Query 027062
Match_columns 229
No_of_seqs 195 out of 1444
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 06:45:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027062.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027062hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qdl_B Protein (anthranilate s 100.0 1E-41 3.5E-46 270.8 23.5 184 27-217 4-193 (195)
2 1i1q_B Anthranilate synthase c 100.0 3E-40 1E-44 261.8 19.6 186 25-220 1-190 (192)
3 1wl8_A GMP synthase [glutamine 100.0 2.2E-39 7.5E-44 256.1 23.2 186 25-220 1-187 (189)
4 2a9v_A GMP synthase; structura 100.0 1.4E-39 4.7E-44 261.7 18.3 190 23-225 12-205 (212)
5 3tqi_A GMP synthase [glutamine 100.0 6.9E-39 2.4E-43 288.5 13.7 188 24-220 10-205 (527)
6 2vpi_A GMP synthase; guanine m 100.0 2.9E-38 1E-42 254.9 15.9 185 24-220 24-211 (218)
7 3uow_A GMP synthetase; structu 100.0 4.9E-38 1.7E-42 284.1 16.3 190 24-220 7-230 (556)
8 2ywb_A GMP synthase [glutamine 100.0 8.2E-38 2.8E-42 280.3 17.4 182 26-219 1-184 (503)
9 1gpm_A GMP synthetase, XMP ami 100.0 7.5E-38 2.6E-42 281.8 17.1 186 24-220 7-202 (525)
10 1a9x_B Carbamoyl phosphate syn 100.0 4E-35 1.4E-39 252.5 22.3 185 24-223 190-377 (379)
11 2vxo_A GMP synthase [glutamine 100.0 1.6E-35 5.3E-40 273.0 16.5 183 22-216 27-211 (697)
12 3r75_A Anthranilate/para-amino 100.0 2.3E-35 7.8E-40 269.8 16.2 187 23-223 445-637 (645)
13 3fij_A LIN1909 protein; 11172J 100.0 5.8E-34 2E-38 234.9 17.0 177 38-221 31-242 (254)
14 3m3p_A Glutamine amido transfe 100.0 2.1E-34 7.3E-39 236.3 12.1 169 24-203 3-180 (250)
15 3l7n_A Putative uncharacterize 100.0 4.7E-33 1.6E-37 227.1 17.6 181 25-220 1-195 (236)
16 4gud_A Imidazole glycerol phos 100.0 2.6E-34 8.8E-39 230.7 8.5 181 25-222 3-207 (211)
17 1o1y_A Conserved hypothetical 100.0 2.7E-32 9.2E-37 222.9 18.5 181 24-221 12-202 (239)
18 2ywj_A Glutamine amidotransfer 100.0 4.9E-32 1.7E-36 213.4 11.8 175 25-220 1-184 (186)
19 3d54_D Phosphoribosylformylgly 100.0 3.1E-31 1.1E-35 212.8 15.7 184 24-220 2-212 (213)
20 1l9x_A Gamma-glutamyl hydrolas 100.0 1.2E-31 4.1E-36 227.2 10.5 202 22-226 28-283 (315)
21 2v4u_A CTP synthase 2; pyrimid 100.0 1.5E-30 5E-35 218.1 12.6 200 23-226 24-281 (289)
22 2w7t_A CTP synthetase, putativ 100.0 4.7E-31 1.6E-35 219.4 9.3 197 25-225 9-260 (273)
23 1gpw_B Amidotransferase HISH; 100.0 2.9E-31 9.9E-36 211.4 6.0 179 25-221 1-199 (201)
24 2nv0_A Glutamine amidotransfer 100.0 3E-29 1E-33 198.9 12.7 183 25-225 2-193 (196)
25 1vco_A CTP synthetase; tetrame 100.0 1.7E-29 5.7E-34 226.0 9.7 197 26-224 309-548 (550)
26 1ka9_H Imidazole glycerol phos 100.0 3.6E-29 1.2E-33 199.2 8.4 173 24-219 2-200 (200)
27 1s1m_A CTP synthase; CTP synth 100.0 3.1E-29 1.1E-33 224.1 8.6 192 31-226 303-543 (545)
28 1q7r_A Predicted amidotransfer 100.0 6.7E-29 2.3E-33 200.3 8.1 184 22-223 21-213 (219)
29 3nva_A CTP synthase; rossman f 99.9 6.4E-28 2.2E-32 212.6 9.6 193 23-220 292-533 (535)
30 2iss_D Glutamine amidotransfer 99.9 1.3E-27 4.6E-32 191.2 9.6 178 20-219 16-207 (208)
31 2ywd_A Glutamine amidotransfer 99.9 7E-27 2.4E-31 184.4 10.1 174 24-219 2-189 (191)
32 2abw_A PDX2 protein, glutamina 99.9 1.4E-25 4.9E-30 181.7 10.4 186 23-225 2-219 (227)
33 1jvn_A Glutamine, bifunctional 99.9 2.6E-26 9E-31 207.7 2.4 181 24-218 4-214 (555)
34 2h2w_A Homoserine O-succinyltr 99.9 4.2E-24 1.4E-28 179.1 13.3 190 23-220 46-263 (312)
35 2vdj_A Homoserine O-succinyltr 99.9 6.5E-24 2.2E-28 177.6 14.2 190 23-221 34-253 (301)
36 3ugj_A Phosphoribosylformylgly 99.6 4.9E-15 1.7E-19 143.7 12.5 193 23-219 1046-1302(1303)
37 1fy2_A Aspartyl dipeptidase; s 98.8 2.9E-09 9.9E-14 85.8 4.1 90 23-114 30-130 (229)
38 3l4e_A Uncharacterized peptida 98.7 1E-08 3.5E-13 81.3 4.3 87 24-112 27-128 (206)
39 1oi4_A Hypothetical protein YH 98.5 4.3E-07 1.5E-11 71.0 8.5 94 19-113 18-134 (193)
40 4hcj_A THIJ/PFPI domain protei 98.5 3.1E-07 1.1E-11 70.9 7.1 94 20-113 3-117 (177)
41 1vhq_A Enhancing lycopene bios 98.2 2.4E-06 8.3E-11 68.6 7.3 92 24-115 6-151 (232)
42 3l18_A Intracellular protease 98.2 2.1E-06 7.2E-11 65.3 6.3 89 24-113 2-111 (168)
43 3l3b_A ES1 family protein; ssg 98.0 9.5E-06 3.3E-10 65.6 7.2 90 25-114 24-168 (242)
44 2vrn_A Protease I, DR1199; cys 98.0 1E-05 3.4E-10 62.7 6.5 90 23-113 8-124 (190)
45 4e08_A DJ-1 beta; flavodoxin-l 98.0 1.3E-05 4.4E-10 62.2 6.3 89 24-113 5-116 (190)
46 2ab0_A YAJL; DJ-1/THIJ superfa 98.0 1E-05 3.4E-10 63.7 5.7 89 25-113 3-116 (205)
47 2rk3_A Protein DJ-1; parkinson 98.0 8.6E-06 2.9E-10 63.6 5.2 89 24-113 3-115 (197)
48 3cne_A Putative protease I; st 97.8 4.2E-05 1.4E-09 58.4 6.3 87 25-113 3-120 (175)
49 3ej6_A Catalase-3; heme, hydro 97.8 0.00014 4.7E-09 66.5 10.3 92 22-113 535-646 (688)
50 2fex_A Conserved hypothetical 97.8 4.5E-05 1.5E-09 59.0 6.2 88 25-113 2-110 (188)
51 3efe_A THIJ/PFPI family protei 97.7 6.5E-05 2.2E-09 59.4 7.2 89 25-113 6-121 (212)
52 1u9c_A APC35852; structural ge 97.7 6E-05 2E-09 59.9 6.8 74 40-113 34-138 (224)
53 3ot1_A 4-methyl-5(B-hydroxyeth 97.7 2.3E-05 7.9E-10 61.8 4.1 93 20-113 5-121 (208)
54 3gra_A Transcriptional regulat 97.7 7.6E-05 2.6E-09 58.5 6.9 91 22-113 3-117 (202)
55 3f5d_A Protein YDEA; unknow pr 97.7 7.4E-05 2.5E-09 58.9 6.1 88 24-113 3-109 (206)
56 3uk7_A Class I glutamine amido 97.6 9.2E-05 3.1E-09 64.0 7.0 91 22-113 10-137 (396)
57 3n7t_A Macrophage binding prot 97.6 6.1E-05 2.1E-09 61.0 5.0 46 68-113 105-154 (247)
58 2iuf_A Catalase; oxidoreductas 97.6 0.00022 7.5E-09 65.3 8.8 104 10-113 512-648 (688)
59 3uk7_A Class I glutamine amido 97.6 0.00014 5E-09 62.7 7.1 92 21-113 202-330 (396)
60 3er6_A Putative transcriptiona 97.5 0.00012 4E-09 57.7 5.5 90 21-113 5-124 (209)
61 3ttv_A Catalase HPII; heme ori 97.4 0.00021 7.1E-09 65.9 6.2 89 23-113 599-708 (753)
62 3fse_A Two-domain protein cont 97.4 0.00029 9.8E-09 60.2 6.5 89 24-113 10-121 (365)
63 3ewn_A THIJ/PFPI family protei 97.4 0.00046 1.6E-08 56.0 7.2 87 25-113 24-133 (253)
64 3kkl_A Probable chaperone prot 97.3 0.00022 7.6E-09 57.6 4.9 46 68-113 98-147 (244)
65 1sy7_A Catalase 1; heme oxidat 97.3 0.00052 1.8E-08 63.4 7.4 92 23-115 533-646 (715)
66 1rw7_A YDR533CP; alpha-beta sa 97.2 0.00024 8.2E-09 57.3 4.4 46 68-113 98-147 (243)
67 3noq_A THIJ/PFPI family protei 97.2 0.00068 2.3E-08 54.2 6.8 86 25-113 6-113 (231)
68 3mgk_A Intracellular protease/ 96.9 0.00034 1.2E-08 55.2 2.5 89 22-113 2-113 (211)
69 1n57_A Chaperone HSP31, protei 96.9 0.0016 5.6E-08 53.9 6.2 47 68-114 145-195 (291)
70 4gdh_A DJ-1, uncharacterized p 96.8 0.0013 4.6E-08 51.0 5.0 86 24-110 4-120 (194)
71 3bhn_A THIJ/PFPI domain protei 96.8 0.0014 4.8E-08 52.6 4.8 87 22-113 18-128 (236)
72 2qxy_A Response regulator; reg 95.8 0.021 7.2E-07 40.7 6.1 81 22-105 2-83 (142)
73 1z0s_A Probable inorganic poly 95.5 0.018 6.1E-07 47.2 5.3 87 8-107 15-101 (278)
74 3en0_A Cyanophycinase; serine 95.5 0.026 9.1E-07 46.5 6.3 87 24-112 56-160 (291)
75 2rdm_A Response regulator rece 95.4 0.086 2.9E-06 36.7 8.2 82 22-105 3-87 (132)
76 3grc_A Sensor protein, kinase; 95.3 0.06 2.1E-06 38.1 7.2 87 20-108 2-91 (140)
77 1t0b_A THUA-like protein; treh 94.9 1.2 4E-05 35.7 18.6 190 21-220 4-225 (252)
78 2pln_A HP1043, response regula 94.7 0.1 3.6E-06 36.7 6.9 80 20-105 14-94 (137)
79 3h5i_A Response regulator/sens 94.6 0.14 4.9E-06 36.3 7.6 82 22-104 3-85 (140)
80 3snk_A Response regulator CHEY 94.6 0.036 1.2E-06 39.2 4.3 85 19-105 9-95 (135)
81 3eod_A Protein HNR; response r 94.6 0.2 6.7E-06 34.8 8.2 82 23-105 6-87 (130)
