~~~~~~~~l~~~g~--~~~v~~~~~~~-~~~l~~~~~dgiii~GG~~~~~~~~~~~~~ 90 (229)
.|||+||..... |...+.++|...+. ++.++...... ..++ .+|||+||+||+.++++...|+..
T Consensus 2 ~mki~IL~~~~~~~~~~~~~g~~~~~~~~ll~~~~~~~~~~~~~~~~~~~p~~~--~~~dgiiitGs~~~v~~~~pwi~~ 79 (240)
T PRK05665 2 SLRICILETDVLRPELVAQYQGYGRMFEQLFARQPIAAEFVVYNVVQGDYPADD--EKFDAYLVTGSKADSFGTDPWIQT 79 (240)
T ss_pred ceEEEEEECCCCCHHHHHHhCCHHHHHHHHHHhCCCCceEEEEeccCCCCCCCc--ccCCEEEECCCCCCccccchHHHH
Confidence 357899976432 33446667777664 44444422111 1122 268999999999999988777543
Q ss_pred ----HHH-hCCCCcEEEEehhHHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccC
Q 027062 91 ----VLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKES 165 (229)
Q Consensus 91 ----i~~-~~~~~PvlGIC~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~ 165 (229)
+++ ..+++|+||||+|||+|+.++||+|.+.+.+++.|... +... ...++|..+++.+.++++|+|.|..
T Consensus 80 l~~~i~~~~~~~~PilGIC~GhQlla~AlGG~V~~~~~G~e~G~~~-~~~~--~~~~~~~~~~~~~~~~~~H~D~V~~-- 154 (240)
T PRK05665 80 LKTYLLKLYERGDKLLGVCFGHQLLALLLGGKAERASQGWGVGIHR-YQLA--AHAPWMSPAVTELTLLISHQDQVTA-- 154 (240)
T ss_pred HHHHHHHHHhcCCCEEEEeHHHHHHHHHhCCEEEeCCCCcccceEE-EEec--CCCccccCCCCceEEEEEcCCeeee--
Confidence 333 35789999999999999999999999998777666543 3333 2456888888999999999999976
Q ss_pred CCCCCeEEEEEcCCCceEEEEeCCCCcEEEEeccCCCC
Q 027062 166 FPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESI 203 (229)
Q Consensus 166 l~~~~~~~la~~~~~~i~a~~~~~~~~i~g~QfHPE~~ 203 (229)
+|++++++|+++.|.+|+++.++ ++||+|||||++
T Consensus 155 -LP~ga~~La~s~~~~~q~~~~~~--~~~g~QfHPE~~ 189 (240)
T PRK05665 155 -LPEGATVIASSDFCPFAAYHIGD--QVLCFQGHPEFV 189 (240)
T ss_pred -CCCCcEEEEeCCCCcEEEEEeCC--CEEEEecCCcCc
Confidence 78999999999999999999875 599999999996
No 39
>PRK07053 glutamine amidotransferase; Provisional
Probab=100.00 E-value=1.4e-32 Score=224.28 Aligned_cols=172 Identities=21% Similarity=0.253 Sum_probs=132.6
Q ss_pred CceEEEEECCCc-hhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc--hHH----HHHHH-hC
Q 027062 24 KNPIIVIDNYDS-FTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG--ISL----QTVLE-LG 95 (229)
Q Consensus 24 ~~~ilvid~~~~-~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~--~~~----~~i~~-~~ 95 (229)
+++|+||++... ..+.+.++|++.|.++.+++.+.......+..++|+|||+||+.++++.. .|+ +.+++ +.
T Consensus 2 m~~ilviqh~~~e~~g~i~~~L~~~g~~~~v~~~~~~~~~~~~~~~~d~lii~Ggp~~~~d~~~~p~~~~~~~~i~~~~~ 81 (234)
T PRK07053 2 MKTAVAIRHVAFEDLGSFEQVLGARGYRVRYVDVGVDDLETLDALEPDLLVVLGGPIGVYDDELYPFLAPEIALLRQRLA 81 (234)
T ss_pred CceEEEEECCCCCCChHHHHHHHHCCCeEEEEecCCCccCCCCccCCCEEEECCCCCCCCCCCcCCcHHHHHHHHHHHHH
Confidence 567999998654 45889999999999999988643221111223689999999999988753 332 33333 45
Q ss_pred CCCcEEEEehhHHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccCCCCCCeEEEE
Q 027062 96 PTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTA 175 (229)
Q Consensus 96 ~~~PvlGIC~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~~~~la 175 (229)
.++|+||||+|||+|+.++||+|.+.+ +.+.|............+++ .+++..+.+++||++.++ +|++++++|
T Consensus 82 ~~~PvlGIC~G~Qlla~alGg~V~~~~-~~e~G~~~i~~t~~g~~~pl-~~~~~~~~~~~~H~d~~~----lP~ga~~La 155 (234)
T PRK07053 82 AGLPTLGICLGAQLIARALGARVYPGG-QKEIGWAPLTLTDAGRASPL-RHLGAGTPVLHWHGDTFD----LPEGATLLA 155 (234)
T ss_pred CCCCEEEECccHHHHHHHcCCcEecCC-CCeEeEEEEEEeccccCChh-hcCCCcceEEEEeCCEEe----cCCCCEEEE
Confidence 689999999999999999999999975 56677554333333334555 467778899999999986 579999999
Q ss_pred EcCCCceEEEEeCCCCcEEEEeccCCCC
Q 027062 176 WTEDGLIMAARHKKYKHLQGVQFHPESI 203 (229)
Q Consensus 176 ~~~~~~i~a~~~~~~~~i~g~QfHPE~~ 203 (229)
+++.|.+|+|+.++ ++||+|||||++
T Consensus 156 ~s~~~~~qaf~~g~--~~~g~QfHpE~~ 181 (234)
T PRK07053 156 STPACRHQAFAWGN--HVLALQFHPEAR 181 (234)
T ss_pred cCCCCCeeEEEeCC--CEEEEeeCccCC
Confidence 99999999999865 599999999996
No 40
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=100.00 E-value=1e-31 Score=221.82 Aligned_cols=181 Identities=24% Similarity=0.284 Sum_probs=128.3
Q ss_pred HHHHHHHHHcCCEEEEEeCCccCHHHHhc--cCCCEEEECCCCCCCC--------Ccc---hH-----HHHHHH-hCCCC
Q 027062 38 YNLCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQ--------DSG---IS-----LQTVLE-LGPTV 98 (229)
Q Consensus 38 ~~~~~~l~~~g~~~~v~~~~~~~~~~l~~--~~~dgiii~GG~~~~~--------~~~---~~-----~~~i~~-~~~~~ 98 (229)
..+++++..+|....+++......+.++. ..+|||||+||+.++. +.. .+ +..++. +++++
T Consensus 29 ~~y~~~i~~aGg~pv~lp~~~~~~~~~~~~l~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~ 108 (254)
T PRK11366 29 EKYLNAIIHAGGLPIALPHALAEPSLLEQLLPKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRI 108 (254)
T ss_pred HHHHHHHHHCCCEEEEecCCCCCHHHHHHHHHhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCC
Confidence 45888888899888777743111122221 1589999999986552 111 11 233333 56789
Q ss_pred cEEEEehhHHHHHHHhCCeeeecC----CccccCc------------cceeEeccCCCCcccccC-C--Cceeeeeeece
Q 027062 99 PLFGVCMGLQCIGEAFGGKIVRSP----LGVMHGK------------SSLVYYDEKGEDGLLAGL-S--NPFTAGRYHSL 159 (229)
Q Consensus 99 PvlGIC~G~Qlla~alGg~v~~~~----~~~~~g~------------~~~~~~~~~~~~~l~~~l-~--~~~~~~~~H~~ 159 (229)
||||||+|||+|+.++||++.+.- ....|+. .+.+.+. ++.++..+ + ..+.++++|++
T Consensus 109 PILGICrG~Qllnva~GGtl~~~~~~~~~~~~h~~~~~~~~~~~~~~~h~v~~~---~~s~l~~i~~~~~~~~Vns~H~q 185 (254)
T PRK11366 109 PIFAICRGLQELVVATGGSLHRKLCEQPELLEHREDPELPVEQQYAPSHEVQVE---EGGLLSALLPECSNFWVNSLHGQ 185 (254)
T ss_pred CEEEECHhHHHHHHHhCCeEeecccccccccccccCCccccccccCCceEEEEC---CCCcHHHhcCCCceEEeehHHHH
Confidence 999999999999999999999762 1101111 2223332 23334333 2 46789999999
Q ss_pred eeeccCCCCCCeEEEEEcCCCceEEEEeCCCCcEEEEeccCCCCCCCch--HHHHHHHHHHHHHHhh
Q 027062 160 VIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEG--KTIVRNFIKMIVRKEA 224 (229)
Q Consensus 160 ~v~~~~l~~~~~~~la~~~~~~i~a~~~~~~~~i~g~QfHPE~~~~~~~--~~i~~~f~~~~~~~~~ 224 (229)
+|.. ++++++++|++++|.+|||+++++++++|+|||||+..++.+ ..||++|++.+++...
T Consensus 186 ~V~~---l~~gl~v~A~s~dg~ieAie~~~~~~~~GVQwHPE~~~~~~~~~~~lf~~fv~~~~~~~~ 249 (254)
T PRK11366 186 GAKV---VSPRLRVEARSPDGLVEAVSVINHPFALGVQWHPEWNSSEYALSRILFEGFITACQHHIA 249 (254)
T ss_pred HHhh---cccceEEEEEcCCCcEEEEEeCCCCCEEEEEeCCCcCCCCCchHHHHHHHHHHHHHHHHH
Confidence 9986 789999999999999999999987767999999999876655 7899999999875443
No 41
>PRK08250 glutamine amidotransferase; Provisional
Probab=100.00 E-value=1.3e-31 Score=219.03 Aligned_cols=170 Identities=21% Similarity=0.246 Sum_probs=131.9
Q ss_pred ceEEEEECCCc-hhHHHHHHHHHcCCEEEEEeCCccCHHHHh--ccCCCEEEECCCCCCCCC---cchHH------HHHH
Q 027062 25 NPIIVIDNYDS-FTYNLCQYMGELGYHFEVYRNDELTVEELK--RKNPRGVLISPGPGAPQD---SGISL------QTVL 92 (229)
Q Consensus 25 ~~ilvid~~~~-~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~--~~~~dgiii~GG~~~~~~---~~~~~------~~i~ 92 (229)
|||+||.+..- -.+.+..++++.|+++.++...... .+. ..++|||||+||++++.+ ...|+ +.++
T Consensus 1 m~i~vi~h~~~e~~g~~~~~~~~~g~~~~~~~~~~g~--~~p~~~~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~ 78 (235)
T PRK08250 1 MRVHFIIHESFEAPGAYLKWAENRGYDISYSRVYAGE--ALPENADGFDLLIVMGGPQSPRTTREECPYFDSKAEQRLIN 78 (235)
T ss_pred CeEEEEecCCCCCchHHHHHHHHCCCeEEEEEccCCC--CCCCCccccCEEEECCCCCChhhccccccccchHHHHHHHH
Confidence 68999987433 2467889999999999887644211 121 126899999999998653 22232 3344
Q ss_pred H-hCCCCcEEEEehhHHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccCCCCCCe
Q 027062 93 E-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDAL 171 (229)
Q Consensus 93 ~-~~~~~PvlGIC~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~~ 171 (229)
+ ++.++|+||||+|+|+|+.++||+|.+.+. ++.|............+++|.++++.+.+++||++.+. +|+++
T Consensus 79 ~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~~-~e~G~~~v~lt~~g~~d~l~~~~~~~~~v~~~H~d~~~----lP~~a 153 (235)
T PRK08250 79 QAIKAGKAVIGVCLGAQLIGEALGAKYEHSPE-KEIGYFPITLTEAGLKDPLLSHFGSTLTVGHWHNDMPG----LTDQA 153 (235)
T ss_pred HHHHcCCCEEEEChhHHHHHHHhCceeccCCC-CceeEEEEEEccccccCchhhcCCCCcEEEEEecceec----CCCCC
Confidence 3 357899999999999999999999999884 66776543333344467899999999999999999864 57999
Q ss_pred EEEEEcCCCceEEEEeCCCCcEEEEeccCCCC
Q 027062 172 EVTAWTEDGLIMAARHKKYKHLQGVQFHPESI 203 (229)
Q Consensus 172 ~~la~~~~~~i~a~~~~~~~~i~g~QfHPE~~ 203 (229)
+++|+++.|.+|+++.++ ++||+|||||++
T Consensus 154 ~~LA~s~~~~~qa~~~~~--~~~g~QfHPE~~ 183 (235)
T PRK08250 154 KVLATSEGCPRQIVQYSN--LVYGFQCHMEFT 183 (235)
T ss_pred EEEECCCCCCceEEEeCC--CEEEEeecCcCC
Confidence 999999999999999976 499999999996
No 42
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=100.00 E-value=9.4e-32 Score=213.31 Aligned_cols=176 Identities=27% Similarity=0.388 Sum_probs=136.5
Q ss_pred eEEEEECCCch-hHHHHHHHHHcC---CEEEEEeCCccCH-HHHhccCCCEEEECCCCCCC-CCcchHH----HHHHH-h
Q 027062 26 PIIVIDNYDSF-TYNLCQYMGELG---YHFEVYRNDELTV-EELKRKNPRGVLISPGPGAP-QDSGISL----QTVLE-L 94 (229)
Q Consensus 26 ~ilvid~~~~~-~~~~~~~l~~~g---~~~~v~~~~~~~~-~~l~~~~~dgiii~GG~~~~-~~~~~~~----~~i~~-~ 94 (229)
||+||+..... ...+.++++++| +++++++...... .++ .++|||||+||+.++ .+...|. +.++. .
T Consensus 1 ~i~il~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~--~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~ 78 (188)
T cd01741 1 RILILQHDTPEGPGLFEDLLREAGAETIEIDVVDVYAGELLPDL--DDYDGLVILGGPMSVDEDDYPWLKKLKELIRQAL 78 (188)
T ss_pred CEEEEECCCCCCcchHHHHHHhcCCCCceEEEEecCCCCCCCCc--ccCCEEEECCCCccCCccCChHHHHHHHHHHHHH
Confidence 57888764433 578999999998 6888888653222 122 278999999999888 4444432 33333 4
Q ss_pred CCCCcEEEEehhHHHHHHHhCCeeeecCCccccCccceeEecc-CCCCcccccCCCceeeeeeeceeeeccCCCCCCeEE
Q 027062 95 GPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDE-KGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEV 173 (229)
Q Consensus 95 ~~~~PvlGIC~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~-~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~~~~ 173 (229)
.+++|+||||+|||+|+.++||+|.+.+.+++.| +..+.++. ...+++|+++++.+.++++|++.|.. +|+++++
T Consensus 79 ~~~~pilgiC~G~q~l~~~lGG~v~~~~~~~~~g-~~~v~~~~~~~~~~l~~~~~~~~~v~~~H~~~v~~---lp~~~~~ 154 (188)
T cd01741 79 AAGKPVLGICLGHQLLARALGGKVGRNPKGWEIG-WFPVTLTEAGKADPLFAGLPDEFPVFHWHGDTVVE---LPPGAVL 154 (188)
T ss_pred HCCCCEEEECccHHHHHHHhCCEEecCCCcceeE-EEEEEeccccccCchhhcCCCcceEEEEeccChhh---CCCCCEE
Confidence 5779999999999999999999999998654444 44454443 23467888888899999999999986 6789999
Q ss_pred EEEcCCCceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHH
Q 027062 174 TAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI 216 (229)
Q Consensus 174 la~~~~~~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~ 216 (229)
+|+++++.+++++.++ ++||+||||| ..+++||+
T Consensus 155 la~~~~~~v~~~~~~~--~~~g~QfHPE-------~~~~~~f~ 188 (188)
T cd01741 155 LASSEACPNQAFRYGD--RALGLQFHPE-------ERLLRNFL 188 (188)
T ss_pred eecCCCCCcceEEecC--CEEEEccCch-------HHHHhhhC
Confidence 9999999999999974 5999999999 68888884
No 43
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.98 E-value=2.9e-31 Score=213.52 Aligned_cols=179 Identities=22% Similarity=0.294 Sum_probs=134.3
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCC--EEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcch-----HHHH-HHH-h
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGY--HFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI-----SLQT-VLE-L 94 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~--~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~-----~~~~-i~~-~ 94 (229)
+|||+|||++.++.+++.++|++.|+ ++.+.. +.++++ ++|+|||+|+.....+... +... ++. .
T Consensus 1 ~~~~~iid~g~gn~~s~~~al~~~g~~~~v~~~~----~~~~l~--~~d~lIlpG~~~~~~~~~~l~~~~~~~~~~~~~~ 74 (209)
T PRK13146 1 MMTVAIIDYGSGNLRSAAKALERAGAGADVVVTA----DPDAVA--AADRVVLPGVGAFADCMRGLRAVGLGEAVIEAVL 74 (209)
T ss_pred CCeEEEEECCCChHHHHHHHHHHcCCCccEEEEC----CHHHhc--CCCEEEECCCCcHHHHHHHHHHCCcHHHHHHHHH
Confidence 47899999999999999999999999 444443 346665 6799999997443221111 1222 232 3
Q ss_pred CCCCcEEEEehhHHHHHHH------------hCCeeeec-CC-----ccccCccceeEeccCCCCcccccCCCceeeeee
Q 027062 95 GPTVPLFGVCMGLQCIGEA------------FGGKIVRS-PL-----GVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRY 156 (229)
Q Consensus 95 ~~~~PvlGIC~G~Qlla~a------------lGg~v~~~-~~-----~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 156 (229)
+.++|+||||+|||+|+.+ ++|++.+. +. .++.| |..+... .++++|+++++.+.++++
T Consensus 75 ~~~~PvlGiC~G~q~l~~~~~e~~~~~glg~l~g~v~~~~~~~~~~~~p~~G-~~~v~~~--~~~~lf~~~~~~~~v~~~ 151 (209)
T PRK13146 75 AAGRPFLGICVGMQLLFERGLEHGDTPGLGLIPGEVVRFQPDGPALKVPHMG-WNTVDQT--RDHPLFAGIPDGARFYFV 151 (209)
T ss_pred hCCCcEEEECHHHHHHhhcccccCCCCCcceEeEEEEEcCCCCCCCccCccC-hHHeeeC--CCChhccCCCCCCEEEEE
Confidence 4789999999999999999 89999886 21 12234 4445443 367899999999999999
Q ss_pred eceeeeccCCCCCCeEEEEEcCCC-ceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHH
Q 027062 157 HSLVIEKESFPSDALEVTAWTEDG-LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 218 (229)
Q Consensus 157 H~~~v~~~~l~~~~~~~la~~~~~-~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~ 218 (229)
|++.+.. ++ +..++|+++.+ .++++..+. ++||+|||||++ ++.|..+++||++.
T Consensus 152 Hs~~v~~---~~-~~~~la~s~~~~~~~a~~~~~--~i~GvQFHPE~s-~~~G~~ll~nfl~~ 207 (209)
T PRK13146 152 HSYYAQP---AN-PADVVAWTDYGGPFTAAVARD--NLFATQFHPEKS-QDAGLALLRNFLAW 207 (209)
T ss_pred eEEEEEc---CC-CCcEEEEEcCCCEEEEEEecC--CEEEEEcCCccc-HHHHHHHHHHHHhh
Confidence 9999975 33 56888988775 577876653 499999999997 67899999999875
No 44
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.98 E-value=6.2e-31 Score=209.65 Aligned_cols=173 Identities=23% Similarity=0.293 Sum_probs=126.1
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcch------HHHHHHHhCCCC
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI------SLQTVLELGPTV 98 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~------~~~~i~~~~~~~ 98 (229)
|+|+|||++.++..++.++|++.|+++.+++.. +++. ++|+|||+| ++.+.+... +.+.+++. ++
T Consensus 1 m~i~iid~g~gn~~s~~~~l~~~g~~~~~v~~~----~~~~--~~d~iIlPG-~G~~~~~~~~l~~~~l~~~i~~~--~~ 71 (196)
T PRK13170 1 MNVVIIDTGCANLSSVKFAIERLGYEPVVSRDP----DVIL--AADKLFLPG-VGTAQAAMDQLRERELIDLIKAC--TQ 71 (196)
T ss_pred CeEEEEeCCCchHHHHHHHHHHCCCeEEEECCH----HHhC--CCCEEEECC-CCchHHHHHHHHHcChHHHHHHc--CC
Confidence 689999999999999999999999999998742 5565 569999955 444433322 23444443 69
Q ss_pred cEEEEehhHHHHHHHhC------------CeeeecCC---ccccCccceeEeccCCCCcccccCCCceeeeeeeceeeec
Q 027062 99 PLFGVCMGLQCIGEAFG------------GKIVRSPL---GVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEK 163 (229)
Q Consensus 99 PvlGIC~G~Qlla~alG------------g~v~~~~~---~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~ 163 (229)
||||||+|||+|+.+++ |++.+... ...+-.|..+... .++++|+++++.+.++++|++.+.
T Consensus 72 PilGIClG~Qll~~~~~~~~~~~~lg~~~g~v~~~~~~~~~~p~~G~~~v~~~--~~~~l~~~l~~~~~v~~~Hs~~lp- 148 (196)
T PRK13170 72 PVLGICLGMQLLGERSEESGGVDCLGIIDGPVKKMTDFGLPLPHMGWNQVTPQ--AGHPLFQGIEDGSYFYFVHSYAMP- 148 (196)
T ss_pred CEEEECHHHHHHhhhcccCCCCCCcccccEEEEECCCCCCCCCccccceeEeC--CCChhhhCCCcCCEEEEECeeecC-
Confidence 99999999999999973 34544320 1123334445443 357899999999999999998763
Q ss_pred cCCCCCCeEEEEEcCCCc-eEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHH
Q 027062 164 ESFPSDALEVTAWTEDGL-IMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 217 (229)
Q Consensus 164 ~~l~~~~~~~la~~~~~~-i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~ 217 (229)
++..++|+++.+. .+++. .+.+ +||+|||||++ .+.|..+|+||++
T Consensus 149 -----~~~~~la~s~~~~~~~~~~-~~~~-i~G~QFHPE~~-~~~G~~~l~nfl~ 195 (196)
T PRK13170 149 -----VNEYTIAQCNYGEPFSAAI-QKDN-FFGVQFHPERS-GAAGAQLLKNFLE 195 (196)
T ss_pred -----CCCcEEEEecCCCeEEEEE-EcCC-EEEEECCCCCc-ccccHHHHHHHhh
Confidence 3456788887654 34443 3334 99999999998 5789999999985
No 45
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.97 E-value=9.5e-31 Score=209.20 Aligned_cols=173 Identities=25% Similarity=0.346 Sum_probs=131.3
Q ss_pred EEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCc------chHHHHHHH-hCCCCc
Q 027062 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS------GISLQTVLE-LGPTVP 99 (229)
Q Consensus 27 ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~------~~~~~~i~~-~~~~~P 99 (229)
|+|||++.++...+.++|+++|+++++++.. ++++ ++|+|||+|| +.+.+. ....+.+++ .++++|
T Consensus 1 i~i~d~g~~~~~~~~~~l~~~g~~v~v~~~~----~~l~--~~d~iiipG~-~~~~~~~~~~~~~~~~~~i~~~~~~~~p 73 (198)
T cd01748 1 IAIIDYGMGNLRSVANALERLGAEVIITSDP----EEIL--SADKLILPGV-GAFGDAMANLRERGLIEALKEAIASGKP 73 (198)
T ss_pred CEEEeCCCChHHHHHHHHHHCCCeEEEEcCh----HHhc--cCCEEEECCC-CcHHHHHHHHHHcChHHHHHHHHHCCCc
Confidence 6899999999999999999999999998843 3454 5799999775 332221 112344544 356899
Q ss_pred EEEEehhHHHHHHH------------hCCeeeecCCc-----cccCccceeEeccCCCCcccccCCCceeeeeeeceeee
Q 027062 100 LFGVCMGLQCIGEA------------FGGKIVRSPLG-----VMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIE 162 (229)
Q Consensus 100 vlGIC~G~Qlla~a------------lGg~v~~~~~~-----~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~ 162 (229)
|||||+|+|+|+.+ ++|++.+.+.+ .++|... +... .++++|+++++.+.++++|++.+.
T Consensus 74 ilGiC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~~~~~~~~~~~~G~~~-v~~~--~~~~lf~~l~~~~~v~~~Hs~~v~ 150 (198)
T cd01748 74 FLGICLGMQLLFESSEEGGGTKGLGLIPGKVVRFPASEGLKVPHMGWNQ-LEIT--KESPLFKGIPDGSYFYFVHSYYAP 150 (198)
T ss_pred EEEECHHHHHhccccccCCCCCCCCCcceEEEECCCCCCceEEEeccce-EEEC--CCChhhhCCCCCCeEEEEeEEEEe
Confidence 99999999999998 88999887532 2455543 3332 367899999999999999999997
Q ss_pred ccCCCCCCeEEEEEcCCC-ceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHH
Q 027062 163 KESFPSDALEVTAWTEDG-LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI 216 (229)
Q Consensus 163 ~~~l~~~~~~~la~~~~~-~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~ 216 (229)
. + +.+.++|+++++ ..+++.. +.+ +||+|||||+. ++.|..+++||+
T Consensus 151 ~---~-~~~~~la~s~~~~~~~~~~~-~~~-i~GvQFHPE~~-~~~g~~~~~nf~ 198 (198)
T cd01748 151 P---D-DPDYILATTDYGGKFPAAVE-KDN-IFGTQFHPEKS-GKAGLKLLKNFL 198 (198)
T ss_pred c---C-CcceEEEEecCCCeEEEEEE-cCC-EEEEECCCccc-cHhHHHHHHhhC
Confidence 4 3 457788988765 4555544 434 99999999998 668999999995
No 46
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.97 E-value=2.4e-30 Score=207.94 Aligned_cols=179 Identities=27% Similarity=0.340 Sum_probs=136.8
Q ss_pred eEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc------hHHHHHHH-hCCCC
Q 027062 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLE-LGPTV 98 (229)
Q Consensus 26 ~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~------~~~~~i~~-~~~~~ 98 (229)
+|+|||++.++..+++++|++.|+++.+++. .+++. ++|+|||+||.. ..+.. ...+.+++ ...++
T Consensus 1 ~i~~~d~~~~~~~~i~~~l~~~G~~v~~~~~----~~~l~--~~d~iiipG~~~-~~~~~~~~~~~~~~~~i~~~~~~~~ 73 (205)
T PRK13141 1 MIAIIDYGMGNLRSVEKALERLGAEAVITSD----PEEIL--AADGVILPGVGA-FPDAMANLRERGLDEVIKEAVASGK 73 (205)
T ss_pred CEEEEEcCCchHHHHHHHHHHCCCeEEEECC----HHHhc--cCCEEEECCCCc-hHHHHHHHHHcChHHHHHHHHHCCC
Confidence 5899999999999999999999999999763 24555 679999988633 21111 12344444 35679
Q ss_pred cEEEEehhHHHHHHH------------hCCeeeecCCc----cccCccceeEeccCCCCcccccCCCceeeeeeeceeee
Q 027062 99 PLFGVCMGLQCIGEA------------FGGKIVRSPLG----VMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIE 162 (229)
Q Consensus 99 PvlGIC~G~Qlla~a------------lGg~v~~~~~~----~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~ 162 (229)
|+||||+|+|+|+.+ ++|++.+.+.+ ..+..+..+... .++++|+.++..+.++.+|++.+.
T Consensus 74 pvlGIC~G~Qll~~~~~~~~~~~~lg~l~g~v~~~~~~~~~~~~~~g~~~i~~~--~~~~l~~~l~~~~~v~~~Hs~~v~ 151 (205)
T PRK13141 74 PLLGICLGMQLLFESSEEFGETEGLGLLPGRVRRFPPEEGLKVPHMGWNQLELK--KESPLLKGIPDGAYVYFVHSYYAD 151 (205)
T ss_pred cEEEECHHHHHhhhccccCCCCCccceEEEEEEEcCCCCCCcccEecCccceeC--CCChhhhCCCCCCEEEEECeeEec
Confidence 999999999999997 67888876521 223334445443 268899999988899999999996
Q ss_pred ccCCCCCCeEEEEEcCCC-ceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHHHH
Q 027062 163 KESFPSDALEVTAWTEDG-LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 220 (229)
Q Consensus 163 ~~~l~~~~~~~la~~~~~-~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~~~ 220 (229)
+++++.++|+++++ .++++...+ ++||+|||||+. .+.+..||+||++.++
T Consensus 152 ----~~~~~~v~a~~~~~~~~~a~~~~~--~i~GvQfHPE~~-~~~g~~l~~~fl~~~~ 203 (205)
T PRK13141 152 ----PCDEEYVAATTDYGVEFPAAVGKD--NVFGAQFHPEKS-GDVGLKILKNFVEMVE 203 (205)
T ss_pred ----cCCcCeEEEEEeCCcEEEEEEecC--CEEEEeCCCccc-hHHHHHHHHHHHHHhh
Confidence 35678899988766 788887644 499999999997 4689999999998774
No 47
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=99.97 E-value=2.4e-31 Score=225.72 Aligned_cols=188 Identities=24% Similarity=0.420 Sum_probs=159.6
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc--hHHHHHHHhCCCCcEE
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG--ISLQTVLELGPTVPLF 101 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~--~~~~~i~~~~~~~Pvl 101 (229)
.-+|+|+|++++|...+.+.++++.++.++++.+ .+...+.+.+|.||||+|||.|+++++ .+...+.+++ +|+|
T Consensus 16 ~d~i~iLD~GaQY~~~I~RrvRel~v~se~~p~~-t~~~~i~~~~~rgiIiSGGP~SVya~dAP~~dp~if~~~--vpvL 92 (552)
T KOG1622|consen 16 FDTILILDFGAQYGKVIDRRVRELNVQSEILPLT-TPAKTITEYGPRGIIISGGPNSVYAEDAPSFDPAIFELG--VPVL 92 (552)
T ss_pred CceEEEEeccchhhHHHHHHHHHHhhhhhhccCC-ChhhhhhcCCceEEEEeCCCCccccCcCCCCChhHhccC--Ccce
Confidence 4579999999999999999999999999999976 667788878999999999999998654 4567777776 9999
Q ss_pred EEehhHHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCcee--eeeeeceeeeccCCCCCCeEEEEEcCC
Q 027062 102 GVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFT--AGRYHSLVIEKESFPSDALEVTAWTED 179 (229)
Q Consensus 102 GIC~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~--~~~~H~~~v~~~~l~~~~~~~la~~~~ 179 (229)
|||+|||+|+..+||.|.+.. .++.|... +..+. ...||+++..... ++..|+|.+.+ ++.++++.|++.+
T Consensus 93 GICYGmQ~i~~~~Gg~V~~~~-~RE~G~~e-I~v~~--~~~lF~~~~~~~~~~VlltHgdsl~~---v~~g~kv~a~s~n 165 (552)
T KOG1622|consen 93 GICYGMQLINKLNGGTVVKGM-VREDGEDE-IEVDD--SVDLFSGLHKTEFMTVLLTHGDSLSK---VPEGFKVVAFSGN 165 (552)
T ss_pred eehhHHHHHHHHhCCcccccc-ccCCCCce-EEcCc--hhhhhhhhcccceeeeeeccccchhh---ccccceeEEeecC
Confidence 999999999999999999876 35566543 33332 4568988875544 89999999987 7899999999999
Q ss_pred CceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHHHHHH
Q 027062 180 GLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRK 222 (229)
Q Consensus 180 ~~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~~~~~ 222 (229)
.++.++.+...+ +||+|||||.++++.|..+++||+-.++..
T Consensus 166 ~~va~i~~e~kk-iyglqfhpEV~~t~~g~~ll~nFl~~vc~~ 207 (552)
T KOG1622|consen 166 KPVAGILNELKK-IYGLQFHPEVTLTPNGKELLKNFLFDVCGC 207 (552)
T ss_pred cceeeehhhhhh-hhcCCCCCcccccCchhHHHHHHHHHHcCC
Confidence 889999998876 999999999999999999999999665543
No 48
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.97 E-value=3.7e-30 Score=205.88 Aligned_cols=175 Identities=25% Similarity=0.267 Sum_probs=128.4
Q ss_pred eEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc------hHHHHHHH-hCCCC
Q 027062 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLE-LGPTV 98 (229)
Q Consensus 26 ~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~------~~~~~i~~-~~~~~ 98 (229)
+|+|||+++++..++.++++..|++++++.. .+++. ++|+||++||. ++.... ...+.+++ ...++
T Consensus 1 ~i~vid~g~gn~~~~~~~l~~~g~~v~~~~~----~~~l~--~~d~lilpG~g-~~~~~~~~l~~~~~~~~i~~~~~~~~ 73 (199)
T PRK13181 1 MIAIIDYGAGNLRSVANALKRLGVEAVVSSD----PEEIA--GADKVILPGVG-AFGQAMRSLRESGLDEALKEHVEKKQ 73 (199)
T ss_pred CEEEEeCCCChHHHHHHHHHHCCCcEEEEcC----hHHhc--cCCEEEECCCC-CHHHHHHHHHHCChHHHHHHHHHCCC
Confidence 3999999999999999999999999988843 35564 67999987753 321110 12334443 45789
Q ss_pred cEEEEehhHHHHHHH-----------hCCeeeecCCc----cccCccceeEeccCCCCcccccCCCceeeeeeeceeeec
Q 027062 99 PLFGVCMGLQCIGEA-----------FGGKIVRSPLG----VMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEK 163 (229)
Q Consensus 99 PvlGIC~G~Qlla~a-----------lGg~v~~~~~~----~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~ 163 (229)
|+||||+|+|+|+.+ +++++.+.+.+ ++.|.. .+... .+++||+++++.+.++++|++.+.+
T Consensus 74 PvlGiC~G~Qll~~~~~~~~~~glg~l~~~v~~~~~~~~~~~~~G~~-~v~~~--~~~~lf~~l~~~~~~~~~Hs~~v~~ 150 (199)
T PRK13181 74 PVLGICLGMQLLFESSEEGNVKGLGLIPGDVKRFRSEPLKVPQMGWN-SVKPL--KESPLFKGIEEGSYFYFVHSYYVPC 150 (199)
T ss_pred CEEEECHhHHHhhhhcccCCcCCcceEEEEEEEcCCCCCCCCccCcc-ccccC--CCChhHcCCCCCCEEEEeCeeEecc
Confidence 999999999999999 78899886532 344543 33322 3678999999989999999999864
Q ss_pred cCCCCCCeEEEEEcCCCc-eEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHH
Q 027062 164 ESFPSDALEVTAWTEDGL-IMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 217 (229)
Q Consensus 164 ~~l~~~~~~~la~~~~~~-i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~ 217 (229)
+ +.+.++|+++.+. .++... +.+ +||+|||||+. .+.+..|++||++
T Consensus 151 ---~-~~~~~lA~s~~~~~~~~~~~-~~~-i~GvQFHPE~~-~~~g~~ll~nfl~ 198 (199)
T PRK13181 151 ---E-DPEDVLATTEYGVPFCSAVA-KDN-IYAVQFHPEKS-GKAGLKLLKNFAE 198 (199)
T ss_pred ---C-CcccEEEEEcCCCEEEEEEE-CCC-EEEEECCCccC-CHHHHHHHHHHHh
Confidence 3 3456889887643 333322 334 99999999997 6789999999985
No 49
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=99.97 E-value=1.1e-29 Score=197.29 Aligned_cols=180 Identities=26% Similarity=0.339 Sum_probs=134.8
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc------hHHHHHHH-hCC
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLE-LGP 96 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~------~~~~~i~~-~~~ 96 (229)
+|+|+|||.+.+..+++.++|+++|+++.+... .+++.. .|+||++| .|+..+.- .+++.+++ ...
T Consensus 1 m~~i~IIDyg~GNL~Sv~~Aler~G~~~~vs~d----~~~i~~--AD~liLPG-VGaf~~am~~L~~~gl~~~i~~~~~~ 73 (204)
T COG0118 1 MMMVAIIDYGSGNLRSVKKALERLGAEVVVSRD----PEEILK--ADKLILPG-VGAFGAAMANLRERGLIEAIKEAVES 73 (204)
T ss_pred CCEEEEEEcCcchHHHHHHHHHHcCCeeEEecC----HHHHhh--CCEEEecC-CCCHHHHHHHHHhcchHHHHHHHHhc
Confidence 478999999888999999999999999987762 466764 49999876 44433221 12444444 345
Q ss_pred CCcEEEEehhHHHHHHH------------hCCeeeecCC---ccccCccceeEeccCCCCcccccCCCceeeeeeeceee
Q 027062 97 TVPLFGVCMGLQCIGEA------------FGGKIVRSPL---GVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVI 161 (229)
Q Consensus 97 ~~PvlGIC~G~Qlla~a------------lGg~v~~~~~---~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v 161 (229)
++|+||||+|||+|.+. +.|+|.+.+. ...|.+|+.+... ..++||+++++.-.+|+.|+|.+
T Consensus 74 ~kP~LGIClGMQlLfe~SeE~~~~~GLg~i~G~V~r~~~~~~kvPHMGWN~l~~~--~~~~l~~gi~~~~~~YFVHSY~~ 151 (204)
T COG0118 74 GKPFLGICLGMQLLFERSEEGGGVKGLGLIPGKVVRFPAEDLKVPHMGWNQVEFV--RGHPLFKGIPDGAYFYFVHSYYV 151 (204)
T ss_pred CCCEEEEeHhHHhhhhcccccCCCCCcceecceEEEcCCCCCCCCccccceeecc--CCChhhcCCCCCCEEEEEEEEee
Confidence 69999999999999874 5577777642 2347777777665 47899999988778999999999
Q ss_pred eccCCCCCCeEEEEEcCCC-ceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHHH
Q 027062 162 EKESFPSDALEVTAWTEDG-LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI 219 (229)
Q Consensus 162 ~~~~l~~~~~~~la~~~~~-~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~~ 219 (229)
.+ .+.-.++++++.+ .+.|...++ +++|+|||||++ +..|.++++||++.+
T Consensus 152 ~~----~~~~~v~~~~~YG~~f~AaV~k~--N~~g~QFHPEKS-g~~Gl~lL~NFl~~~ 203 (204)
T COG0118 152 PP----GNPETVVATTDYGEPFPAAVAKD--NVFGTQFHPEKS-GKAGLKLLKNFLEWI 203 (204)
T ss_pred cC----CCCceEEEeccCCCeeEEEEEeC--CEEEEecCcccc-hHHHHHHHHHHHhhc
Confidence 74 2334567767666 455554554 499999999997 678999999999864
No 50
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.97 E-value=1e-29 Score=201.40 Aligned_cols=172 Identities=23% Similarity=0.331 Sum_probs=129.2
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc----hHHHHHHH-hCCCC
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG----ISLQTVLE-LGPTV 98 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~----~~~~~i~~-~~~~~ 98 (229)
+|+|.|++..+.+... .++|+..|+++..++. .++++ ++|||||+||+.+..+.. .+.+.+++ .++++
T Consensus 1 ~m~~~i~~~~g~~~~~-~~~l~~~g~~~~~~~~----~~~l~--~~dgiii~GG~~~~~~~~~~~~~~~~~i~~~~~~g~ 73 (189)
T PRK13525 1 MMKIGVLALQGAVREH-LAALEALGAEAVEVRR----PEDLD--EIDGLILPGGESTTMGKLLRDFGLLEPLREFIASGL 73 (189)
T ss_pred CCEEEEEEcccCHHHH-HHHHHHCCCEEEEeCC----hhHhc--cCCEEEECCCChHHHHHHHHhccHHHHHHHHHHCCC
Confidence 4689999987666655 4778999999988863 24554 579999999987654322 12344444 35789
Q ss_pred cEEEEehhHHHHHHHhCC-----------eeeecCCccccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccCCC
Q 027062 99 PLFGVCMGLQCIGEAFGG-----------KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFP 167 (229)
Q Consensus 99 PvlGIC~G~Qlla~alGg-----------~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~ 167 (229)
|++|||+|+|+|+.++|| ++.+++.++..|.. ..+.++.++++.+.++++|+|.|.. +
T Consensus 74 PilGIC~G~QlL~~~~gg~~~~~lg~~~~~v~~~~~g~~~g~~--------~~~~~~~~~~~~~~~~~~H~d~v~~---l 142 (189)
T PRK13525 74 PVFGTCAGMILLAKEIEGYEQEHLGLLDITVRRNAFGRQVDSF--------EAELDIKGLGEPFPAVFIRAPYIEE---V 142 (189)
T ss_pred eEEEECHHHHHHHhhcccCCCCceeeEEEEEEEccCCCceeeE--------EecccccCCCCCeEEEEEeCceeec---c
Confidence 999999999999999998 56665544433321 1245677777789999999999976 6
Q ss_pred CCCeEEEEEcCCCceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHHHH
Q 027062 168 SDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 220 (229)
Q Consensus 168 ~~~~~~la~~~~~~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~~~ 220 (229)
|++++++|+++. .+++++.+ ++||+|||||+.. ..+||+||++.|.
T Consensus 143 p~~~~vlA~~~~-~~~~~~~~---~~~g~QfHPE~~~---~~~~~~~f~~~~~ 188 (189)
T PRK13525 143 GPGVEVLATVGG-RIVAVRQG---NILATSFHPELTD---DTRVHRYFLEMVK 188 (189)
T ss_pred CCCcEEEEEcCC-EEEEEEeC---CEEEEEeCCccCC---CchHHHHHHHHhh
Confidence 799999999875 55677653 4999999999973 3799999998875
No 51
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.97 E-value=3.1e-30 Score=204.59 Aligned_cols=151 Identities=23% Similarity=0.368 Sum_probs=118.9
Q ss_pred CCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhc--cCCCEEEECCCCCCCCC--------------cc--hH-HHHHHH
Q 027062 33 YDSFTYNLCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQD--------------SG--IS-LQTVLE 93 (229)
Q Consensus 33 ~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~--~~~dgiii~GG~~~~~~--------------~~--~~-~~~i~~ 93 (229)
++++..++.++|+.+|+.+.+++++. +.++++. .++|||||+||++...+ .. .+ .+.++.
T Consensus 17 ~~~~~~~~~~~l~~~G~~~~iv~~~~-~~~~~~~~l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 95 (189)
T cd01745 17 RDYLNQYYVDAVRKAGGLPVLLPPVD-DEEDLEQYLELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLRA 95 (189)
T ss_pred HHHHHHHHHHHHHHCCCEEEEeCCCC-ChHHHHHHHhhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHHHHHHHHHH
Confidence 35567889999999999999998763 3333322 26899999999865321 00 11 233333
Q ss_pred -hCCCCcEEEEehhHHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccCCCCCCeE
Q 027062 94 -LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALE 172 (229)
Q Consensus 94 -~~~~~PvlGIC~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~~~ 172 (229)
++.++|+||||+|||+|+.++||+|.+.+ .++++|++.|.. ++++++
T Consensus 96 ~~~~~~PilgiC~G~Q~l~~~~Gg~v~~~~-----------------------------~v~~~H~~~v~~---~~~~~~ 143 (189)
T cd01745 96 ALERGKPILGICRGMQLLNVALGGTLYQDI-----------------------------RVNSLHHQAIKR---LADGLR 143 (189)
T ss_pred HHHCCCCEEEEcchHHHHHHHhCCeEEcCC-----------------------------ceechHHHHHhh---cCCCCE
Confidence 35689999999999999999999997654 467789999976 578999
Q ss_pred EEEEcCCCceEEEEeCCCCcEEEEeccCCCCCC--CchHHHHHHHH
Q 027062 173 VTAWTEDGLIMAARHKKYKHLQGVQFHPESIIT--TEGKTIVRNFI 216 (229)
Q Consensus 173 ~la~~~~~~i~a~~~~~~~~i~g~QfHPE~~~~--~~~~~i~~~f~ 216 (229)
++|+++++.++|++++++++++|+|||||+..+ +++.+||++|+
T Consensus 144 vla~~~d~~vea~~~~~~~~~~gvQfHPE~~~~~~~~~~~if~~f~ 189 (189)
T cd01745 144 VEARAPDGVIEAIESPDRPFVLGVQWHPEWLADTDPDSLKLFEAFV 189 (189)
T ss_pred EEEECCCCcEEEEEeCCCCeEEEEecCCCcCcccCchHhHHHHHhC
Confidence 999999999999999873359999999999987 68999999994
No 52
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.97 E-value=2e-29 Score=201.74 Aligned_cols=179 Identities=26% Similarity=0.328 Sum_probs=131.2
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchH----HHHHHH-hCCCCc
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGIS----LQTVLE-LGPTVP 99 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~----~~~i~~-~~~~~P 99 (229)
|||+|||+++++...+.++|+++|+++.+++. .+++. ++|+|||+||.. ..+...+ .+.+++ .++++|
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~----~~~~~--~~d~iii~G~~~-~~~~~~~~~~~~~~i~~~~~~~~P 73 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSD----PEEIL--DADGIVLPGVGA-FGAAMENLSPLRDVILEAARSGKP 73 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECC----HHHHc--cCCEEEECCCCC-HHHHHHHHHHHHHHHHHHHHcCCC
Confidence 68999999999999999999999999998853 24554 679999988532 2222222 233443 457899
Q ss_pred EEEEehhHHHHHHH------------hCCeeeecCCcc--ccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccC
Q 027062 100 LFGVCMGLQCIGEA------------FGGKIVRSPLGV--MHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKES 165 (229)
Q Consensus 100 vlGIC~G~Qlla~a------------lGg~v~~~~~~~--~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~ 165 (229)
+||||+|+|+|+.+ +||++.+.+.+. .+..+..+... .++++|+++++ ..++++|++.+.+
T Consensus 74 ilgIC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~~~~~~~~~~g~~~v~~~--~~~~l~~~l~~-~~~~~~Hs~~~~~-- 148 (200)
T PRK13143 74 FLGICLGMQLLFESSEEGGGVRGLGLFPGRVVRFPAGVKVPHMGWNTVKVV--KDCPLFEGIDG-EYVYFVHSYYAYP-- 148 (200)
T ss_pred EEEECHHHHHHhhhhccCCCCCCcceeeEEEEEcCCCCCCCeecceEEEEc--CCChhhccCCC-cEEEEEeeeeeCC--
Confidence 99999999999986 688888754211 12234444443 36789988854 4578899998863
Q ss_pred CCCCCeEEEEEcCCC-ceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHHHH
Q 027062 166 FPSDALEVTAWTEDG-LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 220 (229)
Q Consensus 166 l~~~~~~~la~~~~~-~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~~~ 220 (229)
++++.++|+++++ .++++..++ ++||+|||||+. .+.|.+||++|++.+.
T Consensus 149 --~~~~~~la~~~~~~~~~~~~~~~--~~~gvQfHPE~~-~~~g~~i~~~f~~~~~ 199 (200)
T PRK13143 149 --DDEDYVVATTDYGIEFPAAVCND--NVFGTQFHPEKS-GETGLKILENFVELIK 199 (200)
T ss_pred --CCcceEEEEEcCCCEEEEEEEcC--CEEEEeCCCccc-hHHHHHHHHHHHHHHh
Confidence 4668899998875 556665554 499999999997 5689999999998763
No 53
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=99.97 E-value=1.3e-29 Score=203.40 Aligned_cols=179 Identities=17% Similarity=0.185 Sum_probs=128.2
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc------hHHHHHHH-hCC
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLE-LGP 96 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~------~~~~~i~~-~~~ 96 (229)
+|+|.|||...+...++.++++.+|+++.+++.+ +++. ++|+||++| ++++.... .+.+.+++ +.+
T Consensus 1 ~~~v~iid~~~GN~~sl~~al~~~g~~v~vv~~~----~~l~--~~d~iIlPG-~g~~~~~~~~l~~~gl~~~i~~~~~~ 73 (210)
T CHL00188 1 MMKIGIIDYSMGNLHSVSRAIQQAGQQPCIINSE----SELA--QVHALVLPG-VGSFDLAMKKLEKKGLITPIKKWIAE 73 (210)
T ss_pred CcEEEEEEcCCccHHHHHHHHHHcCCcEEEEcCH----HHhh--hCCEEEECC-CCchHHHHHHHHHCCHHHHHHHHHHc
Confidence 3679999998788899999999999999988642 4554 569988755 55543221 12233433 456
Q ss_pred CCcEEEEehhHHHHHHH-----------hCCeeeecCC----ccccCccceeEeccCC----CCcccccCCCceeeeeee
Q 027062 97 TVPLFGVCMGLQCIGEA-----------FGGKIVRSPL----GVMHGKSSLVYYDEKG----EDGLLAGLSNPFTAGRYH 157 (229)
Q Consensus 97 ~~PvlGIC~G~Qlla~a-----------lGg~v~~~~~----~~~~g~~~~~~~~~~~----~~~l~~~l~~~~~~~~~H 157 (229)
++|+||||+|||+|++. +.|+|.+.+. ...+.+|..+...... +++||+++++.+.++++|
T Consensus 74 ~~pvlGIClG~Qll~~~~~~~~~~glg~~~G~v~~~~~~~~~~~p~~Gw~~v~~~~~~~~~~~~~lf~~l~~~~~v~~~H 153 (210)
T CHL00188 74 GNPFIGICLGLHLLFETSEEGKEEGLGIYKGQVKRLKHSPVKVIPHMGWNRLECQNSECQNSEWVNWKAWPLNPWAYFVH 153 (210)
T ss_pred CCCEEEECHHHHHHhhccccCCcCCccceeEEEEECCCCCCCccCccCCccceecCCcccccCChhhcCCCCCCEEEEeC
Confidence 89999999999999986 5566766631 1123345555544321 156999999999999999
Q ss_pred ceeeeccCCCCCCeEEEEEc----CCCceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHH
Q 027062 158 SLVIEKESFPSDALEVTAWT----EDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 218 (229)
Q Consensus 158 ~~~v~~~~l~~~~~~~la~~----~~~~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~ 218 (229)
++.+.+ ++...++.+ .++.+++++.. ++||+|||||++ ++.|..|++||++.
T Consensus 154 S~~v~p-----~~~~~l~~t~~~~~~~~v~a~~~~---~i~GvQFHPE~s-~~~G~~il~nfl~~ 209 (210)
T CHL00188 154 SYGVMP-----KSQACATTTTFYGKQQMVAAIEYD---NIFAMQFHPEKS-GEFGLWLLREFMKK 209 (210)
T ss_pred ccEecC-----CCCceEEEEEecCCcceEEEEecC---CEEEEecCCccc-cHhHHHHHHHHHhh
Confidence 999853 233334433 24559999863 499999999998 88999999999875
No 54
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=99.97 E-value=1.8e-29 Score=200.84 Aligned_cols=178 Identities=22% Similarity=0.336 Sum_probs=128.6
Q ss_pred HHHHHHHHHcCCEEEEEeCC--ccCHHHHhccCCCEEEECCCCCCCC---------------C--cchH-HHHHH-HhCC
Q 027062 38 YNLCQYMGELGYHFEVYRND--ELTVEELKRKNPRGVLISPGPGAPQ---------------D--SGIS-LQTVL-ELGP 96 (229)
Q Consensus 38 ~~~~~~l~~~g~~~~v~~~~--~~~~~~l~~~~~dgiii~GG~~~~~---------------~--~~~~-~~~i~-~~~~ 96 (229)
..++++...+|.-+.+++.- ......+.+ ..|||||+|| .++. + .+.+ +..++ ++++
T Consensus 29 ~~yv~ai~~aGg~pillP~~~d~~~~~~~l~-~iDgliltGg-~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~ 106 (243)
T COG2071 29 YDYVDAIIKAGGIPILLPALEDPEDARQYLD-LIDGLILTGG-SNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALER 106 (243)
T ss_pred HHHHHHHHHcCCceEEecCCCCHHHHHHHHh-hccEEEecCC-CcCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHc
Confidence 55788887888888777732 122222222 5799999999 3221 0 1112 34444 4688
Q ss_pred CCcEEEEehhHHHHHHHhCCeeeecCCc----cccC-------ccceeEeccCCCCcccccCCCc-eeeeeeeceeeecc
Q 027062 97 TVPLFGVCMGLQCIGEAFGGKIVRSPLG----VMHG-------KSSLVYYDEKGEDGLLAGLSNP-FTAGRYHSLVIEKE 164 (229)
Q Consensus 97 ~~PvlGIC~G~Qlla~alGg~v~~~~~~----~~~g-------~~~~~~~~~~~~~~l~~~l~~~-~~~~~~H~~~v~~~ 164 (229)
++||||||+|+|+|+.++||++.+.-.. ..|. ..+.+.+. ..+.|.+-+++. +.++++|++++.+
T Consensus 107 ~iPILgICRG~QllNVa~GGtL~q~i~~~~~~~~H~~~~~~~~~~H~V~i~--~~s~La~i~g~~~~~VNS~HhQaIk~- 183 (243)
T COG2071 107 GIPILGICRGLQLLNVALGGTLYQDISEQPGHIDHRQPNPVHIESHEVHIE--PGSKLAKILGESEFMVNSFHHQAIKK- 183 (243)
T ss_pred CCCEEEEccchHHHHHHhcCeeehhhhcccccccccCCCCcccceeEEEec--CCccHHHhcCccceeecchHHHHHHH-
Confidence 9999999999999999999999875310 0111 12223322 244555555545 8999999999988
Q ss_pred CCCCCCeEEEEEcCCCceEEEEeCCCCcEEEEeccCCCCCCC--chHHHHHHHHHHHHHH
Q 027062 165 SFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITT--EGKTIVRNFIKMIVRK 222 (229)
Q Consensus 165 ~l~~~~~~~la~~~~~~i~a~~~~~~~~i~g~QfHPE~~~~~--~~~~i~~~f~~~~~~~ 222 (229)
+.+++++.|.++|+.|||+++++..+++|+|||||+.... ..+.||+.|.+.+..+
T Consensus 184 --La~~L~V~A~a~DG~VEAie~~~~~fvlGVQWHPE~~~~~~~~~~~LFe~F~~~~~~~ 241 (243)
T COG2071 184 --LAPGLVVEARAPDGTVEAVEVKNDAFVLGVQWHPEYLVDTNPLSLALFEAFVNACKKH 241 (243)
T ss_pred --hCCCcEEEEECCCCcEEEEEecCCceEEEEecChhhhccCChHHHHHHHHHHHHHHhh
Confidence 7899999999999999999999867899999999998654 5789999999998865
No 55
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.97 E-value=6.1e-29 Score=199.07 Aligned_cols=173 Identities=20% Similarity=0.304 Sum_probs=127.2
Q ss_pred EEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcch------HHHHHHH--hCCCC
Q 027062 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI------SLQTVLE--LGPTV 98 (229)
Q Consensus 27 ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~------~~~~i~~--~~~~~ 98 (229)
|+|||++.++.+++.++|++.|+++.+++.. +++. ++|+|||+ |++++.+... +...+++ ++.++
T Consensus 2 i~iid~g~~n~~~v~~~l~~~g~~~~~~~~~----~~l~--~~d~lilP-G~g~~~~~~~~l~~~~~~~~l~~~~~~~~~ 74 (201)
T PRK13152 2 IALIDYKAGNLNSVAKAFEKIGAINFIAKNP----KDLQ--KADKLLLP-GVGSFKEAMKNLKELGFIEALKEQVLVQKK 74 (201)
T ss_pred EEEEECCCCcHHHHHHHHHHCCCeEEEECCH----HHHc--CCCEEEEC-CCCchHHHHHHHHHcCcHHHHHHHHHhCCC
Confidence 8999999999999999999999998887643 4554 57999995 4555543322 1233433 46789
Q ss_pred cEEEEehhHHHHHHH------------hCCeeeecCC----ccccCccceeEeccCCCCcccccCCCceeeeeeeceeee
Q 027062 99 PLFGVCMGLQCIGEA------------FGGKIVRSPL----GVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIE 162 (229)
Q Consensus 99 PvlGIC~G~Qlla~a------------lGg~v~~~~~----~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~ 162 (229)
|+||||+|||+|+.+ ++|+|.+... ...++.|..+... .++++|+++++.+.++++|++.+.
T Consensus 75 pvlGiC~G~Q~l~~~~~~~~~~~~lg~~~g~v~~~~~~~~~~~~~~g~~~v~~~--~~~~l~~~l~~~~~~~~vHS~~v~ 152 (201)
T PRK13152 75 PILGICLGMQLFLERGYEGGVCEGLGFIEGEVVKFEEDLNLKIPHMGWNELEIL--KQSPLYQGIPEKSDFYFVHSFYVK 152 (201)
T ss_pred cEEEECHhHHHHhhcccccCCcCCcccccEEEEECCCCCCCcCCccCeEEEEEC--CCChhhhCCCCCCeEEEEcccEee
Confidence 999999999999997 2266765431 1235566666554 367899999888999999999997
Q ss_pred ccCCCCCCeEEEEEcCCC--ceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHH
Q 027062 163 KESFPSDALEVTAWTEDG--LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 217 (229)
Q Consensus 163 ~~~l~~~~~~~la~~~~~--~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~ 217 (229)
. ++ ..+.+.++++ .+++++. . ++||+|||||++ .+.|..||+||++
T Consensus 153 ~---~~--~~v~a~~~~g~~~~~a~~~--~-~i~GvQFHPE~~-~~~g~~ll~~Fl~ 200 (201)
T PRK13152 153 C---KD--EFVSAKAQYGHKFVASLQK--D-NIFATQFHPEKS-QNLGLKLLENFAR 200 (201)
T ss_pred c---CC--CcEEEEECCCCEEEEEEec--C-CEEEEeCCCeec-ChhhHHHHHHHHh
Confidence 4 32 3566766655 4556663 2 499999999998 5689999999986
No 56
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=99.96 E-value=6.8e-29 Score=198.00 Aligned_cols=173 Identities=23% Similarity=0.254 Sum_probs=126.2
Q ss_pred EEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchH-----HHHH-H-HhCCCCc
Q 027062 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGIS-----LQTV-L-ELGPTVP 99 (229)
Q Consensus 27 ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~-----~~~i-~-~~~~~~P 99 (229)
|+|||++.++...+.++|+..|+++.+++.+ ++++ ++|+|||+|+ +++.+...+ .+.+ + .++.++|
T Consensus 1 ~~~~~~~~gn~~~l~~~l~~~g~~v~v~~~~----~~l~--~~d~lii~G~-~~~~~~~~~l~~~~~~~l~~~~~~~~~p 73 (196)
T TIGR01855 1 IVIIDYGVGNLGSVKRALKRVGAEPVVVKDS----KEAE--LADKLILPGV-GAFGAAMARLRENGLDLFVELVVRLGKP 73 (196)
T ss_pred CEEEecCCcHHHHHHHHHHHCCCcEEEEcCH----HHhc--cCCEEEECCC-CCHHHHHHHHHHcCcHHHHHHHHhCCCC
Confidence 6899999999999999999999999999843 3454 5799999773 333221111 1233 3 3456799
Q ss_pred EEEEehhHHHHHHH------------hCCeeeecCC--ccccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccC
Q 027062 100 LFGVCMGLQCIGEA------------FGGKIVRSPL--GVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKES 165 (229)
Q Consensus 100 vlGIC~G~Qlla~a------------lGg~v~~~~~--~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~ 165 (229)
+||||+|+|+|+.+ +||+|.+.+. ..+.|.. .+. ...+++||+++++.+.+++||++.+++
T Consensus 74 vlGiC~G~Qll~~~~~~~~~~~glg~~~~~v~~~~~~~~~~~g~~-~~~--~~~~~~l~~~l~~~~~v~~~Hs~~v~~-- 148 (196)
T TIGR01855 74 VLGICLGMQLLFERSEEGGGVPGLGLIKGNVVKLEARKVPHMGWN-EVH--PVKESPLLNGIDEGAYFYFVHSYYAVC-- 148 (196)
T ss_pred EEEECHHHHHhhhccccCCCCCCcceeeEEEEECCCCCCCcccCe-eee--eCCCChHHhCCCCCCEEEEECeeEecC--
Confidence 99999999999999 7889988742 2233332 222 234678999999999999999999974
Q ss_pred CCCCCeEEEEEcCC-CceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHH
Q 027062 166 FPSDALEVTAWTED-GLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 217 (229)
Q Consensus 166 l~~~~~~~la~~~~-~~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~ 217 (229)
++ +. +++.+++ +..+++.. +.+ +||+|||||+. .+.+..+++||++
T Consensus 149 -~~-~~-~~a~~~~g~~~~~~~~-~~~-i~GvQFHPE~~-~~~g~~ll~~f~~ 195 (196)
T TIGR01855 149 -EE-EA-VLAYADYGEKFPAAVQ-KGN-IFGTQFHPEKS-GKTGLKLLENFLE 195 (196)
T ss_pred -CC-Cc-EEEEEcCCcEEEEEEe-cCC-EEEEECCCccC-cHhHHHHHHHHHh
Confidence 33 44 5665555 45555444 434 99999999987 5689999999986
No 57
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.96 E-value=3e-28 Score=195.59 Aligned_cols=178 Identities=22% Similarity=0.256 Sum_probs=126.0
Q ss_pred EEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc------hHHHHHHH-hCCCCc
Q 027062 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLE-LGPTVP 99 (229)
Q Consensus 27 ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~------~~~~~i~~-~~~~~P 99 (229)
|+|||.+.+...++.++++..+.++.++.. .+++. ++|+||++|+. ++.+.- .+...+++ ..+++|
T Consensus 2 i~iidyg~gNl~s~~~al~~~~~~~~~~~~----~~~l~--~~d~iIlPG~g-~~~~~~~~l~~~gl~~~i~~~~~~~~p 74 (210)
T PRK14004 2 IAILDYGMGNIHSCLKAVSLYTKDFVFTSD----PETIE--NSKALILPGDG-HFDKAMENLNSTGLRSTIDKHVESGKP 74 (210)
T ss_pred EEEEECCCchHHHHHHHHHHcCCeEEEECC----HHHhc--cCCEEEECCCC-chHHHHHHHHHcCcHHHHHHHHHcCCC
Confidence 899999888999999999999998887642 45665 66999988774 332211 12333433 457899
Q ss_pred EEEEehhHHHHHHHhC------------------CeeeecCC---ccccCccceeEeccCCCCcccccCCCceeeeeeec
Q 027062 100 LFGVCMGLQCIGEAFG------------------GKIVRSPL---GVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHS 158 (229)
Q Consensus 100 vlGIC~G~Qlla~alG------------------g~v~~~~~---~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~ 158 (229)
+||||+|||+|+.+++ |+|.+.+. ...|..|..+......++++|+++++.+.+++||+
T Consensus 75 ilGiC~G~Q~l~~~~~e~~~~~~~~~~~Glg~~~~~v~~~~~~~~~~ph~Gw~~v~~~~~~~~~lf~~l~~~~~v~~~HS 154 (210)
T PRK14004 75 LFGICIGFQILFESSEETNQGTKKEQIEGLGYIKGKIKKFEGKDFKVPHIGWNRLQIRRKDKSKLLKGIGDQSFFYFIHS 154 (210)
T ss_pred EEEECHhHHHHHHhcccccCCCcCcccCCcceeEEEEEEcCCCCCcCCccCcccceeccCCCCccccCCCCCCEEEEece
Confidence 9999999999999764 55555431 12344555555443346789999999999999999
Q ss_pred eeeeccCCCCCCeEEEEEcCC-C-ceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHH
Q 027062 159 LVIEKESFPSDALEVTAWTED-G-LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 218 (229)
Q Consensus 159 ~~v~~~~l~~~~~~~la~~~~-~-~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~ 218 (229)
+.+.. +..+.+++.++. + .++++..++ ++||+|||||++. +.|..|++||++.
T Consensus 155 ~~~~~----~~~l~~sa~~~~~g~~~~a~~~~~--~i~GvQFHPE~s~-~~G~~iL~nfl~~ 209 (210)
T PRK14004 155 YRPTG----AEGNAITGLCDYYQEKFPAVVEKE--NIFGTQFHPEKSH-THGLKLLENFIEF 209 (210)
T ss_pred eecCC----CCcceEEEeeeECCEEEEEEEecC--CEEEEeCCcccCc-hhHHHHHHHHHhh
Confidence 96532 233445555543 3 245666443 4999999999986 6999999999874
No 58
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.96 E-value=5.6e-28 Score=193.41 Aligned_cols=180 Identities=21% Similarity=0.304 Sum_probs=127.5
Q ss_pred eEEEEECCC-chhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc----hHHHHHHH-hCCCCc
Q 027062 26 PIIVIDNYD-SFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG----ISLQTVLE-LGPTVP 99 (229)
Q Consensus 26 ~ilvid~~~-~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~----~~~~~i~~-~~~~~P 99 (229)
-|+++++.. .+...+.++++..|.+++++.... .+++. ++|+|||+||+++..+.. ...+.+++ ...++|
T Consensus 4 ~vl~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~~--~~~l~--~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~p 79 (200)
T PRK13527 4 GVLALQGDVEEHIDALKRALDELGIDGEVVEVRR--PGDLP--DCDALIIPGGESTTIGRLMKREGILDEIKEKIEEGLP 79 (200)
T ss_pred EEEEECCccHHHHHHHHHHHHhcCCCeEEEEeCC--hHHhc--cCCEEEECCCcHHHHHHHHhhccHHHHHHHHHHCCCe
Confidence 456666422 245678899999999888877642 34554 679999999988764221 12445554 356899
Q ss_pred EEEEehhHHHHHHHhCCe-eeecCCccccCccceeEec--cC------CCCcccccCCCceeeeeeeceeeeccCCCCCC
Q 027062 100 LFGVCMGLQCIGEAFGGK-IVRSPLGVMHGKSSLVYYD--EK------GEDGLLAGLSNPFTAGRYHSLVIEKESFPSDA 170 (229)
Q Consensus 100 vlGIC~G~Qlla~alGg~-v~~~~~~~~~g~~~~~~~~--~~------~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~ 170 (229)
+||||+|+|+|+.++||. +...+ ..+.|........ .. ..+.+|.++++.+.++++|++.+.. +|++
T Consensus 80 ilGIC~G~Qll~~~~gg~~v~~~~-~~~lG~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~H~~~v~~---lp~~ 155 (200)
T PRK13527 80 ILGTCAGLILLAKEVGDDRVTKTE-QPLLGLMDVTVKRNAFGRQRDSFEAEIDLSGLDGPFHAVFIRAPAITK---VGGD 155 (200)
T ss_pred EEEECHHHHHHHhhhcCCccCCCC-CceeeeeEEEEeeccccCccccEEEeEeccccCCcceEEEEccccccc---cCCC
Confidence 999999999999999984 43332 3445543321111 00 1234677788899999999999976 6799
Q ss_pred eEEEEEcCCCceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHHHH
Q 027062 171 LEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 220 (229)
Q Consensus 171 ~~~la~~~~~~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~~~ 220 (229)
++++|+++++.+ +++.. ++||+|||||.+. + ..|+++|++.+.
T Consensus 156 ~~~la~~~~~~~-a~~~~---~~~g~QfHPE~~~--~-~~l~~~f~~~~~ 198 (200)
T PRK13527 156 VEVLAKLDDRIV-AVEQG---NVLATAFHPELTD--D-TRIHEYFLKKVK 198 (200)
T ss_pred eEEEEEECCEEE-EEEEC---CEEEEEeCCCCCC--C-CHHHHHHHHHHh
Confidence 999999988855 66642 4999999999863 2 799999999874
No 59
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=99.96 E-value=1.1e-28 Score=189.98 Aligned_cols=164 Identities=21% Similarity=0.315 Sum_probs=130.9
Q ss_pred CCchhHHHHHHHHHcCCEEEEEeCC--ccC-HHHHhccCCCEEEECCCCCCCCCcchHHHHHH----Hh-CCCCcEEEEe
Q 027062 33 YDSFTYNLCQYMGELGYHFEVYRND--ELT-VEELKRKNPRGVLISPGPGAPQDSGISLQTVL----EL-GPTVPLFGVC 104 (229)
Q Consensus 33 ~~~~~~~~~~~l~~~g~~~~v~~~~--~~~-~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~----~~-~~~~PvlGIC 104 (229)
|++|...++..|.+.|..+..++.. +.| .++++ +|+|++|+|+..+..++..|+..+. ++ ..++||+|||
T Consensus 23 yGgy~nvfvsllg~ege~wd~frV~~gefP~~~Dl~--ky~gfvIsGS~~dAf~d~dWI~KLcs~~kkld~mkkkvlGIC 100 (245)
T KOG3179|consen 23 YGGYFNVFVSLLGDEGEQWDLFRVIDGEFPQEEDLE--KYDGFVISGSKHDAFSDADWIKKLCSFVKKLDFMKKKVLGIC 100 (245)
T ss_pred hcCHHHHHHHHhcccCceeEEEEEecCCCCChhhhh--hhceEEEeCCcccccccchHHHHHHHHHHHHHhhccceEEEe
Confidence 4556677888899999998877642 233 24555 6899999999999888888865543 22 3569999999
Q ss_pred hhHHHHHHHhCCeeeecCCccccCccceeEecc-CCCCcccccCCCceeeeeeeceeeeccCCCCCCeEEEEEcCCCceE
Q 027062 105 MGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDE-KGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIM 183 (229)
Q Consensus 105 ~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~-~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~~~~la~~~~~~i~ 183 (229)
+|||++|.+.||+|.+++.|+..+....+.+.. ..+..+|..+|..+.+...|+|.|-. +|++++++|+|++|.+|
T Consensus 101 FGHQiiara~Gg~Vgra~KG~~~~lg~itivk~~~~~~~yFG~~~~~l~IikcHqDevle---~PE~a~llasSe~ceve 177 (245)
T KOG3179|consen 101 FGHQIIARAKGGKVGRAPKGPDLGLGSITIVKDAEKPEKYFGEIPKSLNIIKCHQDEVLE---LPEGAELLASSEKCEVE 177 (245)
T ss_pred ccHHHHHHhhCCccccCCCCCcccccceEEEEecccchhhcccchhhhhHHhhcccceec---CCchhhhhccccccceE
Confidence 999999999999999999886555444333322 23567888888999999999999976 78999999999999999
Q ss_pred EEEeCCCCcEEEEeccCCCC
Q 027062 184 AARHKKYKHLQGVQFHPESI 203 (229)
Q Consensus 184 a~~~~~~~~i~g~QfHPE~~ 203 (229)
.+...+ +++++|.|||+.
T Consensus 178 ~fs~~~--~~l~fQGHPEyn 195 (245)
T KOG3179|consen 178 MFSIED--HLLCFQGHPEYN 195 (245)
T ss_pred EEEecc--eEEEecCCchhh
Confidence 999987 699999999995
No 60
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=99.96 E-value=1.8e-28 Score=199.92 Aligned_cols=183 Identities=20% Similarity=0.243 Sum_probs=122.5
Q ss_pred ECCCchhHHHHHHHHHcCCEEEEEeCCccC--H----HHHhccCCCEEEECCCCCCCCCcchHHHHHH-HhCCCCcEEEE
Q 027062 31 DNYDSFTYNLCQYMGELGYHFEVYRNDELT--V----EELKRKNPRGVLISPGPGAPQDSGISLQTVL-ELGPTVPLFGV 103 (229)
Q Consensus 31 d~~~~~~~~~~~~l~~~g~~~~v~~~~~~~--~----~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~-~~~~~~PvlGI 103 (229)
|+|+++..++..++.+.+.++.+...+... . +.+. ++||||++||++.+...... ..++ .+++++|+|||
T Consensus 14 day~s~~~~L~~a~~~~~~~v~~~~i~~~~~~~~~~~~~l~--~~dgivl~GG~~~~~~~~~~-~~i~~~~~~~~PvlGI 90 (235)
T cd01746 14 DAYLSVLEALKHAGIALGVKLEIKWIDSEDLEEENAEEALK--GADGILVPGGFGIRGVEGKI-LAIKYARENNIPFLGI 90 (235)
T ss_pred HHHHHHHHHHHHHHHHcCCeeEEEEeChhhcCccchhhhhc--cCCEEEECCCCCCcchhhHH-HHHHHHHHCCceEEEE
Confidence 444555566777777777777776543211 1 2232 67999999999877655432 2333 34578999999
Q ss_pred ehhHHHHHHHhCCeeeecCCcc--c--cCccceeE----------------------eccCCCCcccccCCC-ceeeeee
Q 027062 104 CMGLQCIGEAFGGKIVRSPLGV--M--HGKSSLVY----------------------YDEKGEDGLLAGLSN-PFTAGRY 156 (229)
Q Consensus 104 C~G~Qlla~alGg~v~~~~~~~--~--~g~~~~~~----------------------~~~~~~~~l~~~l~~-~~~~~~~ 156 (229)
|+|||+|+.++||++.+.+... + .+...++. +.....+.|.+-++. ...++++
T Consensus 91 ClG~Q~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~h~v~i~~~s~l~~~~g~~~~~~n~~ 170 (235)
T cd01746 91 CLGMQLAVIEFARNVLGLPDANSTEFDPDTPHPVVDLMPEQKGVKDLGGTMRLGAYPVILKPGTLAHKYYGKDEVEERHR 170 (235)
T ss_pred EhHHHHHHHHHHHHhcCCccCCccccCCCCCCCEEEECcccccccccCcccccCceEEEECCCChHHHHhCCCEEEEecC
Confidence 9999999999999987765321 0 11111111 000112233322332 4678999
Q ss_pred eceeeecc---CCCCCCeEEEEEcC-CCceEEEEeCCCCcEEEEeccCCCCCCC-chHHHHHHHH
Q 027062 157 HSLVIEKE---SFPSDALEVTAWTE-DGLIMAARHKKYKHLQGVQFHPESIITT-EGKTIVRNFI 216 (229)
Q Consensus 157 H~~~v~~~---~l~~~~~~~la~~~-~~~i~a~~~~~~~~i~g~QfHPE~~~~~-~~~~i~~~f~ 216 (229)
|+++|+++ .++.++++++|++. ++.|+|++.+++|+++|+|||||+...+ ...++|++|+
T Consensus 171 H~~~v~~~~~~~~~~~~l~v~a~~~ddg~ieaie~~~~pf~lgvQ~HPE~~~~~~~~~~lF~~fv 235 (235)
T cd01746 171 HRYEVNPEYVDELEEAGLRFSGTDPDGGLVEIVELPDHPFFVGTQFHPEFKSRPLKPHPLFVGFV 235 (235)
T ss_pred cccccCHHHHHHHhhCCeEEEEEeCCCCeEEEEEcCCCCcEEEEECCCCCcCCCCCccHHHHHhC
Confidence 99998653 22368899999998 8999999999998777999999997653 4578999885
No 61
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.95 E-value=1.9e-27 Score=198.11 Aligned_cols=188 Identities=19% Similarity=0.271 Sum_probs=131.0
Q ss_pred hHHHHHHHHHcCCEEEEEeCCccCHHHHhc--cCCCEEEECCCCCCCCCc--chHH----HHHHHh---CCCCcEEEEeh
Q 027062 37 TYNLCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQDS--GISL----QTVLEL---GPTVPLFGVCM 105 (229)
Q Consensus 37 ~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~--~~~dgiii~GG~~~~~~~--~~~~----~~i~~~---~~~~PvlGIC~ 105 (229)
..+++++++++|+.++++..+. +.+++++ ..+||||++||+.++... .... +.+.+. +..+|+||||+
T Consensus 22 ~~~Yv~~l~~aG~~vvpi~~~~-~~~~l~~~l~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~Pv~GiCl 100 (273)
T cd01747 22 AASYVKFLESAGARVVPIWINE-SEEYYDKLFKSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDAGDYFPVWGTCL 100 (273)
T ss_pred HHHHHHHHHHCCCeEEEEEeCC-cHHHHHHHHhhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhcCCCCcEEEEcH
Confidence 4579999999999998888662 2344433 167999999998776422 1212 222221 23499999999
Q ss_pred hHHHHHHHhCCeeeecCCccccCccceeEecc-CCCCcccccCCC--------ceeeeeeeceeeeccCCCC-----CCe
Q 027062 106 GLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDE-KGEDGLLAGLSN--------PFTAGRYHSLVIEKESFPS-----DAL 171 (229)
Q Consensus 106 G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~-~~~~~l~~~l~~--------~~~~~~~H~~~v~~~~l~~-----~~~ 171 (229)
|||+|+.++||++........++...++..+. ...+++|++++. ...++++|++.++++.++. ..+
T Consensus 101 G~QlL~~~~gg~~~~~~~~~~~~~~~~l~~t~~~~~s~lF~~~p~~l~~~l~~~~~~~~~Hs~~v~~~~~~~~~~l~~~~ 180 (273)
T cd01747 101 GFELLTYLTSGETLLLEATEATNSALPLNFTEDALQSRLFKRFPPDLLKSLATEPLTMNNHRYGISPENFTENGLLSDFF 180 (273)
T ss_pred HHHHHHHHhCCCccccCCCccccceEEEEEccccccChhhhcCCHHHHHHHhcccHHHhhcccccCHhhcccccccccce
Confidence 99999999999865422233466656666543 345778888864 3468899999997655432 456
Q ss_pred EEEEEcCC--C--ceEEEEeCCCCcEEEEeccCCCCCCCc---------------hHHHHHHHHHHHHHHhhhh
Q 027062 172 EVTAWTED--G--LIMAARHKKYKHLQGVQFHPESIITTE---------------GKTIVRNFIKMIVRKEAAD 226 (229)
Q Consensus 172 ~~la~~~~--~--~i~a~~~~~~~~i~g~QfHPE~~~~~~---------------~~~i~~~f~~~~~~~~~~~ 226 (229)
++++++++ + .+++++++++| +||+|||||+...+. +..+-.-|++.++++.+++
T Consensus 181 ~vla~~~d~~g~~fis~ie~~~~p-i~gvQFHPEks~few~~~~~~~hs~~ai~~~q~~a~ffv~e~r~n~~~f 253 (273)
T cd01747 181 NVLTTNDDWNGVEFISTVEAYKYP-IYGVQWHPEKNAFEWKKSSSIPHSEEAIRLTQYFANFFVNEARKSNNRF 253 (273)
T ss_pred EEEEEEecCCCceEEEEEEecCCc-eEEEecCCCcccccccccCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 88998755 4 47999999987 999999999875332 3445567777787776664
No 62
>PRK06186 hypothetical protein; Validated
Probab=99.95 E-value=1.3e-27 Score=192.02 Aligned_cols=192 Identities=18% Similarity=0.241 Sum_probs=124.8
Q ss_pred ceEEEEECCCchhH---HHHHHHH----HcCCEEEEEeCCc--cCH-HHHhccCCCEEEECCCCCCCCCcchHHHHHHHh
Q 027062 25 NPIIVIDNYDSFTY---NLCQYMG----ELGYHFEVYRNDE--LTV-EELKRKNPRGVLISPGPGAPQDSGISLQTVLEL 94 (229)
Q Consensus 25 ~~ilvid~~~~~~~---~~~~~l~----~~g~~~~v~~~~~--~~~-~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~ 94 (229)
.+|++|.-|..... ++.++|+ ..+.++.+.+.+. ... +.|+ ++|||+++||.+....+++....-+++
T Consensus 2 v~IalVGKY~~~~daY~Sv~eal~ha~~~~~~~~~i~wi~s~~l~~~~~l~--~~dgilvpgGfg~rg~~Gki~ai~~Ar 79 (229)
T PRK06186 2 LRIALVGDYNPDVTAHQAIPLALDLAAAVLGLPVDYEWLPTPEITDPEDLA--GFDGIWCVPGSPYRNDDGALTAIRFAR 79 (229)
T ss_pred cEEEEEECCcCCcHHHHHHHHHHHHHHHhcCCeeEEEEEchhhcCChhhHh--hCCeeEeCCCCCcccHhHHHHHHHHHH
Confidence 47888877754432 3344444 3466666655432 211 1233 679999999999888888876555667
Q ss_pred CCCCcEEEEehhHHHHHHHhCCeeeecC--CccccCc---c--------------ceeEeccCCCCcccccCC-Cceeee
Q 027062 95 GPTVPLFGVCMGLQCIGEAFGGKIVRSP--LGVMHGK---S--------------SLVYYDEKGEDGLLAGLS-NPFTAG 154 (229)
Q Consensus 95 ~~~~PvlGIC~G~Qlla~alGg~v~~~~--~~~~~g~---~--------------~~~~~~~~~~~~l~~~l~-~~~~~~ 154 (229)
++++|+||||+|||++...++..+...+ ...+... . +.+.+. .++.+.+-+. +.+...
T Consensus 80 e~~iP~LGIClGmQ~avIe~arnv~g~~dA~s~E~~~~~~~pvi~~~~~~~~~~~h~v~l~--~~S~l~~iyg~~~i~er 157 (229)
T PRK06186 80 ENGIPFLGTCGGFQHALLEYARNVLGWADAAHAETDPEGDRPVIAPLSCSLVEKTGDIRLR--PGSLIARAYGTLEIEEG 157 (229)
T ss_pred HcCCCeEeechhhHHHHHHHHhhhcCCcCCCcCCCCCCCCCCEEEECccccccCceEEEEC--CCCHHHHHhCCCeeeee
Confidence 7889999999999988777666553322 1111100 0 112221 1222222222 223334
Q ss_pred eeeceeeecc---CCCCCCeEEEEEcCCCceEEEEeCCCCcEEEEeccCCCCCCC-chHHHHHHHHHHHH
Q 027062 155 RYHSLVIEKE---SFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITT-EGKTIVRNFIKMIV 220 (229)
Q Consensus 155 ~~H~~~v~~~---~l~~~~~~~la~~~~~~i~a~~~~~~~~i~g~QfHPE~~~~~-~~~~i~~~f~~~~~ 220 (229)
+.|.+.|++. .+..+|+++.|+++|+.++|++..++|+++|+|||||+...+ ...++|+.|++++.
T Consensus 158 hrHryeVNs~h~q~i~~~GL~vsa~s~DG~iEaiE~~~hpf~lGVQwHPE~~s~~~~~~~LF~~Fv~aa~ 227 (229)
T PRK06186 158 YHCRYGVNPEFVAALESGDLRVTGWDEDGDVRAVELPGHPFFVATLFQPERAALAGRPPPLVRAFLRAAR 227 (229)
T ss_pred ccccEEECHHHHHHHhcCCeEEEEEcCCCCEEEEEeCCCCcEEEEeCCCCccCCCCCCCHHHHHHHHHHh
Confidence 4555666521 234689999999999999999999999999999999997643 45789999999875
No 63
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=99.95 E-value=1.5e-27 Score=192.91 Aligned_cols=158 Identities=28% Similarity=0.379 Sum_probs=104.8
Q ss_pred hHHHHHHHHHcCCEEEEEeCCccCHHHHhcc--CCCEEEECCCCCCCC---------C-cch-------H-HHHHH-HhC
Q 027062 37 TYNLCQYMGELGYHFEVYRNDELTVEELKRK--NPRGVLISPGPGAPQ---------D-SGI-------S-LQTVL-ELG 95 (229)
Q Consensus 37 ~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~--~~dgiii~GG~~~~~---------~-~~~-------~-~~~i~-~~~ 95 (229)
..+++++++++|..+.+++.. .+.++++.. .+|||||+||..++. . ... + +..++ +.+
T Consensus 26 ~~~Yv~~i~~aG~~pv~ip~~-~~~~~~~~~l~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l~~~a~~ 104 (217)
T PF07722_consen 26 AASYVKAIEAAGGRPVPIPYD-ADDEELDELLDRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELALIRNALG 104 (217)
T ss_dssp EHHHHHHHHHTT-EEEEE-SS---HHHHHHHHHCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHcCCEEEEEccC-CCHHHHHHHHhhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHHHHHHHh
Confidence 357899999999999999976 244444432 789999999985331 1 111 1 11222 357
Q ss_pred CCCcEEEEehhHHHHHHHhCCeeeecCCcc----c------cCccceeEeccCCCCccccc-CC-Cceeeeeeeceeeec
Q 027062 96 PTVPLFGVCMGLQCIGEAFGGKIVRSPLGV----M------HGKSSLVYYDEKGEDGLLAG-LS-NPFTAGRYHSLVIEK 163 (229)
Q Consensus 96 ~~~PvlGIC~G~Qlla~alGg~v~~~~~~~----~------~g~~~~~~~~~~~~~~l~~~-l~-~~~~~~~~H~~~v~~ 163 (229)
+++||||||+|||+|+.++||++...-... . ....+.+.+. ++.++.. +. ..+.++++|+++|.+
T Consensus 105 ~~~PilGICrG~Q~lnv~~GGtl~q~~~~~~~~~~~~~~~~~~~~h~v~i~---~~s~l~~~~~~~~~~vns~Hhq~v~~ 181 (217)
T PF07722_consen 105 RGKPILGICRGMQLLNVAFGGTLYQDIPDQPGFPDHRQHPQDFPSHPVRIV---PGSLLAKILGSEEIEVNSFHHQAVKP 181 (217)
T ss_dssp TT--EEEETHHHHHHHHHCCSSEESCCCCSS-EEECEE-S-TS--EEEEEE---TTSTCCCTSHHCTEEEEEEECEEECC
T ss_pred cCCCEEEEcHHHHHHHHHhCCCceeecccCcCcccccccccccccccceec---cCchHHHHhCcCcceeecchhhhhhc
Confidence 899999999999999999999998764220 0 1112223222 2333333 33 678999999999987
Q ss_pred cCCCCCCeEEEEEcCCCceEEEEeCCCC-cEEEEeccCC
Q 027062 164 ESFPSDALEVTAWTEDGLIMAARHKKYK-HLQGVQFHPE 201 (229)
Q Consensus 164 ~~l~~~~~~~la~~~~~~i~a~~~~~~~-~i~g~QfHPE 201 (229)
+.++++++|+++|+.++|++..+++ +++|+|||||
T Consensus 182 ---l~~~l~v~A~s~Dg~iEaie~~~~~~~~~GvQwHPE 217 (217)
T PF07722_consen 182 ---LGEGLRVTARSPDGVIEAIESPEHKYPILGVQWHPE 217 (217)
T ss_dssp ---HHCCEEEEEEECTSSEEEEEECCESS-EEEESS-CC
T ss_pred ---cCCCceEEEEecCCcEEEEEEcCCCCCEEEEEeCCC
Confidence 6799999999999999999999865 6999999999
No 64
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1.9e-26 Score=199.27 Aligned_cols=196 Identities=31% Similarity=0.549 Sum_probs=144.2
Q ss_pred ccCCCceEEEEECCCchhHHHHHHHHHc-CCEEEEEeCCccC----HHHHhcc-CCCEEEECCCCCCCCCcch--HHHHH
Q 027062 20 SKNNKNPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYRNDELT----VEELKRK-NPRGVLISPGPGAPQDSGI--SLQTV 91 (229)
Q Consensus 20 ~~~~~~~ilvid~~~~~~~~~~~~l~~~-g~~~~v~~~~~~~----~~~l~~~-~~dgiii~GG~~~~~~~~~--~~~~i 91 (229)
.+..+.++|+||+||+|+.++.++|... |...+++..++.. .+.+... -+|+||+.+|||+|.-... ....+
T Consensus 10 ~~~~rl~~LlID~YDSyTfNiy~ll~~~~~vp~V~~vh~~~~~~d~~~~l~q~~~FDaIVVgPGPG~P~~a~d~gI~~rl 89 (767)
T KOG1224|consen 10 KSLPRLRTLLIDNYDSYTFNIYQLLSTINGVPPVVIVHDEWTWEDAYHYLYQDVAFDAIVVGPGPGSPMCAADIGICLRL 89 (767)
T ss_pred hhhhheeEEEEecccchhhhHHHHHHHhcCCCcEEEEeccccCHHHHHHHhhccccceEEecCCCCCCCcHHHHHHHHHH
Confidence 3445688999999999999999999764 5555544433222 2233321 4899999999999942222 33444
Q ss_pred HHhCCCCcEEEEehhHHHHHHHhCCeeeecCCccccCccceeEeccC-CCCcccccCCCceeeeeeeceeeeccCCCCCC
Q 027062 92 LELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEK-GEDGLLAGLSNPFTAGRYHSLVIEKESFPSDA 170 (229)
Q Consensus 92 ~~~~~~~PvlGIC~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~-~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~ 170 (229)
+...+.+||||||+|||.|+.+-|+.|...+ .+.||....+..+.. .-+.++.+.+..|.+..+|+..+++ ++-+-
T Consensus 90 ~~~~~~iPilGICLGfQal~l~hGA~v~~~n-~p~HGrvs~i~~~~~~~f~gi~sg~~~~fK~~RYHSL~in~--~pid~ 166 (767)
T KOG1224|consen 90 LLECRDIPILGICLGFQALGLVHGAHVVHAN-EPVHGRVSGIEHDGNILFSGIPSGRNSDFKVVRYHSLIINS--LPIDL 166 (767)
T ss_pred HHhcCCCceeeeehhhHhHhhhcccceecCC-CcccceeeeEEecCcEEEccCCCCCcccceeEEeEEEEecC--Cchhh
Confidence 5556789999999999999999999999665 456998877766422 1234455555789999999999986 33344
Q ss_pred eEEEEEcCC--C-ceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHHH
Q 027062 171 LEVTAWTED--G-LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI 219 (229)
Q Consensus 171 ~~~la~~~~--~-~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~~ 219 (229)
+.+++++++ | ..+.+.+.+.| .||+|||||...+..|..+|+||++..
T Consensus 167 l~il~t~~ddng~ilMsi~~~~fP-hfG~qyHPES~~s~~g~~lfkNFl~lt 217 (767)
T KOG1224|consen 167 LPILWTIYDDNGHILMSIMHSSFP-HFGLQYHPESIASTYGSQLFKNFLDLT 217 (767)
T ss_pred hcceeEeecCCceEEEEeeccCCC-ccceeeChHHhhhhhhHHHHHHHHHhh
Confidence 555665533 3 57889999988 699999999999999999999999875
No 65
>PRK05380 pyrG CTP synthetase; Validated
Probab=99.94 E-value=4.8e-26 Score=201.35 Aligned_cols=197 Identities=16% Similarity=0.236 Sum_probs=125.2
Q ss_pred CCceEEEEECCCchh---HHHHHHHHHc----CCEEEEEeCCccCH------HHHhccCCCEEEECCCCCCCCCcchHHH
Q 027062 23 NKNPIIVIDNYDSFT---YNLCQYMGEL----GYHFEVYRNDELTV------EELKRKNPRGVLISPGPGAPQDSGISLQ 89 (229)
Q Consensus 23 ~~~~ilvid~~~~~~---~~~~~~l~~~----g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG~~~~~~~~~~~~ 89 (229)
...+|++|.-|.... .++.++|+.+ +.++.+.+.+.... +.++ ++||||++||++.....+.. .
T Consensus 287 ~~v~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~v~i~wIdse~l~~~~~~~~L~--~~DGIIlpGGfG~~~~~g~i-~ 363 (533)
T PRK05380 287 GEVTIALVGKYVELPDAYKSVIEALKHAGIANDVKVNIKWIDSEDLEEENVAELLK--GVDGILVPGGFGERGIEGKI-L 363 (533)
T ss_pred CceEEEEEeCccCCcHHHHHHHHHHHHHHHHcCCeeEEEEEChhhccCcchhhHhh--cCCEEEecCCCCccccccHH-H
Confidence 457899998775543 3455555544 55666665442211 2233 67999999999876655443 3
Q ss_pred HHH-HhCCCCcEEEEehhHHHHHHHhCCeeeecCCc--cccCc--------------------------cceeEeccCCC
Q 027062 90 TVL-ELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLG--VMHGK--------------------------SSLVYYDEKGE 140 (229)
Q Consensus 90 ~i~-~~~~~~PvlGIC~G~Qlla~alGg~v~~~~~~--~~~g~--------------------------~~~~~~~~~~~ 140 (229)
.++ .+++++|+||||+|||+|+.++||++...... .+... .+.+.+. .+
T Consensus 364 ~i~~a~e~~iPiLGIClGmQll~va~Ggnv~g~qda~s~E~~~~t~~pvI~~~~~q~~~~~~ggtmrlg~h~v~i~--~g 441 (533)
T PRK05380 364 AIRYARENNIPFLGICLGMQLAVIEFARNVLGLEDANSTEFDPDTPHPVIDLMPEQKDVSDLGGTMRLGAYPCKLK--PG 441 (533)
T ss_pred HHHHHHHCCCcEEEEchHHHHHHHHhcccccCcccCcccccCCCCCCCeEeeccccccccccCCcccccceeEEEC--CC
Confidence 333 34578999999999999999999998432110 11110 0111111 11
Q ss_pred CcccccCCC-ceeeeeeeceeeecc---CCCCCCeEEEEEcCCC-ceEEEEeCCCCcEEEEeccCCCCCCC-chHHHHHH
Q 027062 141 DGLLAGLSN-PFTAGRYHSLVIEKE---SFPSDALEVTAWTEDG-LIMAARHKKYKHLQGVQFHPESIITT-EGKTIVRN 214 (229)
Q Consensus 141 ~~l~~~l~~-~~~~~~~H~~~v~~~---~l~~~~~~~la~~~~~-~i~a~~~~~~~~i~g~QfHPE~~~~~-~~~~i~~~ 214 (229)
+.+.+-++. .+...+.|.+.|++. .+...|+++.|+++|+ .++|++..++|+++|+|||||+...+ ...++|.+
T Consensus 442 S~l~~iyg~~~i~ErhrHryeVNs~h~qal~~~GL~vsa~s~DgglVEaIEl~~hpfflGVQwHPE~~s~p~~~~pLF~~ 521 (533)
T PRK05380 442 TLAAEIYGKEEIYERHRHRYEVNNKYREQLEKAGLVFSGTSPDGRLVEIVELPDHPWFVGVQFHPEFKSRPRRPHPLFAG 521 (533)
T ss_pred ChHHHHhCCCceeeecccceecCHHHHHHHhhcCeEEEEEcCCCCcEEEEEeCCCCEEEEEeCCCCCCCCCCchHHHHHH
Confidence 222221221 222234455555432 1223589999999764 99999999999888999999998665 67899999
Q ss_pred HHHHHHHHhh
Q 027062 215 FIKMIVRKEA 224 (229)
Q Consensus 215 f~~~~~~~~~ 224 (229)
|++++.+++.
T Consensus 522 FV~Aa~~~~~ 531 (533)
T PRK05380 522 FVKAALENKK 531 (533)
T ss_pred HHHHHHHHhh
Confidence 9999986544
No 66
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=99.94 E-value=1.5e-25 Score=198.11 Aligned_cols=192 Identities=18% Similarity=0.255 Sum_probs=127.3
Q ss_pred CCceEEEEECCCchh---HHHHHHHHHcCC----EEEEEeCCccCHHHHhc------cCCCEEEECCCCCCCCCcchHHH
Q 027062 23 NKNPIIVIDNYDSFT---YNLCQYMGELGY----HFEVYRNDELTVEELKR------KNPRGVLISPGPGAPQDSGISLQ 89 (229)
Q Consensus 23 ~~~~ilvid~~~~~~---~~~~~~l~~~g~----~~~v~~~~~~~~~~l~~------~~~dgiii~GG~~~~~~~~~~~~ 89 (229)
...+|+++..|.... .++.++|+.+|+ ++.+.+.+ .+++.. .++|||+|+||++++...+.. .
T Consensus 288 ~~v~IalVGKY~~~~daY~SI~eAL~~ag~~~~~~V~~~~i~---se~i~~~~~~~L~~~dGIiLpGG~G~~~~~g~i-~ 363 (525)
T TIGR00337 288 HEVTIGIVGKYVELKDSYLSVIEALKHAGAKLDTKVNIKWID---SEDLEEEGAEFLKGVDGILVPGGFGERGVEGKI-L 363 (525)
T ss_pred CCcEEEEEeCCcCCHHHHHHHHHHHHhCccccCCEEEEEEec---HHHhhhhhhhhhcCCCEEEeCCCCCChhhcChH-H
Confidence 457899998875543 467888888776 44444432 222221 158999999999987766553 2
Q ss_pred HHH-HhCCCCcEEEEehhHHHHHHHhCCeeeecCCccc----cCccceeE--ecc--------------------CCCCc
Q 027062 90 TVL-ELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVM----HGKSSLVY--YDE--------------------KGEDG 142 (229)
Q Consensus 90 ~i~-~~~~~~PvlGIC~G~Qlla~alGg~v~~~~~~~~----~g~~~~~~--~~~--------------------~~~~~ 142 (229)
.++ .+++++|+||||+|||+|+.++|+++...+.+.. .+..+++. .+. ...+.
T Consensus 364 ai~~a~e~~iP~LGIClG~Qll~i~~grnv~gl~~A~s~Ef~~~~~~pVi~l~~~~~~~~~~GGTmRLG~h~v~i~~gS~ 443 (525)
T TIGR00337 364 AIKYARENNIPFLGICLGMQLAVIEFARNVLGLKGANSTEFDPETKYPVVDLLPEQKDISDLGGTMRLGLYPCILKPGTL 443 (525)
T ss_pred HHHHHHHcCCCEEEEcHHHHHHHHHHHHHhcCCCCCCccccCCCCCCCeeeccCcccccccCCceeeccceEEEECCCCh
Confidence 333 3456899999999999999999998887643210 01111211 000 00122
Q ss_pred ccccCCC-ceeeeeeeceeeecc---CCCCCCeEEEEEcCC-CceEEEEeCCCCcEEEEeccCCCCCCC-chHHHHHHHH
Q 027062 143 LLAGLSN-PFTAGRYHSLVIEKE---SFPSDALEVTAWTED-GLIMAARHKKYKHLQGVQFHPESIITT-EGKTIVRNFI 216 (229)
Q Consensus 143 l~~~l~~-~~~~~~~H~~~v~~~---~l~~~~~~~la~~~~-~~i~a~~~~~~~~i~g~QfHPE~~~~~-~~~~i~~~f~ 216 (229)
+.+-++. .+...+.|++.|++. .+..+|+++.|+++| +.+||++..++|+++|+|||||+...+ ...++|..|+
T Consensus 444 L~~iyG~~~i~erhrHry~VNs~h~q~l~~~GL~vsa~s~Dgg~VEaIE~~~hpfflGVQwHPE~~s~p~~~~~LF~~FV 523 (525)
T TIGR00337 444 AFKLYGKEEVYERHRHRYEVNNEYREQLENKGLIVSGTSPDGRLVEIIELPDHPFFVACQFHPEFTSRPNRPHPLFLGFV 523 (525)
T ss_pred HHHHhCCCceeecccceEEECHHHHHhhhhCCeEEEEEECCCCEEEEEEECCCCeEEEEecCCCCCCCCCchhHHHHHHH
Confidence 2222221 234556777777643 223479999999988 589999999999778999999998765 5689999998
Q ss_pred HH
Q 027062 217 KM 218 (229)
Q Consensus 217 ~~ 218 (229)
++
T Consensus 524 ~A 525 (525)
T TIGR00337 524 KA 525 (525)
T ss_pred hC
Confidence 63
No 67
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=99.93 E-value=1.4e-24 Score=194.94 Aligned_cols=184 Identities=20% Similarity=0.246 Sum_probs=130.3
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCc------chHHHHHHH-hC
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS------GISLQTVLE-LG 95 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~------~~~~~~i~~-~~ 95 (229)
...+|+|||++.++..++.++++.+|+++.+++. .+++. ++|+|||+||.. .... ..+.+.+++ +.
T Consensus 5 ~~~~i~iiDyG~GN~~sl~~al~~~G~~v~~v~~----~~~l~--~~D~lIlpG~gs-~~~~m~~L~~~gl~~~i~~~i~ 77 (538)
T PLN02617 5 ADSEVTLLDYGAGNVRSVRNAIRHLGFTIKDVQT----PEDIL--NADRLIFPGVGA-FGSAMDVLNNRGMAEALREYIQ 77 (538)
T ss_pred CCCeEEEEECCCCCHHHHHHHHHHCCCeEEEECC----hhhhc--cCCEEEECCCCC-HHHHHHHHHHcCHHHHHHHHHH
Confidence 4678999999999999999999999999987763 34554 679999987543 2211 113344443 45
Q ss_pred CCCcEEEEehhHHHHHHHh---------C---CeeeecCC----ccccCccceeEeccCCCCcccccCCCceeeeeeece
Q 027062 96 PTVPLFGVCMGLQCIGEAF---------G---GKIVRSPL----GVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSL 159 (229)
Q Consensus 96 ~~~PvlGIC~G~Qlla~al---------G---g~v~~~~~----~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~ 159 (229)
.++|+||||+|||+|+.++ | |++.+.+. ...+.+|..+... .+++||.+++ .+.++++|+|
T Consensus 78 ~g~PvLGIC~G~QlLa~~~~E~g~~~glg~l~G~v~~~~~~~~~~vp~iGw~~V~~~--~~spL~~~l~-~~~vy~vHSy 154 (538)
T PLN02617 78 NDRPFLGICLGLQLLFESSEENGPVEGLGVIPGVVGRFDSSNGLRVPHIGWNALQIT--KDSELLDGVG-GRHVYFVHSY 154 (538)
T ss_pred cCCCEEEECHHHHHHhhhhhhcCCccCcccccceEEECCccCCCCCCeecceEEEec--CCChhHhcCC-CcEEEEEeEE
Confidence 6899999999999999873 2 66665421 1122334555443 3678998885 4678999999
Q ss_pred eeeccCCCCCCeEEEEEcC--CCceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHHHHHH
Q 027062 160 VIEKESFPSDALEVTAWTE--DGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRK 222 (229)
Q Consensus 160 ~v~~~~l~~~~~~~la~~~--~~~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~~~~~ 222 (229)
.+.+ ++.....+.++.+ ++.++++++. ++||+|||||++. +.|..||++|++.+.+.
T Consensus 155 ~v~~--~p~~~~~v~a~~~~g~~~IaAI~~g---nI~GVQFHPE~s~-~~G~~L~~nFl~~~~~~ 213 (538)
T PLN02617 155 RATP--SDENKDWVLATCNYGGEFIASVRKG---NVHAVQFHPEKSG-ATGLSILRRFLEPKSSA 213 (538)
T ss_pred EEEe--cCCCCcEEEEEEccCCCcEEEEEeC---CEEEEEcCCccCc-hhHHHHHHHHHHhhhhh
Confidence 9764 2223334445543 4578999874 4999999999984 68999999999887753
No 68
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=99.93 E-value=5.8e-25 Score=179.02 Aligned_cols=187 Identities=17% Similarity=0.205 Sum_probs=125.5
Q ss_pred ceEEEEECCCch-hHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCC--------cchHHHHHHH-h
Q 027062 25 NPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD--------SGISLQTVLE-L 94 (229)
Q Consensus 25 ~~ilvid~~~~~-~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~--------~~~~~~~i~~-~ 94 (229)
|||+||++.+++ ...+.++++++|+++.+++..+. +++ ++|+|||+||...-.+ .....+.+++ .
T Consensus 1 ~~v~Vl~~~G~n~~~~~~~al~~~G~~~~~i~~~~~---~l~--~~d~lilpGG~~~~d~~~~~~~~~~~~~~~~l~~~~ 75 (227)
T TIGR01737 1 MKVAVIRFPGTNCDRDTVYALRLLGVDAEIVWYEDG---SLP--DYDGVVLPGGFSYGDYLRAGAIAAASPIMQEVREFA 75 (227)
T ss_pred CeEEEEeCCCcCcHHHHHHHHHHCCCeEEEEecCCC---CCC--CCCEEEECCCCcccccccccchhcchHHHHHHHHHH
Confidence 589999998775 46789999999999998876422 233 6799999999742111 1223444443 4
Q ss_pred CCCCcEEEEehhHHHHHHH--hCCeeeecCCccccCccceeEeccCCCCcccccCCCceeee--eeece---eeecc---
Q 027062 95 GPTVPLFGVCMGLQCIGEA--FGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAG--RYHSL---VIEKE--- 164 (229)
Q Consensus 95 ~~~~PvlGIC~G~Qlla~a--lGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~--~~H~~---~v~~~--- 164 (229)
+.++||+|||.|+|+|+.+ ++|++.++........|..+.+. ...++++++++....++ ..|.+ .++++
T Consensus 76 ~~g~pvlgIC~G~QlLa~~GlL~G~l~~n~~~~~~~~~~~~~v~-~~~~~~~~~~~~g~~~~~pi~H~eG~y~~~~~~l~ 154 (227)
T TIGR01737 76 EKGVPVLGICNGFQILVEAGLLPGALLPNDSLRFICRWVYLRVE-NADTIFTKNYKKGEVIRIPIAHGEGRYYADDETLA 154 (227)
T ss_pred HcCCEEEEECHHHHHHHHcCCCCCceeecCCCceEEEeEEEEEC-CCCChhhccCCCCCEEEEEeEcCCcCeEcCHHHHH
Confidence 5789999999999999996 99999888643323334444443 23567888887422222 24443 33322
Q ss_pred CCCCCCeEEEEE-----------cCC---CceEEEEeCCCCcEEEEeccCCCC-----CCCchHHHHHHHHHH
Q 027062 165 SFPSDALEVTAW-----------TED---GLIMAARHKKYKHLQGVQFHPESI-----ITTEGKTIVRNFIKM 218 (229)
Q Consensus 165 ~l~~~~~~~la~-----------~~~---~~i~a~~~~~~~~i~g~QfHPE~~-----~~~~~~~i~~~f~~~ 218 (229)
.|...+..++.+ +++ ..|+++++++++ ++|+|||||+. .+++|..||+||++.
T Consensus 155 ~l~~~~~i~~~y~d~~g~~~~~~npngs~~~i~~i~~~~~~-~~g~~~HpE~~~~~~~~~~~g~~~~~~~~~~ 226 (227)
T TIGR01737 155 RLESNDQVVFRYCDEDGDVAEEANPNGSVGNIAGIVNERGN-VLGMMPHPERASEKLLGGDDGLKLFESLVEW 226 (227)
T ss_pred HHHHCCcEEEEEECCCCCCCCCCCCCCCHHHHcccCCCCCC-EEEEecCchhhcccccCCcccHHHHHHHHhh
Confidence 122222222222 233 368899999987 99999999998 467999999999865
No 69
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.92 E-value=1.4e-24 Score=197.44 Aligned_cols=187 Identities=24% Similarity=0.415 Sum_probs=151.4
Q ss_pred cCCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHH-hCCCCc
Q 027062 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVP 99 (229)
Q Consensus 21 ~~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~P 99 (229)
..+..+|+++|+ +...+..|+|-..|+++.+++++ .+.+ ..+||||+|++||++|.-.+.....+++ ++.++|
T Consensus 169 ~Gk~~~I~aiDc--G~K~N~IRcL~~RGa~vtVvPw~-~~i~---~~~yDGlflSNGPGdPe~~~~~v~~vr~lL~~~~P 242 (1435)
T KOG0370|consen 169 DGKSLRILAIDC--GLKYNQIRCLVKRGAEVTVVPWD-YPIA---KEEYDGLFLSNGPGDPELCPLLVQNVRELLESNVP 242 (1435)
T ss_pred CCcccEEEEccc--CchHHHHHHHHHhCceEEEecCC-cccc---ccccceEEEeCCCCCchhhHHHHHHHHHHHhCCCC
Confidence 345678999998 67789999999999999999987 3333 3378999999999999888877666665 344599
Q ss_pred EEEEehhHHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccCCCCCCeEEEEEc-C
Q 027062 100 LFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT-E 178 (229)
Q Consensus 100 vlGIC~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~~~~la~~-~ 178 (229)
|+|||+|||+|+.|.|++..+.+++. +|.+.+...... ..-+...++|+++++.+.|+ .+++.+-.+ .
T Consensus 243 vfGIClGHQllA~AaGakT~KmKyGN-RGhNiP~~~~~t---------Grc~ITSQNHGYAVD~~tLp-~gWk~lFvN~N 311 (1435)
T KOG0370|consen 243 VFGICLGHQLLALAAGAKTYKMKYGN-RGHNIPCTCRAT---------GRCFITSQNHGYAVDPATLP-AGWKPLFVNAN 311 (1435)
T ss_pred eEEEehhhHHHHHhhCCceEEeeccc-cCCCccceeccC---------ceEEEEecCCceeecccccc-CCCchheeecc
Confidence 99999999999999999999999764 676655543322 13466778999999987775 788877766 5
Q ss_pred CCceEEEEeCCCCcEEEEeccCCCCCCC-chHHHHHHHHHHHHHHhhh
Q 027062 179 DGLIMAARHKKYKHLQGVQFHPESIITT-EGKTIVRNFIKMIVRKEAA 225 (229)
Q Consensus 179 ~~~i~a~~~~~~~~i~g~QfHPE~~~~~-~~~~i~~~f~~~~~~~~~~ 225 (229)
|+..+++.|..+| ++.+|||||...++ +...+|..|++...+.+..
T Consensus 312 DgSNEGI~Hss~P-~fSvQFHPEat~GP~DTeyLFDiFi~lvkk~kst 358 (1435)
T KOG0370|consen 312 DGSNEGIMHSSKP-FFSVQFHPEATPGPHDTEYLFDVFIELVKKSKST 358 (1435)
T ss_pred cCCCceEecCCCC-ceeeecCCcCCCCCcchHHHHHHHHHHHHHHhcC
Confidence 7789999999988 99999999999888 6788999999998866554
No 70
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.92 E-value=3.1e-24 Score=169.13 Aligned_cols=167 Identities=21% Similarity=0.238 Sum_probs=108.9
Q ss_pred EEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcch------HHHHHHHhCCCCcE
Q 027062 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI------SLQTVLELGPTVPL 100 (229)
Q Consensus 27 ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~------~~~~i~~~~~~~Pv 100 (229)
|.|||++.+...++.++|++.|+++.+++. .+++. ++|+||+||+. ++.+... +.+.+++ ..++|+
T Consensus 2 i~iidyg~gN~~s~~~al~~~g~~~~~v~~----~~~l~--~~D~lIlPG~g-~~~~~~~~L~~~gl~~~i~~-~~g~Pv 73 (192)
T PRK13142 2 IVIVDYGLGNISNVKRAIEHLGYEVVVSNT----SKIID--QAETIILPGVG-HFKDAMSEIKRLNLNAILAK-NTDKKM 73 (192)
T ss_pred EEEEEcCCccHHHHHHHHHHcCCCEEEEeC----HHHhc--cCCEEEECCCC-CHHHHHHHHHHCCcHHHHHH-hCCCeE
Confidence 899999888999999999999999998863 35665 57999887763 3222211 2344444 457999
Q ss_pred EEEehhHHHHHHHh--C---------CeeeecCCc--cccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccCCC
Q 027062 101 FGVCMGLQCIGEAF--G---------GKIVRSPLG--VMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFP 167 (229)
Q Consensus 101 lGIC~G~Qlla~al--G---------g~v~~~~~~--~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~ 167 (229)
||||+|||+|++.. | ++|.+.+.. ..+..|+.+.. +.++|+ ..+++.|++.+. .
T Consensus 74 lGIClGmQlL~~~~~eg~~~GLgll~~~V~rf~~~~~vph~GWn~~~~----~~~l~~-----~~~yFVhSy~v~----~ 140 (192)
T PRK13142 74 IGICLGMQLMYEHSDEGDASGLGFIPGNISRIQTEYPVPHLGWNNLVS----KHPMLN-----QDVYFVHSYQAP----M 140 (192)
T ss_pred EEECHHHHHHhhhcccCCcCccCceeEEEEECCCCCCCCcccccccCC----CCcccc-----cEEEEECCCeEC----C
Confidence 99999999999975 1 233333210 11222222210 233442 357899999983 2
Q ss_pred CCCeEEEEEcCCCceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHH
Q 027062 168 SDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 218 (229)
Q Consensus 168 ~~~~~~la~~~~~~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~ 218 (229)
.+....++.-....+.+++. + +++|+|||||++ ...|.+|++||++-
T Consensus 141 ~~~v~~~~~yg~~~~~~v~~-~--n~~g~QFHPEkS-~~~G~~ll~nf~~~ 187 (192)
T PRK13142 141 SENVIAYAQYGADIPAIVQF-N--NYIGIQFHPEKS-GTYGLQILRQAIQG 187 (192)
T ss_pred CCCEEEEEECCCeEEEEEEc-C--CEEEEecCcccC-cHhHHHHHHHHHhc
Confidence 23444444332224455543 3 499999999997 57899999999763
No 71
>PLN02327 CTP synthase
Probab=99.92 E-value=1.1e-24 Score=192.97 Aligned_cols=201 Identities=18% Similarity=0.211 Sum_probs=129.8
Q ss_pred CCceEEEEECCCchhH---HHHHHHH----HcCCEEEEEeCCc--cCH--------------HHHhccCCCEEEECCCCC
Q 027062 23 NKNPIIVIDNYDSFTY---NLCQYMG----ELGYHFEVYRNDE--LTV--------------EELKRKNPRGVLISPGPG 79 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~---~~~~~l~----~~g~~~~v~~~~~--~~~--------------~~l~~~~~dgiii~GG~~ 79 (229)
...+|++|.-|..... ++.++|+ ..+.++.+.+.+. ... +.+. ++|||+++||++
T Consensus 296 ~~v~IalVGKY~~l~DAY~Si~eAL~hA~~~~~~~v~i~wI~se~l~~~~~~~~~~~y~~~~~~L~--~~DGIvvpGGfG 373 (557)
T PLN02327 296 EPVRIAMVGKYTGLSDSYLSVLKALLHASVACSRKLVIDWVAASDLEDETAKETPDAYAAAWKLLK--GADGILVPGGFG 373 (557)
T ss_pred CceEEEEEecccCCcHhHHHHHHHHHHHHHHcCCeeEEEEEchhhcCCcccccccchhhhhHHhhc--cCCEEEeCCCCC
Confidence 3578999987744332 3344443 4566666654321 111 1122 689999999998
Q ss_pred CCCCcchHHHHHHHhCCCCcEEEEehhHHHHHHHhCCeeeecCCc--ccc---CccceeE-eccC----C----------
Q 027062 80 APQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLG--VMH---GKSSLVY-YDEK----G---------- 139 (229)
Q Consensus 80 ~~~~~~~~~~~i~~~~~~~PvlGIC~G~Qlla~alGg~v~~~~~~--~~~---g~~~~~~-~~~~----~---------- 139 (229)
+....+.....-...++++|+||||+|||+++.+++.+|...+.. .+. .....+. ..+. .
T Consensus 374 ~~~~~G~i~ai~~are~~iP~LGIClGmQl~viefaRnvlG~~dAnS~Efdp~t~~pvI~~m~e~~~~~~GGtMRLG~~~ 453 (557)
T PLN02327 374 DRGVEGKILAAKYARENKVPYLGICLGMQIAVIEFARSVLGLKDANSTEFDPETPNPCVIFMPEGSKTHMGGTMRLGSRR 453 (557)
T ss_pred CcccccHHHHHHHHHHcCCCEEEEcHHHHHHHHHHHHhhcCCcCCCccccCCCCCCCEEEEehhcccccCCceEECCCcc
Confidence 877766643333345678999999999999999999887665311 111 1111111 0000 0
Q ss_pred -----CCccccc-CCC--ceeeeeeeceeeeccC---CCCCCeEEEEEcCCC-ceEEEEeCCCCcEEEEeccCCCCCCC-
Q 027062 140 -----EDGLLAG-LSN--PFTAGRYHSLVIEKES---FPSDALEVTAWTEDG-LIMAARHKKYKHLQGVQFHPESIITT- 206 (229)
Q Consensus 140 -----~~~l~~~-l~~--~~~~~~~H~~~v~~~~---l~~~~~~~la~~~~~-~i~a~~~~~~~~i~g~QfHPE~~~~~- 206 (229)
++.++.. +.. .+...+.|+|+|+++. +...++++.|+++++ .++++++.++|+++|+|||||+...+
T Consensus 454 ~~~~~~~S~l~~iYg~~~~VnerHrHRYeVN~q~v~~le~~gL~vsa~s~dg~~IEaiE~~~~pffvGVQfHPE~~s~p~ 533 (557)
T PLN02327 454 TYFQTPDCKSAKLYGNVSFVDERHRHRYEVNPEMVPRLEKAGLSFVGKDETGRRMEIVELPSHPFFVGVQFHPEFKSRPG 533 (557)
T ss_pred cccCCCCCHHHHHhCCccceeeeeccccccCHHHHHHHhhcCcEEEEEcCCCCEEEEEEeCCCCEEEEEEcCCCCCCCCC
Confidence 1111111 111 2446677788887652 335889999999887 79999999998777999999998654
Q ss_pred chHHHHHHHHHHHHHHhhh
Q 027062 207 EGKTIVRNFIKMIVRKEAA 225 (229)
Q Consensus 207 ~~~~i~~~f~~~~~~~~~~ 225 (229)
...++|..|++++.++..+
T Consensus 534 ~~~pLF~~Fv~Aa~~~~~~ 552 (557)
T PLN02327 534 KPSPLFLGLIAAASGQLDA 552 (557)
T ss_pred CchHHHHHHHHHHHHhHHh
Confidence 4689999999999875554
No 72
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=99.92 E-value=1.1e-24 Score=171.86 Aligned_cols=163 Identities=24% Similarity=0.383 Sum_probs=115.8
Q ss_pred EEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCc----chHHHHHHH-hCCCCcEE
Q 027062 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS----GISLQTVLE-LGPTVPLF 101 (229)
Q Consensus 27 ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~----~~~~~~i~~-~~~~~Pvl 101 (229)
|++++. .+...+ ++|++.|+++.+++.. ++++ ++|+||++||+.+..+. ..+.+.+++ .+.++|+|
T Consensus 3 vl~~qg--~~~e~~-~~l~~~g~~v~~v~~~----~~l~--~~dgiii~Gg~~~~~~~~~~~~~~~~~i~~~~~~g~Pvl 73 (183)
T cd01749 3 VLALQG--DFREHI-RALERLGVEVIEVRTP----EDLE--GIDGLIIPGGESTTIGKLLRRTGLLDPLREFIRAGKPVF 73 (183)
T ss_pred EEEecC--CcHHHH-HHHHHCCCeEEEECCH----HHhc--cCCEEEECCchHHHHHHHHHhCCHHHHHHHHHHcCCeEE
Confidence 566664 444444 8999999999988753 3454 67999999998755432 123344554 45689999
Q ss_pred EEehhHHHHHHHhCC------------eeeecCCccccCccceeEeccCCCCcccccC-CCceeeeeeeceeeeccCCCC
Q 027062 102 GVCMGLQCIGEAFGG------------KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGL-SNPFTAGRYHSLVIEKESFPS 168 (229)
Q Consensus 102 GIC~G~Qlla~alGg------------~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l-~~~~~~~~~H~~~v~~~~l~~ 168 (229)
|||+|+|+|+.++++ ++.++++++..+... . ...+.+. ++.+.++++|.+.|.. +|
T Consensus 74 GiC~G~qlL~~~~~~~~~~~glG~~~~~v~~~~~g~~~g~~~-~-------~l~~~~~~~~~~~~~~~h~~~v~~---~p 142 (183)
T cd01749 74 GTCAGLILLAKEVEDQGGQPLLGLLDITVRRNAFGRQVDSFE-A-------DLDIPGLGLGPFPAVFIRAPVIEE---VG 142 (183)
T ss_pred EECHHHHHHHHHhcccCCCCccCceeEEEEeeccccccceEE-E-------cCCCCcCCCCccEEEEEECcEEEE---cC
Confidence 999999999999998 677766555444321 1 1123333 3678999999999976 67
Q ss_pred CCeEEEEEcCCCceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHH
Q 027062 169 DALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI 216 (229)
Q Consensus 169 ~~~~~la~~~~~~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~ 216 (229)
++++++|+++.+. +|++.+ ++||+|||||.+. ..++++.|+
T Consensus 143 ~~~~~la~~~~~~-~a~~~~---~~~g~qfHPE~~~---~~~~~~~f~ 183 (183)
T cd01749 143 PGVEVLAEYDGKI-VAVRQG---NVLATSFHPELTD---DTRIHEYFL 183 (183)
T ss_pred CCcEEEEecCCEE-EEEEEC---CEEEEEcCCccCC---CcchhhhhC
Confidence 8999999997655 488754 3999999999963 346777764
No 73
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=99.92 E-value=4.1e-24 Score=168.48 Aligned_cols=167 Identities=19% Similarity=0.270 Sum_probs=114.7
Q ss_pred eEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCC----cchHHHHHHH-hCCCCcE
Q 027062 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD----SGISLQTVLE-LGPTVPL 100 (229)
Q Consensus 26 ~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~----~~~~~~~i~~-~~~~~Pv 100 (229)
||.|+...+.+.. ..++|+++|+++.+++. .++++ ++|+|||+||+++..+ ...+...+++ .+.++|+
T Consensus 1 ~igvl~~qg~~~e-~~~~l~~~g~~~~~v~~----~~~l~--~~d~liipGG~~~~~~~l~~~~~l~~~i~~~~~~g~pi 73 (184)
T TIGR03800 1 KIGVLALQGAVRE-HARALEALGVEGVEVKR----PEQLD--EIDGLIIPGGESTTLSRLLDKYGMFEPLRNFILSGLPV 73 (184)
T ss_pred CEEEEEccCCHHH-HHHHHHHCCCEEEEECC----hHHhc--cCCEEEECCCCHHHHHHHHHhccHHHHHHHHHHcCCcE
Confidence 3556655445554 55899999999988864 34555 6799999999776522 2234455554 4578999
Q ss_pred EEEehhHHHHHHHhC-----------CeeeecCCccccCccceeEeccCCCCcccccCC-CceeeeeeeceeeeccCCCC
Q 027062 101 FGVCMGLQCIGEAFG-----------GKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLS-NPFTAGRYHSLVIEKESFPS 168 (229)
Q Consensus 101 lGIC~G~Qlla~alG-----------g~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~-~~~~~~~~H~~~v~~~~l~~ 168 (229)
||||+|+|+|+.++. +++.++.+++..+..... ++. +++. ..+...+.|.+.|.. +|
T Consensus 74 lGIC~G~qlL~~~~~~~~~~~lg~~~~~v~~~~~g~~~~s~~~~-l~~-------~~~~~~~~~~~~~h~~~v~~---lp 142 (184)
T TIGR03800 74 FGTCAGLIMLAKEIIGQKEGYLGLLDMTVERNAYGRQVDSFEAE-VDI-------KGVGDDPITGVFIRAPKIVS---VG 142 (184)
T ss_pred EEECHHHHHHHhhhccCCCCccCcEEEEEEeeccCCccccEEEE-eec-------ccCCCCcceEEEEcCCCccc---CC
Confidence 999999999999972 567776655544433211 111 1111 135566899999986 67
Q ss_pred CCeEEEEEcCCCceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHH
Q 027062 169 DALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 217 (229)
Q Consensus 169 ~~~~~la~~~~~~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~ 217 (229)
++++++|+++++ +.|++.+ ++||+|||||++ ...++++.|++
T Consensus 143 ~~~~vla~~~~~-~~a~~~~---~~~gvQfHPE~~---~~~~~~~~f~~ 184 (184)
T TIGR03800 143 NGVEILAKVGNR-IVAVRQG---NILVSSFHPELT---DDHRVHEYFLE 184 (184)
T ss_pred CCeEEEEEeCCe-eEEEEeC---CEEEEEeCCccC---CCchHHHHhhC
Confidence 999999998765 4677644 399999999996 23488888873
No 74
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=99.91 E-value=1e-23 Score=181.91 Aligned_cols=199 Identities=18% Similarity=0.252 Sum_probs=135.4
Q ss_pred ceEEEEECCCchhH---HHHHHHHHc----CCEEEEEeCCcc--CH---HHHhccCCCEEEECCCCCCCCCcchHHHHHH
Q 027062 25 NPIIVIDNYDSFTY---NLCQYMGEL----GYHFEVYRNDEL--TV---EELKRKNPRGVLISPGPGAPQDSGISLQTVL 92 (229)
Q Consensus 25 ~~ilvid~~~~~~~---~~~~~l~~~----g~~~~v~~~~~~--~~---~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~ 92 (229)
.+|+++.-|..... ++.++|+.+ +.++.+.+.+.. .. +++.. .+|||+++||.+....+++....-+
T Consensus 289 v~IalVGKYv~l~DaY~Sv~EAL~hag~~~~~~v~i~wIdse~le~~~~~~~~~-~~dgIlVPGGFG~RG~eGkI~Ai~y 367 (533)
T COG0504 289 VTIALVGKYVELPDAYKSVIEALKHAGIALGVKVNIKWIDSEDLEEENAAELEK-LVDGILVPGGFGYRGVEGKIAAIRY 367 (533)
T ss_pred eEEEEEECCcCchhHHHHHHHHHHhhhhhcCCceeeEEEccccccccchhhhhh-cCCEEEeCCCCCcCchHHHHHHHHH
Confidence 67999988766543 345555544 455555543322 11 22332 2799999999998888888877777
Q ss_pred HhCCCCcEEEEehhHHHHHHHhCCeeeecCCc--cc---cCccceeEe-cc-------------------CCCCcccccC
Q 027062 93 ELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLG--VM---HGKSSLVYY-DE-------------------KGEDGLLAGL 147 (229)
Q Consensus 93 ~~~~~~PvlGIC~G~Qlla~alGg~v~~~~~~--~~---~g~~~~~~~-~~-------------------~~~~~l~~~l 147 (229)
+.++++|+||||+|||++...+.-+|...+.. .+ ......+.. ++ -.+..+...+
T Consensus 368 AREn~iP~lGIClGmQ~aviE~ARnv~Gl~~AnS~Efdp~t~~pVv~l~~eq~~~~~lGGTmRLG~y~~~l~~gT~a~~l 447 (533)
T COG0504 368 ARENNIPFLGICLGMQLAVIEFARNVLGLEGANSTEFDPDTKYPVVDLMPEQKDVVDLGGTMRLGAYPCRLKPGTLAAKL 447 (533)
T ss_pred HHhcCCCEEEEchhHHHHHHHHHHHhcCCccCcccccCCCCCCceEEeccccccCCcCCceeeccceeeecCCCcHHHHH
Confidence 88889999999999999998765544433210 00 000101100 00 0112222222
Q ss_pred C--Cceeeeeeeceeeecc---CCCCCCeEEEEEcCCC-ceEEEEeCCCCcEEEEeccCCCCCCC-chHHHHHHHHHHHH
Q 027062 148 S--NPFTAGRYHSLVIEKE---SFPSDALEVTAWTEDG-LIMAARHKKYKHLQGVQFHPESIITT-EGKTIVRNFIKMIV 220 (229)
Q Consensus 148 ~--~~~~~~~~H~~~v~~~---~l~~~~~~~la~~~~~-~i~a~~~~~~~~i~g~QfHPE~~~~~-~~~~i~~~f~~~~~ 220 (229)
. +.+.-.+.|+|+++++ .+...|+++.++++++ .+++++..++|+++|+|||||++..+ ...++|..|++++.
T Consensus 448 Y~~~~v~ERHRHRYEvN~~y~~~le~~Gl~~sg~s~d~~lvEivE~~~hpfFv~~QfHPEf~SrP~~phPlf~~fv~Aa~ 527 (533)
T COG0504 448 YGKDEIYERHRHRYEVNNDYRDQLEKAGLVFSGTSPDGGLVEIVELPDHPFFVATQFHPEFKSRPLRPHPLFVGFVKAAL 527 (533)
T ss_pred hCCCeeeeeccchhhcCHHHHHHHHhCCeEEEEEcCCCCeEEEEEcCCCceEEEEcccccccCCCCCCCccHHHHHHHHH
Confidence 2 3455668889999765 3456899999999875 79999999999999999999999877 68999999999998
Q ss_pred HHhh
Q 027062 221 RKEA 224 (229)
Q Consensus 221 ~~~~ 224 (229)
+++.
T Consensus 528 ~~~~ 531 (533)
T COG0504 528 EYKK 531 (533)
T ss_pred Hhhc
Confidence 7654
No 75
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=99.90 E-value=2.7e-22 Score=167.81 Aligned_cols=191 Identities=17% Similarity=0.195 Sum_probs=132.8
Q ss_pred CceEEEEECCCc---hhHHHHHHHHHcCCEEE--EEeCCc---------------cCHHHHhccCCCEEEECCCCCC--C
Q 027062 24 KNPIIVIDNYDS---FTYNLCQYMGELGYHFE--VYRNDE---------------LTVEELKRKNPRGVLISPGPGA--P 81 (229)
Q Consensus 24 ~~~ilvid~~~~---~~~~~~~~l~~~g~~~~--v~~~~~---------------~~~~~l~~~~~dgiii~GG~~~--~ 81 (229)
..+|+||+.=.. ....+.+.|.....++. .+.... .+.++++..+|||+||||+|.. +
T Consensus 35 pl~i~ilNlMp~k~~TE~q~~rll~~~~~qv~v~~~~~~~h~~~~~~~~hl~~~y~~~~~i~~~~~DG~IITGAp~e~~~ 114 (302)
T PRK05368 35 PLKILILNLMPKKIETETQFLRLLGNTPLQVDIHLLRIDSHESKNTPAEHLENFYCTFEDIKDEKFDGLIITGAPVEQLP 114 (302)
T ss_pred CccEEEEeCCCCCchHHHHHHHHhcCCCceEEEEEEecCCcCCCCCCHHHHHHhccCHHHhccCCCCEEEEcCCCCCCcc
Confidence 478999987333 22457777765555544 333221 1344565568999999999987 5
Q ss_pred CCcch-H--HHHHHH--hCCCCcEEEEehhHHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCceeeeee
Q 027062 82 QDSGI-S--LQTVLE--LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRY 156 (229)
Q Consensus 82 ~~~~~-~--~~~i~~--~~~~~PvlGIC~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 156 (229)
+++.. | +..+.+ ..+.+|+||||+|+|+++.++||...........|.... ... ...++|++++++.|.+.++
T Consensus 115 fedv~YW~El~~i~~w~~~~~~s~LgICwGaQa~a~algGi~k~~~~~K~~Gv~~~-~~~-~~~~pL~~g~~d~F~~phS 192 (302)
T PRK05368 115 FEDVDYWDELKEILDWAKTHVTSTLFICWAAQAALYHLYGIPKYTLPEKLSGVFEH-RVL-DPHHPLLRGFDDSFLVPHS 192 (302)
T ss_pred CCCCchHHHHHHHHHHHHHcCCCEEEEcHHHHHHHHHcCCCccCCCCCceeEEEEE-EEc-CCCChhhcCCCCcccccee
Confidence 55544 4 233322 235799999999999999999996222221234553322 222 2367999999999999999
Q ss_pred eceeeeccCC-CCCCeEEEEEcCCCceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHHHHH
Q 027062 157 HSLVIEKESF-PSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVR 221 (229)
Q Consensus 157 H~~~v~~~~l-~~~~~~~la~~~~~~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~~~~ 221 (229)
|.+.|.++.+ .+++++++|.|+.+.++++..++.+ ++++|+|||+. ...+.+.+.+.+.+
T Consensus 193 r~~~V~~~~i~~~~~l~vLA~S~~~gv~~~~~~~~r-~~~vQgHPEYd----~~tL~~EY~RD~~~ 253 (302)
T PRK05368 193 RYTEVREEDIRAATGLEILAESEEAGVYLFASKDKR-EVFVTGHPEYD----ADTLAQEYFRDLGA 253 (302)
T ss_pred ehhhccHHHhccCCCCEEEecCCCCCeEEEEeCCCC-EEEEECCCCCC----HHHHHHHHHHHHhC
Confidence 9988864433 4689999999999999999986654 99999999995 55677777777653
No 76
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.89 E-value=5.5e-22 Score=160.62 Aligned_cols=186 Identities=19% Similarity=0.267 Sum_probs=129.2
Q ss_pred ceEEEEECCCchh-HHHHHHHH-HcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCC--------CcchHHHHHHH-
Q 027062 25 NPIIVIDNYDSFT-YNLCQYMG-ELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ--------DSGISLQTVLE- 93 (229)
Q Consensus 25 ~~ilvid~~~~~~-~~~~~~l~-~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~--------~~~~~~~~i~~- 93 (229)
|||+||.+.+++. ..+.++++ .+|+++..+...+ .+++ ++|+|||+||+..-. ....+.+++++
T Consensus 1 ~~v~Vl~~~G~n~~~d~~~a~~~~~G~~~~~v~~~~---~~l~--~~D~lvipGG~~~~d~l~~~~~~~~~~~~~~l~~~ 75 (219)
T PRK03619 1 MKVAVIVFPGSNCDRDMARALRDLLGAEPEYVWHKE---TDLD--GVDAVVLPGGFSYGDYLRCGAIAAFSPIMKAVKEF 75 (219)
T ss_pred CEEEEEecCCcChHHHHHHHHHhcCCCeEEEEecCc---CCCC--CCCEEEECCCCchhhhhccchhhhchHHHHHHHHH
Confidence 5899999988874 66889998 8999988776542 2343 679999999964211 11223444543
Q ss_pred hCCCCcEEEEehhHHHHHHH--hCCeeeecCCccccCccceeEeccCCCCcccccCCC--ceeeeeee---ceeeecc--
Q 027062 94 LGPTVPLFGVCMGLQCIGEA--FGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSN--PFTAGRYH---SLVIEKE-- 164 (229)
Q Consensus 94 ~~~~~PvlGIC~G~Qlla~a--lGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~--~~~~~~~H---~~~v~~~-- 164 (229)
..+++|++|||.|+|+|+.+ ++|++.++..+.....|..+.+.. ..+++++.+.+ .+.+...| .+.++.+
T Consensus 76 ~~~g~~ilgIC~G~qlLa~~GLL~g~l~~n~~~~~~~~~v~v~i~~-~~~~~~~~~~~g~~~~~~~aH~~~r~~~~~~~~ 154 (219)
T PRK03619 76 AEKGKPVLGICNGFQILTEAGLLPGALTRNASLKFICRDVHLRVEN-NDTPFTSGYEKGEVIRIPIAHGEGNYYADEETL 154 (219)
T ss_pred HHCCCEEEEECHHHHHHHHcCCCCCeEEEcCCCcEEEEEEEEEECC-CCChhhcCCCCCCEEEEEEEcCcccEEECHHHH
Confidence 45789999999999999997 999999887655445555555543 36788887742 23343344 4444322
Q ss_pred -CCCCCCeEEEEEc---CCC---ceEEEEeCCCCcEEEEeccCCCCCC-----CchHHHHHHHHH
Q 027062 165 -SFPSDALEVTAWT---EDG---LIMAARHKKYKHLQGVQFHPESIIT-----TEGKTIVRNFIK 217 (229)
Q Consensus 165 -~l~~~~~~~la~~---~~~---~i~a~~~~~~~~i~g~QfHPE~~~~-----~~~~~i~~~f~~ 217 (229)
.+...++.++.++ +++ .|+++...++ +++|+|||||+... .+|.+||++|++
T Consensus 155 ~~l~~~~~~~~~~~~~npngs~~~ia~i~~~~~-~~~g~~~HPE~~~~~~~~~~~g~~lf~~~v~ 218 (219)
T PRK03619 155 KRLEGNGQVVFRYCDENPNGSVNDIAGIVNEKG-NVLGMMPHPERAVEPLLGSTDGLKLFESLLK 218 (219)
T ss_pred HHHHhCCcEEEEEcCCCCCCCHHHhcccCCCCC-CEEEEeCCCCccccCccCCCcCHHHHHHHhh
Confidence 2345667666655 555 4777776554 59999999999854 489999999985
No 77
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=99.84 E-value=1.3e-19 Score=147.68 Aligned_cols=84 Identities=23% Similarity=0.316 Sum_probs=61.7
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCC----cchHHHHHHH-hCCCC
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD----SGISLQTVLE-LGPTV 98 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~----~~~~~~~i~~-~~~~~ 98 (229)
+|+|.||...+.+... .++|+++|+++.+++. .+++. ++|+|||+||...... ...+.+.+++ ...++
T Consensus 1 ~m~igVLa~qG~~~e~-~~aL~~lG~ev~~v~~----~~~L~--~~DgLILPGGfs~~~~~L~~~~gl~~~I~~~v~~g~ 73 (248)
T PLN02832 1 MMAIGVLALQGSFNEH-IAALRRLGVEAVEVRK----PEQLE--GVSGLIIPGGESTTMAKLAERHNLFPALREFVKSGK 73 (248)
T ss_pred CcEEEEEeCCCchHHH-HHHHHHCCCcEEEeCC----HHHhc--cCCEEEeCCCHHHHHHHHHhhcchHHHHHHHHHcCC
Confidence 4689999998777765 4889999999988764 35665 5699999998653221 1113344444 34689
Q ss_pred cEEEEehhHHHHHHHh
Q 027062 99 PLFGVCMGLQCIGEAF 114 (229)
Q Consensus 99 PvlGIC~G~Qlla~al 114 (229)
|+||||.|||+|+...
T Consensus 74 PvLGiC~GmqlLa~~~ 89 (248)
T PLN02832 74 PVWGTCAGLIFLAERA 89 (248)
T ss_pred CEEEEChhHHHHHHHh
Confidence 9999999999999874
No 78
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.82 E-value=4.8e-19 Score=139.99 Aligned_cols=190 Identities=17% Similarity=0.277 Sum_probs=132.4
Q ss_pred CceEEEEECCCchh-HHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCC--CCCCcch------HHHHHHH-
Q 027062 24 KNPIIVIDNYDSFT-YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG--APQDSGI------SLQTVLE- 93 (229)
Q Consensus 24 ~~~ilvid~~~~~~-~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~--~~~~~~~------~~~~i~~- 93 (229)
+|||+||.+.++.. .....+++.+|.+++.++..+..... ++|+|+++||.+ +.-..+. ..+.+++
T Consensus 2 ~~kvaVi~fpGtN~d~d~~~A~~~aG~~~~~V~~~d~~~~~----~~d~vv~pGGFSyGDyLr~Gaiaa~~~v~~~v~~~ 77 (231)
T COG0047 2 RPKVAVLRFPGTNCDYDMAAAFERAGFEAEDVWHSDLLLGR----DFDGVVLPGGFSYGDYLRAGAIAAIAPVMDEVREF 77 (231)
T ss_pred CceEEEEEcCCcCchHHHHHHHHHcCCCceEEEeeecccCC----CccEEEEcCCCCcccccCcchHHhhHHHHHHHHHH
Confidence 68999999977754 56888999999999988875332211 689999999964 2222222 2344444
Q ss_pred hCCCCcEEEEehhHHHHHHH--hCCeeeecCCccccCccceeEeccCCCCcccccCCC--ceeeeeeecee---eecc--
Q 027062 94 LGPTVPLFGVCMGLQCIGEA--FGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSN--PFTAGRYHSLV---IEKE-- 164 (229)
Q Consensus 94 ~~~~~PvlGIC~G~Qlla~a--lGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~--~~~~~~~H~~~---v~~~-- 164 (229)
.++++|+||||.|+|+|.++ +.|.+.++....+...+..+.+.. .+++++..+.+ .+.+.-.|... ++.+
T Consensus 78 a~~g~~vLGICNGfQiL~e~gLlPGal~~N~s~~F~cr~v~l~V~~-~~t~ft~~~~~g~~i~ipVAHgEGr~~~~~~~l 156 (231)
T COG0047 78 AEKGKPVLGICNGFQILSEAGLLPGALTRNESLRFECRWVYLRVEN-NNTPFTSGYEGGEVIPIPVAHGEGRYYADDETL 156 (231)
T ss_pred HHCCCeEEEEcchhHHHHHcCcCCcceecCCCCceEEEEEEEEEec-CCCHHHHhcCCCceEEEEEeecceeEEccHHHH
Confidence 35889999999999999975 889999988777788877777654 35666666643 45566667533 2221
Q ss_pred -CCCCCCeEEEEEc-----------CCC---ceEEEEeCCCCcEEEEeccCCCCC-----CCchHHHHHHHHHHH
Q 027062 165 -SFPSDALEVTAWT-----------EDG---LIMAARHKKYKHLQGVQFHPESII-----TTEGKTIVRNFIKMI 219 (229)
Q Consensus 165 -~l~~~~~~~la~~-----------~~~---~i~a~~~~~~~~i~g~QfHPE~~~-----~~~~~~i~~~f~~~~ 219 (229)
.+..++..++-+. +++ .|+++.+.+++ ++|.+.||||.. +.+|.++|++.++.+
T Consensus 157 ~~l~~ngqvvfrY~d~~G~~~~~~NPNGS~~~IaGI~n~~G~-V~gmMPHPERa~~~~~g~~Dg~~lF~s~~~~~ 230 (231)
T COG0047 157 AELEENGQVVFRYVDNNGETEEYANPNGSVNGIAGITNEDGN-VLGMMPHPERASESLLGGEDGLRLFRSARKYL 230 (231)
T ss_pred HHHhhCCeEEEEEecCCCceeeeeCCCCChhhceeEEcCCCC-EEEecCCchhhhhcccCCchHHHHHHHHHHhh
Confidence 1222333333332 334 48999999986 999999999974 347899999887654
No 79
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.80 E-value=2.5e-18 Score=142.08 Aligned_cols=194 Identities=17% Similarity=0.237 Sum_probs=127.6
Q ss_pred CCceEEEEECCCch-hHHHHHHHHHcCCEEEEEeCCccCH--HHHhccCCCEEEECCCCCCC--CCcc-----hH----H
Q 027062 23 NKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTV--EELKRKNPRGVLISPGPGAP--QDSG-----IS----L 88 (229)
Q Consensus 23 ~~~~ilvid~~~~~-~~~~~~~l~~~g~~~~v~~~~~~~~--~~l~~~~~dgiii~GG~~~~--~~~~-----~~----~ 88 (229)
.++||+||.+.+.. .....++++++|+++.+++..+... .+++ ++|+|+|+||.+.. ...+ .. .
T Consensus 2 ~~~kvaVl~~pG~n~d~e~~~Al~~aG~~v~~v~~~~~~~~~~~l~--~~DgLvipGGfs~gD~l~~g~~~~~~l~~~l~ 79 (261)
T PRK01175 2 ESIRVAVLRMEGTNCEDETVKAFRRLGVEPEYVHINDLAAERKSVS--DYDCLVIPGGFSAGDYIRAGAIFAARLKAVLR 79 (261)
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHCCCcEEEEeeccccccccchh--hCCEEEECCCCCcccccccchhhHHHHHHHHH
Confidence 35789999986664 5678899999999998887542111 1233 68999999995321 1111 11 1
Q ss_pred HHHHH-hCCCCcEEEEehhHHHHHHH--hCC----------eeeecCCccccCccceeEeccCCCCcccccCCCc-eeee
Q 027062 89 QTVLE-LGPTVPLFGVCMGLQCIGEA--FGG----------KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNP-FTAG 154 (229)
Q Consensus 89 ~~i~~-~~~~~PvlGIC~G~Qlla~a--lGg----------~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~-~~~~ 154 (229)
+.+++ +++++||||||+|+|+|+.+ +.| ++.++..+.+...|..+.+.. .+++++.++.+. +.+.
T Consensus 80 ~~Ik~f~~~gkpVLGICnG~QlLa~~GlLpg~~~~~~~~~~~L~~N~s~~f~~~~~~~~v~~-~~s~~~~~~~~~~~~~p 158 (261)
T PRK01175 80 KDIEEFIDEGYPIIGICNGFQVLVELGLLPGFDEIAEKPEMALTVNESNRFECRPTYLKKEN-RKCIFTKLLKKDVFQVP 158 (261)
T ss_pred HHHHHHHHCCCeEEEECHHHHHHHHCCCCCCCCccccCCcceEeecCCCCeEEeeeEEEECC-CCChhHhccCCCEEEEe
Confidence 33333 46789999999999999985 555 677776666677776666653 366777666532 3344
Q ss_pred eeecee--e--ecc---CCCCCCeEEEEE------------cCCC---ceEEEEeCCCCcEEEEeccCCCCCC-------
Q 027062 155 RYHSLV--I--EKE---SFPSDALEVTAW------------TEDG---LIMAARHKKYKHLQGVQFHPESIIT------- 205 (229)
Q Consensus 155 ~~H~~~--v--~~~---~l~~~~~~~la~------------~~~~---~i~a~~~~~~~~i~g~QfHPE~~~~------- 205 (229)
..|.+. + +++ .|..++..++-+ ++++ .|+++...+++ ++|++.||||...
T Consensus 159 iah~eG~~~~~~~~~l~~l~~~~~i~~~Y~d~~g~~~~~p~NPNGs~~~IAGi~~~~G~-vlglMpHPEr~~~~~~~~~~ 237 (261)
T PRK01175 159 VAHAEGRVVFSEEEILERLIENDQIVFRYVDENGNYAGYPWNPNGSIYNIAGITNEKGN-VIGLMPHPERAFYGYQHPYW 237 (261)
T ss_pred eEcCCcceEeCCHHHHHHHHHCCcEEEEEeCCCCCCCCCCCCCCCChhhcceeECCCCC-EEEEcCCHHHhhchhhcccc
Confidence 456432 1 111 223344444444 2333 58999999986 9999999999732
Q ss_pred ------CchHHHHHHHHHHHH
Q 027062 206 ------TEGKTIVRNFIKMIV 220 (229)
Q Consensus 206 ------~~~~~i~~~f~~~~~ 220 (229)
.+|..||+++++.++
T Consensus 238 ~~~~~~~~g~~~f~~~~~~~~ 258 (261)
T PRK01175 238 EKEEDYGDGKIFFDSLINYLR 258 (261)
T ss_pred ccccCCCchHHHHHHHHHHHH
Confidence 278999999987553
No 80
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.79 E-value=4.8e-18 Score=131.86 Aligned_cols=166 Identities=12% Similarity=0.196 Sum_probs=115.6
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCC----CCcchHHHHHHHhCCCCcE
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP----QDSGISLQTVLELGPTVPL 100 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~----~~~~~~~~~i~~~~~~~Pv 100 (229)
++|.|+...+.+.. -.++|++.|+++.+++. .++++ ++|+||||||.+.. .....+.+.+++...++|+
T Consensus 3 ~~igVLalqG~~~E-h~~al~~lG~~v~~v~~----~~~l~--~~D~LILPGG~~t~~~~ll~~~~l~~~Ik~~~~~kpi 75 (179)
T PRK13526 3 QKVGVLAIQGGYQK-HADMFKSLGVEVKLVKF----NNDFD--SIDRLVIPGGESTTLLNLLNKHQIFDKLYNFCSSKPV 75 (179)
T ss_pred cEEEEEECCccHHH-HHHHHHHcCCcEEEECC----HHHHh--CCCEEEECCChHHHHHHHhhhcCcHHHHHHHHcCCcE
Confidence 78999999888776 55789999999877763 35665 67999999996543 1122245556554446899
Q ss_pred EEEehhHHHHHH---HhC---CeeeecCCccccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccCCCCCCeEEE
Q 027062 101 FGVCMGLQCIGE---AFG---GKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVT 174 (229)
Q Consensus 101 lGIC~G~Qlla~---alG---g~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~~~~l 174 (229)
+|||.|+|+|+. .|| ++|.++.+++....+... +. +.+. .+...+...-.|.+ ..++.+++
T Consensus 76 lGICaG~qlL~~~s~~Lg~idg~V~Rn~~Grq~~sf~~~-~~-------~~~~--~~~~vFiRAP~i~~---~~~~v~vl 142 (179)
T PRK13526 76 FGTCAGSIILSKGEGYLNLLDLEVQRNAYGRQVDSFVAD-IS-------FNDK--NITGVFIRAPKFIV---VGNQVDIL 142 (179)
T ss_pred EEEcHHHHHHHccCCCCCCccEEEEEcCCCCccceeeee-cC-------cCCc--eEEEEEEcCceEeE---cCCCcEEE
Confidence 999999999998 344 788888876544433211 10 1122 36666666666765 46789999
Q ss_pred EEcCCCceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHH
Q 027062 175 AWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 217 (229)
Q Consensus 175 a~~~~~~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~ 217 (229)
|+-+ +.+.+++.. +++++-||||.+ +..++.+.|++
T Consensus 143 a~~~-~~~v~v~q~---~~l~~~FHPElt---~d~r~h~~f~~ 178 (179)
T PRK13526 143 SKYQ-NSPVLLRQA---NILVSSFHPELT---QDPTVHEYFLA 178 (179)
T ss_pred EEEC-CEEEEEEEC---CEEEEEeCCccC---CCchHHHHHhc
Confidence 9885 456677665 499999999996 34577777764
No 81
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=99.78 E-value=8.6e-19 Score=149.34 Aligned_cols=195 Identities=16% Similarity=0.249 Sum_probs=120.7
Q ss_pred CCCceEEEEECCCchhHH---HHHHHHHc----CC--EEEEEeCCc---cCH----H---H-Hhcc-CCCEEEECCCCCC
Q 027062 22 NNKNPIIVIDNYDSFTYN---LCQYMGEL----GY--HFEVYRNDE---LTV----E---E-LKRK-NPRGVLISPGPGA 80 (229)
Q Consensus 22 ~~~~~ilvid~~~~~~~~---~~~~l~~~----g~--~~~v~~~~~---~~~----~---~-l~~~-~~dgiii~GG~~~ 80 (229)
...-+|+++.-|..+..+ +.++|+.+ +. ++.++...+ .+. . + .+.. ..|||+++||.++
T Consensus 296 ~~~V~IalVGKYt~l~DsY~Sv~KAL~Ha~~~~~~kl~i~wi~s~dLE~~t~~e~~~~~~~aW~~l~~adGilvPGGFG~ 375 (585)
T KOG2387|consen 296 QVPVRIALVGKYTKLSDSYLSVVKALEHAALAINRKLEIVWIDSSDLEPETEQEDPRKYHAAWQKLKSADGILVPGGFGD 375 (585)
T ss_pred cCcEEEEEEeccccchHHHHHHHHHHHHHHHHhcccceEEEEehhcccccccccChhHHHHHHHHhccCCeEEeCCcccc
Confidence 345689999888665544 44555433 33 334443311 000 0 0 0001 4699999999999
Q ss_pred CCCcchHHHHHHHhCCCCcEEEEehhHHHHHHHhCCeeeecCCc------c----------------c------cCccce
Q 027062 81 PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLG------V----------------M------HGKSSL 132 (229)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~PvlGIC~G~Qlla~alGg~v~~~~~~------~----------------~------~g~~~~ 132 (229)
..-++.....-++.++++|+||||+|||+.+..|..++...+.. + . .|....
T Consensus 376 RGveG~i~Aak~ARen~iP~LGiCLGmQ~AvIEfaRnvLg~~dAnStEF~p~~~~~vVi~MPE~~~~~mGgtMRLG~R~t 455 (585)
T KOG2387|consen 376 RGVEGKILAAKWARENKIPFLGICLGMQLAVIEFARNVLGLKDANSTEFDPETKNPVVIFMPEHNKTHMGGTMRLGSRRT 455 (585)
T ss_pred cchhHHHHHHHHHHhcCCCeEeeehhhhHHHHHHHHHhhCCCCCCccccCCCCCCcEEEECcCCCcccccceeeecccce
Confidence 98888887777778889999999999999998765444332200 0 0 011111
Q ss_pred eEeccCCCCcccccCC---Cceeeeeeeceeeecc---CCCCCCeEEEEEcCCC-ceEEEEeCCCCcEEEEeccCCCCCC
Q 027062 133 VYYDEKGEDGLLAGLS---NPFTAGRYHSLVIEKE---SFPSDALEVTAWTEDG-LIMAARHKKYKHLQGVQFHPESIIT 205 (229)
Q Consensus 133 ~~~~~~~~~~l~~~l~---~~~~~~~~H~~~v~~~---~l~~~~~~~la~~~~~-~i~a~~~~~~~~i~g~QfHPE~~~~ 205 (229)
+..+ .+...+.|. +...-.+-|.|+|+++ .+...|+..++.++++ ..+.++.+++|++.|+|||||+...
T Consensus 456 ~f~~---~~s~~~kLYG~~~~V~ERHRHRyEVNP~~v~~le~~Gl~FvGkd~~g~rmeI~El~~HP~fVg~QfHPE~~sr 532 (585)
T KOG2387|consen 456 VFQD---KDSKLRKLYGNVEFVDERHRHRYEVNPEMVKQLEQAGLSFVGKDVTGKRMEIIELESHPFFVGVQFHPEFKSR 532 (585)
T ss_pred eeec---CchHHHHHhCCchhhhhhhhcceecCHHHHHHHHhcCcEEEeecCCCcEEEEEEcCCCCceeeeccCHHHhcC
Confidence 1111 011111111 2233457789999875 3456799999999877 6899999999999999999999865
Q ss_pred C-chHHHHHHHHHHH
Q 027062 206 T-EGKTIVRNFIKMI 219 (229)
Q Consensus 206 ~-~~~~i~~~f~~~~ 219 (229)
+ ...+.|-..+.+.
T Consensus 533 p~kpsp~flGlv~as 547 (585)
T KOG2387|consen 533 PDKPSPLFLGLVAAS 547 (585)
T ss_pred CCCCCcchhHhHHHH
Confidence 5 3334444444443
No 82
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=99.76 E-value=1.6e-17 Score=136.31 Aligned_cols=183 Identities=16% Similarity=0.229 Sum_probs=116.6
Q ss_pred EEEEECCCc-hhHHHHHHHHHcCCEEEEEeCCccCHH--HHhccCCCEEEECCCCCCCCCc--------ch-HHHHHHH-
Q 027062 27 IIVIDNYDS-FTYNLCQYMGELGYHFEVYRNDELTVE--ELKRKNPRGVLISPGPGAPQDS--------GI-SLQTVLE- 93 (229)
Q Consensus 27 ilvid~~~~-~~~~~~~~l~~~g~~~~v~~~~~~~~~--~l~~~~~dgiii~GG~~~~~~~--------~~-~~~~i~~- 93 (229)
|+||-+.++ ....+.++|+++|+++.+++..+.... +++ ++|+|||+||+...... .. ..+.+++
T Consensus 1 v~vl~~pG~n~~~~~~~al~~aG~~v~~v~~~~~~~~~~~l~--~~d~liipGG~~~~d~l~~~~~~~~~~~~~~~l~~~ 78 (238)
T cd01740 1 VAVLRFPGSNCDRDMAYAFELAGFEAEDVWHNDLLAGRKDLD--DYDGVVLPGGFSYGDYLRAGAIAAASPLLMEEVKEF 78 (238)
T ss_pred CEEEEcCCcCCHHHHHHHHHHcCCCEEEEeccCCccccCCHh--hCCEEEECCCCCcccccccccccccChhHHHHHHHH
Confidence 466766655 557789999999999998886532111 233 67999999997422111 11 3344443
Q ss_pred hCCCCcEEEEehhHHHHHHH--hCCeeeecCCccccCcc----ceeEeccCCCCccccc--CCCceeeeeeecee---ee
Q 027062 94 LGPTVPLFGVCMGLQCIGEA--FGGKIVRSPLGVMHGKS----SLVYYDEKGEDGLLAG--LSNPFTAGRYHSLV---IE 162 (229)
Q Consensus 94 ~~~~~PvlGIC~G~Qlla~a--lGg~v~~~~~~~~~g~~----~~~~~~~~~~~~l~~~--l~~~~~~~~~H~~~---v~ 162 (229)
.++++|+||||.|+|+|+.+ ++|++...+.......+ ..+.+. ..++.++.. .+..+.++..|++. .+
T Consensus 79 ~~~g~pvlGIC~G~QlL~~~gll~g~~~~~~~~~~~~~~~~~~v~~~v~-~~~si~t~~~~~g~~l~~~vaHgeG~~~~~ 157 (238)
T cd01740 79 AERGGLVLGICNGFQILVELGLLPGALIRNKGLKFICRWQNRFVTLRVE-NNDSPFTKGYMEGEVLRIPVAHGEGRFYAD 157 (238)
T ss_pred HhCCCeEEEECcHHHHHHHcCCCccccccCCCCceeccccCceEEEEEc-CCCCceecCCCCCCEEEEEeECCceeeEcC
Confidence 35789999999999999998 99988776643333322 333332 235667765 34567788888763 11
Q ss_pred cc---CCCCCCeEEEEE-------------cCCC---ceEEEEeCCCCcEEEEeccCCCCCCC----------chHHHHH
Q 027062 163 KE---SFPSDALEVTAW-------------TEDG---LIMAARHKKYKHLQGVQFHPESIITT----------EGKTIVR 213 (229)
Q Consensus 163 ~~---~l~~~~~~~la~-------------~~~~---~i~a~~~~~~~~i~g~QfHPE~~~~~----------~~~~i~~ 213 (229)
++ .+..++..+ -+ ++++ .|+++...+++ ++|++.||||...+ ++..+|+
T Consensus 158 ~~~~~~l~~~~~i~-~y~~~~~~~~~~yp~NPnGs~~~iAgi~~~~Gr-vlglMphPer~~~~~q~~~~~~~~~~~~~F~ 235 (238)
T cd01740 158 DETLAELEENGQIA-QYVDDDGNVTERYPANPNGSLDGIAGICNEDGR-VLGMMPHPERAVEPWQWERLLGGSDGLKLFR 235 (238)
T ss_pred HHHHHHHHHCCCEE-EEEcCCCCccccCCCCCCCChhcceEEEcCCCC-EEEEcCChHHcccccccccccCCCccHHHHh
Confidence 11 111122222 11 2344 48999999986 99999999997433 5677776
Q ss_pred H
Q 027062 214 N 214 (229)
Q Consensus 214 ~ 214 (229)
+
T Consensus 236 ~ 236 (238)
T cd01740 236 N 236 (238)
T ss_pred h
Confidence 6
No 83
>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]
Probab=99.72 E-value=1.1e-17 Score=132.68 Aligned_cols=165 Identities=17% Similarity=0.276 Sum_probs=107.2
Q ss_pred hHHHHHHHHHcCCEEEEEeCCccCHHHHhcc--CCCEEEECCCCCCCCCcchHHHHHHH-------hCCCCcEEEEehhH
Q 027062 37 TYNLCQYMGELGYHFEVYRNDELTVEELKRK--NPRGVLISPGPGAPQDSGISLQTVLE-------LGPTVPLFGVCMGL 107 (229)
Q Consensus 37 ~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~--~~dgiii~GG~~~~~~~~~~~~~i~~-------~~~~~PvlGIC~G~ 107 (229)
..++++.++..|++|.++.++ .+.+.+... -++|||++||-....+.-++.+.+.. .+..+||+|||+|+
T Consensus 79 AASYVK~aEsgGARViPli~n-epEe~lfqklelvNGviftGGwak~~dY~~vvkkifnk~le~nDaGehFPvyg~CLGF 157 (340)
T KOG1559|consen 79 AASYVKLAESGGARVIPLIYN-EPEEILFQKLELVNGVIFTGGWAKRGDYFEVVKKIFNKVLERNDAGEHFPVYGICLGF 157 (340)
T ss_pred HHHHHHHHHcCCceEEEEecC-CcHHHHHHHHHHhceeEecCcccccccHHHHHHHHHHHHHhccCCccccchhhhhhhH
Confidence 467999999999999999987 444443221 47999999996655565555555432 25679999999999
Q ss_pred HHHHHHhC-CeeeecCCccccCccceeEeccC--CCCcccccCC--------CceeeeeeeceeeeccCCC-----CCCe
Q 027062 108 QCIGEAFG-GKIVRSPLGVMHGKSSLVYYDEK--GEDGLLAGLS--------NPFTAGRYHSLVIEKESFP-----SDAL 171 (229)
Q Consensus 108 Qlla~alG-g~v~~~~~~~~~g~~~~~~~~~~--~~~~l~~~l~--------~~~~~~~~H~~~v~~~~l~-----~~~~ 171 (229)
.+|..... ++........ .....++..... ....+|..+| .+-.+.+.|.+.+++..+. ..-|
T Consensus 158 E~lsmiISqnrdile~~d~-vd~AssLqF~~nvn~~~t~FQrFPpELLkkL~~dcLvmq~Hk~gisp~nF~~N~~Ls~FF 236 (340)
T KOG1559|consen 158 ELLSMIISQNRDILERFDA-VDVASSLQFVGNVNIHGTMFQRFPPELLKKLSTDCLVMQNHKFGISPKNFQGNPALSSFF 236 (340)
T ss_pred HHHHHHHhcChhHHHhhcc-cccccceeeecccceeehhHhhCCHHHHHHhccchheeeccccccchhhccCCHHHHHHH
Confidence 99998754 2211111000 111111222110 1234454444 4456889999999876542 2336
Q ss_pred EEEEEcCCC----ceEEEEeCCCCcEEEEeccCCCCC
Q 027062 172 EVTAWTEDG----LIMAARHKKYKHLQGVQFHPESII 204 (229)
Q Consensus 172 ~~la~~~~~----~i~a~~~~~~~~i~g~QfHPE~~~ 204 (229)
.++.++.|+ .+..++.+.|| ++|+|||||+.+
T Consensus 237 nilTT~~D~~~k~fvSTv~~~kYP-vtgfQWHPEKna 272 (340)
T KOG1559|consen 237 NILTTCTDGNSKTFVSTVESKKYP-VTGFQWHPEKNA 272 (340)
T ss_pred hheeeecCCCceEEEEeecceecc-ceeeeecCccCc
Confidence 677776555 57778888898 999999999964
No 84
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=99.67 E-value=1.1e-15 Score=126.12 Aligned_cols=191 Identities=17% Similarity=0.232 Sum_probs=115.3
Q ss_pred CceEEEEECCCch-hHHHHHHHHHcCCEEEEEeCCccC--HHHHhccCCCEEEECCCCCCCC--Ccch-----------H
Q 027062 24 KNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELT--VEELKRKNPRGVLISPGPGAPQ--DSGI-----------S 87 (229)
Q Consensus 24 ~~~ilvid~~~~~-~~~~~~~l~~~g~~~~v~~~~~~~--~~~l~~~~~dgiii~GG~~~~~--~~~~-----------~ 87 (229)
+.||+|+-+.++. ...+..+++.+|++++.+...+.- ...++ ++|+|+|+||.+.-. ..+. +
T Consensus 1 kpkV~Vl~~pGtNce~e~~~A~~~aG~~~~~v~~~dl~~~~~~l~--~~~~lvipGGFS~gD~l~sg~~~a~~~~~~~~~ 78 (259)
T PF13507_consen 1 KPKVAVLRFPGTNCERETAAAFENAGFEPEIVHINDLLSGESDLD--DFDGLVIPGGFSYGDYLRSGAIAAARLLFNSPL 78 (259)
T ss_dssp --EEEEEE-TTEEEHHHHHHHHHCTT-EEEEEECCHHHTTS--GC--C-SEEEE-EE-GGGGTTSTTHHHHHHHCCSCCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHcCCCceEEEEEecccccCchh--hCcEEEECCccCccccchHHHHHHHHhhccHHH
Confidence 4689999987774 577899999999999998865321 12333 689999999965322 1222 1
Q ss_pred HHHHHH-hCC-CCcEEEEehhHHHHHHH--hCC----------eeeecCCccccCccceeEeccCCCCcccccCCCceee
Q 027062 88 LQTVLE-LGP-TVPLFGVCMGLQCIGEA--FGG----------KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTA 153 (229)
Q Consensus 88 ~~~i~~-~~~-~~PvlGIC~G~Qlla~a--lGg----------~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~ 153 (229)
.+.+.+ +++ ++++||||.|+|+|.+. +++ ++.++..+.+...|..+......+...++++ +.+.+
T Consensus 79 ~~~i~~f~~~~g~~vLGIcNGfQiL~~~Gllp~~~~~~~~~~~~L~~N~s~~fe~rwv~~~v~~~s~~~~~~~~-~~~~l 157 (259)
T PF13507_consen 79 MDAIREFLERPGGFVLGICNGFQILVELGLLPGGEIKDSEQSPALTPNASGRFESRWVNLVVNENSPSIFLRGL-EGIVL 157 (259)
T ss_dssp HHHHHHHHHCTT-EEEEECHHHHHHCCCCCSTT------TT--EEE--TTSS-EEEEEEEEE--SSTTCCCTTT-TCEEE
T ss_pred HHHHHHHHhcCCCeEEEEchHhHHHHHhCcCCCccccccCCCcEEcCCCCCCeEEEEEEEEEecCCcceecCCC-CEEEE
Confidence 334443 344 89999999999999986 777 7888877777777766654343344445555 34555
Q ss_pred eeeecee---e-ecc---CCCCCCeEEEEEcCC----------------CceEEEEeCCCCcEEEEeccCCCCCC-----
Q 027062 154 GRYHSLV---I-EKE---SFPSDALEVTAWTED----------------GLIMAARHKKYKHLQGVQFHPESIIT----- 205 (229)
Q Consensus 154 ~~~H~~~---v-~~~---~l~~~~~~~la~~~~----------------~~i~a~~~~~~~~i~g~QfHPE~~~~----- 205 (229)
.-.|.+. + +++ .+..++..++-+.++ ..|+++...+++ ++|++.|||+...
T Consensus 158 PiahgeG~~~~~~~~~l~~l~~~~qi~~~Y~~~~g~~a~~yP~NPNGS~~~IAGics~~Gr-vlglMpHPEr~~~~~~~~ 236 (259)
T PF13507_consen 158 PIAHGEGRFYARDEATLEELEENGQIAFRYVDEEGNPAQEYPRNPNGSVNNIAGICSPDGR-VLGLMPHPERAFEPWQWP 236 (259)
T ss_dssp EEEESS-EEE-SSHHHHHHHCCTTEEEEEECSTTSSB--STTTSSS--GGGEEEEE-TTSS-EEEESSBCCGTTCCCCSS
T ss_pred EEecCcceeecCCHHHHHHHHhcCeEEEEEecCCCCcccCCCCCCCCCccceeEEEcCCCC-EEEEcCChHHhCchhhcC
Confidence 5566543 2 111 233455555555432 369999999986 9999999999731
Q ss_pred ---------CchHHHHHHHHHH
Q 027062 206 ---------TEGKTIVRNFIKM 218 (229)
Q Consensus 206 ---------~~~~~i~~~f~~~ 218 (229)
..+..||+|-+++
T Consensus 237 ~~p~~~~~~s~~~~~F~n~~~w 258 (259)
T PF13507_consen 237 HWPREKWQESPWLRIFQNAVEW 258 (259)
T ss_dssp -S--TT--B-TTHHHHHHHHH-
T ss_pred CCCccccCCChHHHHHHHHhhc
Confidence 2367888877665
No 85
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=99.65 E-value=2e-15 Score=125.45 Aligned_cols=178 Identities=18% Similarity=0.271 Sum_probs=114.8
Q ss_pred eEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCC------CcchHHHHHHH-hCCCC
Q 027062 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ------DSGISLQTVLE-LGPTV 98 (229)
Q Consensus 26 ~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~------~~~~~~~~i~~-~~~~~ 98 (229)
.+.+||...+..+++..+++.+|+.+..+.. ..++. +-|-+|++| .++.. ...-+.+.+++ +++++
T Consensus 3 vv~~ld~~agn~~si~nal~hlg~~i~~v~~----P~DI~--~a~rLIfPG-VGnfg~~~D~L~~~Gf~eplr~Yiesgk 75 (541)
T KOG0623|consen 3 VVTLLDYGAGNVRSIRNALRHLGFSIKDVQT----PGDIL--NADRLIFPG-VGNFGPAMDVLNRTGFAEPLRKYIESGK 75 (541)
T ss_pred eEEEEecCCccHHHHHHHHHhcCceeeeccC----chhhc--cCceEeecC-cccchHHHHHHhhhhhHHHHHHHHhcCC
Confidence 4788999888999999999999999987753 24555 447888876 33221 11123445554 56889
Q ss_pred cEEEEehhHHHHHHH------------hCCeeeecC---CccccCccceeEeccCCCCcccccCCCceeeeeeeceeeec
Q 027062 99 PLFGVCMGLQCIGEA------------FGGKIVRSP---LGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEK 163 (229)
Q Consensus 99 PvlGIC~G~Qlla~a------------lGg~v~~~~---~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~ 163 (229)
|++|||.|.|+|... +.|.|.+.. ....|..|+...+. .++.+| ++...-.+++.|++....
T Consensus 76 PfmgicvGlQaLF~gSvE~p~skGLgvipg~v~RFD~s~k~VPhIGWNsc~v~--sd~eff-g~~p~~~~YFVHSyl~~e 152 (541)
T KOG0623|consen 76 PFMGICVGLQALFDGSVENPPSKGLGVIPGIVGRFDASAKIVPHIGWNSCQVG--SDSEFF-GDVPNRHVYFVHSYLNRE 152 (541)
T ss_pred CeEeehhhHHHHhcccccCCCcCcccccccceecccCCCCcCCcccccccccC--Cccccc-ccCCCceEEEEeeecccc
Confidence 999999999999652 223333321 11123334333222 133344 444456788999986532
Q ss_pred c--CCCCCCeEEEEEcCCC---ceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHH
Q 027062 164 E--SFPSDALEVTAWTEDG---LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 218 (229)
Q Consensus 164 ~--~l~~~~~~~la~~~~~---~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~ 218 (229)
. .+.++++++ |+...+ .|.+++-. +++++|||||.+ .+.|...+++|+..
T Consensus 153 k~~~len~~wki-at~kYG~E~Fi~ai~kn---N~~AtQFHPEKS-G~aGL~vl~~FL~~ 207 (541)
T KOG0623|consen 153 KPKSLENKDWKI-ATCKYGSESFISAIRKN---NVHATQFHPEKS-GEAGLSVLRRFLHQ 207 (541)
T ss_pred cccCCCCCCceE-eeeccCcHHHHHHHhcC---ceeeEecccccc-cchhHHHHHHHHhc
Confidence 2 455667764 444333 56666543 499999999997 77899999999983
No 86
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=99.60 E-value=7.5e-14 Score=107.02 Aligned_cols=171 Identities=22% Similarity=0.344 Sum_probs=106.4
Q ss_pred ceEEEEECCCchhHHHHHHHHHc-CCEEEEEeCCccCHHHHhccCCCEEEECCCCCCC-----CCcchHHHHHH-HhCCC
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP-----QDSGISLQTVL-ELGPT 97 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~-g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~-----~~~~~~~~~i~-~~~~~ 97 (229)
|+|-|+-..+.+..-+ ++++++ |+++..++. .++++ .+||+|||||.+.. .+.+.+ +.++ ....+
T Consensus 1 m~IGVLalQG~v~EH~-~~l~~~~~~e~~~Vk~----~~dL~--~~d~LIiPGGESTTi~rL~~~~gl~-e~l~~~~~~G 72 (194)
T COG0311 1 MKIGVLALQGAVEEHL-EALEKAGGAEVVEVKR----PEDLE--GVDGLIIPGGESTTIGRLLKRYGLL-EPLREFIADG 72 (194)
T ss_pred CeEEEEEecccHHHHH-HHHHhhcCCceEEEcC----HHHhc--cCcEEEecCccHHHHHHHHHHcCcH-HHHHHHHHcC
Confidence 5788887766666554 567777 488877763 46777 46999999997643 122222 3333 34578
Q ss_pred CcEEEEehhHHHHHHHhCC------------eeeecCCccccCccceeEeccCCCCcccccCCC--ceeeeeeeceeeec
Q 027062 98 VPLFGVCMGLQCIGEAFGG------------KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSN--PFTAGRYHSLVIEK 163 (229)
Q Consensus 98 ~PvlGIC~G~Qlla~alGg------------~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~--~~~~~~~H~~~v~~ 163 (229)
+|+||+|.|+-+|+...-+ +|.|+.+|+....... .--++++.. .+.+.+...-.|.+
T Consensus 73 ~Pv~GTCAGlIlLakei~~~~~~~~Lg~mdi~V~RNAfGRQ~dSFe~--------~~di~~~~~~~~~~avFIRAP~I~~ 144 (194)
T COG0311 73 LPVFGTCAGLILLAKEILDGPEQPLLGLLDVTVRRNAFGRQVDSFET--------ELDIEGFGLPFPFPAVFIRAPVIEE 144 (194)
T ss_pred CceEEechhhhhhhhhhcCCCCCcccceEEEEEEcccccccccccee--------eEEeecccCCCcceEEEEEcceeeh
Confidence 9999999999999964332 3444444332221110 001122222 25556666666665
Q ss_pred cCCCCCCeEEEEEcCCCceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHHHHH
Q 027062 164 ESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVR 221 (229)
Q Consensus 164 ~~l~~~~~~~la~~~~~~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~~~~ 221 (229)
..++.+++|+-++ .+.|.+.+ +++++-||||.+. ..++.+.|++.+..
T Consensus 145 ---vg~~V~vLa~l~~-~iVav~qg---n~LatsFHPELT~---D~r~Heyf~~~v~~ 192 (194)
T COG0311 145 ---VGDGVEVLATLDG-RIVAVKQG---NILATSFHPELTD---DTRLHEYFLDMVLG 192 (194)
T ss_pred ---hcCcceEeeeeCC-EEEEEEeC---CEEEEecCccccC---CccHHHHHHHHhhc
Confidence 3357899998765 55565554 3999999999973 33677777766553
No 87
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=99.53 E-value=6.3e-14 Score=108.56 Aligned_cols=165 Identities=24% Similarity=0.400 Sum_probs=97.4
Q ss_pred CchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCC----CcchHHHHHHHh-CCC-CcEEEEehhH
Q 027062 34 DSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ----DSGISLQTVLEL-GPT-VPLFGVCMGL 107 (229)
Q Consensus 34 ~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~----~~~~~~~~i~~~-~~~-~PvlGIC~G~ 107 (229)
+.+..-+ +.|+++|.+...++. .++|+ ++||+|||||.++.- ....+.+.++++ ..+ +||||+|.|+
T Consensus 6 G~~~EH~-~~l~~lg~~~~~Vr~----~~dL~--~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGl 78 (188)
T PF01174_consen 6 GAFREHI-RMLERLGAEVVEVRT----PEDLE--GLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGL 78 (188)
T ss_dssp SSHHHHH-HHHHHTTSEEEEE-S----GGGGT--T-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHHH
T ss_pred cChHHHH-HHHHHcCCCeEEeCC----HHHHc--cCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHHH
Confidence 3444333 568889999987764 36676 569999999976421 111123445543 344 9999999999
Q ss_pred HHHHHH--------hCC---eeeecCCccccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccCCCCCCeEEEEE
Q 027062 108 QCIGEA--------FGG---KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAW 176 (229)
Q Consensus 108 Qlla~a--------lGg---~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~~~~la~ 176 (229)
-+|+.. +|+ +|.|+.+|+....... .+ -+.++..++.+.+..--.|.+-. .+++..+++.