82 3hzh_A Chemotaxis response reg 94.6 0.11 3.8E-06 37.7 7.0 83 21-105 33-119 (157)
83 3gt7_A Sensor protein; structu 94.5 0.14 4.8E-06 37.0 7.4 81 22-104 5-88 (154)
84 3cg4_A Response regulator rece 94.4 0.13 4.5E-06 36.3 7.0 81 22-104 5-88 (142)
85 3cnb_A DNA-binding response re 94.2 0.13 4.6E-06 36.2 6.7 84 21-105 5-92 (143)
86 3lte_A Response regulator; str 94.1 0.052 1.8E-06 38.0 4.1 83 20-104 2-87 (132)
87 2qr3_A Two-component system re 94.1 0.13 4.5E-06 36.1 6.3 82 24-105 3-88 (140)
88 2rjn_A Response regulator rece 94.0 0.23 8E-06 35.7 7.7 83 23-106 6-88 (154)
89 2zay_A Response regulator rece 94.0 0.16 5.5E-06 36.1 6.7 83 22-105 6-90 (147)
90 3cg0_A Response regulator rece 94.0 0.18 6E-06 35.5 6.9 84 21-105 6-90 (140)
91 3hv2_A Response regulator/HD d 93.8 0.21 7.2E-06 35.9 7.2 84 20-105 10-94 (153)
92 3i42_A Response regulator rece 93.7 0.16 5.6E-06 35.1 6.2 80 23-104 2-84 (127)
93 3jte_A Response regulator rece 93.7 0.29 9.8E-06 34.6 7.6 81 23-105 2-85 (143)
94 1qkk_A DCTD, C4-dicarboxylate 93.7 0.19 6.5E-06 36.2 6.7 82 23-105 2-83 (155)
95 3kht_A Response regulator; PSI 93.5 0.14 4.9E-06 36.3 5.7 81 23-105 4-89 (144)
96 3hdg_A Uncharacterized protein 93.4 0.18 6.2E-06 35.4 6.1 82 23-105 6-87 (137)
97 2gkg_A Response regulator homo 93.4 0.15 5.3E-06 34.9 5.5 79 25-103 6-86 (127)
98 3lua_A Response regulator rece 93.4 0.12 4E-06 36.6 5.0 82 22-105 2-89 (140)
99 3cz5_A Two-component response 93.2 0.28 9.4E-06 35.2 6.9 83 22-105 3-87 (153)
100 3f6c_A Positive transcription 93.2 0.44 1.5E-05 33.1 7.8 81 24-106 1-83 (134)
101 2an1_A Putative kinase; struct 93.2 0.18 6.3E-06 41.2 6.5 77 24-107 5-97 (292)
102 3kto_A Response regulator rece 93.2 0.047 1.6E-06 38.6 2.5 83 21-105 3-88 (136)
103 4e5v_A Putative THUA-like prot 93.1 3 0.0001 33.9 13.8 168 23-199 3-226 (281)
104 3nhm_A Response regulator; pro 92.8 0.4 1.4E-05 33.3 7.0 80 22-104 2-84 (133)
105 2qvg_A Two component response 92.7 0.23 7.8E-06 35.1 5.7 83 21-105 4-97 (143)
106 2j48_A Two-component sensor ki 92.6 0.42 1.4E-05 32.0 6.8 79 25-104 2-82 (119)
107 2ayx_A Sensor kinase protein R 92.4 0.58 2E-05 37.1 8.3 83 21-105 126-209 (254)
108 2b4a_A BH3024; flavodoxin-like 92.3 0.38 1.3E-05 33.7 6.5 83 20-104 11-95 (138)
109 2lpm_A Two-component response 92.3 0.067 2.3E-06 38.2 2.3 79 20-102 4-84 (123)
110 3to5_A CHEY homolog; alpha(5)b 92.1 0.14 4.7E-06 37.0 3.8 83 20-104 8-94 (134)
111 3kcn_A Adenylate cyclase homol 91.9 0.51 1.8E-05 33.7 6.9 83 21-105 1-84 (151)
112 1u0t_A Inorganic polyphosphate 91.8 0.15 5.1E-06 42.2 4.3 77 24-106 4-108 (307)
113 4e7p_A Response regulator; DNA 91.8 0.54 1.9E-05 33.5 6.9 83 21-105 17-102 (150)
114 3cfy_A Putative LUXO repressor 91.7 0.48 1.6E-05 33.4 6.4 78 25-104 5-83 (137)
115 1k68_A Phytochrome response re 91.5 0.74 2.5E-05 31.9 7.2 81 24-105 2-93 (140)
116 4dad_A Putative pilus assembly 91.5 0.31 1.1E-05 34.6 5.2 84 20-105 16-103 (146)
117 1dbw_A Transcriptional regulat 91.2 0.85 2.9E-05 31.2 7.2 80 24-105 3-83 (126)
118 3crn_A Response regulator rece 91.0 0.89 3E-05 31.5 7.2 79 24-104 3-82 (132)
119 1k66_A Phytochrome response re 91.0 0.58 2E-05 32.9 6.3 83 21-105 3-100 (149)
120 2i2c_A Probable inorganic poly 91.0 0.22 7.7E-06 40.4 4.4 64 25-107 1-71 (272)
121 3m6m_D Sensory/regulatory prot 90.6 0.2 7E-06 35.7 3.4 83 21-105 11-98 (143)
122 3a10_A Response regulator; pho 90.6 1.4 4.7E-05 29.5 7.7 78 25-104 2-80 (116)
123 1srr_A SPO0F, sporulation resp 90.5 1 3.5E-05 30.7 7.0 79 25-105 4-83 (124)
124 2pl1_A Transcriptional regulat 90.4 1.5 5E-05 29.6 7.8 79 25-105 1-80 (121)
125 3rht_A (gatase1)-like protein; 90.4 0.45 1.5E-05 38.4 5.6 53 22-76 2-58 (259)
126 2qsj_A DNA-binding response re 90.4 0.76 2.6E-05 32.8 6.5 82 24-106 3-87 (154)
127 3r0j_A Possible two component 90.3 1 3.4E-05 35.4 7.7 83 21-105 20-103 (250)
128 3hdv_A Response regulator; PSI 90.2 0.76 2.6E-05 31.9 6.2 82 22-105 5-89 (136)
129 3ff4_A Uncharacterized protein 90.0 3 0.0001 29.4 9.1 34 22-55 2-38 (122)
130 1ys7_A Transcriptional regulat 89.8 1.2 3.9E-05 34.3 7.5 80 23-104 6-86 (233)
131 3kbq_A Protein TA0487; structu 89.6 1.7 5.7E-05 32.8 7.9 88 25-115 4-107 (172)
132 2gwr_A DNA-binding response re 89.3 1.7 5.9E-05 33.6 8.3 79 24-105 5-84 (238)
133 1yio_A Response regulatory pro 89.2 0.95 3.3E-05 34.2 6.5 81 22-104 2-83 (208)
134 1kgs_A DRRD, DNA binding respo 89.1 1.4 4.9E-05 33.6 7.5 80 24-105 2-82 (225)
135 1mvo_A PHOP response regulator 88.9 1.8 6.2E-05 29.8 7.4 79 25-105 4-83 (136)
136 3gl9_A Response regulator; bet 88.8 0.53 1.8E-05 32.4 4.4 78 25-104 3-83 (122)
137 3t6k_A Response regulator rece 88.3 0.57 2E-05 32.9 4.4 80 24-105 4-86 (136)
138 3ilh_A Two component response 88.1 1.6 5.6E-05 30.4 6.8 82 22-105 7-100 (146)
139 3f6p_A Transcriptional regulat 88.1 0.68 2.3E-05 31.6 4.5 78 25-105 3-81 (120)
140 1xhf_A DYE resistance, aerobic 87.8 2 7E-05 28.9 7.0 78 24-104 3-81 (123)
141 2hqr_A Putative transcriptiona 87.8 1.1 3.6E-05 34.4 5.9 77 25-106 1-77 (223)
142 2r47_A Uncharacterized protein 87.4 0.18 6.2E-06 37.3 1.1 81 23-105 25-125 (157)
143 2qzj_A Two-component response 87.3 0.6 2.1E-05 32.7 4.0 79 23-104 3-82 (136)
144 3rqi_A Response regulator prot 87.1 0.71 2.4E-05 34.4 4.4 81 23-105 6-87 (184)
145 2qv0_A Protein MRKE; structura 87.0 1.8 6.3E-05 30.2 6.5 82 21-104 6-90 (143)
146 3mm4_A Histidine kinase homolo 86.6 2.7 9.2E-05 31.9 7.6 82 22-105 59-159 (206)
147 1tmy_A CHEY protein, TMY; chem 86.1 2.3 7.8E-05 28.5 6.4 78 25-104 3-82 (120)
148 3c3m_A Response regulator rece 86.1 0.9 3.1E-05 31.8 4.4 79 24-104 3-84 (138)
149 3rfq_A Pterin-4-alpha-carbinol 86.0 2 6.9E-05 32.7 6.4 58 23-80 29-101 (185)
150 3pzy_A MOG; ssgcid, seattle st 85.9 1.3 4.5E-05 33.0 5.3 69 23-93 6-90 (164)
151 3iwt_A 178AA long hypothetical 85.7 2.6 8.9E-05 31.6 7.0 60 21-80 12-93 (178)
152 3heb_A Response regulator rece 85.7 2.5 8.5E-05 29.9 6.7 82 22-105 2-97 (152)
153 3eq2_A Probable two-component 85.6 1.5 5.2E-05 37.0 6.3 81 22-104 3-84 (394)
154 2ark_A Flavodoxin; FMN, struct 85.5 5.8 0.0002 29.7 8.9 53 24-79 4-62 (188)
155 3n53_A Response regulator rece 85.5 1.8 6.1E-05 30.1 5.7 79 24-105 3-84 (140)
156 3qvl_A Putative hydantoin race 84.5 10 0.00034 30.1 10.2 91 24-121 1-115 (245)
157 3eul_A Possible nitrate/nitrit 84.4 3.1 0.00011 29.4 6.7 85 20-105 11-97 (152)
158 3b2n_A Uncharacterized protein 84.2 2.4 8.1E-05 29.3 5.9 79 24-104 3-84 (133)
159 1p6q_A CHEY2; chemotaxis, sign 83.7 0.78 2.7E-05 31.5 3.0 80 23-104 5-88 (129)
160 3t8y_A CHEB, chemotaxis respon 83.6 2.9 9.8E-05 30.2 6.3 84 19-105 20-106 (164)
161 3pfn_A NAD kinase; structural 83.5 3.5 0.00012 34.9 7.4 79 23-107 37-142 (365)
162 2vyc_A Biodegradative arginine 83.4 2.6 8.8E-05 39.3 7.2 82 25-108 1-96 (755)
163 1mb3_A Cell division response 83.0 1.3 4.5E-05 30.0 4.0 79 25-105 2-83 (124)
164 3q9s_A DNA-binding response re 82.9 1.1 3.8E-05 35.3 4.0 80 23-105 36-116 (249)
165 3eqz_A Response regulator; str 82.6 1.1 3.9E-05 30.8 3.5 77 23-105 2-82 (135)
166 1mkz_A Molybdenum cofactor bio 82.6 3 0.0001 31.2 6.1 57 24-80 10-81 (172)
167 1jbe_A Chemotaxis protein CHEY 82.6 1.5 5.2E-05 29.9 4.2 81 23-105 3-87 (128)
168 1zgz_A Torcad operon transcrip 82.4 1.6 5.3E-05 29.5 4.1 77 25-104 3-80 (122)
169 1rtt_A Conserved hypothetical 82.1 8 0.00027 28.9 8.5 37 21-57 3-45 (193)
170 1y5e_A Molybdenum cofactor bio 82.1 3.6 0.00012 30.6 6.3 58 23-80 12-84 (169)
171 2zki_A 199AA long hypothetical 82.0 12 0.00042 27.8 9.6 34 24-57 4-41 (199)