T Consensus 79 IlLa~~v~~~~q~~Lg~ldi~V~RNafGrQ~~SFe~-~l-------~i~~~~~~~~avFIRAP~I~~v~-~~~~v~vla~ 149 (188)
T PF01174_consen 79 ILLAKEVEGQGQPLLGLLDITVRRNAFGRQLDSFEA-DL-------DIPGLGEPFPAVFIRAPVIEEVG-SPEGVEVLAE 149 (188)
T ss_dssp HHHEEEECSSCCTSS--EEEEEETTTTCSSSCEEEE-EE-------EETTTESEEEEEESS--EEEEE---TTTEEEEEE
T ss_pred HHhhhhhhhcccccccceeEEEEccccccchhcEEE-EE-------EeecCCCcEEEEEcCCcEEEEee-cccccccccc
Confidence 999973 332 5666665543322110 01 11223356777777766665410 1367888887
Q ss_pred cCCCceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHHHH
Q 027062 177 TEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 220 (229)
Q Consensus 177 ~~~~~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~~~ 220 (229)
.+. .+.+++.+ +++++-||||.+ .++.++.+.|++.+.
T Consensus 150 ~~g-~iVav~qg---n~latsFHPELT--~D~~r~H~yFl~~v~ 187 (188)
T PF01174_consen 150 LDG-KIVAVRQG---NILATSFHPELT--DDDTRIHEYFLEMVV 187 (188)
T ss_dssp ETT-EEEEEEET---TEEEESS-GGGS--STHCHHHHHHHHHHC
T ss_pred ccc-ceEEEEec---CEEEEEeCCccc--CchhHHHHHHHHHhh
Confidence 764 66677744 499999999995 455789999998763
No 88
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=99.53 E-value=3.6e-13 Score=130.25 Aligned_cols=196 Identities=15% Similarity=0.185 Sum_probs=126.9
Q ss_pred cCCCceEEEEECCCch-hHHHHHHHHHcCCEEEEEeCCccC-------HHHHh-c-cCCCEEEECCCCCCCCC---cchH
Q 027062 21 KNNKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELT-------VEELK-R-KNPRGVLISPGPGAPQD---SGIS 87 (229)
Q Consensus 21 ~~~~~~ilvid~~~~~-~~~~~~~l~~~g~~~~v~~~~~~~-------~~~l~-~-~~~dgiii~GG~~~~~~---~~~~ 87 (229)
...++||+|+.+.++. ......+++.+|+++..+...+.. .+.+. . .++++|+++||.+.-.. .+.|
T Consensus 974 ~~~kpkvaIl~~pGtNce~d~a~Af~~aG~~~~~v~~~dl~~~~i~~s~~~~~~~l~~~~~l~~pGGFSyGD~l~~~~~~ 1053 (1239)
T TIGR01857 974 KVEKPRVVIPVFPGTNSEYDSAKAFEKEGAEVNLVIFRNLNEEALVESVETMVDEIDKSQILMLPGGFSAGDEPDGSAKF 1053 (1239)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHcCCceEEEEEecCcccccccchhhhhcccccCcEEEEcCccCcccccchhHHH
Confidence 3467999999998775 467889999999998877754321 12221 1 26899999999653221 2233
Q ss_pred H----------HHHHH-hCCCCcEEEEehhHHHHHHH--h--CC---------eeeecCCccccCccceeEeccCCCCcc
Q 027062 88 L----------QTVLE-LGPTVPLFGVCMGLQCIGEA--F--GG---------KIVRSPLGVMHGKSSLVYYDEKGEDGL 143 (229)
Q Consensus 88 ~----------~~i~~-~~~~~PvlGIC~G~Qlla~a--l--Gg---------~v~~~~~~~~~g~~~~~~~~~~~~~~l 143 (229)
+ +.+.+ +.++.++||||.|+|+|+.. + |. ++.++..+.+...+..+.+.. .++++
T Consensus 1054 ~aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~~lGLlP~~~~~~~~~~~p~l~~N~s~rf~~r~v~~~v~~-~~s~~ 1132 (1239)
T TIGR01857 1054 IAAILRNPKVRVAIDSFLARDGLILGICNGFQALVKSGLLPYGNIEAANETSPTLTYNDINRHVSKIVRTRIAS-TNSPW 1132 (1239)
T ss_pred HHHHhhChHHHHHHHHHHhCCCcEEEechHHHHHHHcCCCcCccccccccCCceeeecCCCCeEEeeeEEEECC-CCChh
Confidence 2 22222 35789999999999999885 2 22 455555556666666666554 46788
Q ss_pred cccCC--Cceeeeeeecee---eecc---CCCCCCeEEEEE-------------cCCC---ceEEEEeCCCCcEEEEecc
Q 027062 144 LAGLS--NPFTAGRYHSLV---IEKE---SFPSDALEVTAW-------------TEDG---LIMAARHKKYKHLQGVQFH 199 (229)
Q Consensus 144 ~~~l~--~~~~~~~~H~~~---v~~~---~l~~~~~~~la~-------------~~~~---~i~a~~~~~~~~i~g~QfH 199 (229)
+.++. ..+.+...|... .+.+ .+..++..++-+ +++| .|+++...+++ ++|.+.|
T Consensus 1133 ~~~~~~g~~~~ipvaHgEGrf~~~~~~l~~l~~~~qva~rYvd~~g~~t~~~p~NPNGS~~~IaGi~s~dGr-vlg~MpH 1211 (1239)
T TIGR01857 1133 LSGVSVGDIHAIPVSHGEGRFVASDEVLAELRENGQIATQYVDFNGKPSMDSKYNPNGSSLAIEGITSPDGR-IFGKMGH 1211 (1239)
T ss_pred HhcCCCCCEEEEEeEcCCcceecCHHHHHHHHHCCcEEEEEeCCCCCcccCCCCCCCCChhhhhEeECCCCC-EEEECCC
Confidence 87764 346667777643 1111 122233333333 2333 58999999986 9999999
Q ss_pred CCCCCC--------CchHHHHHHHHHH
Q 027062 200 PESIIT--------TEGKTIVRNFIKM 218 (229)
Q Consensus 200 PE~~~~--------~~~~~i~~~f~~~ 218 (229)
|||... .++..||++.++.
T Consensus 1212 pER~~~~~~~~~~g~~~~~iF~~~v~y 1238 (1239)
T TIGR01857 1212 SERYGDGLFKNIPGNKDQHLFASGVKY 1238 (1239)
T ss_pred cccccCcccCCCCchhhhHHHHHHHhh
Confidence 999742 1458899888753
No 89
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=99.40 E-value=1.2e-11 Score=120.61 Aligned_cols=194 Identities=19% Similarity=0.175 Sum_probs=124.4
Q ss_pred CCCceEEEEECCCch-hHHHHHHHHHcCCEEEEEeCCccCH--HHHhccCCCEEEECCCCC--CCCCcch-H--------
Q 027062 22 NNKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTV--EELKRKNPRGVLISPGPG--APQDSGI-S-------- 87 (229)
Q Consensus 22 ~~~~~ilvid~~~~~-~~~~~~~l~~~g~~~~v~~~~~~~~--~~l~~~~~dgiii~GG~~--~~~~~~~-~-------- 87 (229)
..++||+|+-+.++. ......+++.+|+++..+...+... ..|+ +++||+++||.+ +....+. |
T Consensus 1035 ~~~pkVaVl~~pGtN~~~e~~~Af~~aGf~~~~V~~~dl~~~~~~L~--~~~glv~pGGFSyGD~l~sg~~wa~~i~~n~ 1112 (1307)
T PLN03206 1035 TSKPKVAIIREEGSNGDREMAAAFYAAGFEPWDVTMSDLLNGRISLD--DFRGIVFVGGFSYADVLDSAKGWAGSIRFNE 1112 (1307)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHcCCceEEEEeeeccccccccc--ceeEEEEcCcCCCccccchHHHHHHHHHhCh
Confidence 357899999997774 5678899999999988777543211 2233 679999999974 3333332 2
Q ss_pred --HHHHHH-h-CCCCcEEEEehhHHHHHHH--hCCe----------------eeecCCccccCccceeEeccCCCCcccc
Q 027062 88 --LQTVLE-L-GPTVPLFGVCMGLQCIGEA--FGGK----------------IVRSPLGVMHGKSSLVYYDEKGEDGLLA 145 (229)
Q Consensus 88 --~~~i~~-~-~~~~PvlGIC~G~Qlla~a--lGg~----------------v~~~~~~~~~g~~~~~~~~~~~~~~l~~ 145 (229)
.+.+.+ + .++.++||||.|+|+|... ++|. +.++..+.+...|..+.+.. .++++|.
T Consensus 1113 ~~~~~~~~f~~~~d~~~LGICNGfQiL~~lgllPg~~~~~~~~~~~~e~~p~l~~N~s~rfesr~v~v~V~~-s~si~l~ 1191 (1307)
T PLN03206 1113 PLLQQFQEFYNRPDTFSLGVCNGCQLMALLGWVPGPQVGGGLGAGGDPSQPRFVHNESGRFECRFTSVTIED-SPAIMLK 1191 (1307)
T ss_pred HHHHHHHHHHhCCCceEEEEcHHHHHHHHcCCCCCCccccccccccccCCceeeecCCCCeEEeceEEEECC-CCChhhc
Confidence 122222 2 3579999999999999885 2221 33444455666666666643 4677887
Q ss_pred cCCC-ceeeeeeeceee---ecc----CCCCCCeEEEEE-------------cCCC---ceEEEEeCCCCcEEEEeccCC
Q 027062 146 GLSN-PFTAGRYHSLVI---EKE----SFPSDALEVTAW-------------TEDG---LIMAARHKKYKHLQGVQFHPE 201 (229)
Q Consensus 146 ~l~~-~~~~~~~H~~~v---~~~----~l~~~~~~~la~-------------~~~~---~i~a~~~~~~~~i~g~QfHPE 201 (229)
++.. .+.++-.|...= ..+ .+..++...+-+ +++| .|+++...+++ ++|.+.|||
T Consensus 1192 ~~~G~~l~i~vaHgEGr~~~~~~~~l~~l~~~gqva~rY~d~~g~~t~~yP~NPNGS~~~IAGi~s~dGR-vlgmMpHPE 1270 (1307)
T PLN03206 1192 GMEGSTLGVWAAHGEGRAYFPDESVLDEVLKSNLAPVRYCDDDGEPTEQYPFNPNGSPLGIAALCSPDGR-HLAMMPHPE 1270 (1307)
T ss_pred ccCCCEEEEEEEcCCCCeecCCHHHHHHHHhcCeEEEEEeCCCCCccCCCCCCCCCChhhceeeECCCCC-EEEEcCCHH
Confidence 7653 356666676431 111 122334333333 2333 58999999987 999999999
Q ss_pred CCCC------------------CchHHHHHHHHHHH
Q 027062 202 SIIT------------------TEGKTIVRNFIKMI 219 (229)
Q Consensus 202 ~~~~------------------~~~~~i~~~f~~~~ 219 (229)
|... ..+..||+|...++
T Consensus 1271 R~~~~~q~~~~p~~~~~~~~~~spw~~~F~na~~w~ 1306 (1307)
T PLN03206 1271 RCFLMWQFPWYPKEWGVDPAGPSPWLKMFQNAREWC 1306 (1307)
T ss_pred HhhhhhhCCCCCccccccCCCCCcHHHHHHHHHHHh
Confidence 9621 14677888776554
No 90
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=99.39 E-value=8e-12 Score=122.49 Aligned_cols=192 Identities=15% Similarity=0.180 Sum_probs=124.8
Q ss_pred CCceEEEEECCCch-hHHHHHHHHHcCCEEEEEeCCccCHH--HHhccCCCEEEECCCCCC--CCCcch-HH--------
Q 027062 23 NKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVE--ELKRKNPRGVLISPGPGA--PQDSGI-SL-------- 88 (229)
Q Consensus 23 ~~~~ilvid~~~~~-~~~~~~~l~~~g~~~~v~~~~~~~~~--~l~~~~~dgiii~GG~~~--~~~~~~-~~-------- 88 (229)
.++||+|+.+.++. ......+++.+|+++..++..+.... .|+ +|+||+++||... ....+. |.
T Consensus 1054 ~~p~vail~~pG~N~~~e~~~Af~~aGf~~~~v~~~dl~~~~~~l~--~~~~lv~~GGFSygD~lgsg~~~a~~i~~~~~ 1131 (1310)
T TIGR01735 1054 VRPKVAILREQGVNGDREMAAAFDRAGFEAWDVHMSDLLAGRVHLD--EFRGLAACGGFSYGDVLGAGKGWAKSILFNPR 1131 (1310)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhCCCcEEEEEeccccCCcchh--heeEEEEcCCCCCccchhHHHHHHHHHHhChH
Confidence 46899999987774 56788899999999888875432222 244 5799999999643 222222 32
Q ss_pred --HHHHH-h-CCCCcEEEEehhHHHHHH---HhCCe-----eeecCCccccCccceeEeccCCCCcccccCCC-ceeeee
Q 027062 89 --QTVLE-L-GPTVPLFGVCMGLQCIGE---AFGGK-----IVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSN-PFTAGR 155 (229)
Q Consensus 89 --~~i~~-~-~~~~PvlGIC~G~Qlla~---alGg~-----v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~-~~~~~~ 155 (229)
+.+.+ + .++.++||||.|+|+|+. .++|. +.++..+.+...|..+.+.. .++++++++.. .+.++-
T Consensus 1132 ~~~~~~~f~~~~d~~~LGiCNGfQ~L~~~~gllp~~~~~p~l~~N~s~~fe~r~~~~~v~~-s~s~~~~~~~g~~l~~~v 1210 (1310)
T TIGR01735 1132 LRDQFQAFFKRPDTFSLGVCNGCQMLSNLLEWIPGTENWPHFVRNNSERFEARVASVRVGE-SPSIMLRGMAGSRLPVAV 1210 (1310)
T ss_pred HHHHHHHHHhCCCceEEEecHHHHHHHHHhCcCCCCCCCceeeecCCCCeEEeeeEEEECC-CCChhhhhcCCCEEEEEe
Confidence 22222 2 577999999999999993 34443 56666666777777777665 36788877653 366666
Q ss_pred eecee---eecc----CCCCCCeEEEEE-------------cCCC---ceEEEEeCCCCcEEEEeccCCCCCC-------
Q 027062 156 YHSLV---IEKE----SFPSDALEVTAW-------------TEDG---LIMAARHKKYKHLQGVQFHPESIIT------- 205 (229)
Q Consensus 156 ~H~~~---v~~~----~l~~~~~~~la~-------------~~~~---~i~a~~~~~~~~i~g~QfHPE~~~~------- 205 (229)
.|+.. +..+ .+..++...+-+ +++| .|+++...+++ ++|.+.||||...
T Consensus 1211 aHgEGr~~~~~~~~~~~l~~~~~ia~~Y~d~~g~~~~~yp~NPNGS~~~IaGi~s~dGr-vl~~MpHPEr~~~~~q~~~~ 1289 (1310)
T TIGR01735 1211 AHGEGYAAFSSPELQAQADASGLAALRYIDDDGNPTEAYPLNPNGSPGGIAGITSCDGR-VTIMMPHPERVFRAWQNSWR 1289 (1310)
T ss_pred EcCCCCeeeCCHHHHHHHHhCCeEEEEEeCCCCCccCCCCCCCCCChhcceEeECCCCC-EEEEcCCHHHhhhHhhCCcC
Confidence 77542 2111 122233333333 2333 48999999986 9999999999621
Q ss_pred C-------chHHHHHHHHHH
Q 027062 206 T-------EGKTIVRNFIKM 218 (229)
Q Consensus 206 ~-------~~~~i~~~f~~~ 218 (229)
+ .+.++|+|-..+
T Consensus 1290 p~~~~~~~pw~~~F~na~~w 1309 (1310)
T TIGR01735 1290 PEDWDEDTPWLRLFRNARNW 1309 (1310)
T ss_pred CCCCCCCCcHHHHHHHHHHh
Confidence 1 356777776543
No 91
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=99.37 E-value=2e-11 Score=119.91 Aligned_cols=193 Identities=16% Similarity=0.235 Sum_probs=125.1
Q ss_pred CCceEEEEECCCch-hHHHHHHHHHcCCEEEEEeCCccCH--HHHhccCCCEEEECCCCCC--CCCcch-HH--------
Q 027062 23 NKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTV--EELKRKNPRGVLISPGPGA--PQDSGI-SL-------- 88 (229)
Q Consensus 23 ~~~~ilvid~~~~~-~~~~~~~l~~~g~~~~v~~~~~~~~--~~l~~~~~dgiii~GG~~~--~~~~~~-~~-------- 88 (229)
.++||+|+-+.++. ......+++.+|+++..+...+... ..|. ++++|+++||... ....+. |.
T Consensus 1034 ~~pkv~il~~pG~N~~~e~~~Af~~aG~~~~~v~~~dl~~~~~~l~--~~~~l~~~GGFS~gD~lgsg~~~a~~~~~n~~ 1111 (1290)
T PRK05297 1034 ARPKVAILREQGVNSHVEMAAAFDRAGFDAIDVHMSDLLAGRVTLE--DFKGLVACGGFSYGDVLGAGEGWAKSILFNPR 1111 (1290)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHcCCCeEEEEeecCcCCCCChh--hCcEEEECCccCCcccchHHHHHHHHhhccHH
Confidence 56899999997774 5678899999999988777543221 2244 6799999999643 222222 22
Q ss_pred --HHHHH-h-CCCCcEEEEehhHHHHHHH--h-CC-----eeeecCCccccCccceeEeccCCCCcccccCCC-ceeeee
Q 027062 89 --QTVLE-L-GPTVPLFGVCMGLQCIGEA--F-GG-----KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSN-PFTAGR 155 (229)
Q Consensus 89 --~~i~~-~-~~~~PvlGIC~G~Qlla~a--l-Gg-----~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~-~~~~~~ 155 (229)
+.+.+ + .++.++||||.|+|+|... + .+ ++.++..+.+...|..+.+.. .++++|.++.. .+.++-
T Consensus 1112 ~~~~~~~f~~~~d~~~LGiCNGfQ~L~~lg~l~p~~~~~p~l~~N~s~rfesr~~~~~v~~-~~s~~~~~~~g~~l~~~v 1190 (1290)
T PRK05297 1112 LRDQFEAFFARPDTFALGVCNGCQMMSNLKEIIPGAEHWPRFVRNRSEQFEARFSLVEVQE-SPSIFLQGMAGSRLPIAV 1190 (1290)
T ss_pred HHHHHHHHHhCCCceEEEEcHHHHHHHHhCCccCCCCCCCeEeecCCCCeEEeeeEEEECC-CCChhHhhcCCCEEEEEE
Confidence 22333 2 5679999999999999986 1 12 355665566677776676654 46788877653 356666
Q ss_pred eecee---eecc---CCCCCCeEEEEE-------------cCCC---ceEEEEeCCCCcEEEEeccCCCCCC-------C
Q 027062 156 YHSLV---IEKE---SFPSDALEVTAW-------------TEDG---LIMAARHKKYKHLQGVQFHPESIIT-------T 206 (229)
Q Consensus 156 ~H~~~---v~~~---~l~~~~~~~la~-------------~~~~---~i~a~~~~~~~~i~g~QfHPE~~~~-------~ 206 (229)
.|... ++.+ .+..++...+-+ ++++ .|+++...+++ ++|.+.||||... +
T Consensus 1191 aHgeGr~~~~~~~~~~l~~~~~ia~~Y~d~~g~~~~~yp~NPNGS~~~IaGi~s~dGr-vlglMpHPEr~~~~~q~~~~p 1269 (1290)
T PRK05297 1191 AHGEGRAEFPDAHLAALEAKGLVALRYVDNHGQVTETYPANPNGSPNGITGLTTADGR-VTIMMPHPERVFRTVQNSWHP 1269 (1290)
T ss_pred EcCcccEEcCHHHHHHHHHCCcEEEEEECCCCCcccCCCCCCCCChhcceEeECCCCC-EEEEcCChHHhcchhhcCcCC
Confidence 67643 2211 122233333332 2344 48999999987 9999999999631 1
Q ss_pred -----ch--HHHHHHHHHHH
Q 027062 207 -----EG--KTIVRNFIKMI 219 (229)
Q Consensus 207 -----~~--~~i~~~f~~~~ 219 (229)
.+ ..+|+|...++
T Consensus 1270 ~~~~~~~PW~~~F~na~~w~ 1289 (1290)
T PRK05297 1270 EEWGEDSPWMRMFRNARKWV 1289 (1290)
T ss_pred CcccCCCHHHHHHHHHHHHh
Confidence 25 67777766543
No 92
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=99.32 E-value=1.5e-11 Score=102.43 Aligned_cols=195 Identities=16% Similarity=0.210 Sum_probs=111.5
Q ss_pred cccCC-CceEEEEECCCch---hHHHHHHHHHcCCEEEEE--eCC-----c----------cCHHHHhccCCCEEEECCC
Q 027062 19 KSKNN-KNPIIVIDNYDSF---TYNLCQYMGELGYHFEVY--RND-----E----------LTVEELKRKNPRGVLISPG 77 (229)
Q Consensus 19 ~~~~~-~~~ilvid~~~~~---~~~~~~~l~~~g~~~~v~--~~~-----~----------~~~~~l~~~~~dgiii~GG 77 (229)
+.+.. ..+|+||+.=..- ..-+.+.|.....++++. ... . .+.++++..++||+||||.
T Consensus 28 ~~qdirpL~I~IlNLMP~K~~TE~Q~lrlL~~tplqv~v~f~~~~sh~~k~t~~~~l~~~Y~~~~~i~~~~~DglIITGA 107 (298)
T PF04204_consen 28 MHQDIRPLKIGILNLMPDKEETERQFLRLLSNTPLQVEVTFLYPASHKSKNTSPEHLEKFYKTFDEIKDRKFDGLIITGA 107 (298)
T ss_dssp --TTS--EEEEEE---SSHHHHHHHHHHHCCSSSS-EEEEEE--S-----SS-HHHHHHHEE-HHHCTTS-EEEEEE---
T ss_pred ccccccceEEEEEecccchHHHHHHHHHHhcCCCCceEEEEEEeccccCCCCCHHHHHHhhhCHHHHhhCCCCEEEEeCC
Confidence 33443 4789999874332 233666666666666543 211 1 1234455557999999999
Q ss_pred CCCCC---CcchH--HHHHHH--hCCCCcEEEEehhHHH-HHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCC
Q 027062 78 PGAPQ---DSGIS--LQTVLE--LGPTVPLFGVCMGLQC-IGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSN 149 (229)
Q Consensus 78 ~~~~~---~~~~~--~~~i~~--~~~~~PvlGIC~G~Ql-la~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~ 149 (229)
|-.-. +.+.| +..|.+ ..+..+.|.||+|.|. |...+|-.-...+.. ..|... ..+. ...++|++|++.
T Consensus 108 PvE~l~Fe~V~YW~El~~i~dwa~~~v~stl~iCWgAqAaLy~~yGI~K~~l~~K-lfGVf~-~~~~-~~~~pLl~Gfdd 184 (298)
T PF04204_consen 108 PVEQLPFEEVDYWDELTEIFDWAKTHVTSTLFICWGAQAALYHFYGIPKYPLPEK-LFGVFE-HRVL-DPDHPLLRGFDD 184 (298)
T ss_dssp TTTTS-GGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHH----EEEEEE-EEEEEE-EEES--SS-GGGTT--S
T ss_pred CcCCCCcccCCcHHHHHHHHHHHHHcCCcchhhhHHHHHHHHHHcCCCcccCCCc-ceecee-eecc-CCCChhhcCCCc
Confidence 86432 22334 222322 2355899999999999 777888877766532 244332 2221 236899999999
Q ss_pred ceeeeeeeceeeeccCC-CCCCeEEEEEcCCCceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHHHHH
Q 027062 150 PFTAGRYHSLVIEKESF-PSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVR 221 (229)
Q Consensus 150 ~~~~~~~H~~~v~~~~l-~~~~~~~la~~~~~~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~~~~ 221 (229)
.|.+.++..-.++.+.+ ..++++++|.+++.-+..+..+++. .+=+|.|||+. ...+.+.+.+.+.+
T Consensus 185 ~f~~PhSR~t~i~~~~i~~~~~L~vLa~s~~~G~~l~~~~d~r-~vfi~GH~EYd----~~TL~~EY~RD~~~ 252 (298)
T PF04204_consen 185 TFFAPHSRYTEIDRDDIKKAPGLEVLAESEEAGVFLVASKDGR-QVFITGHPEYD----ADTLAKEYRRDLAK 252 (298)
T ss_dssp EEEEEEEEEEE--HHHHCT-TTEEEEEEETTTEEEEEEECCCT-EEEE-S-TT------TTHHHHHHHHHHHC
T ss_pred cccCCcccccCCCHHHHhcCCCcEEEeccCCcceEEEEcCCCC-EEEEeCCCccC----hhHHHHHHHHHHhC
Confidence 99998888777776555 4678999999988877788888875 78899999994 55677888877764
No 93
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=99.19 E-value=7.5e-10 Score=91.77 Aligned_cols=189 Identities=19% Similarity=0.220 Sum_probs=123.6
Q ss_pred CceEEEEECCCc---hhHHHHHHHHHcCCEEEE--EeCC-----c----------cCHHHHhccCCCEEEECCCCCCC--
Q 027062 24 KNPIIVIDNYDS---FTYNLCQYMGELGYHFEV--YRND-----E----------LTVEELKRKNPRGVLISPGPGAP-- 81 (229)
Q Consensus 24 ~~~ilvid~~~~---~~~~~~~~l~~~g~~~~v--~~~~-----~----------~~~~~l~~~~~dgiii~GG~~~~-- 81 (229)
..+|+||+.=.. ...-+.+.|.....++.+ +... . .+.++++..++||+||||.|-.-
T Consensus 35 pL~I~ILNLMP~K~~TE~Q~lRlL~ntplqv~i~~~~~~sh~~k~t~~~hl~~fY~~f~~ik~~~fDGlIITGAPvE~l~ 114 (300)
T TIGR01001 35 PLEILILNLMPKKIETENQFLRLLSNSPLQVNITLLRTDSRKSKNTPIEHLNKFYTTFEAVKDRKFDGLIITGAPVELVP 114 (300)
T ss_pred ceeEEEEecCCccHHHHHHHHHHhcCCCCceEEEEEEeccccCCCCCHHHHHHHhhCHHHHhcCCCCEEEEcCCCcCCCC
Confidence 578999987333 123477777666666443 3211 1 23455666689999999998643
Q ss_pred C-CcchH--HHHHHH--hCCCCcEEEEehhHHH-HHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCceeeee
Q 027062 82 Q-DSGIS--LQTVLE--LGPTVPLFGVCMGLQC-IGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGR 155 (229)
Q Consensus 82 ~-~~~~~--~~~i~~--~~~~~PvlGIC~G~Ql-la~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~ 155 (229)
. +.+.| +..|.+ ..+-...|.||+|.|. |...+|-.=...+.. ..|... .... ..++|++|++..|.+.+
T Consensus 115 FeeV~YW~El~~I~dwsk~~v~Stl~iCWaAqAaLy~~yGI~K~~l~~K-lfGVf~-h~~~--~~~pL~rGfdd~f~~Ph 190 (300)
T TIGR01001 115 FEDVAYWEELTEIMEWSKHNVTSTMFICWAAQAGLKYFYGIPKYTLPEK-LSGVYK-HDIA--PDSLLLRGFDDFFLAPH 190 (300)
T ss_pred cccCCcHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHcCCCccccCCc-eEEeec-CccC--CCCccccCCCCccccCC
Confidence 2 33444 223333 2356899999999999 555667655555532 244322 1111 36899999999998888
Q ss_pred eeceeeeccCCCC-CCeEEEEEcCCCceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHHHHH
Q 027062 156 YHSLVIEKESFPS-DALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVR 221 (229)
Q Consensus 156 ~H~~~v~~~~l~~-~~~~~la~~~~~~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~~~~ 221 (229)
+..-.++.+.+.. ++++++|.|+..-+..+..++++ -+=++.|||+. ...+.+.+.+.+.+
T Consensus 191 SR~t~i~~~~i~~~~~L~vla~s~e~G~~l~~s~d~r-~vfi~GH~EYd----~~TL~~EY~RD~~~ 252 (300)
T TIGR01001 191 SRYADFDAEDIDKVTDLEILAESDEAGVYLAANKDER-NIFVTGHPEYD----AYTLHQEYVRDIGR 252 (300)
T ss_pred CCCCCCCHHHHhcCCCCeEEecCCCcceEEEEcCCCC-EEEEcCCCccC----hhHHHHHHHHHHHC
Confidence 7766676544432 68999999987767777777765 56699999994 55677777777653
No 94
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=99.14 E-value=5.7e-11 Score=92.42 Aligned_cols=135 Identities=15% Similarity=0.187 Sum_probs=85.9
Q ss_pred hHHHHHHHHHcCC--EEEEEeCCc---------------cCHHHHhccCCCEEEECCCCCCCCCc---chH--HHHHHH-
Q 027062 37 TYNLCQYMGELGY--HFEVYRNDE---------------LTVEELKRKNPRGVLISPGPGAPQDS---GIS--LQTVLE- 93 (229)
Q Consensus 37 ~~~~~~~l~~~g~--~~~v~~~~~---------------~~~~~l~~~~~dgiii~GG~~~~~~~---~~~--~~~i~~- 93 (229)
...+.+.|..... ++..+.... .+.++++..+|||+||||.|-...+. ..| +..+.+
T Consensus 14 E~qf~rlL~~~~~qv~v~~~~~~~h~~~~~~~~~l~~~Y~~~~~i~~~~yDGlIITGApve~~~fe~v~Yw~El~~i~dw 93 (175)
T cd03131 14 ERQFLRLLGNTPLQVEITFIRPSSHSSKNTPPEHVNRFYETFDDIRDAKFDGLIVTGAPVEHLPFEQVDYWEELTEILDW 93 (175)
T ss_pred HHHHHHHHhcCCccceEEEEecCCCCCCCCCHHHHHHhccCHHHccccCCCEEEEeCCCcccCCccccchHHHHHHHHHH
Confidence 3557777765544 444443221 11223445589999999998754322 233 222222
Q ss_pred -hCCCCcEEEEehhHHHHHHHhCCee-eecCCccccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccCC-CCCC
Q 027062 94 -LGPTVPLFGVCMGLQCIGEAFGGKI-VRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESF-PSDA 170 (229)
Q Consensus 94 -~~~~~PvlGIC~G~Qlla~alGg~v-~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l-~~~~ 170 (229)
..+.+|+||||+|+|+...+++|.. ...+.+. .|... .... ..++|+++++..|.+.++|...|+.+.+ ..++
T Consensus 94 a~~~v~stl~iCWgaqaal~~~yGi~k~~~~~K~-~Gvf~-~~~~--~~hpL~~g~~d~F~~PhSR~~~v~~~~~~~~~~ 169 (175)
T cd03131 94 AKTHVTSTLFSCWAAMAALYYFYGIKKHQLPEKI-FGVFP-HTIL--EPHPLLRGLDDGFDVPHSRYAEVDREDIEEAAG 169 (175)
T ss_pred HHHhCcchHHHHHHHHHHHHHHcCcccccCCCce-EEEEE-eeec--CCCccccCCCCceeecCcccccCCHHHHhhCCC
Confidence 2467999999999999999999986 5555433 44322 1121 2689999999999999999988875443 2355
Q ss_pred eEEEE
Q 027062 171 LEVTA 175 (229)
Q Consensus 171 ~~~la 175 (229)
+++++
T Consensus 170 l~il~ 174 (175)
T cd03131 170 LTILA 174 (175)
T ss_pred CEEcc
Confidence 66554
No 95
>PHA03366 FGAM-synthase; Provisional
Probab=99.13 E-value=2.8e-09 Score=105.01 Aligned_cols=198 Identities=13% Similarity=0.129 Sum_probs=120.0
Q ss_pred CCCceEEEEECCCch-hHHHHHHHHHcCCEEEEEeCCccCHHH-HhccCCCEEEECCCCCCCCC--cc-hH---------
Q 027062 22 NNKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEE-LKRKNPRGVLISPGPGAPQD--SG-IS--------- 87 (229)
Q Consensus 22 ~~~~~ilvid~~~~~-~~~~~~~l~~~g~~~~v~~~~~~~~~~-l~~~~~dgiii~GG~~~~~~--~~-~~--------- 87 (229)
..+.||+|+.+.+.. ......++..+|+++..+...+..... |+ +|+||+++||.+.-.. .+ .|
T Consensus 1026 ~~~prVaIl~~pG~N~~~e~~~Af~~aGf~~~~v~~~dL~~~~~l~--~f~glv~~GGFS~gD~l~~~~~~a~~il~n~~ 1103 (1304)
T PHA03366 1026 DKRHRVAVLLLPGCPGPHALLAAFTNAGFDPYPVSIEELKDGTFLD--EFSGLVIGGSSGAEDSYTGARAAVAALLSNPA 1103 (1304)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHcCCceEEEEeecCCCCCccc--cceEEEEcCCCCCcccccHHHHHHHHhhhchH
Confidence 457899999987775 567889999999999888764432222 44 6799999999764322 21 12
Q ss_pred -HHHHHH-h-CCCCcEEEEeh-hHHHHHHH--hC-----------------CeeeecCCccccCccceeEeccCCCCccc
Q 027062 88 -LQTVLE-L-GPTVPLFGVCM-GLQCIGEA--FG-----------------GKIVRSPLGVMHGKSSLVYYDEKGEDGLL 144 (229)
Q Consensus 88 -~~~i~~-~-~~~~PvlGIC~-G~Qlla~a--lG-----------------g~v~~~~~~~~~g~~~~~~~~~~~~~~l~ 144 (229)
.+.+.+ + .++.++||||. |+|+|+.. +| .++.++..+.+...|..+.+....++.+|
T Consensus 1104 ~~~~~~~f~~r~dt~~LGiCN~G~Q~L~~lgll~~~~~~~~p~g~i~~~~~~~l~~N~s~rfesr~~~v~i~~~s~Si~l 1183 (1304)
T PHA03366 1104 VRDALLRFLNRPDTFSLGCGELGCQILFALKAVGSTAPSPVPGTETEEQWPITLEPNASGLYESRWLNFYIPETTKSVAL 1183 (1304)
T ss_pred HHHHHHHHHhCCCCeEEEeCcHHHHHHHHcCCccCCccccccccccccCCCCeEeeeCCCCeEeeceEEEeCCCCCCccc
Confidence 122333 2 35899999998 99999884 32 34555555566666766666553456667
Q ss_pred ccCCC-ceeeeeeecee---eecc----CCCCCCeEEEEE----------------cCC--CceEEEEeCCCCcEEEEec
Q 027062 145 AGLSN-PFTAGRYHSLV---IEKE----SFPSDALEVTAW----------------TED--GLIMAARHKKYKHLQGVQF 198 (229)
Q Consensus 145 ~~l~~-~~~~~~~H~~~---v~~~----~l~~~~~~~la~----------------~~~--~~i~a~~~~~~~~i~g~Qf 198 (229)
+++.. .+.++..|... +..+ .+..++...+-+ +++ ..|+++...+++ ++|+++
T Consensus 1184 ~~~~Gs~lP~w~~g~~~~~~~~~~~~~~~l~~~~~ia~~Y~d~~~~~g~~t~~yP~NPNGS~~IaGi~s~dGR-~l~mMp 1262 (1304)
T PHA03366 1184 RPLRGSVLPCWAQGTHLGFRYPNDGMEYILRNSGQIAATFHGADVDPGNPARHYPRNPTGNSNVAGLCSADGR-HLALLF 1262 (1304)
T ss_pred cccCCCCCCEEeCCCccccccCCHHHHHHHHhCCcEEEEEeCCCCCcCccccCCCCCCCcCcceeeEECCCCC-EEEecC
Confidence 66542 23333222220 1110 111122221111 122 368999999987 999999
Q ss_pred cCCCCC---------CCc-------hHHHHHHHHHHHHHH
Q 027062 199 HPESII---------TTE-------GKTIVRNFIKMIVRK 222 (229)
Q Consensus 199 HPE~~~---------~~~-------~~~i~~~f~~~~~~~ 222 (229)
||||.. .+. ..++|+|-..++.++
T Consensus 1263 hPer~~~~~q~~~~P~~~~~~~~sPW~~mF~na~~W~~~~ 1302 (1304)
T PHA03366 1263 DPSLSFHPWQWQHVPPENGPLKVSPWKLMFQDLHLWCLKH 1302 (1304)
T ss_pred CHHHhhhhhhCCCCCcccCCCCCChHHHHHHHHHHHHHhh
Confidence 999962 111 256677766666643
No 96
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=99.06 E-value=3.7e-09 Score=103.66 Aligned_cols=178 Identities=12% Similarity=0.149 Sum_probs=108.5
Q ss_pred CCCceEEEEECCCch-hHHHHHHHHHcCCEEEEEeCCccCH-HHHhccCCCEEEECCCCCCCC--Ccch-HH--------
Q 027062 22 NNKNPIIVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTV-EELKRKNPRGVLISPGPGAPQ--DSGI-SL-------- 88 (229)
Q Consensus 22 ~~~~~ilvid~~~~~-~~~~~~~l~~~g~~~~v~~~~~~~~-~~l~~~~~dgiii~GG~~~~~--~~~~-~~-------- 88 (229)
..+.||+|+-+.+.. ......+++.+|+++..+...+... ..++ +++||+++||.+.-. ..+. |.
T Consensus 927 ~~~p~VaIl~~pG~N~~~e~~~Af~~aGf~~~~v~~~dl~~~~~l~--~f~glv~~Ggfsy~D~lgsg~~~a~~il~n~~ 1004 (1202)
T TIGR01739 927 DPRHQVAVLLLPGQSVPHGLLAALTNAGFDPRIVSITELKKTDFLD--TFSGLIIGGASGTLDSEVGARALAAALLRNQA 1004 (1202)
T ss_pred CCCCeEEEEeCCCCCCHHHHHHHHHHcCCceEEEEeccCCCCCchh--heEEEEEcCcCCCCccchHHHHHHHHhhcchH
Confidence 347789999987774 5678899999999988887544221 2233 679999988865322 2222 22
Q ss_pred --HHHHH-h-CCCCcEEEEeh-hHHHHHHH--hC-----------------CeeeecCCccccCccceeEeccCCCCccc
Q 027062 89 --QTVLE-L-GPTVPLFGVCM-GLQCIGEA--FG-----------------GKIVRSPLGVMHGKSSLVYYDEKGEDGLL 144 (229)
Q Consensus 89 --~~i~~-~-~~~~PvlGIC~-G~Qlla~a--lG-----------------g~v~~~~~~~~~g~~~~~~~~~~~~~~l~ 144 (229)
+.+.+ + .++.++||||. |+|+|+.. ++ .++.++..+.+...|..+.+....++.+|
T Consensus 1005 ~~~~~~~f~~r~dtf~LGiCN~G~Q~L~~lg~l~~~~~~~~~~~~~~~~~~~~l~~N~s~~fesr~~~v~i~~~s~si~~ 1084 (1202)
T TIGR01739 1005 FLRDLLTFLNRPDTFSLGFGELGCQLLLALNIVGYTQSSPFITVPTEVQEPPRLEKNASGLYESRWLNFYIPETTKSVFL 1084 (1202)
T ss_pred HHHHHHHHHhCCCceEEEeCcHHHHHHHHcCCCcCCcccccccccccccCCceeeecCCCCeEEeeeEEEeCCCCCChhh
Confidence 22222 2 45899999998 99999984 21 12333444555666666666543466677
Q ss_pred ccCCCc-eeeeeeece----eeecc----CCCCCCeEEEEE----------------cCC--CceEEEEeCCCCcEEEEe
Q 027062 145 AGLSNP-FTAGRYHSL----VIEKE----SFPSDALEVTAW----------------TED--GLIMAARHKKYKHLQGVQ 197 (229)
Q Consensus 145 ~~l~~~-~~~~~~H~~----~v~~~----~l~~~~~~~la~----------------~~~--~~i~a~~~~~~~~i~g~Q 197 (229)
+++... +.++. |+. .+..+ .+..++...+-+ +++ ..|+++...+++ ++|++
T Consensus 1085 ~~~~g~~lp~wv-~g~~~g~~~~~~~~~~~l~~~g~va~~Y~d~~~~~g~~a~~yP~NPNGS~~IAGi~s~dGR-~l~lM 1162 (1202)
T TIGR01739 1085 RPLRGSVLPCWA-QGTHLGLYHPDDGVEEELENSGQIASTFHGNSPSSGLPATNYPRNPSGGSNVAGLCSADGR-HLALL 1162 (1202)
T ss_pred hhcCCCEeccce-EeccCCcEECCHHHHHHHHhCCeEEEEEeCCCCCCCccccCCCCCCCcCcceeeEECCCCC-EEEec
Confidence 766532 22332 322 12111 122223222222 122 268999999987 99999
Q ss_pred ccCCCC
Q 027062 198 FHPESI 203 (229)
Q Consensus 198 fHPE~~ 203 (229)
+|||+.
T Consensus 1163 phPer~ 1168 (1202)
T TIGR01739 1163 IDPSLS 1168 (1202)
T ss_pred CCHHHh
Confidence 999996
No 97
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=98.95 E-value=2e-09 Score=85.66 Aligned_cols=83 Identities=20% Similarity=0.195 Sum_probs=59.1
Q ss_pred EEEEECC-CchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCc-----chHHHHHHH-hCCCCc
Q 027062 27 IIVIDNY-DSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-----GISLQTVLE-LGPTVP 99 (229)
Q Consensus 27 ilvid~~-~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~-----~~~~~~i~~-~~~~~P 99 (229)
|+|++.. .+...++.++++..|+++++++... ++. ++|+|+|+||.....+. ..+.+.+++ .++++|
T Consensus 1 ~~~~~y~~~gN~~~l~~~~~~~G~~~~~~~~~~----~~~--~~d~lilpGg~~~~~~~~~~~~~~~~~~i~~~~~~g~p 74 (194)
T cd01750 1 IAVIRYPDISNFTDLDPLAREPGVDVRYVEVPE----GLG--DADLIILPGSKDTIQDLAWLRKRGLAEAIKNYARAGGP 74 (194)
T ss_pred CEeecCCCccCHHHHHHHHhcCCceEEEEeCCC----CCC--CCCEEEECCCcchHHHHHHHHHcCHHHHHHHHHHCCCc
Confidence 4677764 4467889999999999999998642 233 57999999997332111 112334443 457899
Q ss_pred EEEEehhHHHHHHHhC
Q 027062 100 LFGVCMGLQCIGEAFG 115 (229)
Q Consensus 100 vlGIC~G~Qlla~alG 115 (229)
|||||.|+|+|++.+.
T Consensus 75 vlgiC~G~qlL~~~~~ 90 (194)
T cd01750 75 VLGICGGYQMLGKYIV 90 (194)
T ss_pred EEEECHHHHHhhhhcc
Confidence 9999999999999874
No 98
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.92 E-value=3.3e-08 Score=88.43 Aligned_cols=79 Identities=18% Similarity=0.328 Sum_probs=50.4
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCC-EEEEEeCCccCHHHHhccCCCEEEECCCCCCCC-Cc-chHHHHHHHhCCCCcEE
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGY-HFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DS-GISLQTVLELGPTVPLF 101 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~-~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~-~~-~~~~~~i~~~~~~~Pvl 101 (229)
|+|-|+.-. +..++++.+|. .+.+++.+ ..+++. ++|+|||+||..... +- ..+.+.+++. ++|||
T Consensus 1 m~iGvlal~-----sv~~al~~lg~~~~~vv~~~--~~~~l~--~~D~lILPGG~~~~~~~l~~~l~~~i~~~--g~pvl 69 (476)
T PRK06278 1 MEIGLLDIK-----GSLPCFENFGNLPTKIIDEN--NIKEIK--DLDGLIIPGGSLVESGSLTDELKKEILNF--DGYII 69 (476)
T ss_pred CEEEEEehh-----hHHHHHHHhcCCCcEEEEeC--ChHHhc--cCCEEEECCCchhhcchHHHHHHHHHHHc--CCeEE
Confidence 468888764 33455666665 55554433 245665 679999999842211 11 1233444445 79999
Q ss_pred EEehhHHHHHHHh
Q 027062 102 GVCMGLQCIGEAF 114 (229)
Q Consensus 102 GIC~G~Qlla~al 114 (229)
|||.|||+|++..
T Consensus 70 GICgG~QmLg~~~ 82 (476)
T PRK06278 70 GICSGFQILSEKI 82 (476)
T ss_pred EEcHHHHhccccc
Confidence 9999999999875
No 99
>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]
Probab=98.85 E-value=8.6e-08 Score=72.62 Aligned_cols=92 Identities=15% Similarity=0.255 Sum_probs=54.3
Q ss_pred ccCCCce-EEEEECCCchhHH---HHHHHHHc--CCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCC----CcchHHH
Q 027062 20 SKNNKNP-IIVIDNYDSFTYN---LCQYMGEL--GYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ----DSGISLQ 89 (229)
Q Consensus 20 ~~~~~~~-ilvid~~~~~~~~---~~~~l~~~--g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~----~~~~~~~ 89 (229)
|..+++. |-|+-..+.|... +.+.+-+. ++.+++.+.. +.+++. ++||+||+||....- .....-+
T Consensus 6 M~GKtn~VIGVLALQGAFiEH~N~~~~c~~en~y~Ik~~~~tVK--T~~D~a--q~DaLIIPGGEST~mslia~~tgL~d 81 (226)
T KOG3210|consen 6 MTGKTNVVIGVLALQGAFIEHVNHVEKCIVENRYEIKLSVMTVK--TKNDLA--QCDALIIPGGESTAMSLIAERTGLYD 81 (226)
T ss_pred ccCCcceEEeeeehhhHHHHHHHHHHHhhccCcceEEEEEEeec--CHHHHh--hCCEEEecCCchhHHHHHHhhhhhHH
Confidence 3334433 5666655566543 23333333 5555566543 456766 789999999976431 1111233
Q ss_pred HHHHh--CCCCcEEEEehhHHHHHHHhC
Q 027062 90 TVLEL--GPTVPLFGVCMGLQCIGEAFG 115 (229)
Q Consensus 90 ~i~~~--~~~~PvlGIC~G~Qlla~alG 115 (229)
.+.++ ...+|+||.|.||-+|+.-+-
T Consensus 82 ~L~~fVhn~~k~~WGTCAGmI~LS~ql~ 109 (226)
T KOG3210|consen 82 DLYAFVHNPSKVTWGTCAGMIYLSQQLS 109 (226)
T ss_pred HHHHHhcCCCccceeechhhhhhhhhhc
Confidence 34443 345999999999999987543
No 100
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=98.82 E-value=1.7e-07 Score=74.84 Aligned_cols=73 Identities=16% Similarity=0.255 Sum_probs=48.5
Q ss_pred HHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCC-----CcchHHHHHHH-hCCCCcEEEEehhHHHHH
Q 027062 38 YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-----DSGISLQTVLE-LGPTVPLFGVCMGLQCIG 111 (229)
Q Consensus 38 ~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~-----~~~~~~~~i~~-~~~~~PvlGIC~G~Qlla 111 (229)
..-.++|+++|+++.++..- ..+++. ++|+|||+||..... ....+.+.+++ ..+++||+|||.|+|+|+
T Consensus 14 ~e~~~~l~~~G~~v~~~s~~--~~~~l~--~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~g~pilgICgG~qlL~ 89 (198)
T cd03130 14 PENLELLEAAGAELVPFSPL--KDEELP--DADGLYLGGGYPELFAEELSANQSMRESIRAFAESGGPIYAECGGLMYLG 89 (198)
T ss_pred HHHHHHHHHCCCEEEEECCC--CCCCCC--CCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHcCCCEEEEcccHHHHH
Confidence 34456788999999887642 012333 479999999853321 11113344444 356899999999999999
Q ss_pred HHh
Q 027062 112 EAF 114 (229)
Q Consensus 112 ~al 114 (229)
+.+
T Consensus 90 ~~~ 92 (198)
T cd03130 90 ESL 92 (198)
T ss_pred HHh
Confidence 875
No 101
>PRK00784 cobyric acid synthase; Provisional
Probab=98.57 E-value=1.4e-06 Score=78.87 Aligned_cols=84 Identities=18% Similarity=0.191 Sum_probs=56.9
Q ss_pred CceEEEEECCCc-hhHHHHHHHHH-cCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcch-----HHHHHHH-hC
Q 027062 24 KNPIIVIDNYDS-FTYNLCQYMGE-LGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI-----SLQTVLE-LG 95 (229)
Q Consensus 24 ~~~ilvid~~~~-~~~~~~~~l~~-~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~-----~~~~i~~-~~ 95 (229)
+.+|.|+..... ...++ +.|++ .|++++++... +++. ++|+|+|+||......... +.+.+++ .+
T Consensus 251 ~~~i~v~~~~~a~~f~nl-~~l~~~~g~~v~~~s~~----~~l~--~~d~lilpGg~~~~~~~~~~~~~~l~~~i~~~~~ 323 (488)
T PRK00784 251 ALRIAVIRLPRISNFTDF-DPLRAEPGVDVRYVRPG----EPLP--DADLVILPGSKNTIADLAWLRESGWDEAIRAHAR 323 (488)
T ss_pred ceEEEEEeCCCcCCccCh-HHHhhcCCCeEEEECCc----cccc--cCCEEEECCccchHHHHHHHHHcCHHHHHHHHHH
Confidence 458999983212 22455 45665 89999888642 3454 6799999999854332111 2344544 45
Q ss_pred CCCcEEEEehhHHHHHHHh
Q 027062 96 PTVPLFGVCMGLQCIGEAF 114 (229)
Q Consensus 96 ~~~PvlGIC~G~Qlla~al 114 (229)
.++|+||||.|+|+|+..+
T Consensus 324 ~g~pilg~C~G~~~L~~~~ 342 (488)
T PRK00784 324 RGGPVLGICGGYQMLGRRI 342 (488)
T ss_pred cCCeEEEECHHHHHHhhhc
Confidence 7899999999999999987
No 102
>COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism]
Probab=98.50 E-value=5.1e-06 Score=67.23 Aligned_cols=195 Identities=18% Similarity=0.215 Sum_probs=116.5
Q ss_pred cccccCC-CceEEEEECCCch--h-HHHHHHHHHcCCEEE--EEeCCc---------------cCHHHHhccCCCEEEEC
Q 027062 17 DKKSKNN-KNPIIVIDNYDSF--T-YNLCQYMGELGYHFE--VYRNDE---------------LTVEELKRKNPRGVLIS 75 (229)
Q Consensus 17 ~~~~~~~-~~~ilvid~~~~~--~-~~~~~~l~~~g~~~~--v~~~~~---------------~~~~~l~~~~~dgiii~ 75 (229)
++..+.. ..+|+|++.-..- + .-+.+.|...-.+|. .++.+. .+.+++++.+|||+||+
T Consensus 27 rA~~QdIRPL~IlilNLMP~Ki~TE~Q~lRLL~nsPLQV~itll~~~sh~~KnTp~eHl~~FY~tfeeVk~~~FDG~IiT 106 (307)
T COG1897 27 RAKHQDIRPLKILILNLMPKKIETETQILRLLGNSPLQVDITLLRIDSHESKNTPAEHLNSFYCTFEEVKDQKFDGLIIT 106 (307)
T ss_pred hhhhcCCccceeeeeecCchhHHHHHHHHHHhcCCCceEEEEEEEecCcCCCCCcHHHHHHHhhcHHHHhhcccCceEEe
Confidence 3344554 4689999864332 2 235666665545544 333221 23556777789999999
Q ss_pred CCCCCC--C-CcchH--HHHHHHh--CCCCcEEEEehhHHHHHHH-hCCeeeecCCccccCccceeEeccCCCCcccccC
Q 027062 76 PGPGAP--Q-DSGIS--LQTVLEL--GPTVPLFGVCMGLQCIGEA-FGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGL 147 (229)
Q Consensus 76 GG~~~~--~-~~~~~--~~~i~~~--~~~~PvlGIC~G~Qlla~a-lGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l 147 (229)
|.|--. . +...| +..|.++ .+---.|-||+|.|..-.+ +|-.=...+. ...|... .... ...+.|+.|+
T Consensus 107 GAPve~l~feeV~YW~el~~I~eWskt~V~STl~ICWgaqAaly~~yGv~K~~l~~-Kl~GVy~-h~~l-~p~~~l~rGf 183 (307)
T COG1897 107 GAPVELLPFEEVAYWEELKQIFEWSKTHVTSTLHICWGAQAALYYFYGVPKYTLPE-KLSGVYK-HDIL-SPHSLLTRGF 183 (307)
T ss_pred CCcccccCchhhhhHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHcCCCccccch-hhhceee-cccc-CccchhhccC
Confidence 998643 2 33444 2333332 2335689999999987665 4443333332 1233322 1111 2357799999
Q ss_pred CCceeeeeeeceeeeccCC-CCCCeEEEEEcCCCceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHHH
Q 027062 148 SNPFTAGRYHSLVIEKESF-PSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI 219 (229)
Q Consensus 148 ~~~~~~~~~H~~~v~~~~l-~~~~~~~la~~~~~~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~~ 219 (229)
.+.|.+.++..-.+.++.+ .-+++++++.|+..-+..+..++++ -.=+-.|||+. ...+-..+.+..
T Consensus 184 dd~f~~PhSR~t~~~~e~i~~~~~LeIL~es~e~G~~l~a~k~~r-~ifv~gH~EYD----~~tL~~EY~RD~ 251 (307)
T COG1897 184 DDSFLAPHSRYTDVPKEDILAVPDLEILAESKEAGVYLLASKDGR-NIFVTGHPEYD----ATTLAQEYFRDV 251 (307)
T ss_pred CccccCcccccccCCHHHHhhCCCceeeecccccceEEEecCCCC-eEEEeCCcchh----hhHHHHHHHhhh
Confidence 9999888777666655433 1256899999987766677777776 56677899995 334444444444
No 103
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.46 E-value=1.8e-05 Score=71.04 Aligned_cols=87 Identities=16% Similarity=0.210 Sum_probs=57.0
Q ss_pred CceEEEEECC-Cchh-HHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCC-----CcchHHHHHHH-hC
Q 027062 24 KNPIIVIDNY-DSFT-YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-----DSGISLQTVLE-LG 95 (229)
Q Consensus 24 ~~~ilvid~~-~~~~-~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~-----~~~~~~~~i~~-~~ 95 (229)
+.+|+|+-.. .+|. ..-.+.|++.|+++..+..- ..+++. ++|+|+|+||....+ ....+.+.+++ ..
T Consensus 245 ~~~iava~d~af~f~y~e~~~~L~~~g~~~~~~~~~--~~~~l~--~~D~lilpGG~~~~~~~~l~~~~~~~~~i~~~~~ 320 (451)
T PRK01077 245 GVRIAVARDAAFNFYYPENLELLRAAGAELVFFSPL--ADEALP--DCDGLYLGGGYPELFAAELAANTSMRASIRAAAA 320 (451)
T ss_pred CceEEEEecCcccccHHHHHHHHHHCCCEEEEeCCc--CCCCCC--CCCEEEeCCCchhhHHHHHhhCchhHHHHHHHHH
Confidence 3589888543 1221 22346688899999887642 112343 679999999964322 11223455554 35
Q ss_pred CCCcEEEEehhHHHHHHHh
Q 027062 96 PTVPLFGVCMGLQCIGEAF 114 (229)
Q Consensus 96 ~~~PvlGIC~G~Qlla~al 114 (229)
+++||+|||.|+|+|+..+
T Consensus 321 ~g~~i~aiCgG~~~L~~~i 339 (451)
T PRK01077 321 AGKPIYAECGGLMYLGESL 339 (451)
T ss_pred cCCCEEEEcHHHHHHHhhh
Confidence 7899999999999999987
No 104
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=98.36 E-value=1.1e-05 Score=72.32 Aligned_cols=87 Identities=15% Similarity=0.193 Sum_probs=56.5
Q ss_pred CceEEEEECCC-ch-hHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc-----hHHHHHHH-hC
Q 027062 24 KNPIIVIDNYD-SF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-----ISLQTVLE-LG 95 (229)
Q Consensus 24 ~~~ilvid~~~-~~-~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~-----~~~~~i~~-~~ 95 (229)
+.+|+|+.... +| ...=.+.|++.|+++..+..- ..+++. ++|+|+|+||.....+.. .+.+.+++ ..
T Consensus 244 ~~~Iava~d~afnFy~~~~~~~L~~~g~~~~~~~~~--~d~~l~--~~d~l~ipGG~~~~~~~~l~~~~~~~~~i~~~~~ 319 (449)
T TIGR00379 244 YVRIAVAQDQAFNFYYQDNLDALTHNAAELVPFSPL--EDTELP--DVDAVYIGGGFPELFAEELSQNQALRDSIKTFIH 319 (449)
T ss_pred CcEEEEEechhhceeHHHHHHHHHHCCCEEEEECCc--cCCCCC--CCCEEEeCCcHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 36898885421 11 123335688899999887642 012343 679999999974332211 12344544 35
Q ss_pred CCCcEEEEehhHHHHHHHh
Q 027062 96 PTVPLFGVCMGLQCIGEAF 114 (229)
Q Consensus 96 ~~~PvlGIC~G~Qlla~al 114 (229)
++.||+|+|.|+|+|++.+
T Consensus 320 ~G~pv~g~CgG~~~L~~~i 338 (449)
T TIGR00379 320 QGLPIYGECGGLMYLSQSL 338 (449)
T ss_pred cCCCEEEEcHHHHHHHhhh
Confidence 7899999999999999987
No 105
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=98.35 E-value=2.4e-06 Score=59.86 Aligned_cols=73 Identities=26% Similarity=0.470 Sum_probs=52.2
Q ss_pred HHHHHHHHHcCCEEEEEeCCccCHHH-HhccCCCEEEECCCCCCCCCc---chHHHHHHH-hCCCCcEEEEehhHHHH
Q 027062 38 YNLCQYMGELGYHFEVYRNDELTVEE-LKRKNPRGVLISPGPGAPQDS---GISLQTVLE-LGPTVPLFGVCMGLQCI 110 (229)
Q Consensus 38 ~~~~~~l~~~g~~~~v~~~~~~~~~~-l~~~~~dgiii~GG~~~~~~~---~~~~~~i~~-~~~~~PvlGIC~G~Qll 110 (229)
..+.+.++..++++.+++........ ....++|+++++||....... ...++.+.+ .++++|++|+|.|+|++
T Consensus 15 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lii~g~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~c~g~~~l 92 (115)
T cd01653 15 ASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLARDEALLALLREAAAAGKPILGICLGAQLL 92 (115)
T ss_pred HHHHHHHHHCCCeEEEEcCCCCceeccCChhccCEEEECCCCCchhhhccCHHHHHHHHHHHHcCCEEEEECchhHhH
Confidence 56778899999999998865332110 011268999999998776543 444555554 45679999999999999
No 106
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=98.22 E-value=1.8e-05 Score=63.99 Aligned_cols=75 Identities=12% Similarity=0.137 Sum_probs=50.9
Q ss_pred HHHHHHHcCCEEEEEeCCc--------------------------------cCHHHHhccCCCEEEECCCCCCCC---C-
Q 027062 40 LCQYMGELGYHFEVYRNDE--------------------------------LTVEELKRKNPRGVLISPGPGAPQ---D- 83 (229)
Q Consensus 40 ~~~~l~~~g~~~~v~~~~~--------------------------------~~~~~l~~~~~dgiii~GG~~~~~---~- 83 (229)
....|+++|+++.+..... ...+++...+||+|+|+||.+... +
T Consensus 25 P~~~L~~aG~~V~~aSp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~~~dyDalviPGG~g~~~~l~d~ 104 (217)
T PRK11780 25 TLLALDRAGAEAVCFAPDIPQLHVINHLTGEEMGETRNVLVESARIARGEIKDLAEADAEDFDALIVPGGFGAAKNLSNF 104 (217)
T ss_pred HHHHHHHCCCEEEEEeCCCCccccccCccccccccccceeeehhhhhccCCCchhHCChhhCCEEEECCCCchhhhhhhh
Confidence 4677899999998764311 112233333799999999965321 1
Q ss_pred ---------cchHHHHHHH-hCCCCcEEEEehhHHHHHHHh
Q 027062 84 ---------SGISLQTVLE-LGPTVPLFGVCMGLQCIGEAF 114 (229)
Q Consensus 84 ---------~~~~~~~i~~-~~~~~PvlGIC~G~Qlla~al 114 (229)
.....+.+++ .++++||.+||.|-++|+.++
T Consensus 105 ~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~ 145 (217)
T PRK11780 105 AVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKIL 145 (217)
T ss_pred cccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHh
Confidence 2334555554 357899999999999999876
No 107
>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]
Probab=98.19 E-value=2.9e-05 Score=72.56 Aligned_cols=178 Identities=13% Similarity=0.166 Sum_probs=103.5
Q ss_pred CCCceEEEEECCCchh-HHHHHHHHHcCCEEEEEeCCccC--HHHHhccCCCEEEECCCCCCC--CCcch-H--------
Q 027062 22 NNKNPIIVIDNYDSFT-YNLCQYMGELGYHFEVYRNDELT--VEELKRKNPRGVLISPGPGAP--QDSGI-S-------- 87 (229)
Q Consensus 22 ~~~~~ilvid~~~~~~-~~~~~~l~~~g~~~~v~~~~~~~--~~~l~~~~~dgiii~GG~~~~--~~~~~-~-------- 87 (229)
...+||+||...+..- ..+..++..+|++..-+...+.- ...++ +|-||+++||..-. -.... |
T Consensus 1056 s~~PkVAilREeGvNg~rEMa~af~~AgF~~~DVtmtDlL~G~~~ld--~frGlaf~GGFSYaDvLgSakGWAasil~ne 1133 (1320)
T KOG1907|consen 1056 STAPKVAILREEGVNGDREMAAAFYAAGFETVDVTMTDLLAGRHHLD--DFRGLAFCGGFSYADVLGSAKGWAASILFNE 1133 (1320)
T ss_pred cCCCceEEeeccccccHHHHHHHHHHcCCceeeeeeehhhcCceeHh--HhcceeeecCcchHhhhccccchhhheeeCh
Confidence 4467999998866653 55777888999987644432110 11233 57899999996522 11111 1
Q ss_pred --HHHHHHh--CCCCcEEEEehhHHHHHHH--hCCeee--------ecCCccccCccceeEeccCCCCcccccCCC-cee
Q 027062 88 --LQTVLEL--GPTVPLFGVCMGLQCIGEA--FGGKIV--------RSPLGVMHGKSSLVYYDEKGEDGLLAGLSN-PFT 152 (229)
Q Consensus 88 --~~~i~~~--~~~~PvlGIC~G~Qlla~a--lGg~v~--------~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~-~~~ 152 (229)
.....++ ....=-||||.|.|+|++. .|-.+. .+..+.+.+.+..+.+.. ..+-+++++.. .+.
T Consensus 1134 ~v~~QF~~F~~R~DtFslGiCNGCQlms~Lg~i~p~~~~~p~~~l~~Nes~rfE~r~~~vkI~~-~~SIml~gM~gs~Lg 1212 (1320)
T KOG1907|consen 1134 SVRSQFEAFFNRQDTFSLGICNGCQLMSRLGWIGPEVGKWPDVFLDHNESGRFECRFGMVKIES-NVSIMLSGMAGSVLG 1212 (1320)
T ss_pred hHHHHHHHHhcCCCceeeecccHhHHHHHhcccCccccCCCceeeecccccceeeeEEEEEeCC-CchhhhccccCCcee
Confidence 1222222 2335579999999999985 221111 333344555555555542 24556666653 456
Q ss_pred eeeeecee---eecc----CCCCCCeEEEEE-------------cCCC---ceEEEEeCCCCcEEEEeccCCCC
Q 027062 153 AGRYHSLV---IEKE----SFPSDALEVTAW-------------TEDG---LIMAARHKKYKHLQGVQFHPESI 203 (229)
Q Consensus 153 ~~~~H~~~---v~~~----~l~~~~~~~la~-------------~~~~---~i~a~~~~~~~~i~g~QfHPE~~ 203 (229)
++..|+.. +..+ .+..+++..+-+ +++| -|++++..+++ .++++.||||.
T Consensus 1213 vwvAHGEGRa~f~~e~~~e~~~~~gl~~iryvdd~g~~te~yPfNpNGS~~gIAgicSpdGR-hLAMMPHpER~ 1285 (1320)
T KOG1907|consen 1213 VWVAHGEGRATFRSEQNLEHLKKEGLVCIRYVDDYGNVTELYPFNPNGSPDGIAGICSPDGR-HLAMMPHPERV 1285 (1320)
T ss_pred eEEEecccceecCcHHHHHHHhhcCeeEEEEecCCCCEeeecccCCCCCcccceeeeCCCCC-eeeccCCchhe
Confidence 77777643 1110 123344444333 2333 38899999987 89999999996
No 108
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=98.17 E-value=1.8e-05 Score=60.91 Aligned_cols=48 Identities=19% Similarity=0.285 Sum_probs=35.9
Q ss_pred CCCEEEECCCCCCCCCcc-----hHHHHHHH-hCCCCcEEEEehhHHHHHHHhC
Q 027062 68 NPRGVLISPGPGAPQDSG-----ISLQTVLE-LGPTVPLFGVCMGLQCIGEAFG 115 (229)
Q Consensus 68 ~~dgiii~GG~~~~~~~~-----~~~~~i~~-~~~~~PvlGIC~G~Qlla~alG 115 (229)
++|+|+|+||.-..++.. .+.+.|++ .+++.||+|+|-|+|+|.+.+-
T Consensus 7 ~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~i~ 60 (158)
T PF07685_consen 7 DADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGESII 60 (158)
T ss_pred CCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHHHh
Confidence 679999999975444332 23455554 4678999999999999999874
No 109
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=98.16 E-value=7.4e-06 Score=54.79 Aligned_cols=73 Identities=26% Similarity=0.477 Sum_probs=51.1
Q ss_pred HHHHHHHHHcCCEEEEEeCCccCHH-HHhccCCCEEEECCCCCCCCCc---chHHHHHHH-hCCCCcEEEEehhHHHH
Q 027062 38 YNLCQYMGELGYHFEVYRNDELTVE-ELKRKNPRGVLISPGPGAPQDS---GISLQTVLE-LGPTVPLFGVCMGLQCI 110 (229)
Q Consensus 38 ~~~~~~l~~~g~~~~v~~~~~~~~~-~l~~~~~dgiii~GG~~~~~~~---~~~~~~i~~-~~~~~PvlGIC~G~Qll 110 (229)
..+.+.++..++.+.++........ .....++|++|++||....... ...++.+.+ ..+++|++|+|.|+|++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~ 92 (92)
T cd03128 15 ASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGAQLL 92 (92)
T ss_pred ecHHHHHHhCCCEEEEEeCCCCcccccCCcccCCEEEECCCCcchhhhccCHHHHHHHHHHHHcCCEEEEEecccccC
Confidence 4677888899999998886532211 1122378999999998876554 344555543 45679999999999874
No 110
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=98.04 E-value=0.00011 Score=65.27 Aligned_cols=83 Identities=16% Similarity=0.336 Sum_probs=54.1
Q ss_pred ceEEEEECCCc----hhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc----hHHHHHHH-hC
Q 027062 25 NPIIVIDNYDS----FTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG----ISLQTVLE-LG 95 (229)
Q Consensus 25 ~~ilvid~~~~----~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~----~~~~~i~~-~~ 95 (229)
.||+|-.- .. |..++ +.|+++ ++++.+.. ...+++. ++|+|+|+||.....+.. ...+.+++ ..
T Consensus 234 ~~iavA~D-~AF~FyY~enl-~~L~~~-aelv~fSP--l~~~~lp--~~D~l~lpGG~~e~~~~~L~~n~~~~~i~~~~~ 306 (433)
T PRK13896 234 PTVAVARD-AAFCFRYPATI-ERLRER-ADVVTFSP--VAGDPLP--DCDGVYLPGGYPELHADALADSPALDELADRAA 306 (433)
T ss_pred CeEEEEEc-CccceeCHHHH-HHHHhc-CcEEEEcC--CCCCCCC--CCCEEEeCCCchhhHHHHHHhCCcHHHHHHHHH
Confidence 58888852 12 23444 568888 77776654 1223344 679999999975433211 01244543 45
Q ss_pred CCCcEEEEehhHHHHHHHh
Q 027062 96 PTVPLFGVCMGLQCIGEAF 114 (229)
Q Consensus 96 ~~~PvlGIC~G~Qlla~al 114 (229)
++.||+|+|.|+|+|++.+
T Consensus 307 ~G~pi~aeCGG~q~L~~~i 325 (433)
T PRK13896 307 DGLPVLGECGGLMALAESL 325 (433)
T ss_pred CCCcEEEEehHHHHhhccc
Confidence 7899999999999999986
No 111
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=97.98 E-value=5.3e-05 Score=59.40 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=33.9
Q ss_pred CCCEEEECCCCCCCC--CcchHHHHHHH-hCCCCcEEEEehhHHHHHHH
Q 027062 68 NPRGVLISPGPGAPQ--DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 113 (229)
Q Consensus 68 ~~dgiii~GG~~~~~--~~~~~~~~i~~-~~~~~PvlGIC~G~Qlla~a 113 (229)
+||+|+|+||++... ......+++++ ..+++||.|||.|.++|+.+
T Consensus 76 ~~D~liv~GG~~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~~La~a 124 (180)
T cd03169 76 DYDALVIPGGRAPEYLRLDEKVLAIVRHFAEANKPVAAICHGPQILAAA 124 (180)
T ss_pred HCCEEEEcCCCChhhhccCHHHHHHHHHHHHcCCEEEEECcHHHHHHHc
Confidence 579999999975321 22344555554 45789999999999999986
No 112
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=97.96 E-value=2.1e-05 Score=63.43 Aligned_cols=90 Identities=11% Similarity=0.107 Sum_probs=59.1
Q ss_pred CCCceEEEEECCCc----hhHHHHHHHHHc-CCEEEEEeCCc--cCHHHHhccCCCEEEECCCCCCCC----CcchHHHH
Q 027062 22 NNKNPIIVIDNYDS----FTYNLCQYMGEL-GYHFEVYRNDE--LTVEELKRKNPRGVLISPGPGAPQ----DSGISLQT 90 (229)
Q Consensus 22 ~~~~~ilvid~~~~----~~~~~~~~l~~~-g~~~~v~~~~~--~~~~~l~~~~~dgiii~GG~~~~~----~~~~~~~~ 90 (229)
....+|++|-..+. +..++.++++++ |+++..+...+ ...+.+. +.|+|+++||..... ....+.+.
T Consensus 29 ~~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~--~ad~I~l~GG~~~~~~~~l~~~~l~~~ 106 (212)
T cd03146 29 KARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALL--EADVIYVGGGNTFNLLAQWREHGLDAI 106 (212)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHh--cCCEEEECCchHHHHHHHHHHcCHHHH
Confidence 35678999966433 456688889999 99988776321 1134444 569999999732110 00112333
Q ss_pred HHH-hCCCCcEEEEehhHHHHHHH
Q 027062 91 VLE-LGPTVPLFGVCMGLQCIGEA 113 (229)
Q Consensus 91 i~~-~~~~~PvlGIC~G~Qlla~a 113 (229)
+++ ..+++|++|||.|+|++...
T Consensus 107 l~~~~~~g~~i~G~SAGa~i~~~~ 130 (212)
T cd03146 107 LKAALERGVVYIGWSAGSNCWFPS 130 (212)
T ss_pred HHHHHHCCCEEEEECHhHHhhCCC
Confidence 443 45789999999999999874
No 113
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=97.90 E-value=6.3e-05 Score=60.62 Aligned_cols=76 Identities=17% Similarity=0.244 Sum_probs=50.8
Q ss_pred HHHHHHHcCCEEEEEeCCc--------------------------------cCHHHHhccCCCEEEECCCCCCC---CC-
Q 027062 40 LCQYMGELGYHFEVYRNDE--------------------------------LTVEELKRKNPRGVLISPGPGAP---QD- 83 (229)
Q Consensus 40 ~~~~l~~~g~~~~v~~~~~--------------------------------~~~~~l~~~~~dgiii~GG~~~~---~~- 83 (229)
..+.|+++|+++.+..... ...+++...+||+|+|+||.+.. .+
T Consensus 22 p~~~L~raG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ev~~~dyDalviPGG~~~~~~l~D~ 101 (213)
T cd03133 22 TLLALDRAGAEVQCFAPDIEQMHVVNHLTGEAEGESRNVLVESARIARGNIKDLAKLKAADFDALIFPGGFGAAKNLSDF 101 (213)
T ss_pred HHHHHHHCCCEEEEEeCCCCccCccccccccccccccceeeehhhhhhcCCCchHHCCHhHCCEEEECCCCchhhhhhhh
Confidence 4677888999988765310 11223222368999999996532 11
Q ss_pred ---------cchHHHHHHH-hCCCCcEEEEehhHHHHHHHhC
Q 027062 84 ---------SGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFG 115 (229)
Q Consensus 84 ---------~~~~~~~i~~-~~~~~PvlGIC~G~Qlla~alG 115 (229)
...+.+.+++ .++++||.+||.|-++|+.+.+
T Consensus 102 ~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~~ 143 (213)
T cd03133 102 AVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKILG 143 (213)
T ss_pred cccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHhc
Confidence 2234555554 4678999999999999998764
No 114
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=97.89 E-value=8.6e-05 Score=57.26 Aligned_cols=75 Identities=17% Similarity=0.274 Sum_probs=49.3
Q ss_pred HHHHHHHHcCCEEEEEeCCc--------------cCHHHHhccCCCEEEECCCCCCC--CCcchHHHHHHH-hCCCCcEE
Q 027062 39 NLCQYMGELGYHFEVYRNDE--------------LTVEELKRKNPRGVLISPGPGAP--QDSGISLQTVLE-LGPTVPLF 101 (229)
Q Consensus 39 ~~~~~l~~~g~~~~v~~~~~--------------~~~~~l~~~~~dgiii~GG~~~~--~~~~~~~~~i~~-~~~~~Pvl 101 (229)
...+.|+..|+++.++.... .+.+++...++|+|+|+||.+.. .......+++++ ..+++|+.
T Consensus 17 ~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~~~~~~~~~~~l~~~l~~~~~~~~~i~ 96 (166)
T TIGR01382 17 YPLDRLREAGHEVDTVSKEAGTTVGKHGYSVTVDATIDEVNPEEYDALVIPGGRAPEYLRLNNKAVRLVREFVEKGKPVA 96 (166)
T ss_pred HHHHHHHHCCCEEEEEecCCCceeccCCceeeccCChhhCCHHHCcEEEECCCCCHHHhccCHHHHHHHHHHHHcCCEEE
Confidence 35677888898887764321 12222222258999999996522 123345556654 35779999
Q ss_pred EEehhHHHHHHH
Q 027062 102 GVCMGLQCIGEA 113 (229)
Q Consensus 102 GIC~G~Qlla~a 113 (229)
|||.|.++|+.+
T Consensus 97 ~ic~G~~~La~a 108 (166)
T TIGR01382 97 AICHGPQLLISA 108 (166)
T ss_pred EEChHHHHHHhc
Confidence 999999999974
No 115
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=97.81 E-value=0.00016 Score=55.67 Aligned_cols=75 Identities=15% Similarity=0.158 Sum_probs=50.3
Q ss_pred HHHHHHHHcCCEEEEEeCC-cc---------------CHHHHhccCCCEEEECCCCCCC--CCcchHHHHHHH-hCCCCc
Q 027062 39 NLCQYMGELGYHFEVYRND-EL---------------TVEELKRKNPRGVLISPGPGAP--QDSGISLQTVLE-LGPTVP 99 (229)
Q Consensus 39 ~~~~~l~~~g~~~~v~~~~-~~---------------~~~~l~~~~~dgiii~GG~~~~--~~~~~~~~~i~~-~~~~~P 99 (229)
.+.+.|+..|+++.++..+ .. +.++....++|+|+|+||+... ......++++++ ..+++|
T Consensus 17 ~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~~~~~~~~~~~~~~~l~~~~~~~~~ 96 (165)
T cd03134 17 YPLYRLREAGAEVVVAGPEAGGEIQGKHGYDTVTVDLTIADVDADDYDALVIPGGTNPDKLRRDPDAVAFVRAFAEAGKP 96 (165)
T ss_pred HHHHHHHHCCCEEEEEccCCCcccccCcCceeecCCCChHHCCHHHCCEEEECCCCChhhhccCHHHHHHHHHHHHcCCe
Confidence 3567788889998887544 11 1122222257999999997422 123445666654 457899
Q ss_pred EEEEehhHHHHHHH
Q 027062 100 LFGVCMGLQCIGEA 113 (229)
Q Consensus 100 vlGIC~G~Qlla~a 113 (229)
|.|||.|.++|+.+
T Consensus 97 i~~ic~G~~~La~a 110 (165)
T cd03134 97 VAAICHGPWVLISA 110 (165)
T ss_pred EEEEchHHHHHHhc
Confidence 99999999999874
No 116
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=97.78 E-value=2.5e-05 Score=70.45 Aligned_cols=81 Identities=17% Similarity=0.204 Sum_probs=48.7
Q ss_pred ceEEEEECC--CchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc-----hHHHHHHH-hCC
Q 027062 25 NPIIVIDNY--DSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-----ISLQTVLE-LGP 96 (229)
Q Consensus 25 ~~ilvid~~--~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~-----~~~~~i~~-~~~ 96 (229)
.+|+|+... ..|. ++ +.|+... .+...+. + +++. ++|+|+|+||.....+.. .+.+.+++ ..+
T Consensus 248 ~~Iav~~~~~~~nf~-~~-~~L~~~~-~~~f~~~---~-~~l~--~~d~lilpGg~~~~~~~~~l~~~~~~~~i~~~~~~ 318 (475)
T TIGR00313 248 IRIGVVRLPRISNFT-DF-EPLRYEA-FVKFLDL---D-DSLT--GCDAVIIPGSKSTIADLYALKQSGFAEEILDFAKE 318 (475)
T ss_pred cEEEEEcCCcccCcc-Ch-HHHhhCC-CeEEeCC---c-cccc--cCCEEEECCcchHHHHHHHHHhcChHHHHHHHHHc
Confidence 688888732 2233 33 3455441 2222222 1 2444 679999999974333311 12344544 457
Q ss_pred CCcEEEEehhHHHHHHHh
Q 027062 97 TVPLFGVCMGLQCIGEAF 114 (229)
Q Consensus 97 ~~PvlGIC~G~Qlla~al 114 (229)
+.||+|||.|||+|++.+
T Consensus 319 G~pvlgiCgG~q~Lg~~i 336 (475)
T TIGR00313 319 GGIVIGICGGYQMLGKEL 336 (475)
T ss_pred CCcEEEEcHHHHHhhhhh
Confidence 899999999999999975
No 117
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=97.72 E-value=0.00024 Score=53.39 Aligned_cols=89 Identities=18% Similarity=0.081 Sum_probs=57.2
Q ss_pred ceEEEEECCCch---hHHHHHHHHHcCCEEEEEeCCcc--------------CHHHHhccCCCEEEECCCCCCC---CCc
Q 027062 25 NPIIVIDNYDSF---TYNLCQYMGELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP---QDS 84 (229)
Q Consensus 25 ~~ilvid~~~~~---~~~~~~~l~~~g~~~~v~~~~~~--------------~~~~l~~~~~dgiii~GG~~~~---~~~ 84 (229)
++|+|+-..+.. ...+.+.++.+|+++.++..+.. +.++....+||+|+|+||.+.. ...
T Consensus 2 ~~v~ill~~g~~~~e~~~~~~~~~~a~~~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~~~~~~ 81 (142)
T cd03132 2 RKVGILVADGVDAAELSALKAALKAAGANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAFALAPS 81 (142)
T ss_pred CEEEEEEcCCcCHHHHHHHHHHHHHCCCEEEEEecCcCceecCCCcEEecceeecCCChhhcCEEEECCCccCHHHHccC
Confidence 456666542221 23467788889999988754311 1112222258999999997643 233
Q ss_pred chHHHHHHH-hCCCCcEEEEehhHHHHHHH
Q 027062 85 GISLQTVLE-LGPTVPLFGVCMGLQCIGEA 113 (229)
Q Consensus 85 ~~~~~~i~~-~~~~~PvlGIC~G~Qlla~a 113 (229)
....+++++ ..+++||.+||-|..+|+.+
T Consensus 82 ~~l~~~l~~~~~~~~~I~aic~G~~~La~a 111 (142)
T cd03132 82 GRALHFVTEAFKHGKPIGAVGEGSDLLEAA 111 (142)
T ss_pred hHHHHHHHHHHhcCCeEEEcCchHHHHHHc
Confidence 455666665 45789999999999999984
No 118
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=97.66 E-value=0.0001 Score=65.48 Aligned_cols=84 Identities=19% Similarity=0.251 Sum_probs=51.4
Q ss_pred CCceEEEEECC--CchhHHHHHHHHH-cCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcch-----HHHHHHH-
Q 027062 23 NKNPIIVIDNY--DSFTYNLCQYMGE-LGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI-----SLQTVLE- 93 (229)
Q Consensus 23 ~~~~ilvid~~--~~~~~~~~~~l~~-~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~-----~~~~i~~- 93 (229)
...+|+|+... +.|+ -...|+. .++++.+++.. +++. ++|.+||+|.-....|-.. +.+.+.+
T Consensus 250 ~~i~Iav~~lp~isNFt--D~dpL~~~~~v~v~~v~~~----~~l~--~~dlvIlPGsk~t~~DL~~lr~~g~d~~i~~~ 321 (486)
T COG1492 250 RAIRIAVIRLPRISNFT--DFDPLRAEPDVRVRFVKPG----SDLR--DADLVILPGSKNTIADLKILREGGMDEKILEY 321 (486)
T ss_pred CceEEEEecCCCccccc--cchhhhcCCCeEEEEeccC----CCCC--CCCEEEeCCCcccHHHHHHHHHcCHHHHHHHH
Confidence 34578888653 2222 1233443 47888887753 3343 4688888876554433221 2344444
Q ss_pred hCCCCcEEEEehhHHHHHHHh
Q 027062 94 LGPTVPLFGVCMGLQCIGEAF 114 (229)
Q Consensus 94 ~~~~~PvlGIC~G~Qlla~al 114 (229)
...+.||+|||-|+|+|...+
T Consensus 322 ~~~~~~viGICGG~QmLG~~i 342 (486)
T COG1492 322 ARKGGDVIGICGGYQMLGRRL 342 (486)
T ss_pred HhCCCCEEEEcchHHhhhhhh
Confidence 345899999999999997753
No 119
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=97.62 E-value=0.00031 Score=57.40 Aligned_cols=47 Identities=11% Similarity=0.106 Sum_probs=35.3
Q ss_pred cCCCEEEECCCCCCCC---CcchHHHHHHH-hCCCCcEEEEehhHHHHHHH
Q 027062 67 KNPRGVLISPGPGAPQ---DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 113 (229)
Q Consensus 67 ~~~dgiii~GG~~~~~---~~~~~~~~i~~-~~~~~PvlGIC~G~Qlla~a 113 (229)
.+||+|+|+||.+... +.....+.+++ .++++||..||.|-++|..+
T Consensus 93 ~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a 143 (231)
T cd03147 93 DDYGIFFVAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPAILANL 143 (231)
T ss_pred hhCcEEEECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhh
Confidence 3799999999966432 33345555654 35789999999999999886
No 120
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=97.46 E-value=0.0004 Score=56.74 Aligned_cols=91 Identities=13% Similarity=0.199 Sum_probs=60.4
Q ss_pred CCceEEEEECCC------chhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCC----CcchHHHHHH
Q 027062 23 NKNPIIVIDNYD------SFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ----DSGISLQTVL 92 (229)
Q Consensus 23 ~~~~ilvid~~~------~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~----~~~~~~~~i~ 92 (229)
..++|++|-..+ .|...+.++++++|+++..++..+...+.+. +.|+|+++||..... ....+.+.++
T Consensus 30 ~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d~~~~l~--~ad~I~v~GGnt~~l~~~l~~~gl~~~l~ 107 (233)
T PRK05282 30 GRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVADPVAAIE--NAEAIFVGGGNTFQLLKQLYERGLLAPIR 107 (233)
T ss_pred CCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchhhHHHHh--cCCEEEECCccHHHHHHHHHHCCcHHHHH
Confidence 467899996543 2456677888999999887765422333455 569999999964321 0111233343
Q ss_pred -HhCCCCcEEEEehhHHHHHHHhC
Q 027062 93 -ELGPTVPLFGVCMGLQCIGEAFG 115 (229)
Q Consensus 93 -~~~~~~PvlGIC~G~Qlla~alG 115 (229)
.+.+++|++|+|.|+-+++....
T Consensus 108 ~~~~~G~~~~G~SAGAii~~~~i~ 131 (233)
T PRK05282 108 EAVKNGTPYIGWSAGANVAGPTIR 131 (233)
T ss_pred HHHHCCCEEEEECHHHHhhhccce
Confidence 35678999999999988877554
No 121
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=97.44 E-value=0.00099 Score=50.96 Aligned_cols=75 Identities=11% Similarity=0.174 Sum_probs=50.2
Q ss_pred HHHHHHHHcCCEEEEEeCCc---------------cCHHHHhccCCCEEEECCCCCCC---CCcchHHHHHHH-hCCCCc
Q 027062 39 NLCQYMGELGYHFEVYRNDE---------------LTVEELKRKNPRGVLISPGPGAP---QDSGISLQTVLE-LGPTVP 99 (229)
Q Consensus 39 ~~~~~l~~~g~~~~v~~~~~---------------~~~~~l~~~~~dgiii~GG~~~~---~~~~~~~~~i~~-~~~~~P 99 (229)
...+.|+.+|+++.++..+. .+.++....++|.|+|+||.... .+.....+++++ ..++++
T Consensus 16 ~~~~~~~~a~~~v~~vs~~~~~~~~~~~g~~v~~~~~~~~~~~~~~D~liipGg~~~~~~~~~~~~l~~~l~~~~~~~~~ 95 (163)
T cd03135 16 TPVDVLRRAGIEVTTASLEKKLAVGSSHGIKVKADKTLSDVNLDDYDAIVIPGGLPGAQNLADNEKLIKLLKEFNAKGKL 95 (163)
T ss_pred HHHHHHHHCCCEEEEEEcCCCceEeccCCCEEEecCCHhHcCCCCCCEEEECCCCchHHHHHhCHHHHHHHHHHHHcCCE
Confidence 45677888888887664321 11222222368999999997322 234455666654 357799
Q ss_pred EEEEehhHHHHHHH
Q 027062 100 LFGVCMGLQCIGEA 113 (229)
Q Consensus 100 vlGIC~G~Qlla~a 113 (229)
|.+||-|..+|+.+
T Consensus 96 i~~ic~g~~~La~a 109 (163)
T cd03135 96 IAAICAAPAVLAKA 109 (163)
T ss_pred EEEEchhHHHHHHc
Confidence 99999999999986
No 122
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=97.41 E-value=0.00023 Score=51.54 Aligned_cols=41 Identities=15% Similarity=0.314 Sum_probs=27.6
Q ss_pred CCCEEEECCCCCCCC-----CcchHHHHHHH-hCCCCcEEEEehhHHHH
Q 027062 68 NPRGVLISPGPGAPQ-----DSGISLQTVLE-LGPTVPLFGVCMGLQCI 110 (229)
Q Consensus 68 ~~dgiii~GG~~~~~-----~~~~~~~~i~~-~~~~~PvlGIC~G~Qll 110 (229)
++|.||+|||..... ..+ .+.+++ ..+++|+||||+|.-+.
T Consensus 44 ~ad~lVlPGGa~~~~~~~L~~~g--~~~i~~~v~~g~p~LGIClGAy~a 90 (114)
T cd03144 44 KTALLVVPGGADLPYCRALNGKG--NRRIRNFVRNGGNYLGICAGAYLA 90 (114)
T ss_pred CCCEEEECCCChHHHHHHHHhhC--cHHHHHHHHCCCcEEEEecCccce
Confidence 679999999754321 111 334443 45679999999998766
No 123
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=97.38 E-value=0.0017 Score=51.47 Aligned_cols=88 Identities=10% Similarity=0.064 Sum_probs=53.9
Q ss_pred CceEEEEECCCchh----HHHHHHHHHcCCEEEEEeCCc-----------------cCHHHHhccCCCEEEECCCCCCCC
Q 027062 24 KNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDE-----------------LTVEELKRKNPRGVLISPGPGAPQ 82 (229)
Q Consensus 24 ~~~ilvid~~~~~~----~~~~~~l~~~g~~~~v~~~~~-----------------~~~~~l~~~~~dgiii~GG~~~~~ 82 (229)
++||+|+=. +.+. -...+.|+++|+++.+..... .+.+++...++|.|+|+||.....
T Consensus 2 ~~~~~il~~-~g~~~~e~~~p~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D~l~ipGG~~~~~ 80 (196)
T PRK11574 2 SASALVCLA-PGSEETEAVTTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDVIVLPGGIKGAE 80 (196)
T ss_pred CceEEEEeC-CCcchhhHhHHHHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCCEEEECCCCchhh
Confidence 355666653 3332 235677888888877654210 122233222689999999964322
Q ss_pred ---CcchHHHHHHH-hCCCCcEEEEehhHHHHHH
Q 027062 83 ---DSGISLQTVLE-LGPTVPLFGVCMGLQCIGE 112 (229)
Q Consensus 83 ---~~~~~~~~i~~-~~~~~PvlGIC~G~Qlla~ 112 (229)
+.....+++++ ..++++|.+||-|..+|..
T Consensus 81 ~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~ 114 (196)
T PRK11574 81 CFRDSPLLVETVRQFHRSGRIVAAICAAPATVLV 114 (196)
T ss_pred hhhhCHHHHHHHHHHHHCCCEEEEECHhHHHHHH
Confidence 33345666654 3578999999999997654
No 124
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=97.37 E-value=0.0012 Score=51.24 Aligned_cols=74 Identities=12% Similarity=0.229 Sum_probs=46.9
Q ss_pred HHHHHHHc-CCEEEEEeCCc--------------cCHHHHhccCCCEEEECCCCCC-CCCcchHHHHHHH-hCCCCcEEE
Q 027062 40 LCQYMGEL-GYHFEVYRNDE--------------LTVEELKRKNPRGVLISPGPGA-PQDSGISLQTVLE-LGPTVPLFG 102 (229)
Q Consensus 40 ~~~~l~~~-g~~~~v~~~~~--------------~~~~~l~~~~~dgiii~GG~~~-~~~~~~~~~~i~~-~~~~~PvlG 102 (229)
....|++. ++++.++..+. .+.+++...++|.|+|+||... ........+++++ ..+++++.+
T Consensus 17 ~~~~l~~~~~~~~~~~s~~~~~v~ss~g~~i~~~~~~~~~~~~~~D~l~I~Gg~~~~~~~~~~l~~~l~~~~~~~~~i~a 96 (170)
T cd03140 17 LAALLNSYEGFEVRTVSPTGEPVTSIGGLRVVPDYSLDDLPPEDYDLLILPGGDSWDNPEAPDLAGLVRQALKQGKPVAA 96 (170)
T ss_pred HHHHhcccCCcEEEEEeCCCCeeEecCCeEEccccchhHCCHhHccEEEEcCCcccccCCcHHHHHHHHHHHHcCCEEEE
Confidence 44556554 67776654321 1223332125799999999652 2233445666665 357799999
Q ss_pred EehhHHHHHHH
Q 027062 103 VCMGLQCIGEA 113 (229)
Q Consensus 103 IC~G~Qlla~a 113 (229)
||-|.++|+.+
T Consensus 97 ic~G~~~La~a 107 (170)
T cd03140 97 ICGATLALARA 107 (170)
T ss_pred EChHHHHHHHC
Confidence 99999999985
No 125
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=97.31 E-value=0.008 Score=52.31 Aligned_cols=87 Identities=14% Similarity=0.154 Sum_probs=49.5
Q ss_pred ceEEEEECCCchhH---HHHHHHHH-c--CCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc---hHHHHHHH-h
Q 027062 25 NPIIVIDNYDSFTY---NLCQYMGE-L--GYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG---ISLQTVLE-L 94 (229)
Q Consensus 25 ~~ilvid~~~~~~~---~~~~~l~~-~--g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~---~~~~~i~~-~ 94 (229)
|+|+|-.-.+.... .....|+. + .+.|..+..+....+. ...+++.+|++||.+.++... .-.+.|++ .
T Consensus 1 mnVlVY~G~G~~~~sv~~~~~~Lr~~l~p~y~V~~v~~~~l~~~p-w~~~~~LlV~PGG~d~~y~~~l~~~g~~~Ir~fV 79 (367)
T PF09825_consen 1 MNVLVYNGPGTSPESVRHTLESLRRLLSPHYAVIPVTADELLNEP-WQSKCALLVMPGGADLPYCRSLNGEGNRRIRQFV 79 (367)
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEeCHHHhhcCc-cccCCcEEEECCCcchHHHHhhChHHHHHHHHHH
Confidence 56777754443333 34444554 2 3344433322111111 123689999999987765322 22455665 3
Q ss_pred CCCCcEEEEehhHHHHHH
Q 027062 95 GPTVPLFGVCMGLQCIGE 112 (229)
Q Consensus 95 ~~~~PvlGIC~G~Qlla~ 112 (229)
.++.-.||||.|.-+-+.
T Consensus 80 ~~GG~YlGiCAGaY~as~ 97 (367)
T PF09825_consen 80 ENGGGYLGICAGAYYASS 97 (367)
T ss_pred HcCCcEEEECcchhhhcc
Confidence 457899999999988765
No 126
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=97.31 E-value=0.0013 Score=51.87 Aligned_cols=89 Identities=15% Similarity=0.218 Sum_probs=56.1
Q ss_pred ceEEEEECCCchh----HHHHHHHHHcCCEEEEEeCCc-----------------cCHHHHhccCCCEEEECCC-CCCCC
Q 027062 25 NPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDE-----------------LTVEELKRKNPRGVLISPG-PGAPQ 82 (229)
Q Consensus 25 ~~ilvid~~~~~~----~~~~~~l~~~g~~~~v~~~~~-----------------~~~~~l~~~~~dgiii~GG-~~~~~ 82 (229)
++|+++-.. ++. -.-...|+++|..+.+..... ...++++..+||+|+++|| .+.-.
T Consensus 3 ~~i~i~~~~-g~e~~E~~~p~~~l~~ag~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ydal~ipGG~~~~~~ 81 (188)
T COG0693 3 KKIAILLAD-GFEDLELIVPYDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDDADAADYDALVIPGGDHGPEY 81 (188)
T ss_pred ceeEEEecC-cceehhHhHHHHHHHHCCCeEEEEecCCCcceeecccCcceEecccccccCCHhHCCEEEECCCccchhh
Confidence 456666542 322 234577889999877654321 0111222226899999999 44433
Q ss_pred Cc--chHHHHHHHh-CCCCcEEEEehhHHHHHHHh
Q 027062 83 DS--GISLQTVLEL-GPTVPLFGVCMGLQCIGEAF 114 (229)
Q Consensus 83 ~~--~~~~~~i~~~-~~~~PvlGIC~G~Qlla~al 114 (229)
.. ..+++.++++ ..++||..||.|-++|+.+-
T Consensus 82 ~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L~~ag 116 (188)
T COG0693 82 LRPDPDLLAFVRDFYANGKPVAAICHGPAVLAAAG 116 (188)
T ss_pred ccCcHHHHHHHHHHHHcCCEEEEEChhHHHHhccc
Confidence 22 4566666653 56899999999999998764
No 127
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=97.22 E-value=0.0074 Score=48.24 Aligned_cols=169 Identities=14% Similarity=0.158 Sum_probs=83.6
Q ss_pred HHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCC----Cc-chHHHHHH-HhCCCCcEEEEehhHHHHHHH
Q 027062 40 LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ----DS-GISLQTVL-ELGPTVPLFGVCMGLQCIGEA 113 (229)
Q Consensus 40 ~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~----~~-~~~~~~i~-~~~~~~PvlGIC~G~Qlla~a 113 (229)
+.+..+.+|+.+.+.+....+ .+....+|.+++.||...-. +. ..-...++ .+++++|+|.||-|.|+|.+.
T Consensus 26 Lr~ra~~rgi~v~i~~vsl~d--~~~~~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~QlLG~y 103 (250)
T COG3442 26 LRQRAEKRGIKVEIVEVSLTD--TFPDDSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQLLGQY 103 (250)
T ss_pred ehHHHHhcCCceEEEEeecCC--CCCcccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchhhccce
Confidence 446677889988887753211 22222568887776654211 11 11112233 357889999999999999875
Q ss_pred h----CCeeeecC----------CccccCccceeEeccCCCCcccc--cCCCceeeeeeeceeee-ccCCCCCCeEEEEE
Q 027062 114 F----GGKIVRSP----------LGVMHGKSSLVYYDEKGEDGLLA--GLSNPFTAGRYHSLVIE-KESFPSDALEVTAW 176 (229)
Q Consensus 114 l----Gg~v~~~~----------~~~~~g~~~~~~~~~~~~~~l~~--~l~~~~~~~~~H~~~v~-~~~l~~~~~~~la~ 176 (229)
+ |-++.... ..+..|. +.. ++... .+.+...-+.+|+-.-- .....|=|-.+.+.
T Consensus 104 Y~~a~G~ri~GlGiLd~~T~~~~~~R~IGd---iv~-----~~~~~~e~~~et~~GFENH~GrT~L~~d~~pLG~Vv~G~ 175 (250)
T COG3442 104 YETASGTRIDGLGILDHYTENPQTKRFIGD---IVI-----ENTLAGEEFGETLVGFENHGGRTYLGPDVKPLGKVVYGY 175 (250)
T ss_pred eecCCCcEeecccceeeeeccccccceeee---EEe-----ecccchHHhCCeeeeeecCCCceecCCCCccceeEEEcc
Confidence 3 33332211 0111111 001 11111 13344556666753211 00112224444443
Q ss_pred cCC--CceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHh
Q 027062 177 TED--GLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKE 223 (229)
Q Consensus 177 ~~~--~~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~~~~~~ 223 (229)
..+ ..-+++.++ +++|+=||==..+ ....+-..++..+...+
T Consensus 176 GNn~eD~~eG~~yk---n~~aTY~HGP~L~--rNp~LAd~Ll~tAl~~k 219 (250)
T COG3442 176 GNNGEDGTEGAHYK---NVIATYFHGPILS--RNPELADRLLTTALEKK 219 (250)
T ss_pred CCCccccccceeee---eeEEEeecCcccc--CCHHHHHHHHHHHHHHh
Confidence 322 134566555 3899999955432 33455566666665544
No 128
>PRK04155 chaperone protein HchA; Provisional
Probab=97.20 E-value=0.0017 Score=54.73 Aligned_cols=47 Identities=21% Similarity=0.211 Sum_probs=34.1
Q ss_pred cCCCEEEECCCCCCCC---CcchHHHHHHH-hCCCCcEEEEehhHHHHHHH
Q 027062 67 KNPRGVLISPGPGAPQ---DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 113 (229)
Q Consensus 67 ~~~dgiii~GG~~~~~---~~~~~~~~i~~-~~~~~PvlGIC~G~Qlla~a 113 (229)
.+||+|+|+||.+... +...+.+.+++ .++++||..||.|-++|..+
T Consensus 146 ~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll~a 196 (287)
T PRK04155 146 SDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPAALLAA 196 (287)
T ss_pred ccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence 4799999999976533 23334455554 45789999999999877663
No 129
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=97.20 E-value=0.0026 Score=49.90 Aligned_cols=46 Identities=20% Similarity=0.310 Sum_probs=35.4
Q ss_pred CCCEEEECCCCCCC--CCcchHHHHHHHh-CCCCcEEEEehhHHHHHHH
Q 027062 68 NPRGVLISPGPGAP--QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (229)
Q Consensus 68 ~~dgiii~GG~~~~--~~~~~~~~~i~~~-~~~~PvlGIC~G~Qlla~a 113 (229)
++|.|+|+||.... .+.....+++++. .++++|.+||-|.++|+.+
T Consensus 64 ~~D~liipGg~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~a 112 (187)
T cd03137 64 AADTVIVPGGPDVDGRPPPPALLAALRRAAARGARVASVCTGAFVLAEA 112 (187)
T ss_pred CCCEEEECCCcccccccCCHHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence 68999999996643 3344556666653 5679999999999999885
No 130
>PRK11249 katE hydroperoxidase II; Provisional
Probab=97.18 E-value=0.0019 Score=60.88 Aligned_cols=104 Identities=13% Similarity=0.019 Sum_probs=66.3
Q ss_pred ccccccccccc---cCCCceEEEEECCCch---hHHHHHHHHHcCCEEEEEeCCc--------------cCHHHHhccCC
Q 027062 10 SKSLYLDDKKS---KNNKNPIIVIDNYDSF---TYNLCQYMGELGYHFEVYRNDE--------------LTVEELKRKNP 69 (229)
Q Consensus 10 ~~~~~~~~~~~---~~~~~~ilvid~~~~~---~~~~~~~l~~~g~~~~v~~~~~--------------~~~~~l~~~~~ 69 (229)
.+++.|+.... ...+++|+||-..+.. ...+.++|++.|+.+.++.... .+.++.....|
T Consensus 580 ~~s~als~~~~~~~~~~gRKIaILVaDG~d~~ev~~~~daL~~AGa~V~VVSp~~G~V~~s~G~~I~aD~t~~~~~Sv~F 659 (752)
T PRK11249 580 KKDPALSLYAIPDGDIKGRKVAILLNDGVDAADLLAILKALKAKGVHAKLLYPRMGEVTADDGTVLPIAATFAGAPSLTF 659 (752)
T ss_pred CCCcchhccCCCCCCccccEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCEEecceeeccCCccCC
Confidence 34566665543 2346788888643222 2346788889999998875321 11112222258
Q ss_pred CEEEECCCCCCCC---CcchHHHHHHH-hCCCCcEEEEehhHHHHHHH
Q 027062 70 RGVLISPGPGAPQ---DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 113 (229)
Q Consensus 70 dgiii~GG~~~~~---~~~~~~~~i~~-~~~~~PvlGIC~G~Qlla~a 113 (229)
|+|+|+||..... .....+.++++ ..+.++|.+||-|.++|+.+
T Consensus 660 DAVvVPGG~~~~~~L~~d~~al~fL~eaykHgK~IAAiCaG~~LLaaA 707 (752)
T PRK11249 660 DAVIVPGGKANIADLADNGDARYYLLEAYKHLKPIALAGDARKLKAAL 707 (752)
T ss_pred CEEEECCCchhHHHHhhCHHHHHHHHHHHHcCCEEEEeCccHHHHHhc
Confidence 9999999965432 33445666664 45779999999999999974
No 131
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=97.14 E-value=0.0018 Score=52.55 Aligned_cols=46 Identities=17% Similarity=0.184 Sum_probs=35.0
Q ss_pred CCCEEEECCCCCCCC---CcchHHHHHHH-hCCCCcEEEEehhHHHHHHH
Q 027062 68 NPRGVLISPGPGAPQ---DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 113 (229)
Q Consensus 68 ~~dgiii~GG~~~~~---~~~~~~~~i~~-~~~~~PvlGIC~G~Qlla~a 113 (229)
+||+|+|+||.+... +.....+++++ ..++++|.+||.|-.+|+.+
T Consensus 90 ~~dal~ipGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~a 139 (221)
T cd03141 90 DYDAIFIPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLNV 139 (221)
T ss_pred HceEEEECCCcccccccccCHHHHHHHHHHHHcCCEEEEEcchHHHHHhc
Confidence 689999999975432 33445666654 35789999999999999985
No 132
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=97.03 E-value=0.0039 Score=51.05 Aligned_cols=46 Identities=20% Similarity=0.167 Sum_probs=33.8
Q ss_pred CCCEEEECCCCCCCC---CcchHHHHHHH-hCCCCcEEEEehhHHHHHHH
Q 027062 68 NPRGVLISPGPGAPQ---DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 113 (229)
Q Consensus 68 ~~dgiii~GG~~~~~---~~~~~~~~i~~-~~~~~PvlGIC~G~Qlla~a 113 (229)
+||+|+|+||.+... +...+.+.+++ .++++||-.||.|-++|..+
T Consensus 96 dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~~a 145 (232)
T cd03148 96 EYAAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPAAFLAA 145 (232)
T ss_pred hceEEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHHHHHhc
Confidence 789999999965433 33344555554 35789999999999977664
No 133
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=97.00 E-value=0.02 Score=50.47 Aligned_cols=180 Identities=16% Similarity=0.166 Sum_probs=98.3
Q ss_pred CCCceEEEEECCCch---hHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCC-----CcchHHHHHHH
Q 027062 22 NNKNPIIVIDNYDSF---TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-----DSGISLQTVLE 93 (229)
Q Consensus 22 ~~~~~ilvid~~~~~---~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~-----~~~~~~~~i~~ 93 (229)
....||+|..- ..| ...-.+.|+++|++++.+..- ..+++.+ ++|+|.|+||.--.+ +.....+.|++
T Consensus 243 ~~~~rIAVA~D-~AF~FyY~~nl~~Lr~~GAelv~FSPL--~D~~lP~-~~D~vYlgGGYPElfA~~L~~n~~~~~~i~~ 318 (451)
T COG1797 243 PLGVRIAVARD-AAFNFYYPENLELLREAGAELVFFSPL--ADEELPP-DVDAVYLGGGYPELFAEELSANESMRRAIKA 318 (451)
T ss_pred CcCceEEEEec-chhccccHHHHHHHHHCCCEEEEeCCc--CCCCCCC-CCCEEEeCCCChHHHHHHHhhCHHHHHHHHH
Confidence 33478999863 222 234457899999999988642 1133432 479999999953222 12224455655
Q ss_pred -hCCCCcEEEEehhHHHHHHHh---CCeeeecC----Cc-----c--ccCccceeEeccCCCCcccccCCCceeeeeeec
Q 027062 94 -LGPTVPLFGVCMGLQCIGEAF---GGKIVRSP----LG-----V--MHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHS 158 (229)
Q Consensus 94 -~~~~~PvlGIC~G~Qlla~al---Gg~v~~~~----~~-----~--~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~ 158 (229)
.+.++||+|=|-|+-.|++.+ .|....+- .. + ..| ...... ..+.++......+.-+.+|.
T Consensus 319 ~~~~G~piyaECGGlMYL~~~le~~~G~~~~M~Gvlp~~~~m~~Rl~~lG-Y~~~~~---~~d~~~~~~G~~irGHEFHy 394 (451)
T COG1797 319 FAAAGKPIYAECGGLMYLGESLEDADGDTYEMVGVLPGSTRMTKRLQALG-YREAEA---VDDTLLLRAGEKIRGHEFHY 394 (451)
T ss_pred HHHcCCceEEecccceeehhheeccCCceeeeeeeeccchhhhhhhhccc-eeEEEe---cCCcccccCCceeeeeeeee
Confidence 357899999999999998875 22222221 00 0 011 111111 13334444445677777776
Q ss_pred eeeeccCCCCCCeEEEE--EcCCCc---eEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHHH
Q 027062 159 LVIEKESFPSDALEVTA--WTEDGL---IMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI 219 (229)
Q Consensus 159 ~~v~~~~l~~~~~~~la--~~~~~~---i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~~ 219 (229)
-.+.. .++ .+... ..-++. -.++... +++|.=.|-=.. ....+..+|++.|
T Consensus 395 S~~~~---~~~-~~~a~~~~~g~g~~~~~~G~~~g---nv~asY~H~H~~---s~~~~~~~~v~~~ 450 (451)
T COG1797 395 SRLIT---EED-AEPAFRVRRGDGIDNGRDGYRSG---NVLASYLHLHFA---SNPAFAARFVAAA 450 (451)
T ss_pred eeccc---CCc-CceeeeeecccCccccccceeeC---CeEEEEEeeecc---cCHHHHHHHHHhh
Confidence 65532 111 11111 111221 2355544 378877776553 2446788888765
No 134
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=96.85 E-value=0.0068 Score=47.15 Aligned_cols=75 Identities=11% Similarity=0.164 Sum_probs=47.6
Q ss_pred HHHHHHHHcCCEEEE--EeCC---c------------cCHHHHhccCCCEEEECCCCCCC---CCcchHHHHHHHh-CCC
Q 027062 39 NLCQYMGELGYHFEV--YRND---E------------LTVEELKRKNPRGVLISPGPGAP---QDSGISLQTVLEL-GPT 97 (229)
Q Consensus 39 ~~~~~l~~~g~~~~v--~~~~---~------------~~~~~l~~~~~dgiii~GG~~~~---~~~~~~~~~i~~~-~~~ 97 (229)
...+.|+.+|.++.+ +..+ . .+.++....++|.|+|+||.... .+.....+++++. .++
T Consensus 17 ~~~~~l~~a~~~~~~~~~s~~g~~~v~~~~g~~v~~~~~~~~~~~~~~D~l~v~Gg~~~~~~~~~~~~l~~~l~~~~~~~ 96 (179)
T TIGR01383 17 ITVDVLRRAGIKVTVAIVGLNGKLPVKGSRGVKILADASLEDVDLEEFDAIVLPGGMPGAENLRNSKLLLNILKKQESKG 96 (179)
T ss_pred HHHHHHHHCCCEEEEEEeccCCCcceEcCCCCEEeCCCCHHHCCcccCCEEEECCCchHHHHHhhCHHHHHHHHHHHHCC
Confidence 356777777876664 3221 0 11222212368999999986321 2344456666653 577
Q ss_pred CcEEEEehhHHHHHHH
Q 027062 98 VPLFGVCMGLQCIGEA 113 (229)
Q Consensus 98 ~PvlGIC~G~Qlla~a 113 (229)
++|.+||-|..+|+.+
T Consensus 97 ~~i~~ic~G~~~La~a 112 (179)
T TIGR01383 97 KLVAAICAAPAVLLAA 112 (179)
T ss_pred CEEEEEChhHHHHHhc
Confidence 9999999999999985
No 135
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=96.83 E-value=0.0004 Score=52.61 Aligned_cols=54 Identities=22% Similarity=0.439 Sum_probs=37.6
Q ss_pred CHHHHhccCCCEEEECCCCCCC---C-CcchHHHHHHHh-CCCCcEEEEehhHHHHHHH
Q 027062 60 TVEELKRKNPRGVLISPGPGAP---Q-DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (229)
Q Consensus 60 ~~~~l~~~~~dgiii~GG~~~~---~-~~~~~~~~i~~~-~~~~PvlGIC~G~Qlla~a 113 (229)
+.+++...+||+|+|+||.+.. . +...+.+.+++. .+++||.+||.|-.+|+.+
T Consensus 29 ~l~~~~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g~~~L~~~ 87 (147)
T PF01965_consen 29 TLDEIDPSDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHGPAVLAAA 87 (147)
T ss_dssp EGGGHTGGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTCHHHHHHT
T ss_pred cHHHCChhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCCcchhhcc
Confidence 4556665578999999997732 2 324556666653 4689999999999888876
No 136
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=96.77 E-value=0.0068 Score=48.70 Aligned_cols=89 Identities=15% Similarity=0.192 Sum_probs=59.2
Q ss_pred CCceEEEEECCC----chhHHHHHHHHHcCCEEEEEeCCc-cC-H---HHHhccCCCEEEECCCCCCCC----CcchHHH
Q 027062 23 NKNPIIVIDNYD----SFTYNLCQYMGELGYHFEVYRNDE-LT-V---EELKRKNPRGVLISPGPGAPQ----DSGISLQ 89 (229)
Q Consensus 23 ~~~~ilvid~~~----~~~~~~~~~l~~~g~~~~v~~~~~-~~-~---~~l~~~~~dgiii~GG~~~~~----~~~~~~~ 89 (229)
...+|++|...+ .+...+.++++++|++...+...+ .+ . +.+. +.|+|+++||..... ......+
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~--~ad~I~~~GG~~~~~~~~l~~t~~~~ 105 (210)
T cd03129 28 AGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLL--EADGIFVGGGNQLRLLSVLRETPLLD 105 (210)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHh--hCCEEEEcCCcHHHHHHHHHhCChHH
Confidence 578899997754 345678888999999888665421 11 1 2233 679999999854221 1111233
Q ss_pred HHH-HhCCCCcEEEEehhHHHHHHH
Q 027062 90 TVL-ELGPTVPLFGVCMGLQCIGEA 113 (229)
Q Consensus 90 ~i~-~~~~~~PvlGIC~G~Qlla~a 113 (229)
.++ .+.++.|+.|+|.|+.+++..
T Consensus 106 ~i~~~~~~G~v~~G~SAGA~~~~~~ 130 (210)
T cd03129 106 AILKRVARGVVIGGTSAGAAVMGET 130 (210)
T ss_pred HHHHHHHcCCeEEEcCHHHHHhhhc
Confidence 333 234789999999999999886
No 137
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=96.65 E-value=0.011 Score=46.08 Aligned_cols=46 Identities=17% Similarity=0.237 Sum_probs=35.0
Q ss_pred CCCEEEECCCCCCC--CCcchHHHHHHH-hCCCCcEEEEehhHHHHHHH
Q 027062 68 NPRGVLISPGPGAP--QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 113 (229)
Q Consensus 68 ~~dgiii~GG~~~~--~~~~~~~~~i~~-~~~~~PvlGIC~G~Qlla~a 113 (229)
.+|+|+|+||.+.. .......+++++ ..++++|.+||-|..+|+.+
T Consensus 62 ~~D~lvipgg~~~~~~~~~~~~~~~l~~~~~~~k~i~aic~g~~~La~a 110 (183)
T cd03139 62 DLDVLLVPGGGGTRALVNDPALLDFIRRQAARAKYVTSVCTGALLLAAA 110 (183)
T ss_pred CCCEEEECCCcchhhhccCHHHHHHHHHhcccCCEEEEEchHHHHHHhc
Confidence 68999999996543 233456677765 45789999999999998884
No 138
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=96.10 E-value=0.38 Score=38.69 Aligned_cols=167 Identities=19% Similarity=0.182 Sum_probs=79.6
Q ss_pred eEEEEECCC-ch--------hHHHHHHHH-HcCCEEEEEeC-CccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHH-
Q 027062 26 PIIVIDNYD-SF--------TYNLCQYMG-ELGYHFEVYRN-DELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE- 93 (229)
Q Consensus 26 ~ilvid~~~-~~--------~~~~~~~l~-~~g~~~~v~~~-~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~- 93 (229)
|||||.-.. .+ ...+.+.|+ ..|+++++... +..+.+.|+ ++|.||+....+..-+. .-.+.+.+
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~~~~~~~~~L~--~~Dvvv~~~~~~~~l~~-~~~~al~~~ 77 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTEDPDDLTPENLK--GYDVVVFYNTGGDELTD-EQRAALRDY 77 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECCSGGCTSHHCHC--T-SEEEEE-SSCCGS-H-HHHHHHHHH
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEeCcccCChhHhc--CCCEEEEECCCCCcCCH-HHHHHHHHH
Confidence 678886541 11 234666677 67888887654 223334455 67999998766422222 22333333
Q ss_pred hCCCCcEEEEehhH-------HHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccCC
Q 027062 94 LGPTVPLFGVCMGL-------QCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESF 166 (229)
Q Consensus 94 ~~~~~PvlGIC~G~-------Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l 166 (229)
++++.+++|+..+. .-....+||.....+. .. ...+.. ...++|+.+++|..|.+.-- .|.... .
T Consensus 78 v~~Ggglv~lH~~~~~~~~~~~~~~~l~Gg~f~~h~~---~~-~~~v~~-~~~~HPi~~gl~~~f~~~DE-~Y~~~~--~ 149 (217)
T PF06283_consen 78 VENGGGLVGLHGAATDSFPDWPEYNELLGGYFKGHPP---PQ-PFTVRV-EDPDHPITRGLPESFTIYDE-WYYFLR--D 149 (217)
T ss_dssp HHTT-EEEEEGGGGGCCHTT-HHHHHHHS--SEEEEC---EE-EEEEEE-SSTTSCCCTTS-SEEEEEEE-EEES-B--S
T ss_pred HHcCCCEEEEcccccccchhHHHHHHeeCccccCCCC---Cc-eEEEEE-cCCCChhhcCCCCCceEccc-cccccc--C
Confidence 46789999999443 2234467765544321 11 112222 23479999999877765321 111111 1
Q ss_pred CCCCeEEEEEcC---------CC---ceEEEEe-CCCCcEEEEeccCCCC
Q 027062 167 PSDALEVTAWTE---------DG---LIMAARH-KKYKHLQGVQFHPESI 203 (229)
Q Consensus 167 ~~~~~~~la~~~---------~~---~i~a~~~-~~~~~i~g~QfHPE~~ 203 (229)
+.++..+|++.. .+ ++.-... ..++-++....|.+.+
T Consensus 150 ~~~~~~vL~~~~~~~~~~~~~~~~~~Pv~W~~~~GkGRvf~~~lGH~~~~ 199 (217)
T PF06283_consen 150 PRPNVTVLLTADESSYDPEGGEGGDHPVAWTREYGKGRVFYTTLGHDEET 199 (217)
T ss_dssp ---CEEEEEEEE--GGG--TTTSSEEEEEEEEECTTEEEEEE----TTSH
T ss_pred CCCCEEEEEEEEeccccccccCCCeEEEEEEEEeCCeeEEEECCCCChhh
Confidence 334577777654 11 2322222 2234456666798864
No 139
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=96.07 E-value=0.021 Score=46.00 Aligned_cols=70 Identities=13% Similarity=0.176 Sum_probs=45.7
Q ss_pred HHHHHHcCCEEEEEeCCc---------------cCHHHHhccCCCEEEECCC-CCCCC--CcchHHHHHHH-hCCCCcEE
Q 027062 41 CQYMGELGYHFEVYRNDE---------------LTVEELKRKNPRGVLISPG-PGAPQ--DSGISLQTVLE-LGPTVPLF 101 (229)
Q Consensus 41 ~~~l~~~g~~~~v~~~~~---------------~~~~~l~~~~~dgiii~GG-~~~~~--~~~~~~~~i~~-~~~~~Pvl 101 (229)
...|++.|+++.+...+. ....+....+||.|||+|| ++.-. +.....+.+++ ...++.+.
T Consensus 25 ~dVLrr~Gi~Vt~ag~~~~~~vkcs~~v~~~~d~~l~D~~~~~yDviilPGG~~g~e~L~~~~~v~~lvK~q~~~gkLIa 104 (247)
T KOG2764|consen 25 IDVLRRGGIDVTVAGPNKKEGVKCSRGVHILPDNALFDVVDSKYDVIILPGGLPGAETLSECEKVVDLVKEQAESGKLIA 104 (247)
T ss_pred HHHHHhcCceEEEecCCCCcccccccceEecccccchhhccccccEEEecCCchhhhhhhhcHHHHHHHHHHHhcCCeEE
Confidence 577899999998765221 1222333357999999999 66532 34444455554 34689999
Q ss_pred EEehhHHHH
Q 027062 102 GVCMGLQCI 110 (229)
Q Consensus 102 GIC~G~Qll 110 (229)
.||.|--++
T Consensus 105 aICaap~~a 113 (247)
T KOG2764|consen 105 AICAAPLTA 113 (247)
T ss_pred EeecchHHH
Confidence 999985333
No 140
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=96.00 E-value=0.013 Score=46.27 Aligned_cols=46 Identities=20% Similarity=0.291 Sum_probs=34.4
Q ss_pred CCCEEEECCCCCCC-----CCcchHHHHHHH-hCCCCcEEEEehhHHHHHHH
Q 027062 68 NPRGVLISPGPGAP-----QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 113 (229)
Q Consensus 68 ~~dgiii~GG~~~~-----~~~~~~~~~i~~-~~~~~PvlGIC~G~Qlla~a 113 (229)
++|.|+|+||.... ......++++++ ..++++|.+||-|..+|+.+
T Consensus 69 ~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 120 (195)
T cd03138 69 APDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAEA 120 (195)
T ss_pred CCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHHHc
Confidence 68999999986542 233445666664 35779999999999999874
No 141
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=95.76 E-value=0.013 Score=45.05 Aligned_cols=46 Identities=20% Similarity=0.309 Sum_probs=34.6
Q ss_pred CCCEEEECCCCC--CCCCcchHHHHHHH-hCCCCcEEEEehhHHHHHHH
Q 027062 68 NPRGVLISPGPG--APQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 113 (229)
Q Consensus 68 ~~dgiii~GG~~--~~~~~~~~~~~i~~-~~~~~PvlGIC~G~Qlla~a 113 (229)
++|.|||+||+. .......+++++++ ..++.+|.+||-|..+|+++
T Consensus 61 ~~D~lvvpg~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 109 (166)
T PF13278_consen 61 DFDILVVPGGPGFDAAAKDPALLDWLRQQHAQGTYIAAICTGALLLAEA 109 (166)
T ss_dssp CCSEEEEE-STTHHHHTT-HHHHHHHHHHHCCTSEEEEETTHHHHHHHT
T ss_pred cCCEEEeCCCCCchhcccCHHHHHHhhhhhccceEEeeeehHHHHHhhh
Confidence 679999999988 22334556677765 35779999999999999986
No 142
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.51 E-value=0.11 Score=44.02 Aligned_cols=77 Identities=18% Similarity=0.233 Sum_probs=50.7
Q ss_pred CceEEEEECCCc-----hhHHHHHHHHHcCCEEEEEeCCcc---------------CHHHHhccCCCEEEECCCCCCCCC
Q 027062 24 KNPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRNDEL---------------TVEELKRKNPRGVLISPGPGAPQD 83 (229)
Q Consensus 24 ~~~ilvid~~~~-----~~~~~~~~l~~~g~~~~v~~~~~~---------------~~~~l~~~~~dgiii~GG~~~~~~ 83 (229)
.++|+|+-+.+. ....+.+||++.|+++.+...... +..++. .++|.+|..||-|+
T Consensus 5 ~~~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~D~vi~lGGDGT--- 80 (296)
T PRK04539 5 FHNIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELG-QYCDLVAVLGGDGT--- 80 (296)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcC-cCCCEEEEECCcHH---
Confidence 345888866433 234578889999999887532100 112222 14799999999764
Q ss_pred cchHHHHHHHh-CCCCcEEEEehhH
Q 027062 84 SGISLQTVLEL-GPTVPLFGVCMGL 107 (229)
Q Consensus 84 ~~~~~~~i~~~-~~~~PvlGIC~G~ 107 (229)
++...+.. ..++||+||-.|.
T Consensus 81 ---~L~aa~~~~~~~~PilGIN~G~ 102 (296)
T PRK04539 81 ---FLSVAREIAPRAVPIIGINQGH 102 (296)
T ss_pred ---HHHHHHHhcccCCCEEEEecCC
Confidence 56666654 3579999999996
No 143
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.37 E-value=0.072 Score=44.77 Aligned_cols=77 Identities=18% Similarity=0.332 Sum_probs=50.8
Q ss_pred ceEEEEECCCc-----hhHHHHHHHHHcCCEEEEEeCCc-----c---CHHHHhccCCCEEEECCCCCCCCCcchHHHHH
Q 027062 25 NPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRNDE-----L---TVEELKRKNPRGVLISPGPGAPQDSGISLQTV 91 (229)
Q Consensus 25 ~~ilvid~~~~-----~~~~~~~~l~~~g~~~~v~~~~~-----~---~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i 91 (229)
|||+|+-+.+. ....+.+||++.|+++.+..... . ...++...++|.+|..||.|. +++.+
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDGT------lL~a~ 74 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIAIGGDGT------ILRIE 74 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEEEeCcHH------HHHHH
Confidence 67888866443 23457888999999988764210 0 001222236799999999774 44555
Q ss_pred HHhCCCCcEEEEehhH
Q 027062 92 LELGPTVPLFGVCMGL 107 (229)
Q Consensus 92 ~~~~~~~PvlGIC~G~ 107 (229)
+....++|++||=.|.
T Consensus 75 ~~~~~~~pi~gIn~G~ 90 (277)
T PRK03708 75 HKTKKDIPILGINMGT 90 (277)
T ss_pred HhcCCCCeEEEEeCCC
Confidence 5344679999999997
No 144
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.27 E-value=0.1 Score=44.14 Aligned_cols=77 Identities=18% Similarity=0.227 Sum_probs=50.4
Q ss_pred CceEEEEECCCc-----hhHHHHHHHHHcCCEEEEEeCCc--c--------CHHHHhccCCCEEEECCCCCCCCCcchHH
Q 027062 24 KNPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRNDE--L--------TVEELKRKNPRGVLISPGPGAPQDSGISL 88 (229)
Q Consensus 24 ~~~ilvid~~~~-----~~~~~~~~l~~~g~~~~v~~~~~--~--------~~~~l~~~~~dgiii~GG~~~~~~~~~~~ 88 (229)
.++|+|+-+.+. ....+.+||++.|+++.+..... . +.+++. .++|.+|..||-|+ ++
T Consensus 5 ~~~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~vi~lGGDGT------~L 77 (292)
T PRK03378 5 FKCIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIG-QQADLAIVVGGDGN------ML 77 (292)
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcC-CCCCEEEEECCcHH------HH
Confidence 445888866433 23457888999999887654210 0 111221 15799999999764 55
Q ss_pred HHHHHhC-CCCcEEEEehhH
Q 027062 89 QTVLELG-PTVPLFGVCMGL 107 (229)
Q Consensus 89 ~~i~~~~-~~~PvlGIC~G~ 107 (229)
+..+.+. .++||+||-.|.
T Consensus 78 ~aa~~~~~~~~Pilgin~G~ 97 (292)
T PRK03378 78 GAARVLARYDIKVIGINRGN 97 (292)
T ss_pred HHHHHhcCCCCeEEEEECCC
Confidence 6665543 479999999998
No 145
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=95.13 E-value=0.18 Score=42.70 Aligned_cols=77 Identities=22% Similarity=0.331 Sum_probs=50.8
Q ss_pred CceEEEEECCCc-----hhHHHHHHHHHcCCEEEEEeCCc----------cCHHHHhccCCCEEEECCCCCCCCCcchHH
Q 027062 24 KNPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRNDE----------LTVEELKRKNPRGVLISPGPGAPQDSGISL 88 (229)
Q Consensus 24 ~~~ilvid~~~~-----~~~~~~~~l~~~g~~~~v~~~~~----------~~~~~l~~~~~dgiii~GG~~~~~~~~~~~ 88 (229)
.++|+|+-+.+. ....+.++|++.|+++.+..... .+.+++.+ ++|.+|..||.|+ ++
T Consensus 5 ~~~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~-~~d~vi~~GGDGt------~l 77 (291)
T PRK02155 5 FKTVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGA-RADLAVVLGGDGT------ML 77 (291)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhcc-CCCEEEEECCcHH------HH
Confidence 345888866444 23567888999999877653210 11123221 5799999999764 56
Q ss_pred HHHHHh-CCCCcEEEEehhH
Q 027062 89 QTVLEL-GPTVPLFGVCMGL 107 (229)
Q Consensus 89 ~~i~~~-~~~~PvlGIC~G~ 107 (229)
+.++.+ ..++|+|||-.|.
T Consensus 78 ~~~~~~~~~~~pilGIn~G~ 97 (291)
T PRK02155 78 GIGRQLAPYGVPLIGINHGR 97 (291)
T ss_pred HHHHHhcCCCCCEEEEcCCC
Confidence 666654 4689999999986
No 146
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.07 E-value=0.15 Score=43.49 Aligned_cols=77 Identities=17% Similarity=0.311 Sum_probs=50.4
Q ss_pred CceEEEEECCCc-----hhHHHHHHHHHcCCEEEEEeCCcc------------------C-HHHHhccCCCEEEECCCCC
Q 027062 24 KNPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRNDEL------------------T-VEELKRKNPRGVLISPGPG 79 (229)
Q Consensus 24 ~~~ilvid~~~~-----~~~~~~~~l~~~g~~~~v~~~~~~------------------~-~~~l~~~~~dgiii~GG~~ 79 (229)
.++|+|+-+.+. ....+.+||++.|+++.+...... + .+++. .++|.+|..||-|
T Consensus 5 ~~~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~D~vi~lGGDG 83 (306)
T PRK03372 5 SRRVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAA-DGCELVLVLGGDG 83 (306)
T ss_pred ccEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcc-cCCCEEEEEcCCH
Confidence 355888866433 235678889999999887542110 0 01121 2479999999976
Q ss_pred CCCCcchHHHHHHHh-CCCCcEEEEehhH
Q 027062 80 APQDSGISLQTVLEL-GPTVPLFGVCMGL 107 (229)
Q Consensus 80 ~~~~~~~~~~~i~~~-~~~~PvlGIC~G~ 107 (229)
+ ++...+.. ..++|||||-.|.
T Consensus 84 T------~L~aar~~~~~~~PilGIN~G~ 106 (306)
T PRK03372 84 T------ILRAAELARAADVPVLGVNLGH 106 (306)
T ss_pred H------HHHHHHHhccCCCcEEEEecCC
Confidence 4 55666553 4679999999884
No 147
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.05 E-value=0.17 Score=42.92 Aligned_cols=76 Identities=21% Similarity=0.270 Sum_probs=50.1
Q ss_pred ceEEEEECCCc-----hhHHHHHHHHHcCCEEEEEeCCc--c--------------CHHHHhccCCCEEEECCCCCCCCC
Q 027062 25 NPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRNDE--L--------------TVEELKRKNPRGVLISPGPGAPQD 83 (229)
Q Consensus 25 ~~ilvid~~~~-----~~~~~~~~l~~~g~~~~v~~~~~--~--------------~~~~l~~~~~dgiii~GG~~~~~~ 83 (229)
|+|.|+-+... ....+.+||++.|+++.+..... . +.+++.. ++|.+|..||.|+
T Consensus 1 m~igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlvi~lGGDGT--- 76 (292)
T PRK01911 1 MKIAIFGQTYQESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDG-SADMVISIGGDGT--- 76 (292)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhccc-CCCEEEEECCcHH---
Confidence 56888866433 23557888999999988754210 0 1122221 4799999999764
Q ss_pred cchHHHHHHHh-CCCCcEEEEehhH
Q 027062 84 SGISLQTVLEL-GPTVPLFGVCMGL 107 (229)
Q Consensus 84 ~~~~~~~i~~~-~~~~PvlGIC~G~ 107 (229)
+++..+.+ ..++|||||-.|.
T Consensus 77 ---~L~aa~~~~~~~~PilGIN~G~ 98 (292)
T PRK01911 77 ---FLRTATYVGNSNIPILGINTGR 98 (292)
T ss_pred ---HHHHHHHhcCCCCCEEEEecCC
Confidence 56666654 3579999999986
No 148
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=95.00 E-value=0.053 Score=42.42 Aligned_cols=46 Identities=20% Similarity=0.111 Sum_probs=34.2
Q ss_pred CCCEEEECCCCCCC-CCcchHHHHHHH-hCCCCcEEEEehhHHHHHHH
Q 027062 68 NPRGVLISPGPGAP-QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 113 (229)
Q Consensus 68 ~~dgiii~GG~~~~-~~~~~~~~~i~~-~~~~~PvlGIC~G~Qlla~a 113 (229)
++|.|+|+||.... ......++++++ ..+++.|.+||-|..+|+.+
T Consensus 64 ~~D~liipgg~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~La~a 111 (185)
T cd03136 64 PLDYLFVVGGLGARRAVTPALLAWLRRAARRGVALGGIDTGAFLLARA 111 (185)
T ss_pred CCCEEEEeCCCCccccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence 67999999986533 233445666664 35779999999999999874
No 149
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=94.11 E-value=0.11 Score=44.56 Aligned_cols=46 Identities=15% Similarity=0.224 Sum_probs=34.0
Q ss_pred CCCEEEECCCCCCCC-CcchHHHHHHHh-CCCCcEEEEehhHHHHHHH
Q 027062 68 NPRGVLISPGPGAPQ-DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (229)
Q Consensus 68 ~~dgiii~GG~~~~~-~~~~~~~~i~~~-~~~~PvlGIC~G~Qlla~a 113 (229)
++|.|||+||.+... ....+.+++++. .++++|.|||-|.-+|+.+
T Consensus 75 ~~D~livpGg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~a 122 (322)
T PRK09393 75 RADTIVIPGWRGPDAPVPEPLLEALRAAHARGARLCSICSGVFVLAAA 122 (322)
T ss_pred CCCEEEECCCCcccccCCHHHHHHHHHHHHcCCEEEEEcHHHHHHHhc
Confidence 679999999865322 234456666653 4678999999999999885
No 150
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=93.61 E-value=0.27 Score=39.43 Aligned_cols=88 Identities=13% Similarity=0.195 Sum_probs=57.2
Q ss_pred cCCCceEEEEECC------CchhHHHHHHHHHcCCEEEEEeCCccCHHHHhcc--CCCEEEECCCCCCC--CC--cchHH
Q 027062 21 KNNKNPIIVIDNY------DSFTYNLCQYMGELGYHFEVYRNDELTVEELKRK--NPRGVLISPGPGAP--QD--SGISL 88 (229)
Q Consensus 21 ~~~~~~ilvid~~------~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~--~~dgiii~GG~~~~--~~--~~~~~ 88 (229)
+.+.++|++|-.. +-|.....++|+.+|+.+.-++....+.++++.. +-|+|.+.||.--. .. +.-..
T Consensus 29 ~g~~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~~d~IyVgGGNTF~LL~~lke~gld 108 (224)
T COG3340 29 QGKRKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKPPLAAIENKLMKADIIYVGGGNTFNLLQELKETGLD 108 (224)
T ss_pred cCCCceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCCCHHHHHHhhhhccEEEECCchHHHHHHHHHHhCcH
Confidence 3346789999442 2255667888999999998887665667777752 46999998885210 00 00013
Q ss_pred HHHH-HhCCCCcEEEEehhHH
Q 027062 89 QTVL-ELGPTVPLFGVCMGLQ 108 (229)
Q Consensus 89 ~~i~-~~~~~~PvlGIC~G~Q 108 (229)
+.|+ +..+++|.+|+-.|.-
T Consensus 109 ~iIr~~vk~G~~YiG~SAGA~ 129 (224)
T COG3340 109 DIIRERVKAGTPYIGWSAGAN 129 (224)
T ss_pred HHHHHHHHcCCceEEeccCce
Confidence 3444 3578899999987643
No 151
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=93.47 E-value=0.29 Score=34.18 Aligned_cols=77 Identities=21% Similarity=0.339 Sum_probs=52.5
Q ss_pred EEEEECCCchhHHHHHHHHHcCC-EEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEEEe
Q 027062 27 IIVIDNYDSFTYNLCQYMGELGY-HFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (229)
Q Consensus 27 ilvid~~~~~~~~~~~~l~~~g~-~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlGIC 104 (229)
|+|+|........+.++++..|+ .+............+....+|.+++--.... .+...+++.++....+.|++.++
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~iiid~~~~~-~~~~~~~~~i~~~~~~~~ii~~t 78 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKKHPPDLIIIDLELPD-GDGLELLEQIRQINPSIPIIVVT 78 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHSTESEEEEESSSSS-SBHHHHHHHHHHHTTTSEEEEEE
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcccCceEEEEEeeecc-ccccccccccccccccccEEEec
Confidence 68999866677889999999998 6665553322233445557888888643322 23345677777777789999888
No 152
>PLN02929 NADH kinase
Probab=93.38 E-value=0.21 Score=42.38 Aligned_cols=61 Identities=20% Similarity=0.261 Sum_probs=43.0
Q ss_pred hHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEEEehh
Q 027062 37 TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMG 106 (229)
Q Consensus 37 ~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlGIC~G 106 (229)
...+.++|++.|+++..+...+. .+.+. ++|.+|..||-|+ ++...+.+..++||+||-.|
T Consensus 36 ~~~~~~~L~~~gi~~~~v~r~~~-~~~~~--~~Dlvi~lGGDGT------~L~aa~~~~~~iPvlGIN~G 96 (301)
T PLN02929 36 VNFCKDILQQKSVDWECVLRNEL-SQPIR--DVDLVVAVGGDGT------LLQASHFLDDSIPVLGVNSD 96 (301)
T ss_pred HHHHHHHHHHcCCEEEEeecccc-ccccC--CCCEEEEECCcHH------HHHHHHHcCCCCcEEEEECC
Confidence 34577889999999976543222 11122 5799999999764 55665556667999999998
No 153
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=93.34 E-value=0.44 Score=39.47 Aligned_cols=89 Identities=15% Similarity=0.210 Sum_probs=56.6
Q ss_pred CCceEEEEECCCc----hhHHHHHHHHHcCCE-EEEEeCCc---c-CH---HHHhccCCCEEEECCCCCCC----CCcch
Q 027062 23 NKNPIIVIDNYDS----FTYNLCQYMGELGYH-FEVYRNDE---L-TV---EELKRKNPRGVLISPGPGAP----QDSGI 86 (229)
Q Consensus 23 ~~~~ilvid~~~~----~~~~~~~~l~~~g~~-~~v~~~~~---~-~~---~~l~~~~~dgiii~GG~~~~----~~~~~ 86 (229)
...||+||-..+. +...+.++++++|++ +.++.... . +. +.+. +.|+|+++||.... .....
T Consensus 27 ~~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~--~ad~I~~~GGnq~~l~~~l~~t~ 104 (250)
T TIGR02069 27 EDAIIVIITSASEEPREVGERYITIFSRLGVKEVKILDVREREDASDENAIALLS--NATGIFFTGGDQLRITSLLGDTP 104 (250)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHh--hCCEEEEeCCCHHHHHHHHcCCc
Confidence 3568999975433 345677888999984 66555421 1 11 1233 56999999996431 12222
Q ss_pred HHHHHH-HhCCCCcEEEEehhHHHHHHH
Q 027062 87 SLQTVL-ELGPTVPLFGVCMGLQCIGEA 113 (229)
Q Consensus 87 ~~~~i~-~~~~~~PvlGIC~G~Qlla~a 113 (229)
....++ .+.++.|+.|+--|.-+|+..
T Consensus 105 l~~~l~~~~~~G~vi~G~SAGA~i~~~~ 132 (250)
T TIGR02069 105 LLDRLRKRVHEGIILGGTSAGAAVMSDT 132 (250)
T ss_pred HHHHHHHHHHcCCeEEEccHHHHhcccc
Confidence 334454 356689999999999888654
No 154
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.27 E-value=0.59 Score=39.68 Aligned_cols=77 Identities=21% Similarity=0.233 Sum_probs=49.3
Q ss_pred CceEEEEECCCc-----hhHHHHHHHHHcCCEEEEEeCCc--c--------CHHHHhccCCCEEEECCCCCCCCCcchHH
Q 027062 24 KNPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRNDE--L--------TVEELKRKNPRGVLISPGPGAPQDSGISL 88 (229)
Q Consensus 24 ~~~ilvid~~~~-----~~~~~~~~l~~~g~~~~v~~~~~--~--------~~~~l~~~~~dgiii~GG~~~~~~~~~~~ 88 (229)
.++|+|+-+... ....+.++|++.|+++.+..... . ...++. ..+|.+|..||.|+ ++
T Consensus 4 ~~~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~-~~~d~vi~~GGDGt------~l 76 (295)
T PRK01231 4 FRNIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLG-EVCDLVIVVGGDGS------LL 76 (295)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcc-cCCCEEEEEeCcHH------HH
Confidence 345888866433 23467888989999988764210 0 011221 14789999999764 44
Q ss_pred HHHHHh-CCCCcEEEEehhH
Q 027062 89 QTVLEL-GPTVPLFGVCMGL 107 (229)
Q Consensus 89 ~~i~~~-~~~~PvlGIC~G~ 107 (229)
...+.+ ..++||+||-.|.
T Consensus 77 ~~~~~~~~~~~Pvlgin~G~ 96 (295)
T PRK01231 77 GAARALARHNVPVLGINRGR 96 (295)
T ss_pred HHHHHhcCCCCCEEEEeCCc
Confidence 555443 4679999999886
No 155
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=93.20 E-value=0.61 Score=37.65 Aligned_cols=89 Identities=17% Similarity=0.202 Sum_probs=57.1
Q ss_pred CCceEEEEECCC----chhHHHHHHHHHcCCE-EEEEeCCc----cCH---HHHhccCCCEEEECCCCCCCC----Ccch
Q 027062 23 NKNPIIVIDNYD----SFTYNLCQYMGELGYH-FEVYRNDE----LTV---EELKRKNPRGVLISPGPGAPQ----DSGI 86 (229)
Q Consensus 23 ~~~~ilvid~~~----~~~~~~~~~l~~~g~~-~~v~~~~~----~~~---~~l~~~~~dgiii~GG~~~~~----~~~~ 86 (229)
...+|++|...+ .+...+.+.++++|++ +..+..+. .+. +.+. +.|+|+++||..... ....
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~--~ad~I~~~GG~~~~~~~~l~~t~ 105 (217)
T cd03145 28 AGARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLR--DADGIFFTGGDQLRITSALGGTP 105 (217)
T ss_pred CCCcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHH--hCCEEEEeCCcHHHHHHHHcCCh
Confidence 467899998754 3456688888899985 45444321 111 2233 569999999864221 1112
Q ss_pred HHHHHHH-hCCCCcEEEEehhHHHHHHH
Q 027062 87 SLQTVLE-LGPTVPLFGVCMGLQCIGEA 113 (229)
Q Consensus 87 ~~~~i~~-~~~~~PvlGIC~G~Qlla~a 113 (229)
..+.+++ +.++.|+.|+--|.-+++..
T Consensus 106 l~~~l~~~~~~G~v~~G~SAGA~i~~~~ 133 (217)
T cd03145 106 LLDALRKVYRGGVVIGGTSAGAAVMSDT 133 (217)
T ss_pred HHHHHHHHHHcCCEEEEccHHHHhhhhc
Confidence 3344443 45789999999999998765
No 156
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.17 E-value=0.49 Score=40.34 Aligned_cols=76 Identities=16% Similarity=0.174 Sum_probs=49.3
Q ss_pred ceEEEEECCCc-----hhHHHHHHHHHcCCEEEEEeCCc-------------------cCHHHHhccCCCEEEECCCCCC
Q 027062 25 NPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRNDE-------------------LTVEELKRKNPRGVLISPGPGA 80 (229)
Q Consensus 25 ~~ilvid~~~~-----~~~~~~~~l~~~g~~~~v~~~~~-------------------~~~~~l~~~~~dgiii~GG~~~ 80 (229)
++|.|+-+.+. ....+.+||++.|+++.+..... .+..++.. ++|.+|..||-|+
T Consensus 2 ~~igiv~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dlvi~iGGDGT 80 (305)
T PRK02649 2 PKAGIIYNDGKPLAVRTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFDS-SMKFAIVLGGDGT 80 (305)
T ss_pred CEEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhccc-CcCEEEEEeCcHH
Confidence 45888866433 23567888999999987654210 00122221 4799999999764
Q ss_pred CCCcchHHHHHHHh-CCCCcEEEEehhH
Q 027062 81 PQDSGISLQTVLEL-GPTVPLFGVCMGL 107 (229)
Q Consensus 81 ~~~~~~~~~~i~~~-~~~~PvlGIC~G~ 107 (229)
+++..+.+ ..++|||||-.|.
T Consensus 81 ------lL~aar~~~~~~iPilGIN~G~ 102 (305)
T PRK02649 81 ------VLSAARQLAPCGIPLLTINTGH 102 (305)
T ss_pred ------HHHHHHHhcCCCCcEEEEeCCC
Confidence 56666654 4679999999883
No 157
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.08 E-value=0.58 Score=39.56 Aligned_cols=77 Identities=12% Similarity=0.090 Sum_probs=50.3
Q ss_pred CceEEEEECCCch----hHHHHHHHHHcCCEEEEEeCCc-------cCHHHHhccCCCEEEECCCCCCCCCcchHHHHHH
Q 027062 24 KNPIIVIDNYDSF----TYNLCQYMGELGYHFEVYRNDE-------LTVEELKRKNPRGVLISPGPGAPQDSGISLQTVL 92 (229)
Q Consensus 24 ~~~ilvid~~~~~----~~~~~~~l~~~g~~~~v~~~~~-------~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~ 92 (229)
.++|.|+-+.+.. ...+.+||++.|+++.+..... ...+++. .++|.+|..||.|. +++..+
T Consensus 10 ~~~i~ii~~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~Dlvi~iGGDGT------~L~aa~ 82 (287)
T PRK14077 10 IKKIGLVTRPNVSLDKEILKLQKILSIYKVEILLEKESAEILDLPGYGLDELF-KISDFLISLGGDGT------LISLCR 82 (287)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHHCCCEEEEecchhhhhcccccchhhcc-cCCCEEEEECCCHH------HHHHHH
Confidence 3458888664332 2456778888999888754210 0112222 15799999999764 566666
Q ss_pred Hh-CCCCcEEEEehhH
Q 027062 93 EL-GPTVPLFGVCMGL 107 (229)
Q Consensus 93 ~~-~~~~PvlGIC~G~ 107 (229)
.+ ..++|||||-.|.
T Consensus 83 ~~~~~~~PilGIN~G~ 98 (287)
T PRK14077 83 KAAEYDKFVLGIHAGH 98 (287)
T ss_pred HhcCCCCcEEEEeCCC
Confidence 54 3589999999997
No 158
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=92.78 E-value=0.98 Score=35.24 Aligned_cols=79 Identities=14% Similarity=0.136 Sum_probs=41.4
Q ss_pred ceEEEE-ECCCchhHHHHHHH----HHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHH---HhCC
Q 027062 25 NPIIVI-DNYDSFTYNLCQYM----GELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVL---ELGP 96 (229)
Q Consensus 25 ~~ilvi-d~~~~~~~~~~~~l----~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~---~~~~ 96 (229)
|+++|+ ....+.+..+++++ +. |.++.+++..+....++. +||.|||.++-..-.....+...+. ..-+
T Consensus 1 MkilIvY~S~~G~T~~iA~~Ia~~l~~-g~~v~~~~~~~~~~~~l~--~yD~vIlGspi~~G~~~~~~~~fl~~~~~~l~ 77 (177)
T PRK11104 1 MKTLILYSSRDGQTRKIASYIASELKE-GIQCDVVNLHRIEEPDLS--DYDRVVIGASIRYGHFHSALYKFVKKHATQLN 77 (177)
T ss_pred CcEEEEEECCCChHHHHHHHHHHHhCC-CCeEEEEEhhhcCccCHH--HCCEEEEECccccCCcCHHHHHHHHHHHHHhC
Confidence 455555 43445565555554 44 678887776543333444 5798776443221112223323332 2235
Q ss_pred CCcEEEEehh
Q 027062 97 TVPLFGVCMG 106 (229)
Q Consensus 97 ~~PvlGIC~G 106 (229)
++|+.-+|-|
T Consensus 78 ~K~v~~F~v~ 87 (177)
T PRK11104 78 QMPSAFFSVN 87 (177)
T ss_pred CCeEEEEEec
Confidence 6888777766
No 159
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=92.39 E-value=0.47 Score=39.65 Aligned_cols=64 Identities=28% Similarity=0.437 Sum_probs=43.0
Q ss_pred ceEEEEECCCch----hHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhC---CC
Q 027062 25 NPIIVIDNYDSF----TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELG---PT 97 (229)
Q Consensus 25 ~~ilvid~~~~~----~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~---~~ 97 (229)
|+|.|+-+...- ...+.++|++.|+++ + ..++|.+|..||.|+ +++..+.+. .+
T Consensus 1 M~i~Ii~~~~~~~~~~~~~l~~~l~~~g~~~-----~--------~~~~Dlvi~iGGDGT------~L~a~~~~~~~~~~ 61 (265)
T PRK04885 1 MKVAIISNGDPKSKRVASKLKKYLKDFGFIL-----D--------EKNPDIVISVGGDGT------LLSAFHRYENQLDK 61 (265)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHcCCcc-----C--------CcCCCEEEEECCcHH------HHHHHHHhcccCCC
Confidence 468888663222 234666777778762 1 015689999999764 566666543 48
Q ss_pred CcEEEEehhH
Q 027062 98 VPLFGVCMGL 107 (229)
Q Consensus 98 ~PvlGIC~G~ 107 (229)
+|++||-.|.
T Consensus 62 iPilGIN~G~ 71 (265)
T PRK04885 62 VRFVGVHTGH 71 (265)
T ss_pred CeEEEEeCCC
Confidence 9999999985
No 160
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=92.29 E-value=0.37 Score=35.39 Aligned_cols=43 Identities=23% Similarity=0.238 Sum_probs=27.4
Q ss_pred CCEEEECCCCCCCCCc--chHHHHHHHhCCCCcEEEEehhHHHHHHH
Q 027062 69 PRGVLISPGPGAPQDS--GISLQTVLELGPTVPLFGVCMGLQCIGEA 113 (229)
Q Consensus 69 ~dgiii~GG~~~~~~~--~~~~~~i~~~~~~~PvlGIC~G~Qlla~a 113 (229)
.|.+++.||-..|.-. ..-.+.+.+-..++|+.|+|+ |-|.+-
T Consensus 86 aDvvVLlGGLaMP~~gv~~d~~kel~ee~~~kkliGvCf--m~mF~r 130 (154)
T COG4090 86 ADVVVLLGGLAMPKIGVTPDDAKELLEELGNKKLIGVCF--MNMFER 130 (154)
T ss_pred ccEEEEEcccccCcCCCCHHHHHHHHHhcCCCceEEeeH--HHHHHH
Confidence 7999999997776432 222344444334569999995 444443
No 161
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=92.20 E-value=0.68 Score=38.47 Aligned_cols=70 Identities=13% Similarity=0.133 Sum_probs=46.6
Q ss_pred ceEEEEECCCc--hhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEE
Q 027062 25 NPIIVIDNYDS--FTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG 102 (229)
Q Consensus 25 ~~ilvid~~~~--~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlG 102 (229)
|++.|+...+. ....+.+++.+.|..+...... . + ...+.|.+|..||.|. +++..+.. ++||+|
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~---~-~~~~~d~vi~iGGDGT------~L~a~~~~--~~Pilg 67 (256)
T PRK14075 1 MKLGIFYREEKEKEAKFLKEKISKEHEVVEFCEAS-A---S-GKVTADLIIVVGGDGT------VLKAAKKV--GTPLVG 67 (256)
T ss_pred CEEEEEeCccHHHHHHHHHHHHHHcCCeeEeeccc-c---c-ccCCCCEEEEECCcHH------HHHHHHHc--CCCEEE
Confidence 57777755433 2355777888888876644322 1 1 1125699999999764 45666655 799999
Q ss_pred EehhH
Q 027062 103 VCMGL 107 (229)
Q Consensus 103 IC~G~ 107 (229)
|-.|.
T Consensus 68 in~G~ 72 (256)
T PRK14075 68 FKAGR 72 (256)
T ss_pred EeCCC
Confidence 99885
No 162
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=91.83 E-value=0.17 Score=38.55 Aligned_cols=73 Identities=8% Similarity=0.113 Sum_probs=43.5
Q ss_pred hHHHHHHHHHcCCEEEEEeCCccCHHHHhcc--CCCEEEECCCCCCCC----CcchHHHHHHH-hCCCCcEEEEehhHHH
Q 027062 37 TYNLCQYMGELGYHFEVYRNDELTVEELKRK--NPRGVLISPGPGAPQ----DSGISLQTVLE-LGPTVPLFGVCMGLQC 109 (229)
Q Consensus 37 ~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~--~~dgiii~GG~~~~~----~~~~~~~~i~~-~~~~~PvlGIC~G~Ql 109 (229)
...+.++++++|+++..+.....+.+++.+. +.|+|+|+||.-... ....+...+++ +.++.++.|+-.|.-+
T Consensus 2 ~~~~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~~ad~I~~~GG~~~~l~~~l~~t~l~~~i~~~~~~G~vi~G~SAGA~i 81 (154)
T PF03575_consen 2 VEKFRKAFRKLGFEVDQLDLSDRNDADILEAIREADAIFLGGGDTFRLLRQLKETGLDEAIREAYRKGGVIIGTSAGAMI 81 (154)
T ss_dssp HHHHHHHHHHCT-EEEECCCTSCGHHHHHHHHHHSSEEEE--S-HHHHHHHHHHTTHHHHHHHHHHTTSEEEEETHHHHC
T ss_pred HHHHHHHHHHCCCEEEEEeccCCChHHHHHHHHhCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCCEEEEEChHHhh
Confidence 4567889999999988887654333333221 569999999853211 01112344444 3567999999999855
No 163
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=91.38 E-value=0.3 Score=36.71 Aligned_cols=84 Identities=14% Similarity=0.218 Sum_probs=46.2
Q ss_pred cCCCceEEEEECCCch---hHHHHHHHHHcCCEEEEEeCCccCH--------------HHHhccCCCEEEECCCCCCCCC
Q 027062 21 KNNKNPIIVIDNYDSF---TYNLCQYMGELGYHFEVYRNDELTV--------------EELKRKNPRGVLISPGPGAPQD 83 (229)
Q Consensus 21 ~~~~~~ilvid~~~~~---~~~~~~~l~~~g~~~~v~~~~~~~~--------------~~l~~~~~dgiii~GG~~~~~~ 83 (229)
.....+|..+...+-+ ...+.-.+|+.+.+...++..+... .+..+.++|.|||.||-..|.-
T Consensus 16 ~~~~~kIvf~Gs~GvCtPFaeL~~Y~iR~~~~~~~FiP~~d~e~a~~l~~~~~Gmq~~~~~~~~~~D~vVlmGGLAMP~~ 95 (147)
T PF09897_consen 16 LKDGEKIVFIGSPGVCTPFAELFAYAIRDKVKEQYFIPDADLEKARKLEVTDIGMQVLGEKKDPHPDVVVLMGGLAMPKS 95 (147)
T ss_dssp -TT-SEEEEEE-TTTTHHHHHHHHHHTTTS--EEEEEETT-GGG-EEEEEETTEEE-EEEE--S-EEEEEEEGGGGSTTT
T ss_pred ccCCCeEEEeCCCcccccHHHHHHHHHhhhccceeecCCCChhhhheeeccCcccccccccCCCCCCEEEEEcccccCCC
Confidence 3556789999875443 3455556677777777777532111 1111225789999999666653
Q ss_pred ---cchHHHHHHHhCCCCcEEEEeh
Q 027062 84 ---SGISLQTVLELGPTVPLFGVCM 105 (229)
Q Consensus 84 ---~~~~~~~i~~~~~~~PvlGIC~ 105 (229)
.....+.+.++.. +.+.|||+
T Consensus 96 ~v~~e~v~~li~ki~~-~~iiGiCF 119 (147)
T PF09897_consen 96 GVTPEDVNELIKKISP-KKIIGICF 119 (147)
T ss_dssp S--HHHHHHHHHHHEE-EEEEEEEE
T ss_pred CCCHHHHHHHHHHhCc-CCEEEEeh
Confidence 3334445555532 34999996
No 164
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=91.09 E-value=0.65 Score=41.60 Aligned_cols=93 Identities=14% Similarity=0.166 Sum_probs=58.6
Q ss_pred ccccccccccCCCceEEEEECCCchhH-HHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCC-----CCCCc-
Q 027062 12 SLYLDDKKSKNNKNPIIVIDNYDSFTY-NLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG-----APQDS- 84 (229)
Q Consensus 12 ~~~~~~~~~~~~~~~ilvid~~~~~~~-~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~-----~~~~~- 84 (229)
+..++ +....+++|++|||....+.+ .+.+.|...|+.+.++.....+.--+ . -..|+.|+.. .++..
T Consensus 374 ~ill~-A~~~~k~frVvVVDSRP~~EG~~~lr~Lv~~GinctYv~I~a~syim~---e-vtkvfLGahailsNG~vysR~ 448 (556)
T KOG1467|consen 374 MILLE-AKELGKKFRVVVVDSRPNLEGRKLLRRLVDRGINCTYVLINAASYIML---E-VTKVFLGAHAILSNGAVYSRV 448 (556)
T ss_pred HHHHH-HHHhCcceEEEEEeCCCCcchHHHHHHHHHcCCCeEEEEehhHHHHHH---h-cceeeechhhhhcCcchhhhc
Confidence 33444 677888999999999888874 58899999999999887543222111 2 2345666532 22221
Q ss_pred chHHHHHHHhCCCCcEEEEehhHHH
Q 027062 85 GISLQTVLELGPTVPLFGVCMGLQC 109 (229)
Q Consensus 85 ~~~~~~i~~~~~~~PvlGIC~G~Ql 109 (229)
+...-.+.+...++|||-.|--+-.
T Consensus 449 GTa~valvAna~nVPVlVCCE~yKF 473 (556)
T KOG1467|consen 449 GTACVALVANAFNVPVLVCCEAYKF 473 (556)
T ss_pred chHHHHHHhcccCCCEEEEechhhh
Confidence 2222233345578999999965543
No 165
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=90.66 E-value=1.2 Score=32.95 Aligned_cols=60 Identities=27% Similarity=0.416 Sum_probs=34.5
Q ss_pred CchhHHHHHHHHHcCCEEEEEe--CCccC-H-HHHhc--cCCCEEEECCCCCCCCCcchHHHHHHHh
Q 027062 34 DSFTYNLCQYMGELGYHFEVYR--NDELT-V-EELKR--KNPRGVLISPGPGAPQDSGISLQTVLEL 94 (229)
Q Consensus 34 ~~~~~~~~~~l~~~g~~~~v~~--~~~~~-~-~~l~~--~~~dgiii~GG~~~~~~~~~~~~~i~~~ 94 (229)
+.....+..++++.|+++.... .|+.. . +.+.. .++|.||.+||.+ +...+...+.+.++
T Consensus 17 d~~~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~~~dliittGG~g-~g~~D~t~~~l~~~ 82 (135)
T smart00852 17 DSNGPALAELLTELGIEVTRYVIVPDDKEAIKEALREALERADLVITTGGTG-PGPDDVTPEAVAEA 82 (135)
T ss_pred cCcHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEcCCCC-CCCCcCcHHHHHHH
Confidence 4566778899999998765332 12211 1 12222 1589999999976 33334333444443
No 166
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=90.27 E-value=1.2 Score=37.41 Aligned_cols=73 Identities=15% Similarity=0.226 Sum_probs=43.8
Q ss_pred ceEEEEECCCc-h----hHHHHHHHHHcCCEEEEEeCCc--cC--HHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhC
Q 027062 25 NPIIVIDNYDS-F----TYNLCQYMGELGYHFEVYRNDE--LT--VEELKRKNPRGVLISPGPGAPQDSGISLQTVLELG 95 (229)
Q Consensus 25 ~~ilvid~~~~-~----~~~~~~~l~~~g~~~~v~~~~~--~~--~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~ 95 (229)
|+|+|+-+.+. . ...+.+|+ ..|+++.+..... .. ..+....++|.+|..||.|+ +++..+...
T Consensus 1 m~i~iv~~~~~~~~~~~~~~i~~~l-~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGGDGT------~L~a~~~~~ 73 (271)
T PRK01185 1 MKVAFVIRKDCKRCIKIAKSIIELL-PPDWEIIYEMEAAKALGMDGLDIEEINADVIITIGGDGT------ILRTLQRAK 73 (271)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHH-hcCCEEEEechhhhhcCcccCcccccCCCEEEEEcCcHH------HHHHHHHcC
Confidence 56888865433 1 24466777 4688776543210 00 00112226799999999875 455555554
Q ss_pred CCCcEEEEehh
Q 027062 96 PTVPLFGVCMG 106 (229)
Q Consensus 96 ~~~PvlGIC~G 106 (229)
.||+||-.|
T Consensus 74 --~PilGIN~G 82 (271)
T PRK01185 74 --GPILGINMG 82 (271)
T ss_pred --CCEEEEECC
Confidence 599999998
No 167
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.73 E-value=1.9 Score=36.81 Aligned_cols=76 Identities=12% Similarity=0.105 Sum_probs=46.5
Q ss_pred CceEEEEECCCc-h----hHHHHHHHHHcCCEEEEEeCCcc--CHH---HHhccCCCEEEECCCCCCCCCcchHHHHHHH
Q 027062 24 KNPIIVIDNYDS-F----TYNLCQYMGELGYHFEVYRNDEL--TVE---ELKRKNPRGVLISPGPGAPQDSGISLQTVLE 93 (229)
Q Consensus 24 ~~~ilvid~~~~-~----~~~~~~~l~~~g~~~~v~~~~~~--~~~---~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~ 93 (229)
.+++++|-+.+. . ...+.++|++.|+++.+...... ... .....++|.+|..||.|+ +++.++.
T Consensus 3 ~kkv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGT------~l~~~~~ 76 (305)
T PRK02645 3 LKQVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIVLGGDGT------VLAAARH 76 (305)
T ss_pred cCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEEECCcHH------HHHHHHH
Confidence 345777755332 1 23467788889999887653210 000 111125799999999775 4455554
Q ss_pred h-CCCCcEEEEeh
Q 027062 94 L-GPTVPLFGVCM 105 (229)
Q Consensus 94 ~-~~~~PvlGIC~ 105 (229)
+ ..++|++||=.
T Consensus 77 ~~~~~~pv~gin~ 89 (305)
T PRK02645 77 LAPHDIPILSVNV 89 (305)
T ss_pred hccCCCCEEEEec
Confidence 3 46799999998
No 168
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=89.63 E-value=0.74 Score=32.93 Aligned_cols=75 Identities=17% Similarity=0.217 Sum_probs=47.1
Q ss_pred eEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEEE
Q 027062 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 103 (229)
Q Consensus 26 ~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlGI 103 (229)
||+|||....-...+.-.|+=.|.+++.+...+.. ........++++|..|... .....++.+.+.....|++=+
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~~-~~~~~~~~~~~~v~~g~~~--~~~~~l~~l~~~~~~~Pvlll 75 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDWS-QADWSSPWEACAVILGSCS--KLAELLKELLKWAPHIPVLLL 75 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHHH-HhhhhcCCcEEEEEecCch--hHHHHHHHHHhhCCCCCEEEE
Confidence 69999975555567777788889999888753221 1222234577766665544 223345566666677898753
No 169
>PLN02727 NAD kinase
Probab=89.40 E-value=1.5 Score=42.62 Aligned_cols=80 Identities=13% Similarity=0.177 Sum_probs=50.9
Q ss_pred cCCCceEEEEECCCch----hHHHHHHHHHc-CCEEEEEeCCcc-----------------CHHHHhccCCCEEEECCCC
Q 027062 21 KNNKNPIIVIDNYDSF----TYNLCQYMGEL-GYHFEVYRNDEL-----------------TVEELKRKNPRGVLISPGP 78 (229)
Q Consensus 21 ~~~~~~ilvid~~~~~----~~~~~~~l~~~-g~~~~v~~~~~~-----------------~~~~l~~~~~dgiii~GG~ 78 (229)
.....+|+||-....- ...+.+||.+. |+++.+-..... ...++. .++|.+|..||.
T Consensus 675 ~~p~rtVgIV~K~~~ea~~~~~eL~~~L~~~~gi~V~VE~~~a~~l~~~~~~~~~~~~~~~~~~el~-~~~DLVIvLGGD 753 (986)
T PLN02727 675 KSTPKTVLLLKKLGQELMEEAKEVASFLYHQEKMNVLVEPDVHDIFARIPGFGFVQTFYSQDTSDLH-ERVDFVACLGGD 753 (986)
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHHHHhCCCeEEEEecchHHHhhccccccccceecccchhhcc-cCCCEEEEECCc
Confidence 3345679999765442 23478889887 888875432100 001221 157999999997
Q ss_pred CCCCCcchHHHHHHHh-CCCCcEEEEehhH
Q 027062 79 GAPQDSGISLQTVLEL-GPTVPLFGVCMGL 107 (229)
Q Consensus 79 ~~~~~~~~~~~~i~~~-~~~~PvlGIC~G~ 107 (229)
|+ ++...+.+ ...+|||||=+|.
T Consensus 754 GT------lLrAar~~~~~~iPILGINlGr 777 (986)
T PLN02727 754 GV------ILHASNLFRGAVPPVVSFNLGS 777 (986)
T ss_pred HH------HHHHHHHhcCCCCCEEEEeCCC
Confidence 64 55655553 3579999999985
No 170
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.30 E-value=1.5 Score=40.75 Aligned_cols=78 Identities=14% Similarity=0.322 Sum_probs=51.0
Q ss_pred CCCceEEEEECCCc-----hhHHHHHHHHHcCCEEEEEeCCc--cC---------HHHHhccCCCEEEECCCCCCCCCcc
Q 027062 22 NNKNPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRNDE--LT---------VEELKRKNPRGVLISPGPGAPQDSG 85 (229)
Q Consensus 22 ~~~~~ilvid~~~~-----~~~~~~~~l~~~g~~~~v~~~~~--~~---------~~~l~~~~~dgiii~GG~~~~~~~~ 85 (229)
...++|+|+-+... ....+.+||++.|+++.+..... .. ..++. ++|.+|..||-|+
T Consensus 288 ~~~~~i~iv~~~~~~~~~~~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlvi~lGGDGT----- 360 (569)
T PRK14076 288 IKPTKFGIVSRIDNEEAINLALKIIKYLDSKGIPYELESFLYNKLKNRLNEECNLIDDIE--EISHIISIGGDGT----- 360 (569)
T ss_pred cCCcEEEEEcCCCCHHHHHHHHHHHHHHHHCCCEEEEechhhhhhccccccccccccccc--CCCEEEEECCcHH-----
Confidence 34577999866433 23457788888999887754210 00 01111 5799999999764
Q ss_pred hHHHHHHHhC-CCCcEEEEehhH
Q 027062 86 ISLQTVLELG-PTVPLFGVCMGL 107 (229)
Q Consensus 86 ~~~~~i~~~~-~~~PvlGIC~G~ 107 (229)
+++..+.+. .++|||||-.|.
T Consensus 361 -~L~aa~~~~~~~~PilGin~G~ 382 (569)
T PRK14076 361 -VLRASKLVNGEEIPIICINMGT 382 (569)
T ss_pred -HHHHHHHhcCCCCCEEEEcCCC
Confidence 566666543 579999999885
No 171
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.25 E-value=1.5 Score=36.86 Aligned_cols=62 Identities=27% Similarity=0.445 Sum_probs=42.0
Q ss_pred HHHHHHHHHcCCEEEEEeCCc----c------CHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHh-CCCCcEEEEehh
Q 027062 38 YNLCQYMGELGYHFEVYRNDE----L------TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMG 106 (229)
Q Consensus 38 ~~~~~~l~~~g~~~~v~~~~~----~------~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~-~~~~PvlGIC~G 106 (229)
..+.+||++.|+++.+..... . +.+++.. ++|.+|..||.|+ +++..+.+ ..++|||||-.|
T Consensus 3 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~vi~iGGDGT------~L~aa~~~~~~~~PilgIn~G 75 (272)
T PRK02231 3 KNLFHWLKERGYQVLVEKEIAEQLNLPENHLASLEEIGQ-RAQLAIVIGGDGN------MLGRARVLAKYDIPLIGINRG 75 (272)
T ss_pred HHHHHHHHHCCCEEEEecchhhhcCccccccCChHHhCc-CCCEEEEECCcHH------HHHHHHHhccCCCcEEEEeCC
Confidence 356788999999888754210 0 1122222 5799999999764 56666654 457999999988
No 172
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=88.57 E-value=1.1 Score=37.19 Aligned_cols=66 Identities=9% Similarity=0.032 Sum_probs=41.1
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHh-CCCCcEEEE
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV 103 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~-~~~~PvlGI 103 (229)
||..++...+.....+.+.|++.=-.. .. .+.++|.+|..||.|. +++.++.+ ..++||+||
T Consensus 1 ~~~~i~~~~~~~s~~~~~~l~~~~~~~---~~--------~~~~~D~vi~iGGDGT------~L~a~~~~~~~~iPilGI 63 (259)
T PRK00561 1 MKYKIFASTTPQTEPVLPKLKKVLKKK---LA--------VEDGADYLFVLGGDGF------FVSTAANYNCAGCKVVGI 63 (259)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHhhC---CC--------ccCCCCEEEEECCcHH------HHHHHHHhcCCCCcEEEE
Confidence 467888876665555555554310000 00 1125699999999764 56666654 467999999
Q ss_pred ehhH
Q 027062 104 CMGL 107 (229)
Q Consensus 104 C~G~ 107 (229)
-.|.
T Consensus 64 N~G~ 67 (259)
T PRK00561 64 NTGH 67 (259)
T ss_pred ecCC
Confidence 9884
No 173
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=87.70 E-value=2.8 Score=38.15 Aligned_cols=78 Identities=18% Similarity=0.292 Sum_probs=48.4
Q ss_pred CceEEEEECCCc-----hhHHHHHHHH-HcCCEEEEEeCCc--c--------------CHHHHh--ccCCCEEEECCCCC
Q 027062 24 KNPIIVIDNYDS-----FTYNLCQYMG-ELGYHFEVYRNDE--L--------------TVEELK--RKNPRGVLISPGPG 79 (229)
Q Consensus 24 ~~~ilvid~~~~-----~~~~~~~~l~-~~g~~~~v~~~~~--~--------------~~~~l~--~~~~dgiii~GG~~ 79 (229)
.++|+||-+... ....+.+||+ ..|+++.+..... . +..++. ..++|.+|..||.|
T Consensus 194 p~~VgIV~n~~k~~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIsiGGDG 273 (508)
T PLN02935 194 PQTVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLHTKVDLVITLGGDG 273 (508)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcccCCCEEEEECCcH
Confidence 567888866433 2345778888 4788887643210 0 001111 12579999999976
Q ss_pred CCCCcchHHHHHHHhC-CCCcEEEEehhH
Q 027062 80 APQDSGISLQTVLELG-PTVPLFGVCMGL 107 (229)
Q Consensus 80 ~~~~~~~~~~~i~~~~-~~~PvlGIC~G~ 107 (229)
+ ++...+.+. ..+|||||=+|.
T Consensus 274 T------lL~Aar~~~~~~iPILGIN~G~ 296 (508)
T PLN02935 274 T------VLWAASMFKGPVPPVVPFSMGS 296 (508)
T ss_pred H------HHHHHHHhccCCCcEEEEeCCC
Confidence 4 556655543 568999999773
No 174
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=86.72 E-value=5.8 Score=35.46 Aligned_cols=51 Identities=16% Similarity=-0.009 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHcCCEEEEEeCCccCHHH----Hhc--cCCCEEEECCCCCCCCCcchH
Q 027062 36 FTYNLCQYMGELGYHFEVYRNDELTVEE----LKR--KNPRGVLISPGPGAPQDSGIS 87 (229)
Q Consensus 36 ~~~~~~~~l~~~g~~~~v~~~~~~~~~~----l~~--~~~dgiii~GG~~~~~~~~~~ 87 (229)
....+..++++.|+++.....-..+.+. +.. .++|.||++||.+ ..+.+..
T Consensus 221 N~~~L~a~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlIItTGG~S-~G~~D~v 277 (419)
T PRK14690 221 NRPMLLALARRWGHAPVDLGRVGDDRAALAARLDRAAAEADVILTSGGAS-AGDEDHV 277 (419)
T ss_pred HHHHHHHHHHHCCCEEEEEeeeCCCHHHHHHHHHHhCccCCEEEEcCCcc-CCCcchH
Confidence 3456888899999988744321112222 222 1589999998854 3433333
No 175
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=86.26 E-value=1.3 Score=37.28 Aligned_cols=76 Identities=20% Similarity=0.354 Sum_probs=46.5
Q ss_pred eEEEEECCCc-----hhHHHHHHHHHc-CCEEEEEeC------C---------------------ccCHHHHhccCCCEE
Q 027062 26 PIIVIDNYDS-----FTYNLCQYMGEL-GYHFEVYRN------D---------------------ELTVEELKRKNPRGV 72 (229)
Q Consensus 26 ~ilvid~~~~-----~~~~~~~~l~~~-g~~~~v~~~------~---------------------~~~~~~l~~~~~dgi 72 (229)
||.||-+... ....+.++|.+. +..+.+-.. . .....+....++|.+
T Consensus 1 kVgii~np~~~~~~~~~~~~~~~L~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~i 80 (285)
T PF01513_consen 1 KVGIIANPNKPEAIELANELARWLLEKQGIEVLVEGSIAEDILEAIKKRYEVISVEKKLKTLDDTRNALEEMLEEGVDLI 80 (285)
T ss_dssp -EEEEESSCGHCCCHHHHHHHHHHHHTTTEEEEEEHHHHHSHCCCSHSCCCCCTTSHCCCCTCEEEECCHHHHCCCSSEE
T ss_pred CEEEEEcCCCHHHHHHHHHHHHHHHhCCCEEEEEChHHHHHHHHhccccccccccccccccccccchhhhhhcccCCCEE
Confidence 4667765432 245688899888 665554321 0 011233334478999
Q ss_pred EECCCCCCCCCcchHHHHHHHhC-CCCcEEEEehhH
Q 027062 73 LISPGPGAPQDSGISLQTVLELG-PTVPLFGVCMGL 107 (229)
Q Consensus 73 ii~GG~~~~~~~~~~~~~i~~~~-~~~PvlGIC~G~ 107 (229)
|+.||.|. ++...+... .++||+||=.|.