172 1zh2_A KDP operon transcriptio 81.7 1.3 4.6E-05 29.7 3.6 77 25-104 2-79 (121)
173 2a9o_A Response regulator; ess 81.6 1.5 5.1E-05 29.4 3.8 78 25-105 2-80 (120)
174 2bon_A Lipid kinase; DAG kinas 81.4 4 0.00014 33.8 7.0 89 24-115 29-129 (332)
175 2jba_A Phosphate regulon trans 81.4 1.2 4E-05 30.4 3.2 79 25-105 3-84 (127)
176 1iow_A DD-ligase, DDLB, D-ALA\ 80.7 5.3 0.00018 32.0 7.4 52 24-75 2-61 (306)
177 3c97_A Signal transduction his 80.4 1.6 5.4E-05 30.5 3.7 78 25-104 11-94 (140)
178 1dc7_A NTRC, nitrogen regulati 80.4 1.2 4.3E-05 30.0 3.0 78 24-103 3-81 (124)
179 2qv7_A Diacylglycerol kinase D 79.1 5.1 0.00017 33.2 6.9 88 25-115 25-125 (337)
180 3g1w_A Sugar ABC transporter; 78.7 7.3 0.00025 31.0 7.6 56 23-78 3-71 (305)
181 2pjk_A 178AA long hypothetical 78.5 4 0.00014 30.7 5.5 59 22-80 13-93 (178)
182 3eag_A UDP-N-acetylmuramate:L- 78.5 20 0.00069 29.3 10.4 36 22-57 2-37 (326)
183 2pbq_A Molybdenum cofactor bio 78.5 3.6 0.00012 30.9 5.3 58 23-80 4-80 (178)
184 2is8_A Molybdopterin biosynthe 78.4 3.3 0.00011 30.7 5.0 47 34-80 20-74 (164)
185 3tb6_A Arabinose metabolism tr 78.3 9.8 0.00034 29.9 8.3 78 24-103 15-105 (298)
186 2gk3_A Putative cytoplasmic pr 78.0 3.1 0.00011 33.2 5.1 64 38-103 43-124 (256)
187 1s8n_A Putative antiterminator 76.8 2.6 9E-05 31.6 4.2 79 24-105 13-93 (205)
188 3h1g_A Chemotaxis protein CHEY 76.6 7.1 0.00024 26.5 6.2 80 23-104 4-88 (129)
189 3jy6_A Transcriptional regulat 76.6 7 0.00024 30.6 6.9 58 21-78 4-73 (276)
190 2g2c_A Putative molybdenum cof 76.4 4.1 0.00014 30.2 5.0 55 25-79 6-80 (167)
191 1dcf_A ETR1 protein; beta-alph 76.2 2.9 9.8E-05 28.9 4.0 34 22-55 5-38 (136)
192 3afo_A NADH kinase POS5; alpha 76.0 1.7 5.7E-05 37.2 3.0 77 24-107 41-149 (388)
193 3s40_A Diacylglycerol kinase; 74.9 6.1 0.00021 32.2 6.1 89 23-115 7-108 (304)
194 3bbl_A Regulatory protein of L 74.9 28 0.00097 27.2 10.2 40 39-78 29-74 (287)
195 2oqr_A Sensory transduction pr 74.8 2.9 9.9E-05 31.9 4.0 79 25-106 5-84 (230)
196 3kke_A LACI family transcripti 74.8 13 0.00043 29.7 8.0 76 23-104 14-101 (303)
197 2vzf_A NADH-dependent FMN redu 74.7 9.3 0.00032 28.7 6.8 36 25-60 3-46 (197)
198 1vi6_A 30S ribosomal protein S 74.7 18 0.00062 27.9 8.4 76 23-104 67-145 (208)
199 3hly_A Flavodoxin-like domain; 74.7 10 0.00034 27.6 6.8 53 25-78 1-60 (161)
200 1ny5_A Transcriptional regulat 74.5 7.2 0.00025 33.0 6.7 78 25-104 1-79 (387)
201 3m9w_A D-xylose-binding peripl 74.3 13 0.00044 29.7 8.0 55 24-78 2-68 (313)
202 3n0r_A Response regulator; sig 73.9 9.4 0.00032 30.7 7.0 79 23-104 159-240 (286)
203 3l6u_A ABC-type sugar transpor 73.7 9.1 0.00031 30.1 6.9 55 23-77 7-73 (293)
204 1ehs_A STB, heat-stable entero 73.4 0.41 1.4E-05 26.5 -0.9 17 99-115 31-47 (48)
205 4eg0_A D-alanine--D-alanine li 73.0 11 0.00038 30.6 7.3 52 24-75 13-72 (317)
206 3l49_A ABC sugar (ribose) tran 72.1 5 0.00017 31.7 4.9 57 21-77 2-70 (291)
207 3rot_A ABC sugar transporter, 71.8 10 0.00035 30.1 6.7 54 24-77 3-70 (297)
208 3cu5_A Two component transcrip 70.9 6.8 0.00023 27.2 4.9 78 25-104 3-84 (141)
209 3kyj_B CHEY6 protein, putative 70.7 3.5 0.00012 28.8 3.3 82 20-104 9-94 (145)
210 2r25_B Osmosensing histidine p 70.5 4.5 0.00015 27.9 3.8 79 24-104 2-88 (133)
211 2rgy_A Transcriptional regulat 70.4 13 0.00045 29.3 7.1 76 23-104 7-97 (290)
212 1i3c_A Response regulator RCP1 70.3 5.1 0.00017 28.2 4.2 80 23-104 7-98 (149)
213 2fep_A Catabolite control prot 70.2 15 0.0005 29.0 7.3 56 22-77 14-81 (289)
214 3h5o_A Transcriptional regulat 69.6 27 0.00093 28.2 9.0 75 23-103 61-147 (339)
215 1g8l_A Molybdopterin biosynthe 69.3 9.2 0.00031 32.8 6.2 58 35-93 204-267 (411)
216 1ydg_A Trp repressor binding p 68.7 23 0.00079 26.6 7.9 35 23-57 5-44 (211)
217 3k4h_A Putative transcriptiona 68.6 39 0.0013 26.3 9.6 56 23-78 7-79 (292)
218 3cs3_A Sugar-binding transcrip 68.6 11 0.00038 29.5 6.2 55 23-78 7-67 (277)
219 1jlj_A Gephyrin; globular alph 68.3 14 0.00048 28.0 6.4 57 24-80 14-90 (189)
220 5nul_A Flavodoxin; electron tr 68.1 14 0.00048 25.7 6.1 35 39-75 18-52 (138)
221 2a5l_A Trp repressor binding p 68.0 34 0.0012 25.2 9.7 34 25-58 6-44 (200)
222 1di6_A MOGA, molybdenum cofact 67.9 7.9 0.00027 29.6 5.0 46 34-79 22-77 (195)
223 3egc_A Putative ribose operon 67.6 8.4 0.00029 30.4 5.4 57 22-78 6-74 (291)
224 3hcw_A Maltose operon transcri 67.5 19 0.00066 28.4 7.6 57 22-78 5-78 (295)
225 3o74_A Fructose transport syst 66.4 19 0.00065 27.8 7.2 54 25-78 3-68 (272)
226 1a04_A Nitrate/nitrite respons 66.4 13 0.00045 27.8 6.0 80 24-105 5-87 (215)
227 1dz3_A Stage 0 sporulation pro 66.2 4.4 0.00015 27.6 3.0 78 25-104 3-84 (130)
228 3uug_A Multiple sugar-binding 64.5 15 0.00051 29.4 6.4 54 24-77 3-68 (330)
229 3c3k_A Alanine racemase; struc 64.2 16 0.00056 28.6 6.4 75 23-104 7-93 (285)
230 3dzd_A Transcriptional regulat 64.1 6.4 0.00022 33.1 4.1 31 25-55 1-31 (368)
231 3bch_A 40S ribosomal protein S 63.6 28 0.00097 27.7 7.5 76 23-104 103-181 (253)
232 2fn9_A Ribose ABC transporter, 62.6 26 0.0009 27.3 7.4 53 25-77 3-67 (290)
233 2yxb_A Coenzyme B12-dependent 62.6 17 0.00058 26.6 5.8 78 23-101 17-104 (161)
234 3u3x_A Oxidoreductase; structu 62.6 28 0.00097 28.8 7.9 66 8-77 14-97 (361)
235 3f6r_A Flavodoxin; FMN binding 62.5 5.8 0.0002 28.2 3.1 50 25-75 2-56 (148)
236 1uuy_A CNX1, molybdopterin bio 62.3 22 0.00077 26.1 6.4 69 24-93 5-95 (167)
237 2i2x_B MTAC, methyltransferase 61.9 42 0.0014 26.5 8.4 79 22-101 121-208 (258)
238 1uz5_A MOEA protein, 402AA lon 61.6 9.4 0.00032 32.7 4.7 58 35-93 207-270 (402)
239 3kjx_A Transcriptional regulat 60.9 24 0.00081 28.6 7.0 75 23-103 67-153 (344)
240 3o1i_D Periplasmic protein TOR 60.7 13 0.00046 29.2 5.3 76 23-103 4-93 (304)
241 3nbm_A PTS system, lactose-spe 60.7 12 0.0004 25.7 4.2 74 22-104 4-85 (108)
242 2o20_A Catabolite control prot 60.0 30 0.001 27.8 7.5 55 23-77 62-128 (332)
243 2fz5_A Flavodoxin; alpha/beta 59.4 39 0.0013 23.0 10.1 35 40-76 20-54 (137)
244 4g65_A TRK system potassium up 58.8 4.4 0.00015 35.3 2.2 56 23-80 2-57 (461)
245 2zkq_b 40S ribosomal protein S 58.0 41 0.0014 27.5 7.6 76 23-104 70-148 (295)
246 1p2f_A Response regulator; DRR 57.6 14 0.00047 27.8 4.7 74 25-104 3-78 (220)
247 3klo_A Transcriptional regulat 57.4 11 0.00037 28.7 4.0 80 21-104 4-90 (225)
248 3huu_A Transcription regulator 57.3 50 0.0017 26.0 8.3 57 22-78 20-93 (305)
249 3k9c_A Transcriptional regulat 57.2 33 0.0011 26.9 7.1 54 25-78 13-76 (289)
250 4hv4_A UDP-N-acetylmuramate--L 57.2 62 0.0021 28.1 9.4 34 23-56 21-54 (494)
251 2q62_A ARSH; alpha/beta, flavo 57.1 63 0.0022 25.3 8.6 39 22-60 32-77 (247)
252 3llv_A Exopolyphosphatase-rela 56.9 15 0.0005 25.6 4.5 33 24-57 6-38 (141)
253 3d8u_A PURR transcriptional re 56.9 18 0.00062 28.0 5.4 74 24-103 3-88 (275)
254 1dbq_A Purine repressor; trans 56.6 32 0.0011 26.7 6.9 56 23-78 6-73 (289)
255 3dbi_A Sugar-binding transcrip 56.4 65 0.0022 25.8 9.0 56 23-78 60-129 (338)
256 3qk7_A Transcriptional regulat 56.3 40 0.0014 26.5 7.5 40 39-78 31-75 (294)
257 3gv0_A Transcriptional regulat 55.3 24 0.00082 27.7 6.0 55 23-77 7-75 (288)
258 3h75_A Periplasmic sugar-bindi 55.1 50 0.0017 26.7 8.1 53 24-76 3-70 (350)
259 3e3m_A Transcriptional regulat 55.1 25 0.00085 28.7 6.2 75 23-103 69-155 (355)
260 3e61_A Putative transcriptiona 55.0 14 0.00048 28.8 4.5 73 23-103 7-92 (277)
261 2ioy_A Periplasmic sugar-bindi 54.7 35 0.0012 26.6 6.8 38 40-77 23-66 (283)