T Consensus 81 i~lGGDGT------~L~~~~~~~~~~~Pilgin~G~ 110 (285)
T PF01513_consen 81 IVLGGDGT------FLRAARLFGDYDIPILGINTGT 110 (285)
T ss_dssp EEEESHHH------HHHHHHHCTTST-EEEEEESSS
T ss_pred EEECCCHH------HHHHHHHhccCCCcEEeecCCC
Confidence 99999653 556666654 489999999874
No 176
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=86.07 E-value=6.1 Score=31.44 Aligned_cols=81 Identities=16% Similarity=0.185 Sum_probs=49.6
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCc-chHHHHHHHhCCCCcEE
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLF 101 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~-~~~~~~i~~~~~~~Pvl 101 (229)
...+|++++........+...|+..|.++..........+.+....+|.+|+--. .+... -.+.+.++......|++
T Consensus 4 ~~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~--l~~~~g~~~~~~lr~~~~~~pii 81 (239)
T PRK09468 4 ENYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTRESFHLMVLDLM--LPGEDGLSICRRLRSQNNPTPII 81 (239)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhcCCCCCEE
Confidence 4568999997666677788889999998876543211112233336788776322 12222 23455565554578998
Q ss_pred EEeh
Q 027062 102 GVCM 105 (229)
Q Consensus 102 GIC~ 105 (229)
-++-
T Consensus 82 ~ls~ 85 (239)
T PRK09468 82 MLTA 85 (239)
T ss_pred EEEC
Confidence 8864
No 177
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=85.25 E-value=6.3 Score=29.51 Aligned_cols=60 Identities=22% Similarity=0.255 Sum_probs=35.1
Q ss_pred CchhHHHHHHHHHcCCEEEEEeCCccCHHHH----hcc--CCCEEEECCCCCCCCCcchHHHHHHHh
Q 027062 34 DSFTYNLCQYMGELGYHFEVYRNDELTVEEL----KRK--NPRGVLISPGPGAPQDSGISLQTVLEL 94 (229)
Q Consensus 34 ~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l----~~~--~~dgiii~GG~~~~~~~~~~~~~i~~~ 94 (229)
++....+..+|++.|+++.....-..+.+++ ... ++|.||.+||.+. ...+...+.+.++
T Consensus 26 d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliIttGG~g~-g~~D~t~~ai~~~ 91 (144)
T TIGR00177 26 DSNGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDEADVVLTTGGTGV-GPRDVTPEALEEL 91 (144)
T ss_pred eCcHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEECCCCCC-CCCccHHHHHHHh
Confidence 3556678889999999887554211122222 221 6899999998653 3334433444443
No 178
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=84.80 E-value=4.8 Score=36.38 Aligned_cols=80 Identities=19% Similarity=0.141 Sum_probs=48.8
Q ss_pred CCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCc-chHHHHHHHhCCCCcE
Q 027062 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPL 100 (229)
Q Consensus 22 ~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~-~~~~~~i~~~~~~~Pv 100 (229)
+.+.+|+|||-..+....+...|+..|+.+..........+-+....+|.| |+-= ..+... -.+++.+.+...+.||
T Consensus 2 ~~~~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~~~~lv-l~Di-~mp~~~Gl~ll~~i~~~~~~~pV 79 (464)
T COG2204 2 MMMARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSESPFDLV-LLDI-RMPGMDGLELLKEIKSRDPDLPV 79 (464)
T ss_pred CCcCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEE-EEec-CCCCCchHHHHHHHHhhCCCCCE
Confidence 345579999976667788999999999999877643222233333334444 4321 222222 2355666666666777
Q ss_pred EEE
Q 027062 101 FGV 103 (229)
Q Consensus 101 lGI 103 (229)
+-+
T Consensus 80 I~~ 82 (464)
T COG2204 80 IVM 82 (464)
T ss_pred EEE
Confidence 654
No 179
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=84.70 E-value=4.6 Score=33.70 Aligned_cols=64 Identities=20% Similarity=0.200 Sum_probs=43.2
Q ss_pred eEEEEECCCch----hHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhC--CCCc
Q 027062 26 PIIVIDNYDSF----TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELG--PTVP 99 (229)
Q Consensus 26 ~ilvid~~~~~----~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~--~~~P 99 (229)
+|.++-+.... ...+.+||++.|+++.... . ++|.+|..||.|. +++..+... .++|
T Consensus 4 ~i~iv~~~~~~a~~~~~~l~~~l~~~g~~~~~~~---------~--~~D~vi~lGGDGT------~L~a~~~~~~~~~~p 66 (264)
T PRK03501 4 NLFFFYKRDKELVEKVKPLKKIAEEYGFTVVDHP---------K--NANIIVSIGGDGT------FLQAVRKTGFREDCL 66 (264)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHCCCEEEcCC---------C--CccEEEEECCcHH------HHHHHHHhcccCCCe
Confidence 67777654332 2346778888898776321 1 4589999999764 566666543 2689
Q ss_pred EEEEeh-h
Q 027062 100 LFGVCM-G 106 (229)
Q Consensus 100 vlGIC~-G 106 (229)
++||-. |
T Consensus 67 ilgIn~~G 74 (264)
T PRK03501 67 YAGISTKD 74 (264)
T ss_pred EEeEecCC
Confidence 999999 7
No 180
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=84.59 E-value=5.4 Score=29.38 Aligned_cols=60 Identities=18% Similarity=0.164 Sum_probs=34.7
Q ss_pred CchhHHHHHHHHHcCCEEEEEeCCccCHHH----Hhcc--CCCEEEECCCCCCCCCcchHHHHHHHh
Q 027062 34 DSFTYNLCQYMGELGYHFEVYRNDELTVEE----LKRK--NPRGVLISPGPGAPQDSGISLQTVLEL 94 (229)
Q Consensus 34 ~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~----l~~~--~~dgiii~GG~~~~~~~~~~~~~i~~~ 94 (229)
++....+..++++.|.++.....-..+.++ +... ++|.||.+||.+ +...+...+.+.++
T Consensus 18 d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DlvittGG~g-~g~~D~t~~ai~~~ 83 (133)
T cd00758 18 DTNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTTGGTG-VGRRDVTPEALAEL 83 (133)
T ss_pred EchHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEECCCCC-CCCCcchHHHHHHh
Confidence 345667888899999988655321112222 2221 489999999855 33334444445444
No 181
>CHL00148 orf27 Ycf27; Reviewed
Probab=84.50 E-value=8.3 Score=30.50 Aligned_cols=81 Identities=20% Similarity=0.285 Sum_probs=47.4
Q ss_pred CCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCCCcE
Q 027062 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPL 100 (229)
Q Consensus 22 ~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~-~~~~~i~~~~~~~Pv 100 (229)
...++|+++|........+...++..|..+............+....+|.+++--.. +...+ ...+.+++. ...|+
T Consensus 4 ~~~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~~~~d~illd~~~--~~~~g~~~~~~l~~~-~~~~i 80 (240)
T CHL00148 4 NSKEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRKEQPDLVILDVMM--PKLDGYGVCQEIRKE-SDVPI 80 (240)
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhcCCCEEEEeCCC--CCCCHHHHHHHHHhc-CCCcE
Confidence 346789999976666777888888888877544321111122333367888774221 11122 334455443 46899
Q ss_pred EEEeh
Q 027062 101 FGVCM 105 (229)
Q Consensus 101 lGIC~ 105 (229)
+-++-
T Consensus 81 i~ls~ 85 (240)
T CHL00148 81 IMLTA 85 (240)
T ss_pred EEEEC
Confidence 88863
No 182
>PRK15029 arginine decarboxylase; Provisional
Probab=84.19 E-value=5.7 Score=38.23 Aligned_cols=78 Identities=9% Similarity=0.027 Sum_probs=49.7
Q ss_pred ceEEEEECCCc--------hhHHHHHHHHHcCCEEEEEeCCccCHHHHhc-cCCCEEEECCCCCCCCCcc-----hHHHH
Q 027062 25 NPIIVIDNYDS--------FTYNLCQYMGELGYHFEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDSG-----ISLQT 90 (229)
Q Consensus 25 ~~ilvid~~~~--------~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~-~~~dgiii~GG~~~~~~~~-----~~~~~ 90 (229)
|+|+|||.... ....+.+.|+..|+++............+.. .++|.||+== ..+...+ .+++.
T Consensus 1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~~~~DlVLLD~--~LPd~dG~~~~~ell~~ 78 (755)
T PRK15029 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSY--QMEHPDEHQNVRQLIGK 78 (755)
T ss_pred CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCcEEEEEC--CCCCCccchhHHHHHHH
Confidence 47999986432 3667889999999999877653223334444 3689988831 1222222 45666
Q ss_pred HHHhCCCCcEEEEe
Q 027062 91 VLELGPTVPLFGVC 104 (229)
Q Consensus 91 i~~~~~~~PvlGIC 104 (229)
+++...++||+-+.
T Consensus 79 IR~~~~~iPIIlLT 92 (755)
T PRK15029 79 LHERQQNVPVFLLG 92 (755)
T ss_pred HHhhCCCCCEEEEE
Confidence 77655578888775
No 183
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=84.14 E-value=15 Score=28.27 Aligned_cols=47 Identities=19% Similarity=0.249 Sum_probs=29.7
Q ss_pred CCchhHHHHHHHHHcCCEEEEEeC--CccC--HHHHhc----cCCCEEEECCCCC
Q 027062 33 YDSFTYNLCQYMGELGYHFEVYRN--DELT--VEELKR----KNPRGVLISPGPG 79 (229)
Q Consensus 33 ~~~~~~~~~~~l~~~g~~~~v~~~--~~~~--~~~l~~----~~~dgiii~GG~~ 79 (229)
+++....+..+|++.|+++..+.. |+.. .+.+.+ .++|.||++||.+
T Consensus 20 ~d~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg 74 (163)
T TIGR02667 20 DDTSGQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTG 74 (163)
T ss_pred CCCcHHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 345566788899999998875432 2211 112222 2589999999865
No 184
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=83.90 E-value=2.3 Score=28.64 Aligned_cols=46 Identities=20% Similarity=0.317 Sum_probs=31.9
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCC
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGA 80 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~ 80 (229)
+||+|=+. ..++.++|++.|++++.+... .++. ++|++|++|-..+
T Consensus 2 kkIAVE~~----Ls~v~~~L~~~GyeVv~l~~~----~~~~--~~daiVvtG~~~n 47 (80)
T PF03698_consen 2 KKIAVEEG----LSNVKEALREKGYEVVDLENE----QDLQ--NVDAIVVTGQDTN 47 (80)
T ss_pred CeEEecCC----chHHHHHHHHCCCEEEecCCc----cccC--CcCEEEEECCCcc
Confidence 35555442 237889999999999877643 1222 6899999997543
No 185
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=83.84 E-value=7.7 Score=30.45 Aligned_cols=79 Identities=11% Similarity=0.209 Sum_probs=47.3
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCCCcEEEE
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV 103 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~-~~~~~i~~~~~~~PvlGI 103 (229)
|+|++++........+...|+..|..+............+....+|.+++--. .+...+ ...+.+++.....|++-+
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~~~dlvild~~--l~~~~g~~l~~~lr~~~~~~pii~l 78 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEHLPDIAIVDLG--LPDEDGLSLIRRWRSNDVSLPILVL 78 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhCCCCEEEEECC--CCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 47999997666677788889999988775543211122233346888776321 222222 334555554457898877
Q ss_pred eh
Q 027062 104 CM 105 (229)
Q Consensus 104 C~ 105 (229)
.-
T Consensus 79 s~ 80 (223)
T PRK10816 79 TA 80 (223)
T ss_pred Ec
Confidence 53
No 186
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=83.32 E-value=8.5 Score=29.90 Aligned_cols=79 Identities=14% Similarity=0.156 Sum_probs=46.9
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEEEe
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlGIC 104 (229)
|+|+++|........+...|+..|.++............+....+|.+++--.... .+.-.+.+.++......|++-+.
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvild~~l~~-~~g~~~~~~i~~~~~~~~ii~lt 79 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPG-MDGRDILREWREKGQREPVLILT 79 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEECCCCC-CCHHHHHHHHHhcCCCCcEEEEE
Confidence 47999997656677788889888888765432211122233336788777432111 12223455666555668888775
No 187
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=83.12 E-value=4.2 Score=36.12 Aligned_cols=69 Identities=17% Similarity=0.141 Sum_probs=41.5
Q ss_pred CCceEEEEECC----------------CchhHHHHHHHHHcCCEEEEEeCCccCHHHH----hc--cCCCEEEECCCCCC
Q 027062 23 NKNPIIVIDNY----------------DSFTYNLCQYMGELGYHFEVYRNDELTVEEL----KR--KNPRGVLISPGPGA 80 (229)
Q Consensus 23 ~~~~ilvid~~----------------~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l----~~--~~~dgiii~GG~~~ 80 (229)
.++||.||-.+ ++....+..+++++|.++.....-..+.+++ .+ .++|.||++||.+
T Consensus 175 rkprV~IisTGdELv~~~~~l~~gqI~dsN~~~l~a~l~~~G~e~~~~giv~Dd~~~l~~~i~~a~~~~DviItsGG~S- 253 (404)
T COG0303 175 RKPRVAIISTGDELVEPGQPLEPGQIYDSNSYMLAALLERAGGEVVDLGIVPDDPEALREAIEKALSEADVIITSGGVS- 253 (404)
T ss_pred cCCEEEEEecCccccCCCCCCCCCeEEecCHHHHHHHHHHcCCceeeccccCCCHHHHHHHHHHhhhcCCEEEEeCCcc-
Confidence 35678888543 3344568888999999777554321122332 22 1589999999864
Q ss_pred CCCcchHHHHHH
Q 027062 81 PQDSGISLQTVL 92 (229)
Q Consensus 81 ~~~~~~~~~~i~ 92 (229)
+.+.+...+.+.
T Consensus 254 vG~~D~v~~~l~ 265 (404)
T COG0303 254 VGDADYVKAALE 265 (404)
T ss_pred CcchHhHHHHHH
Confidence 445444444555
No 188
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=81.82 E-value=5.7 Score=30.04 Aligned_cols=59 Identities=17% Similarity=0.160 Sum_probs=33.7
Q ss_pred CchhHHHHHHHHHcCCEEEEEeCCccCHHH----Hhc--c--CCCEEEECCCCCCCCCcchHHHHHHH
Q 027062 34 DSFTYNLCQYMGELGYHFEVYRNDELTVEE----LKR--K--NPRGVLISPGPGAPQDSGISLQTVLE 93 (229)
Q Consensus 34 ~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~----l~~--~--~~dgiii~GG~~~~~~~~~~~~~i~~ 93 (229)
++....+.+++++.|+++.....-..+.++ +.. . .+|.||.+||.+ +.+.+...+.+.+
T Consensus 19 d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s-~g~~D~t~~al~~ 85 (152)
T cd00886 19 DRSGPALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTG-LAPRDVTPEATRP 85 (152)
T ss_pred cchHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcC-CCCCcCcHHHHHH
Confidence 445567888999999987655321112222 221 1 579999998854 3333433344443
No 189
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=81.75 E-value=12 Score=29.05 Aligned_cols=79 Identities=22% Similarity=0.234 Sum_probs=43.8
Q ss_pred chhHHHHHHHHHcCCEEEEEe--CCccC--HHHHhc--cCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEEEehhHH
Q 027062 35 SFTYNLCQYMGELGYHFEVYR--NDELT--VEELKR--KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQ 108 (229)
Q Consensus 35 ~~~~~~~~~l~~~g~~~~v~~--~~~~~--~~~l~~--~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlGIC~G~Q 108 (229)
+....+.++|++.|+++.... .|+.. .+.+.. ..+|.||.+||-+- ..++...+.+.+.- ++|+.+.=--.+
T Consensus 19 ~n~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~dlVIttGG~G~-t~~D~t~ea~~~~~-~~~l~~~~e~~~ 96 (170)
T cd00885 19 TNAAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRASERADLVITTGGLGP-THDDLTREAVAKAF-GRPLVLDEEALE 96 (170)
T ss_pred hHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCEEEECCCCCC-CCCChHHHHHHHHh-CCCcccCHHHHH
Confidence 455678899999999876433 22111 112222 15799999998653 33333334444321 356666555555
Q ss_pred HHHHHhC
Q 027062 109 CIGEAFG 115 (229)
Q Consensus 109 lla~alG 115 (229)
.|-..+.
T Consensus 97 ~i~~~~~ 103 (170)
T cd00885 97 RIEARFA 103 (170)
T ss_pred HHHHHHH
Confidence 5555543
No 190
>PLN03029 type-a response regulator protein; Provisional
Probab=81.57 E-value=9.5 Score=30.69 Aligned_cols=35 Identities=6% Similarity=0.064 Sum_probs=26.5
Q ss_pred cCCCceEEEEECCCchhHHHHHHHHHcCCEEEEEe
Q 027062 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYR 55 (229)
Q Consensus 21 ~~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~ 55 (229)
...+.+||++|........+.+.|+..|+++....
T Consensus 5 ~~~~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~ 39 (222)
T PLN03029 5 TESQFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVD 39 (222)
T ss_pred CCCCccEEEEeCCHHHHHHHHHHHHHcCceEEEEC
Confidence 34568899999755566778888998998887654
No 191
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=81.46 E-value=15 Score=30.92 Aligned_cols=52 Identities=17% Similarity=0.075 Sum_probs=35.1
Q ss_pred CceEEEEECCCch--------hHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEEC
Q 027062 24 KNPIIVIDNYDSF--------TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLIS 75 (229)
Q Consensus 24 ~~~ilvid~~~~~--------~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~ 75 (229)
+++|+|+-.+.+- ...+.++|++.|+++.++..+......+...++|.++..
T Consensus 4 ~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~ 63 (304)
T PRK01372 4 FGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGEDIAAQLKELGFDRVFNA 63 (304)
T ss_pred CcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCcchHHHhccCCCCEEEEe
Confidence 4478887533221 256889999999999998765433344444578988875
No 192
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=81.08 E-value=3.4 Score=35.58 Aligned_cols=46 Identities=20% Similarity=0.178 Sum_probs=33.3
Q ss_pred CCCEEEECCCCCCCCCc--chHHHHHHH-hCCCCcEEEEehhHHHHHHH
Q 027062 68 NPRGVLISPGPGAPQDS--GISLQTVLE-LGPTVPLFGVCMGLQCIGEA 113 (229)
Q Consensus 68 ~~dgiii~GG~~~~~~~--~~~~~~i~~-~~~~~PvlGIC~G~Qlla~a 113 (229)
.+|-++++||....... .....++++ ..++.++-|||-|.-+|+.+
T Consensus 76 ~~~~v~v~~g~~~~~~~~~~~l~~~Lr~~~~~G~~l~gictGaf~LA~a 124 (328)
T COG4977 76 PIDILPVCGGLGPERPVNAPALLAWLRRAARRGARLGGLCTGAFVLAEA 124 (328)
T ss_pred cceEEEEecCCCcccccchHHHHHHHHHHHhcCCeEEEehHhHHHHHHh
Confidence 36778887775543322 346677765 45789999999999999986
No 193
>PRK13435 response regulator; Provisional
Probab=80.63 E-value=11 Score=27.40 Aligned_cols=85 Identities=8% Similarity=0.031 Sum_probs=46.8
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccC-HHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEE
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT-VEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF 101 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~-~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~Pvl 101 (229)
.+++|+|++........+.+.++..|..+...-.+... .+.+....+|.+|+--.-....+.-..++.+.+. ...|++
T Consensus 4 ~~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~dliivd~~~~~~~~~~~~~~~l~~~-~~~pii 82 (145)
T PRK13435 4 RQLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRRRQPDVALVDVHLADGPTGVEVARRLSAD-GGVEVV 82 (145)
T ss_pred ccceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhhcCCCEEEEeeecCCCCcHHHHHHHHHhC-CCCCEE
Confidence 46789999986666777888888888876532222111 1222233578888732211001112233444332 468988
Q ss_pred EEehhHH
Q 027062 102 GVCMGLQ 108 (229)
Q Consensus 102 GIC~G~Q 108 (229)
-++.-.+
T Consensus 83 ~ls~~~~ 89 (145)
T PRK13435 83 FMTGNPE 89 (145)
T ss_pred EEeCCHH
Confidence 8875544
No 194
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=80.28 E-value=15 Score=28.58 Aligned_cols=79 Identities=16% Similarity=0.336 Sum_probs=46.5
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCc-chHHHHHHHhCCCCcEEE
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFG 102 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~-~~~~~~i~~~~~~~PvlG 102 (229)
+++|+|+|........+...|+..|..+............+....+|.+++--. .+... -.+++.+++.....|++-
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvl~d~~--~~~~~g~~~~~~l~~~~~~~~ii~ 80 (228)
T PRK11083 3 QPTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQQPPDLVILDVG--LPDISGFELCRQLLAFHPALPVIF 80 (228)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhhCCCCCEEE
Confidence 368999997655667788888888888764432211122333336787776321 11112 234555655556688887
Q ss_pred Ee
Q 027062 103 VC 104 (229)
Q Consensus 103 IC 104 (229)
+.
T Consensus 81 ls 82 (228)
T PRK11083 81 LT 82 (228)
T ss_pred EE
Confidence 75
No 195
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=80.21 E-value=5.7 Score=21.69 Aligned_cols=50 Identities=24% Similarity=0.336 Sum_probs=29.3
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEE
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLI 74 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii 74 (229)
+++++++........+.+.++..|.++............+....++.+++
T Consensus 1 ~~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ 50 (55)
T smart00448 1 MRILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKEEKPDLILL 50 (55)
T ss_pred CeEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHHhcCCCEEEE
Confidence 36788887555667788888888887654442211122233334666665
No 196
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=80.13 E-value=6.6 Score=31.73 Aligned_cols=46 Identities=15% Similarity=0.283 Sum_probs=28.3
Q ss_pred CCCEEEECCCCCCCCCcc---hHHHHHHH-hCCCCcEEEEehhHHHHHHHhCCee
Q 027062 68 NPRGVLISPGPGAPQDSG---ISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKI 118 (229)
Q Consensus 68 ~~dgiii~GG~~~~~~~~---~~~~~i~~-~~~~~PvlGIC~G~Qlla~alGg~v 118 (229)
+-..+|++||.+.++-.. .--+.|.. ..++--.||||.|. ++|+..
T Consensus 49 ~T~lLV~pGGaDlpY~~~l~g~g~a~i~~yvk~GG~fLGiCAG~-----YFg~~~ 98 (253)
T COG4285 49 TTLLLVFPGGADLPYVQVLQGLGTARIKNYVKEGGNFLGICAGG-----YFGSAY 98 (253)
T ss_pred ceEEEEecCCCCchHHHHhcchhhhhHHHHHhcCCeEEEEeccc-----cccceE
Confidence 446799999987765321 11223332 34567899999984 456544
No 197
>PRK06703 flavodoxin; Provisional
Probab=80.03 E-value=7.4 Score=29.16 Aligned_cols=48 Identities=15% Similarity=0.225 Sum_probs=28.7
Q ss_pred ceEEEE-ECCCchhHH----HHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEE
Q 027062 25 NPIIVI-DNYDSFTYN----LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLI 74 (229)
Q Consensus 25 ~~ilvi-d~~~~~~~~----~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii 74 (229)
|+++|+ ....+.+.. +.+.++..|+++.+....+.+..++. ++|.|+|
T Consensus 2 mkv~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~l~--~~d~vii 54 (151)
T PRK06703 2 AKILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMDGMDAEELL--AYDGIIL 54 (151)
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCceEEEehhhCCHHHHh--cCCcEEE
Confidence 355555 333344444 44556667888888876544445555 5688877
No 198
>PRK06756 flavodoxin; Provisional
Probab=79.90 E-value=11 Score=28.09 Aligned_cols=49 Identities=14% Similarity=0.215 Sum_probs=28.6
Q ss_pred ceEEEE-ECCCchhHH----HHHHHHHcCCEEEEEeCCcc-CHHHHhccCCCEEEEC
Q 027062 25 NPIIVI-DNYDSFTYN----LCQYMGELGYHFEVYRNDEL-TVEELKRKNPRGVLIS 75 (229)
Q Consensus 25 ~~ilvi-d~~~~~~~~----~~~~l~~~g~~~~v~~~~~~-~~~~l~~~~~dgiii~ 75 (229)
|+|+|| ....+.+.. +.+.+++.|.++.+....+. ...++. ++|+|+|.
T Consensus 2 mkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~--~~d~vi~g 56 (148)
T PRK06756 2 SKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDIMDSPEASILE--QYDGIILG 56 (148)
T ss_pred ceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeehhccCCHHHHh--cCCeEEEE
Confidence 467777 333344444 44556667888887765322 234454 56888764
No 199
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=79.48 E-value=6.2 Score=35.47 Aligned_cols=75 Identities=20% Similarity=0.203 Sum_probs=43.1
Q ss_pred ceEEEEECC-------------CchhHHHHHHHHHcCCEEE--EEeCCccCH-----HHHhccCCCEEEECCCCCCCC--
Q 027062 25 NPIIVIDNY-------------DSFTYNLCQYMGELGYHFE--VYRNDELTV-----EELKRKNPRGVLISPGPGAPQ-- 82 (229)
Q Consensus 25 ~~ilvid~~-------------~~~~~~~~~~l~~~g~~~~--v~~~~~~~~-----~~l~~~~~dgiii~GG~~~~~-- 82 (229)
|+++|||-| +.|.+-+.-+|+++|.+++ .+..|..-. +.+. ++|.+++-+|-..|.
T Consensus 1 m~~~IiDGY~DEPAglGVPPYi~~YpRY~aGAl~~~g~~~~v~Y~tID~lR~~~~~~~~l~--k~d~~V~I~G~~vPGKY 78 (560)
T COG1031 1 MRAAIIDGYTDEPAGLGVPPYIGPYPRYAAGALKKAGKDVEVDYVTIDRLRENFKTLEILN--KYDLVVFIAGVTVPGKY 78 (560)
T ss_pred CceeeeccccCCcccCCCCCcccccHHHHHHHHHHcCCCceeEEEEHHHhhccchhhhhhh--cCCEEEEEeccccCccc
Confidence 678999876 3345667788888865544 333332111 1122 689999999955442
Q ss_pred ------CcchHHHHHHHhCCCCcEEE
Q 027062 83 ------DSGISLQTVLELGPTVPLFG 102 (229)
Q Consensus 83 ------~~~~~~~~i~~~~~~~PvlG 102 (229)
+...+..+++.. +++.|+|
T Consensus 79 lga~P~tl~E~~~i~~~~-~gvkilG 103 (560)
T COG1031 79 LGATPATLEELLRILSIA-DGVKILG 103 (560)
T ss_pred cCCCCCCHHHHHHHHHHh-cCcEEec
Confidence 222333333333 3477887
No 200
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=79.40 E-value=4 Score=33.26 Aligned_cols=90 Identities=20% Similarity=0.310 Sum_probs=58.3
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHH-hCCCCcEEE
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLE-LGPTVPLFG 102 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~-~~~~~i~~-~~~~~PvlG 102 (229)
++|+||+-.......+...|+..|+++..........+.+... ||.||+== +.|.-++ .+.+.+++ .....||+-
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~-~dlviLD~--~lP~~dG~~~~~~iR~~~~~~~PIi~ 77 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAREQ-PDLVLLDL--MLPDLDGLELCRRLRAKKGSGPPIIV 77 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC-CCEEEEEC--CCCCCCHHHHHHHHHhhcCCCCcEEE
Confidence 5899999766677889999999999999887542223344444 89888732 3333333 34566664 345688988
Q ss_pred Eehh----HHHHHHHhCCe
Q 027062 103 VCMG----LQCIGEAFGGK 117 (229)
Q Consensus 103 IC~G----~Qlla~alGg~ 117 (229)
+..- -.+.+...|+.
T Consensus 78 Lta~~~~~d~v~gl~~GAD 96 (229)
T COG0745 78 LTARDDEEDRVLGLEAGAD 96 (229)
T ss_pred EECCCcHHHHHHHHhCcCC
Confidence 8765 33333445553
No 201
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=79.30 E-value=9.4 Score=34.04 Aligned_cols=43 Identities=12% Similarity=0.026 Sum_probs=26.7
Q ss_pred hHHHHHHHHHcCCEEEEEeCCccCHHH----Hhc--cCCCEEEECCCCC
Q 027062 37 TYNLCQYMGELGYHFEVYRNDELTVEE----LKR--KNPRGVLISPGPG 79 (229)
Q Consensus 37 ~~~~~~~l~~~g~~~~v~~~~~~~~~~----l~~--~~~dgiii~GG~~ 79 (229)
...+..++++.|+++..+..-..+.+. +.. .++|.||++||.+
T Consensus 206 ~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~~DlvIttGG~S 254 (411)
T PRK10680 206 RLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVS 254 (411)
T ss_pred HHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhccCCCEEEEcCCCC
Confidence 445788899999987654321112222 222 2589999998854
No 202
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=79.07 E-value=11 Score=29.16 Aligned_cols=78 Identities=14% Similarity=0.151 Sum_probs=44.9
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCc-chHHHHHHHhCCCCcEEEE
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFGV 103 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~-~~~~~~i~~~~~~~PvlGI 103 (229)
|+|+++|........+...|+..|..+..........+.+....+|.+++--. .+... -...+.++......|++-+
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~d~illd~~--~~~~~g~~~~~~l~~~~~~~pii~l 78 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLESGHYSLVVLDLG--LPDEDGLHLLRRWRQKKYTLPVLIL 78 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEECC--CCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 47999997656677788889888987655432211122233335787766321 12222 2344555555456788766
Q ss_pred e
Q 027062 104 C 104 (229)
Q Consensus 104 C 104 (229)
.
T Consensus 79 s 79 (222)
T PRK10643 79 T 79 (222)
T ss_pred E
Confidence 3
No 203
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=79.07 E-value=14 Score=29.00 Aligned_cols=77 Identities=8% Similarity=0.069 Sum_probs=45.4
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCc-chHHHHHHHhCCCCcEEEE
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFGV 103 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~-~~~~~~i~~~~~~~PvlGI 103 (229)
|+|++++........+...|+..|..+..........+.+....+|.+++--. .+... -...+.+++.....|++-+
T Consensus 1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~--~~~~~g~~~~~~lr~~~~~~pii~l 78 (227)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIM--LPDVNGWDIVRMLRSANKGMPILLL 78 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhCCCCEEEEECC--CCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 47999998666677788889888987665543211112233336788877321 12222 2345555555556888765
No 204
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=78.20 E-value=3.6 Score=31.61 Aligned_cols=80 Identities=13% Similarity=0.055 Sum_probs=45.5
Q ss_pred ceEEEEEC-CCchh----HHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCc---chHHHHHHHhCC
Q 027062 25 NPIIVIDN-YDSFT----YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS---GISLQTVLELGP 96 (229)
Q Consensus 25 ~~ilvid~-~~~~~----~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~---~~~~~~i~~~~~ 96 (229)
|++||+=. .++-+ ..++.-|++.|+++++.+.......++. +||.|||.-+-..-+.. ..++..-.+.-.
T Consensus 1 Mk~LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi~dl~~~~~~~l~--~ydavVIgAsI~~~h~~~~~~~Fv~k~~e~L~ 78 (175)
T COG4635 1 MKTLILYSTRDGQTRKIAEYIASHLRESGIQVDIQDLHAVEEPALE--DYDAVVIGASIRYGHFHEAVQSFVKKHAEALS 78 (175)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHhhhcCCeeeeeehhhhhccChh--hCceEEEecchhhhhhHHHHHHHHHHHHHHHh
Confidence 56777622 23333 3466678889999999886532211333 78999984332111111 123333333446
Q ss_pred CCcEEEEehh
Q 027062 97 TVPLFGVCMG 106 (229)
Q Consensus 97 ~~PvlGIC~G 106 (229)
++|.--+|.+
T Consensus 79 ~kP~A~f~vn 88 (175)
T COG4635 79 TKPSAFFSVN 88 (175)
T ss_pred cCCceEEEee
Confidence 7898888866
No 205
>PRK05568 flavodoxin; Provisional
Probab=78.03 E-value=25 Score=25.81 Aligned_cols=50 Identities=20% Similarity=0.213 Sum_probs=30.5
Q ss_pred eEEEE-ECCCchhHHHHHH----HHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCC
Q 027062 26 PIIVI-DNYDSFTYNLCQY----MGELGYHFEVYRNDELTVEELKRKNPRGVLISPGP 78 (229)
Q Consensus 26 ~ilvi-d~~~~~~~~~~~~----l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~ 78 (229)
+++|+ ....+.+..++++ +++.|++++++...+.+..++. ++|+|+| |.|
T Consensus 3 ~~~IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~~~~~~~~--~~d~iil-gsp 57 (142)
T PRK05568 3 KINIIYWSGTGNTEAMANLIAEGAKENGAEVKLLNVSEASVDDVK--GADVVAL-GSP 57 (142)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHH--hCCEEEE-ECC
Confidence 34444 4444556555444 4557899998887655555665 5688776 444
No 206
>PRK01215 competence damage-inducible protein A; Provisional
Probab=77.73 E-value=15 Score=30.60 Aligned_cols=44 Identities=18% Similarity=0.283 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHcCCEEEEEe--CCccC--HHHHhcc--CCCEEEECCCCC
Q 027062 36 FTYNLCQYMGELGYHFEVYR--NDELT--VEELKRK--NPRGVLISPGPG 79 (229)
Q Consensus 36 ~~~~~~~~l~~~g~~~~v~~--~~~~~--~~~l~~~--~~dgiii~GG~~ 79 (229)
....+.++|.+.|+++.... .|+.. .+.+... ++|.||++||-+
T Consensus 24 n~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVIttGG~g 73 (264)
T PRK01215 24 NASWIARRLTYLGYTVRRITVVMDDIEEIVSAFREAIDRADVVVSTGGLG 73 (264)
T ss_pred hHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 44568888999999886443 23211 1122211 579999999865
No 207
>PRK14498 putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional
Probab=77.11 E-value=20 Score=33.82 Aligned_cols=44 Identities=27% Similarity=0.223 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHcCCEEEEEeCCccCHHH----Hhcc--CCCEEEECCCCC
Q 027062 36 FTYNLCQYMGELGYHFEVYRNDELTVEE----LKRK--NPRGVLISPGPG 79 (229)
Q Consensus 36 ~~~~~~~~l~~~g~~~~v~~~~~~~~~~----l~~~--~~dgiii~GG~~ 79 (229)
....+..++++.|+++.....-..+.+. +... ++|.||.+||.+
T Consensus 214 n~~~l~~~l~~~g~~~~~~~~v~Dd~~~i~~~l~~~~~~~D~iIttGG~s 263 (633)
T PRK14498 214 NSYTLAAAVEEAGGEPVRYGIVPDDEEELEAALRKALKECDLVLLSGGTS 263 (633)
T ss_pred hHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEECCCCc
Confidence 3456888899999988644321111222 2221 589999999964
No 208
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=77.00 E-value=19 Score=30.60 Aligned_cols=79 Identities=15% Similarity=0.137 Sum_probs=49.1
Q ss_pred cCCCceEEEEECCCchhH-HHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCc-------chHHHHHH
Q 027062 21 KNNKNPIIVIDNYDSFTY-NLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-------GISLQTVL 92 (229)
Q Consensus 21 ~~~~~~ilvid~~~~~~~-~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~-------~~~~~~i~ 92 (229)
..++-+|.|.+....+.+ .+++.|++.|+++.++... .-..-+. ++|.+++ |. .++... +-+.-.+.
T Consensus 142 ~~k~~~V~VtESRP~~eG~~~ak~L~~~gI~~~~I~Ds-a~~~~~~--~vd~Viv-Ga-d~I~~nG~lvnkiGT~~lA~~ 216 (301)
T COG1184 142 RGKRFKVIVTESRPRGEGRIMAKELRQSGIPVTVIVDS-AVGAFMS--RVDKVLV-GA-DAILANGALVNKIGTSPLALA 216 (301)
T ss_pred cCCceEEEEEcCCCcchHHHHHHHHHHcCCceEEEech-HHHHHHH--hCCEEEE-Cc-cceecCCcEEeccchHHHHHH
Confidence 344568899998777765 4789999999999988732 1112222 4577765 43 333222 22333344
Q ss_pred HhCCCCcEEEEe
Q 027062 93 ELGPTVPLFGVC 104 (229)
Q Consensus 93 ~~~~~~PvlGIC 104 (229)
+.+.++|++-.|
T Consensus 217 A~e~~~Pf~v~a 228 (301)
T COG1184 217 ARELRVPFYVVA 228 (301)
T ss_pred HHHhCCCEEEEe
Confidence 445679999888
No 209
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=76.39 E-value=9 Score=27.36 Aligned_cols=63 Identities=14% Similarity=0.183 Sum_probs=38.0
Q ss_pred HHHHHHHHHcCCEEEEEeCCccCHHHH----hccCCCEEEECCCCCCCC-CcchHHHHHHHhCC-CCcEE
Q 027062 38 YNLCQYMGELGYHFEVYRNDELTVEEL----KRKNPRGVLISPGPGAPQ-DSGISLQTVLELGP-TVPLF 101 (229)
Q Consensus 38 ~~~~~~l~~~g~~~~v~~~~~~~~~~l----~~~~~dgiii~GG~~~~~-~~~~~~~~i~~~~~-~~Pvl 101 (229)
..+..+|+..|+++.....+ .+.+++ .+.++|.|.|+....... ....+++.+++... +++|+
T Consensus 17 ~~~~~~l~~~G~~V~~lg~~-~~~~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~ 85 (119)
T cd02067 17 NIVARALRDAGFEVIDLGVD-VPPEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVL 85 (119)
T ss_pred HHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEE
Confidence 35778899999999776644 555554 344899999987632221 22334455555543 44433
No 210
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=76.33 E-value=31 Score=29.60 Aligned_cols=70 Identities=10% Similarity=0.057 Sum_probs=39.0
Q ss_pred CceEEEEECC---------CchhHHHHHHHHHcCCEEEEEeCCccCHHH----Hhc---cCCCEEEECCCCCCCCCcchH
Q 027062 24 KNPIIVIDNY---------DSFTYNLCQYMGELGYHFEVYRNDELTVEE----LKR---KNPRGVLISPGPGAPQDSGIS 87 (229)
Q Consensus 24 ~~~ilvid~~---------~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~----l~~---~~~dgiii~GG~~~~~~~~~~ 87 (229)
++++.||-.. +.+...+..++++.|+++.....-..+.+. +.. ..+|.||++||.+ +...+..
T Consensus 159 ~~rv~II~TG~Ev~~G~i~D~~~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~ai~~~~~~g~DlIItTGGts-vg~~D~t 237 (312)
T cd03522 159 PLRVGLIVTGSEVYGGRIEDKFGPVLRARLAALGVELVEQVIVPHDEAAIAAAIAEALEAGAELLILTGGAS-VDPDDVT 237 (312)
T ss_pred CCEEEEEEcCCcCCCCcEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhcCCCCEEEEeCCcc-cCCcchH
Confidence 4677777543 334456888899999988644321112222 221 1378899998854 3333333
Q ss_pred HHHHHHh
Q 027062 88 LQTVLEL 94 (229)
Q Consensus 88 ~~~i~~~ 94 (229)
.+.++++
T Consensus 238 p~Ai~~~ 244 (312)
T cd03522 238 PAAIRAA 244 (312)
T ss_pred HHHHHhc
Confidence 3444443
No 211
>PF13941 MutL: MutL protein
Probab=75.59 E-value=25 Score=31.89 Aligned_cols=79 Identities=19% Similarity=0.185 Sum_probs=47.4
Q ss_pred CCceEEEEECCCchhHH-HHHHHHHcCCEEEEEeCCccCH---HHHhccCCCEEEECCCCCCCCCcchH--HHHHHHhCC
Q 027062 23 NKNPIIVIDNYDSFTYN-LCQYMGELGYHFEVYRNDELTV---EELKRKNPRGVLISPGPGAPQDSGIS--LQTVLELGP 96 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~-~~~~l~~~g~~~~v~~~~~~~~---~~l~~~~~dgiii~GG~~~~~~~~~~--~~~i~~~~~ 96 (229)
...|+.++..-...+.. -.++...+|+++.-+.....+. +++...++|.|+|.||...-..+.-. .+.+.+..-
T Consensus 75 GGLrmvv~Glv~~~Ta~AAk~AAlgAGA~V~~v~s~~l~~~~l~~i~~~~PDiILLaGGtDgG~~~~il~nA~~La~~~~ 154 (457)
T PF13941_consen 75 GGLRMVVIGLVPDLTAEAAKRAALGAGARVLQVYSYELTEEDLEEIREIRPDIILLAGGTDGGNKEVILHNAEMLAEANL 154 (457)
T ss_pred CcceEEEEecCHHHHHHHHHHHHhcCCcEEEEEeccCCCHHHHHHHhccCCCEEEEeCCccCCchHHHHHHHHHHHhCCC
Confidence 46888888876565533 4445556788887655444444 45566699999999997543222211 233334444
Q ss_pred CCcEE
Q 027062 97 TVPLF 101 (229)
Q Consensus 97 ~~Pvl 101 (229)
++||+
T Consensus 155 ~~pVI 159 (457)
T PF13941_consen 155 RIPVI 159 (457)
T ss_pred CCcEE
Confidence 56643
No 212
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=75.52 E-value=22 Score=27.93 Aligned_cols=79 Identities=11% Similarity=0.146 Sum_probs=45.8
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHh--CCCCcEEE
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL--GPTVPLFG 102 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~--~~~~PvlG 102 (229)
++|+++|........+...|+..|+++..........+.+....+|.+++--.... .+.-..++.+++. ....|++-
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~l~~-~~g~~~~~~l~~~~~~~~~pvi~ 81 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPG-GSGIQFIKHLKRESMTRDIPVVM 81 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhccCCCEEEEeCCCCC-CCHHHHHHHHHhccccCCCCEEE
Confidence 57999997666677788889888888764432211122333336788877432111 1222344555543 24678887
Q ss_pred Ee
Q 027062 103 VC 104 (229)
Q Consensus 103 IC 104 (229)
++
T Consensus 82 ls 83 (229)
T PRK10161 82 LT 83 (229)
T ss_pred EE
Confidence 65
No 213
>PRK03673 hypothetical protein; Provisional
Probab=75.45 E-value=12 Score=33.28 Aligned_cols=46 Identities=11% Similarity=0.157 Sum_probs=29.3
Q ss_pred chhHHHHHHHHHcCCEEEEEeCCccCHHHHhc----c--CCCEEEECCCCCC
Q 027062 35 SFTYNLCQYMGELGYHFEVYRNDELTVEELKR----K--NPRGVLISPGPGA 80 (229)
Q Consensus 35 ~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~----~--~~dgiii~GG~~~ 80 (229)
+....+.++|.+.|+++.....-..+.+.+.. . ++|.||++||-+-
T Consensus 21 tN~~~la~~L~~~G~~v~~~~~v~D~~~~i~~~l~~a~~~~DlVI~tGGlGp 72 (396)
T PRK03673 21 TNAAWLADFFFHQGLPLSRRNTVGDNLDALVAILRERSQHADVLIVNGGLGP 72 (396)
T ss_pred hHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhccCCEEEEcCCCCC
Confidence 44566889999999988644321112233221 1 5799999999653
No 214
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=75.25 E-value=22 Score=27.84 Aligned_cols=79 Identities=16% Similarity=0.327 Sum_probs=45.2
Q ss_pred eEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCC-CCcchHHHHHHHhCCCCcEEEEe
Q 027062 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAP-QDSGISLQTVLELGPTVPLFGVC 104 (229)
Q Consensus 26 ~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~-~~~~~~~~~i~~~~~~~PvlGIC 104 (229)
+|+++|....+...+...|+..|+++............+....+|.+++--..... .+.-.+.+.++......|++-+.
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvild~~l~~~~~~g~~~~~~i~~~~~~~pii~ls 81 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQRLPDLAIIDIGLGEEIDGGFMLCQDLRSLSATLPIIFLT 81 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHhCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCCCCEEEEE
Confidence 68999876556677888898888877654322111222333468888773221111 11223455555544567877664
No 215
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=74.92 E-value=20 Score=30.74 Aligned_cols=40 Identities=20% Similarity=0.260 Sum_probs=27.9
Q ss_pred hHHHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECC
Q 027062 37 TYNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISP 76 (229)
Q Consensus 37 ~~~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~G 76 (229)
...+.+.+++.|+.+.+...+..+. +.+...++||||+.|
T Consensus 77 ~~gi~~~~~~~gy~~~l~~~~~~~~~e~~~~~~l~~~~vdGiIi~~ 122 (333)
T COG1609 77 LKGIEEAAREAGYSLLLANTDDDPEKEREYLETLLQKRVDGLILLG 122 (333)
T ss_pred HHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 3456777788999999888653221 123444799999998
No 216
>PRK14497 putative molybdopterin biosynthesis protein MoeA/unknown domain fusion protein; Provisional
Probab=74.57 E-value=11 Score=35.00 Aligned_cols=43 Identities=16% Similarity=0.137 Sum_probs=26.6
Q ss_pred hHHHHHHHHHcCCEEEEEeCCccCHHHHh----c--cCCCEEEECCCCC
Q 027062 37 TYNLCQYMGELGYHFEVYRNDELTVEELK----R--KNPRGVLISPGPG 79 (229)
Q Consensus 37 ~~~~~~~l~~~g~~~~v~~~~~~~~~~l~----~--~~~dgiii~GG~~ 79 (229)
...+..++++.|+++..+..-..+.+++. . .++|.||++||.+
T Consensus 208 s~~L~a~l~~~G~~v~~~~iv~Dd~e~i~~~l~~al~~~DlVIttGGtS 256 (546)
T PRK14497 208 LHYLYSKLKSEGYKIVGLSLLSDDKESIKNEIKRAISVADVLILTGGTS 256 (546)
T ss_pred HHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhhcCCEEEEcCCcc
Confidence 44577889999998765432111223332 2 1589999999854
No 217
>PRK11173 two-component response regulator; Provisional
Probab=74.44 E-value=30 Score=27.40 Aligned_cols=78 Identities=14% Similarity=0.157 Sum_probs=45.7
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCCCcEEE
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG 102 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~-~~~~~i~~~~~~~PvlG 102 (229)
..+|++++........+...|+..|..+............+....+|.+++--. .+...+ ...+.+++. ...|++-
T Consensus 3 ~~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~--l~~~~g~~~~~~lr~~-~~~pii~ 79 (237)
T PRK11173 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSENDINLVIMDIN--LPGKNGLLLARELREQ-ANVALMF 79 (237)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhCCCCEEEEcCC--CCCCCHHHHHHHHhcC-CCCCEEE
Confidence 357999997555667788889989988765543211122333346888876321 222222 234444443 4678876
Q ss_pred Ee
Q 027062 103 VC 104 (229)
Q Consensus 103 IC 104 (229)
+.
T Consensus 80 lt 81 (237)
T PRK11173 80 LT 81 (237)
T ss_pred EE
Confidence 64
No 218
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=74.28 E-value=15 Score=32.57 Aligned_cols=57 Identities=21% Similarity=0.148 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHcCCEEEEEeCCccCHHH----Hhcc--CCCEEEECCCCCCCCCcchHHHHHHH
Q 027062 36 FTYNLCQYMGELGYHFEVYRNDELTVEE----LKRK--NPRGVLISPGPGAPQDSGISLQTVLE 93 (229)
Q Consensus 36 ~~~~~~~~l~~~g~~~~v~~~~~~~~~~----l~~~--~~dgiii~GG~~~~~~~~~~~~~i~~ 93 (229)
....+..+|++.|+++..+..-..+.+. +... .+|.||.+||.+ +.+.+...+.+.+
T Consensus 196 n~~~l~~~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~~DliittGG~s-~g~~D~~~~al~~ 258 (394)
T cd00887 196 NSYMLAALLRELGAEVVDLGIVPDDPEALREALEEALEEADVVITSGGVS-VGDYDFVKEVLEE 258 (394)
T ss_pred hHHHHHHHHHHCCCEEEEeceeCCCHHHHHHHHHHHhhCCCEEEEeCCCC-CCcchhHHHHHHh
Confidence 3456888899999988755421112222 2221 489999999854 3333333333333
No 219
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=74.06 E-value=37 Score=26.81 Aligned_cols=76 Identities=9% Similarity=0.138 Sum_probs=44.4
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCc---cCHHHH------------------------hccCCCEEEEC
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDE---LTVEEL------------------------KRKNPRGVLIS 75 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~---~~~~~l------------------------~~~~~dgiii~ 75 (229)
.+.+|++|.....+...+.++.+..|.....-++-. .....+ ....+|.||++
T Consensus 55 ~~g~iLfV~t~~~~~~~v~~~a~~~~~~~i~~rw~~G~LTN~~~~~~~~~~~~~~~~~~~~k~~~g~~~~~~~Pdlviv~ 134 (193)
T cd01425 55 KGGKILFVGTKPQAQRAVKKFAERTGSFYVNGRWLGGTLTNWKTIRKSIKRLKKLEKEKLEKNLGGIKDMFRLPDLVIVL 134 (193)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHcCCeeecCeecCCcCCCHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCEEEEe
Confidence 467899998765566666667777776554333211 111111 11258888887
Q ss_pred CCCCCCCCcchHHHHHHHhCCCCcEEEEe
Q 027062 76 PGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (229)
Q Consensus 76 GG~~~~~~~~~~~~~i~~~~~~~PvlGIC 104 (229)
.- ..+...+++...+ ++|+.|+|
T Consensus 135 ~~----~~~~~ai~Ea~~l--~IP~I~i~ 157 (193)
T cd01425 135 DP----RKEHQAIREASKL--GIPVIAIV 157 (193)
T ss_pred CC----ccchHHHHHHHHc--CCCEEEEe
Confidence 52 3333344444444 59999998
No 220
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=73.91 E-value=24 Score=31.24 Aligned_cols=81 Identities=17% Similarity=0.252 Sum_probs=46.5
Q ss_pred CCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCc-chHHHHHHHhCCCCcE
Q 027062 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPL 100 (229)
Q Consensus 22 ~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~-~~~~~~i~~~~~~~Pv 100 (229)
+.+++|+|+|........+...++..|+.+............+....+|.+++--. .+... -.+...+++.....|+
T Consensus 3 ~~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~DlvilD~~--m~~~~G~~~~~~ir~~~~~~~v 80 (441)
T PRK10365 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVR--MAEMDGIATLKEIKALNPAIPV 80 (441)
T ss_pred CCcceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhhCCCCeE
Confidence 35688999997666677788889988988765543211122233335777665221 11111 2334455554455677
Q ss_pred EEEe
Q 027062 101 FGVC 104 (229)
Q Consensus 101 lGIC 104 (229)
+-++
T Consensus 81 i~lt 84 (441)
T PRK10365 81 LIMT 84 (441)
T ss_pred EEEE
Confidence 7665
No 221
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=73.69 E-value=21 Score=29.66 Aligned_cols=50 Identities=18% Similarity=0.218 Sum_probs=32.7
Q ss_pred CchhHHHHHHHHHcCCEEEEEeCCccCHHHHhc------cCCCEEEECCCCCCCCC
Q 027062 34 DSFTYNLCQYMGELGYHFEVYRNDELTVEELKR------KNPRGVLISPGPGAPQD 83 (229)
Q Consensus 34 ~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~------~~~dgiii~GG~~~~~~ 83 (229)
++....+.+.|.+.|+++.....-....++|.+ .++|-||++||-|--+|
T Consensus 20 dtNa~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r~D~vI~tGGLGPT~D 75 (255)
T COG1058 20 DTNAAFLADELTELGVDLARITTVGDNPDRIVEALREASERADVVITTGGLGPTHD 75 (255)
T ss_pred cchHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhCCCEEEECCCcCCCcc
Confidence 345667899999999998755432122333321 16899999999774443
No 222
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=73.62 E-value=34 Score=25.43 Aligned_cols=71 Identities=15% Similarity=0.081 Sum_probs=41.3
Q ss_pred CCceEEEEECCCc----hhHHHHHHHHHcCCEEEEEeCCccCHHHHh----ccCCCEEEECCCCCCCC-CcchHHHHHHH
Q 027062 23 NKNPIIVIDNYDS----FTYNLCQYMGELGYHFEVYRNDELTVEELK----RKNPRGVLISPGPGAPQ-DSGISLQTVLE 93 (229)
Q Consensus 23 ~~~~ilvid~~~~----~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~----~~~~dgiii~GG~~~~~-~~~~~~~~i~~ 93 (229)
++++|++---.+. -...+...|+..|+++..+-.+ .+.+++. +.++|.|.+|--..... ....+++.+++
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~-vp~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~ 80 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVM-TSQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIE 80 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHh
Confidence 3455655533222 1234677889999999988766 5666654 33789998875433211 12234455555
Q ss_pred h
Q 027062 94 L 94 (229)
Q Consensus 94 ~ 94 (229)
.
T Consensus 81 ~ 81 (137)
T PRK02261 81 A 81 (137)
T ss_pred c
Confidence 4
No 223
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=73.48 E-value=19 Score=28.69 Aligned_cols=75 Identities=17% Similarity=0.236 Sum_probs=41.7
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCH--HHHhc-cCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcE
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTV--EELKR-KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL 100 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~--~~l~~-~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~Pv 100 (229)
+.+|+++.........+.++.+..|.....-++-.... ..... ..+|.||++. +..+...+++...+ ++|+
T Consensus 61 ~~~ILfVgtk~~~~~~V~~~A~~~g~~~v~~RWlgGtLTN~~~~~~~~Pdlliv~d----p~~~~~Av~EA~~l--~IP~ 134 (196)
T TIGR01012 61 PEDILVVSARIYGQKPVLKFAKVTGARAIAGRFTPGTFTNPMQKAFREPEVVVVTD----PRADHQALKEASEV--GIPI 134 (196)
T ss_pred CCeEEEEecCHHHHHHHHHHHHHhCCceECCeeCCCCCCCccccccCCCCEEEEEC----CccccHHHHHHHHc--CCCE
Confidence 55688887755555566666666776665433311000 00011 1478888863 33344444444444 5999
Q ss_pred EEEe
Q 027062 101 FGVC 104 (229)
Q Consensus 101 lGIC 104 (229)
.|||
T Consensus 135 Iai~ 138 (196)
T TIGR01012 135 VALC 138 (196)
T ss_pred EEEe
Confidence 9999
No 224
>PRK03094 hypothetical protein; Provisional
Probab=73.17 E-value=5.3 Score=26.88 Aligned_cols=37 Identities=11% Similarity=0.220 Sum_probs=27.1
Q ss_pred HHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCC
Q 027062 38 YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGA 80 (229)
Q Consensus 38 ~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~ 80 (229)
..+.+.|++.|++++-+... .+. .++|++|++|-..+
T Consensus 11 s~i~~~L~~~GYeVv~l~~~----~~~--~~~Da~VitG~d~n 47 (80)
T PRK03094 11 TDVQQALKQKGYEVVQLRSE----QDA--QGCDCCVVTGQDSN 47 (80)
T ss_pred HHHHHHHHHCCCEEEecCcc----ccc--CCcCEEEEeCCCcc
Confidence 35889999999999877532 112 26899999996543
No 225
>PLN02884 6-phosphofructokinase
Probab=73.14 E-value=3.8 Score=36.46 Aligned_cols=50 Identities=14% Similarity=0.215 Sum_probs=33.5
Q ss_pred HhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEEE-------------ehhHHHHHHH
Q 027062 64 LKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV-------------CMGLQCIGEA 113 (229)
Q Consensus 64 l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlGI-------------C~G~Qlla~a 113 (229)
|++.++|++|+-||.++......+.+...+.+.++|+.|| |+|+.-.+..
T Consensus 139 L~~~~Id~LivIGGdgS~~~a~~L~~~~~~~g~~i~vIGIPkTIDNDi~~tD~TiGFdTAv~~ 201 (411)
T PLN02884 139 IEARGINMLFVLGGNGTHAGANAIHNECRKRKMKVSVVGVPKTIDNDILLMDKTFGFDTAVEE 201 (411)
T ss_pred HHHcCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEeccccccCCCcCcccCCCHHHHHHH
Confidence 4455788899889887654444433333334445889998 9999887653
No 226
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=73.13 E-value=21 Score=26.85 Aligned_cols=73 Identities=12% Similarity=0.054 Sum_probs=44.3
Q ss_pred CCCceEEEEECC----CchhHHHHHHHHHcCCEEEEEeCCccCHHHHh----ccCCCEEEECCCCCCCC-CcchHHHHHH
Q 027062 22 NNKNPIIVIDNY----DSFTYNLCQYMGELGYHFEVYRNDELTVEELK----RKNPRGVLISPGPGAPQ-DSGISLQTVL 92 (229)
Q Consensus 22 ~~~~~ilvid~~----~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~----~~~~dgiii~GG~~~~~-~~~~~~~~i~ 92 (229)
..+.||+|.-.+ +--..-+.++|++.|+++........+ ++.- +.+.|.|.+|+=.+.-. ......+.++
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp-~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lr 88 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTP-EEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALR 88 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCH-HHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHH
Confidence 467788877432 222345789999999999987765333 3322 23789999987443222 2233456666
Q ss_pred HhC
Q 027062 93 ELG 95 (229)
Q Consensus 93 ~~~ 95 (229)
+.+
T Consensus 89 e~G 91 (143)
T COG2185 89 EAG 91 (143)
T ss_pred HhC
Confidence 654
No 227
>PF09075 STb_secrete: Heat-stable enterotoxin B, secretory; InterPro: IPR015160 Members of this family assume a helical secondary structure, with two alpha helices forming a disulphide cross-linked alpha-helical hairpin. The disulphide bonds are crucial for the toxic activity of the protein, and are required for maintenance of the tertiary structure, and subsequent interaction with the particulate form of guanylate cyclase, increasing cyclic GMP levels within the host intestinal epithelial cells []. ; PDB: 1EHS_A.
Probab=72.86 E-value=0.65 Score=26.52 Aligned_cols=17 Identities=35% Similarity=0.520 Sum_probs=11.2
Q ss_pred cEEEEehhHHHHHHHhC
Q 027062 99 PLFGVCMGLQCIGEAFG 115 (229)
Q Consensus 99 PvlGIC~G~Qlla~alG 115 (229)
-..|-|+|.|+|..+-|
T Consensus 31 gtagacfgaqimvaakg 47 (48)
T PF09075_consen 31 GTAGACFGAQIMVAAKG 47 (48)
T ss_dssp SS--TTTTTHHHHTTT-
T ss_pred Cccccccchhhhhhccc
Confidence 46789999999976543
No 228
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=72.79 E-value=33 Score=28.68 Aligned_cols=57 Identities=18% Similarity=0.091 Sum_probs=34.2
Q ss_pred ceEEEEECCCc-------hhHHHHHHHHHcCCEEEEEeCCcc-CHH----HHhccCCCEEEECCCCCCC
Q 027062 25 NPIIVIDNYDS-------FTYNLCQYMGELGYHFEVYRNDEL-TVE----ELKRKNPRGVLISPGPGAP 81 (229)
Q Consensus 25 ~~ilvid~~~~-------~~~~~~~~l~~~g~~~~v~~~~~~-~~~----~l~~~~~dgiii~GG~~~~ 81 (229)
+|++||-|..+ ....+.+.|++.|.++.+...... ... +....++|.||+.||-|+.
T Consensus 2 ~~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~GGDGTl 70 (293)
T TIGR00147 2 AEAPAILNPTAGKSNDNKPLREVIMLLREEGMEIHVRVTWEKGDAARYVEEARKFGVDTVIAGGGDGTI 70 (293)
T ss_pred ceEEEEECCCccchhhHHHHHHHHHHHHHCCCEEEEEEecCcccHHHHHHHHHhcCCCEEEEECCCChH
Confidence 46666655411 123466778888998887654321 111 1112257999999998864
No 229
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=72.58 E-value=29 Score=31.35 Aligned_cols=79 Identities=13% Similarity=0.111 Sum_probs=48.4
Q ss_pred CCceEEEEECCCchhH-HHHHHHHHcCCEEEEEeCCccC---HHHHhccCCCEEEECCCCCCCCCcch--HHHHHHHhCC
Q 027062 23 NKNPIIVIDNYDSFTY-NLCQYMGELGYHFEVYRNDELT---VEELKRKNPRGVLISPGPGAPQDSGI--SLQTVLELGP 96 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~-~~~~~l~~~g~~~~v~~~~~~~---~~~l~~~~~dgiii~GG~~~~~~~~~--~~~~i~~~~~ 96 (229)
...|+.++..-...+. .-.++...+|+.+.-+-..+.+ .+++...++|.|+|+||-..-..+.- -.+.+.+..-
T Consensus 71 GGLkmvv~Glv~~~TaeAAk~AAlgAGA~V~~~~a~~l~~~~l~~I~~~~PDIILLaGGtDGG~~e~~l~NA~~La~~~~ 150 (463)
T TIGR01319 71 GGLAMAAIGLVPEITAEAAKRAAHGAGAKIANVYAYDLNNKDIEAIEESNLDIILFAGGTDGGEEECGIHNAKMLAEHGL 150 (463)
T ss_pred CChheEEEeccchhhHHHHHHHHhcCCcEEEEEEeecCCHHHHHHHhhcCCCEEEEeCCcCCCchHHHHHHHHHHHhcCC
Confidence 4678888887666653 3445556788888753332233 35566679999999999654332221 1234445555
Q ss_pred CCcEE
Q 027062 97 TVPLF 101 (229)
Q Consensus 97 ~~Pvl 101 (229)
+.||.
T Consensus 151 ~~pII 155 (463)
T TIGR01319 151 DCAII 155 (463)
T ss_pred CCcEE
Confidence 67865
No 230
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=72.40 E-value=17 Score=26.02 Aligned_cols=79 Identities=11% Similarity=0.040 Sum_probs=42.6
Q ss_pred eEEEEECCCchh--HHHHHHHHHcCCEEEEEeCCccCHHHHhcc-CCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEE
Q 027062 26 PIIVIDNYDSFT--YNLCQYMGELGYHFEVYRNDELTVEELKRK-NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG 102 (229)
Q Consensus 26 ~ilvid~~~~~~--~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~-~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlG 102 (229)
+|.++..+.+.. ..+...+...|..+..+...+.-...+... .-|.+|+..-++...+....++..+ +++.|+++
T Consensus 2 ~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a~--~~g~~vi~ 79 (128)
T cd05014 2 KVVVTGVGKSGHIARKIAATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGETDELLNLLPHLK--RRGAPIIA 79 (128)
T ss_pred eEEEEeCcHhHHHHHHHHHHhhcCCCceEEcccchhhccccCcCCCCCEEEEEeCCCCCHHHHHHHHHHH--HCCCeEEE
Confidence 588888876643 446666777888887664321111111111 2266666654443333333333333 34699999
Q ss_pred Eehh
Q 027062 103 VCMG 106 (229)
Q Consensus 103 IC~G 106 (229)
|+-.
T Consensus 80 iT~~ 83 (128)
T cd05014 80 ITGN 83 (128)
T ss_pred EeCC
Confidence 9953
No 231
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=71.41 E-value=33 Score=27.09 Aligned_cols=32 Identities=13% Similarity=0.112 Sum_probs=19.6
Q ss_pred ceEEEEEC-CCchhHH----HHHHHHH-cCCEEEEEeC
Q 027062 25 NPIIVIDN-YDSFTYN----LCQYMGE-LGYHFEVYRN 56 (229)
Q Consensus 25 ~~ilvid~-~~~~~~~----~~~~l~~-~g~~~~v~~~ 56 (229)
++|+||-. ..+.+.. +.+.+++ .|++++++..
T Consensus 2 ~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l 39 (200)
T PRK03767 2 AKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRV 39 (200)
T ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEec
Confidence 47888854 1233433 4555566 7899988765
No 232
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=71.17 E-value=20 Score=28.78 Aligned_cols=60 Identities=20% Similarity=0.299 Sum_probs=33.8
Q ss_pred HHHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEEEe
Q 027062 38 YNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (229)
Q Consensus 38 ~~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlGIC 104 (229)
..+.+++++.|+++.+...+.... +.+...++||+|+.+... ..... .....++|++.++
T Consensus 19 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~----~~~~~---~~~~~~ipvv~~~ 84 (267)
T cd06284 19 KGIEDEAREAGYGVLLGDTRSDPEREQEYLDLLRRKQADGIILLDGSL----PPTAL---TALAKLPPIVQAC 84 (267)
T ss_pred HHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEecCCC----CHHHH---HHHhcCCCEEEEe
Confidence 446677888899998776542211 122334799999976421 11111 1223468888664
No 233
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=70.98 E-value=7.1 Score=29.05 Aligned_cols=81 Identities=22% Similarity=0.236 Sum_probs=42.4
Q ss_pred CchhHHHHHHHHHcCCEEEE---EeCCccCH-HHHhcc--CCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEEEehhH
Q 027062 34 DSFTYNLCQYMGELGYHFEV---YRNDELTV-EELKRK--NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGL 107 (229)
Q Consensus 34 ~~~~~~~~~~l~~~g~~~~v---~~~~~~~~-~~l~~~--~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlGIC~G~ 107 (229)
++....+.++|++.|+++.. ++.+.... +.+... +.|.||.+||-+- ...+...+.+.++. ..++-|+-.=+
T Consensus 16 d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~D~VittGG~g~-~~~D~t~~a~~~~~-~~~l~~~~~~~ 93 (144)
T PF00994_consen 16 DSNGPFLAALLEELGIEVIRYGIVPDDPDAIKEALRRALDRADLVITTGGTGP-GPDDVTPEALAEAG-GRELPGFEELF 93 (144)
T ss_dssp BHHHHHHHHHHHHTTEEEEEEEEEESSHHHHHHHHHHHHHTTSEEEEESSSSS-STTCHHHHHHHHHS-SEE-HHHHHHH
T ss_pred EhHHHHHHHHHHHcCCeeeEEEEECCCHHHHHHHHHhhhccCCEEEEcCCcCc-ccCCcccHHHHHhc-CcccccChHHH
Confidence 44566788999999998763 34331111 122211 5699999998763 33333334444432 23343333334
Q ss_pred HHHHHHhCC
Q 027062 108 QCIGEAFGG 116 (229)
Q Consensus 108 Qlla~alGg 116 (229)
+-+....|.
T Consensus 94 ~~~~~~pg~ 102 (144)
T PF00994_consen 94 RGVSMRPGK 102 (144)
T ss_dssp HHHHHHSTT
T ss_pred HHHHHHhhc
Confidence 444444443
No 234
>PRK06849 hypothetical protein; Provisional
Probab=70.87 E-value=27 Score=30.59 Aligned_cols=37 Identities=11% Similarity=0.149 Sum_probs=29.9
Q ss_pred cCCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCC
Q 027062 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND 57 (229)
Q Consensus 21 ~~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~ 57 (229)
|+.+++|||+.........+++.|.++|+++..+...
T Consensus 1 ~~~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~ 37 (389)
T PRK06849 1 MNTKKTVLITGARAPAALELARLFHNAGHTVILADSL 37 (389)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4567899999875545678999999999999988654
No 235
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=70.77 E-value=29 Score=34.34 Aligned_cols=81 Identities=25% Similarity=0.345 Sum_probs=51.6
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCCCcEE
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF 101 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~-~~~~~i~~~~~~~Pvl 101 (229)
...+|+|+|........+.+.|+..|+++..........+.+....+|.|++-- ..+...+ ...+.+++.....||+
T Consensus 800 ~~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~~~~DlVl~D~--~mP~mdG~el~~~ir~~~~~~pII 877 (924)
T PRK10841 800 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLTDV--NMPNMDGYRLTQRLRQLGLTLPVI 877 (924)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCCCCEEEEcC--CCCCCCHHHHHHHHHhcCCCCCEE
Confidence 567899999755566678889999999887665432222334444678776621 2232232 3456677666678999
Q ss_pred EEeh
Q 027062 102 GVCM 105 (229)
Q Consensus 102 GIC~ 105 (229)
++.-
T Consensus 878 ~lTa 881 (924)
T PRK10841 878 GVTA 881 (924)
T ss_pred EEEC
Confidence 8764
No 236
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=70.60 E-value=40 Score=25.29 Aligned_cols=81 Identities=14% Similarity=0.216 Sum_probs=45.9
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEE
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG 102 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlG 102 (229)
.+.+|++++........+...++..|..+............+....+|.+++--.. ...+.-.++..+++.....|++-
T Consensus 2 ~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~d~ii~d~~~-~~~~~~~~~~~l~~~~~~~~ii~ 80 (202)
T PRK09390 2 DKGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPGLRFGCVVTDVRM-PGIDGIELLRRLKARGSPLPVIV 80 (202)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhccCCCCEEEEeCCC-CCCcHHHHHHHHHhcCCCCCEEE
Confidence 35679999976556677888888888877654321111122333357777663221 11122234555555556688887
Q ss_pred Ee
Q 027062 103 VC 104 (229)
Q Consensus 103 IC 104 (229)
+.
T Consensus 81 l~ 82 (202)
T PRK09390 81 MT 82 (202)
T ss_pred EE
Confidence 65
No 237
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=70.56 E-value=11 Score=30.54 Aligned_cols=47 Identities=15% Similarity=0.250 Sum_probs=34.9
Q ss_pred CCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEEEehhHHHHHHHhCCeeeec
Q 027062 68 NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRS 121 (229)
Q Consensus 68 ~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlGIC~G~Qlla~alGg~v~~~ 121 (229)
.+|+++|. .+++ ..+..+++.. .+|+.|||--.-+.+...|-++.-.
T Consensus 69 GvdaiiIa-----Cf~D-Pgl~~~Re~~-~~PviGi~eAsv~~A~~vgrrfsVi 115 (230)
T COG4126 69 GVDAIIIA-----CFSD-PGLAAARERA-AIPVIGICEASVLAALFVGRRFSVI 115 (230)
T ss_pred CCcEEEEE-----ecCC-hHHHHHHHHh-CCCceehhHHHHHHHHHhcceEEEE
Confidence 47898884 2333 4566777653 4999999999999999988776544
No 238
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=70.41 E-value=29 Score=28.53 Aligned_cols=76 Identities=11% Similarity=0.190 Sum_probs=46.1
Q ss_pred CCceEEEEECCCc-hhHHHHHHHHHcCCEEEEEeCC---------ccCHHHH-------hccCCCEEEECCCCCCCCCcc
Q 027062 23 NKNPIIVIDNYDS-FTYNLCQYMGELGYHFEVYRND---------ELTVEEL-------KRKNPRGVLISPGPGAPQDSG 85 (229)
Q Consensus 23 ~~~~ilvid~~~~-~~~~~~~~l~~~g~~~~v~~~~---------~~~~~~l-------~~~~~dgiii~GG~~~~~~~~ 85 (229)
.-.||.|+-.|.. ....+.+++++.|+++.-...- ..+.+.+ ...+.|+|++++..... -
T Consensus 119 g~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAifisCTnLrt---~ 195 (239)
T TIGR02990 119 GVRRISLLTPYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADALFLSCTALRA---A 195 (239)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEEEEeCCCchh---H
Confidence 4578999998766 4467889999999999765321 1222222 12268999999754321 1
Q ss_pred hHHHHH-HHhCCCCcEEEE
Q 027062 86 ISLQTV-LELGPTVPLFGV 103 (229)
Q Consensus 86 ~~~~~i-~~~~~~~PvlGI 103 (229)
.+++.+ .++ ++||+-.
T Consensus 196 ~vi~~lE~~l--GkPVlsS 212 (239)
T TIGR02990 196 TCAQRIEQAI--GKPVVTS 212 (239)
T ss_pred HHHHHHHHHH--CCCEEEH
Confidence 122222 223 5899875
No 239
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=69.91 E-value=27 Score=26.73 Aligned_cols=77 Identities=14% Similarity=0.064 Sum_probs=42.5
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEE-EeCCccCHHHHhccCCCEEEECCCCCCCCCc-chHHHHHHHhCCCCcEEE
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEV-YRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFG 102 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v-~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~-~~~~~~i~~~~~~~PvlG 102 (229)
|+|+++|........+.+.|+..|.++.. ........+.+....+|.+++--. .+... -.+.+.+++.....|++-
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~dlvi~d~~--~~~~~g~~~~~~l~~~~~~~~ii~ 78 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVD--IPGVNGIQVLETLRKRQYSGIIII 78 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHccCCCEEEEeCC--CCCCCHHHHHHHHHhhCCCCeEEE
Confidence 57999997656667788888888887653 322111112233335777766332 11112 234455555444567655
Q ss_pred E
Q 027062 103 V 103 (229)
Q Consensus 103 I 103 (229)
+
T Consensus 79 l 79 (204)
T PRK09958 79 V 79 (204)
T ss_pred E
Confidence 4
No 240
>PRK09271 flavodoxin; Provisional
Probab=69.76 E-value=23 Score=26.87 Aligned_cols=52 Identities=15% Similarity=0.133 Sum_probs=27.3
Q ss_pred ceEEEE-ECCCchhHH----HHHHHHHcCCEEEEEeCCccCHHHH--hccCCCEEEECC
Q 027062 25 NPIIVI-DNYDSFTYN----LCQYMGELGYHFEVYRNDELTVEEL--KRKNPRGVLISP 76 (229)
Q Consensus 25 ~~ilvi-d~~~~~~~~----~~~~l~~~g~~~~v~~~~~~~~~~l--~~~~~dgiii~G 76 (229)
|+|+|+ ..-.+.+.. +.+.++..|+++.+.........++ +..++|+|+|..
T Consensus 1 mkv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~vilgt 59 (160)
T PRK09271 1 MRILLAYASLSGNTREVAREIEERCEEAGHEVDWVETDVQTLAEYPLDPEDYDLYLLGT 59 (160)
T ss_pred CeEEEEEEcCCchHHHHHHHHHHHHHhCCCeeEEEecccccccccccCcccCCEEEEEC
Confidence 456555 322334433 5566677898887766432222221 112568877744
No 241
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=69.22 E-value=21 Score=31.84 Aligned_cols=45 Identities=11% Similarity=0.196 Sum_probs=28.2
Q ss_pred chhHHHHHHHHHcCCEEEEEe--CCccC--HHHHhc--cCCCEEEECCCCC
Q 027062 35 SFTYNLCQYMGELGYHFEVYR--NDELT--VEELKR--KNPRGVLISPGPG 79 (229)
Q Consensus 35 ~~~~~~~~~l~~~g~~~~v~~--~~~~~--~~~l~~--~~~dgiii~GG~~ 79 (229)
+....+.++|++.|+++.... .|+.. .+.+.. .++|.||++||-+
T Consensus 20 tN~~~l~~~L~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlVIttGGlg 70 (413)
T TIGR00200 20 TNAQWLADFLAHQGLPLSRRTTVGDNPERLKTIIRIASERADVLIFNGGLG 70 (413)
T ss_pred chHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 345678899999999876443 12211 122222 1689999999955
No 242
>PRK00549 competence damage-inducible protein A; Provisional
Probab=69.20 E-value=34 Score=30.55 Aligned_cols=47 Identities=17% Similarity=0.234 Sum_probs=29.1
Q ss_pred CchhHHHHHHHHHcCCEEEEEe--CCccC--HHHHhc--cCCCEEEECCCCCC
Q 027062 34 DSFTYNLCQYMGELGYHFEVYR--NDELT--VEELKR--KNPRGVLISPGPGA 80 (229)
Q Consensus 34 ~~~~~~~~~~l~~~g~~~~v~~--~~~~~--~~~l~~--~~~dgiii~GG~~~ 80 (229)
+.....+.++|++.|+++.... .|+.. .+.+.. .++|.||++||-+-
T Consensus 19 DtN~~~L~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVItTGGlGp 71 (414)
T PRK00549 19 NTNAQFLSEKLAELGIDVYHQTVVGDNPERLLSALEIAEERSDLIITTGGLGP 71 (414)
T ss_pred EhhHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHhccCCCEEEECCCCCC
Confidence 3445678899999999876443 22211 112221 26799999999653
No 243
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=69.01 E-value=23 Score=33.30 Aligned_cols=44 Identities=16% Similarity=0.092 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHcCCEEEEEeCCccCHHH----Hhc--cCCCEEEECCCCC
Q 027062 36 FTYNLCQYMGELGYHFEVYRNDELTVEE----LKR--KNPRGVLISPGPG 79 (229)
Q Consensus 36 ~~~~~~~~l~~~g~~~~v~~~~~~~~~~----l~~--~~~dgiii~GG~~ 79 (229)
....+..++++.|+++.....-..+.+. +.. .++|.||.+||.+
T Consensus 395 n~~~L~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlIIttGG~s 444 (597)
T PRK14491 395 NRFTIKAMAKKLGCEVIDLGIIEDSEAALEATLEQAAAQADVVISSGGVS 444 (597)
T ss_pred CHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhhcCCEEEEcCCcc
Confidence 3446888899999987644321111222 222 1589999999854
No 244
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=68.96 E-value=41 Score=25.89 Aligned_cols=78 Identities=12% Similarity=0.104 Sum_probs=44.9
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCc-chHHHHHHHhCCCCcEEEE
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFGV 103 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~-~~~~~~i~~~~~~~PvlGI 103 (229)
++|+++|........+.+.++..|..+..........+.+....+|.+++--. .+... -.....++......|++-+
T Consensus 1 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~d~vild~~--~~~~~~~~~~~~i~~~~~~~~ii~l 78 (221)
T PRK15479 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQSEMYALAVLDIN--MPGMDGLEVLQRLRKRGQTLPVLLL 78 (221)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEeCC--CCCCcHHHHHHHHHhcCCCCCEEEE
Confidence 47899998666777788888888887654432211112233336788877321 11112 2344555555556888776
Q ss_pred e
Q 027062 104 C 104 (229)
Q Consensus 104 C 104 (229)
+
T Consensus 79 t 79 (221)
T PRK15479 79 T 79 (221)
T ss_pred E
Confidence 5
No 245
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=68.77 E-value=49 Score=27.81 Aligned_cols=52 Identities=17% Similarity=0.154 Sum_probs=33.6
Q ss_pred CCceEEEEECCCchh--------HHHHHHHHHcCCEEEEEeCCc-cCHHHHhccCCCEEEE
Q 027062 23 NKNPIIVIDNYDSFT--------YNLCQYMGELGYHFEVYRNDE-LTVEELKRKNPRGVLI 74 (229)
Q Consensus 23 ~~~~ilvid~~~~~~--------~~~~~~l~~~g~~~~v~~~~~-~~~~~l~~~~~dgiii 74 (229)
++++|+||-.+.+-. ..+.++|++.|+++..+..+. .-...+...++|.++.
T Consensus 2 ~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~~~~~~~~~l~~~~~d~vf~ 62 (296)
T PRK14569 2 KNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFV 62 (296)
T ss_pred CCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcCCchhHHHHhhccCCCEEEE
Confidence 477899997654432 347888999999998775431 1123454456786554
No 246
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=68.39 E-value=32 Score=30.67 Aligned_cols=82 Identities=17% Similarity=0.252 Sum_probs=46.5
Q ss_pred cCCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCCCc
Q 027062 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVP 99 (229)
Q Consensus 21 ~~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~-~~~~~i~~~~~~~P 99 (229)
|....+|+|||........+...++..|+++............+....+|.+++-- . .+...+ .+++.+++.....|
T Consensus 1 ~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlillD~-~-~p~~~g~~ll~~i~~~~~~~p 78 (457)
T PRK11361 1 MTAINRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDI-R-MPEMDGIKALKEMRSHETRTP 78 (457)
T ss_pred CCCCCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEeC-C-CCCCCHHHHHHHHHhcCCCCC
Confidence 34456899999765666778888888898876543221112223333577766532 1 122222 23455554445677
Q ss_pred EEEEe
Q 027062 100 LFGVC 104 (229)
Q Consensus 100 vlGIC 104 (229)
++.+.
T Consensus 79 vI~lt 83 (457)
T PRK11361 79 VILMT 83 (457)
T ss_pred EEEEe
Confidence 77664
No 247
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=68.35 E-value=42 Score=26.91 Aligned_cols=75 Identities=19% Similarity=0.310 Sum_probs=41.8
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCc--cCHHHHhc-cCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcE
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDE--LTVEELKR-KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL 100 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~--~~~~~l~~-~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~Pv 100 (229)
..+|++|.........+.++.+..|.....-++-. .+-..++. ..+|.||++. +..+...+.+...+ ++|+
T Consensus 67 ~~~ILfVgTk~~~~~~v~k~A~~~g~~~v~~RWlgG~LTN~~~~~~~~Pdliiv~d----p~~~~~AI~EA~kl--~IP~ 140 (204)
T PRK04020 67 PEKILVVSSRQYGQKPVQKFAEVVGAKAITGRFIPGTLTNPSLKGYIEPDVVVVTD----PRGDAQAVKEAIEV--GIPV 140 (204)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCeeecCccCCCcCcCcchhccCCCCEEEEEC----CcccHHHHHHHHHh--CCCE
Confidence 45688887655555666677777777665444311 11011111 2578888865 23333333343444 5999
Q ss_pred EEEe
Q 027062 101 FGVC 104 (229)
Q Consensus 101 lGIC 104 (229)
.|+|
T Consensus 141 Iaiv 144 (204)
T PRK04020 141 VALC 144 (204)
T ss_pred EEEE
Confidence 9999
No 248
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=67.71 E-value=12 Score=29.09 Aligned_cols=77 Identities=14% Similarity=0.127 Sum_probs=44.7
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCc-chHHHHHHHhCCCCcEEEE
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFGV 103 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~-~~~~~~i~~~~~~~PvlGI 103 (229)
|+|++++....+...+...|+..|..+............+....+|.+++--. .+... -..++.+++. ...|++-+
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~~~~dlvi~d~~--~~~~~g~~~~~~l~~~-~~~~ii~l 77 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIM--LPGMDGWQILQTLRTA-KQTPVICL 77 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEECC--CCCCCHHHHHHHHHcC-CCCCEEEE
Confidence 47999997666677788888888887655443211122333346888877322 11112 2334444443 35788776
Q ss_pred e
Q 027062 104 C 104 (229)
Q Consensus 104 C 104 (229)
.
T Consensus 78 s 78 (223)
T PRK11517 78 T 78 (223)
T ss_pred E
Confidence 5
No 249
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=67.71 E-value=6 Score=32.69 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=26.3
Q ss_pred CCCEEEECCCCCCCCCcchHHHHHHHh-CCCCcEEEEehhH
Q 027062 68 NPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGL 107 (229)
Q Consensus 68 ~~dgiii~GG~~~~~~~~~~~~~i~~~-~~~~PvlGIC~G~ 107 (229)
++|.+|..||-|. +++..+.. ..++|||||-.|.
T Consensus 25 ~~Dlvi~iGGDGT------lL~a~~~~~~~~~PvlGIN~G~ 59 (246)
T PRK04761 25 EADVIVALGGDGF------MLQTLHRYMNSGKPVYGMNRGS 59 (246)
T ss_pred cCCEEEEECCCHH------HHHHHHHhcCCCCeEEEEeCCC
Confidence 4689999999764 56666653 4679999999885
No 250
>PRK03670 competence damage-inducible protein A; Provisional
Probab=67.63 E-value=35 Score=28.26 Aligned_cols=47 Identities=23% Similarity=0.339 Sum_probs=28.8
Q ss_pred chhHHHHHHHHHcCCEEEEEeC--CccC--HHHHhc---cCCCEEEECCCCCCC
Q 027062 35 SFTYNLCQYMGELGYHFEVYRN--DELT--VEELKR---KNPRGVLISPGPGAP 81 (229)
Q Consensus 35 ~~~~~~~~~l~~~g~~~~v~~~--~~~~--~~~l~~---~~~dgiii~GG~~~~ 81 (229)
.....+.++|.+.|+++..... |+.. .+.+.. ..+|.||++||-+--
T Consensus 20 tN~~~la~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~~~~~DlVIttGGlGpt 73 (252)
T PRK03670 20 SNSAFIAQKLTEKGYWVRRITTVGDDVEEIKSVVLEILSRKPEVLVISGGLGPT 73 (252)
T ss_pred hhHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhhCCCCEEEECCCccCC
Confidence 3455688899999998864432 2211 122222 147999999996643
No 251
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=67.06 E-value=35 Score=33.24 Aligned_cols=81 Identities=12% Similarity=0.144 Sum_probs=49.7
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhcc--CCCEEEECCCCCCCCCcchHHHHHHHhCCCCcE
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRK--NPRGVLISPGPGAPQDSGISLQTVLELGPTVPL 100 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~--~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~Pv 100 (229)
.+.+|+|+|........+.+.|...|+++..........+.+... .+|.|++ . ....+.......++.....+||
T Consensus 696 ~~~~ILvVddd~~~~~~l~~~L~~~G~~v~~~~s~~~al~~l~~~~~~~DlVll-~--~~~~~g~~l~~~l~~~~~~ipI 772 (828)
T PRK13837 696 RGETVLLVEPDDATLERYEEKLAALGYEPVGFSTLAAAIAWISKGPERFDLVLV-D--DRLLDEEQAAAALHAAAPTLPI 772 (828)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCceEEEE-C--CCCCCHHHHHHHHHhhCCCCCE
Confidence 356899999765666778889999999987765422222233222 2677777 1 1112223345556655567888
Q ss_pred EEEehh
Q 027062 101 FGVCMG 106 (229)
Q Consensus 101 lGIC~G 106 (229)
+-++..
T Consensus 773 Ivls~~ 778 (828)
T PRK13837 773 ILGGNS 778 (828)
T ss_pred EEEeCC
Confidence 887743
No 252
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=67.06 E-value=3.9 Score=35.42 Aligned_cols=50 Identities=12% Similarity=0.205 Sum_probs=32.6
Q ss_pred HhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEEE-------------ehhHHHHHHH
Q 027062 64 LKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV-------------CMGLQCIGEA 113 (229)
Q Consensus 64 l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlGI-------------C~G~Qlla~a 113 (229)
+++.++|++++.||.++......+.+.+.+...++||.|| |+|+.-.+..