262 3fwz_A Inner membrane protein 54.6 21 0.00071 25.0 5.0 34 24-58 7-40 (140)
263 1qo0_D AMIR; binding protein, 54.4 23 0.00079 25.9 5.5 76 24-105 12-87 (196)
264 1w25_A Stalked-cell differenti 54.4 15 0.00051 31.4 4.8 78 25-104 2-82 (459)
265 1f4p_A Flavodoxin; electron tr 54.4 7.8 0.00027 27.4 2.6 49 25-75 1-55 (147)
266 2q9u_A A-type flavoprotein; fl 54.2 90 0.0031 26.0 9.7 51 24-76 256-315 (414)
267 3j20_B 30S ribosomal protein S 52.6 33 0.0011 26.4 6.0 75 24-104 64-141 (202)
268 3miz_A Putative transcriptiona 52.2 26 0.00091 27.6 5.8 56 22-77 11-79 (301)
269 1eiw_A Hypothetical protein MT 52.1 11 0.00038 26.0 3.0 65 28-104 7-74 (111)
270 3c3w_A Two component transcrip 52.0 9.7 0.00033 29.0 3.0 79 25-105 2-83 (225)
271 2yq5_A D-isomer specific 2-hyd 52.0 29 0.001 28.9 6.1 50 25-75 2-52 (343)
272 2dri_A D-ribose-binding protei 51.8 36 0.0012 26.3 6.4 39 39-77 22-66 (271)
273 1wu2_A MOEA protein, molybdopt 51.7 13 0.00043 31.8 3.8 45 35-79 211-261 (396)
274 3clk_A Transcription regulator 51.2 28 0.00094 27.3 5.7 76 23-104 7-95 (290)
275 1ccw_A Protein (glutamate muta 51.1 44 0.0015 23.5 6.2 62 38-100 21-88 (137)
276 3uhf_A Glutamate racemase; str 51.0 93 0.0032 24.9 9.4 87 20-113 20-127 (274)
277 1gtz_A 3-dehydroquinate dehydr 50.6 37 0.0013 24.9 5.6 39 40-78 40-82 (156)
278 1y80_A Predicted cobalamin bin 50.3 47 0.0016 25.1 6.7 54 24-78 88-149 (210)
279 3ezx_A MMCP 1, monomethylamine 50.0 25 0.00087 27.0 5.1 94 23-118 91-199 (215)
280 3hn7_A UDP-N-acetylmuramate-L- 49.6 1.2E+02 0.0042 26.5 10.1 34 24-57 19-52 (524)
281 3gyb_A Transcriptional regulat 49.5 32 0.0011 26.7 5.8 55 22-77 3-68 (280)
282 2iks_A DNA-binding transcripti 49.4 33 0.0011 26.9 5.9 56 23-78 19-86 (293)
283 2qh8_A Uncharacterized protein 49.3 92 0.0031 24.5 8.6 77 20-104 4-97 (302)
284 3ksm_A ABC-type sugar transpor 49.0 39 0.0013 25.9 6.2 39 39-77 21-68 (276)
285 1ykg_A SIR-FP, sulfite reducta 48.6 11 0.00038 27.5 2.7 49 25-75 10-63 (167)
286 1a2o_A CHEB methylesterase; ba 48.4 12 0.00043 31.1 3.3 78 24-104 3-83 (349)
287 2fts_A Gephyrin; gephyrin, neu 48.1 13 0.00045 31.9 3.4 56 35-91 208-269 (419)
288 3brs_A Periplasmic binding pro 48.0 80 0.0027 24.3 8.0 57 22-78 3-75 (289)
289 3rpe_A MDAB, modulator of drug 47.9 34 0.0012 26.4 5.5 54 23-79 24-93 (218)
290 1qpz_A PURA, protein (purine n 47.9 57 0.002 26.2 7.3 57 22-78 56-124 (340)
291 2hig_A 6-phospho-1-fructokinas 47.3 4.4 0.00015 35.7 0.2 49 64-112 185-246 (487)
292 3u5c_A 40S ribosomal protein S 47.1 70 0.0024 25.4 7.2 75 24-104 70-147 (252)
293 3iz6_A 40S ribosomal protein S 47.0 74 0.0025 26.0 7.4 75 24-104 75-152 (305)
294 3lwz_A 3-dehydroquinate dehydr 46.3 46 0.0016 24.3 5.5 40 40-79 41-84 (153)
295 3bbn_B Ribosomal protein S2; s 46.3 51 0.0017 25.8 6.3 33 22-54 62-94 (231)
296 2f48_A Diphosphate--fructose-6 46.1 5.1 0.00017 35.9 0.5 49 64-112 162-225 (555)
297 2rjo_A Twin-arginine transloca 45.8 18 0.00062 29.2 3.8 56 22-77 3-72 (332)
298 2q5c_A NTRC family transcripti 45.3 46 0.0016 25.1 5.8 37 21-57 1-37 (196)
299 3bil_A Probable LACI-family tr 44.1 29 0.001 28.2 4.9 54 24-77 66-131 (348)
300 2hsg_A Glucose-resistance amyl 44.0 31 0.0011 27.7 5.0 56 23-78 59-126 (332)
301 1jr2_A Uroporphyrinogen-III sy 43.9 18 0.00062 28.9 3.5 92 23-118 20-135 (286)
302 3b6i_A Flavoprotein WRBA; flav 43.9 83 0.0028 23.0 7.1 33 25-57 2-40 (198)
303 2bmv_A Flavodoxin; electron tr 43.9 61 0.0021 23.1 6.2 48 25-75 2-51 (164)
304 3gbv_A Putative LACI-family tr 43.7 96 0.0033 24.0 7.9 55 23-77 7-78 (304)
305 8abp_A L-arabinose-binding pro 43.6 29 0.001 27.3 4.7 53 25-77 3-66 (306)
306 3d7n_A Flavodoxin, WRBA-like p 42.9 79 0.0027 23.3 6.9 54 20-75 2-61 (193)
307 2jk1_A HUPR, hydrogenase trans 42.8 45 0.0016 22.5 5.2 77 25-104 2-79 (139)
308 1t0i_A YLR011WP; FMN binding p 42.4 56 0.0019 23.9 5.9 31 25-55 1-44 (191)
309 2yvk_A Methylthioribose-1-phos 42.1 66 0.0023 27.1 6.8 84 18-104 201-293 (374)
310 3brq_A HTH-type transcriptiona 42.1 1.2E+02 0.004 23.4 8.5 76 23-103 18-107 (296)
311 2ohh_A Type A flavoprotein FPR 41.6 1.1E+02 0.0036 25.3 8.2 51 23-75 255-314 (404)
312 3luf_A Two-component system re 41.4 13 0.00046 29.1 2.3 82 21-104 121-206 (259)
313 1tjy_A Sugar transport protein 41.3 93 0.0032 24.7 7.5 53 24-77 3-69 (316)
314 2fvy_A D-galactose-binding per 41.3 44 0.0015 26.2 5.5 62 39-104 23-91 (309)
315 3etn_A Putative phosphosugar i 41.0 55 0.0019 25.0 5.8 82 24-105 59-143 (220)
316 3hs3_A Ribose operon repressor 41.0 27 0.00091 27.2 4.1 54 23-76 9-75 (277)
317 3fni_A Putative diflavin flavo 40.8 80 0.0028 22.6 6.4 54 24-78 4-65 (159)
318 3luf_A Two-component system re 40.6 15 0.00053 28.8 2.5 91 24-119 4-100 (259)
319 4hs4_A Chromate reductase; tri 40.2 42 0.0014 25.3 4.9 35 21-55 3-44 (199)
320 1t9k_A Probable methylthioribo 40.2 73 0.0025 26.5 6.7 82 20-104 178-268 (347)
321 1t5o_A EIF2BD, translation ini 39.7 68 0.0023 26.8 6.4 83 19-104 175-265 (351)
322 4fe7_A Xylose operon regulator 39.6 1.1E+02 0.0036 25.5 7.9 54 21-74 22-82 (412)
323 1yt5_A Inorganic polyphosphate 39.5 8.2 0.00028 30.7 0.7 34 68-107 41-74 (258)
324 2xzm_B RPS0E; ribosome, transl 39.5 29 0.001 27.4 3.9 75 24-104 66-144 (241)
325 3n8k_A 3-dehydroquinate dehydr 39.4 51 0.0017 24.5 4.9 40 40-79 62-105 (172)
326 3hno_A Pyrophosphate-dependent 38.5 5.5 0.00019 34.4 -0.5 50 64-113 100-162 (419)
327 1sqs_A Conserved hypothetical 38.1 1.3E+02 0.0045 22.9 8.6 33 25-57 2-42 (242)
328 2fzv_A Putative arsenical resi 38.0 1.4E+02 0.0047 24.0 7.8 38 22-59 56-100 (279)
329 3lk7_A UDP-N-acetylmuramoylala 37.9 1.7E+02 0.0058 24.9 9.0 33 23-56 8-40 (451)
330 3h11_A CAsp8 and FADD-like apo 37.7 47 0.0016 26.6 5.0 31 26-56 45-75 (272)
331 3lkb_A Probable branched-chain 36.8 85 0.0029 25.6 6.7 79 23-104 142-231 (392)
332 3ic5_A Putative saccharopine d 36.7 54 0.0018 21.4 4.6 33 24-57 5-38 (118)
333 2a0u_A Initiation factor 2B; S 36.3 83 0.0028 26.6 6.5 82 20-104 207-297 (383)
334 3out_A Glutamate racemase; str 36.3 95 0.0033 24.6 6.6 78 22-104 5-101 (268)
335 3e8x_A Putative NAD-dependent 36.3 64 0.0022 24.3 5.5 36 21-56 18-53 (236)
336 3usb_A Inosine-5'-monophosphat 36.1 1.3E+02 0.0046 26.2 8.1 58 64-121 314-387 (511)
337 3ius_A Uncharacterized conserv 36.1 1.1E+02 0.0039 23.5 7.1 56 24-81 5-76 (286)
338 1lss_A TRK system potassium up 36.1 48 0.0016 22.5 4.4 33 24-57 4-36 (140)
339 3l9w_A Glutathione-regulated p 36.0 38 0.0013 28.8 4.5 33 24-57 4-36 (413)
340 4ici_A Putative flavoprotein; 35.9 1.2E+02 0.0042 21.9 7.1 31 23-53 12-44 (171)
341 3hr4_A Nitric oxide synthase, 35.5 68 0.0023 24.8 5.4 98 20-119 36-157 (219)
342 3d02_A Putative LACI-type tran 35.3 48 0.0016 25.9 4.8 54 24-77 4-70 (303)
343 3d4o_A Dipicolinate synthase s 35.3 61 0.0021 25.9 5.4 34 22-56 3-36 (293)
344 1gud_A ALBP, D-allose-binding 35.1 72 0.0025 24.8 5.8 39 39-77 22-68 (288)
345 2c4w_A 3-dehydroquinate dehydr 34.4 98 0.0034 23.1 5.8 41 39-79 42-89 (176)
346 3sho_A Transcriptional regulat 34.4 1.1E+02 0.0038 22.1 6.5 79 24-105 39-122 (187)
347 2vk2_A YTFQ, ABC transporter p 34.1 1.7E+02 0.0056 22.8 10.0 54 25-78 3-68 (306)
348 1obo_A Flavodoxin; electron tr 33.9 86 0.0029 22.3 5.6 49 25-75 2-53 (169)
349 3ecs_A Translation initiation 33.6 82 0.0028 25.8 5.9 80 20-104 143-230 (315)
350 3fvw_A Putative NAD(P)H-depend 33.5 98 0.0034 22.9 6.0 33 25-57 3-41 (192)
351 3g85_A Transcriptional regulat 33.5 77 0.0026 24.5 5.7 75 23-103 10-97 (289)
352 2rir_A Dipicolinate synthase, 33.3 59 0.002 26.0 5.0 34 22-56 5-38 (300)