T Consensus 88 l~~~~I~~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigiPkTIDNDl~~td~s~Gf~TA~~~ 150 (338)
T cd00363 88 LKKHGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLPGTIDNDIKGTDYTIGFDTALKT 150 (338)
T ss_pred HHHhCCCEEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEeeecccCCCcCcccCcCHHHHHHH
Confidence 5556889999999987655444444444433344666665 8888877654
No 253
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=67.06 E-value=15 Score=32.78 Aligned_cols=78 Identities=13% Similarity=0.122 Sum_probs=47.0
Q ss_pred ceEEEEECCCc----hhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCCCc
Q 027062 25 NPIIVIDNYDS----FTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVP 99 (229)
Q Consensus 25 ~~ilvid~~~~----~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~-~~~~~i~~~~~~~P 99 (229)
.++|||-.-.. +.++++++|-. |.+|-++.+.+....++ .=|.-+..|.- ...+.+..++.++-
T Consensus 103 ~pvLiV~Pl~g~~~~L~RS~V~~Ll~-g~dVYl~DW~~p~~vp~----------~~~~f~ldDYi~~l~~~i~~~G~~v~ 171 (406)
T TIGR01849 103 PAVLIVAPMSGHYATLLRSTVEALLP-DHDVYITDWVNARMVPL----------SAGKFDLEDYIDYLIEFIRFLGPDIH 171 (406)
T ss_pred CcEEEEcCCchHHHHHHHHHHHHHhC-CCcEEEEeCCCCCCCch----------hcCCCCHHHHHHHHHHHHHHhCCCCc
Confidence 57888854322 35778888888 99998888752221111 11222222221 23455566777799
Q ss_pred EEEEehhHHHHHHH
Q 027062 100 LFGVCMGLQCIGEA 113 (229)
Q Consensus 100 vlGIC~G~Qlla~a 113 (229)
++|+|.|--+...+
T Consensus 172 l~GvCqgG~~~laa 185 (406)
T TIGR01849 172 VIAVCQPAVPVLAA 185 (406)
T ss_pred EEEEchhhHHHHHH
Confidence 99999998875543
No 254
>PRK15115 response regulator GlrR; Provisional
Probab=66.83 E-value=43 Score=29.73 Aligned_cols=80 Identities=13% Similarity=0.193 Sum_probs=47.0
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCCCcEE
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF 101 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~-~~~~~i~~~~~~~Pvl 101 (229)
...+|+|||........+...++..|+.+............+....+|.||+--. .+...+ ..+..+++.....|++
T Consensus 4 ~~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~~~~dlvilD~~--lp~~~g~~ll~~l~~~~~~~pvI 81 (444)
T PRK15115 4 KPAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNREKVDLVISDLR--MDEMDGMQLFAEIQKVQPGMPVI 81 (444)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEcCC--CCCCCHHHHHHHHHhcCCCCcEE
Confidence 4578999998666777788889989987765443211122233336777776321 122222 2344455445567877
Q ss_pred EEe
Q 027062 102 GVC 104 (229)
Q Consensus 102 GIC 104 (229)
-++
T Consensus 82 vlt 84 (444)
T PRK15115 82 ILT 84 (444)
T ss_pred EEE
Confidence 765
No 255
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=66.13 E-value=9.4 Score=29.40 Aligned_cols=52 Identities=15% Similarity=0.176 Sum_probs=36.7
Q ss_pred CCCEEEECCCCCCCCCcc-------------hHHHHHHH-hCCCCcEEEEehhHHHHHHHhCCeee
Q 027062 68 NPRGVLISPGPGAPQDSG-------------ISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIV 119 (229)
Q Consensus 68 ~~dgiii~GG~~~~~~~~-------------~~~~~i~~-~~~~~PvlGIC~G~Qlla~alGg~v~ 119 (229)
.+|++|++||.+...+-. .+...... .+.++|+-=||..--++...+|-.+.
T Consensus 85 ~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m~pki~g~~~~ 150 (217)
T COG3155 85 ELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKIFGFPLR 150 (217)
T ss_pred hcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHHHHHHcCCcee
Confidence 479999999988653221 12223333 25689999999999999999886554
No 256
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=65.83 E-value=38 Score=28.04 Aligned_cols=75 Identities=13% Similarity=0.265 Sum_probs=37.0
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHH-HH-hc-cCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcE
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVE-EL-KR-KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL 100 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~-~l-~~-~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~Pv 100 (229)
...|++|.........+.++.+..|.....-++-...+. .+ .. ..+|.||++. +..+...+++...+ ++|+
T Consensus 71 ~~~Il~Vstr~~~~~~V~k~A~~tg~~~i~~Rw~pGtlTN~~~~~f~~P~llIV~D----p~~d~qAI~EA~~l--nIPv 144 (249)
T PTZ00254 71 PADVVVVSSRPYGQRAVLKFAQYTGASAIAGRFTPGTFTNQIQKKFMEPRLLIVTD----PRTDHQAIREASYV--NIPV 144 (249)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHhCCeEECCcccCCCCCCccccccCCCCEEEEeC----CCcchHHHHHHHHh--CCCE
Confidence 445666665443444455555556665543332111000 00 11 1467777764 33333334444444 5999
Q ss_pred EEEe
Q 027062 101 FGVC 104 (229)
Q Consensus 101 lGIC 104 (229)
+|+|
T Consensus 145 Ial~ 148 (249)
T PTZ00254 145 IALC 148 (249)
T ss_pred EEEe
Confidence 9999
No 257
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=65.76 E-value=17 Score=24.61 Aligned_cols=82 Identities=16% Similarity=0.199 Sum_probs=43.2
Q ss_pred cCCCceEEEEECCCchhHHHHHHHHHcCCE-EEEEeCCccCHHHHhccCCCEEEECCCCCCCCCc-chHHHHHHHh--CC
Q 027062 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYH-FEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLEL--GP 96 (229)
Q Consensus 21 ~~~~~~ilvid~~~~~~~~~~~~l~~~g~~-~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~-~~~~~~i~~~--~~ 96 (229)
.++.++|++++........+.+.++..|.. +............+....+|.+++-... +... -...+.+.+. ..
T Consensus 2 ~~~~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~di~l~d~~~--~~~~~~~~~~~l~~~~~~~ 79 (129)
T PRK10610 2 ADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGFGFVISDWNM--PNMDGLELLKTIRADGAMS 79 (129)
T ss_pred CcccceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhccCCCEEEEcCCC--CCCCHHHHHHHHHhCCCcC
Confidence 345678999987555666788888888874 3333321111222333357777663221 1111 2234444443 24
Q ss_pred CCcEEEEe
Q 027062 97 TVPLFGVC 104 (229)
Q Consensus 97 ~~PvlGIC 104 (229)
..|++-++
T Consensus 80 ~~~~i~~~ 87 (129)
T PRK10610 80 ALPVLMVT 87 (129)
T ss_pred CCcEEEEE
Confidence 56776664
No 258
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=65.37 E-value=9.4 Score=32.75 Aligned_cols=58 Identities=14% Similarity=0.196 Sum_probs=35.2
Q ss_pred HHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEEE
Q 027062 38 YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 103 (229)
Q Consensus 38 ~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlGI 103 (229)
..+.+-|..+|++..++.-...+ .++.. .|.||-.||.|..-- ..-+-.+..+||+||
T Consensus 78 ~~~~~~l~k~giesklv~R~~ls-q~i~w--aD~VisvGGDGTfL~-----Aasrv~~~~~PViGv 135 (395)
T KOG4180|consen 78 KFCQEELSKAGIESKLVSRNDLS-QPIRW--ADMVISVGGDGTFLL-----AASRVIDDSKPVIGV 135 (395)
T ss_pred HHHHHHHhhCCcceeeeehhhcc-CcCch--hhEEEEecCccceee-----hhhhhhccCCceeee
Confidence 34556677788887766543333 22443 488998999876421 111124557999998
No 259
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=65.13 E-value=10 Score=31.60 Aligned_cols=84 Identities=19% Similarity=0.204 Sum_probs=44.8
Q ss_pred ccccCCCceEEEEECCCchhH-HHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCc-------chHHH
Q 027062 18 KKSKNNKNPIIVIDNYDSFTY-NLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-------GISLQ 89 (229)
Q Consensus 18 ~~~~~~~~~ilvid~~~~~~~-~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~-------~~~~~ 89 (229)
+..++.+.+|.|++......+ .+++.|.+.|+++.+++... -..-+.. ++|.+++ |...+... +...-
T Consensus 127 a~~~~~~~~V~v~es~P~~eG~~~a~~L~~~gi~v~~i~d~~-~~~~m~~-~vd~Vli--Gad~v~~nG~v~nk~Gt~~~ 202 (282)
T PF01008_consen 127 AKKKGKKFRVIVLESRPYNEGRLMAKELAEAGIPVTLIPDSA-VGYVMPR-DVDKVLI--GADAVLANGGVVNKVGTLQL 202 (282)
T ss_dssp HHHTTEEEEEEEE--TTTTHHHTHHHHHHHTT-EEEEE-GGG-HHHHHHC-TESEEEE--E-SEEETTS-EEEETTHHHH
T ss_pred HHHcCCeEEEEEccCCcchhhhhHHHHhhhcceeEEEEechH-HHHHHHH-hCCeeEE--eeeEEecCCCEeehhhHHHH
Confidence 445556778999998766554 57888999999999887431 1122332 2677766 23333222 22322
Q ss_pred HHHHhCCCCcEEEEeh
Q 027062 90 TVLELGPTVPLFGVCM 105 (229)
Q Consensus 90 ~i~~~~~~~PvlGIC~ 105 (229)
.+.+...++|++-+|-
T Consensus 203 a~~Ak~~~vPv~v~~~ 218 (282)
T PF01008_consen 203 ALAAKEFNVPVYVLAE 218 (282)
T ss_dssp HHHHHHTT-EEEEE--
T ss_pred HHHHHhhCCCEEEEcc
Confidence 3333335799999983
No 260
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=65.09 E-value=16 Score=28.42 Aligned_cols=78 Identities=12% Similarity=0.172 Sum_probs=45.1
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCc-chHHHHHHHh--CCCCcEE
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLEL--GPTVPLF 101 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~-~~~~~~i~~~--~~~~Pvl 101 (229)
++|+++|....+...+...|+..|.++............+....+|.+++--.- +... -...+.++.. ....|++
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~d~vi~d~~~--~~~~g~~~~~~l~~~~~~~~~~ii 80 (226)
T TIGR02154 3 RRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINERGPDLILLDWML--PGTSGIELCRRLRRRPETRAIPII 80 (226)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHhcCCCEEEEECCC--CCCcHHHHHHHHHccccCCCCCEE
Confidence 579999976666777888888888877644322111222333468888773221 1112 2344555443 2467888
Q ss_pred EEe
Q 027062 102 GVC 104 (229)
Q Consensus 102 GIC 104 (229)
-++
T Consensus 81 ~ls 83 (226)
T TIGR02154 81 MLT 83 (226)
T ss_pred EEe
Confidence 775
No 261
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=64.61 E-value=45 Score=29.93 Aligned_cols=79 Identities=20% Similarity=0.313 Sum_probs=46.6
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCC-CcchHHHHHHHhCCCCcEEE
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELGPTVPLFG 102 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~-~~~~~~~~i~~~~~~~PvlG 102 (229)
..+|+|||........+.+.|+..|+.+............+....+|.+|+--. .+. +.-.+++.+++.....|++-
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~~~~DlvllD~~--lp~~dgl~~l~~ir~~~~~~pvIv 80 (469)
T PRK10923 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALASKTPDVLLSDIR--MPGMDGLALLKQIKQRHPMLPVII 80 (469)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCCCCEEEECCC--CCCCCHHHHHHHHHhhCCCCeEEE
Confidence 358999997666777888999999988765443211122333346777765321 122 22234555555445677777
Q ss_pred Ee
Q 027062 103 VC 104 (229)
Q Consensus 103 IC 104 (229)
++
T Consensus 81 lt 82 (469)
T PRK10923 81 MT 82 (469)
T ss_pred EE
Confidence 75
No 262
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=64.45 E-value=5.8 Score=35.89 Aligned_cols=50 Identities=16% Similarity=0.178 Sum_probs=34.6
Q ss_pred HhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEE-------------EehhHHHHHHH
Q 027062 64 LKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG-------------VCMGLQCIGEA 113 (229)
Q Consensus 64 l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlG-------------IC~G~Qlla~a 113 (229)
|+..++|++++-||.++......+.+.+.+.+.++||.| -|+|++-.+..
T Consensus 172 L~~~~I~~L~vIGGdgT~~~A~~L~ee~~~~g~~I~VIGIPKTIDNDI~~td~S~GFdTAv~~ 234 (459)
T PTZ00286 172 LIRHGINILFTLGGDGTHRGALAIYKELRRRKLNISVVGIPKTIDNDIPIIDESFGFQTAVEE 234 (459)
T ss_pred HHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCCCcccCcCchHHHHH
Confidence 455588999999998876555555555554444577777 49999987653
No 263
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=64.12 E-value=66 Score=28.89 Aligned_cols=56 Identities=18% Similarity=0.102 Sum_probs=37.1
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccC-HHHHhc--------------cCCCEEEECCCC
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT-VEELKR--------------KNPRGVLISPGP 78 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~-~~~l~~--------------~~~dgiii~GG~ 78 (229)
..++|+|+..+.+-...++++|.+.|++|........+ .+++.+ .++|-||+++|-
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi 76 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAI 76 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCC
Confidence 44679999987655555789999999999877643211 122221 147888888774
No 264
>PRK14072 6-phosphofructokinase; Provisional
Probab=64.10 E-value=5.2 Score=35.70 Aligned_cols=49 Identities=14% Similarity=0.195 Sum_probs=31.6
Q ss_pred HhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEE-------------EehhHHHHHH
Q 027062 64 LKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG-------------VCMGLQCIGE 112 (229)
Q Consensus 64 l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlG-------------IC~G~Qlla~ 112 (229)
+++.++|++|+-||.++......+.+.+.+.+.++|+.| .|.|+.-.+.
T Consensus 99 l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~g~~i~vIgIPkTIDNDl~gtD~t~GF~TA~~ 160 (416)
T PRK14072 99 FKAHDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTIDNDLPGTDHCPGFGSAAK 160 (416)
T ss_pred HHHcCCCEEEEECChHHHHHHHHHHHHHHHhCCCceEEEeeecccCCCCCCCCCCChHHHHH
Confidence 455578999999998775444443333333444467777 4889887755
No 265
>PRK13054 lipid kinase; Reviewed
Probab=64.05 E-value=18 Score=30.49 Aligned_cols=59 Identities=17% Similarity=0.008 Sum_probs=34.8
Q ss_pred CceEEEEECCCc-h---hHHHHHHHHHcCCEEEEEeCCc-cCHHH----HhccCCCEEEECCCCCCCC
Q 027062 24 KNPIIVIDNYDS-F---TYNLCQYMGELGYHFEVYRNDE-LTVEE----LKRKNPRGVLISPGPGAPQ 82 (229)
Q Consensus 24 ~~~ilvid~~~~-~---~~~~~~~l~~~g~~~~v~~~~~-~~~~~----l~~~~~dgiii~GG~~~~~ 82 (229)
++++++|-|..+ . ...+.+.|++.|.++.+..... ....+ ....++|.||+.||-|+.+
T Consensus 3 ~~~~~~i~N~~~~~~~~~~~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl~ 70 (300)
T PRK13054 3 FPKSLLILNGKSAGNEELREAVGLLREEGHTLHVRVTWEKGDAARYVEEALALGVATVIAGGGDGTIN 70 (300)
T ss_pred CceEEEEECCCccchHHHHHHHHHHHHcCCEEEEEEecCCCcHHHHHHHHHHcCCCEEEEECCccHHH
Confidence 345666655433 2 2345667888999887655321 11222 2223689999999988643
No 266
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=63.95 E-value=36 Score=33.19 Aligned_cols=81 Identities=15% Similarity=0.113 Sum_probs=49.6
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHh----CCC
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL----GPT 97 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~-~~~~~i~~~----~~~ 97 (229)
.+++|+|+|........+.+.|+..|+++..........+.+....||.|++- - ..+...+ ...+.+++. ...
T Consensus 689 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~dlil~D-~-~mp~~~G~~~~~~ir~~~~~~~~~ 766 (921)
T PRK15347 689 WQLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGRQHRFDLVLMD-I-RMPGLDGLETTQLWRDDPNNLDPD 766 (921)
T ss_pred ccCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCCCCEEEEe-C-CCCCCCHHHHHHHHHhchhhcCCC
Confidence 45789999975556677888999999988765532222233444468877662 1 2232232 345555542 256
Q ss_pred CcEEEEeh
Q 027062 98 VPLFGVCM 105 (229)
Q Consensus 98 ~PvlGIC~ 105 (229)
.||+.++-
T Consensus 767 ~pii~lt~ 774 (921)
T PRK15347 767 CMIVALTA 774 (921)
T ss_pred CcEEEEeC
Confidence 89998864
No 267
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=63.91 E-value=6.3 Score=34.98 Aligned_cols=50 Identities=14% Similarity=0.112 Sum_probs=32.9
Q ss_pred HhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEEE-------------ehhHHHHHHH
Q 027062 64 LKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV-------------CMGLQCIGEA 113 (229)
Q Consensus 64 l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlGI-------------C~G~Qlla~a 113 (229)
|+..++|++|+.||.++......+.+.+.+.+-++|+.|| |+|+.-.+..
T Consensus 108 L~~~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgIPkTIDNDl~~td~t~Gf~TA~~~ 170 (403)
T PRK06555 108 LAADGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKTIDNDVVPIRQSLGAWTAAEQ 170 (403)
T ss_pred HHHcCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEeeeeeeCCCCCccCCcCHHHHHHH
Confidence 5556899999999988754444433333333234666665 9999887653
No 268
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=63.69 E-value=25 Score=24.83 Aligned_cols=38 Identities=26% Similarity=0.414 Sum_probs=27.3
Q ss_pred HHHHHHHHHcCCEEEEEeCCccCHHH----HhccCCCEEEECC
Q 027062 38 YNLCQYMGELGYHFEVYRNDELTVEE----LKRKNPRGVLISP 76 (229)
Q Consensus 38 ~~~~~~l~~~g~~~~v~~~~~~~~~~----l~~~~~dgiii~G 76 (229)
..+...|++.|+++.++..+ .+.++ +.+.++|.|.++.
T Consensus 18 ~~la~~l~~~G~~v~~~d~~-~~~~~l~~~~~~~~pd~V~iS~ 59 (121)
T PF02310_consen 18 LYLAAYLRKAGHEVDILDAN-VPPEELVEALRAERPDVVGISV 59 (121)
T ss_dssp HHHHHHHHHTTBEEEEEESS-B-HHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHHCCCeEEEECCC-CCHHHHHHHHhcCCCcEEEEEc
Confidence 45788899999999988765 33333 3345899999975
No 269
>PRK13856 two-component response regulator VirG; Provisional
Probab=63.67 E-value=61 Score=25.76 Aligned_cols=77 Identities=12% Similarity=0.200 Sum_probs=44.8
Q ss_pred eEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCCCcEEEEe
Q 027062 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGVC 104 (229)
Q Consensus 26 ~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~-~~~~~i~~~~~~~PvlGIC 104 (229)
+|++++........+...|+..|..+..........+.+....+|.+++-- ..+...+ .+++.++.. ...|++-+.
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~--~l~~~~g~~l~~~i~~~-~~~pii~lt 79 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLASETVDVVVVDL--NLGREDGLEIVRSLATK-SDVPIIIIS 79 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhCCCCEEEEeC--CCCCCCHHHHHHHHHhc-CCCcEEEEE
Confidence 799999766667778888988898877554321111223334678887732 1222222 234445443 358887775
Q ss_pred h
Q 027062 105 M 105 (229)
Q Consensus 105 ~ 105 (229)
.
T Consensus 80 ~ 80 (241)
T PRK13856 80 G 80 (241)
T ss_pred C
Confidence 3
No 270
>PRK11914 diacylglycerol kinase; Reviewed
Probab=63.63 E-value=17 Score=30.74 Aligned_cols=57 Identities=12% Similarity=0.086 Sum_probs=33.9
Q ss_pred ceEEEEECCCc---h----hHHHHHHHHHcCCEEEEEeCCc-cCHHH----HhccCCCEEEECCCCCCC
Q 027062 25 NPIIVIDNYDS---F----TYNLCQYMGELGYHFEVYRNDE-LTVEE----LKRKNPRGVLISPGPGAP 81 (229)
Q Consensus 25 ~~ilvid~~~~---~----~~~~~~~l~~~g~~~~v~~~~~-~~~~~----l~~~~~dgiii~GG~~~~ 81 (229)
+++++|-|..+ - ...+.+.|++.|+++.++.... ....+ ....++|.||+.||-|+.
T Consensus 9 ~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~GGDGTi 77 (306)
T PRK11914 9 GKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALVVVGGDGVI 77 (306)
T ss_pred ceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEECCchHH
Confidence 56777655322 1 1246778888999887655321 11111 222367999999997754
No 271
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=63.53 E-value=43 Score=28.14 Aligned_cols=63 Identities=19% Similarity=0.315 Sum_probs=37.5
Q ss_pred HHHHHHHHHcCCEEEEEeCCc--c----CHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHh-CCCCcEEEEehh
Q 027062 38 YNLCQYMGELGYHFEVYRNDE--L----TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMG 106 (229)
Q Consensus 38 ~~~~~~l~~~g~~~~v~~~~~--~----~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~-~~~~PvlGIC~G 106 (229)
..+..++...+..+.+..... . ...+.+...+|.+++.||.|. ++...+.. ..++||+||=.|
T Consensus 19 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~d~ivvlGGDGt------lL~~~~~~~~~~~pilgin~G 88 (281)
T COG0061 19 KRLYEFLKFKGVTVEVDQELAEELKDFADYVDDDEEKADLIVVLGGDGT------LLRAARLLARLDIPVLGINLG 88 (281)
T ss_pred HHHHHHHHhcCceEEEechhhhhcccccccccccccCceEEEEeCCcHH------HHHHHHHhccCCCCEEEEeCC
Confidence 346666777777776554210 0 011111225788888888764 45555543 345899999999
No 272
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=62.85 E-value=19 Score=28.02 Aligned_cols=77 Identities=16% Similarity=0.166 Sum_probs=45.1
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCc-chHHHHHHHhCCCCcEEEE
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFGV 103 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~-~~~~~~i~~~~~~~PvlGI 103 (229)
++|++|+........+...++..|..+..........+.+....+|.+++--. .+... -.+.+.++.. ...|++-+
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvild~~--l~~~~g~~~~~~lr~~-~~~~ii~l 79 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQNQHVDLILLDIN--LPGEDGLMLTRELRSR-STVGIILV 79 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhC-CCCCEEEE
Confidence 57999997655667788889889988765543211122233336788877432 12222 2344555543 46788776
Q ss_pred e
Q 027062 104 C 104 (229)
Q Consensus 104 C 104 (229)
.
T Consensus 80 ~ 80 (221)
T PRK10766 80 T 80 (221)
T ss_pred E
Confidence 4
No 273
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=62.74 E-value=6.4 Score=36.36 Aligned_cols=50 Identities=16% Similarity=0.298 Sum_probs=32.6
Q ss_pred HhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEEE---------------ehhHHHHHHH
Q 027062 64 LKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV---------------CMGLQCIGEA 113 (229)
Q Consensus 64 l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlGI---------------C~G~Qlla~a 113 (229)
+.+.++|++|+.||.++......+.+...+.+.+++|.|| |+|+.-.+..
T Consensus 157 l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGIPkTIDNDl~~~~td~s~GFdTA~~~ 221 (539)
T TIGR02477 157 AKKLKLDGLVIIGGDDSNTNAALLAEYFAKHGLKTQVIGVPKTIDGDLKNQFIETSFGFDTACKI 221 (539)
T ss_pred HHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHHH
Confidence 4455889999999988755444443433333444666665 8999877664
No 274
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=62.62 E-value=33 Score=29.43 Aligned_cols=58 Identities=14% Similarity=0.204 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHcCCEEEEEeC--CccC--HHHHhc---cCCCEEEECCCCCCCCCcchHHHHHHHh
Q 027062 36 FTYNLCQYMGELGYHFEVYRN--DELT--VEELKR---KNPRGVLISPGPGAPQDSGISLQTVLEL 94 (229)
Q Consensus 36 ~~~~~~~~l~~~g~~~~v~~~--~~~~--~~~l~~---~~~dgiii~GG~~~~~~~~~~~~~i~~~ 94 (229)
....+..+|++.|+++..+.. |+.. .+.+.. .++|.||.+||.+ +...+...+.+..+
T Consensus 176 n~~~L~~~L~~~G~~v~~~~iVpDD~~~I~~al~~a~~~~~DlIITTGGtg-~g~~D~tpeAl~~l 240 (312)
T PRK03604 176 SGKLIVEGLEEAGFEVSHYTIIPDEPAEIAAAVAAWIAEGYALIITTGGTG-LGPRDVTPEALAPL 240 (312)
T ss_pred HHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHhhhCCCCEEEECCCCC-CCCCccHHHHHHHh
Confidence 345688999999998875432 2211 112222 2589999998854 33333333444444
No 275
>PRK13558 bacterio-opsin activator; Provisional
Probab=62.61 E-value=36 Score=31.98 Aligned_cols=79 Identities=10% Similarity=0.035 Sum_probs=46.0
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCC-CcchHHHHHHHhCCCCcEEE
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELGPTVPLFG 102 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~-~~~~~~~~i~~~~~~~PvlG 102 (229)
+++|+|||........+.+.+...|+.+............+....+|.||+--. .+. +-...++.++.....+|++-
T Consensus 7 ~~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~~~~~Dlvl~d~~--lp~~~g~~~l~~l~~~~~~~piI~ 84 (665)
T PRK13558 7 TRGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVEAGEIDCVVADHE--PDGFDGLALLEAVRQTTAVPPVVV 84 (665)
T ss_pred ceeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhhccCCCEEEEecc--CCCCcHHHHHHHHHhcCCCCCEEE
Confidence 468999997666777777788888876655443211112233335777766321 122 22234556666566788877
Q ss_pred Ee
Q 027062 103 VC 104 (229)
Q Consensus 103 IC 104 (229)
++
T Consensus 85 lt 86 (665)
T PRK13558 85 VP 86 (665)
T ss_pred EE
Confidence 75
No 276
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=61.87 E-value=77 Score=24.95 Aligned_cols=31 Identities=16% Similarity=0.143 Sum_probs=17.6
Q ss_pred eEEEEEC-CCchhHHHHH----HHHHc-CCEEEEEeC
Q 027062 26 PIIVIDN-YDSFTYNLCQ----YMGEL-GYHFEVYRN 56 (229)
Q Consensus 26 ~ilvid~-~~~~~~~~~~----~l~~~-g~~~~v~~~ 56 (229)
+|+||=. ..+.+..+++ .+++. |+++++++.
T Consensus 2 kilIiY~S~~G~T~~lA~~ia~g~~~~~g~ev~~~~v 38 (197)
T TIGR01755 2 KVLVLYYSMYGHIETMARAVAEGAREVDGAEVVVKRV 38 (197)
T ss_pred eEEEEEeCCCCHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 5777732 2234444444 44454 889888764
No 277
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=61.75 E-value=6.8 Score=36.30 Aligned_cols=50 Identities=18% Similarity=0.335 Sum_probs=32.5
Q ss_pred HhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEEE---------------ehhHHHHHHH
Q 027062 64 LKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV---------------CMGLQCIGEA 113 (229)
Q Consensus 64 l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlGI---------------C~G~Qlla~a 113 (229)
+...+.|++|+.||.++......+.+...+.+.++||.|| |+|+.-.+..
T Consensus 160 l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIGIPkTIDNDl~~~~id~s~GFdTA~~~ 224 (555)
T PRK07085 160 VKKLKLDGLVIIGGDDSNTNAAILAEYFAKHGCKTQVIGVPKTIDGDLKNEFIETSFGFDTATKT 224 (555)
T ss_pred HHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEEeeeecCCCCCCcccccCCHHHHHHH
Confidence 4455889999999988755444444433333345666654 9999877664
No 278
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=61.64 E-value=46 Score=27.92 Aligned_cols=51 Identities=18% Similarity=0.162 Sum_probs=30.8
Q ss_pred ceEEEEECCCch--------hHHHHHHHHHcCCEEEEEeCCccCHHHHhc-cCCCEEEEC
Q 027062 25 NPIIVIDNYDSF--------TYNLCQYMGELGYHFEVYRNDELTVEELKR-KNPRGVLIS 75 (229)
Q Consensus 25 ~~ilvid~~~~~--------~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~-~~~dgiii~ 75 (229)
|||+||=-+.|. ...+.++|++.|+++..+..+..-...+.. .++|.++..
T Consensus 1 ~~v~v~~gg~s~e~~~sl~s~~~i~~al~~~g~~~~~i~~~~~~~~~~~~~~~~D~v~~~ 60 (299)
T PRK14571 1 MRVALLMGGVSREREISLRSGERVKKALEKLGYEVTVFDVDEDFLKKVDQLKSFDVVFNV 60 (299)
T ss_pred CeEEEEeCCCCCCccchHHHHHHHHHHHHHcCCeEEEEccCchHHHHhhhccCCCEEEEe
Confidence 468888544332 135788899999999988754222222222 257866543
No 279
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=61.34 E-value=52 Score=23.67 Aligned_cols=40 Identities=13% Similarity=0.092 Sum_probs=29.2
Q ss_pred HHHHHHHHHcCCEEEEEeCCccCHHHHh----ccCCCEEEECCCC
Q 027062 38 YNLCQYMGELGYHFEVYRNDELTVEELK----RKNPRGVLISPGP 78 (229)
Q Consensus 38 ~~~~~~l~~~g~~~~v~~~~~~~~~~l~----~~~~dgiii~GG~ 78 (229)
..+..+|+..|+++.....+ .+.+++. +.++|.|.|++..
T Consensus 17 ~~~~~~l~~~G~~vi~lG~~-vp~e~~~~~a~~~~~d~V~iS~~~ 60 (122)
T cd02071 17 KVIARALRDAGFEVIYTGLR-QTPEEIVEAAIQEDVDVIGLSSLS 60 (122)
T ss_pred HHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEEcccc
Confidence 34667889999999988765 5555543 3488999998764
No 280
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=61.12 E-value=21 Score=26.43 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=21.3
Q ss_pred ceEEEEECC---CchhHHH----HHHHHHcCCEEEEEeCCc
Q 027062 25 NPIIVIDNY---DSFTYNL----CQYMGELGYHFEVYRNDE 58 (229)
Q Consensus 25 ~~ilvid~~---~~~~~~~----~~~l~~~g~~~~v~~~~~ 58 (229)
|||++|..- ++.+..+ .+.+++.|++++++...+
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~ 41 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLAD 41 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTT
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 688898642 2344444 444556699999987654
No 281
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=61.00 E-value=51 Score=22.62 Aligned_cols=86 Identities=10% Similarity=0.091 Sum_probs=48.0
Q ss_pred eEEEEECCCchhHHHHHHHHHcCCEEEEE--e-CCccCHHHHhcc--CCCEEEECCCCCCCCCcchHHHHHHHhCCCCcE
Q 027062 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVY--R-NDELTVEELKRK--NPRGVLISPGPGAPQDSGISLQTVLELGPTVPL 100 (229)
Q Consensus 26 ~ilvid~~~~~~~~~~~~l~~~g~~~~v~--~-~~~~~~~~l~~~--~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~Pv 100 (229)
+|+||...+.....+.+.+++.|.+.... . ........++.. +.|.||+.=+.-+-.......+.. ...++|+
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~a--kk~~ip~ 78 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAA--KKYGIPI 78 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHH--HHcCCcE
Confidence 47888865678889999999999999988 2 111111123321 569988875433211111111111 2345887
Q ss_pred EEEe-hhHHHHHHH
Q 027062 101 FGVC-MGLQCIGEA 113 (229)
Q Consensus 101 lGIC-~G~Qlla~a 113 (229)
+=.= .|..-|..+
T Consensus 79 ~~~~~~~~~~l~~~ 92 (97)
T PF10087_consen 79 IYSRSRGVSSLERA 92 (97)
T ss_pred EEECCCCHHHHHHH
Confidence 7543 455444443
No 282
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=60.93 E-value=65 Score=26.04 Aligned_cols=39 Identities=15% Similarity=0.196 Sum_probs=25.4
Q ss_pred HHHHHHHcCCEEEEEeCCccCHHH----HhccCCCEEEECCCC
Q 027062 40 LCQYMGELGYHFEVYRNDELTVEE----LKRKNPRGVLISPGP 78 (229)
Q Consensus 40 ~~~~l~~~g~~~~v~~~~~~~~~~----l~~~~~dgiii~GG~ 78 (229)
+.+.+++.|+++.+...+...... +...++||||+.+..
T Consensus 32 i~~~~~~~g~~~~v~~~~~~~~~~~~~~l~~~~~dgiii~~~~ 74 (275)
T cd06295 32 IADALAERGYDLLLSFVSSPDRDWLARYLASGRADGVILIGQH 74 (275)
T ss_pred HHHHHHHcCCEEEEEeCCchhHHHHHHHHHhCCCCEEEEeCCC
Confidence 667778889999887654221222 223479999997643
No 283
>PRK09191 two-component response regulator; Provisional
Probab=60.79 E-value=53 Score=26.46 Aligned_cols=82 Identities=15% Similarity=0.151 Sum_probs=45.4
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCC-ccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEE
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND-ELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF 101 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~-~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~Pvl 101 (229)
...+|+++|....+...+...++..|..+.....+ ....+.+....+|.+|+--....-.+.-..++.++... .+|++
T Consensus 136 ~~~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~~~~dlvi~d~~~~~~~~g~e~l~~l~~~~-~~pii 214 (261)
T PRK09191 136 VATRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKKTRPGLILADIQLADGSSGIDAVNDILKTF-DVPVI 214 (261)
T ss_pred CCCeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHHHhC-CCCEE
Confidence 35679999976556677888888888876532222 11122333346888877432110011123344554444 68888
Q ss_pred EEeh
Q 027062 102 GVCM 105 (229)
Q Consensus 102 GIC~ 105 (229)
-+.-
T Consensus 215 ~ls~ 218 (261)
T PRK09191 215 FITA 218 (261)
T ss_pred EEeC
Confidence 6543
No 284
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=60.62 E-value=19 Score=28.67 Aligned_cols=77 Identities=13% Similarity=0.147 Sum_probs=44.1
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCc-chHHHHHHHhCCCCcEEEE
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFGV 103 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~-~~~~~~i~~~~~~~PvlGI 103 (229)
++|++++........+...|+..|+.+............+....+|.+|+--. .+... -.+.+.+++. ...|++-+
T Consensus 2 ~~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~~~dlvild~~--l~~~~g~~~~~~ir~~-~~~pii~l 78 (240)
T PRK10701 2 NKIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILREQPDLVLLDIM--LPGKDGMTICRDLRPK-WQGPIVLL 78 (240)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhhCCCCEEEEeCC--CCCCCHHHHHHHHHhc-CCCCEEEE
Confidence 47999997655667788889889988775542211122333346888777321 22222 2344555542 34677655
Q ss_pred e
Q 027062 104 C 104 (229)
Q Consensus 104 C 104 (229)
.
T Consensus 79 ~ 79 (240)
T PRK10701 79 T 79 (240)
T ss_pred E
Confidence 4
No 285
>PRK05569 flavodoxin; Provisional
Probab=60.49 E-value=64 Score=23.54 Aligned_cols=50 Identities=16% Similarity=0.171 Sum_probs=30.4
Q ss_pred eEEEE-ECCCchhHHHHHH----HHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCC
Q 027062 26 PIIVI-DNYDSFTYNLCQY----MGELGYHFEVYRNDELTVEELKRKNPRGVLISPGP 78 (229)
Q Consensus 26 ~ilvi-d~~~~~~~~~~~~----l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~ 78 (229)
+|+|+ ....+.+..+++. +++.|+++.+....+.+..++. ++|+|+| |.|
T Consensus 3 ki~iiY~S~tGnT~~iA~~i~~~~~~~g~~v~~~~~~~~~~~~~~--~~d~iil-gsP 57 (141)
T PRK05569 3 KVSIIYWSCGGNVEVLANTIADGAKEAGAEVTIKHVADAKVEDVL--EADAVAF-GSP 57 (141)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHhCCCeEEEEECCcCCHHHHh--hCCEEEE-ECC
Confidence 45555 3334455555554 4456888888876655555665 5688876 444
No 286
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=60.01 E-value=49 Score=26.46 Aligned_cols=41 Identities=12% Similarity=0.246 Sum_probs=26.3
Q ss_pred HHHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCCC
Q 027062 38 YNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGP 78 (229)
Q Consensus 38 ~~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG~ 78 (229)
..+.+.+++.|+.+.+...+.... +.+...++||||+.+..
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~ 65 (268)
T cd01575 19 QGISDVLEAAGYQLLLGNTGYSPEREEELLRTLLSRRPAGLILTGLE 65 (268)
T ss_pred HHHHHHHHHcCCEEEEecCCCCchhHHHHHHHHHHcCCCEEEEeCCC
Confidence 346677888999998876532111 12333479999998743
No 287
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=59.85 E-value=7.7 Score=34.91 Aligned_cols=50 Identities=18% Similarity=0.304 Sum_probs=31.9
Q ss_pred HhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEE-------------EehhHHHHHHH
Q 027062 64 LKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG-------------VCMGLQCIGEA 113 (229)
Q Consensus 64 l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlG-------------IC~G~Qlla~a 113 (229)
|+..++|++++-||.++......+.+.+.+.+-+++|.| -|+|++-....
T Consensus 168 L~~~~I~~L~vIGGdgT~~gA~~l~ee~~~~g~~I~VIGIPKTIDNDi~~td~S~GFdTAv~~ 230 (443)
T PRK06830 168 LERMNINILFVIGGDGTLRGASAIAEEIERRGLKISVIGIPKTIDNDINFIQKSFGFETAVEK 230 (443)
T ss_pred HHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCcCcccCCCHHHHHHH
Confidence 455578999999998865444444444433333355555 49999987653
No 288
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=59.75 E-value=42 Score=26.61 Aligned_cols=44 Identities=14% Similarity=0.112 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHcCCE---E--EEEeCCccCH-HHHhc----cCCCEEEECCCCC
Q 027062 36 FTYNLCQYMGELGYH---F--EVYRNDELTV-EELKR----KNPRGVLISPGPG 79 (229)
Q Consensus 36 ~~~~~~~~l~~~g~~---~--~v~~~~~~~~-~~l~~----~~~dgiii~GG~~ 79 (229)
....+..++++.|.+ + .+++.+.... +.+.. .++|.||.+||.+
T Consensus 24 ng~~L~~~L~~~G~~g~~v~~~iVpDd~~~I~~aL~~a~~~~~~DlIITTGGtg 77 (193)
T PRK09417 24 GIPALEEWLASALTSPFEIETRLIPDEQDLIEQTLIELVDEMGCDLVLTTGGTG 77 (193)
T ss_pred hHHHHHHHHHHcCCCCceEEEEECCCCHHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 345688889988643 2 2333221111 12222 2589999999855
No 289
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=59.69 E-value=35 Score=25.10 Aligned_cols=50 Identities=16% Similarity=0.172 Sum_probs=23.5
Q ss_pred ceEEEE-ECCCchhHHHH----HHHHHcCCEEE-EEeCCcc--CHHHHhccCCCEEEECC
Q 027062 25 NPIIVI-DNYDSFTYNLC----QYMGELGYHFE-VYRNDEL--TVEELKRKNPRGVLISP 76 (229)
Q Consensus 25 ~~ilvi-d~~~~~~~~~~----~~l~~~g~~~~-v~~~~~~--~~~~l~~~~~dgiii~G 76 (229)
|+++|| ....+.++.++ +.++..|.++. +.+..+. ...++. ++|.|+|..
T Consensus 1 M~i~IiY~S~tGnTe~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~--~~d~iilgs 58 (140)
T TIGR01754 1 MRILLAYLSLSGNTEEVAFMIQDYLQKDGHEVDILHRIGTLADAPLDPE--NYDLVFLGT 58 (140)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHhhCCeeEEecccccccccCcCChh--hCCEEEEEc
Confidence 456665 32334454444 44555677776 2322211 111232 568877644
No 290
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=59.52 E-value=21 Score=27.89 Aligned_cols=77 Identities=9% Similarity=0.173 Sum_probs=43.6
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCc-chHHHHHHHhCCCCcEEEE
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFGV 103 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~-~~~~~~i~~~~~~~PvlGI 103 (229)
.+|+++|........+...|+..|..+............+....+|.+++--. .+... -...+.+++. ...|++-+
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~--l~~~~g~~~~~~lr~~-~~~pvi~l 78 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLG--LPDGDGIEFIRDLRQW-SAIPVIVL 78 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHcC-CCCCEEEE
Confidence 47999997655667788889888987765432211122233335788877322 11122 2334455443 45787765
Q ss_pred e
Q 027062 104 C 104 (229)
Q Consensus 104 C 104 (229)
-
T Consensus 79 t 79 (225)
T PRK10529 79 S 79 (225)
T ss_pred E
Confidence 3
No 291
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=59.16 E-value=8.6 Score=35.74 Aligned_cols=50 Identities=8% Similarity=0.179 Sum_probs=32.0
Q ss_pred HhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEE---------------EehhHHHHHHH
Q 027062 64 LKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG---------------VCMGLQCIGEA 113 (229)
Q Consensus 64 l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlG---------------IC~G~Qlla~a 113 (229)
+...+.|++|+.||.++......+.+...+.+.+++|.| .|+|+.-.+..
T Consensus 186 l~~l~Id~LViIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDL~~td~e~s~GFdTA~k~ 250 (568)
T PLN02251 186 ATKLDLDGLVVIGGDDSNTNACLLAEYFRAKNLKTRVIGCPKTIDGDLKSKEVPTSFGFDTACKI 250 (568)
T ss_pred HHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCeeEEEeCceEeCCCCCCcCCCCCCHHHHHHH
Confidence 444578999999998876544444443333333455555 39999887764
No 292
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=58.75 E-value=34 Score=26.09 Aligned_cols=80 Identities=20% Similarity=0.318 Sum_probs=47.1
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCc---c-hHHHHHHHhCCCC
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS---G-ISLQTVLELGPTV 98 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~---~-~~~~~i~~~~~~~ 98 (229)
..-..++||. ++-...+++.|.... .+.++-+.-.-...+....---++++||...+... + ...+.+..+.-++
T Consensus 18 ~~~~~Ifld~-GtT~~~la~~L~~~~-~ltVvTnsl~ia~~l~~~~~~~vi~~GG~~~~~~~~~~G~~a~~~l~~~~~d~ 95 (161)
T PF00455_consen 18 EDGDTIFLDS-GTTTLELAKYLPDKK-NLTVVTNSLPIANELSENPNIEVILLGGEVNPKSLSFVGPIALEALRQFRFDK 95 (161)
T ss_pred CCCCEEEEEC-chHHHHHHHHhhcCC-ceEEEECCHHHHHHHHhcCceEEEEeCCEEEcCCCcEECchHHHHHHhhccce
Confidence 3445789997 455667778887663 55556544222234444323468888986554332 2 2356666665567
Q ss_pred cEEEEe
Q 027062 99 PLFGVC 104 (229)
Q Consensus 99 PvlGIC 104 (229)
-++|+|
T Consensus 96 afi~~~ 101 (161)
T PF00455_consen 96 AFIGAD 101 (161)
T ss_pred EEeccc
Confidence 777766
No 293
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=58.57 E-value=8.6 Score=36.04 Aligned_cols=50 Identities=16% Similarity=0.201 Sum_probs=30.7
Q ss_pred HhccCCCEEEECCCCCCCCCcchHHHHHHHh-------------CCCCc--EEEEehhHHHHHHH
Q 027062 64 LKRKNPRGVLISPGPGAPQDSGISLQTVLEL-------------GPTVP--LFGVCMGLQCIGEA 113 (229)
Q Consensus 64 l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~-------------~~~~P--vlGIC~G~Qlla~a 113 (229)
+++.++|++|+-||.++......+.+...+. +++++ ..=.|+|+.-.+..
T Consensus 169 l~~l~Id~LvvIGGddS~~~A~~Lae~~~~~~~~i~VIGIPKTIDNDL~~~~td~s~GFdTA~k~ 233 (610)
T PLN03028 169 CEALKLDGLVIIGGVTSNTDAAQLAETFAEAKCKTKVVGVPVTLNGDLKNQFVETNVGFDTICKV 233 (610)
T ss_pred HHHcCCCEEEEeCCchHHHHHHHHHHHHHHcCCCceEEEeceeeeCCCCCCCCCCCcCHHHHHHH
Confidence 4445789999999988765444443333322 33333 34468999887653
No 294
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=58.15 E-value=69 Score=25.07 Aligned_cols=81 Identities=10% Similarity=0.201 Sum_probs=43.4
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCC-EEEEEeCCc-cCHHHHhccCCCEEEECCC-CCCC-CCcchHHHHHHHhCCCCc
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGY-HFEVYRNDE-LTVEELKRKNPRGVLISPG-PGAP-QDSGISLQTVLELGPTVP 99 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~-~~~v~~~~~-~~~~~l~~~~~dgiii~GG-~~~~-~~~~~~~~~i~~~~~~~P 99 (229)
.++|+|+|........+.+.|+..+. .+.....+. ...+.+....+|.+++--. ++.. .+.-..++.++......|
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~~~ 82 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLS 82 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhCCCCEEEEeCcCCCCCCCCHHHHHHHHHHHCCCCc
Confidence 36899999866667778888877654 322222111 1112233336888877321 1100 012234556655555678
Q ss_pred EEEEe
Q 027062 100 LFGVC 104 (229)
Q Consensus 100 vlGIC 104 (229)
++-+.
T Consensus 83 iIvls 87 (216)
T PRK10840 83 IIVLT 87 (216)
T ss_pred EEEEE
Confidence 88775
No 295
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=58.12 E-value=59 Score=26.28 Aligned_cols=41 Identities=7% Similarity=0.162 Sum_probs=26.7
Q ss_pred hHHHHHHHHHcCCEEEEEeCCccCHH------HHhccCCCEEEECCC
Q 027062 37 TYNLCQYMGELGYHFEVYRNDELTVE------ELKRKNPRGVLISPG 77 (229)
Q Consensus 37 ~~~~~~~l~~~g~~~~v~~~~~~~~~------~l~~~~~dgiii~GG 77 (229)
...+.+++++.|+++.+...+..... .+...++||||+.+.
T Consensus 18 ~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 64 (273)
T cd06309 18 TKSIKDAAEKRGFDLKFADAQQKQENQISAIRSFIAQGVDVIILAPV 64 (273)
T ss_pred HHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 34577778889999998865421111 222337999999764
No 296
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=58.00 E-value=66 Score=30.90 Aligned_cols=82 Identities=15% Similarity=0.147 Sum_probs=49.9
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhC--CC-C
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELG--PT-V 98 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~-~~~~~i~~~~--~~-~ 98 (229)
...+|+|+|........+.+.|+..|+.+..........+.+....||.|++- ...+...+ ...+.+++.. .. .
T Consensus 524 ~~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~Dlvl~D--~~mp~~~G~e~~~~ir~~~~~~~~~ 601 (779)
T PRK11091 524 PALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMFDPDEYDLVLLD--IQLPDMTGLDIARELRERYPREDLP 601 (779)
T ss_pred cccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhcCCCCEEEEc--CCCCCCCHHHHHHHHHhccccCCCC
Confidence 35789999976556677888899999988766532222233333467877662 12233233 3456666543 44 4
Q ss_pred cEEEEehh
Q 027062 99 PLFGVCMG 106 (229)
Q Consensus 99 PvlGIC~G 106 (229)
|++.++..
T Consensus 602 ~ii~~ta~ 609 (779)
T PRK11091 602 PLVALTAN 609 (779)
T ss_pred cEEEEECC
Confidence 88888753
No 297
>PRK13055 putative lipid kinase; Reviewed
Probab=57.82 E-value=27 Score=30.09 Aligned_cols=57 Identities=12% Similarity=0.175 Sum_probs=33.9
Q ss_pred ceEEEEECCCc-h------hHHHHHHHHHcCCEEEEEeCC--ccCHHH----HhccCCCEEEECCCCCCC
Q 027062 25 NPIIVIDNYDS-F------TYNLCQYMGELGYHFEVYRND--ELTVEE----LKRKNPRGVLISPGPGAP 81 (229)
Q Consensus 25 ~~ilvid~~~~-~------~~~~~~~l~~~g~~~~v~~~~--~~~~~~----l~~~~~dgiii~GG~~~~ 81 (229)
++++||-|..+ . ...+.+.|++.|+++.++... .....+ ....++|.||+.||-|+.
T Consensus 3 ~r~~iI~NP~sG~~~~~~~~~~i~~~l~~~g~~~~i~~t~~~~~~a~~~~~~~~~~~~d~vvv~GGDGTl 72 (334)
T PRK13055 3 KRARLIYNPTSGQEIMKKNVADILDILEQAGYETSAFQTTPEPNSAKNEAKRAAEAGFDLIIAAGGDGTI 72 (334)
T ss_pred ceEEEEECCCCCchhHHHHHHHHHHHHHHcCCeEEEEEeecCCccHHHHHHHHhhcCCCEEEEECCCCHH
Confidence 57777766322 1 123567788889987765432 112222 222368999999997753
No 298
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=57.73 E-value=35 Score=23.89 Aligned_cols=85 Identities=19% Similarity=0.229 Sum_probs=47.4
Q ss_pred CCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCc-cCHHHHhcc-CCCEEEECCCCCCCCCcchHHHHHHHhCCCCc
Q 027062 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDE-LTVEELKRK-NPRGVLISPGPGAPQDSGISLQTVLELGPTVP 99 (229)
Q Consensus 22 ~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~-~~~~~l~~~-~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~P 99 (229)
....+|+++|........+.+.|+..|..+....... ...+.+... .+|.+++--. ....+-....+.+++.....|
T Consensus 3 ~~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~~~~~dlii~D~~-mp~~~G~~~~~~l~~~~~~~p 81 (130)
T COG0784 3 LSGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELPQPDLILLDIN-MPGMDGIELLRRLRARGPNIP 81 (130)
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHhCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCCCC
Confidence 3567899999744556778888999997776665331 222333333 3788666332 111122234455555445577
Q ss_pred EEEEehhHH
Q 027062 100 LFGVCMGLQ 108 (229)
Q Consensus 100 vlGIC~G~Q 108 (229)
+ -++-|..
T Consensus 82 v-v~~t~~~ 89 (130)
T COG0784 82 V-ILLTAYA 89 (130)
T ss_pred E-EEEEcCc
Confidence 4 4444433
No 299
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=57.71 E-value=99 Score=26.18 Aligned_cols=89 Identities=11% Similarity=0.117 Sum_probs=52.5
Q ss_pred CceEEEEECCCchh----HHHHHHHHH--cCCEEEEE---eCCc-cC----HHHHhccCCCEEEECCCCCCCCCcchHHH
Q 027062 24 KNPIIVIDNYDSFT----YNLCQYMGE--LGYHFEVY---RNDE-LT----VEELKRKNPRGVLISPGPGAPQDSGISLQ 89 (229)
Q Consensus 24 ~~~ilvid~~~~~~----~~~~~~l~~--~g~~~~v~---~~~~-~~----~~~l~~~~~dgiii~GG~~~~~~~~~~~~ 89 (229)
.+++.+|...+.+. ..+.+.+++ .|.++... +... .+ ...+...++|.|++.+.+. +...+.+
T Consensus 143 ~k~v~i~~~~~~~g~~~~~~~~~~~~~~~~G~~vv~~~~~~~~~~~d~~~~i~~l~~~~~d~v~~~~~~~---~~~~~~~ 219 (342)
T cd06329 143 GKKVYLINQDYSWGQDVAAAFKAMLAAKRPDIQIVGEDLHPLGKVKDFSPYVAKIKASGADTVITGNWGN---DLLLLVK 219 (342)
T ss_pred CceEEEEeCChHHHHHHHHHHHHHHHhhcCCcEEeceeccCCCCCCchHHHHHHHHHcCCCEEEEcccCc---hHHHHHH
Confidence 56788886434443 446677888 88887532 2221 11 2344555789999976432 3345667
Q ss_pred HHHHhCCCCcEEEEehhHHHHHHHhC
Q 027062 90 TVLELGPTVPLFGVCMGLQCIGEAFG 115 (229)
Q Consensus 90 ~i~~~~~~~PvlGIC~G~Qlla~alG 115 (229)
.+++.+-..|+++...+..-+...+|
T Consensus 220 ~~~~~g~~~~~~~~~~~~~~~~~~~g 245 (342)
T cd06329 220 QAADAGLKLPFYTPYLDQPGNPAALG 245 (342)
T ss_pred HHHHcCCCceEEeccccchhHHHhhc
Confidence 77776666888886544433445444
No 300
>PRK09483 response regulator; Provisional
Probab=57.60 E-value=56 Score=25.19 Aligned_cols=78 Identities=13% Similarity=0.142 Sum_probs=43.1
Q ss_pred ceEEEEECCCchhHHHHHHHHHc-CCEEEEEeCC-ccCHHHHhccCCCEEEECCCCCCCCCc-chHHHHHHHhCCCCcEE
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYRND-ELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLF 101 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~-g~~~~v~~~~-~~~~~~l~~~~~dgiii~GG~~~~~~~-~~~~~~i~~~~~~~Pvl 101 (229)
++|+|+|........+.+.|+.. ++++...-.+ ......+....+|.+|+--. .+... ..+++.+++.....|++
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~--~~~~~g~~~~~~l~~~~~~~~ii 79 (217)
T PRK09483 2 INVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRTNAVDVVLMDMN--MPGIGGLEATRKILRYTPDVKII 79 (217)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHhcCCCEEEEeCC--CCCCCHHHHHHHHHHHCCCCeEE
Confidence 57999997655666788888764 6766432222 11112233346787766321 11112 23455565555667877
Q ss_pred EEe
Q 027062 102 GVC 104 (229)
Q Consensus 102 GIC 104 (229)
-+.
T Consensus 80 ~ls 82 (217)
T PRK09483 80 MLT 82 (217)
T ss_pred EEe
Confidence 665
No 301
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=57.45 E-value=21 Score=28.12 Aligned_cols=24 Identities=21% Similarity=0.491 Sum_probs=16.6
Q ss_pred HHHhCCCCcEEEEehhHHHHHHHh
Q 027062 91 VLELGPTVPLFGVCMGLQCIGEAF 114 (229)
Q Consensus 91 i~~~~~~~PvlGIC~G~Qlla~al 114 (229)
+.+...+++++|+|.|.|-+...+
T Consensus 154 ~~r~~~~~k~vGlCh~~~~~~~~l 177 (183)
T PF02056_consen 154 LSRYTPKIKVVGLCHGPQGTRRQL 177 (183)
T ss_dssp HHHHSTTSEEEEE-SHHHHHHHHH
T ss_pred HHHhCCCCCEEEECCCHHHHHHHH
Confidence 333445699999999999876653
No 302
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=57.42 E-value=83 Score=27.79 Aligned_cols=62 Identities=16% Similarity=0.267 Sum_probs=38.5
Q ss_pred ceEEEE-ECC---CchhHHHHHHHHHcCCEEEEEeCCc--cCH-------HHHhccCCCEEEECCCCCCCCCcchH
Q 027062 25 NPIIVI-DNY---DSFTYNLCQYMGELGYHFEVYRNDE--LTV-------EELKRKNPRGVLISPGPGAPQDSGIS 87 (229)
Q Consensus 25 ~~ilvi-d~~---~~~~~~~~~~l~~~g~~~~v~~~~~--~~~-------~~l~~~~~dgiii~GG~~~~~~~~~~ 87 (229)
.|++|| |.. .++...+.+.|+..|+++.++..-. .+. +.+.+.++|.||=.||. |+-|..+.
T Consensus 30 ~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~~~~~~D~iIalGGG-S~~D~AK~ 104 (377)
T COG1454 30 KRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVAREFGPDTIIALGGG-SVIDAAKA 104 (377)
T ss_pred CceEEEECCccccchhHHHHHHHHHhcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCc-cHHHHHHH
Confidence 566666 432 2256778888999998888775321 111 22444589999998874 45454443
No 303
>PRK10651 transcriptional regulator NarL; Provisional
Probab=57.27 E-value=72 Score=24.28 Aligned_cols=85 Identities=14% Similarity=0.111 Sum_probs=44.1
Q ss_pred ccCCCceEEEEECCCchhHHHHHHHHHc-CCEEEE-EeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCC
Q 027062 20 SKNNKNPIIVIDNYDSFTYNLCQYMGEL-GYHFEV-YRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPT 97 (229)
Q Consensus 20 ~~~~~~~ilvid~~~~~~~~~~~~l~~~-g~~~~v-~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~ 97 (229)
+++...+|++++........+.++++.. ++.+.. ..........+....+|.+++--.... .+.-...+.++.....
T Consensus 2 ~~~~~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~d~~l~~-~~~~~~~~~l~~~~~~ 80 (216)
T PRK10651 2 SNQEPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNMPG-MNGLETLDKLREKSLS 80 (216)
T ss_pred CCCcceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHhCCCCEEEEeCCCCC-CcHHHHHHHHHHhCCC
Confidence 4566788999997555666677777654 444332 221111112233335787776322111 1112344555555456
Q ss_pred CcEEEEeh
Q 027062 98 VPLFGVCM 105 (229)
Q Consensus 98 ~PvlGIC~ 105 (229)
.|++-++.
T Consensus 81 ~~vi~l~~ 88 (216)
T PRK10651 81 GRIVVFSV 88 (216)
T ss_pred CcEEEEeC
Confidence 77777653
No 304
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=57.07 E-value=40 Score=34.16 Aligned_cols=82 Identities=15% Similarity=0.245 Sum_probs=48.8
Q ss_pred cCCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCCCc
Q 027062 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVP 99 (229)
Q Consensus 21 ~~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~-~~~~~i~~~~~~~P 99 (229)
+..+++|+|||........+.+.|+..|+++..........+.+....+|.|++- - ..+...+ ...+.+++.....|
T Consensus 955 ~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlil~D-~-~mp~~~g~~~~~~i~~~~~~~p 1032 (1197)
T PRK09959 955 LPEKLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITD-V-NMPNMDGFELTRKLREQNSSLP 1032 (1197)
T ss_pred cccCceEEEcCCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhcCCCCEEEEe-C-CCCCCCHHHHHHHHHhcCCCCC
Confidence 3456789999975555667888899999987655432112233334467877652 1 2222222 34556665556688
Q ss_pred EEEEe
Q 027062 100 LFGVC 104 (229)
Q Consensus 100 vlGIC 104 (229)
++.+-
T Consensus 1033 ii~lt 1037 (1197)
T PRK09959 1033 IWGLT 1037 (1197)
T ss_pred EEEEE
Confidence 88763
No 305
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=56.43 E-value=59 Score=26.06 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=26.1
Q ss_pred HHHHHHHHHcCCEEEEEeCCccCH---H----HHhccCCCEEEECCCC
Q 027062 38 YNLCQYMGELGYHFEVYRNDELTV---E----ELKRKNPRGVLISPGP 78 (229)
Q Consensus 38 ~~~~~~l~~~g~~~~v~~~~~~~~---~----~l~~~~~dgiii~GG~ 78 (229)
..+.+++++.|+++.+...+.... . .+...++||||+.+..
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~ 66 (270)
T cd01545 19 LGALDACRDTGYQLVIEPCDSGSPDLAERVRALLQRSRVDGVILTPPL 66 (270)
T ss_pred HHHHHHHHhCCCeEEEEeCCCCchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 345677788899998876543221 1 1223478999998653
No 306
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=56.16 E-value=41 Score=28.71 Aligned_cols=55 Identities=13% Similarity=-0.025 Sum_probs=33.2
Q ss_pred CCceEEEEEC--CCchh----HHHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCC
Q 027062 23 NKNPIIVIDN--YDSFT----YNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (229)
Q Consensus 23 ~~~~ilvid~--~~~~~----~~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG 77 (229)
.+.+|.++-. .+.|. ..+.+++++.|+.+.+...+.... +.+...++||||+.+.
T Consensus 24 ~~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vDGiIi~~~ 90 (330)
T PRK10355 24 KEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPY 90 (330)
T ss_pred CCceEEEEecCCCchHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4566766642 23343 346677778899999886542111 1233348999999863
No 307
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=55.93 E-value=27 Score=31.80 Aligned_cols=61 Identities=10% Similarity=0.148 Sum_probs=35.8
Q ss_pred CCCceEEEEECC-Cch---h----HHHHHHHHHcCCEEEEEeCCc-cCH----HHHhccCCCEEEECCCCCCCC
Q 027062 22 NNKNPIIVIDNY-DSF---T----YNLCQYMGELGYHFEVYRNDE-LTV----EELKRKNPRGVLISPGPGAPQ 82 (229)
Q Consensus 22 ~~~~~ilvid~~-~~~---~----~~~~~~l~~~g~~~~v~~~~~-~~~----~~l~~~~~dgiii~GG~~~~~ 82 (229)
...++++||=|. ++- . ..+...|+..|+++.++.... ... .++...++|+||+.||-|..+
T Consensus 109 ~~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~gi~~~v~~T~~~ghA~~la~~~~~~~~D~VV~vGGDGTln 182 (481)
T PLN02958 109 GRPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDADIQLTIQETKYQLHAKEVVRTMDLSKYDGIVCVSGDGILV 182 (481)
T ss_pred cCCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcCCeEEEEeccCccHHHHHHHHhhhcCCCEEEEEcCCCHHH
Confidence 345567776553 221 1 224457888999988765321 111 122233689999999988653
No 308
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=55.59 E-value=75 Score=22.85 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=23.8
Q ss_pred HHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECC
Q 027062 40 LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISP 76 (229)
Q Consensus 40 ~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~G 76 (229)
+.+.+++.|+++.+....+.+..++. ++|+||+..
T Consensus 19 i~~~~~~~g~~v~~~~~~~~~~~~l~--~~d~iilgs 53 (140)
T TIGR01753 19 IAEGLKEAGAEVDLLEVADADAEDLL--SYDAVLLGC 53 (140)
T ss_pred HHHHHHhcCCeEEEEEcccCCHHHHh--cCCEEEEEc
Confidence 44455567889988887656666666 458887644
No 309
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=55.42 E-value=21 Score=29.90 Aligned_cols=58 Identities=16% Similarity=0.133 Sum_probs=32.7
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeC---CccCHHHH----hccCCCEEEECCCCCCCC
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN---DELTVEEL----KRKNPRGVLISPGPGAPQ 82 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~---~~~~~~~l----~~~~~dgiii~GG~~~~~ 82 (229)
|||||+...+..-..+.+.+++.|.++..... |-.+.+.+ ...++|.||-+.+..++.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~dl~d~~~~~~~~~~~~pd~Vin~aa~~~~~ 65 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDLDLTDPEAVAKLLEAFKPDVVINCAAYTNVD 65 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS-TTSHHHHHHHHHHH--SEEEE------HH
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcCCCCHHHHHHHHHHhCCCeEeccceeecHH
Confidence 79999996444456788999998888776632 21222332 233799999998766543
No 310
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=54.91 E-value=11 Score=34.95 Aligned_cols=50 Identities=12% Similarity=0.263 Sum_probs=31.1
Q ss_pred HhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEEE---------------ehhHHHHHHH
Q 027062 64 LKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV---------------CMGLQCIGEA 113 (229)
Q Consensus 64 l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlGI---------------C~G~Qlla~a 113 (229)
+.+.++|++|+-||.++......+.+...+.+..++|.|| |+|+.-.+..
T Consensus 162 l~~~~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~t~id~s~GFdTA~k~ 226 (550)
T cd00765 162 AKKLDLDALVVIGGDDSNTNAALLAENFRSKGLKTRVIGVPKTIDGDLKNKEIETSFGFDTATKI 226 (550)
T ss_pred HHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHHH
Confidence 4445789999999987654444433333333333566554 8999877664
No 311
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=54.51 E-value=71 Score=25.73 Aligned_cols=40 Identities=20% Similarity=0.283 Sum_probs=26.1
Q ss_pred HHHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCC
Q 027062 38 YNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (229)
Q Consensus 38 ~~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG 77 (229)
..+.+++++.|+.+.+...+..+. +.+...++||+|+.+.
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 64 (273)
T cd06292 19 EAIEAALAQYGYTVLLCNTYRGGVSEADYVEDLLARGVRGVVFISS 64 (273)
T ss_pred HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCC
Confidence 456777888999998776432111 2233447999999764
No 312
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=54.41 E-value=63 Score=26.04 Aligned_cols=41 Identities=15% Similarity=0.305 Sum_probs=26.4
Q ss_pred HHHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCCC
Q 027062 38 YNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGP 78 (229)
Q Consensus 38 ~~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG~ 78 (229)
..+.+.+++.|+++.+...+..+. +.+...++||+|+.++.
T Consensus 19 ~~i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~ 65 (269)
T cd06281 19 SGAEDRLRAAGYSLLIANSLNDPERELEILRSFEQRRMDGIIIAPGD 65 (269)
T ss_pred HHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCC
Confidence 446677888899988775432121 12333478999998753
No 313
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=54.32 E-value=86 Score=28.40 Aligned_cols=33 Identities=18% Similarity=0.196 Sum_probs=23.9
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEEEEeC
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN 56 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~ 56 (229)
..++|+|+..+.+ -..++++|.+.|+.+.+...
T Consensus 14 ~~~~v~v~G~G~s-G~a~a~~L~~~G~~V~~~D~ 46 (473)
T PRK00141 14 LSGRVLVAGAGVS-GRGIAAMLSELGCDVVVADD 46 (473)
T ss_pred cCCeEEEEccCHH-HHHHHHHHHHCCCEEEEECC
Confidence 3446999997543 33788899999998777653
No 314
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=54.28 E-value=35 Score=29.16 Aligned_cols=79 Identities=15% Similarity=0.206 Sum_probs=46.3
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCCCcEEEE
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV 103 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~-~~~~~i~~~~~~~PvlGI 103 (229)
++|+|+|........+...|.+.|..+.-+.......+.++..++|.+++- --.+++.+ .+.+.++++...+||.-|
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~~kpDLifld--I~mp~~ngiefaeQvr~i~~~v~iifI 78 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVFKPDLIFLD--IVMPYMNGIEFAEQVRDIESAVPIIFI 78 (361)
T ss_pred CcEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHhcCCCEEEEE--eecCCccHHHHHHHHHHhhccCcEEEE
Confidence 578999974445566777888888333322222122334444578887652 11222322 466777777778888887
Q ss_pred eh
Q 027062 104 CM 105 (229)
Q Consensus 104 C~ 105 (229)
--
T Consensus 79 ss 80 (361)
T COG3947 79 SS 80 (361)
T ss_pred ec
Confidence 64
No 315
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=54.17 E-value=1.1e+02 Score=27.76 Aligned_cols=33 Identities=15% Similarity=0.234 Sum_probs=26.1
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCC
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND 57 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~ 57 (229)
.++|+|+..+.+ -...+++|.+.|+++.+....
T Consensus 7 ~~kv~V~GLG~s-G~a~a~~L~~~G~~v~v~D~~ 39 (448)
T COG0771 7 GKKVLVLGLGKS-GLAAARFLLKLGAEVTVSDDR 39 (448)
T ss_pred CCEEEEEecccc-cHHHHHHHHHCCCeEEEEcCC
Confidence 788999998433 357889999999999888643
No 316
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=53.98 E-value=63 Score=25.52 Aligned_cols=71 Identities=13% Similarity=0.126 Sum_probs=41.4
Q ss_pred CceEEEEECCCch----hHHHHHHHHHcCCEEEEEeCCccCHHHHh----ccCCCEEEECCCCCCC-CCcchHHHHHHHh
Q 027062 24 KNPIIVIDNYDSF----TYNLCQYMGELGYHFEVYRNDELTVEELK----RKNPRGVLISPGPGAP-QDSGISLQTVLEL 94 (229)
Q Consensus 24 ~~~ilvid~~~~~----~~~~~~~l~~~g~~~~v~~~~~~~~~~l~----~~~~dgiii~GG~~~~-~~~~~~~~~i~~~ 94 (229)
+.+|++--..+.. ...+...|+..|+++.....+ .+.+++. ..++|.|.+|...... .....+++.+++.
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~-~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~lr~~ 160 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRD-VPPEEFVEAVKEHKPDILGLSALMTTTMGGMKEVIEALKEA 160 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHC
Confidence 4566555332221 244677889999999776654 5666654 3489999888643222 1223345555555
Q ss_pred C
Q 027062 95 G 95 (229)
Q Consensus 95 ~ 95 (229)
.
T Consensus 161 ~ 161 (201)
T cd02070 161 G 161 (201)
T ss_pred C
Confidence 4
No 317
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=53.93 E-value=84 Score=25.01 Aligned_cols=75 Identities=20% Similarity=0.298 Sum_probs=46.7
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhcc---CCCEEEECCCCCCCCCcc-hHHHHHHHhCCCCc
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRK---NPRGVLISPGPGAPQDSG-ISLQTVLELGPTVP 99 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~---~~dgiii~GG~~~~~~~~-~~~~~i~~~~~~~P 99 (229)
.+.|.|+|-..+....+...|+..|+++..+... +++... +-.|.+|+-= ..|...+ .+...+.+.+..+|
T Consensus 4 ~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~----~~fL~~~~~~~pGclllDv-rMPg~sGlelq~~L~~~~~~~P 78 (202)
T COG4566 4 EPLVHVVDDDESVRDALAFLLESAGFQVKCFASA----EEFLAAAPLDRPGCLLLDV-RMPGMSGLELQDRLAERGIRLP 78 (202)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHhCCceeeeecCH----HHHHhhccCCCCCeEEEec-CCCCCchHHHHHHHHhcCCCCC
Confidence 4568899976678888999999999999877643 333221 1124444321 1222233 35566677778889
Q ss_pred EEEE
Q 027062 100 LFGV 103 (229)
Q Consensus 100 vlGI 103 (229)
|.-|
T Consensus 79 VIfi 82 (202)
T COG4566 79 VIFL 82 (202)
T ss_pred EEEE
Confidence 7765
No 318
>PLN02564 6-phosphofructokinase
Probab=53.55 E-value=11 Score=34.27 Aligned_cols=49 Identities=18% Similarity=0.364 Sum_probs=32.2
Q ss_pred HhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEEE-------------ehhHHHHHH
Q 027062 64 LKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV-------------CMGLQCIGE 112 (229)
Q Consensus 64 l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlGI-------------C~G~Qlla~ 112 (229)
|++.++|++++-||.++......+.+.+.+.+-.++|.|| |+|++-...
T Consensus 172 L~~~~Id~LivIGGDGS~~gA~~L~e~~~~~g~~i~VIGIPKTIDNDI~~tD~T~GFdTAv~ 233 (484)
T PLN02564 172 IQDRGINQVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVE 233 (484)
T ss_pred HHHhCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEEecccccCCCcCcccCCCHHHHHH
Confidence 5555789999999988755444444444444333446665 999998765
No 319
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=53.22 E-value=62 Score=26.13 Aligned_cols=40 Identities=18% Similarity=0.334 Sum_probs=25.4
Q ss_pred HHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCCC
Q 027062 39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGP 78 (229)
Q Consensus 39 ~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG~ 78 (229)
.+.+.+++.|+.+.+........ +.+...++||+|+.++.
T Consensus 20 gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~ 65 (273)
T cd01541 20 GIESVLSEKGYSLLLASTNNDPERERKCLENMLSQGIDGLIIEPTK 65 (273)
T ss_pred HHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeccc
Confidence 45667778899998765432111 12334479999997754
No 320
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=53.06 E-value=22 Score=30.81 Aligned_cols=39 Identities=23% Similarity=0.528 Sum_probs=27.7
Q ss_pred HhccCCCEEEECCCCCCCCCcchHHHHHHH-hCCCCcEEEEehhHHH
Q 027062 64 LKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQC 109 (229)
Q Consensus 64 l~~~~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PvlGIC~G~Ql 109 (229)
+.+...|-|++.||.|+. +.+.+ .+.++|+|||-.|--+
T Consensus 96 ~~~~gVdlIvfaGGDGTa-------rDVa~av~~~vPvLGipaGvk~ 135 (355)
T COG3199 96 MVERGVDLIVFAGGDGTA-------RDVAEAVGADVPVLGIPAGVKN 135 (355)
T ss_pred HHhcCceEEEEeCCCccH-------HHHHhhccCCCceEeeccccce
Confidence 344468999999998853 44443 3778999999887543
No 321
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=53.06 E-value=72 Score=27.85 Aligned_cols=51 Identities=10% Similarity=0.173 Sum_probs=29.8
Q ss_pred CceEEEEECCCchhHHHHHHHHHcC-CEEEEEeCCc-cCHHHHhccCCCEEEE
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELG-YHFEVYRNDE-LTVEELKRKNPRGVLI 74 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g-~~~~v~~~~~-~~~~~l~~~~~dgiii 74 (229)
++||+|||.-.-....+.+.|...+ ++++-...+. ...+.+...++|-|.+
T Consensus 1 ~irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~~~PDVi~l 53 (350)
T COG2201 1 KIRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKKLKPDVITL 53 (350)
T ss_pred CcEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCEEEE
Confidence 4789999962223455777777776 5665544331 1223444556776655
No 322
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=52.62 E-value=1.2e+02 Score=25.22 Aligned_cols=41 Identities=20% Similarity=0.184 Sum_probs=25.9
Q ss_pred HHHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCCC
Q 027062 38 YNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGP 78 (229)
Q Consensus 38 ~~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG~ 78 (229)
..+.+.+++.|+.+.+...+.... +.+...++||+|+.+..
T Consensus 76 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~ 122 (327)
T PRK10423 76 RGVERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTE 122 (327)
T ss_pred HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 345677778899988765432111 12334479999998643
No 323
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=52.38 E-value=57 Score=26.39 Aligned_cols=61 Identities=16% Similarity=0.231 Sum_probs=32.5
Q ss_pred HHHHHHHHcCCEEEEEeCCc--cCH------HHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEEE
Q 027062 39 NLCQYMGELGYHFEVYRNDE--LTV------EELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 103 (229)
Q Consensus 39 ~~~~~l~~~g~~~~v~~~~~--~~~------~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlGI 103 (229)
.+.+++++.|+++.+...+. .+. +.+...++||+|+.+.... .....++.+.+ .++|++.+
T Consensus 20 gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~--~~~~~~~~~~~--~~iPvV~~ 88 (275)
T cd06320 20 GYENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPISDV--NLVPAVERAKK--KGIPVVNV 88 (275)
T ss_pred HHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECCCChH--HhHHHHHHHHH--CCCeEEEE
Confidence 35677778899998764321 111 1122347899998754221 11122333333 45777655
No 324
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=52.28 E-value=42 Score=25.93 Aligned_cols=54 Identities=13% Similarity=0.161 Sum_probs=34.3
Q ss_pred CCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHH-HhccCCCEEEECCC
Q 027062 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEE-LKRKNPRGVLISPG 77 (229)
Q Consensus 22 ~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~-l~~~~~dgiii~GG 77 (229)
-...+|+||..+......+.+.|.+.|+++.+.........+ +. +.|.||..=|
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~~~l~--~aDiVIsat~ 96 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLKEHTK--QADIVIVAVG 96 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHHHHHh--hCCEEEEcCC
Confidence 356789999973223455889999999988777654212222 22 4577776443
No 325
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=52.03 E-value=40 Score=26.49 Aligned_cols=79 Identities=11% Similarity=0.204 Sum_probs=45.2
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCc-chHHHHHHHhCCCCcEEE
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFG 102 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~-~~~~~~i~~~~~~~PvlG 102 (229)
..+|+++|....+...+.+.|+..|..+............+....+|.+++--. .+... ...+..++. ....|++-
T Consensus 10 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvl~d~~--~~~~~g~~~~~~l~~-~~~~pii~ 86 (240)
T PRK10710 10 TPRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQTPPDLILLDLM--LPGTDGLTLCREIRR-FSDIPIVM 86 (240)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEeCC--CCCCCHHHHHHHHHh-cCCCCEEE
Confidence 348999997666777788889888888754432211122233336788877322 11112 233444443 24578877
Q ss_pred Eeh
Q 027062 103 VCM 105 (229)
Q Consensus 103 IC~ 105 (229)
++-
T Consensus 87 l~~ 89 (240)
T PRK10710 87 VTA 89 (240)
T ss_pred EEc
Confidence 753
No 326
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=51.95 E-value=69 Score=30.85 Aligned_cols=75 Identities=17% Similarity=0.124 Sum_probs=45.9
Q ss_pred ceEEEEECCCc-h-----hHHHHHHHHHcCCEEEEEeCCccCHHHHh-ccCCCEEEECCCCCCCCCcchHHHHHHHhCCC
Q 027062 25 NPIIVIDNYDS-F-----TYNLCQYMGELGYHFEVYRNDELTVEELK-RKNPRGVLISPGPGAPQDSGISLQTVLELGPT 97 (229)
Q Consensus 25 ~~ilvid~~~~-~-----~~~~~~~l~~~g~~~~v~~~~~~~~~~l~-~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~ 97 (229)
|.|+||+..-+ . .+.+.+.|++.|+++...........-+. ..+++++|+.= .+. ...++..+++...+
T Consensus 1 ~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~ 76 (713)
T PRK15399 1 MNIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEHNPRICGVIFDW--DEY--SLDLCSDINQLNEY 76 (713)
T ss_pred CcEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhcccceeEEEEec--ccc--hHHHHHHHHHhCCC
Confidence 46777765322 1 35688889999999987765321111111 22578899872 111 23366777777778
Q ss_pred CcEEEE
Q 027062 98 VPLFGV 103 (229)
Q Consensus 98 ~PvlGI 103 (229)
+||+=.
T Consensus 77 ~Pv~~~ 82 (713)
T PRK15399 77 LPLYAF 82 (713)
T ss_pred CCEEEE
Confidence 998874
No 327
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=51.86 E-value=56 Score=23.46 Aligned_cols=54 Identities=20% Similarity=0.300 Sum_probs=29.1
Q ss_pred CCCceEEEEECCCc-----hhHHHHHHHHHcCCEEEEEeCC-ccCHHHHhc--------cCCCEEEEC
Q 027062 22 NNKNPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRND-ELTVEELKR--------KNPRGVLIS 75 (229)
Q Consensus 22 ~~~~~ilvid~~~~-----~~~~~~~~l~~~g~~~~v~~~~-~~~~~~l~~--------~~~dgiii~ 75 (229)
+...++++|..++. |.....+..++.|+.+..+... +.+.+++.+ .++|||++-
T Consensus 27 ~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~D~~V~GIlvq 94 (117)
T PF00763_consen 27 GITPKLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNEDPSVHGILVQ 94 (117)
T ss_dssp T---EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH-TT-SEEEEE
T ss_pred CCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhCCCCCCEEEEc
Confidence 44566666654322 4455667788899999887652 234444322 168999883
No 328
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=51.61 E-value=97 Score=26.91 Aligned_cols=76 Identities=16% Similarity=0.207 Sum_probs=46.8
Q ss_pred CchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHh--CCCCcEEEEehhHHHHH
Q 027062 34 DSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL--GPTVPLFGVCMGLQCIG 111 (229)
Q Consensus 34 ~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~--~~~~PvlGIC~G~Qlla 111 (229)
+.|.+.+.+++.+.|..+++.++.....+ . +-.-.+...|-. .|...+++.+++. .+.+-..|+-+|.-+|+
T Consensus 90 s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~-~---n~~p~~yh~G~t--~D~~~~l~~l~~~~~~r~~~avG~SLGgnmLa 163 (345)
T COG0429 90 SPYARGLMRALSRRGWLVVVFHFRGCSGE-A---NTSPRLYHSGET--EDIRFFLDWLKARFPPRPLYAVGFSLGGNMLA 163 (345)
T ss_pred CHHHHHHHHHHHhcCCeEEEEecccccCC-c---ccCcceecccch--hHHHHHHHHHHHhCCCCceEEEEecccHHHHH
Confidence 44677888999999999999886532211 1 101233444322 2223345556554 35566789999998888
Q ss_pred HHhC
Q 027062 112 EAFG 115 (229)
Q Consensus 112 ~alG 115 (229)
..+|
T Consensus 164 ~ylg 167 (345)
T COG0429 164 NYLG 167 (345)
T ss_pred HHHH
Confidence 8766
No 329
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=51.33 E-value=1.1e+02 Score=27.34 Aligned_cols=55 Identities=11% Similarity=0.075 Sum_probs=34.8
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhc-------------cCCCEEEECCCCC
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKR-------------KNPRGVLISPGPG 79 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~-------------~~~dgiii~GG~~ 79 (229)
.++|+||..+.+-. +.+++|.+.|+++...........++.. .++|-||.++|-.
T Consensus 9 ~~~i~viG~G~~G~-~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~ 76 (460)
T PRK01390 9 GKTVAVFGLGGSGL-ATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVP 76 (460)
T ss_pred CCEEEEEeecHhHH-HHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCC
Confidence 35799999865543 3588999999998876532111111110 1478888888743
No 330
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=51.28 E-value=82 Score=30.07 Aligned_cols=44 Identities=16% Similarity=-0.062 Sum_probs=27.4
Q ss_pred hHHHHHHHHHcCCEEEEEeCCccCHHH----Hhc---cCCCEEEECCCCCC
Q 027062 37 TYNLCQYMGELGYHFEVYRNDELTVEE----LKR---KNPRGVLISPGPGA 80 (229)
Q Consensus 37 ~~~~~~~l~~~g~~~~v~~~~~~~~~~----l~~---~~~dgiii~GG~~~ 80 (229)
...+..++++.|+++..+..-..+.+. +.. .++|.||++||.+.
T Consensus 211 ~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DlvItTGGts~ 261 (659)
T PLN02699 211 RAMLLAAAIQQQCKVVDLGIARDDEEELERILDEAISSGVDILLTSGGVSM 261 (659)
T ss_pred HHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhcCCCCEEEECCCCCC
Confidence 346888899999988754321112222 222 25899999998553
No 331
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=51.16 E-value=73 Score=25.44 Aligned_cols=40 Identities=18% Similarity=0.188 Sum_probs=25.6
Q ss_pred HHHHHHHHHcCCEEEEEeCCccC-H------HHHhccCCCEEEECCC
Q 027062 38 YNLCQYMGELGYHFEVYRNDELT-V------EELKRKNPRGVLISPG 77 (229)
Q Consensus 38 ~~~~~~l~~~g~~~~v~~~~~~~-~------~~l~~~~~dgiii~GG 77 (229)
..+.+.+++.|+.+.+...+..+ . +.+...++||+|+.+.
T Consensus 19 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 65 (264)
T cd01574 19 AAIESAAREAGYAVTLSMLAEADEEALRAAVRRLLAQRVDGVIVNAP 65 (264)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCchHHHHHHHHHHHhcCCCEEEEeCC
Confidence 44667778889999887653222 1 1233347999999764
No 332
>PRK13059 putative lipid kinase; Reviewed
Probab=50.90 E-value=39 Score=28.46 Aligned_cols=44 Identities=20% Similarity=0.252 Sum_probs=27.5
Q ss_pred HHHHHHHHcCCEEEEEeCCcc-CHHH---HhccCCCEEEECCCCCCCC
Q 027062 39 NLCQYMGELGYHFEVYRNDEL-TVEE---LKRKNPRGVLISPGPGAPQ 82 (229)
Q Consensus 39 ~~~~~l~~~g~~~~v~~~~~~-~~~~---l~~~~~dgiii~GG~~~~~ 82 (229)
.+.+.+++.|.++.++..... ..+. ....++|.||+.||-|+.+
T Consensus 23 ~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGTv~ 70 (295)
T PRK13059 23 KVIRIHQEKGYLVVPYRISLEYDLKNAFKDIDESYKYILIAGGDGTVD 70 (295)
T ss_pred HHHHHHHHCCcEEEEEEccCcchHHHHHHHhhcCCCEEEEECCccHHH
Confidence 366678889998876553211 1111 1123679999999988643
No 333
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=50.59 E-value=93 Score=22.91 Aligned_cols=40 Identities=20% Similarity=0.130 Sum_probs=27.8
Q ss_pred HHHHHHHHHcCCEEEEEeCCccCHHHH----hccCCCEEEECCCC
Q 027062 38 YNLCQYMGELGYHFEVYRNDELTVEEL----KRKNPRGVLISPGP 78 (229)
Q Consensus 38 ~~~~~~l~~~g~~~~v~~~~~~~~~~l----~~~~~dgiii~GG~ 78 (229)
.-+..+|+..|+++.....+ .+.+++ .+.+.|.|.|++-.
T Consensus 20 ~iv~~~l~~~GfeVi~lg~~-~s~e~~v~aa~e~~adii~iSsl~ 63 (132)
T TIGR00640 20 KVIATAYADLGFDVDVGPLF-QTPEEIARQAVEADVHVVGVSSLA 63 (132)
T ss_pred HHHHHHHHhCCcEEEECCCC-CCHHHHHHHHHHcCCCEEEEcCch
Confidence 34678889999999877765 333332 33478999998743
No 334
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=50.59 E-value=17 Score=29.28 Aligned_cols=90 Identities=16% Similarity=0.157 Sum_probs=54.3
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCcc---C----HHH-HhccCCCEEEECCCCCCCCCcchHHHHHH----
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL---T----VEE-LKRKNPRGVLISPGPGAPQDSGISLQTVL---- 92 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~---~----~~~-l~~~~~dgiii~GG~~~~~~~~~~~~~i~---- 92 (229)
|+|++... ......+.+.|++.|+++..++..+. + ... ....++|.||++...+ ...+.+.+.
T Consensus 2 ~~ilitr~-~~~~~~l~~~l~~~G~~v~~~p~~~~~~~~~~~~~~~~~~~~~~d~iiftS~~a----v~~~~~~~~~~~~ 76 (249)
T PRK05928 2 MKILVTRP-SPKAEELVELLRELGFVALHFPLIEIEPGRQLPQLAAQLAALGADWVIFTSKNA----VEFLLSALKKKKL 76 (249)
T ss_pred CEEEEeCC-HHHHHHHHHHHHHcCCCEEEeccEEEecCCCcChHHHHhhCCCCCEEEEECHHH----HHHHHHHHHhcCc
Confidence 67777764 34556788999999999987653221 1 011 1222689999986432 122222222
Q ss_pred HhCCCCcEEEEehhHHHHHHHhCCeee
Q 027062 93 ELGPTVPLFGVCMGLQCIGEAFGGKIV 119 (229)
Q Consensus 93 ~~~~~~PvlGIC~G~Qlla~alGg~v~ 119 (229)
..-.+.+++.|.-.-.-..+.+|.++.
T Consensus 77 ~~~~~~~~~avG~~Ta~~l~~~G~~~~ 103 (249)
T PRK05928 77 KWPKNKKYAAIGEKTALALKKLGGKVV 103 (249)
T ss_pred CCCCCCEEEEECHHHHHHHHHcCCCcc
Confidence 122457788777777777777887654
No 335
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=50.30 E-value=55 Score=26.39 Aligned_cols=39 Identities=23% Similarity=0.353 Sum_probs=21.8
Q ss_pred HHHHHHHHc---CC--EEEEEeCCccC------HHHHhccCCCEEEECCC
Q 027062 39 NLCQYMGEL---GY--HFEVYRNDELT------VEELKRKNPRGVLISPG 77 (229)
Q Consensus 39 ~~~~~l~~~---g~--~~~v~~~~~~~------~~~l~~~~~dgiii~GG 77 (229)
.+.+.+++. |. ++.+...+... .+.+...++||||+.+.