353 3svl_A Protein YIEF; E. coli C 33.3 55 0.0019 24.5 4.5 35 22-56 2-43 (193)
354 1ag9_A Flavodoxin; electron tr 33.1 1.4E+02 0.0046 21.6 7.4 49 25-75 1-52 (175)
355 1czn_A Flavodoxin; FMN binding 33.1 1.1E+02 0.0038 21.7 6.2 49 25-75 1-53 (169)
356 3u80_A 3-dehydroquinate dehydr 33.1 78 0.0027 23.0 5.0 41 40-80 38-82 (151)
357 1byk_A Protein (trehalose oper 32.3 48 0.0016 25.2 4.2 39 39-77 23-67 (255)
358 2h4a_A YRAM (HI1655); perplasm 32.2 20 0.00069 29.4 2.0 80 23-105 121-209 (325)
359 1e2b_A Enzyme IIB-cellobiose; 32.2 1E+02 0.0035 20.6 5.3 49 25-75 4-57 (106)
360 3r2g_A Inosine 5'-monophosphat 32.1 2.2E+02 0.0076 23.7 10.1 98 24-121 112-227 (361)
361 2a6a_A Hypothetical protein TM 32.0 19 0.00065 27.9 1.7 44 68-112 66-111 (218)
362 4evq_A Putative ABC transporte 31.8 1.6E+02 0.0053 23.6 7.5 79 23-104 150-239 (375)
363 3mwd_B ATP-citrate synthase; A 31.3 85 0.0029 26.0 5.7 80 24-107 168-261 (334)
364 3sy8_A ROCR; TIM barrel phosph 31.2 27 0.00093 29.3 2.7 77 24-102 3-82 (400)
365 2g1u_A Hypothetical protein TM 31.1 95 0.0033 21.8 5.4 34 23-57 18-51 (155)
366 3l4b_C TRKA K+ channel protien 31.1 37 0.0013 25.6 3.3 32 25-57 1-32 (218)
367 4egb_A DTDP-glucose 4,6-dehydr 30.6 1E+02 0.0036 24.6 6.2 34 20-54 20-56 (346)
368 3lzd_A DPH2; diphthamide biosy 30.5 1.3E+02 0.0045 25.3 6.7 43 37-79 283-325 (378)
369 3re1_A Uroporphyrinogen-III sy 30.5 58 0.002 25.6 4.4 97 20-121 10-118 (269)
370 3jvd_A Transcriptional regulat 30.4 40 0.0014 27.2 3.6 54 23-77 63-128 (333)
371 4dim_A Phosphoribosylglycinami 30.4 1.5E+02 0.0052 24.4 7.3 34 22-56 5-38 (403)
372 3st7_A Capsular polysaccharide 30.4 94 0.0032 25.3 5.9 56 25-81 1-59 (369)
373 2nqb_D Histone H2B; nucleosome 30.3 20 0.00068 25.2 1.4 26 197-222 45-70 (123)
374 1tzy_B Histone H2B; histone-fo 30.3 20 0.00068 25.3 1.4 26 197-222 48-73 (126)
375 4eyg_A Twin-arginine transloca 30.0 2E+02 0.0069 22.8 7.9 85 23-110 138-238 (368)
376 4id9_A Short-chain dehydrogena 30.0 1.4E+02 0.0047 23.9 6.8 61 21-82 16-91 (347)
377 3bul_A Methionine synthase; tr 29.9 1.1E+02 0.0037 27.5 6.4 77 24-101 98-183 (579)
378 1w2w_B 5-methylthioribose-1-ph 29.9 44 0.0015 25.3 3.4 77 25-104 5-92 (191)
379 3dqp_A Oxidoreductase YLBE; al 29.8 1.7E+02 0.0057 21.5 6.9 56 25-80 1-75 (219)
380 1rli_A Trp repressor binding p 29.7 1E+02 0.0035 22.1 5.5 29 25-54 4-35 (184)
381 1d4a_A DT-diaphorase, quinone 29.3 1.4E+02 0.0048 23.5 6.6 33 25-57 3-42 (273)
382 1jg7_A BGT, DNA beta-glucosylt 29.0 1E+02 0.0034 24.3 5.2 55 25-79 1-69 (351)
383 3dhn_A NAD-dependent epimerase 28.9 47 0.0016 24.8 3.5 32 24-55 4-35 (227)
384 3rih_A Short chain dehydrogena 28.9 64 0.0022 25.7 4.5 32 25-56 42-73 (293)
385 2amj_A Modulator of drug activ 28.5 1.6E+02 0.0056 21.9 6.6 52 24-75 12-77 (204)
386 3h5t_A Transcriptional regulat 28.5 2.3E+02 0.0078 22.7 9.8 55 23-77 67-137 (366)
387 1zgh_A Methionyl-tRNA formyltr 28.3 73 0.0025 25.4 4.6 54 23-76 29-85 (260)
388 3c85_A Putative glutathione-re 28.3 85 0.0029 22.7 4.8 34 23-57 38-72 (183)
389 3edo_A Flavoprotein, putative 28.3 1.5E+02 0.0053 20.7 6.4 28 25-52 4-34 (151)
390 3f2v_A General stress protein 28.0 45 0.0016 25.1 3.2 31 25-55 2-37 (192)
391 2oho_A Glutamate racemase; iso 27.7 2.2E+02 0.0076 22.3 9.6 85 16-106 4-107 (273)
392 3m2p_A UDP-N-acetylglucosamine 27.7 2.1E+02 0.0072 22.3 7.5 58 24-82 2-76 (311)
393 1kjq_A GART 2, phosphoribosylg 27.2 75 0.0026 26.2 4.8 34 22-56 9-42 (391)
394 3bre_A Probable two-component 26.7 25 0.00085 28.6 1.7 80 23-104 17-100 (358)
395 3ruf_A WBGU; rossmann fold, UD 26.7 1.6E+02 0.0055 23.5 6.7 34 21-55 22-56 (351)
396 2iuy_A Avigt4, glycosyltransfe 26.7 72 0.0025 25.4 4.5 34 24-57 3-56 (342)
397 3a11_A Translation initiation 26.4 1.5E+02 0.0051 24.5 6.4 80 20-104 163-250 (338)
398 2d59_A Hypothetical protein PH 26.1 91 0.0031 22.0 4.4 32 24-55 22-56 (144)
399 1a4i_A Methylenetetrahydrofola 26.0 1.6E+02 0.0054 24.0 6.3 55 22-77 163-217 (301)
400 1id1_A Putative potassium chan 25.8 98 0.0034 21.6 4.6 33 24-57 3-35 (153)
401 3qha_A Putative oxidoreductase 25.7 69 0.0024 25.5 4.1 37 20-57 11-47 (296)
402 1yob_A Flavodoxin 2, flavodoxi 25.7 1.4E+02 0.0047 21.6 5.6 48 26-75 2-53 (179)
403 2qu7_A Putative transcriptiona 25.6 1.6E+02 0.0055 22.6 6.3 56 24-79 8-74 (288)
404 3p2o_A Bifunctional protein fo 25.5 1.7E+02 0.0059 23.5 6.4 56 21-77 157-212 (285)
405 3o8l_A 6-phosphofructokinase, 25.2 15 0.0005 34.2 -0.1 50 64-113 485-548 (762)
406 3g68_A Putative phosphosugar i 25.1 1.1E+02 0.0037 25.3 5.3 81 22-105 32-117 (352)
407 3td9_A Branched chain amino ac 25.0 2.6E+02 0.0088 22.2 7.7 78 23-103 148-236 (366)
408 2r60_A Glycosyl transferase, g 24.9 75 0.0026 27.0 4.5 36 21-56 4-58 (499)
409 3lkv_A Uncharacterized conserv 24.9 1.3E+02 0.0044 23.9 5.6 80 21-104 137-227 (302)
410 3soz_A ORF 245 protein, cytopl 24.8 97 0.0033 24.4 4.7 36 39-76 37-78 (248)
411 2hmt_A YUAA protein; RCK, KTN, 24.7 65 0.0022 21.8 3.4 33 24-57 6-38 (144)
412 2r85_A PURP protein PF1517; AT 24.6 69 0.0024 25.6 4.0 32 24-57 2-33 (334)
413 3enk_A UDP-glucose 4-epimerase 24.6 84 0.0029 25.0 4.5 34 21-54 2-35 (341)
414 4a5o_A Bifunctional protein fo 24.3 1.8E+02 0.0061 23.5 6.3 56 21-77 158-213 (286)
415 1wcw_A Uroporphyrinogen III sy 24.3 62 0.0021 25.1 3.5 90 23-118 7-112 (261)
416 3orq_A N5-carboxyaminoimidazol 24.2 1.1E+02 0.0038 25.2 5.3 33 23-56 11-43 (377)
417 3hut_A Putative branched-chain 23.8 1.7E+02 0.0058 23.2 6.3 78 23-103 138-226 (358)
418 3h2s_A Putative NADH-flavin re 23.7 1.1E+02 0.0038 22.5 4.9 31 25-55 1-31 (224)
419 3fxa_A SIS domain protein; str 23.5 86 0.0029 23.1 4.1 79 25-105 46-127 (201)
420 3snr_A Extracellular ligand-bi 23.3 1.8E+02 0.0061 23.0 6.3 79 23-104 134-223 (362)
421 1e6u_A GDP-fucose synthetase; 23.2 1.8E+02 0.0062 22.7 6.3 57 24-80 3-67 (321)
422 4ew6_A D-galactose-1-dehydroge 23.2 2E+02 0.0067 23.2 6.5 56 21-77 22-90 (330)
423 2zuv_A Lacto-N-biose phosphory 23.1 1.6E+02 0.0056 27.0 6.2 98 22-122 436-571 (759)
424 4gi5_A Quinone reductase; prot 23.0 1.4E+02 0.0048 23.9 5.4 35 22-56 20-61 (280)
425 3q2o_A Phosphoribosylaminoimid 22.7 1.2E+02 0.0041 25.0 5.2 33 23-56 13-45 (389)
426 3k5i_A Phosphoribosyl-aminoimi 22.4 98 0.0034 25.9 4.6 33 22-55 22-54 (403)
427 3l07_A Bifunctional protein fo 22.4 2.2E+02 0.0075 22.9 6.4 55 22-77 159-213 (285)
428 2xhz_A KDSD, YRBH, arabinose 5 22.4 1.1E+02 0.0036 22.1 4.3 78 25-105 50-131 (183)
429 2ayx_A Sensor kinase protein R 22.2 47 0.0016 25.7 2.4 33 23-55 10-42 (254)
430 3i45_A Twin-arginine transloca 22.2 3.1E+02 0.011 22.0 8.3 82 23-107 141-237 (387)
431 2h0a_A TTHA0807, transcription 22.1 1.2E+02 0.0041 23.1 4.8 40 39-78 20-65 (276)
432 4b4o_A Epimerase family protei 22.1 86 0.003 24.6 4.1 53 25-78 1-61 (298)
433 3ipc_A ABC transporter, substr 21.7 1.2E+02 0.0042 24.1 5.0 78 23-103 137-225 (356)
434 4e4t_A Phosphoribosylaminoimid 21.6 1.5E+02 0.005 25.0 5.6 34 23-57 34-67 (419)
435 3h5l_A Putative branched-chain 21.5 2.4E+02 0.0081 23.1 6.9 79 23-103 163-252 (419)
436 2yvq_A Carbamoyl-phosphate syn 21.5 1.2E+02 0.0042 21.4 4.4 48 64-113 92-141 (143)
437 1suy_C CIIABD, circadian clock 21.5 32 0.0011 17.5 0.8 12 2-13 4-15 (34)
438 2h3h_A Sugar ABC transporter, 21.5 2.9E+02 0.0098 21.4 10.4 38 40-77 22-66 (313)
439 3ckm_A YRAM (HI1655), LPOA; pe 21.4 46 0.0016 26.7 2.3 80 23-105 123-211 (327)
440 3ew7_A LMO0794 protein; Q8Y8U8 21.4 1.1E+02 0.0039 22.3 4.4 31 25-55 1-31 (221)