T Consensus 20 ~i~~~~~~~~~~g~~~~l~i~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~ 69 (272)
T cd06300 20 EFKAQAKELKKAGLISEFIVTSADGDVAQQIADIRNLIAQGVDAIIINPA 69 (272)
T ss_pred HHHHHHHhhhccCCeeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 455667778 87 44554432111 11223348999999764
No 336
>PRK09267 flavodoxin FldA; Validated
Probab=49.86 E-value=1.1e+02 Score=23.11 Aligned_cols=50 Identities=12% Similarity=0.129 Sum_probs=27.5
Q ss_pred ceEEEE-ECCCchhHHHHHHHHH-cC-CEEEEEeCCccCHHHHhccCCCEEEECC
Q 027062 25 NPIIVI-DNYDSFTYNLCQYMGE-LG-YHFEVYRNDELTVEELKRKNPRGVLISP 76 (229)
Q Consensus 25 ~~ilvi-d~~~~~~~~~~~~l~~-~g-~~~~v~~~~~~~~~~l~~~~~dgiii~G 76 (229)
|+|+|+ ....+.+..+++.+.+ ++ ..+.++...+....++. ++|+|||..
T Consensus 2 mki~IiY~S~tGnT~~vA~~Ia~~l~~~~~~~~~~~~~~~~~l~--~~d~vi~g~ 54 (169)
T PRK09267 2 AKIGIFFGSDTGNTEDIAKMIQKKLGKDVADVVDIAKASKEDFE--AYDLLILGI 54 (169)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHhCCCceEEEEhhhCCHhhHh--hCCEEEEEe
Confidence 467666 3334566666666543 22 24556655434444555 568877743
No 337
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=49.83 E-value=40 Score=26.19 Aligned_cols=43 Identities=21% Similarity=0.293 Sum_probs=26.5
Q ss_pred HHHHHHHHHcCCEEE---EEeCCccCH-HHHhc---cCCCEEEECCCCCC
Q 027062 38 YNLCQYMGELGYHFE---VYRNDELTV-EELKR---KNPRGVLISPGPGA 80 (229)
Q Consensus 38 ~~~~~~l~~~g~~~~---v~~~~~~~~-~~l~~---~~~dgiii~GG~~~ 80 (229)
..+.++|+++|.++. +++.+.... ..+.+ ..+|.|+.+||.|-
T Consensus 30 ~~l~~~L~~ag~~~~~~~iV~D~~~~I~~~l~~~~~~~~DvvlttGGTG~ 79 (169)
T COG0521 30 PLLVELLEEAGHNVAAYTIVPDDKEQIRATLIALIDEDVDVVLTTGGTGI 79 (169)
T ss_pred hHHHHHHHHcCCccceEEEeCCCHHHHHHHHHHHhcCCCCEEEEcCCccC
Confidence 468899999998773 334221111 11221 12899999999874
No 338
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=49.77 E-value=1.3e+02 Score=26.33 Aligned_cols=64 Identities=22% Similarity=0.409 Sum_probs=37.4
Q ss_pred ceEEEEECCCc-----hhHHHHHHHHHcCCEEEEEeCC--ccCHHH-------HhccCCCEEEECCCCCCCCCcchHHH
Q 027062 25 NPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRND--ELTVEE-------LKRKNPRGVLISPGPGAPQDSGISLQ 89 (229)
Q Consensus 25 ~~ilvid~~~~-----~~~~~~~~l~~~g~~~~v~~~~--~~~~~~-------l~~~~~dgiii~GG~~~~~~~~~~~~ 89 (229)
.|++||--..+ +...+.+.|++.|+++.++..- +.+.+. +.+.++|.||=.|| |++-|..+.+.
T Consensus 24 ~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GSviD~AK~ia 101 (375)
T cd08179 24 KKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREFEPDWIIALGG-GSPIDAAKAMW 101 (375)
T ss_pred CeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHHHHHHHH
Confidence 56777743222 2356777888889988776421 122222 22347899998887 45555555443
No 339
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=49.21 E-value=68 Score=26.00 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=24.7
Q ss_pred HHHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECC
Q 027062 38 YNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISP 76 (229)
Q Consensus 38 ~~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~G 76 (229)
..+.+++++.|+++.+........ +.+...++||||+.+
T Consensus 19 ~~i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~ 63 (282)
T cd06318 19 EAAKAHAKALGYELISTDAQGDLTKQIADVEDLLTRGVNVLIINP 63 (282)
T ss_pred HHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 346677888899998776432111 122233789999975
No 340
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=49.20 E-value=50 Score=28.15 Aligned_cols=82 Identities=10% Similarity=0.088 Sum_probs=47.3
Q ss_pred ccCCCceEEEEECCCchhH--HHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCC-------cchHHHH
Q 027062 20 SKNNKNPIIVIDNYDSFTY--NLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD-------SGISLQT 90 (229)
Q Consensus 20 ~~~~~~~ilvid~~~~~~~--~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~-------~~~~~~~ 90 (229)
.++++-+|.|.+......+ .+++.|.+.|+++.++... .-..-+...++|.+++ |. ..+.. .+-+.-.
T Consensus 148 ~~g~~~~V~v~EsrP~~~G~~~~a~~L~~~gI~vtlI~Ds-a~~~~m~~~~vd~Vlv-GA-d~v~~nG~v~nk~GT~~lA 224 (303)
T TIGR00524 148 EDGKRIRVIACETRPRNQGSRLTAWELMQDGIDVTLITDS-MAAYFMQKGEIDAVIV-GA-DRIARNGDVANKIGTYQLA 224 (303)
T ss_pred HcCCceEEEECCCCCccchHHHHHHHHHHCCCCEEEEChh-HHHHHccccCCCEEEE-cc-cEEecCCCEeEhhhHHHHH
Confidence 4455667777776655544 4688899999999988632 1111222124677766 32 22222 2333334
Q ss_pred HHHhCCCCcEEEEe
Q 027062 91 VLELGPTVPLFGVC 104 (229)
Q Consensus 91 i~~~~~~~PvlGIC 104 (229)
+.+...++|++-.|
T Consensus 225 ~~Ak~~~vPv~V~a 238 (303)
T TIGR00524 225 VLAKEFRIPFFVAA 238 (303)
T ss_pred HHHHHhCCCEEEec
Confidence 44444579999877
No 341
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=48.83 E-value=84 Score=24.19 Aligned_cols=83 Identities=11% Similarity=0.084 Sum_probs=48.6
Q ss_pred cCCCceEEEEECCCc---hhHHHHHHHHHcCCEEEEEeCC------------ccCH------------HHHhc-cCCCEE
Q 027062 21 KNNKNPIIVIDNYDS---FTYNLCQYMGELGYHFEVYRND------------ELTV------------EELKR-KNPRGV 72 (229)
Q Consensus 21 ~~~~~~ilvid~~~~---~~~~~~~~l~~~g~~~~v~~~~------------~~~~------------~~l~~-~~~dgi 72 (229)
...++.++++..+-. ....+.++.+..|+.+...... .... +-++. .++|-|
T Consensus 25 k~AKRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~~~~~~~~kgv~~~~~~lg~~g~~~~~p~~e~~~g~g~~Dlv 104 (162)
T TIGR00315 25 KRAKRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATADTYRALIEAGIESEEMNLHEITQFLADPSWEGFDGEGNYDLV 104 (162)
T ss_pred HcCCCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCccccccccCCeecCCCCHHHHHHhccCchhhhccCCCCcCEE
Confidence 455677888876432 3455777777788877654421 0111 01110 257889
Q ss_pred EECCCCCCCCCcchHHHHHHHhCCCCcEEEEehh
Q 027062 73 LISPGPGAPQDSGISLQTVLELGPTVPLFGVCMG 106 (229)
Q Consensus 73 ii~GG~~~~~~~~~~~~~i~~~~~~~PvlGIC~G 106 (229)
|+.|... +-....+..++... ++.++-||..
T Consensus 105 lfvG~~~--y~~~~~ls~lk~f~-~~~~i~l~~~ 135 (162)
T TIGR00315 105 LFLGIIY--YYLSQMLSSLKHFS-HIVTIAIDKY 135 (162)
T ss_pred EEeCCcc--hHHHHHHHHHHhhc-CcEEEEecCC
Confidence 9988654 22334456666666 7899999933
No 342
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=48.75 E-value=79 Score=31.11 Aligned_cols=80 Identities=11% Similarity=0.201 Sum_probs=49.4
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCC---Cc
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPT---VP 99 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~-~~~~~i~~~~~~---~P 99 (229)
..+|+|+|........+.+.|+..|+++..........+.+....||.|++-- ..+...+ ...+.+++.... .|
T Consensus 702 ~~~iLvvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvl~D~--~mp~~~g~~~~~~ir~~~~~~~~~p 779 (968)
T TIGR02956 702 PQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFHQHAFDLALLDI--NLPDGDGVTLLQQLRAIYGAKNEVK 779 (968)
T ss_pred ccceEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHCCCCCEEEECC--CCCCCCHHHHHHHHHhCccccCCCe
Confidence 35799999755566778888999999887665332223344444688887632 2233333 345666654322 89
Q ss_pred EEEEeh
Q 027062 100 LFGVCM 105 (229)
Q Consensus 100 vlGIC~ 105 (229)
++.+.-
T Consensus 780 ii~lta 785 (968)
T TIGR02956 780 FIAFSA 785 (968)
T ss_pred EEEEEC
Confidence 998853
No 343
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=48.66 E-value=1e+02 Score=23.54 Aligned_cols=76 Identities=20% Similarity=0.216 Sum_probs=42.7
Q ss_pred EEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCC-CcchHHHHHHHhCCCCcEEEEe
Q 027062 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELGPTVPLFGVC 104 (229)
Q Consensus 27 ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~-~~~~~~~~i~~~~~~~PvlGIC 104 (229)
|+++|........+...++..|..+............+....+|.+++--. .+. +.-.....++......|++-+.
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvl~d~~--~~~~~g~~~~~~l~~~~~~~~iivls 77 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALKDDYDLIILDVM--LPGMDGWQILQTLRRSGKQTPVLFLT 77 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHccCCCCcEEEEE
Confidence 467887555667788888888887654432211122333446888876322 111 1223445555545567877664
No 344
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=48.56 E-value=98 Score=26.04 Aligned_cols=80 Identities=19% Similarity=0.233 Sum_probs=47.5
Q ss_pred ccCCCceEEEEECCCchhH-HHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCC-------CcchHHHHH
Q 027062 20 SKNNKNPIIVIDNYDSFTY-NLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-------DSGISLQTV 91 (229)
Q Consensus 20 ~~~~~~~ilvid~~~~~~~-~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~-------~~~~~~~~i 91 (229)
.++++-+|.+.+....+.+ .+++.|.+.|+++.++..... ..-+. ++|.+|+ | ...+. ..+-+.-.+
T Consensus 131 ~~gk~~~V~v~EsrP~~qG~~la~eL~~~GI~vtlI~Dsa~-~~~m~--~vd~Viv-G-AD~I~~nG~v~NKiGT~~lA~ 205 (275)
T PRK08335 131 RKGKRFKVILTESAPDYEGLALANELEFLGIEFEVITDAQL-GLFAK--EATLALV-G-ADNVTRDGYVVNKAGTYLLAL 205 (275)
T ss_pred HcCCceEEEEecCCCchhHHHHHHHHHHCCCCEEEEeccHH-HHHHH--hCCEEEE-C-ccEEecCCCEeehhhHHHHHH
Confidence 3455567777776655553 578889999999998874311 11122 4677765 3 22222 223333444
Q ss_pred HHhCCCCcEEEEe
Q 027062 92 LELGPTVPLFGVC 104 (229)
Q Consensus 92 ~~~~~~~PvlGIC 104 (229)
.+...++|++-.|
T Consensus 206 ~Ak~~~vPfyV~a 218 (275)
T PRK08335 206 ACHDNGVPFYVAA 218 (275)
T ss_pred HHHHcCCCEEEEC
Confidence 4445679999876
No 345
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=48.55 E-value=1.4e+02 Score=24.81 Aligned_cols=54 Identities=17% Similarity=0.185 Sum_probs=30.8
Q ss_pred CceEEEEEC--CCchhH----HHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCC
Q 027062 24 KNPIIVIDN--YDSFTY----NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (229)
Q Consensus 24 ~~~ilvid~--~~~~~~----~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG 77 (229)
+..|.|+-. .+.|.. .+.+.+++.|+.+.+...++... +.+...++||||+.+.
T Consensus 61 ~~~Igvv~~~~~~~~~~~l~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 126 (328)
T PRK11303 61 TRSIGLIIPDLENTSYARIAKYLERQARQRGYQLLIACSDDQPDNEMRCAEHLLQRQVDALIVSTS 126 (328)
T ss_pred CceEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 345666532 223333 35566777899998875432111 1123347999999764
No 346
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=48.28 E-value=84 Score=25.65 Aligned_cols=39 Identities=13% Similarity=0.073 Sum_probs=27.6
Q ss_pred HHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCC
Q 027062 38 YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77 (229)
Q Consensus 38 ~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG 77 (229)
..+.+.+++.|+.+.+...++ ..+.+...++||+|+.+.
T Consensus 27 ~~i~~~~~~~gy~~~~~~~~~-~~~~l~~~~vdgiIi~~~ 65 (269)
T cd06287 27 AAAAESALERGLALCLVPPHE-ADSPLDALDIDGAILVEP 65 (269)
T ss_pred HHHHHHHHHCCCEEEEEeCCC-chhhhhccCcCeEEEecC
Confidence 456778888999998886642 223455558999999753
No 347
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=48.19 E-value=77 Score=27.21 Aligned_cols=58 Identities=16% Similarity=0.148 Sum_probs=33.0
Q ss_pred cccCCCceEEEEECC--Cchh----HHHHHHHHHcCCEEEEEeCCccCH-------HHHhccCCCEEEECC
Q 027062 19 KSKNNKNPIIVIDNY--DSFT----YNLCQYMGELGYHFEVYRNDELTV-------EELKRKNPRGVLISP 76 (229)
Q Consensus 19 ~~~~~~~~ilvid~~--~~~~----~~~~~~l~~~g~~~~v~~~~~~~~-------~~l~~~~~dgiii~G 76 (229)
++.....+|.+|-.. ..|. .-+.++.++.|+++.+....+.+. +.+...++|||++++
T Consensus 18 ~~~~~~~~i~~v~k~~~~pf~~~~~~Gi~~aa~~~G~~v~~~~~~~~d~~~q~~~i~~li~~~vdgIiv~~ 88 (336)
T PRK15408 18 MTVQAAERIAFIPKLVGVGFFTSGGNGAKEAGKELGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSA 88 (336)
T ss_pred ccccCCcEEEEEECCCCCHHHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 344456677777432 2233 235677778899998633221111 223334799999974
No 348
>PRK13337 putative lipid kinase; Reviewed
Probab=48.18 E-value=41 Score=28.38 Aligned_cols=57 Identities=16% Similarity=0.085 Sum_probs=33.5
Q ss_pred ceEEEEECCCc-h---h---HHHHHHHHHcCCEEEEEeCCc-cCHHH----HhccCCCEEEECCCCCCC
Q 027062 25 NPIIVIDNYDS-F---T---YNLCQYMGELGYHFEVYRNDE-LTVEE----LKRKNPRGVLISPGPGAP 81 (229)
Q Consensus 25 ~~ilvid~~~~-~---~---~~~~~~l~~~g~~~~v~~~~~-~~~~~----l~~~~~dgiii~GG~~~~ 81 (229)
+|+++|-|..+ . . ..+.+.+++.|.++.++.... ....+ ....++|.||+.||-|+.
T Consensus 2 ~r~~~I~Np~aG~~~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl 70 (304)
T PRK13337 2 KRARIIYNPTSGRELFKKNLPDVLQKLEQAGYETSAHATTGPGDATLAAERAVERKFDLVIAAGGDGTL 70 (304)
T ss_pred ceEEEEECCcccchhHHHHHHHHHHHHHHcCCEEEEEEecCCCCHHHHHHHHHhcCCCEEEEEcCCCHH
Confidence 46666655322 1 1 235667888999877654321 12222 222357999999998864
No 349
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=47.96 E-value=77 Score=22.41 Aligned_cols=77 Identities=12% Similarity=0.037 Sum_probs=37.6
Q ss_pred eEEEEECCCchh--HHHHHHHHHcC-CEEEEEeCCccCHHHHhcc-CCCEEEECCCCCCCCCcchHHHHHHH-hCCCCcE
Q 027062 26 PIIVIDNYDSFT--YNLCQYMGELG-YHFEVYRNDELTVEELKRK-NPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPL 100 (229)
Q Consensus 26 ~ilvid~~~~~~--~~~~~~l~~~g-~~~~v~~~~~~~~~~l~~~-~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~Pv 100 (229)
+|.++..+.++. ..+...+...+ ..+......+... ..... +-|.+|+..-.|... ...+.+.. .+++.|+
T Consensus 1 ~I~i~G~G~S~~~a~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~I~iS~sG~t~---e~~~~~~~a~~~g~~v 76 (126)
T cd05008 1 RILIVGCGTSYHAALVAKYLLERLAGIPVEVEAASEFRY-RRPLLDEDTLVIAISQSGETA---DTLAALRLAKEKGAKT 76 (126)
T ss_pred CEEEEEccHHHHHHHHHHHHHHHhcCCceEEEehhHhhh-cCCCCCCCcEEEEEeCCcCCH---HHHHHHHHHHHcCCeE
Confidence 477888776643 34566677765 6766655221110 00001 224444443333222 23333332 2356899
Q ss_pred EEEehh
Q 027062 101 FGVCMG 106 (229)
Q Consensus 101 lGIC~G 106 (229)
++|+-.
T Consensus 77 i~iT~~ 82 (126)
T cd05008 77 VAITNV 82 (126)
T ss_pred EEEECC
Confidence 999853
No 350
>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI. Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised.
Probab=47.51 E-value=91 Score=22.83 Aligned_cols=67 Identities=21% Similarity=0.175 Sum_probs=34.8
Q ss_pred CCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEEEe
Q 027062 33 YDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (229)
Q Consensus 33 ~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlGIC 104 (229)
|.|.+++-.+.++++|.++..++.+.....++ +.+.++|+-..+.-.-.....+.+....+ -+.||+
T Consensus 3 Y~S~TGNte~fv~~lg~~~~~i~~~~~d~~~~---~~~~vliTyT~G~G~vP~~~~~Fle~~~n--~~~gV~ 69 (125)
T TIGR00333 3 FSSKTGNVQRFVEKLGFQHIRIPVDETDDIHV---DQEFVLITYTGGFGAVPKQTISFLNKKHN--LLRGVA 69 (125)
T ss_pred EEcccccHHHHHHHcCCCcEEeecCCcchhhc---CCCEEEEecCCCCCcCCHHHHHHHHhhhh--cEEEEE
Confidence 34666677777888898875555432222233 55888886543331112233344433333 455554
No 351
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=47.27 E-value=1.1e+02 Score=24.49 Aligned_cols=41 Identities=17% Similarity=0.276 Sum_probs=26.5
Q ss_pred HHHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCCC
Q 027062 38 YNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGP 78 (229)
Q Consensus 38 ~~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG~ 78 (229)
..+.+++++.|+.+.+........ +.+...++||||+.+..
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 65 (265)
T cd06299 19 TAIQDAASAAGYSTIIGNSDENPETENRYLDNLLSQRVDGIIVVPHE 65 (265)
T ss_pred HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 446677888899998876532211 12333478999998753
No 352
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=47.19 E-value=69 Score=26.58 Aligned_cols=40 Identities=18% Similarity=0.288 Sum_probs=26.1
Q ss_pred HHHHHHHHHcCCEEEEEeCCccCH-----HHHhccCCCEEEECCC
Q 027062 38 YNLCQYMGELGYHFEVYRNDELTV-----EELKRKNPRGVLISPG 77 (229)
Q Consensus 38 ~~~~~~l~~~g~~~~v~~~~~~~~-----~~l~~~~~dgiii~GG 77 (229)
..+.+.+++.|+.+.+...+.... +.+...++||+|+.+.
T Consensus 21 ~gIe~~a~~~Gy~l~l~~t~~~~~~e~~i~~l~~~~vDGiI~~s~ 65 (279)
T PF00532_consen 21 RGIEQEAREHGYQLLLCNTGDDEEKEEYIELLLQRRVDGIILASS 65 (279)
T ss_dssp HHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHTTSSEEEEESS
T ss_pred HHHHHHHHHcCCEEEEecCCCchHHHHHHHHHHhcCCCEEEEecc
Confidence 346677778899998876542221 1234458999999954
No 353
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=47.03 E-value=55 Score=27.82 Aligned_cols=45 Identities=18% Similarity=0.192 Sum_probs=30.5
Q ss_pred hHHHHHHHHHcCCEEEEEeCCcc-CHHH----HhccCCCEEEECCCCCCC
Q 027062 37 TYNLCQYMGELGYHFEVYRNDEL-TVEE----LKRKNPRGVLISPGPGAP 81 (229)
Q Consensus 37 ~~~~~~~l~~~g~~~~v~~~~~~-~~~~----l~~~~~dgiii~GG~~~~ 81 (229)
...+.+.|++.|.+..+...... ...+ +....+|.||..||-|.+
T Consensus 22 ~~~~~~~l~~~g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGDGTv 71 (301)
T COG1597 22 LREVEELLEEAGHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGDGTV 71 (301)
T ss_pred HHHHHHHHHhcCCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecCcchH
Confidence 34567778889999887765432 2222 222379999999998864
No 354
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=46.89 E-value=92 Score=25.57 Aligned_cols=38 Identities=11% Similarity=0.173 Sum_probs=22.6
Q ss_pred HHHHHHHHcCCEEEEEeCCccCHH-------HHhccCCCEEEECC
Q 027062 39 NLCQYMGELGYHFEVYRNDELTVE-------ELKRKNPRGVLISP 76 (229)
Q Consensus 39 ~~~~~l~~~g~~~~v~~~~~~~~~-------~l~~~~~dgiii~G 76 (229)
.+.+.+++.|+.+.++.......+ .+...++||||+.+
T Consensus 20 gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~dgiii~~ 64 (294)
T cd06316 20 GAKDEFAKLGIEVVATTDAQFDPAKQVADIETTISQKPDIIISIP 64 (294)
T ss_pred HHHHHHHHcCCEEEEecCCCCCHHHHHHHHHHHHHhCCCEEEEcC
Confidence 356777888999875422211211 12233799999975
No 355
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=46.71 E-value=39 Score=25.89 Aligned_cols=55 Identities=9% Similarity=0.117 Sum_probs=29.0
Q ss_pred CCceEEEEE--CCCchhHHH----HHHHHHcCC---EEEEEeC---CccCH--HHHhc-cCCCEEEECCC
Q 027062 23 NKNPIIVID--NYDSFTYNL----CQYMGELGY---HFEVYRN---DELTV--EELKR-KNPRGVLISPG 77 (229)
Q Consensus 23 ~~~~ilvid--~~~~~~~~~----~~~l~~~g~---~~~v~~~---~~~~~--~~l~~-~~~dgiii~GG 77 (229)
...||+||- +++..+..+ .+.|++.|+ .+.+++. .+.|. ..+.. .+||++|..|-
T Consensus 9 ~~~riaIV~srfn~~It~~Ll~gA~~~l~~~G~~~~~i~v~~VPGA~EiP~~a~~l~~~~~yDaiIaLG~ 78 (158)
T PRK12419 9 TPQRIAFIQARWHADIVDQARKGFVAEIAARGGAASQVDIFDVPGAFEIPLHAQTLAKTGRYAAIVAAAL 78 (158)
T ss_pred CCCEEEEEEecCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEEEE
Confidence 345888885 334444332 345667774 2444432 22222 22222 26999998885
No 356
>COG4242 CphB Cyanophycinase and related exopeptidases [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=46.66 E-value=1.1e+02 Score=25.42 Aligned_cols=94 Identities=13% Similarity=0.257 Sum_probs=56.0
Q ss_pred cccCCCceEEEEECCCchh----HHHHHHHHHcCCE-EEEE--eCC-ccCHHHHhc--cCCCEEEECCCCCCCC----Cc
Q 027062 19 KSKNNKNPIIVIDNYDSFT----YNLCQYMGELGYH-FEVY--RND-ELTVEELKR--KNPRGVLISPGPGAPQ----DS 84 (229)
Q Consensus 19 ~~~~~~~~ilvid~~~~~~----~~~~~~l~~~g~~-~~v~--~~~-~~~~~~l~~--~~~dgiii~GG~~~~~----~~ 84 (229)
+.-..+..|.|+...+..+ +++.+.++..|++ +.++ ++. +.+..+... .+++||+++||..... .+
T Consensus 47 r~g~~~A~i~I~paas~ep~~iG~~y~rife~~gv~~v~ildir~R~~a~~s~~~~~v~~a~gIfftGGDQ~ri~~~lkd 126 (293)
T COG4242 47 RAGGEKAYIVIIPAASREPRAIGGNYIRIFEMMGVEEVQILDIRNREDASSSDIVAKVENATGIFFTGGDQLRIIGSLKD 126 (293)
T ss_pred CCCCCceEEEEEecCccChhhhccchhhHHHHhccceeEEEeeecccccchHHHHHHHHhCceEEEecCcceeeeeeccC
Confidence 3334445677776654433 4566777777763 3333 221 122222211 2789999999976432 34
Q ss_pred chHHHHHHH-hCCCCcEEEEehhHHHHHH
Q 027062 85 GISLQTVLE-LGPTVPLFGVCMGLQCIGE 112 (229)
Q Consensus 85 ~~~~~~i~~-~~~~~PvlGIC~G~Qlla~ 112 (229)
.++.+.+++ +-+++-+-|+-.|.-+|..
T Consensus 127 Tpl~~~ir~r~r~G~avgGTSAGAavM~~ 155 (293)
T COG4242 127 TPLMAAIRQRVRRGIAVGGTSAGAAVMSD 155 (293)
T ss_pred CHHHHHHHHHHhcCceecccccchhhcCC
Confidence 456666664 4567889999999888765
No 357
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=46.62 E-value=98 Score=24.83 Aligned_cols=40 Identities=13% Similarity=0.175 Sum_probs=25.4
Q ss_pred HHHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCC
Q 027062 38 YNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (229)
Q Consensus 38 ~~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG 77 (229)
..+.+.+++.|+.+.+...+.... +.+...++||||+.+.
T Consensus 22 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 67 (268)
T cd06277 22 RAIEEEAKKYGYNLILKFVSDEDEEEFELPSFLEDGKVDGIILLGG 67 (268)
T ss_pred HHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEeCC
Confidence 345667778899988776542221 1133347999999763
No 358
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=46.59 E-value=76 Score=25.57 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=24.1
Q ss_pred HHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCC
Q 027062 39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (229)
Q Consensus 39 ~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG 77 (229)
.+.+.+++.|+++.++.....+. ..+...++||+|+.+.
T Consensus 20 ~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~ 64 (277)
T cd06319 20 GVKSKAKALGYDAVELSAENSAKKELENLRTAIDKGVSGIIISPT 64 (277)
T ss_pred HHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 35566777899998775432111 1223347999998653
No 359
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=46.54 E-value=1.8e+02 Score=26.23 Aligned_cols=30 Identities=20% Similarity=0.222 Sum_probs=20.9
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEe
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYR 55 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~ 55 (229)
..+|+|+..+-+ -...+++|.. |+++.+..
T Consensus 6 ~~~v~v~G~G~s-G~a~~~~L~~-g~~v~v~D 35 (454)
T PRK01368 6 KQKIGVFGLGKT-GISVYEELQN-KYDVIVYD 35 (454)
T ss_pred CCEEEEEeecHH-HHHHHHHHhC-CCEEEEEC
Confidence 457999997432 2456677874 99888776
No 360
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=46.31 E-value=1.7e+02 Score=24.70 Aligned_cols=101 Identities=17% Similarity=0.198 Sum_probs=62.8
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCc--cC--H-HHHhccCCCEEEECCCCCCCCC------------cc
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDE--LT--V-EELKRKNPRGVLISPGPGAPQD------------SG 85 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~--~~--~-~~l~~~~~dgiii~GG~~~~~~------------~~ 85 (229)
..-|||=||-...|...-.+.-+.+|+++.=+...+ .+ . +-++..++|.|||||-.+-... ..
T Consensus 104 ~PGkVLHlDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGHD~~~K~~~d~~dl~~YrnSk 183 (287)
T PF05582_consen 104 RPGKVLHLDGDEEYLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLLEEYRPDILVITGHDGYLKNKKDYSDLNNYRNSK 183 (287)
T ss_pred CCCeEEEecCCHHHHHHHHHHHHHcCCceEEEEechHHhhHHHHHHHHHcCCCEEEEeCchhhhcCCCChhhhhhhhccH
Confidence 345899999655577777788889999987555432 11 1 1234458999999996542211 11
Q ss_pred hHHHHH---HHhCCC----CcEEEEehhHHHHHHHhCCeeeecCC
Q 027062 86 ISLQTV---LELGPT----VPLFGVCMGLQCIGEAFGGKIVRSPL 123 (229)
Q Consensus 86 ~~~~~i---~~~~~~----~PvlGIC~G~Qlla~alGg~v~~~~~ 123 (229)
.+++.+ ++.+.+ +=+-|-|.-|=-.-...|++-...|.
T Consensus 184 yFVeaV~~aR~~ep~~D~LVIfAGACQS~fEall~AGANFASSP~ 228 (287)
T PF05582_consen 184 YFVEAVKEARKYEPNLDDLVIFAGACQSHFEALLEAGANFASSPK 228 (287)
T ss_pred HHHHHHHHHHhcCCCcccEEEEcchhHHHHHHHHHcCccccCCcc
Confidence 234433 333322 34678887776666667887777764
No 361
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=46.24 E-value=1.1e+02 Score=27.35 Aligned_cols=30 Identities=3% Similarity=0.040 Sum_probs=21.4
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEE
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVY 54 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~ 54 (229)
+|+||||.. +.....+...|++.|.++...
T Consensus 2 ~~kVLvlG~-G~re~al~~~l~~~g~~v~~~ 31 (435)
T PRK06395 2 TMKVMLVGS-GGREDAIARAIKRSGAILFSV 31 (435)
T ss_pred ceEEEEECC-cHHHHHHHHHHHhCCCeEEEE
Confidence 579999986 345667777788888755443
No 362
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=46.15 E-value=74 Score=25.59 Aligned_cols=39 Identities=8% Similarity=0.100 Sum_probs=24.6
Q ss_pred HHHHHHHH-cCCEEEEEeCCccCH------HHHhccCCCEEEECCC
Q 027062 39 NLCQYMGE-LGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (229)
Q Consensus 39 ~~~~~l~~-~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG 77 (229)
.+.+++++ .|+++.+...+.... +.+...++||+|+.+.
T Consensus 20 gi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 65 (272)
T cd06301 20 AMKEHAKVLGGVELQFEDAKNDVATQLSQVENFIAQGVDAIIVVPV 65 (272)
T ss_pred HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 46677777 899988875432111 1223347999999764
No 363
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=46.09 E-value=1.2e+02 Score=26.68 Aligned_cols=62 Identities=15% Similarity=0.101 Sum_probs=34.5
Q ss_pred ceEEEEECCCch-----hHHHHHHHHHcCCEEEEEeCC--ccCHHH-------HhccCCCEEEECCCCCCCCCcchH
Q 027062 25 NPIIVIDNYDSF-----TYNLCQYMGELGYHFEVYRND--ELTVEE-------LKRKNPRGVLISPGPGAPQDSGIS 87 (229)
Q Consensus 25 ~~ilvid~~~~~-----~~~~~~~l~~~g~~~~v~~~~--~~~~~~-------l~~~~~dgiii~GG~~~~~~~~~~ 87 (229)
.|++||--...+ ...+...|++.|+++.++..- +.+.+. +...++|+||=.||. ++.|..+.
T Consensus 29 ~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGG-S~iD~aK~ 104 (382)
T cd08187 29 KKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEKVDFILAVGGG-SVIDSAKA 104 (382)
T ss_pred CEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCCh-HHHHHHHH
Confidence 567777322222 345777888889888766421 111222 333478999977763 44444443
No 364
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=45.99 E-value=1.3e+02 Score=26.34 Aligned_cols=62 Identities=16% Similarity=0.311 Sum_probs=35.2
Q ss_pred ceEEEEECCCc----hhHHHHHHHHHcCCEEEEEeCCc--cCHHH-------HhccCCCEEEECCCCCCCCCcchH
Q 027062 25 NPIIVIDNYDS----FTYNLCQYMGELGYHFEVYRNDE--LTVEE-------LKRKNPRGVLISPGPGAPQDSGIS 87 (229)
Q Consensus 25 ~~ilvid~~~~----~~~~~~~~l~~~g~~~~v~~~~~--~~~~~-------l~~~~~dgiii~GG~~~~~~~~~~ 87 (229)
.|++||--... +...+...|++.|+++.++...+ .+.+. +.+.++|.||-.||. ++-|..+.
T Consensus 30 ~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiaiGGG-SviD~aKa 104 (379)
T TIGR02638 30 KKALVVTDKDLIKFGVADKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKASGADYLIAIGGG-SPIDTAKA 104 (379)
T ss_pred CEEEEEcCcchhhccchHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCh-HHHHHHHH
Confidence 57777743221 33457778888899888764211 12222 233478999977763 44444443
No 365
>PLN02778 3,5-epimerase/4-reductase
Probab=45.38 E-value=1.3e+02 Score=25.18 Aligned_cols=58 Identities=12% Similarity=0.133 Sum_probs=37.8
Q ss_pred cCCCceEEEEECCCchh-HHHHHHHHHcCCEEEEEeCCccCHH----HHhccCCCEEEECCCCC
Q 027062 21 KNNKNPIIVIDNYDSFT-YNLCQYMGELGYHFEVYRNDELTVE----ELKRKNPRGVLISPGPG 79 (229)
Q Consensus 21 ~~~~~~ilvid~~~~~~-~~~~~~l~~~g~~~~v~~~~~~~~~----~l~~~~~dgiii~GG~~ 79 (229)
+..+|+|+|... .+|. ..+++.|.+.|.++.....+....+ ++...++|.||=+.|..
T Consensus 6 ~~~~~kiLVtG~-tGfiG~~l~~~L~~~g~~V~~~~~~~~~~~~v~~~l~~~~~D~ViH~Aa~~ 68 (298)
T PLN02778 6 GSATLKFLIYGK-TGWIGGLLGKLCQEQGIDFHYGSGRLENRASLEADIDAVKPTHVFNAAGVT 68 (298)
T ss_pred CCCCCeEEEECC-CCHHHHHHHHHHHhCCCEEEEecCccCCHHHHHHHHHhcCCCEEEECCccc
Confidence 345678999985 5665 5688999999998865432212222 33344789998776654
No 366
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=45.24 E-value=1e+02 Score=24.66 Aligned_cols=60 Identities=15% Similarity=0.106 Sum_probs=33.3
Q ss_pred HHHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEEE
Q 027062 38 YNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 103 (229)
Q Consensus 38 ~~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlGI 103 (229)
..+.+.+++.|+.+.+...+..+. ..+...++||+|+.+... .....+.+. ..++|++.+
T Consensus 19 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~----~~~~~~~l~--~~~iPvv~~ 84 (268)
T cd06273 19 QAFQETLAAHGYTLLVASSGYDLDREYAQARKLLERGVDGLALIGLDH----SPALLDLLA--RRGVPYVAT 84 (268)
T ss_pred HHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEeCCCC----CHHHHHHHH--hCCCCEEEE
Confidence 346777888899998865432111 123333689999986432 122223322 245777654
No 367
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=45.10 E-value=24 Score=32.78 Aligned_cols=66 Identities=11% Similarity=0.104 Sum_probs=39.3
Q ss_pred HHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHh--CCCCcEEEEehhHHHHHH
Q 027062 38 YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL--GPTVPLFGVCMGLQCIGE 112 (229)
Q Consensus 38 ~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~--~~~~PvlGIC~G~Qlla~ 112 (229)
.+++++|-+.|++|-++.+.....++ ....+|-.| - | ....++.+++. ..++-++|.|.|--+++.
T Consensus 237 ~SlVr~lv~qG~~VflIsW~nP~~~~-r~~~ldDYv-~-~------i~~Ald~V~~~tG~~~vnl~GyC~GGtl~a~ 304 (560)
T TIGR01839 237 KSFVQYCLKNQLQVFIISWRNPDKAH-REWGLSTYV-D-A------LKEAVDAVRAITGSRDLNLLGACAGGLTCAA 304 (560)
T ss_pred chHHHHHHHcCCeEEEEeCCCCChhh-cCCCHHHHH-H-H------HHHHHHHHHHhcCCCCeeEEEECcchHHHHH
Confidence 68999999999999998875322221 111111111 0 0 01123444443 356789999999999886
No 368
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=45.10 E-value=86 Score=25.57 Aligned_cols=40 Identities=5% Similarity=0.038 Sum_probs=26.2
Q ss_pred HHHHHHHHHcCCEEEEEeCCc--cCHHHHhccCCCEEEECCC
Q 027062 38 YNLCQYMGELGYHFEVYRNDE--LTVEELKRKNPRGVLISPG 77 (229)
Q Consensus 38 ~~~~~~l~~~g~~~~v~~~~~--~~~~~l~~~~~dgiii~GG 77 (229)
..+.+.+++.|+++.+...+. ...+.+...++||+|+.+.
T Consensus 24 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~dgiii~~~ 65 (283)
T cd06279 24 AGVAEVLDAAGVNLLLLPASSEDSDSALVVSALVDGFIVYGV 65 (283)
T ss_pred HHHHHHHHHCCCEEEEecCccHHHHHHHHHhcCCCEEEEeCC
Confidence 346677788899998876542 1112333457999999864
No 369
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=44.80 E-value=1.5e+02 Score=24.94 Aligned_cols=55 Identities=13% Similarity=0.116 Sum_probs=31.3
Q ss_pred CCceEEEEECC--Cchh----HHHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCC
Q 027062 23 NKNPIIVIDNY--DSFT----YNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (229)
Q Consensus 23 ~~~~ilvid~~--~~~~----~~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG 77 (229)
++..|.+|-.. +.|. ..+.+.+++.|+++.+........ +.+...++||||+.++
T Consensus 58 ~~~~i~vi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 124 (341)
T PRK10703 58 HTKSIGLLATSSEAPYFAEIIEAVEKNCYQKGYTLILCNAWNNLEKQRAYLSMLAQKRVDGLLVMCS 124 (341)
T ss_pred CCCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 34466666432 2233 335566777899988776432111 1222337899999875
No 370
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=44.25 E-value=91 Score=25.08 Aligned_cols=39 Identities=21% Similarity=0.284 Sum_probs=24.1
Q ss_pred HHHHHHHHcCCEEEEEeCC-ccCHH-------HHhccCCCEEEECCC
Q 027062 39 NLCQYMGELGYHFEVYRND-ELTVE-------ELKRKNPRGVLISPG 77 (229)
Q Consensus 39 ~~~~~l~~~g~~~~v~~~~-~~~~~-------~l~~~~~dgiii~GG 77 (229)
.+.+++++.|+.+.+...+ ..+.+ .+...++||+|+.+.
T Consensus 20 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgvii~~~ 66 (273)
T cd06310 20 GAEAAAKELGVKVTFQGPASETDVAGQVNLLENAIARGPDAILLAPT 66 (273)
T ss_pred HHHHHHHHcCCEEEEecCccCCCHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 3556677889999887531 11111 123347999999764
No 371
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=43.98 E-value=1e+02 Score=26.20 Aligned_cols=80 Identities=11% Similarity=0.093 Sum_probs=47.5
Q ss_pred ccCCCceEEEEECCCchh-HHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCC-------cchHHHHH
Q 027062 20 SKNNKNPIIVIDNYDSFT-YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD-------SGISLQTV 91 (229)
Q Consensus 20 ~~~~~~~ilvid~~~~~~-~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~-------~~~~~~~i 91 (229)
.++++-+|.|.+....+. ..+++.|.+.|+++.++... .-..-+. ++|.+++ |. ..+.. .+-+.-.+
T Consensus 137 ~~~~~f~V~v~EsrP~~~G~~~a~~L~~~gI~vtlI~Ds-a~~~~m~--~vd~Viv-Ga-d~v~~nG~v~nkiGT~~lA~ 211 (301)
T TIGR00511 137 EQGKDIEVIATETRPRKQGHITAKELRDYGIPVTLIVDS-AVRYFMK--EVDHVVV-GA-DAITANGALINKIGTSQLAL 211 (301)
T ss_pred HcCCcEEEEEecCCCcchHHHHHHHHHHCCCCEEEEehh-HHHHHHH--hCCEEEE-Cc-cEEecCCCEEEHHhHHHHHH
Confidence 345567788887765554 45788899999999988743 1111232 4677665 32 22222 23333334
Q ss_pred HHhCCCCcEEEEe
Q 027062 92 LELGPTVPLFGVC 104 (229)
Q Consensus 92 ~~~~~~~PvlGIC 104 (229)
.+...++|++-.|
T Consensus 212 ~Ak~~~vPv~V~a 224 (301)
T TIGR00511 212 AAREARVPFMVAA 224 (301)
T ss_pred HHHHhCCCEEEEc
Confidence 4444579999887
No 372
>PLN02712 arogenate dehydrogenase
Probab=43.58 E-value=1.1e+02 Score=29.20 Aligned_cols=50 Identities=16% Similarity=0.125 Sum_probs=34.9
Q ss_pred ccCcccccccccccccCCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeC
Q 027062 6 AVPISKSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN 56 (229)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~ 56 (229)
+.|.+-.........+..+++|.||.. +..-..+++.|.+.|.++..+..
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~kIgIIGl-G~mG~slA~~L~~~G~~V~~~dr 400 (667)
T PLN02712 351 AQKYEYNAQVSGCVNDGSKLKIAIVGF-GNFGQFLAKTMVKQGHTVLAYSR 400 (667)
T ss_pred cCCCCccchhhhccCCCCCCEEEEEec-CHHHHHHHHHHHHCcCEEEEEEC
Confidence 345554444444445567789999995 45677899999999988776653
No 373
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=43.57 E-value=93 Score=26.57 Aligned_cols=80 Identities=13% Similarity=0.122 Sum_probs=46.1
Q ss_pred ccCCCceEEEEECCCchh-HHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCC-------cchHHHHH
Q 027062 20 SKNNKNPIIVIDNYDSFT-YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD-------SGISLQTV 91 (229)
Q Consensus 20 ~~~~~~~ilvid~~~~~~-~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~-------~~~~~~~i 91 (229)
.++++-+|.|.+....+. ..+++.|.+.|+++.++..... ..-+. ++|.+|+ | ...+.. .+-+.-.+
T Consensus 142 ~~~k~~~V~v~EsrP~~~G~~~a~~L~~~GI~vtlI~Dsav-~~~m~--~vd~Viv-G-Ad~v~~nG~v~nkiGT~~~A~ 216 (310)
T PRK08535 142 EQGKDIEVIATETRPRNQGHITAKELAEYGIPVTLIVDSAV-RYFMK--DVDKVVV-G-ADAITANGAVINKIGTSQIAL 216 (310)
T ss_pred HCCCeEEEEEecCCchhhHHHHHHHHHHCCCCEEEEehhHH-HHHHH--hCCEEEE-C-ccEEecCCCEEeHHhHHHHHH
Confidence 344556777777655544 4477888899999998874311 11222 4676665 3 222222 23333333
Q ss_pred HHhCCCCcEEEEe
Q 027062 92 LELGPTVPLFGVC 104 (229)
Q Consensus 92 ~~~~~~~PvlGIC 104 (229)
.+...++|++-.|
T Consensus 217 ~Ak~~~vPv~V~a 229 (310)
T PRK08535 217 AAHEARVPFMVAA 229 (310)
T ss_pred HHHHhCCCEEEec
Confidence 4444579999887
No 374
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=43.39 E-value=1.9e+02 Score=24.04 Aligned_cols=54 Identities=17% Similarity=0.145 Sum_probs=31.4
Q ss_pred CceEEEEE--CCCchh----HHHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCC
Q 027062 24 KNPIIVID--NYDSFT----YNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (229)
Q Consensus 24 ~~~ilvid--~~~~~~----~~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG 77 (229)
+..|.++- ..+.|. ..+.+.+++.|+.+.+...+..+. +.+...++||||+.+.
T Consensus 60 ~~~Igvi~~~~~~~~~~~~~~~i~~~~~~~gy~~~i~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 125 (327)
T TIGR02417 60 SRTIGLVIPDLENYSYARIAKELEQQCREAGYQLLIACSDDNPDQEKVVIENLLARQVDALIVASC 125 (327)
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 34566652 223333 335666778899998876542221 1233347999999764
No 375
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=43.33 E-value=1.6e+02 Score=23.46 Aligned_cols=34 Identities=12% Similarity=0.152 Sum_probs=24.0
Q ss_pred CCCceEEEEECCCchhHHHHHHHHHcCCEEEEEe
Q 027062 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYR 55 (229)
Q Consensus 22 ~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~ 55 (229)
..+.+|++|.........+.+..+..|.....-+
T Consensus 54 ~~~~~ILfV~t~~~~~~~v~~~a~~~~~~yi~~r 87 (211)
T PF00318_consen 54 KNGGKILFVGTKPQASKIVKKFAKRTGSFYINER 87 (211)
T ss_dssp TTTGGEEEEECSTTHHHHHHHHHHHHTCEEEESS
T ss_pred cCCCeEEEEEcchHHHHHHHHHHHHhCCCccCce
Confidence 3567899999866666667777777787765433
No 376
>COG4607 CeuA ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=43.31 E-value=69 Score=27.35 Aligned_cols=51 Identities=18% Similarity=0.242 Sum_probs=31.9
Q ss_pred cCCCceEEEEECCCchhHHHHHHHHHcCCEEEEE-eCC---------------------ccCHHHHhccCCCEEEECCC
Q 027062 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVY-RND---------------------ELTVEELKRKNPRGVLISPG 77 (229)
Q Consensus 21 ~~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~-~~~---------------------~~~~~~l~~~~~dgiii~GG 77 (229)
.....+|+|+|.+ ..+.|.++|+++... +.. +.+.+.+...++|.||++|=
T Consensus 55 pknPekVvv~D~g------aLD~ld~lGve~~~v~~~~~~P~yL~~y~~dky~nvGtlfEPD~Eai~a~kPdLIIiggR 127 (320)
T COG4607 55 PKNPEKVVVLDLG------ALDTLDALGVEVVAVGPGKNLPAYLQKYKDDKYANVGTLFEPDYEAIAAAKPDLIIIGGR 127 (320)
T ss_pred cCCCceEEEecch------hhhhHHHhCCccccccCCCCccHHHHHhccCCccccCcccCCCHHHHHhcCCCEEEECcH
Confidence 3345789999973 245677888887665 111 12345555668888887654
No 377
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=43.28 E-value=1e+02 Score=24.55 Aligned_cols=39 Identities=15% Similarity=0.220 Sum_probs=25.3
Q ss_pred HHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCC
Q 027062 39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (229)
Q Consensus 39 ~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG 77 (229)
.+.+++++.|+.+.+......+. +.+...++||+|+.+.
T Consensus 20 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (268)
T cd06298 20 GIDDIATMYKYNIILSNSDNDKEKELKVLNNLLAKQVDGIIFMGG 64 (268)
T ss_pred HHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 45677788899988776532121 1233447999999864
No 378
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=43.19 E-value=78 Score=26.39 Aligned_cols=41 Identities=17% Similarity=0.081 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECC
Q 027062 36 FTYNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISP 76 (229)
Q Consensus 36 ~~~~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~G 76 (229)
....+.+.+++.|+++.+...+.... +.+...++||||+.+
T Consensus 16 ~~~~i~~~a~~~g~~v~~~~~~~~~~~q~~~i~~l~~~~vDgIIi~~ 62 (302)
T TIGR02634 16 DRDIFVAAAESLGAKVFVQSANGNEAKQISQIENLIARGVDVLVIIP 62 (302)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 34557778888899988776542111 112233789999975
No 379
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=42.94 E-value=1.7e+02 Score=25.72 Aligned_cols=62 Identities=19% Similarity=0.348 Sum_probs=35.0
Q ss_pred ceEEEEECCCch-----hHHHHHHHHHcCCEEEEEeCCc--cCHHH-------HhccCCCEEEECCCCCCCCCcchH
Q 027062 25 NPIIVIDNYDSF-----TYNLCQYMGELGYHFEVYRNDE--LTVEE-------LKRKNPRGVLISPGPGAPQDSGIS 87 (229)
Q Consensus 25 ~~ilvid~~~~~-----~~~~~~~l~~~g~~~~v~~~~~--~~~~~-------l~~~~~dgiii~GG~~~~~~~~~~ 87 (229)
.|++||--.... ...+...|++.|+++.++...+ .+.+. +.+.++|.||-.|| |++.|..+.
T Consensus 27 kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~aK~ 102 (383)
T cd08186 27 SKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQAVIAIGG-GSPIDSAKS 102 (383)
T ss_pred CEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC-ccHHHHHHH
Confidence 466666422222 2457778888899887764211 12222 33347899987766 344454443
No 380
>COG1736 DPH2 Diphthamide synthase subunit DPH2 [Translation, ribosomal structure and biogenesis]
Probab=42.85 E-value=90 Score=27.24 Aligned_cols=48 Identities=19% Similarity=0.274 Sum_probs=39.6
Q ss_pred hHHHHHHHHHcCCEEEEEeCCccCHHHHhcc-CCCEEEECCCCCCCCCc
Q 027062 37 TYNLCQYMGELGYHFEVYRNDELTVEELKRK-NPRGVLISPGPGAPQDS 84 (229)
Q Consensus 37 ~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~-~~dgiii~GG~~~~~~~ 84 (229)
...+.+.++++|.++..+-.++.+.++|..+ .+|..+++|-|--+-|+
T Consensus 256 ~~~l~k~~~~~g~~~~li~~~~i~p~~L~~f~~iD~~v~taCPRi~iDd 304 (347)
T COG1736 256 ARELVKLLKEAGKEVYLIVVDEISPDKLANFDDIDAFVNTACPRIPIDD 304 (347)
T ss_pred HHHHHHHHHHcCCceEEEEecCCCHHHHhcccceeEEEEecCCCcccch
Confidence 3568888899999999888887888899887 78999999988755444
No 381
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=42.80 E-value=1.6e+02 Score=25.74 Aligned_cols=62 Identities=11% Similarity=0.162 Sum_probs=35.1
Q ss_pred ceEEEEECCCc-----hhHHHHHHHHHcCCEEEEEeCC--ccCHHH-------HhccCCCEEEECCCCCCCCCcchH
Q 027062 25 NPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRND--ELTVEE-------LKRKNPRGVLISPGPGAPQDSGIS 87 (229)
Q Consensus 25 ~~ilvid~~~~-----~~~~~~~~l~~~g~~~~v~~~~--~~~~~~-------l~~~~~dgiii~GG~~~~~~~~~~ 87 (229)
.|++||--... +...+.+.|++.|+++.++..- +.+.+. +.+.++|.||=.||. ++-|..+.
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiavGGG-S~iD~aK~ 101 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVGLGGG-SSMDTAKA 101 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEEeCCc-cHHHHHHH
Confidence 57777753222 3355777888889988766321 122222 223478999966663 44444443
No 382
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=42.80 E-value=2.2e+02 Score=24.43 Aligned_cols=89 Identities=12% Similarity=0.092 Sum_probs=51.4
Q ss_pred CceEEEEECCCch----hHHHHHHHHHcCCEEEEEeCCc---cC----HHHHhccCCCEEEECCCCCCCCCcchHHHHHH
Q 027062 24 KNPIIVIDNYDSF----TYNLCQYMGELGYHFEVYRNDE---LT----VEELKRKNPRGVLISPGPGAPQDSGISLQTVL 92 (229)
Q Consensus 24 ~~~ilvid~~~~~----~~~~~~~l~~~g~~~~v~~~~~---~~----~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~ 92 (229)
..+|.+|-..+.+ ...+.+++++.|.+++...... .+ ...+...++|+|++.+... +...+++.++
T Consensus 140 ~~kvaiv~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~i~~~~pd~V~~~~~~~---~~~~~~~~~~ 216 (351)
T cd06334 140 GKKIALVYHDSPFGKEPIEALKALAEKLGFEVVLEPVPPPGPNDQKAQWLQIRRSGPDYVILWGWGV---MNPVAIKEAK 216 (351)
T ss_pred CCeEEEEeCCCccchhhHHHHHHHHHHcCCeeeeeccCCCCcccHHHHHHHHHHcCCCEEEEecccc---hHHHHHHHHH
Confidence 5778888543444 3456677888899876433211 11 2334555899999876442 3344566666
Q ss_pred HhCCCCcEEEEehhH-HHHHHHhC
Q 027062 93 ELGPTVPLFGVCMGL-QCIGEAFG 115 (229)
Q Consensus 93 ~~~~~~PvlGIC~G~-Qlla~alG 115 (229)
+.+-+.+++|.-.+. ..+....|
T Consensus 217 ~~G~~~~~~~~~~~~~~~~~~~~g 240 (351)
T cd06334 217 RVGLDDKFIGNWWSGDEEDVKPAG 240 (351)
T ss_pred HcCCCceEEEeeccCcHHHHHHhh
Confidence 665456777654433 34444444
No 383
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=42.69 E-value=49 Score=29.42 Aligned_cols=82 Identities=12% Similarity=0.133 Sum_probs=44.5
Q ss_pred CceEEEEECCCc--------hhHHHHHHHHHcCCEEEEEeCCccC-HHH---HhccCCCEEEECCCCCCCCCcchHHHHH
Q 027062 24 KNPIIVIDNYDS--------FTYNLCQYMGELGYHFEVYRNDELT-VEE---LKRKNPRGVLISPGPGAPQDSGISLQTV 91 (229)
Q Consensus 24 ~~~ilvid~~~~--------~~~~~~~~l~~~g~~~~v~~~~~~~-~~~---l~~~~~dgiii~GG~~~~~~~~~~~~~i 91 (229)
.+|++|+-+... |..+-.-.|.-+|++|+++..|... .+. ..+...|.|++.||.|...+.- --.+
T Consensus 60 ~Kkv~V~~Np~ank~~~r~~f~kna~P~lHLaG~~V~Ivktd~~gqak~l~e~~~t~~Dii~VaGGDGT~~eVV--TGi~ 137 (535)
T KOG4435|consen 60 PKKVFVLVNPEANKRGCRDQFNKNALPLLHLAGVQVDIVKTDNQGQAKALAEAVDTQEDIIYVAGGDGTIGEVV--TGIF 137 (535)
T ss_pred cceEEEEechhhccchhhhhhhcccchheeeccceEEEEecCcHHHHHHHHHHhccCCCeEEEecCCCcHHHhh--HHHH
Confidence 356777755322 2223334455679999999976421 111 1122459999999988654321 1222
Q ss_pred HHhCCCCcEEEEehhH
Q 027062 92 LELGPTVPLFGVCMGL 107 (229)
Q Consensus 92 ~~~~~~~PvlGIC~G~ 107 (229)
++.....||-=+=.|.
T Consensus 138 Rrr~~~~pv~~~P~G~ 153 (535)
T KOG4435|consen 138 RRRKAQLPVGFYPGGY 153 (535)
T ss_pred hcccccCceeeccCcc
Confidence 3334445554444444
No 384
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=42.58 E-value=94 Score=25.84 Aligned_cols=40 Identities=13% Similarity=0.257 Sum_probs=25.7
Q ss_pred HHHHHHHHHcCCEEEEEeCCccC------HHHHhcc--CCCEEEECCC
Q 027062 38 YNLCQYMGELGYHFEVYRNDELT------VEELKRK--NPRGVLISPG 77 (229)
Q Consensus 38 ~~~~~~l~~~g~~~~v~~~~~~~------~~~l~~~--~~dgiii~GG 77 (229)
..+.+.+++.|+++.+...+... .+.+... ++||||+.+.
T Consensus 20 ~gi~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~~vdgiIi~~~ 67 (305)
T cd06324 20 RFMQAAADDLGIELEVLYAERDRFLMLQQARTILQRPDKPDALIFTNE 67 (305)
T ss_pred HHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHhccCCCEEEEcCC
Confidence 34666777889998887643211 1223445 7999999764
No 385
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=42.58 E-value=1.1e+02 Score=23.06 Aligned_cols=40 Identities=18% Similarity=0.313 Sum_probs=23.6
Q ss_pred HHHHHHHcCCEEEEEeCCccC--HHHHhc--cCCCEEEECCCCC
Q 027062 40 LCQYMGELGYHFEVYRNDELT--VEELKR--KNPRGVLISPGPG 79 (229)
Q Consensus 40 ~~~~l~~~g~~~~v~~~~~~~--~~~l~~--~~~dgiii~GG~~ 79 (229)
+.++.++.|++++.+-.+..- .+.+.+ .++|||||=+|..
T Consensus 35 ~~~~a~~~g~~~~~~QSN~EGelId~i~~a~~~~dgiIINpga~ 78 (146)
T PRK13015 35 CRAAAEALGLEVEFRQSNHEGELIDWIHEARGDVAGIVINPGAY 78 (146)
T ss_pred HHHHHHHcCCEEEEEeeCcHHHHHHHHHHhhhcCCEEEEcchHH
Confidence 444555679999888754211 112221 1579999977754
No 386
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=42.53 E-value=81 Score=22.17 Aligned_cols=40 Identities=18% Similarity=0.116 Sum_probs=28.0
Q ss_pred HHHHHHHHHcCCEEEEEeCCccCHHH----HhccCCCEEEECCCC
Q 027062 38 YNLCQYMGELGYHFEVYRNDELTVEE----LKRKNPRGVLISPGP 78 (229)
Q Consensus 38 ~~~~~~l~~~g~~~~v~~~~~~~~~~----l~~~~~dgiii~GG~ 78 (229)
..+...+++.|.++.....+ .+.++ +...++|.|.++...
T Consensus 17 ~~~~~~l~~~G~~v~~l~~~-~~~~~~~~~i~~~~pdiV~iS~~~ 60 (125)
T cd02065 17 NIVAIALRDNGFEVIDLGVD-VPPEEIVEAAKEEDADVVGLSALS 60 (125)
T ss_pred HHHHHHHHHCCCEEEEcCCC-CCHHHHHHHHHHcCCCEEEEecch
Confidence 45677889999999988654 33333 344589999998644
No 387
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=42.45 E-value=1e+02 Score=24.65 Aligned_cols=41 Identities=17% Similarity=0.218 Sum_probs=26.5
Q ss_pred HHHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCCC
Q 027062 38 YNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGP 78 (229)
Q Consensus 38 ~~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG~ 78 (229)
..+.+++++.|+++.+...+..+. +.+...++||+|+.+..
T Consensus 19 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~ 65 (264)
T cd06274 19 KRLEALARERGYQLLIACSDDDPETERETVETLIARQVDALIVAGSL 65 (264)
T ss_pred HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 346677778899998876542221 12334479999998753
No 388
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=42.42 E-value=54 Score=25.52 Aligned_cols=76 Identities=17% Similarity=0.242 Sum_probs=43.0
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCc-chHHHHHHHhCCCCcEEEE
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFGV 103 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~-~~~~~~i~~~~~~~PvlGI 103 (229)
.+|+++|........+...|+..|..+............+. ..+|.+++--. .+... -...+.+++... .|++-+
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~d~vl~d~~--~~~~~g~~~~~~l~~~~~-~~ii~l 77 (232)
T PRK10955 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVM--MPKKNGIDTLKELRQTHQ-TPVIML 77 (232)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhh-cCCCEEEEeCC--CCCCcHHHHHHHHHhcCC-CcEEEE
Confidence 47999997666677788888888887764432111112222 25787776321 12222 234455554433 788777
Q ss_pred e
Q 027062 104 C 104 (229)
Q Consensus 104 C 104 (229)
.
T Consensus 78 t 78 (232)
T PRK10955 78 T 78 (232)
T ss_pred E
Confidence 5
No 389
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=42.41 E-value=70 Score=24.03 Aligned_cols=39 Identities=26% Similarity=0.488 Sum_probs=23.8
Q ss_pred HHHHHHHHcCCEEEEEeCCccCHHHH----hcc--CCCEEEECCCCC
Q 027062 39 NLCQYMGELGYHFEVYRNDELTVEEL----KRK--NPRGVLISPGPG 79 (229)
Q Consensus 39 ~~~~~l~~~g~~~~v~~~~~~~~~~l----~~~--~~dgiii~GG~~ 79 (229)
.+.+...+.|++++.+-.+. ..+| .+. ++||+||=+|..
T Consensus 33 ~~~~~a~~~g~~v~~~QSN~--EGelid~I~~a~~~~dgiIINpga~ 77 (140)
T PF01220_consen 33 KCKETAAELGVEVEFFQSNH--EGELIDWIHEARDDVDGIIINPGAY 77 (140)
T ss_dssp HHHHHHHHTTEEEEEEE-SS--HHHHHHHHHHHTCTTSEEEEE-GGG
T ss_pred HHHHHHHHCCCeEEEEecCC--HHHHHHHHHHHHhhCCEEEEccchh
Confidence 35555667899999887652 2222 211 589999977754
No 390
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=42.16 E-value=1e+02 Score=25.17 Aligned_cols=40 Identities=8% Similarity=0.223 Sum_probs=24.9
Q ss_pred HHHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCC
Q 027062 38 YNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (229)
Q Consensus 38 ~~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG 77 (229)
..+.+.+++.|+.+.+........ +.+...++||||+.+.
T Consensus 20 ~gi~~~a~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~vdgiil~~~ 65 (280)
T cd06315 20 EGVREAAKAIGWNLRILDGRGSEAGQAAALNQAIALKPDGIVLGGV 65 (280)
T ss_pred HHHHHHHHHcCcEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 345677788899988765431111 1223348999999863
No 391
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=42.10 E-value=1.7e+02 Score=23.07 Aligned_cols=80 Identities=9% Similarity=0.110 Sum_probs=42.2
Q ss_pred CCCceEEEEECCCchhHHHHHHHHH-cCCEEEEEeCCc-cCHHHHhccCCCEEEECCCCCCCCCc-chHHHHHHHhCCCC
Q 027062 22 NNKNPIIVIDNYDSFTYNLCQYMGE-LGYHFEVYRNDE-LTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTV 98 (229)
Q Consensus 22 ~~~~~ilvid~~~~~~~~~~~~l~~-~g~~~~v~~~~~-~~~~~l~~~~~dgiii~GG~~~~~~~-~~~~~~i~~~~~~~ 98 (229)
..+++|+|+|....+...+...|+. .++.+...-.+. ...+.+....+|.+|+-- ..+... -...+.++......
T Consensus 2 ~~~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~~~pdlvllD~--~mp~~~gle~~~~l~~~~~~~ 79 (225)
T PRK10046 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDN--YLPDGRGINLLHELVQAHYPG 79 (225)
T ss_pred CCcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcCCCEEEEeC--CCCCCcHHHHHHHHHhcCCCC
Confidence 3457899999765566677888876 466544332221 112233344688877622 122222 23455555543345
Q ss_pred cEEEE
Q 027062 99 PLFGV 103 (229)
Q Consensus 99 PvlGI 103 (229)
|++-+
T Consensus 80 ~iivl 84 (225)
T PRK10046 80 DVVFT 84 (225)
T ss_pred CEEEE
Confidence 55543
No 392
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=42.00 E-value=2.1e+02 Score=24.10 Aligned_cols=100 Identities=17% Similarity=0.196 Sum_probs=61.4
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCc--cCH---HHHhccCCCEEEECCCCCCCC------C------cch
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDE--LTV---EELKRKNPRGVLISPGPGAPQ------D------SGI 86 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~--~~~---~~l~~~~~dgiii~GG~~~~~------~------~~~ 86 (229)
.-+||=||-...|...-.+..+.+|+++.=+...+ .+. +-++..++|.|||||-.+-.. + ...
T Consensus 104 PGrVLHiDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGHD~~~K~~~d~~dl~~YrnSky 183 (283)
T TIGR02855 104 PGRVLHIDGDPEYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLIEEVRPDILVITGHDAYSKNKGNYMDLNAYRHSKY 183 (283)
T ss_pred CCcEEeecCCHHHHHHHHHHHHHhCCceEEEEecchhchHHHHHHHHHhCCCEEEEeCchhhhcCCCChhhhhhhhhhHH
Confidence 45799999655577777788889999887444322 221 123445899999999643221 1 112
Q ss_pred HHHHHH---HhCCC----CcEEEEehhHHHHHHHhCCeeeecCC
Q 027062 87 SLQTVL---ELGPT----VPLFGVCMGLQCIGEAFGGKIVRSPL 123 (229)
Q Consensus 87 ~~~~i~---~~~~~----~PvlGIC~G~Qlla~alGg~v~~~~~ 123 (229)
+++.++ +...+ +=+-|-|.-+=-.-...|++-...|.
T Consensus 184 FVeaVk~aR~y~~~~D~LVIFAGACQS~yEall~AGANFASSP~ 227 (283)
T TIGR02855 184 FVETVREARKYVPSLDQLVIFAGACQSHFESLIRAGANFASSPS 227 (283)
T ss_pred HHHHHHHHHhcCCCcccEEEEcchhHHHHHHHHHcCccccCCcc
Confidence 344443 33222 34668887776665667887777663
No 393
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=41.38 E-value=1.3e+02 Score=21.32 Aligned_cols=81 Identities=19% Similarity=0.245 Sum_probs=41.9
Q ss_pred ceEEEEECCCchhHH----HHHHHHHcCCEEEEEeCCccCH-HHHhccCCCEEEECCCCCCCCCcchHHHHHHHh--CCC
Q 027062 25 NPIIVIDNYDSFTYN----LCQYMGELGYHFEVYRNDELTV-EELKRKNPRGVLISPGPGAPQDSGISLQTVLEL--GPT 97 (229)
Q Consensus 25 ~~ilvid~~~~~~~~----~~~~l~~~g~~~~v~~~~~~~~-~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~--~~~ 97 (229)
++|+++=+.+--+.. ..++.++.|.++.+.-+.+... +.+. ++|.++|. |...+- .+.+.+. ..+
T Consensus 2 k~IlLvC~aGmSTSlLV~Km~~aA~~kg~~~~I~A~s~~e~~~~~~--~~DvvLlG--PQv~y~----~~~~~~~~~~~g 73 (102)
T COG1440 2 KKILLVCAAGMSTSLLVTKMKKAAESKGKDVTIEAYSETELSEYID--NADVVLLG--PQVRYM----LKQLKEAAEEKG 73 (102)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHhCCCceEEEEechhHHHHhhh--cCCEEEEC--hHHHHH----HHHHHHHhcccC
Confidence 457776553333333 4555666788888776532222 2222 67888773 432221 2233322 245
Q ss_pred CcE-------EEEehhHHHHHHH
Q 027062 98 VPL-------FGVCMGLQCIGEA 113 (229)
Q Consensus 98 ~Pv-------lGIC~G~Qlla~a 113 (229)
+|| +|.+.|--+|-.+
T Consensus 74 iPV~vI~~~dYG~mnG~kvL~~a 96 (102)
T COG1440 74 IPVEVIDMLDYGMMNGEKVLEQA 96 (102)
T ss_pred CCeEEeCHHHccCcCcHHHHHHH
Confidence 777 4556665555544
No 394
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=41.32 E-value=36 Score=24.26 Aligned_cols=32 Identities=9% Similarity=0.283 Sum_probs=24.8
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCC
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND 57 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~ 57 (229)
+||||++. +...-.+.+.++++|+++..+..+
T Consensus 3 kkvLIanr-Geia~r~~ra~r~~Gi~tv~v~s~ 34 (110)
T PF00289_consen 3 KKVLIANR-GEIAVRIIRALRELGIETVAVNSN 34 (110)
T ss_dssp SEEEESS--HHHHHHHHHHHHHTTSEEEEEEEG
T ss_pred CEEEEECC-CHHHHHHHHHHHHhCCcceeccCc
Confidence 47888875 456677889999999999988754
No 395
>PRK13557 histidine kinase; Provisional
Probab=41.25 E-value=1.4e+02 Score=26.64 Aligned_cols=80 Identities=13% Similarity=0.160 Sum_probs=45.0
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhcc-CCCEEEECCCCCCCC--CcchHHHHHHHhCCCCc
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRK-NPRGVLISPGPGAPQ--DSGISLQTVLELGPTVP 99 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~-~~dgiii~GG~~~~~--~~~~~~~~i~~~~~~~P 99 (229)
...+|+|++........+.+.|+..|+.+..........+.+... .+|.+++-- ..+. +...+++.+++.....|
T Consensus 414 ~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~d~vi~d~--~~~~~~~~~~~~~~l~~~~~~~~ 491 (540)
T PRK13557 414 GTETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILDSHPEVDLLFTDL--IMPGGMNGVMLAREARRRQPKIK 491 (540)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHhcCCCceEEEEec--cCCCCCCHHHHHHHHHHhCCCCc
Confidence 356899999766666778888988998876544221111223222 377776632 1121 22234555555545577
Q ss_pred EEEEe
Q 027062 100 LFGVC 104 (229)
Q Consensus 100 vlGIC 104 (229)
++-+.
T Consensus 492 ii~~~ 496 (540)
T PRK13557 492 VLLTT 496 (540)
T ss_pred EEEEc
Confidence 66543
No 396
>TIGR03682 arCOG04112 arCOG04112 universal archaeal diphthamide biosynthesis domain protein. This family of proteins has been observed universally in archaeal genomes and contains a match to the TIGR00322 model for the diphthamide biosynthesis protein 2-related domain.
Probab=41.18 E-value=1.2e+02 Score=25.84 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=38.2
Q ss_pred HHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCc
Q 027062 38 YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS 84 (229)
Q Consensus 38 ~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~ 84 (229)
..+.+.+++.|.+..++-.++.+.+.|..+++|..|+++-|-...++
T Consensus 232 ~~l~~ll~~~gkk~y~i~~~~in~~kL~nf~iD~fV~~aCPr~sidd 278 (308)
T TIGR03682 232 EELKKLLEELGKEALLILLDNISPDQLRNLDFDAYVNTACPRIAIDD 278 (308)
T ss_pred HHHHHHHHHcCCeEEEEEeCCCCHHHHhcCCcCEEEEccCCCccccc
Confidence 45667778899999988888888899987789999999998665433
No 397
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=40.94 E-value=18 Score=31.03 Aligned_cols=44 Identities=18% Similarity=0.319 Sum_probs=27.5
Q ss_pred HhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEEE-------------ehhHHHHHHH
Q 027062 64 LKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV-------------CMGLQCIGEA 113 (229)
Q Consensus 64 l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlGI-------------C~G~Qlla~a 113 (229)
|+..++|++++-||.++..... .+.+. ++|+.|| |+|+.-.+..
T Consensus 88 l~~~~Id~Li~IGGdgs~~~a~----~L~e~--~i~vigiPkTIDNDi~gtd~t~Gf~TA~~~ 144 (317)
T cd00763 88 LKKHGIDALVVIGGDGSYMGAM----RLTEH--GFPCVGLPGTIDNDIPGTDYTIGFDTALNT 144 (317)
T ss_pred HHHcCCCEEEEECCchHHHHHH----HHHHc--CCCEEEecccccCCCCCCccCCCHHHHHHH
Confidence 5556889999999977642222 22222 3666655 8888877653
No 398
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=40.81 E-value=2.1e+02 Score=26.07 Aligned_cols=31 Identities=13% Similarity=0.127 Sum_probs=21.1
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEe
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYR 55 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~ 55 (229)
..+|+|+..+.+ -....++|...|+++.+..
T Consensus 12 ~~~v~V~G~G~s-G~aa~~~L~~~G~~v~~~D 42 (488)
T PRK03369 12 GAPVLVAGAGVT-GRAVLAALTRFGARPTVCD 42 (488)
T ss_pred CCeEEEEcCCHH-HHHHHHHHHHCCCEEEEEc
Confidence 457888886432 3345577888888887755
No 399
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=40.73 E-value=1.7e+02 Score=24.37 Aligned_cols=30 Identities=10% Similarity=0.164 Sum_probs=19.1
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEE
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFE 52 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~ 52 (229)
.+.+||+|.....+...+.+.....|...+
T Consensus 63 ~~g~iLfVgTk~~~~~~V~~~A~~~~~~yv 92 (258)
T PRK05299 63 NGGKILFVGTKKQAQEAIAEEAERCGMPYV 92 (258)
T ss_pred CCCEEEEEECcHHHHHHHHHHHHHhCCeee
Confidence 466788888755455556666666666554
No 400
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=40.70 E-value=1.3e+02 Score=23.86 Aligned_cols=41 Identities=24% Similarity=0.289 Sum_probs=25.5
Q ss_pred HHHHHHHHHcCCEEEEEeCCccC-----HHHH-hccCCCEEEECCCC
Q 027062 38 YNLCQYMGELGYHFEVYRNDELT-----VEEL-KRKNPRGVLISPGP 78 (229)
Q Consensus 38 ~~~~~~l~~~g~~~~v~~~~~~~-----~~~l-~~~~~dgiii~GG~ 78 (229)
..+.+.+++.|+.+.+...+... ..++ ...++||+|+.+..
T Consensus 23 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~ 69 (268)
T cd06271 23 SGLSEALAEHGYDLVLLPVDPDEDPLEVYRRLVESGLVDGVIISRTR 69 (268)
T ss_pred HHHHHHHHHCCceEEEecCCCcHHHHHHHHHHHHcCCCCEEEEecCC
Confidence 44667778889998887654221 1112 22368999997653
No 401
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=40.63 E-value=1.1e+02 Score=24.39 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=24.7
Q ss_pred HHHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCC
Q 027062 38 YNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (229)
Q Consensus 38 ~~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG 77 (229)
..+.+.+++.|+.+.+...+..+. +.+...++||+|+.+.
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgii~~~~ 64 (259)
T cd01542 19 KGILAALYENGYQMLLMNTNFSIEKEIEALELLARQKVDGIILLAT 64 (259)
T ss_pred HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 345666778899988776432111 1222347899999864
No 402
>PRK09526 lacI lac repressor; Reviewed
Probab=40.59 E-value=2.2e+02 Score=23.86 Aligned_cols=39 Identities=23% Similarity=0.305 Sum_probs=24.3
Q ss_pred HHHHHHHHHcCCEEEEEeCCccCH-------HHHhccCCCEEEECC
Q 027062 38 YNLCQYMGELGYHFEVYRNDELTV-------EELKRKNPRGVLISP 76 (229)
Q Consensus 38 ~~~~~~l~~~g~~~~v~~~~~~~~-------~~l~~~~~dgiii~G 76 (229)
..+.+.+++.|+.+.+...+.... +.+...++||||+.+
T Consensus 83 ~gi~~~a~~~g~~~~i~~~~~~~~~~~~~~l~~l~~~~vdGiii~~ 128 (342)
T PRK09526 83 AAIKSRADQLGYSVVISMVERSGVEACQAAVNELLAQRVSGVIINV 128 (342)
T ss_pred HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHhcCCCEEEEec
Confidence 345666778899998865432111 123334799999963
No 403
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=40.54 E-value=1.9e+02 Score=24.23 Aligned_cols=53 Identities=13% Similarity=0.099 Sum_probs=30.2
Q ss_pred CceEEEEEC--CCchh----HHHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECC
Q 027062 24 KNPIIVIDN--YDSFT----YNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISP 76 (229)
Q Consensus 24 ~~~ilvid~--~~~~~----~~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~G 76 (229)
+..|.++-. .+.|. ..+.+.+++.|+++.+...+.... +.+...++||+|+.+
T Consensus 63 ~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiI~~~ 127 (331)
T PRK14987 63 SRAIGVLLPSLTNQVFAEVLRGIESVTDAHGYQTMLAHYGYKPEMEQERLESMLSWNIDGLILTE 127 (331)
T ss_pred CCEEEEEeCCCcchhHHHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcC
Confidence 345666632 12233 335667778899988765431111 122334799999975
No 404
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=40.44 E-value=1.3e+02 Score=24.34 Aligned_cols=40 Identities=13% Similarity=0.084 Sum_probs=25.9
Q ss_pred HHHHHHHHHcCCEEEEEeCCcc-CH-HH----HhccCCCEEEECCC
Q 027062 38 YNLCQYMGELGYHFEVYRNDEL-TV-EE----LKRKNPRGVLISPG 77 (229)
Q Consensus 38 ~~~~~~l~~~g~~~~v~~~~~~-~~-~~----l~~~~~dgiii~GG 77 (229)
..+.+++++.|+++.+...+.. .. +. +...++||||+.+.
T Consensus 19 ~~i~~~~~~~gy~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~ 64 (269)
T cd06297 19 EGIEGALLEQRYDLALFPLLSLARLKRYLESTTLAYLTDGLLLASY 64 (269)
T ss_pred HHHHHHHHHCCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecC
Confidence 4567778888999988765421 11 11 22336899999864
No 405
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=40.42 E-value=66 Score=26.27 Aligned_cols=94 Identities=13% Similarity=0.041 Sum_probs=59.9
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCcc-C---H-HHHhcc-CCCEEEECCCCCCCCCcchHHHHHHHhC--
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL-T---V-EELKRK-NPRGVLISPGPGAPQDSGISLQTVLELG-- 95 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~-~---~-~~l~~~-~~dgiii~GG~~~~~~~~~~~~~i~~~~-- 95 (229)
.|+|+|.... .....+...++..|.++..++.-.. + . ..+... .+|.|+++-..+ ...+.+.+...+
T Consensus 1 ~~~vlvtR~~-~~~~~~~~~l~~~G~~~~~~P~i~~~~~~~l~~~l~~l~~~d~vvfTS~~a----v~~~~~~l~~~~~~ 75 (248)
T COG1587 1 GMRVLVTRPR-EQAEELAALLRKAGAEPLELPLIEIEPLPDLEVALEDLDSADWVVFTSPNA----VRFFFEALKEQGLD 75 (248)
T ss_pred CcEEEEeCch-hhhHHHHHHHHhCCCcceeecceeeecchhHHHHHhccccCCEEEEECHHH----HHHHHHHHHhhccc
Confidence 3688888863 4566788899999998887764321 1 1 222222 368899885432 122223332222
Q ss_pred --CCCcEEEEehhHHHHHHHhCCeeeecC
Q 027062 96 --PTVPLFGVCMGLQCIGEAFGGKIVRSP 122 (229)
Q Consensus 96 --~~~PvlGIC~G~Qlla~alGg~v~~~~ 122 (229)
.+++++.|.-.---..+.+|.++...+
T Consensus 76 ~~~~~~i~aVG~~Ta~~l~~~G~~~~~~p 104 (248)
T COG1587 76 ALKNKKIAAVGEKTAEALRKLGIKVDFIP 104 (248)
T ss_pred ccccCeEEEEcHHHHHHHHHhCCCCCcCC
Confidence 358999999888888888887766554
No 406
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=40.32 E-value=1.3e+02 Score=23.89 Aligned_cols=61 Identities=16% Similarity=0.201 Sum_probs=33.4
Q ss_pred HHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEEEe
Q 027062 39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (229)
Q Consensus 39 ~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlGIC 104 (229)
.+.+.+++.|+.+.+...+.... +.+...++||+|+.++.. .. ...++.+.+ .++|++.+.
T Consensus 20 ~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~--~~-~~~~~~~~~--~~ipvV~~~ 86 (266)
T cd06282 20 GIQEEARAAGYSLLLATTDYDAEREADAVETLLRQRVDGLILTVADA--AT-SPALDLLDA--ERVPYVLAY 86 (266)
T ss_pred HHHHHHHHCCCEEEEeeCCCCHHHHHHHHHHHHhcCCCEEEEecCCC--Cc-hHHHHHHhh--CCCCEEEEe
Confidence 45677788899998876431111 123334789999965432 11 123333333 357766553
No 407
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=40.29 E-value=73 Score=25.73 Aligned_cols=53 Identities=19% Similarity=0.209 Sum_probs=36.9
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCC
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGP 78 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~ 78 (229)
|+++|+.. +.+-..+++.|.+.|.++..+..++...++.....++..++.|-.
T Consensus 1 m~iiIiG~-G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~ 53 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDA 53 (225)
T ss_pred CEEEEECC-cHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecC
Confidence 57888886 578888999999999999998876433333222135666666643
No 408
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=40.29 E-value=72 Score=24.55 Aligned_cols=35 Identities=14% Similarity=0.328 Sum_probs=28.6
Q ss_pred CCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeC
Q 027062 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN 56 (229)
Q Consensus 22 ~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~ 56 (229)
...+..++||-...|...+.++++..|+.+++...
T Consensus 7 ~pd~~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~ 41 (182)
T COG4567 7 GPDKSLLLVDDDTPFLRTLARAMERRGFAVVTAES 41 (182)
T ss_pred CCCceeEEecCChHHHHHHHHHHhccCceeEeecc
Confidence 33346889997667999999999999999998764
No 409
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=40.28 E-value=1.5e+02 Score=26.15 Aligned_cols=63 Identities=14% Similarity=0.241 Sum_probs=36.2
Q ss_pred CceEEEEECC----CchhHHHHHHHHHcCCEEEEEeCC--ccCHHHH-------hccCCCEEEECCCCCCCCCcchH
Q 027062 24 KNPIIVIDNY----DSFTYNLCQYMGELGYHFEVYRND--ELTVEEL-------KRKNPRGVLISPGPGAPQDSGIS 87 (229)
Q Consensus 24 ~~~ilvid~~----~~~~~~~~~~l~~~g~~~~v~~~~--~~~~~~l-------~~~~~dgiii~GG~~~~~~~~~~ 87 (229)
..+++|+.-. .++...+.+.|++.|+++.++..- +.+.+.+ .+.++|.||=.||. ++-|..+.
T Consensus 49 ~~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~D~IiavGGG-S~iD~AKa 124 (395)
T PRK15454 49 LKHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESGCDGVIAFGGG-SVLDAAKA 124 (395)
T ss_pred CCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCcCEEEEeCCh-HHHHHHHH
Confidence 3567777421 123355778888999988776311 1222222 23479999988874 44444443
No 410
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=40.22 E-value=1.3e+02 Score=24.12 Aligned_cols=40 Identities=18% Similarity=0.276 Sum_probs=25.1
Q ss_pred HHHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCC
Q 027062 38 YNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (229)
Q Consensus 38 ~~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG 77 (229)
..+.+++++.|+++.+...+.... +.+...++||||+.+.
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (270)
T cd06296 19 RGVEEAAAAAGYDVVLSESGRRTSPERQWVERLSARRTDGVILVTP 64 (270)
T ss_pred HHHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHHcCCCEEEEecC
Confidence 345667778899998876542221 1122337899998764
No 411
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.99 E-value=25 Score=34.44 Aligned_cols=30 Identities=20% Similarity=0.383 Sum_probs=19.7
Q ss_pred CeEEEEEcCCCceEEEEeCCCCcEEEEeccC
Q 027062 170 ALEVTAWTEDGLIMAARHKKYKHLQGVQFHP 200 (229)
Q Consensus 170 ~~~~la~~~~~~i~a~~~~~~~~i~g~QfHP 200 (229)
..+++-+.....|......++ .+++-||||
T Consensus 116 TIrIWNwqsr~~iavltGHnH-YVMcAqFhp 145 (1202)
T KOG0292|consen 116 TIRIWNWQSRKCIAVLTGHNH-YVMCAQFHP 145 (1202)
T ss_pred eEEEEeccCCceEEEEecCce-EEEeeccCC
Confidence 345555555555666665554 589999999
No 412
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=39.90 E-value=1.8e+02 Score=23.73 Aligned_cols=40 Identities=23% Similarity=0.201 Sum_probs=26.3
Q ss_pred HHHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCC
Q 027062 38 YNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (229)
Q Consensus 38 ~~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG 77 (229)
..+.+.+++.|+.+.+......+. +.+...++||||+.+.
T Consensus 19 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~ 64 (288)
T cd01538 19 PNFEAALKELGAEVIVQNANGDPAKQISQIENMIAKGVDVLVIAPV 64 (288)
T ss_pred HHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 346677788999999887542211 1233348999999864
No 413
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=39.87 E-value=1.4e+02 Score=26.08 Aligned_cols=62 Identities=16% Similarity=0.122 Sum_probs=35.5
Q ss_pred ceEEEEECCCc-hhHHHHHHHHHcCCEEEEEeCC-ccCHHH-------HhccCCCEEEECCCCCCCCCcchH
Q 027062 25 NPIIVIDNYDS-FTYNLCQYMGELGYHFEVYRND-ELTVEE-------LKRKNPRGVLISPGPGAPQDSGIS 87 (229)
Q Consensus 25 ~~ilvid~~~~-~~~~~~~~l~~~g~~~~v~~~~-~~~~~~-------l~~~~~dgiii~GG~~~~~~~~~~ 87 (229)
.|++||--... ....+...|++.|+++.++... +.+.+. ..+.++|.||=.||. ++.|..+.
T Consensus 23 ~r~livtd~~~~~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGG-S~~D~aK~ 93 (374)
T cd08183 23 RRVLLVTGASSLRAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNAGCDVVIAIGGG-SVIDAGKA 93 (374)
T ss_pred CcEEEEECCchHHHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhcCCCEEEEecCc-hHHHHHHH
Confidence 56777642222 3345667788889988776422 122222 223378999988874 44454443
No 414
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=39.73 E-value=1.3e+02 Score=22.67 Aligned_cols=40 Identities=23% Similarity=0.527 Sum_probs=24.0
Q ss_pred HHHHHHHcCCEEEEEeCCccC--HHHHhcc--CCCEEEECCCCC
Q 027062 40 LCQYMGELGYHFEVYRNDELT--VEELKRK--NPRGVLISPGPG 79 (229)
Q Consensus 40 ~~~~l~~~g~~~~v~~~~~~~--~~~l~~~--~~dgiii~GG~~ 79 (229)
+.+..++.|++++.+-.+..- .+.+.+. ++|||||=+|..
T Consensus 35 ~~~~a~~~g~~v~~~QSN~EGelId~I~~a~~~~dgiiINpga~ 78 (146)
T PRK05395 35 LEEEAAELGVELEFFQSNHEGELIDRIHEARDGADGIIINPGAY 78 (146)
T ss_pred HHHHHHHcCCEEEEEeeCcHHHHHHHHHhcccCCcEEEECchHH
Confidence 444556679999888754211 1222221 589999977754
No 415
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=39.70 E-value=1.5e+02 Score=21.58 Aligned_cols=55 Identities=15% Similarity=0.309 Sum_probs=35.2
Q ss_pred EEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCH-----HHHhccCCCEEEECCCCCCC
Q 027062 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTV-----EELKRKNPRGVLISPGPGAP 81 (229)
Q Consensus 27 ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~-----~~l~~~~~dgiii~GG~~~~ 81 (229)
-+++.-.||......+++++.|.++...+..+.+- ..+....++-|++.|+.|..