441 3fro_A GLGA glycogen synthase; 21.4 1.2E+02 0.0042 24.7 5.0 33 24-56 2-43 (439)
442 3k96_A Glycerol-3-phosphate de 21.2 77 0.0026 26.3 3.6 37 20-57 25-61 (356)
443 3r5x_A D-alanine--D-alanine li 21.1 1.5E+02 0.0052 23.2 5.4 52 23-75 2-62 (307)
444 3r6m_A YEAZ, resuscitation pro 21.0 30 0.001 26.7 1.0 43 68-111 56-100 (213)
445 3otg_A CALG1; calicheamicin, T 21.0 1.2E+02 0.0041 24.7 4.9 39 19-57 15-57 (412)
446 2x4g_A Nucleoside-diphosphate- 21.0 1.9E+02 0.0065 22.8 6.0 32 24-55 13-44 (342)
447 4fxs_A Inosine-5'-monophosphat 21.0 3.3E+02 0.011 23.6 7.8 59 63-121 288-362 (496)
448 2l2q_A PTS system, cellobiose- 21.0 1.9E+02 0.0065 19.1 6.5 51 24-76 4-59 (109)
449 4fzr_A SSFS6; structural genom 20.5 1.1E+02 0.0038 25.0 4.6 37 20-56 11-51 (398)
450 4gnr_A ABC transporter substra 20.4 2.9E+02 0.0099 21.8 7.0 87 24-113 143-240 (353)
451 3e48_A Putative nucleoside-dip 20.3 2.7E+02 0.0092 21.3 6.7 56 25-80 1-77 (289)
452 3oti_A CALG3; calicheamicin, T 20.3 2.5E+02 0.0085 22.8 6.7 53 22-76 18-74 (398)
453 1usg_A Leucine-specific bindin 20.3 3.1E+02 0.011 21.4 7.2 78 23-103 137-225 (346)
454 2yjn_A ERYCIII, glycosyltransf 20.2 3.1E+02 0.011 22.7 7.4 56 20-77 16-76 (441)
455 2dwc_A PH0318, 433AA long hypo 20.1 1.3E+02 0.0045 25.2 5.0 33 23-56 18-50 (433)
456 1tvm_A PTS system, galactitol- 20.1 1.6E+02 0.0054 19.8 4.5 51 24-76 21-77 (113)
457 1zxx_A 6-phosphofructokinase; 20.1 17 0.00058 30.1 -0.7 16 65-80 90-105 (319)
No 1
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=100.00 E-value=1e-41 Score=270.82 Aligned_cols=184 Identities=45% Similarity=0.761 Sum_probs=157.3
Q ss_pred EEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc--hH-HHHHHHhCCCCcEEEE
Q 027062 27 IIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG--IS-LQTVLELGPTVPLFGV 103 (229)
Q Consensus 27 ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~--~~-~~~i~~~~~~~PvlGI 103 (229)
|+|||+++++..++.++|+++|+++.+++.++.+.++++..++|||||+||++++.+.. .+ .+.+++.+.++|+|||
T Consensus 4 i~iid~~~s~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dglil~gG~~~~~~~~~~~~~~~~i~~~~~~~PvLGI 83 (195)
T 1qdl_B 4 TLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKREDIGVSLDVIKYLGKRTPILGV 83 (195)
T ss_dssp EEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHCCSEEEECCCSSCTTSHHHHTTHHHHHHHHTTTSCEEEE
T ss_pred EEEEECCCchHHHHHHHHHhCCCEEEEEeCCCCCHHHHhhCCCCEEEECCCCCChhhhhhhhHHHHHHHHhcCCCcEEEE
Confidence 99999999999999999999999999999865556677655789999999999987642 23 3555556778999999
Q ss_pred ehhHHHHHHHhCCeeeecCCccccCccceeEeccCCCC--cccccCCCceeeeeeeceeeeccCCCCCCeEEEEEc-CCC
Q 027062 104 CMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGED--GLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT-EDG 180 (229)
Q Consensus 104 C~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~--~l~~~l~~~~~~~~~H~~~v~~~~l~~~~~~~la~~-~~~ 180 (229)
|+|||+|+.++||++.+.+. ..+|.+..+.... .+ ++|+++++.+.++++|++.|.. ++++++++|++ +++
T Consensus 84 C~G~QlL~~~~gg~v~~~~~-~~~g~~~~v~~~~--~~~~~l~~~~~~~~~v~~~H~~~v~~---l~~~~~vla~s~~~g 157 (195)
T 1qdl_B 84 CLGHQAIGYAFGAKIRRARK-VFHGKISNIILVN--NSPLSLYYGIAKEFKATRYHSLVVDE---VHRPLIVDAISAEDN 157 (195)
T ss_dssp THHHHHHHHHTTCEEEEEEE-EEEEEEEEEEECC--SSCCSTTTTCCSEEEEEEEEEEEEEC---CCTTEEEEEEESSSC
T ss_pred ehHHHHHHHHhCCEEeccCC-CcCCCceEEEECC--CCHhHHHhcCCCceEEeccccchhhh---CCCCcEEEEEECCCC
Confidence 99999999999999998863 4577776665542 44 8999999889999999999975 57899999999 899
Q ss_pred ceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHH
Q 027062 181 LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 217 (229)
Q Consensus 181 ~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~ 217 (229)
.++|+++++++ ++|+|||||++.++.|.+||+||++
T Consensus 158 ~i~a~~~~~~~-~~gvQfHPE~~~~~~g~~l~~~f~~ 193 (195)
T 1qdl_B 158 EIMAIHHEEYP-IYGVQFHPESVGTSLGYKILYNFLN 193 (195)
T ss_dssp CEEEEEESSSS-EEEESSBTTSTTCTTHHHHHHHHHH
T ss_pred cEEEEEeCCCC-EEEEecCCCCCCCccHHHHHHHHHh
Confidence 99999999876 9999999999977889999999997
No 2
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=100.00 E-value=3e-40 Score=261.80 Aligned_cols=186 Identities=34% Similarity=0.655 Sum_probs=147.7
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhc----cCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcE
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKR----KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL 100 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~----~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~Pv 100 (229)
++|+|||++++++.+++++|+++|+++++++++ .+.+++.+ .+.+++||+||++++.+.+.....++.+.+++|+
T Consensus 1 ~~i~iiDn~~s~~~~i~~~l~~~G~~~~v~~~~-~~~~~i~~~l~~~~~~~iil~gGpg~~~~~~~~~~l~~~~~~~~Pi 79 (192)
T 1i1q_B 1 ADILLLDNIDSFTWNLADQLRTNGHNVVIYRNH-IPAQTLIDRLATMKNPVLMLSPGPGVPSEAGCMPELLTRLRGKLPI 79 (192)
T ss_dssp CEEEEEECSCSSHHHHHHHHHHTTCEEEEEETT-SCSHHHHHHHTTCSSEEEEECCCSSCGGGSTTHHHHHHHHBTTBCE
T ss_pred CcEEEEECCccHHHHHHHHHHHCCCeEEEEECC-CCHHHHHHHhhhccCCeEEECCCCcCchhCchHHHHHHHHhcCCCE
Confidence 479999999999999999999999999999976 34445432 1346799999999988765544445556678999
Q ss_pred EEEehhHHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccCCCCCCeEEEEEcCCC
Q 027062 101 FGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDG 180 (229)
Q Consensus 101 lGIC~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~~~~la~~~~~ 180 (229)
||||+|||+|+.++||++.+.. ...+|....+.. .++++|+++++.+.++++|++.+.. ++++++++|.+ ++
T Consensus 80 lGIC~G~Qll~~~~Gg~v~~~~-~~~~g~~~~~~~---~~~~l~~~~~~~~~v~~~H~~~v~~---lp~~~~v~a~~-~~ 151 (192)
T 1i1q_B 80 IGICLGHQAIVEAYGGYVGQAG-EILHGKATSIEH---DGQAMFAGLANPLPVARYHSLVGSN---VPAGLTINAHF-NG 151 (192)
T ss_dssp EEETHHHHHHHHHTSCCCCC----CCSSEEEEEEE---CCCGGGTTSCSSEEEEECCC---CC---CCTTCEEEEEE-TT
T ss_pred EEECcChHHHHHHhCCEEEeCC-CcEecceeEEec---CCChHHhcCCCCcEEEechhhHhhh---CCCccEEEECC-CC
Confidence 9999999999999999998775 344665443332 3578999999899999999999875 57889999965 57
Q ss_pred ceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHHHH
Q 027062 181 LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 220 (229)
Q Consensus 181 ~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~~~ 220 (229)
.++++++.+++ +||+|||||++.++.|.++++||++.++
T Consensus 152 ~~~ai~~~~~~-~~gvQfHPE~~~~~~g~~il~nf~~~~~ 190 (192)
T 1i1q_B 152 MVMAVRHDADR-VCGFQFHPESILTTQGARLLEQTLAWAQ 190 (192)
T ss_dssp EEEEEEETTTT-EEEESSBTTSTTCTTHHHHHHHHHHHHT
T ss_pred cEEEEEECCCC-EEEEEccCcccCCcccHHHHHHHHHHHh
Confidence 79999998776 9999999999988899999999998764
No 3
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=100.00 E-value=2.2e-39 Score=256.14 Aligned_cols=186 Identities=27% Similarity=0.463 Sum_probs=153.3
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHh-CCCCcEEEE
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV 103 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~-~~~~PvlGI 103 (229)
|||+|||+++++..++.++|+++|+++.+++.+. +.+++...++|||||+||+ ++.+.....+.+++. +.++|+|||
T Consensus 1 mmi~iid~~~~~~~~~~~~l~~~G~~~~~~~~~~-~~~~~~~~~~dglil~Gg~-~~~~~~~~~~~i~~~~~~~~PilGI 78 (189)
T 1wl8_A 1 MMIVIMDNGGQYVHRIWRTLRYLGVETKIIPNTT-PLEEIKAMNPKGIIFSGGP-SLENTGNCEKVLEHYDEFNVPILGI 78 (189)
T ss_dssp CEEEEEECSCTTHHHHHHHHHHTTCEEEEEETTC-CHHHHHHTCCSEEEECCCS-CTTCCTTHHHHHHTGGGTCSCEEEE
T ss_pred CeEEEEECCCchHHHHHHHHHHCCCeEEEEECCC-ChHHhcccCCCEEEECCCC-ChhhhhhHHHHHHHHhhCCCeEEEE
Confidence 4699999999999999999999999999999763 5566665468999999999 776654445666654 678999999
Q ss_pred ehhHHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccCCCCCCeEEEEEcCCCceE
Q 027062 104 CMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIM 183 (229)
Q Consensus 104 C~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~~~~la~~~~~~i~ 183 (229)
|+|||+|+.++||++.+.+. .++|..... .. ..+++|+++++.+.++++|++.+.. ++++++++|+++++.++
T Consensus 79 C~G~Q~l~~~~gg~v~~~~~-~~~G~~~~~-~~--~~~~l~~~~~~~~~~~~~h~~~v~~---l~~~~~vla~s~~g~i~ 151 (189)
T 1wl8_A 79 CLGHQLIAKFFGGKVGRGEK-AEYSLVEIE-II--DEXEIFKGLPKRLKVWESHMDEVKE---LPPKFKILARSETCPIE 151 (189)
T ss_dssp THHHHHHHHHHTCEEEECSC-CSCEEEEEE-ES--CC--CCTTSCSEEEEEECCSEEEEE---CCTTEEEEEEESSCSCS
T ss_pred cHHHHHHHHHhCCceecCCC-cccCceeEE-Ee--cCchHHhCCCCceEEEEEeeeehhh---CCCCcEEEEEcCCCCEE
Confidence 99999999999999998753 346654333 22 3677898888888999999998865 57899999999999999
Q ss_pred EEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHHHH
Q 027062 184 AARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 220 (229)
Q Consensus 184 a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~~~ 220 (229)
|++++++| ++|+|||||+..++.+.++|++|++.++
T Consensus 152 a~~~~~~~-~~gvQfHPE~~~~~~g~~l~~~f~~~~~ 187 (189)
T 1wl8_A 152 AMKHEELP-IYGVQFHPEVAHTEKGEEILRNFAKLCG 187 (189)
T ss_dssp EEEESSSC-EEEESSCTTSTTSTTHHHHHHHHHHHHC
T ss_pred EEEeCCce-EEEEecCCCcCCCcchHHHHHHHHHHHh
Confidence 99998866 9999999999877789999999998763
No 4
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=100.00 E-value=1.4e-39 Score=261.73 Aligned_cols=190 Identities=26% Similarity=0.353 Sum_probs=156.6
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCC-CCCCCCc--ch-HHHHHHHhCCCC
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG-PGAPQDS--GI-SLQTVLELGPTV 98 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG-~~~~~~~--~~-~~~~i~~~~~~~ 98 (229)
.++||++||++++|..++.++|+++|+++.+++++. +.+++. ++|||||+|| ++++++. .. +.+.+. ++++
T Consensus 12 ~~~~i~~id~~~~~~~~~~~~l~~~G~~~~vv~~~~-~~~~l~--~~DglIl~GG~p~~~~~~~~~~~l~~~~~--~~~~ 86 (212)
T 2a9v_A 12 HMLKIYVVDNGGQWTHREWRVLRELGVDTKIVPNDI-DSSELD--GLDGLVLSGGAPNIDEELDKLGSVGKYID--DHNY 86 (212)
T ss_dssp CCCBEEEEEESCCTTCHHHHHHHHTTCBCCEEETTS-CGGGGT--TCSEEEEEEECSCGGGTGGGHHHHHHHHH--HCCS
T ss_pred ccceEEEEeCCCccHHHHHHHHHHCCCEEEEEeCCC-CHHHHh--CCCEEEECCCCCCCCcccccchhHHHHHH--hCCC
Confidence 357999999999999999999999999999999763 445555 4799999999 8888775 22 233333 4579
Q ss_pred cEEEEehhHHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccCCCCCCeEEEEEcC
Q 027062 99 PLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTE 178 (229)
Q Consensus 99 PvlGIC~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~~~~la~~~ 178 (229)
|+||||+|||+|+.++||++.+.+. .+.|. ..+.+. ..++||+++++.+.++++|++.+.. ++++++++|+++
T Consensus 87 PiLGIC~G~Qll~~~lGg~v~~~~~-~~~G~-~~v~~~--~~~~l~~~~~~~~~v~~~H~~~v~~---l~~~~~vlA~s~ 159 (212)
T 2a9v_A 87 PILGICVGAQFIALHFGASVVKAKH-PEFGK-TKVSVM--HSENIFGGLPSEITVWENHNDEIIN---LPDDFTLAASSA 159 (212)
T ss_dssp CEEEETHHHHHHHHHTTCEEEEEEE-EEEEE-EEEEES--CCCGGGTTCCSEEEEEEEEEEEEES---CCTTEEEEEECS
T ss_pred CEEEEChHHHHHHHHhCCEEEcCCC-cccCc-eeeEEC--CCChhHhcCCCceEEEeEhhhhHhh---CCCCcEEEEEeC
Confidence 9999999999999999999998752 34554 334443 2578999998889999999999975 578999999999
Q ss_pred CCceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHhhh
Q 027062 179 DGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKEAA 225 (229)
Q Consensus 179 ~~~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~~~~~~~~ 225 (229)
++.++|+++++++ ++|+|||||+..++.+.+||++|++.+++.+..
T Consensus 160 d~~i~ai~~~~~~-i~gvQfHPE~~~~~~g~~l~~~F~~~~~~~~~~ 205 (212)
T 2a9v_A 160 TCQVQGFYHKTRP-IYATQFHPEVEHTQYGRDIFRNFIGICASYREI 205 (212)
T ss_dssp SCSCSEEEESSSS-EEEESSCTTSTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCC-EEEEEeCCCCCCCccHHHHHHHHHHHHHHhhhc
Confidence 9999999998765 999999999987788999999999988765443
No 5
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=100.00 E-value=6.9e-39 Score=288.50 Aligned_cols=188 Identities=23% Similarity=0.405 Sum_probs=147.9
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEEE
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 103 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlGI 103 (229)
..+|+|||++++|.++++++++++|+.+++++++ .+.+++...++|||||+|||+++++.+........++.++|||||
T Consensus 10 ~~~I~IlD~g~~~~~~i~r~lr~~Gv~~~i~p~~-~~~~~i~~~~~dgIILsGGp~sv~~~~~~~~~~~~~~~~~PvLGI 88 (527)
T 3tqi_A 10 QHRILILDFGSQYAQLIARRVREIGVYCELMPCD-IDEETIRDFNPHGIILSGGPETVTLSHTLRAPAFIFEIGCPVLGI 88 (527)
T ss_dssp CSEEEEEECSCTTHHHHHHHHHHHTCEEEEEETT-CCSSSSTTTCCSEEEECCCCC---------CCCSTTTSSSCEEEE
T ss_pred CCeEEEEECCCccHHHHHHHHHHCCCeEEEEECC-CCHHHHHhcCCCEEEECCcCcccccCCChhhHHHHHhcCCCEEEE
Confidence 4689999999999999999999999999999876 445667666889999999999987654321000113568999999
Q ss_pred ehhHHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCC--------ceeeeeeeceeeeccCCCCCCeEEEE
Q 027062 104 CMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSN--------PFTAGRYHSLVIEKESFPSDALEVTA 175 (229)
Q Consensus 104 C~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~--------~~~~~~~H~~~v~~~~l~~~~~~~la 175 (229)
|+|||+|+.++||+|.+.. ..+.|.. .+... .+++||++++. .+.++++|+|.|.. +|++++++|
T Consensus 89 C~G~Qlla~~lGG~V~~~~-~~e~G~~-~v~~~--~~~~l~~~l~~~~~~~~~~~~~v~~~H~d~v~~---lp~g~~v~A 161 (527)
T 3tqi_A 89 CYGMQTMAYQLGGKVNRTA-KAEFGHA-QLRVL--NPAFLFDGIEDQVSPQGEPLLDVWMSHGDIVSE---LPPGFEATA 161 (527)
T ss_dssp THHHHHHHHHSSSCBC------CEEEE-EEEES--SCTTTTSSCCSBCCTTSCCEEEEEEESSSCBCS---CCTTCEEEE
T ss_pred ChHHHHHHHHcCCeEEeCC-Cccccce-EEEEc--CCChhhcCCccccccccccceEEEEEcccchhc---cCCCCEEEE
Confidence 9999999999999999886 3456644 34333 25789999987 58899999999976 678999999
Q ss_pred EcCCCceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHHHH
Q 027062 176 WTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 220 (229)
Q Consensus 176 ~~~~~~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~~~ 220 (229)
+++++.++|+++.+++ +||+|||||+++++.|..||+||+..++
T Consensus 162 ~s~~~~i~ai~~~~~~-~~GvQFHPE~~~t~~G~~ll~nF~~~i~ 205 (527)
T 3tqi_A 162 CTDNSPLAAMADFKRR-FFGLQFHPEVTHTPQGHRILAHFVIHIC 205 (527)
T ss_dssp EETTEEEEEEECSSSC-EEEESBCSSSTTSTTHHHHHHHHHHTTS
T ss_pred EeCCCcEEEEEcCCCC-EEEEEeccccccccccchhhhhhhhhcc
Confidence 9999999999998776 9999999999999999999999996654
No 6
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.9e-38 Score=254.85 Aligned_cols=185 Identities=23% Similarity=0.393 Sum_probs=145.4
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc--hHHHHHHHhCCCCcEE
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG--ISLQTVLELGPTVPLF 101 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~--~~~~~i~~~~~~~Pvl 101 (229)
..+|+|||++++|..++.++|+++|+++++++.+ .+.++++..++|||||+||++++++.. .+.+.+ ++.++|+|
T Consensus 24 ~~~I~iiD~g~~~~~~i~~~l~~~G~~~~vv~~~-~~~~~l~~~~~dglil~Gg~~~~~~~~~~~~~~~~--~~~~~Pil 100 (218)
T 2vpi_A 24 EGAVVILDAGAQYGKVIDRRVRELFVQSEIFPLE-TPAFAIKEQGFRAIIISGGPNSVYAEDAPWFDPAI--FTIGKPVL 100 (218)
T ss_dssp TTCEEEEECSTTTTHHHHHHHHHTTCCEEEECTT-CCHHHHHHHTCSEEEEEC---------CCCCCGGG--GTSSCCEE
T ss_pred CCeEEEEECCCchHHHHHHHHHHCCCEEEEEECC-CChHHHhhcCCCEEEECCCCcccccccchhHHHHH--HHcCCCEE
Confidence 3689999999999999999999999999999876 345666655789999999998776432 122222 35679999
Q ss_pred EEehhHHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccCCCCCCeEEEEEcCCCc
Q 027062 102 GVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGL 181 (229)
Q Consensus 102 GIC~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~~~~la~~~~~~ 181 (229)
|||+|||+|+.++||++.+.+. .+.|. ..+.+. .+++||++++..+.++++|++.|.. ++++++++|++ ++.