T Consensus 38 d~iiGDfDSi~~~~~~~~~~~~~~~~~~p~kD~TD~e~Al~~~~~~~~~~i~v~Ga~GgR 97 (123)
T PF04263_consen 38 DLIIGDFDSISPEVLEFYKSKGVEIIHFPEKDYTDLEKALEYAIEQGPDEIIVLGALGGR 97 (123)
T ss_dssp SEEEC-SSSS-HHHHHHHHHCTTEEEEE-STTS-HHHHHHHHHHHTTTSEEEEES-SSSS
T ss_pred CEEEecCCCCChHHHHHHHhhccceecccccccCHHHHHHHHHHHCCCCEEEEEecCCCc
Confidence 35554458888888899999999998888432221 11233478899999998864
No 416
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=39.65 E-value=70 Score=26.83 Aligned_cols=45 Identities=13% Similarity=0.072 Sum_probs=28.4
Q ss_pred HHHHHHHHHcCCEEEEEeCCc-cCHHH----HhccCCCEEEECCCCCCCC
Q 027062 38 YNLCQYMGELGYHFEVYRNDE-LTVEE----LKRKNPRGVLISPGPGAPQ 82 (229)
Q Consensus 38 ~~~~~~l~~~g~~~~v~~~~~-~~~~~----l~~~~~dgiii~GG~~~~~ 82 (229)
..+.+.|++.|.++++..... ....+ +...++|.||+.||-|+.+
T Consensus 17 ~~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vv~~GGDGTi~ 66 (293)
T TIGR03702 17 REAVGDLRDEGIQLHVRVTWEKGDAQRYVAEALALGVSTVIAGGGDGTLR 66 (293)
T ss_pred HHHHHHHHHCCCeEEEEEecCCCCHHHHHHHHHHcCCCEEEEEcCChHHH
Confidence 345667888999887665321 12222 2223679999999988643
No 417
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=39.46 E-value=23 Score=29.41 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=29.5
Q ss_pred CEEEECCCCCCCCCcchHHHHHHHh-CCCCcEEEEeh
Q 027062 70 RGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCM 105 (229)
Q Consensus 70 dgiii~GG~~~~~~~~~~~~~i~~~-~~~~PvlGIC~ 105 (229)
--++|+|-||-+.-+..+++.+.+. ..+.+|+||-.
T Consensus 4 li~~IPGNPGlv~fY~~Fl~~L~~~l~~~~~i~~ish 40 (266)
T PF10230_consen 4 LIVFIPGNPGLVEFYEEFLSALYEKLNPQFEILGISH 40 (266)
T ss_pred EEEEECCCCChHHHHHHHHHHHHHhCCCCCeeEEecC
Confidence 3588999999888788888888765 67899999874
No 418
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=39.40 E-value=1.3e+02 Score=24.04 Aligned_cols=76 Identities=11% Similarity=0.062 Sum_probs=43.1
Q ss_pred CCceEEEEECCCch----hHHHHHHHHHcCCEEEEEeCCccCHHHHh----ccCCCEEEECCCCCCC-CCcchHHHHHHH
Q 027062 23 NKNPIIVIDNYDSF----TYNLCQYMGELGYHFEVYRNDELTVEELK----RKNPRGVLISPGPGAP-QDSGISLQTVLE 93 (229)
Q Consensus 23 ~~~~ilvid~~~~~----~~~~~~~l~~~g~~~~v~~~~~~~~~~l~----~~~~dgiii~GG~~~~-~~~~~~~~~i~~ 93 (229)
.+.+|++--..+.. ...+...|+..|+++..+..+ .+.+++. +.++|.|.+|..-... .....+++.+++
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~-vp~e~~v~~~~~~~~~~V~lS~~~~~~~~~~~~~i~~L~~ 165 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVM-VPIEKILEAAKEHKADIIGLSGLLVPSLDEMVEVAEEMNR 165 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEEccchhccHHHHHHHHHHHHh
Confidence 34566554332222 234567789999999988866 6666654 3478999887543211 122234455554
Q ss_pred hCCCCc
Q 027062 94 LGPTVP 99 (229)
Q Consensus 94 ~~~~~P 99 (229)
...+.|
T Consensus 166 ~~~~~~ 171 (213)
T cd02069 166 RGIKIP 171 (213)
T ss_pred cCCCCe
Confidence 444444
No 419
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=39.32 E-value=1.4e+02 Score=26.56 Aligned_cols=76 Identities=18% Similarity=0.324 Sum_probs=40.7
Q ss_pred EEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCc-chHHHHHHHhCCCCcEEEEe
Q 027062 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFGVC 104 (229)
Q Consensus 27 ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~-~~~~~~i~~~~~~~PvlGIC 104 (229)
|+|||........+.+.++..|+.+............+....+|.|++-- ..+... -.++..+++.....|++-+.
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~DlVllD~--~~p~~~g~~ll~~l~~~~~~~~vIvlt 77 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALARGQPDLLITDV--RMPGEDGLDLLPQIKKRHPQLPVIVMT 77 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCCCCEEEEcC--CCCCCCHHHHHHHHHHhCCCCeEEEEe
Confidence 57888755566778888888898876543211111223333577776621 111111 22344454444456666553
No 420
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=39.24 E-value=1.8e+02 Score=24.21 Aligned_cols=76 Identities=8% Similarity=0.191 Sum_probs=45.8
Q ss_pred ceEEEEECCCchh-HHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCC-------CcchHHHHHHHhCC
Q 027062 25 NPIIVIDNYDSFT-YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-------DSGISLQTVLELGP 96 (229)
Q Consensus 25 ~~ilvid~~~~~~-~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~-------~~~~~~~~i~~~~~ 96 (229)
.+|.|.+...... ..+++.|.+.|+++.++... .-..-+. ++|.+++ | ...+. ..+...-.+.+...
T Consensus 110 ~~V~v~ESrP~~eG~~~a~~L~~~GI~vtli~Ds-a~~~~m~--~vd~Vlv-G-Ad~V~~nG~v~nkvGT~~~Al~A~~~ 184 (253)
T PRK06372 110 KSVYILESRPMLEGIDMAKLLVKSGIDVVLLTDA-SMCEAVL--NVDAVIV-G-SDSVLYDGGLIHKNGTFPLALCARYL 184 (253)
T ss_pred CEEEEecCCCchHHHHHHHHHHHCCCCEEEEehh-HHHHHHH--hCCEEEE-C-ccEEecCCCEeehhhHHHHHHHHHHc
Confidence 4788888766554 45788899999999888632 1111222 4677766 2 22222 22333444444556
Q ss_pred CCcEEEEeh
Q 027062 97 TVPLFGVCM 105 (229)
Q Consensus 97 ~~PvlGIC~ 105 (229)
++|++=.|-
T Consensus 185 ~vPv~V~~~ 193 (253)
T PRK06372 185 KKPFYSLTI 193 (253)
T ss_pred CCCEEEEee
Confidence 799998773
No 421
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=39.01 E-value=1.3e+02 Score=29.13 Aligned_cols=76 Identities=12% Similarity=0.177 Sum_probs=45.7
Q ss_pred ceEEEEECCCc-h-----hHHHHHHHHHcCCEEEEEeCCccCHHHH-hccCCCEEEECCCCCCCCCcchHHHHHHHhCCC
Q 027062 25 NPIIVIDNYDS-F-----TYNLCQYMGELGYHFEVYRNDELTVEEL-KRKNPRGVLISPGPGAPQDSGISLQTVLELGPT 97 (229)
Q Consensus 25 ~~ilvid~~~~-~-----~~~~~~~l~~~g~~~~v~~~~~~~~~~l-~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~ 97 (229)
|.|+||+...+ . .+.+.+.|++.|+++...........-+ ...++.++|+.= .+ . ...++..+++...+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~-~~~~~~~~~~~~~~ 76 (714)
T PRK15400 1 MNVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIENNARLCGVIFDW--DK-Y-NLELCEEISKMNEN 76 (714)
T ss_pred CcEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcccceeEEEEec--ch-h-hHHHHHHHHHhCCC
Confidence 45777765321 1 3568888999999998776432111111 122578899972 11 1 13356677777778
Q ss_pred CcEEEEe
Q 027062 98 VPLFGVC 104 (229)
Q Consensus 98 ~PvlGIC 104 (229)
+||+=..
T Consensus 77 ~Pv~~~~ 83 (714)
T PRK15400 77 LPLYAFA 83 (714)
T ss_pred CCEEEEc
Confidence 9988743
No 422
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=38.82 E-value=2.8e+02 Score=24.64 Aligned_cols=32 Identities=16% Similarity=0.234 Sum_probs=23.1
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeC
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN 56 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~ 56 (229)
.++|+|+..+ .--...++.|.+.|+.+.+...
T Consensus 5 ~~~~~v~G~g-~~G~~~a~~l~~~g~~v~~~d~ 36 (445)
T PRK04308 5 NKKILVAGLG-GTGISMIAYLRKNGAEVAAYDA 36 (445)
T ss_pred CCEEEEECCC-HHHHHHHHHHHHCCCEEEEEeC
Confidence 4578999875 3333468888999998887764
No 423
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=38.81 E-value=2.2e+02 Score=24.75 Aligned_cols=63 Identities=11% Similarity=0.221 Sum_probs=35.3
Q ss_pred ceEEEEECCCc----hhHHHHHHHHHcCCEEEEEeCC--ccCHHH-------HhccCCCEEEECCCCCCCCCcchHH
Q 027062 25 NPIIVIDNYDS----FTYNLCQYMGELGYHFEVYRND--ELTVEE-------LKRKNPRGVLISPGPGAPQDSGISL 88 (229)
Q Consensus 25 ~~ilvid~~~~----~~~~~~~~l~~~g~~~~v~~~~--~~~~~~-------l~~~~~dgiii~GG~~~~~~~~~~~ 88 (229)
.+++||--... +...+.+.|+..|+++.++... +.+.+. +...++|.||=.||. ++.|..+.+
T Consensus 24 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IiaiGGG-s~~D~AK~v 99 (370)
T cd08551 24 RKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAVGGG-SVLDTAKAI 99 (370)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCc-hHHHHHHHH
Confidence 56777743222 2346778888888888766421 122222 223478999877763 444444443
No 424
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=38.76 E-value=1.2e+02 Score=26.97 Aligned_cols=55 Identities=15% Similarity=0.259 Sum_probs=39.6
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCC---ccCHHHHhcc-----CCCEEEECCCC
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND---ELTVEELKRK-----NPRGVLISPGP 78 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~---~~~~~~l~~~-----~~dgiii~GG~ 78 (229)
...++||+.+ +.|-..+.+.++..|.++.++... ..+.+++++. +++.|.++=..
T Consensus 79 pgdkVLv~~n-G~FG~R~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~E 141 (383)
T COG0075 79 PGDKVLVVVN-GKFGERFAEIAERYGAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNE 141 (383)
T ss_pred CCCeEEEEeC-ChHHHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEEecc
Confidence 4568999997 589999999999999999988643 2344444321 46777776553
No 425
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=38.72 E-value=22 Score=30.65 Aligned_cols=44 Identities=20% Similarity=0.302 Sum_probs=28.3
Q ss_pred HhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEEE-------------ehhHHHHHHH
Q 027062 64 LKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV-------------CMGLQCIGEA 113 (229)
Q Consensus 64 l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlGI-------------C~G~Qlla~a 113 (229)
++..++|++|+.||.++...... +.+ .++|+.|| |.|+.-.+..
T Consensus 90 l~~~~Id~LivIGGdgS~~~a~~----L~~--~gi~vigiPkTIDNDl~gtd~tiGfdTA~~~ 146 (324)
T TIGR02483 90 LKELGLDALIAIGGDGTLGIARR----LAD--KGLPVVGVPKTIDNDLEATDYTFGFDTAVEI 146 (324)
T ss_pred HHHcCCCEEEEECCchHHHHHHH----HHh--cCCCEEeeccccCCCCcCCccCcCHHHHHHH
Confidence 55568999999999887432222 222 23555554 8999887664
No 426
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=38.65 E-value=2.1e+02 Score=23.86 Aligned_cols=54 Identities=17% Similarity=0.185 Sum_probs=30.6
Q ss_pred CceEEEEEC--CCchhH----HHHHHHHHcCCEEEEEeCCccCHH------HHhccCCCEEEECCC
Q 027062 24 KNPIIVIDN--YDSFTY----NLCQYMGELGYHFEVYRNDELTVE------ELKRKNPRGVLISPG 77 (229)
Q Consensus 24 ~~~ilvid~--~~~~~~----~~~~~l~~~g~~~~v~~~~~~~~~------~l~~~~~dgiii~GG 77 (229)
+..|.|+-. .+.|.. .+.+.+++.|+.+.+...+..... .+...++||+|+.+.
T Consensus 59 ~~~Igvv~~~~~~~f~~~l~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 124 (329)
T TIGR01481 59 TTTVGVIIPDISNIYYAELARGIEDIATMYKYNIILSNSDEDPEKEVQVLNTLLSKQVDGIIFMGG 124 (329)
T ss_pred CCEEEEEeCCCCchhHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 345666532 223433 345566778999988764321111 223347999999763
No 427
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=38.47 E-value=1.1e+02 Score=26.43 Aligned_cols=51 Identities=10% Similarity=0.034 Sum_probs=27.4
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhcc-CCCEEEECC
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRK-NPRGVLISP 76 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~-~~dgiii~G 76 (229)
|+|++..-.+.....+.+++++.++++...+.. .+.+.++.. ++|++++.+
T Consensus 2 ~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~ii~~~ 53 (330)
T PRK12480 2 TKIMFFGTRDYEKEMALNWGKKNNVEVTTSKEL-LSSATVDQLKDYDGVTTMQ 53 (330)
T ss_pred cEEEEEeCcHHHHHHHHHHHHhcCeEEEEcCCC-CCHHHHHHhCCCCEEEEec
Confidence 677777764444445556677777666554321 232222222 567766644
No 428
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=38.46 E-value=23 Score=30.20 Aligned_cols=46 Identities=17% Similarity=0.333 Sum_probs=28.7
Q ss_pred HHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEE-------------EehhHHHHHHH
Q 027062 63 ELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG-------------VCMGLQCIGEA 113 (229)
Q Consensus 63 ~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlG-------------IC~G~Qlla~a 113 (229)
.+++.++|++|+.||.++......+.+. . ++|+.| .|+|+.-.+..
T Consensus 86 ~l~~~~Id~Li~IGGdgs~~~a~~L~e~---~--~i~vigiPkTIDNDl~~td~s~GfdTA~~~ 144 (301)
T TIGR02482 86 NLKKLGIEGLVVIGGDGSYTGAQKLYEE---G--GIPVIGLPGTIDNDIPGTDYTIGFDTALNT 144 (301)
T ss_pred HHHHcCCCEEEEeCCchHHHHHHHHHHh---h--CCCEEeecccccCCCcCcccCcChhHHHHH
Confidence 3556689999999998764332222111 1 355555 49999886553
No 429
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=38.23 E-value=1.8e+02 Score=23.22 Aligned_cols=40 Identities=13% Similarity=0.096 Sum_probs=24.9
Q ss_pred HHHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCC
Q 027062 38 YNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (229)
Q Consensus 38 ~~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG 77 (229)
..+.+.+++.|+++.+........ +.+...++||+|+.+.
T Consensus 19 ~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~vdgiii~~~ 64 (267)
T cd06322 19 NAMKEEAKKQKVNLIVSIANQDLNKQLSDVEDFITKKVDAIVLSPV 64 (267)
T ss_pred HHHHHHHHhcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 446667778899998765432111 1122347999999753
No 430
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=38.05 E-value=27 Score=35.72 Aligned_cols=50 Identities=8% Similarity=0.200 Sum_probs=31.2
Q ss_pred HhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEE---------------EehhHHHHHHH
Q 027062 64 LKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG---------------VCMGLQCIGEA 113 (229)
Q Consensus 64 l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlG---------------IC~G~Qlla~a 113 (229)
+++.++|++|+-||.++......+.+...+.+.+++|.| .|+|+.-.+..
T Consensus 192 lkkl~Id~LVvIGGDgS~t~A~~LaEy~~~~g~~I~VIGIPKTIDNDL~g~~tD~S~GFdTA~k~ 256 (1328)
T PTZ00468 192 CEKLKLHGLVVIGGDDSNTNAAVLAEYFKRNSSSTVVVGCPKTIDGDLKNEVIETSFGYDTAVKT 256 (1328)
T ss_pred HHHhCCCEEEEECCchHHHHHHHHHHHHHhcCCCeeEEEEeEEEcCCCCCCcCCCCCCHHHHHHH
Confidence 344578999999998865444443333333333355555 49999887664
No 431
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=37.88 E-value=2.3e+02 Score=24.98 Aligned_cols=63 Identities=14% Similarity=0.284 Sum_probs=35.5
Q ss_pred ceEEEEECC----CchhHHHHHHHHHcCCEEEEEeCCc--cCHH-------HHhccCCCEEEECCCCCCCCCcchHH
Q 027062 25 NPIIVIDNY----DSFTYNLCQYMGELGYHFEVYRNDE--LTVE-------ELKRKNPRGVLISPGPGAPQDSGISL 88 (229)
Q Consensus 25 ~~ilvid~~----~~~~~~~~~~l~~~g~~~~v~~~~~--~~~~-------~l~~~~~dgiii~GG~~~~~~~~~~~ 88 (229)
.|++||--. .++...+.+.|++.|+++.++..-+ .+.+ .+.+.++|.||=.||. ++.|..+.+
T Consensus 22 ~k~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGG-S~iD~AK~i 97 (398)
T cd08178 22 KRAFIVTDRFMVKLGYVDKVIDVLKRRGVETEVFSDVEPDPSLETVRKGLELMNSFKPDTIIALGGG-SPMDAAKIM 97 (398)
T ss_pred CeEEEEcChhHHhCccHHHHHHHHHHCCCeEEEecCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCc-cHHHHHHHH
Confidence 567777421 1144557788888899887764211 1222 2233478999966663 444444443
No 432
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=37.85 E-value=2.4e+02 Score=27.52 Aligned_cols=33 Identities=12% Similarity=-0.118 Sum_probs=26.0
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeC
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN 56 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~ 56 (229)
..+|+||..+.+-...++++|.+.|++|.....
T Consensus 4 ~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~ 36 (809)
T PRK14573 4 SLFYHFIGIGGIGMSALAHILLDRGYSVSGSDL 36 (809)
T ss_pred cceEEEEEecHHhHHHHHHHHHHCCCeEEEECC
Confidence 346999998766666678999999999987764
No 433
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=37.83 E-value=68 Score=26.74 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=19.4
Q ss_pred CCCEEEECCCCCCCCCcchHHHHHHHh-CCCCcEEEE
Q 027062 68 NPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV 103 (229)
Q Consensus 68 ~~dgiii~GG~~~~~~~~~~~~~i~~~-~~~~PvlGI 103 (229)
..|+|=+-||. ...+.++.+ .+++||.|-
T Consensus 107 gA~aVKlEGG~-------~~~~~i~~L~~~gIPV~gH 136 (268)
T COG0413 107 GADAVKLEGGE-------EMAETIKRLTERGIPVMGH 136 (268)
T ss_pred CCCEEEEcCCH-------HHHHHHHHHHHcCCceEEE
Confidence 56889998884 233444443 467999983
No 434
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=37.80 E-value=1.3e+02 Score=22.47 Aligned_cols=55 Identities=7% Similarity=0.095 Sum_probs=38.0
Q ss_pred cCCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHH-HhccCCCEEEECCC
Q 027062 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEE-LKRKNPRGVLISPG 77 (229)
Q Consensus 21 ~~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~-l~~~~~dgiii~GG 77 (229)
.-..++|.|+......-..+...|.+.|+.+.+.+....+.++ +. +.|.|+..=|
T Consensus 25 ~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~--~ADIVvsAtg 80 (140)
T cd05212 25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVH--DADVVVVGSP 80 (140)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHh--hCCEEEEecC
Confidence 4457789999975556677899999999999999865333333 33 3476665444
No 435
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=37.79 E-value=2.4e+02 Score=23.66 Aligned_cols=40 Identities=15% Similarity=0.166 Sum_probs=25.0
Q ss_pred HHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCCC
Q 027062 39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGP 78 (229)
Q Consensus 39 ~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG~ 78 (229)
.+.+++++.|+.+.+........ +.+...++||||+.+..
T Consensus 85 gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 130 (342)
T PRK10014 85 GLTEALEAQGRMVFLLQGGKDGEQLAQRFSTLLNQGVDGVVIAGAA 130 (342)
T ss_pred HHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 35667778899887765432111 12333479999998753
No 436
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=37.71 E-value=1e+02 Score=26.54 Aligned_cols=38 Identities=26% Similarity=0.157 Sum_probs=27.5
Q ss_pred HHHcCCEEEEEeCCccC---HHHHhccCCCEEEECCCCCCC
Q 027062 44 MGELGYHFEVYRNDELT---VEELKRKNPRGVLISPGPGAP 81 (229)
Q Consensus 44 l~~~g~~~~v~~~~~~~---~~~l~~~~~dgiii~GG~~~~ 81 (229)
.+..++++.+.+|+..+ ..++.++++|-|+|-|||-.+
T Consensus 48 aellNA~Vlttpwg~ynes~~~eI~~lnpd~VLIIGGp~AV 88 (337)
T COG2247 48 AELLNAPVLTTPWGIYNESVLDEIIELNPDLVLIIGGPIAV 88 (337)
T ss_pred HHHhCCeeEecCcccccHHHHHHHHhhCCceEEEECCCCcC
Confidence 34568888877765444 345666799999999998754
No 437
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=37.63 E-value=22 Score=29.71 Aligned_cols=37 Identities=24% Similarity=0.316 Sum_probs=25.0
Q ss_pred CEEEECCCCCCCCCcchHHHHHHHhCCCCcEEEEehh
Q 027062 70 RGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMG 106 (229)
Q Consensus 70 dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlGIC~G 106 (229)
.|||+++|.......-..++.+|+++...||==+=.|
T Consensus 2 rGIVi~~g~~~~~~a~~lI~~LR~~g~~LPIEI~~~~ 38 (271)
T PF11051_consen 2 RGIVITAGDKYLWLALRLIRVLRRLGNTLPIEIIYPG 38 (271)
T ss_pred CEEEEEecCccHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 5999999874332223457778888889998654443
No 438
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=37.62 E-value=1e+02 Score=26.60 Aligned_cols=75 Identities=15% Similarity=0.117 Sum_probs=40.0
Q ss_pred ceEEEEECCCc---hhHHHHHHHHHcCCEEEEEeCC-ccCHHHH-------hccCCCEEEECCCCCCCCCcchHHHHHHH
Q 027062 25 NPIIVIDNYDS---FTYNLCQYMGELGYHFEVYRND-ELTVEEL-------KRKNPRGVLISPGPGAPQDSGISLQTVLE 93 (229)
Q Consensus 25 ~~ilvid~~~~---~~~~~~~~l~~~g~~~~v~~~~-~~~~~~l-------~~~~~dgiii~GG~~~~~~~~~~~~~i~~ 93 (229)
.|++||--... +...+.+.|++.|+.+...... +.+.+.+ .+.++|.||=.|| |++-|..+.+...
T Consensus 23 ~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GS~iD~aK~ia~~-- 99 (351)
T cd08170 23 KRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARDNGADVVIGIGG-GKTLDTAKAVADY-- 99 (351)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhcCCCEEEEecC-chhhHHHHHHHHH--
Confidence 56766642112 2344667778888876432211 1222222 2337899988887 4555555544432
Q ss_pred hCCCCcEEEEe
Q 027062 94 LGPTVPLFGVC 104 (229)
Q Consensus 94 ~~~~~PvlGIC 104 (229)
.++|++.|-
T Consensus 100 --~~~P~iaIP 108 (351)
T cd08170 100 --LGAPVVIVP 108 (351)
T ss_pred --cCCCEEEeC
Confidence 246766654
No 439
>PRK06242 flavodoxin; Provisional
Probab=37.53 E-value=1.6e+02 Score=21.49 Aligned_cols=49 Identities=10% Similarity=0.098 Sum_probs=25.2
Q ss_pred ceEEEEE-CC-CchhHHHHHHHHH-cCCEEEEEeCCccCHHHHhccCCCEEEECCCC
Q 027062 25 NPIIVID-NY-DSFTYNLCQYMGE-LGYHFEVYRNDELTVEELKRKNPRGVLISPGP 78 (229)
Q Consensus 25 ~~ilvid-~~-~~~~~~~~~~l~~-~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~ 78 (229)
|+++||= .. .+.+..+++.+.+ ++.++ +...+....++. ++|.||+ |+|
T Consensus 1 mk~~IiY~S~~tGnT~~~A~~ia~~l~~~~--~~i~~~~~~~~~--~~d~ii~-g~p 52 (150)
T PRK06242 1 MKALIVYASVHHGNTEKIAKAIAEVLDAEV--IDPGDVNPEDLS--EYDLIGF-GSG 52 (150)
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHhcCcEE--ecHHHCCcccHh--HCCEEEE-eCc
Confidence 4556653 32 3567777777643 45443 332222223344 5687776 444
No 440
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=37.44 E-value=2.5e+02 Score=24.30 Aligned_cols=62 Identities=19% Similarity=0.306 Sum_probs=36.2
Q ss_pred ceEEEEECCCc-----hhHHHHHHHHHcCCEEEEEeCC--ccCHHH-------HhccCCCEEEECCCCCCCCCcchH
Q 027062 25 NPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRND--ELTVEE-------LKRKNPRGVLISPGPGAPQDSGIS 87 (229)
Q Consensus 25 ~~ilvid~~~~-----~~~~~~~~l~~~g~~~~v~~~~--~~~~~~-------l~~~~~dgiii~GG~~~~~~~~~~ 87 (229)
.|++||--... ....+.+.|+..|+++.++..- +.+.+. +.+.++|.||=.||. ++.|..+.
T Consensus 26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGG-SviD~aK~ 101 (357)
T cd08181 26 KRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFNADFVIGIGGG-SPLDAAKA 101 (357)
T ss_pred CEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCc-hHHHHHHH
Confidence 57777743222 2245777888889988776421 122222 233478999988874 44444443
No 441
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=37.43 E-value=2.2e+02 Score=24.89 Aligned_cols=65 Identities=17% Similarity=0.220 Sum_probs=36.4
Q ss_pred ceEEEE-ECC---CchhHHHHHHHHHcCCEEEEEeCCc--cCHHH-------HhccCCCEEEECCCCCCCCCcchHHHH
Q 027062 25 NPIIVI-DNY---DSFTYNLCQYMGELGYHFEVYRNDE--LTVEE-------LKRKNPRGVLISPGPGAPQDSGISLQT 90 (229)
Q Consensus 25 ~~ilvi-d~~---~~~~~~~~~~l~~~g~~~~v~~~~~--~~~~~-------l~~~~~dgiii~GG~~~~~~~~~~~~~ 90 (229)
.+++|| |.. ..+...+...|++.|+++.++...+ .+.+. +.+.++|.||=.|| |++.|..+.+..
T Consensus 27 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-Gs~iD~aK~ia~ 104 (376)
T cd08193 27 KRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARAAGADGVIGFGG-GSSMDVAKLVAV 104 (376)
T ss_pred CeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHHHHH
Confidence 567776 321 1133556777888898887664211 12222 23347899988887 445555544433
No 442
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=37.36 E-value=2.2e+02 Score=24.83 Aligned_cols=64 Identities=16% Similarity=0.235 Sum_probs=35.9
Q ss_pred ceEEEEECCCc----hhHHHHHHHHHcCCEEEEEeCC--ccCHHH-------HhccCCCEEEECCCCCCCCCcchHHH
Q 027062 25 NPIIVIDNYDS----FTYNLCQYMGELGYHFEVYRND--ELTVEE-------LKRKNPRGVLISPGPGAPQDSGISLQ 89 (229)
Q Consensus 25 ~~ilvid~~~~----~~~~~~~~l~~~g~~~~v~~~~--~~~~~~-------l~~~~~dgiii~GG~~~~~~~~~~~~ 89 (229)
.|++||-.... +...+.+.|++.|+++.++... +.+.+. +...++|.||=.|| |++.|..+.+.
T Consensus 24 ~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~~D~AKaia 100 (375)
T cd08194 24 KRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIALGG-GSPIDTAKAIA 100 (375)
T ss_pred CeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHHHH
Confidence 46777742222 3345777888889988776421 122222 22347899987766 34445444433
No 443
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=37.36 E-value=1.9e+02 Score=25.42 Aligned_cols=63 Identities=19% Similarity=0.221 Sum_probs=35.2
Q ss_pred ceEEEEECCC----chhHHHHHHHHHcCCEEEEEeCCc--cCHHH-------HhccCCCEEEECCCCCCCCCcchHH
Q 027062 25 NPIIVIDNYD----SFTYNLCQYMGELGYHFEVYRNDE--LTVEE-------LKRKNPRGVLISPGPGAPQDSGISL 88 (229)
Q Consensus 25 ~~ilvid~~~----~~~~~~~~~l~~~g~~~~v~~~~~--~~~~~-------l~~~~~dgiii~GG~~~~~~~~~~~ 88 (229)
.|++||-... .+...+.+.|++.|+++.++.... .+..+ ..+.++|.||=.|| |++.|..+.+
T Consensus 23 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~~~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~aK~i 98 (386)
T cd08191 23 SRALIVTDERMAGTPVFAELVQALAAAGVEVEVFDGVLPDLPRSELCDAASAAARAGPDVIIGLGG-GSCIDLAKIA 98 (386)
T ss_pred CeEEEEECcchhhcchHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHHH
Confidence 4666664222 233456677888899887764221 12221 22337899987776 3455554443
No 444
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=37.33 E-value=66 Score=23.75 Aligned_cols=38 Identities=8% Similarity=-0.094 Sum_probs=18.7
Q ss_pred CCCEEEECCCCCCCCCcc---hHHHHHHHhCCCCcEEEEeh
Q 027062 68 NPRGVLISPGPGAPQDSG---ISLQTVLELGPTVPLFGVCM 105 (229)
Q Consensus 68 ~~dgiii~GG~~~~~~~~---~~~~~i~~~~~~~PvlGIC~ 105 (229)
+||.||+.++-..-.... .+++.....-.++|+.-++-
T Consensus 43 ~yD~vi~gspiy~g~~~~~~~~fi~~~~~~l~~k~v~~f~~ 83 (143)
T PF12724_consen 43 DYDAVIFGSPIYAGRIPGEMREFIKKNKDNLKNKKVALFSV 83 (143)
T ss_pred cCCEEEEEEEEECCcCCHHHHHHHHHHHHHHcCCcEEEEEE
Confidence 679988755432222222 23443333334567655543
No 445
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=37.30 E-value=1.5e+02 Score=21.07 Aligned_cols=31 Identities=19% Similarity=0.330 Sum_probs=20.7
Q ss_pred eEEEEEC---CCchhHHHHHHHHHcCCEEEEEeC
Q 027062 26 PIIVIDN---YDSFTYNLCQYMGELGYHFEVYRN 56 (229)
Q Consensus 26 ~ilvid~---~~~~~~~~~~~l~~~g~~~~v~~~ 56 (229)
+|+||.. .+.+...+.+.|.+.|+++..+..
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp 35 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNP 35 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHTT-EEEEEST
T ss_pred EEEEEcccCCCCChHHHHHHHHHhCCCEEEEECC
Confidence 5777743 244667788888889988877754
No 446
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=37.22 E-value=3.2e+02 Score=24.81 Aligned_cols=32 Identities=13% Similarity=0.169 Sum_probs=24.4
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeC
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN 56 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~ 56 (229)
..+|+|+..+.+- .+++++|.+.|+++.....
T Consensus 7 ~~~i~v~G~G~sG-~s~a~~L~~~G~~v~~~D~ 38 (498)
T PRK02006 7 GPMVLVLGLGESG-LAMARWCARHGARLRVADT 38 (498)
T ss_pred CCEEEEEeecHhH-HHHHHHHHHCCCEEEEEcC
Confidence 3579999986544 3488999999999887664
No 447
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=37.21 E-value=1.6e+02 Score=23.64 Aligned_cols=39 Identities=13% Similarity=0.100 Sum_probs=23.2
Q ss_pred HHHHHHHHH-cCCEEEEEeCCc-cCHHHHhccCCCEEEECC
Q 027062 38 YNLCQYMGE-LGYHFEVYRNDE-LTVEELKRKNPRGVLISP 76 (229)
Q Consensus 38 ~~~~~~l~~-~g~~~~v~~~~~-~~~~~l~~~~~dgiii~G 76 (229)
..+.+++++ .|+.+.+...+. ...+.+...++||+|+.+
T Consensus 18 ~gi~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~vdGiI~~~ 58 (265)
T cd01543 18 RGIARYAREHGPWSIYLEPRGLQEPLRWLKDWQGDGIIARI 58 (265)
T ss_pred HHHHHHHHhcCCeEEEEecccchhhhhhccccccceEEEEC
Confidence 446677777 677776654321 112234444789999974
No 448
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=37.19 E-value=1.8e+02 Score=23.28 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=24.9
Q ss_pred HHHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCC
Q 027062 38 YNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (229)
Q Consensus 38 ~~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG 77 (229)
..+.+.+++.|+.+.+......+. +.+...++||||+.++
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~vdgii~~~~ 64 (273)
T cd06305 19 AGTKAEAEALGGDLRVYDAGGDDAKQADQIDQAIAQKVDAIIIQHG 64 (273)
T ss_pred HHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 346677888899988875431111 1122337999999764
No 449
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=37.02 E-value=1.4e+02 Score=23.39 Aligned_cols=40 Identities=23% Similarity=0.366 Sum_probs=23.2
Q ss_pred HHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCCC
Q 027062 39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGP 78 (229)
Q Consensus 39 ~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG~ 78 (229)
.+.+++++.|+++.+...+..+. +.+...++|++|+.+..
T Consensus 20 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iii~~~~ 65 (264)
T cd06267 20 GIEEAAREAGYSVLLCNSDEDPEKEREALELLLSRRVDGIILAPSR 65 (264)
T ss_pred HHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEecCC
Confidence 34555666788888776542111 11222368899887654
No 450
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=36.91 E-value=1.9e+02 Score=24.75 Aligned_cols=79 Identities=19% Similarity=0.249 Sum_probs=42.6
Q ss_pred CceEEEEECCCchhHHHHHHHHHc-CCEEEEEeCC-ccCHHHHhccCCCEEEECCCCCCCC-CcchHHHHHHHhCCCCcE
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYRND-ELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELGPTVPL 100 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~-g~~~~v~~~~-~~~~~~l~~~~~dgiii~GG~~~~~-~~~~~~~~i~~~~~~~Pv 100 (229)
+++|+|+|....+...+.+.|+.. ++++.....+ ......+....+|.+++-- ..+. +.-.+.+.+++... .|+
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~~~~DlVllD~--~mp~~dgle~l~~i~~~~~-~pi 79 (354)
T PRK00742 3 KIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKKLNPDVITLDV--EMPVMDGLDALEKIMRLRP-TPV 79 (354)
T ss_pred ccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhhhCCCEEEEeC--CCCCCChHHHHHHHHHhCC-CCE
Confidence 468999997555666777888765 6666533222 1112223334678776632 1122 22234455554433 787
Q ss_pred EEEeh
Q 027062 101 FGVCM 105 (229)
Q Consensus 101 lGIC~ 105 (229)
+-++-
T Consensus 80 Ivls~ 84 (354)
T PRK00742 80 VMVSS 84 (354)
T ss_pred EEEec
Confidence 77763
No 451
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=36.87 E-value=76 Score=28.61 Aligned_cols=18 Identities=17% Similarity=0.394 Sum_probs=14.4
Q ss_pred CCCcEEEEehhHHHHHHH
Q 027062 96 PTVPLFGVCMGLQCIGEA 113 (229)
Q Consensus 96 ~~~PvlGIC~G~Qlla~a 113 (229)
.+..++|+|.|.+.+...
T Consensus 158 ~~~kviGlC~~~~~~~~~ 175 (437)
T cd05298 158 PNARILNICDMPIAIMDS 175 (437)
T ss_pred CCCCEEEECCcHHHHHHH
Confidence 457899999999887654
No 452
>KOG1116 consensus Sphingosine kinase, involved in sphingolipid metabolism [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=36.72 E-value=60 Score=30.20 Aligned_cols=44 Identities=23% Similarity=0.344 Sum_probs=27.4
Q ss_pred HHHHHHHcCCEEEEEeCCc--cC---HHHHhccCCCEEEECCCCCCCCC
Q 027062 40 LCQYMGELGYHFEVYRNDE--LT---VEELKRKNPRGVLISPGPGAPQD 83 (229)
Q Consensus 40 ~~~~l~~~g~~~~v~~~~~--~~---~~~l~~~~~dgiii~GG~~~~~~ 83 (229)
..-.+.++++.++++...- .. ..+++-.+|||||..||.|-+++
T Consensus 203 v~Pll~~A~i~~evv~T~~~~HArei~rt~dl~kyDgIv~vsGDGl~hE 251 (579)
T KOG1116|consen 203 VEPLLSEAGISFEVVLTTRPNHAREIVRTLDLGKYDGIVCVSGDGLLHE 251 (579)
T ss_pred hhhhhhhcCceEEEEEecCccHHHHHHHhhhccccceEEEecCCcCHHH
Confidence 3344567888888775321 11 12233337899999999987654
No 453
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=36.42 E-value=2.3e+02 Score=24.95 Aligned_cols=63 Identities=17% Similarity=0.268 Sum_probs=35.2
Q ss_pred ceEEEEECC----CchhHHHHHHHHHcCCEEEEEeCC--ccCHHH-------HhccCCCEEEECCCCCCCCCcchHH
Q 027062 25 NPIIVIDNY----DSFTYNLCQYMGELGYHFEVYRND--ELTVEE-------LKRKNPRGVLISPGPGAPQDSGISL 88 (229)
Q Consensus 25 ~~ilvid~~----~~~~~~~~~~l~~~g~~~~v~~~~--~~~~~~-------l~~~~~dgiii~GG~~~~~~~~~~~ 88 (229)
.+++|+--. .+....+.+.|++.|+.+.++... +.+.+. ..+.++|.||=.||. ++-|..+.+
T Consensus 32 ~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~IiaiGGG-S~iD~AK~i 107 (383)
T PRK09860 32 TRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGGG-SPHDCAKGI 107 (383)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCCc-hHHHHHHHH
Confidence 577777422 113346778888889887666421 122222 223478999966663 444444443
No 454
>PLN02735 carbamoyl-phosphate synthase
Probab=36.41 E-value=1.3e+02 Score=30.64 Aligned_cols=35 Identities=14% Similarity=0.320 Sum_probs=25.6
Q ss_pred CCceEEEEECCCch----------hHHHHHHHHHcCCEEEEEeCC
Q 027062 23 NKNPIIVIDNYDSF----------TYNLCQYMGELGYHFEVYRND 57 (229)
Q Consensus 23 ~~~~ilvid~~~~~----------~~~~~~~l~~~g~~~~v~~~~ 57 (229)
..+|||||..+... ...+.++|++.|+++..+..+
T Consensus 22 ~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~~Vi~vd~n 66 (1102)
T PLN02735 22 DLKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVVLINSN 66 (1102)
T ss_pred CCCEEEEECCCccccccceeecchHHHHHHHHHHcCCEEEEEeCC
Confidence 35689999875421 124789999999999988754
No 455
>PLN02204 diacylglycerol kinase
Probab=36.23 E-value=88 Score=29.42 Aligned_cols=62 Identities=11% Similarity=0.078 Sum_probs=35.7
Q ss_pred CCCceEEEEECC-Cch------hHHHHHHHHHcCCEEEEEeCCcc-CHHH----Hh---ccCCCEEEECCCCCCCCC
Q 027062 22 NNKNPIIVIDNY-DSF------TYNLCQYMGELGYHFEVYRNDEL-TVEE----LK---RKNPRGVLISPGPGAPQD 83 (229)
Q Consensus 22 ~~~~~ilvid~~-~~~------~~~~~~~l~~~g~~~~v~~~~~~-~~~~----l~---~~~~dgiii~GG~~~~~~ 83 (229)
...++++||=|. ++- -..+...|+.+++++.++..... ...+ +. ..+||+||..||-|.+++
T Consensus 157 ~r~k~llVivNP~sGkg~~~~~~~~V~p~f~~a~i~~~v~~T~~aghA~d~~~~~~~~~l~~~D~VVaVGGDGt~nE 233 (601)
T PLN02204 157 GRPKNLLVFVHPLSGKGSGSRTWETVSPIFIRAKVKTKVIVTERAGHAFDVMASISNKELKSYDGVIAVGGDGFFNE 233 (601)
T ss_pred CCCceEEEEECCCCCCcchHHHHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhhhccCCCEEEEEcCccHHHH
Confidence 334566666442 221 12466778889998776643211 1111 11 236899999999886543
No 456
>PRK06444 prephenate dehydrogenase; Provisional
Probab=35.96 E-value=1.2e+02 Score=24.06 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=24.0
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEE
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFE 52 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~ 52 (229)
|+|.||.-.+..-..+.+.+++.|+.+.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~ 28 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY 28 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE
Confidence 5899999767778889999999999986
No 457
>PLN02256 arogenate dehydrogenase
Probab=35.72 E-value=2e+02 Score=24.47 Aligned_cols=35 Identities=17% Similarity=0.102 Sum_probs=26.7
Q ss_pred cCCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeC
Q 027062 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN 56 (229)
Q Consensus 21 ~~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~ 56 (229)
...+++|.||.. +..-..+.+.|.+.|.++..+..
T Consensus 33 ~~~~~kI~IIG~-G~mG~slA~~L~~~G~~V~~~d~ 67 (304)
T PLN02256 33 KSRKLKIGIVGF-GNFGQFLAKTFVKQGHTVLATSR 67 (304)
T ss_pred cCCCCEEEEEee-CHHHHHHHHHHHhCCCEEEEEEC
Confidence 446688999995 45667888999888988776653
No 458
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=35.71 E-value=1.2e+02 Score=26.17 Aligned_cols=82 Identities=11% Similarity=0.103 Sum_probs=45.7
Q ss_pred ccCCCceEEEEECCCchhHH--HHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCC-------CcchHHHH
Q 027062 20 SKNNKNPIIVIDNYDSFTYN--LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-------DSGISLQT 90 (229)
Q Consensus 20 ~~~~~~~ilvid~~~~~~~~--~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~-------~~~~~~~~ 90 (229)
..++.-+|.|.+......+. .++.|.+.|+++.++... .-..-+...++|.+++ | ...+. ..+.+.-.
T Consensus 176 ~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Ds-av~~~m~~~~vd~Viv-G-Ad~v~~nG~v~nkiGT~~lA 252 (331)
T TIGR00512 176 EKGRLEHVYADETRPRLQGARLTAWELVQEGIPATLITDS-MAAHLMKHGEVDAVIV-G-ADRIAANGDTANKIGTYQLA 252 (331)
T ss_pred HcCCceEEEECCCCchhhHHHHHHHHHHHCCCCEEEEccc-HHHHHhcccCCCEEEE-c-ccEEecCCCEeehhhHHHHH
Confidence 34455667777765555543 467789999999988732 1111222225677765 3 22222 22334344
Q ss_pred HHHhCCCCcEEEEe
Q 027062 91 VLELGPTVPLFGVC 104 (229)
Q Consensus 91 i~~~~~~~PvlGIC 104 (229)
+.+...++|++-.|
T Consensus 253 ~~Ak~~~vPfyV~a 266 (331)
T TIGR00512 253 VLAKHHGVPFYVAA 266 (331)
T ss_pred HHHHHhCCCEEEec
Confidence 44445679998876
No 459
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=35.51 E-value=1.4e+02 Score=22.83 Aligned_cols=56 Identities=13% Similarity=0.196 Sum_probs=34.2
Q ss_pred cCCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCC
Q 027062 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77 (229)
Q Consensus 21 ~~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG 77 (229)
.-..++++||......-..+...|.+.|+.+.+.+......++.-. +-|.||..-|
T Consensus 33 ~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~~~~-~ADIVVsa~G 88 (160)
T PF02882_consen 33 DLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQEITR-RADIVVSAVG 88 (160)
T ss_dssp STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHHHHT-TSSEEEE-SS
T ss_pred CCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCcccceee-eccEEeeeec
Confidence 3456789999864445567888999999999999876444444332 3477666544
No 460
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=35.45 E-value=80 Score=30.79 Aligned_cols=80 Identities=15% Similarity=0.188 Sum_probs=49.2
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHh--CCCCc
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTVP 99 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~-~~~~~i~~~--~~~~P 99 (229)
..++|+|+|........+.+.|+..|..+..........+.+....||.|++=- ..+...+ ...+.+++. ....|
T Consensus 666 ~~~~vLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~~~~~~~dlil~D~--~mp~~~g~~~~~~lr~~~~~~~~p 743 (919)
T PRK11107 666 LPLTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQAKQRPFDLILMDI--QMPGMDGIRACELIRQLPHNQNTP 743 (919)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCCCCEEEEeC--CCCCCcHHHHHHHHHhcccCCCCC
Confidence 357899999755566678888999998887665332222334444688877632 2222222 345666653 35689
Q ss_pred EEEEe
Q 027062 100 LFGVC 104 (229)
Q Consensus 100 vlGIC 104 (229)
++.+-
T Consensus 744 ii~lt 748 (919)
T PRK11107 744 IIAVT 748 (919)
T ss_pred EEEEe
Confidence 98874
No 461
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=35.32 E-value=1.9e+02 Score=23.52 Aligned_cols=30 Identities=10% Similarity=0.130 Sum_probs=18.7
Q ss_pred CCCceEEEEECCCchhHHHHHHHHHcCCEE
Q 027062 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHF 51 (229)
Q Consensus 22 ~~~~~ilvid~~~~~~~~~~~~l~~~g~~~ 51 (229)
..+.+||+|.....+...+.++.+..|...
T Consensus 60 ~~~g~iLfV~tk~~~~~~v~~~a~~~~~~y 89 (225)
T TIGR01011 60 ANGGKILFVGTKKQAKEIIKEEAERCGMFY 89 (225)
T ss_pred hCCCEEEEEeCCHHHHHHHHHHHHHhCCcc
Confidence 346678888875445555666666666544
No 462
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=35.12 E-value=2.1e+02 Score=22.72 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=25.3
Q ss_pred HHHHHHHHHcCCEEEEEeCCccCHH------HHhccCCCEEEECCC
Q 027062 38 YNLCQYMGELGYHFEVYRNDELTVE------ELKRKNPRGVLISPG 77 (229)
Q Consensus 38 ~~~~~~l~~~g~~~~v~~~~~~~~~------~l~~~~~dgiii~GG 77 (229)
..+.+++++.|+++.+...+..+.. .+...++||||+.+.
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (269)
T cd06275 19 RGVEQYCYRQGYNLILCNTEGDPERQRSYLRMLAQKRVDGLLVMCS 64 (269)
T ss_pred HHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecC
Confidence 3456667778999887764322211 233347899999874
No 463
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=34.95 E-value=1.6e+02 Score=23.40 Aligned_cols=39 Identities=15% Similarity=0.159 Sum_probs=24.9
Q ss_pred HHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCC
Q 027062 39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (229)
Q Consensus 39 ~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG 77 (229)
.+.+.+++.|+.+.+...+.... +.+...++||+|+.+.
T Consensus 20 gi~~~~~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (265)
T cd06290 20 GMERGLNGSGYSPIIATGHWNQSRELEALELLKSRRVDALILLGG 64 (265)
T ss_pred HHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 35567778899988876542211 1233347999999864
No 464
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=34.82 E-value=1.7e+02 Score=23.97 Aligned_cols=38 Identities=21% Similarity=0.397 Sum_probs=23.8
Q ss_pred HHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECC
Q 027062 39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISP 76 (229)
Q Consensus 39 ~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~G 76 (229)
.+.+.+++.|+.+.+......+. +.+...++||+|+.+
T Consensus 47 ~i~~~~~~~G~~~~~~~~~~d~~~~~~~~~~l~~~~~dgiii~~ 90 (295)
T PRK10653 47 GAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINP 90 (295)
T ss_pred HHHHHHHHcCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 45677788899998765431111 112233789999865
No 465
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=34.79 E-value=43 Score=28.83 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=15.7
Q ss_pred ceEEEEeCCCCcEEEEeccCCCC
Q 027062 181 LIMAARHKKYKHLQGVQFHPESI 203 (229)
Q Consensus 181 ~i~a~~~~~~~~i~g~QfHPE~~ 203 (229)
...-|+... | +|+.||||-..
T Consensus 99 ~l~rirf~s-p-v~~~q~hp~k~ 119 (405)
T KOG1273|consen 99 PLKRIRFDS-P-VWGAQWHPRKR 119 (405)
T ss_pred ceeEEEccC-c-cceeeeccccC
Confidence 455666665 5 99999999764
No 466
>PRK00153 hypothetical protein; Validated
Probab=34.68 E-value=1.5e+02 Score=20.82 Aligned_cols=45 Identities=20% Similarity=0.372 Sum_probs=33.1
Q ss_pred CeEEEEEcCCCceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHH
Q 027062 170 ALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI 216 (229)
Q Consensus 170 ~~~~la~~~~~~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~ 216 (229)
...+.+++.++.|...-..++. +..+.+.|+.. .+.....+...+
T Consensus 28 ~~~~~~~s~~G~V~V~v~G~~~-v~~i~Id~~ll-~~~d~e~LedlI 72 (104)
T PRK00153 28 QMEVEGEAGGGLVKVTMTGKKE-VKRVKIDPSLV-DPEDVEMLEDLI 72 (104)
T ss_pred ccEEEEEECCCeEEEEEecCce-EEEEEECHHHc-CCcCHHHHHHHH
Confidence 4567888889999998888876 99999999986 233344444443
No 467
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=34.59 E-value=3.3e+02 Score=24.14 Aligned_cols=31 Identities=16% Similarity=0.290 Sum_probs=21.8
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEe
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYR 55 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~ 55 (229)
.++|+|+..+. .-.+.++.|.+.|+++.+..
T Consensus 5 ~k~v~v~G~g~-~G~s~a~~l~~~G~~V~~~d 35 (447)
T PRK02472 5 NKKVLVLGLAK-SGYAAAKLLHKLGANVTVND 35 (447)
T ss_pred CCEEEEEeeCH-HHHHHHHHHHHCCCEEEEEc
Confidence 45688888643 44456788888888887765
No 468
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=34.59 E-value=2.1e+02 Score=21.85 Aligned_cols=71 Identities=17% Similarity=0.154 Sum_probs=38.1
Q ss_pred ECCCchhHHHHHHHHH-cCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhC-CCCcEEEEeh
Q 027062 31 DNYDSFTYNLCQYMGE-LGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELG-PTVPLFGVCM 105 (229)
Q Consensus 31 d~~~~~~~~~~~~l~~-~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~-~~~PvlGIC~ 105 (229)
....+.+..+++++.+ ++. ..++...+.+ +.+. +||-|+|..+...-.-+....+.+..+. .++=+||+|-
T Consensus 5 sS~TGNTkkvA~aI~~~l~~-~~~~~~~~~~-~~~~--~yD~i~lG~w~d~G~~d~~~~~fl~~l~~KkV~lF~T~G 77 (160)
T PF12641_consen 5 SSRTGNTKKVAEAIAEALGA-KDIVSVEEPP-EDLE--DYDLIFLGFWIDKGTPDKDMKEFLKKLKGKKVALFGTAG 77 (160)
T ss_pred ECCCChHHHHHHHHHHHCCC-ceeEeccccc-cCCC--CCCEEEEEcCccCCCCCHHHHHHHHHccCCeEEEEEecC
Confidence 4445567778877754 455 3444433222 1233 6688877555333223334445555553 5567788873
No 469
>PLN02979 glycolate oxidase
Probab=34.57 E-value=3.2e+02 Score=24.06 Aligned_cols=84 Identities=20% Similarity=0.231 Sum_probs=51.5
Q ss_pred hHHHHHHHHH-cCCEEEEEeCCccCHH---HHhccCCCEEEECCCCCCCCCcch----HHHHHHH-hCCCCcEE---EEe
Q 027062 37 TYNLCQYMGE-LGYHFEVYRNDELTVE---ELKRKNPRGVLISPGPGAPQDSGI----SLQTVLE-LGPTVPLF---GVC 104 (229)
Q Consensus 37 ~~~~~~~l~~-~g~~~~v~~~~~~~~~---~l~~~~~dgiii~GG~~~~~~~~~----~~~~i~~-~~~~~Pvl---GIC 104 (229)
+..-.+||++ .+..+.+... .+.+ .+.+..+|+|+++|..+.-.+... .+..+.+ ...++||+ ||.
T Consensus 211 tW~dl~wlr~~~~~PvivKgV--~~~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi~dGGIr 288 (366)
T PLN02979 211 SWKDVQWLQTITKLPILVKGV--LTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVR 288 (366)
T ss_pred CHHHHHHHHhccCCCEEeecC--CCHHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcC
Confidence 3344677775 3555554443 2233 334458999999997665444332 2333433 45668887 899
Q ss_pred hhHHHH-HHHhCCeeeecC
Q 027062 105 MGLQCI-GEAFGGKIVRSP 122 (229)
Q Consensus 105 ~G~Qll-a~alGg~v~~~~ 122 (229)
.|..++ +.++|++..-..
T Consensus 289 ~G~Di~KALALGAdaV~iG 307 (366)
T PLN02979 289 RGTDVFKALALGASGIFIG 307 (366)
T ss_pred cHHHHHHHHHcCCCEEEEc
Confidence 999887 568898766543
No 470
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=34.56 E-value=1.8e+02 Score=28.42 Aligned_cols=79 Identities=14% Similarity=0.199 Sum_probs=46.3
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhc-cCCCEEEECCCCCCCCCcc-hHHHHHHHhCCCCcE
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPL 100 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~-~~~dgiii~GG~~~~~~~~-~~~~~i~~~~~~~Pv 100 (229)
...+|+|+|........+...|+..|+++..........+.+.. ..||.|++-= ..+..++ ...+.+++.....|+
T Consensus 680 ~~~~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~~Dlvl~D~--~mp~~~G~~~~~~lr~~~~~~~i 757 (914)
T PRK11466 680 DGLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDF--DLPDYDGITLARQLAQQYPSLVL 757 (914)
T ss_pred CCcceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHHHHHcCCCCCEEEEeC--CCCCCCHHHHHHHHHhhCCCCCE
Confidence 35689999975556667888888999988765432111222322 2467777621 1222222 345566665566888
Q ss_pred EEE
Q 027062 101 FGV 103 (229)
Q Consensus 101 lGI 103 (229)
+.+
T Consensus 758 i~~ 760 (914)
T PRK11466 758 IGF 760 (914)
T ss_pred EEE
Confidence 765
No 471
>CHL00067 rps2 ribosomal protein S2
Probab=34.48 E-value=2.1e+02 Score=23.31 Aligned_cols=29 Identities=3% Similarity=0.031 Sum_probs=16.4
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEE
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHF 51 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~ 51 (229)
...+|++|.........+.+..+..|...
T Consensus 67 ~~g~ILfV~t~~~~~~~v~~~a~~~~~~y 95 (230)
T CHL00067 67 KGKKFLFVGTKKQAADLVASAAIRARCHY 95 (230)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHhCCcC
Confidence 45578888765444444555555555433
No 472
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=34.41 E-value=1.5e+02 Score=25.59 Aligned_cols=82 Identities=10% Similarity=0.097 Sum_probs=45.9
Q ss_pred ccCCCceEEEEECCCchhH-H-HHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCC-------cchHHHH
Q 027062 20 SKNNKNPIIVIDNYDSFTY-N-LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD-------SGISLQT 90 (229)
Q Consensus 20 ~~~~~~~ilvid~~~~~~~-~-~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~-------~~~~~~~ 90 (229)
.++++-+|.+.+......+ . .+..|.+.|+++.++... .-..-+...++|.+|+ | ...+.. .+.+.-.
T Consensus 166 ~~gk~f~V~v~EsRP~~qG~rlta~eL~~~GI~vtlI~Ds-a~~~~M~~~~Vd~Viv-G-Ad~I~aNG~v~NKiGT~~lA 242 (329)
T PRK06371 166 RNGKNIFVFVDETRPRLQGARLTAWELAQEGIDHAIIADN-AAGYFMRKKEIDLVIV-G-ADRIASNGDFANKIGTYEKA 242 (329)
T ss_pred HcCCeeEEEECCCCCcchHHHHHHHHHHHCCCCEEEEccc-HHHHHhhhcCCCEEEE-C-ccEEecCCCEeehhhHHHHH
Confidence 3444556666555444444 2 467789999999988632 1111222224677765 3 232222 2334444
Q ss_pred HHHhCCCCcEEEEe
Q 027062 91 VLELGPTVPLFGVC 104 (229)
Q Consensus 91 i~~~~~~~PvlGIC 104 (229)
+.+...++|++-.|
T Consensus 243 l~Ak~~~VPfyV~a 256 (329)
T PRK06371 243 VLAKVNGIPFYVAA 256 (329)
T ss_pred HHHHHcCCCEEEec
Confidence 44555679999887
No 473
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=34.40 E-value=2.5e+02 Score=22.67 Aligned_cols=115 Identities=15% Similarity=0.100 Sum_probs=60.8
Q ss_pred CchhHHHHHHHHHcCCEEEEEeCCc----cCHHHHhccCCCEEEECCCCC-CCCCcchHHHHHHHhCCCCcEEEEehhHH
Q 027062 34 DSFTYNLCQYMGELGYHFEVYRNDE----LTVEELKRKNPRGVLISPGPG-APQDSGISLQTVLELGPTVPLFGVCMGLQ 108 (229)
Q Consensus 34 ~~~~~~~~~~l~~~g~~~~v~~~~~----~~~~~l~~~~~dgiii~GG~~-~~~~~~~~~~~i~~~~~~~PvlGIC~G~Q 108 (229)
++....+...|++.|+++.+...++ .+.+.|. ++|.||+.+-.+ ..-.+....+......++.=++|+=-|+-
T Consensus 22 ~~~~~~~~~~L~~~gf~V~~~~~~d~~~~~~~~~L~--~~D~lV~~~~~~~~~l~~eq~~~l~~~V~~GgGlv~lHsg~~ 99 (215)
T cd03142 22 DGMHGTIAAALAEYGFDVQTATLDEPEHGLTEEVLA--ETDVLLWWGHIAHDEVKDEIVERVHRRVLDGMGLIVLHSGHY 99 (215)
T ss_pred chHHHHHHHHHHhcCcEEEEEeccCccccCCHhHHh--cCCEEEEeCCCCcCcCCHHHHHHHHHHHHcCCCEEEECCCcC
Confidence 4456778999999999998665543 2233455 679999844332 21122222222333455666777665552
Q ss_pred --HHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCceee
Q 027062 109 --CIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTA 153 (229)
Q Consensus 109 --lla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~ 153 (229)
-....+||...... ...+....+.+. ..++|+.++++..+..
T Consensus 100 s~~y~~lvGg~f~~~~--h~~~~~~~v~v~-~p~HPIt~Gl~~~f~~ 143 (215)
T cd03142 100 SKIFKKLMGTTCTLKW--REAGERERVWVV-EPGHPITDGIPEYIEL 143 (215)
T ss_pred CHHHHHhhCCccccee--cCCCceeEEEEe-cCCCchhcCCCCcccc
Confidence 11223666531110 012222223333 3478999999876544
No 474
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=34.36 E-value=2e+02 Score=22.86 Aligned_cols=64 Identities=19% Similarity=0.236 Sum_probs=35.4
Q ss_pred HHHHHHHHcCCEEEEE-eCCccCHH------HHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEEEehh
Q 027062 39 NLCQYMGELGYHFEVY-RNDELTVE------ELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMG 106 (229)
Q Consensus 39 ~~~~~l~~~g~~~~v~-~~~~~~~~------~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlGIC~G 106 (229)
.+.+++++.|.++.++ ........ .+-..++||||+.+... ......++.+.+ .++||+.+=.+
T Consensus 19 g~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~--~~~~~~l~~~~~--~gIpvv~~d~~ 89 (257)
T PF13407_consen 19 GAKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVSPVDP--DSLAPFLEKAKA--AGIPVVTVDSD 89 (257)
T ss_dssp HHHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHHTTESEEEEESSST--TTTHHHHHHHHH--TTSEEEEESST
T ss_pred HHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEecCCCH--HHHHHHHHHHhh--cCceEEEEecc
Confidence 3566777889999985 54321111 12233799999976432 222233344333 35777775433
No 475
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=34.33 E-value=95 Score=28.09 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=35.6
Q ss_pred cCCCceEEEEECCCch----hHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCC
Q 027062 21 KNNKNPIIVIDNYDSF----TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77 (229)
Q Consensus 21 ~~~~~~ilvid~~~~~----~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG 77 (229)
...+.+|+|+|+.+.- ...+.+.+++.|+++++.+.. +|... ||.+..||
T Consensus 182 ~~~~P~IAIvDf~~~~~~~Ef~~f~~~f~~~G~~~vI~d~~-----~L~y~--~g~L~~~~ 235 (445)
T PF14403_consen 182 RVEKPNIAIVDFLEYPTLSEFEVFQRLFEEHGYDCVICDPR-----DLEYR--DGRLYAGG 235 (445)
T ss_pred cCCCCcEEEEecccCCccchHHHHHHHHHHcCCceEecChH-----Hceec--CCEEEECC
Confidence 3447899999986532 356889999999999988743 44432 66666666
No 476
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=34.02 E-value=1.5e+02 Score=25.76 Aligned_cols=81 Identities=10% Similarity=0.070 Sum_probs=46.4
Q ss_pred ccCCCceEEEEECCCchhHH--HHHHHHHcCCEEEEEeCCccCHHHH-hccCCCEEEECCCCCCCCC-------cchHHH
Q 027062 20 SKNNKNPIIVIDNYDSFTYN--LCQYMGELGYHFEVYRNDELTVEEL-KRKNPRGVLISPGPGAPQD-------SGISLQ 89 (229)
Q Consensus 20 ~~~~~~~ilvid~~~~~~~~--~~~~l~~~g~~~~v~~~~~~~~~~l-~~~~~dgiii~GG~~~~~~-------~~~~~~ 89 (229)
..+++-+|.|.+....+.+. .+..|.+.|+++.++... ....+ ...++|.+|+ | ...+.. .+-+.-
T Consensus 176 ~~gk~~~V~v~EsRP~~qG~~lta~eL~~~GI~vtlI~Ds--a~~~~M~~~~vd~Viv-G-Ad~I~~nG~v~NkiGT~~l 251 (344)
T PRK05720 176 EKGIDIHVYADETRPRLQGARLTAWELYQAGIDVTVITDN--MAAHLMQTGKIDAVIV-G-ADRIAANGDVANKIGTYQL 251 (344)
T ss_pred HcCCceEEEEcCCCChhhhHHHHHHHHHHCCCCEEEEccc--HHHHHhcccCCCEEEE-c-ccEEecCCCEeehhhHHHH
Confidence 34555667777765555543 467789999999988632 12222 2224677775 3 233322 233344
Q ss_pred HHHHhCCCCcEEEEe
Q 027062 90 TVLELGPTVPLFGVC 104 (229)
Q Consensus 90 ~i~~~~~~~PvlGIC 104 (229)
.+.+...++|++-.|
T Consensus 252 Al~Ak~~~vPfyV~a 266 (344)
T PRK05720 252 AIAAKYHGVPFYVAA 266 (344)
T ss_pred HHHHHHhCCCEEEec
Confidence 444445679988766
No 477
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=33.99 E-value=2.7e+02 Score=24.41 Aligned_cols=61 Identities=16% Similarity=0.311 Sum_probs=34.0
Q ss_pred ceEEEEECCCc----hhHHHHHHHHHcCCEEEEEeCCc--cCHHH-------HhccCCCEEEECCCCCCCCCcch
Q 027062 25 NPIIVIDNYDS----FTYNLCQYMGELGYHFEVYRNDE--LTVEE-------LKRKNPRGVLISPGPGAPQDSGI 86 (229)
Q Consensus 25 ~~ilvid~~~~----~~~~~~~~l~~~g~~~~v~~~~~--~~~~~-------l~~~~~dgiii~GG~~~~~~~~~ 86 (229)
.+++||--..- +...+...|++.|+++.++...+ .+.+. +.+.++|.||=.||. ++-|..+
T Consensus 31 ~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGG-S~iD~aK 104 (382)
T PRK10624 31 KKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKASGADYLIAIGGG-SPQDTCK 104 (382)
T ss_pred CEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCh-HHHHHHH
Confidence 57777742211 33456778888899887764211 12222 223479999966653 3444443
No 478
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=33.57 E-value=2.7e+02 Score=24.34 Aligned_cols=82 Identities=21% Similarity=0.256 Sum_probs=48.4
Q ss_pred HHHHHHHHcCCEEEEEeCCccCHHH---HhccCCCEEEECCCCCCCCCcc----hHHHHHHH-hCCCCcEE---EEehhH
Q 027062 39 NLCQYMGELGYHFEVYRNDELTVEE---LKRKNPRGVLISPGPGAPQDSG----ISLQTVLE-LGPTVPLF---GVCMGL 107 (229)
Q Consensus 39 ~~~~~l~~~g~~~~v~~~~~~~~~~---l~~~~~dgiii~GG~~~~~~~~----~~~~~i~~-~~~~~Pvl---GIC~G~ 107 (229)
.+....+..+..+.+... .+.++ +.+..+|+|+++|-.|.-.|.+ ..+..+++ ...++||+ ||..|.
T Consensus 216 ~i~~~~~~~~~pvivKgv--~~~~da~~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i~~dgGir~g~ 293 (356)
T PF01070_consen 216 DIEWIRKQWKLPVIVKGV--LSPEDAKRAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAVGDDIPIIADGGIRRGL 293 (356)
T ss_dssp HHHHHHHHCSSEEEEEEE---SHHHHHHHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHHTTSSEEEEESS--SHH
T ss_pred HHHHHhcccCCceEEEec--ccHHHHHHHHhcCCCEEEecCCCcccCccccccccccHHHHhhhcCCeeEEEeCCCCCHH
Confidence 344444557888876654 33343 3445799999996544433332 12445554 56689998 799999
Q ss_pred HHH-HHHhCCeeeecC
Q 027062 108 QCI-GEAFGGKIVRSP 122 (229)
Q Consensus 108 Qll-a~alGg~v~~~~ 122 (229)
-++ +.+||++.....
T Consensus 294 Dv~kalaLGA~~v~ig 309 (356)
T PF01070_consen 294 DVAKALALGADAVGIG 309 (356)
T ss_dssp HHHHHHHTT-SEEEES
T ss_pred HHHHHHHcCCCeEEEc
Confidence 766 678999877654
No 479
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=33.51 E-value=56 Score=26.39 Aligned_cols=38 Identities=26% Similarity=0.538 Sum_probs=26.8
Q ss_pred CCCEEEECCCCCCCCCc--chHHHHHHHhCCCCcEEEEeh
Q 027062 68 NPRGVLISPGPGAPQDS--GISLQTVLELGPTVPLFGVCM 105 (229)
Q Consensus 68 ~~dgiii~GG~~~~~~~--~~~~~~i~~~~~~~PvlGIC~ 105 (229)
+.|.|.++=|||+..-- +.....-..+..++|++|||-
T Consensus 58 dld~iav~~GPGSFTGlRIG~~~AkgLA~~l~iplvgvss 97 (220)
T COG1214 58 DLDAIAVAKGPGSFTGLRIGVAFAKGLALALNIPLVGVSS 97 (220)
T ss_pred HCCEEEEccCCCcccchhhHHHHHHHHHHHcCCCEEEeCH
Confidence 56899999999987643 222222245566799999984
No 480
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=33.48 E-value=1.7e+02 Score=20.56 Aligned_cols=50 Identities=14% Similarity=0.003 Sum_probs=25.1
Q ss_pred ceEEEEECCCchhH----HHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEEC
Q 027062 25 NPIIVIDNYDSFTY----NLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLIS 75 (229)
Q Consensus 25 ~~ilvid~~~~~~~----~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~ 75 (229)
.+|+++=..+--+. .+....++.|+++++-... .........++|.++++
T Consensus 4 kkIllvC~~G~sTSll~~km~~~~~~~gi~~~V~A~~-~~~~~~~~~~~DviLl~ 57 (106)
T PRK10499 4 KHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEAFP-ETLAGEKGQNADVVLLG 57 (106)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHCCCCEEEEEee-cchhhccccCCCEEEEC
Confidence 46777733222222 3444556788888776532 11111122267877764
No 481
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=33.34 E-value=1.3e+02 Score=24.68 Aligned_cols=54 Identities=20% Similarity=0.190 Sum_probs=31.6
Q ss_pred CceEEEEE--CCCchh----HHHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCC
Q 027062 24 KNPIIVID--NYDSFT----YNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (229)
Q Consensus 24 ~~~ilvid--~~~~~~----~~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG 77 (229)
...|.+|- ..+.|. ..+.+++++.|+.+.+...+.... +.+...++|||||.+.
T Consensus 35 ~~~ig~v~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~ 100 (309)
T PRK11041 35 SRTILVIVPDICDPFFSEIIRGIEVTAAEHGYLVLIGDCAHQNQQEKTFVNLIITKQIDGMLLLGS 100 (309)
T ss_pred CcEEEEEeCCCcCccHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecC
Confidence 34666553 222333 336677778899988776532111 1233447999999864
No 482
>PRK04148 hypothetical protein; Provisional
Probab=33.34 E-value=1.3e+02 Score=22.29 Aligned_cols=40 Identities=20% Similarity=0.330 Sum_probs=28.4
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHH
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEEL 64 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l 64 (229)
..++|++|..+ +-..++..|.+.|.++..+..++...+..
T Consensus 16 ~~~kileIG~G--fG~~vA~~L~~~G~~ViaIDi~~~aV~~a 55 (134)
T PRK04148 16 KNKKIVELGIG--FYFKVAKKLKESGFDVIVIDINEKAVEKA 55 (134)
T ss_pred cCCEEEEEEec--CCHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 44789999985 44457778889999999888764333333
No 483
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=33.12 E-value=1.1e+02 Score=27.66 Aligned_cols=95 Identities=17% Similarity=0.213 Sum_probs=54.1
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcch-HHHHHHHh--CCCCc
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI-SLQTVLEL--GPTVP 99 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~-~~~~i~~~--~~~~P 99 (229)
...+|+|+|-.......+.+.|...|+++............+.+..||-|++.= ..+.-++. .-..++.. .+.+|
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e~~~dlil~d~--~mp~~dg~el~~~lr~~~~t~~ip 208 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAELPPDLVLLDA--NMPDMDGLELCTRLRQLERTRDIP 208 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHhcCCCcEEEEec--CCCccCHHHHHHHHhccccccccc
Confidence 567899999755566778999999998887765432222334444678777743 22222222 22333332 35678
Q ss_pred EEEEeh----hHHHHHHHhCCeee
Q 027062 100 LFGVCM----GLQCIGEAFGGKIV 119 (229)
Q Consensus 100 vlGIC~----G~Qlla~alGg~v~ 119 (229)
++.+-- ..+.-+...|+.-+
T Consensus 209 ii~~~~~~d~~~~~~Af~~G~~Dy 232 (435)
T COG3706 209 IILLSSKDDDELVVRAFELGVNDY 232 (435)
T ss_pred EEEEecccchHHHHHHHHcCCcce
Confidence 777753 23333444555433
No 484
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=33.05 E-value=1.1e+02 Score=24.87 Aligned_cols=39 Identities=13% Similarity=0.081 Sum_probs=25.0
Q ss_pred HHHHHHHHHcCCEEEEEeCCccCHHH------HhccCCCEEEECCC
Q 027062 38 YNLCQYMGELGYHFEVYRNDELTVEE------LKRKNPRGVLISPG 77 (229)
Q Consensus 38 ~~~~~~l~~~g~~~~v~~~~~~~~~~------l~~~~~dgiii~GG 77 (229)
..+.+.+++.|+++.+...++ +... +...++||||+.+.
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~-~~~~~~~i~~~~~~~~dgiii~~~ 63 (289)
T cd01540 19 KFAKKAAKEKGFTVVKIDVPD-GEKVLSAIDNLGAQGAKGFVICVP 63 (289)
T ss_pred HHHHHHHHHcCCEEEEccCCC-HHHHHHHHHHHHHcCCCEEEEccC
Confidence 345677888999988775531 1111 22347899999863
No 485
>PLN00158 histone H2B; Provisional
Probab=32.93 E-value=41 Score=24.32 Aligned_cols=27 Identities=33% Similarity=0.575 Sum_probs=22.0
Q ss_pred EeccCCCCCCCchHHHHHHHHHHHHHH
Q 027062 196 VQFHPESIITTEGKTIVRNFIKMIVRK 222 (229)
Q Consensus 196 ~QfHPE~~~~~~~~~i~~~f~~~~~~~ 222 (229)
=|.||+...+.....|+..|++++-++
T Consensus 38 KQVhPd~gIS~kaM~ImnSfvnDifer 64 (116)
T PLN00158 38 KQVHPDTGISSKAMSIMNSFINDIFEK 64 (116)
T ss_pred HHhCCCCCccHHHHHHHHHHHHHHHHH
Confidence 389999987777888999999987543
No 486
>PRK10339 DNA-binding transcriptional repressor EbgR; Provisional
Probab=32.90 E-value=2.3e+02 Score=23.71 Aligned_cols=35 Identities=20% Similarity=0.188 Sum_probs=22.5
Q ss_pred HHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECC
Q 027062 39 NLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISP 76 (229)
Q Consensus 39 ~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~G 76 (229)
.+.+.+++.|+.+.+..... .+....++||+|+.+
T Consensus 88 ~i~~~~~~~g~~~~~~~~~~---~~~~~~~vDgiI~~~ 122 (327)
T PRK10339 88 GIETQCEKLGIELTNCYEHS---GLPDIKNVTGILIVG 122 (327)
T ss_pred HHHHHHHHCCCEEEEeeccc---cccccccCCEEEEeC
Confidence 35566778899987653221 112234789999987
No 487
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=32.62 E-value=3.1e+02 Score=24.48 Aligned_cols=11 Identities=18% Similarity=0.232 Sum_probs=8.3
Q ss_pred CCCEEEECCCC
Q 027062 68 NPRGVLISPGP 78 (229)
Q Consensus 68 ~~dgiii~GG~ 78 (229)
++|-||+++|-
T Consensus 58 ~~d~vV~spgi 68 (448)
T TIGR01082 58 DADVVVVSAAI 68 (448)
T ss_pred CCCEEEECCCC
Confidence 46888888774
No 488
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=32.49 E-value=36 Score=32.94 Aligned_cols=49 Identities=12% Similarity=0.099 Sum_probs=29.9
Q ss_pred HhccCCCEEEECCCCCCCCCcchHHHHHHHh-CCCCcEEEE-------------ehhHHHHHH
Q 027062 64 LKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV-------------CMGLQCIGE 112 (229)
Q Consensus 64 l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~-~~~~PvlGI-------------C~G~Qlla~ 112 (229)
+++.++|++|+-||.++......+.+....+ ..++|+.|| |+|+.-...
T Consensus 474 l~~~~Id~LivIGGdgs~~~a~~L~~~~~~y~~~~i~vVgIPkTIDNDv~gTd~siGfdTAln 536 (762)
T cd00764 474 FQKYGIDGLIIVGGFEAYKGLLQLREAREQYEEFCIPMVLIPATVSNNVPGTDFSLGSDTALN 536 (762)
T ss_pred HHHcCCCEEEEECChhHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCcCCCCHHHHHH
Confidence 4555789999999987643332222221112 245777776 899887654
No 489
>KOG3363 consensus Uncharacterized conserved nuclear protein [Function unknown]
Probab=32.45 E-value=1.9e+02 Score=22.45 Aligned_cols=88 Identities=14% Similarity=0.167 Sum_probs=51.8
Q ss_pred cccCcccccccccc----cccCCCceEEEEECCCc-----hhHHHHHHHHHcCCEEEEEeCCcc--CHHHHhcc--CCCE
Q 027062 5 EAVPISKSLYLDDK----KSKNNKNPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRNDEL--TVEELKRK--NPRG 71 (229)
Q Consensus 5 ~~~~~~~~~~~~~~----~~~~~~~~ilvid~~~~-----~~~~~~~~l~~~g~~~~v~~~~~~--~~~~l~~~--~~dg 71 (229)
|.+|-..+++-.|. .+...+.-+|||.+++. ....+..++++.++.+++++..+. +..-|.+. -+.+
T Consensus 88 SW~v~~fedIt~dSLslF~tlePkidlLIvG~Gd~~~p~~v~~~V~~F~k~~ki~lEi~dte~A~aTfNfLNaEgR~Vaa 167 (196)
T KOG3363|consen 88 SWSVRTFEDITTDSLSLFQTLEPKIDLLIVGCGDKKHPDKVRPSVRQFVKSHKIKLEIVDTENAAATFNFLNAEGRYVAA 167 (196)
T ss_pred eccCCChhhcCcchHhHhhhcCCCccEEEEecCCcCCchhcCHHHHHHHHHhCcceEEecchhhhhHhhhccccccEEEE
Confidence 33444444444444 24455677999988765 346789999999999999975421 11111111 1345
Q ss_pred EEECCCCCCCCCcchHHHHHH
Q 027062 72 VLISPGPGAPQDSGISLQTVL 92 (229)
Q Consensus 72 iii~GG~~~~~~~~~~~~~i~ 92 (229)
-+++.|.-+-.+.+..+..++
T Consensus 168 AL~Pp~v~s~~e~~~~~a~lk 188 (196)
T KOG3363|consen 168 ALLPPGVTSDKEYGRALALLK 188 (196)
T ss_pred EecCCcccccchhhHHHHHhh
Confidence 667777666666666554443
No 490
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=32.24 E-value=1.8e+02 Score=23.00 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=24.8
Q ss_pred HHHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCC
Q 027062 38 YNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (229)
Q Consensus 38 ~~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG 77 (229)
..+.+++++.|+.+.+........ +.+...++||||+.+.
T Consensus 19 ~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~~ 64 (267)
T cd06283 19 KGIEDVCRAHGYQVLVCNSDNDPEKEKEYLESLLAYQVDGLIVNPT 64 (267)
T ss_pred HHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEeCC
Confidence 345677778899987765432111 1223347899999774
No 491
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=32.21 E-value=2.3e+02 Score=24.68 Aligned_cols=62 Identities=13% Similarity=0.295 Sum_probs=34.9
Q ss_pred ceEEEEECCCc----hhHHHHHHHHHcCCEEEEEeCC--ccCHHH-------HhccCCCEEEECCCCCCCCCcchH
Q 027062 25 NPIIVIDNYDS----FTYNLCQYMGELGYHFEVYRND--ELTVEE-------LKRKNPRGVLISPGPGAPQDSGIS 87 (229)
Q Consensus 25 ~~ilvid~~~~----~~~~~~~~l~~~g~~~~v~~~~--~~~~~~-------l~~~~~dgiii~GG~~~~~~~~~~ 87 (229)
.|++||--... ....+.+.|+..|+++.++... +.+.+. +.+.++|.||=.||. ++-|..+.
T Consensus 29 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGG-S~iD~aK~ 103 (377)
T cd08176 29 KKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKEGCDFIISIGGG-SPHDCAKA 103 (377)
T ss_pred CeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCc-HHHHHHHH
Confidence 57787742221 2345777888889988776421 122222 223478999966663 34444443
No 492
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=31.81 E-value=1.5e+02 Score=29.95 Aligned_cols=35 Identities=11% Similarity=0.226 Sum_probs=25.2
Q ss_pred CCceEEEEECCCc----------hhHHHHHHHHHcCCEEEEEeCC
Q 027062 23 NKNPIIVIDNYDS----------FTYNLCQYMGELGYHFEVYRND 57 (229)
Q Consensus 23 ~~~~ilvid~~~~----------~~~~~~~~l~~~g~~~~v~~~~ 57 (229)
.+++|+||..+.. ....++++++++|+++.++.++
T Consensus 553 ~~kkvlilG~G~~~ig~~~efdy~~v~~i~alk~~G~~vi~v~~n 597 (1066)
T PRK05294 553 DRKKVLVLGSGPNRIGQGIEFDYCCVHAVLALREAGYETIMVNCN 597 (1066)
T ss_pred CCceEEEECccccccccccccchhHHHHHHHHHHCCCEEEEEeCC
Confidence 4678999986431 1234678899999999887654
No 493
>PTZ00463 histone H2B; Provisional
Probab=31.78 E-value=43 Score=24.21 Aligned_cols=26 Identities=27% Similarity=0.476 Sum_probs=21.8
Q ss_pred eccCCCCCCCchHHHHHHHHHHHHHH
Q 027062 197 QFHPESIITTEGKTIVRNFIKMIVRK 222 (229)
Q Consensus 197 QfHPE~~~~~~~~~i~~~f~~~~~~~ 222 (229)
|.||+...+.....|+..|++++-++
T Consensus 40 qVhPd~gIS~kaM~ImnSfvnDifEr 65 (117)
T PTZ00463 40 QVHPDTGISRKSMNIMNSFLVDTFEK 65 (117)
T ss_pred hhCCCCCccHHHHHHHHHHHHHHHHH
Confidence 89999987778888999999987543
No 494
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=31.41 E-value=3.5e+02 Score=23.53 Aligned_cols=59 Identities=15% Similarity=0.389 Sum_probs=43.1
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCc---cCHHHH----hccCCCEEEECCCCCCCC
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDE---LTVEEL----KRKNPRGVLISPGPGAPQ 82 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~---~~~~~l----~~~~~dgiii~GG~~~~~ 82 (229)
...+|+++-. +.+....++..++.|++|.++..+. .+.+++ ...++..+.|+-|..+..
T Consensus 91 Pgd~vLv~~~-G~wg~ra~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv~hgdsSTg 156 (385)
T KOG2862|consen 91 PGDNVLVVST-GTWGQRAADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFVTHGDSSTG 156 (385)
T ss_pred CCCeEEEEEe-chHHHHHHHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEEEEecCcccc
Confidence 3456777775 5788889999999999999997542 445544 334789999998866543
No 495
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=31.33 E-value=3.5e+02 Score=23.43 Aligned_cols=30 Identities=3% Similarity=0.008 Sum_probs=20.5
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEE
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFE 52 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~ 52 (229)
...+||+|.....+...+.+..+..|...+
T Consensus 58 ~gg~iLfVgTk~~~~~~V~~~A~~~g~~yV 87 (326)
T PRK12311 58 KGGRVLFVGTKRQAQDAVADAAKRSAQYFV 87 (326)
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHhCCeee
Confidence 456788888765566666677777776554
No 496
>smart00427 H2B Histone H2B.
Probab=31.33 E-value=43 Score=23.06 Aligned_cols=25 Identities=28% Similarity=0.588 Sum_probs=21.0
Q ss_pred eccCCCCCCCchHHHHHHHHHHHHH
Q 027062 197 QFHPESIITTEGKTIVRNFIKMIVR 221 (229)
Q Consensus 197 QfHPE~~~~~~~~~i~~~f~~~~~~ 221 (229)
|-||+...+.....|+..|++++-+
T Consensus 13 qVhpd~giS~kam~imnSfvnDife 37 (89)
T smart00427 13 QVHPDTGISSKAMSIMNSFVNDIFE 37 (89)
T ss_pred HhCCCccccHHHHHHHHHHHHHHHH
Confidence 8899998777888899999988654
No 497
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=31.18 E-value=2.4e+02 Score=22.42 Aligned_cols=40 Identities=20% Similarity=0.328 Sum_probs=23.8
Q ss_pred HHHHHHHHHcCCEEEEEeCCccC--HHHHh----ccCCCEEEECCC
Q 027062 38 YNLCQYMGELGYHFEVYRNDELT--VEELK----RKNPRGVLISPG 77 (229)
Q Consensus 38 ~~~~~~l~~~g~~~~v~~~~~~~--~~~l~----~~~~dgiii~GG 77 (229)
..+.+++++.|+.+.+...+... .+.+. ..++||||+.+.
T Consensus 24 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dgiii~~~ 69 (270)
T cd06294 24 RGISAVANENGYDISLATGKNEEELLEEVKKMIQQKRVDGFILLYS 69 (270)
T ss_pred HHHHHHHHHCCCEEEEecCCCcHHHHHHHHHHHHHcCcCEEEEecC
Confidence 34566777889998876543211 11222 225899999764
No 498
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=31.14 E-value=2.3e+02 Score=22.45 Aligned_cols=39 Identities=21% Similarity=0.383 Sum_probs=25.0
Q ss_pred HHHHHHHHcCCEEEEEeCCccC-H----HHHhccCCCEEEECCC
Q 027062 39 NLCQYMGELGYHFEVYRNDELT-V----EELKRKNPRGVLISPG 77 (229)
Q Consensus 39 ~~~~~l~~~g~~~~v~~~~~~~-~----~~l~~~~~dgiii~GG 77 (229)
.+.+.+++.|+.+.+...+... . +.+...++||+|+.+.
T Consensus 20 ~i~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~ 63 (266)
T cd06278 20 ALSRALQARGYQPLLINTDDDEDLDAALRQLLQYRVDGVIVTSG 63 (266)
T ss_pred HHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHHcCCCEEEEecC
Confidence 4566778889998887654221 1 1223347899999764
No 499
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=30.77 E-value=3.9e+02 Score=23.98 Aligned_cols=32 Identities=16% Similarity=0.237 Sum_probs=23.6
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeC
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN 56 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~ 56 (229)
..+|+|+..+.+- ..++++|...|+++.+...
T Consensus 14 ~~~i~v~G~G~sG-~a~a~~L~~~G~~V~~~D~ 45 (458)
T PRK01710 14 NKKVAVVGIGVSN-IPLIKFLVKLGAKVTAFDK 45 (458)
T ss_pred CCeEEEEcccHHH-HHHHHHHHHCCCEEEEECC
Confidence 3579999975432 3678889999998887763
No 500
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.64 E-value=1.6e+02 Score=25.09 Aligned_cols=56 Identities=13% Similarity=0.105 Sum_probs=37.4
Q ss_pred cCCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCC
Q 027062 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77 (229)
Q Consensus 21 ~~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG 77 (229)
.-..++|.||......-..++..|.+.|+.+.+++....+.+++-. +.|.||..=|
T Consensus 156 ~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~e~~~-~ADIVIsavg 211 (301)
T PRK14194 156 DLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAKALCR-QADIVVAAVG 211 (301)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHHHHHh-cCCEEEEecC
Confidence 3456789999874455567888899999999998755334444322 3466665433
Done!