T Consensus 101 GIC~G~Qll~~~~GG~v~~~~~-~~~G~-~~v~~~--~~~~l~~~l~~~~~v~~~H~~~v~~---l~~~~~vlA~s-~~~ 172 (218)
T 2vpi_A 101 GICYGMQMMNKVFGGTVHKKSV-REDGV-FNISVD--NTCSLFRGLQKEEVVLLTHGDSVDK---VADGFKVVARS-GNI 172 (218)
T ss_dssp EETHHHHHHHHHTTCCEEEEEE-CSCEE-EEEEEC--TTSGGGTTCCSEEEEEECSEEEESS---CCTTCEEEEEE-TTE
T ss_pred EEcHHHHHHHHHhCCceEeCCC-CcccE-EEEEEc--cCChhHhcCCCCcEEeehhhhHhhh---cCCCCEEEEEc-CCe
Confidence 9999999999999999998763 34554 345443 3678999998888999999999975 57899999999 569
Q ss_pred eEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHH-HHHH
Q 027062 182 IMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI-KMIV 220 (229)
Q Consensus 182 i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~-~~~~ 220 (229)
++|+++.+++ ++|+|||||+..++.|.+||+||+ +.+.
T Consensus 173 i~ai~~~~~~-i~gvQfHPE~~~~~~g~~l~~~F~~~~~~ 211 (218)
T 2vpi_A 173 VAGIANESKK-LYGAQFHPEVGLTENGKVILKNFLYDIAG 211 (218)
T ss_dssp EEEEEETTTT-EEEESSCTTSTTSTTHHHHHHHHHTTTTC
T ss_pred EEEEEECCCC-EEEEEcCCCCCCChhHHHHHHHHHHHHhC
Confidence 9999998776 999999999987788999999999 6553
No 7
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=100.00 E-value=4.9e-38 Score=284.11 Aligned_cols=190 Identities=24% Similarity=0.382 Sum_probs=156.4
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcch--HHHHHHH--hCCCCc
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI--SLQTVLE--LGPTVP 99 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~--~~~~i~~--~~~~~P 99 (229)
..+|+|||++++|.++++++++++|+.+++++++ .+.+++...++|||||+||++++++.+. ....+.+ .++++|
T Consensus 7 ~~~IlilD~Gs~~~~~I~r~lre~Gv~~eiv~~~-~~~~~i~~~~~dgIIlsGGp~s~~~~~~~~~~~~l~~~a~~~g~P 85 (556)
T 3uow_A 7 YDKILVLNFGSQYFHLIVKRLNNIKIFSETKDYG-VELKDIKDMNIKGVILSGGPYSVTEAGSPHLKKEVFEYFLEKKIP 85 (556)
T ss_dssp CCEEEEEESSCTTHHHHHHHHHHTTCCEEEEETT-CCGGGTTTSCEEEEEECCCSCCTTSTTCCCCCHHHHHHHHHTTCC
T ss_pred CCEEEEEECCCccHHHHHHHHHHCCCeEEEEECC-CCHHHHhhcCCCEEEECCCCCcccccCCcchhHHHHHHhhhcCCC
Confidence 4689999999999999999999999999999976 5667776668899999999999986542 2233332 245799
Q ss_pred EEEEehhHHHHHHHhCCeeeecCCccccCccceeEeccC-----------------------------CCCcccccC-CC
Q 027062 100 LFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEK-----------------------------GEDGLLAGL-SN 149 (229)
Q Consensus 100 vlGIC~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~-----------------------------~~~~l~~~l-~~ 149 (229)
+||||+|||+|+.++||+|.+.. ..++|... +.+... ..++||+++ +.
T Consensus 86 vLGIC~G~QlLa~~lGG~V~~~~-~~E~G~~~-l~~~~~~~~~~~p~v~~~~~~~~~mg~~~n~~~~~~~~~Lf~gl~~~ 163 (556)
T 3uow_A 86 IFGICYGMQEIAVQMNGEVKKSK-TSEYGCTD-VNILRNDNINNITYCRNFGDSSSAMDLYSNYKLMNETCCLFENIKSD 163 (556)
T ss_dssp EEEETHHHHHHHHHTTCEEEEEE-EEEEEEEE-EEECCTTGGGGCSGGGGC---CCHHHHHTTSCCCC--CGGGTTCCSS
T ss_pred EEEECHHHHHHHHHhCCcEecCC-CcccCCcc-eeeccCcccccccceecccccccccccccccccccccchhhcccccC
Confidence 99999999999999999999876 34566433 222211 124799999 88
Q ss_pred ceeeeeeeceeeeccCCCCCCeEEEEEcCCCceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHHHH
Q 027062 150 PFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 220 (229)
Q Consensus 150 ~~~~~~~H~~~v~~~~l~~~~~~~la~~~~~~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~~~ 220 (229)
.+.++++|++.+.. +|++++++|+++++.++|+++.+++ +||+|||||+++++.|.+||+||+..++
T Consensus 164 ~~~v~~~H~d~V~~---lp~g~~vlA~s~~~~i~ai~~~~~~-i~GvQFHPE~~~~~~G~~ll~nFl~~i~ 230 (556)
T 3uow_A 164 ITTVWMNHNDEVTK---IPENFYLVSSSENCLICSIYNKEYN-IYGVQYHPEVYESLDGELMFYNFAYNIC 230 (556)
T ss_dssp EEEEEEEEEEEEEE---CCTTCEEEEEETTEEEEEEEETTTT-EEEESSCTTSTTSTTHHHHHHHHHTTTT
T ss_pred ceEEEEEccceeec---cCCCcEEEEEeCCCCEEEEEECCCC-EEEEEcCCCCCccccchHHHHHHHHHhh
Confidence 89999999999976 6799999999999999999998776 9999999999998899999999995543
No 8
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=100.00 E-value=8.2e-38 Score=280.34 Aligned_cols=182 Identities=25% Similarity=0.427 Sum_probs=153.0
Q ss_pred eEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcch--HHHHHHHhCCCCcEEEE
Q 027062 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI--SLQTVLELGPTVPLFGV 103 (229)
Q Consensus 26 ~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~--~~~~i~~~~~~~PvlGI 103 (229)
||+|||++++|.++++++++++|+.+++++++ .+.+++...++|||||+||++++++... ..+.+ ++.++|||||
T Consensus 1 mi~ilD~g~~~~~~i~r~l~~~G~~~~i~p~~-~~~~~i~~~~~dgiIlsGGp~s~~~~~~~~~~~~~--~~~~~PvLGI 77 (503)
T 2ywb_A 1 MVLVLDFGSQYTRLIARRLRELRAFSLILPGD-APLEEVLKHRPQALILSGGPRSVFDPDAPRPDPRL--FSSGLPLLGI 77 (503)
T ss_dssp CEEEEESSCTTHHHHHHHHHTTTCCEEEEETT-CCHHHHHTTCCSEEEECCCSSCSSCTTCCCCCGGG--GCSSCCEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHCCCEEEEEECC-CCHHHHHhcCCCEEEECCCCchhccCCCcchHHHH--HhCCCCEEEE
Confidence 49999999999999999999999999999986 5677887778899999999999886542 12222 3567999999
Q ss_pred ehhHHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccCCCCCCeEEEEEcCCCceE
Q 027062 104 CMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIM 183 (229)
Q Consensus 104 C~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~~~~la~~~~~~i~ 183 (229)
|+|||+|+.++||+|.+.. ..+.|... +.+. . ++||++++..+.++++|++.|.. +|++++++|+++++.++
T Consensus 78 C~G~Qlla~~~GG~v~~~~-~~e~G~~~-v~~~--~-~~l~~~~~~~~~v~~~H~~~v~~---lp~g~~v~A~s~~~~i~ 149 (503)
T 2ywb_A 78 CYGMQLLAQELGGRVERAG-RAEYGKAL-LTRH--E-GPLFRGLEGEVQVWMSHQDAVTA---PPPGWRVVAETEENPVA 149 (503)
T ss_dssp THHHHHHHHTTTCEEECC----CEEEEE-CSEE--C-SGGGTTCCSCCEEEEECSCEEEE---CCTTCEEEEECSSCSCS
T ss_pred CHHHHHHHHHhCCeEeeCC-CCccceEE-EEec--C-cHHhhcCCCccEEEEECCCcccc---CCCCCEEEEEECCCCEE
Confidence 9999999999999999886 34566443 3222 2 78999998889999999999986 67999999999999999
Q ss_pred EEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHHH
Q 027062 184 AARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI 219 (229)
Q Consensus 184 a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~~ 219 (229)
|+++++++ +||+|||||+++++.|.+||+||++.|
T Consensus 150 ai~~~~~~-~~gvQFHPE~~~~~~g~~ll~~F~~~~ 184 (503)
T 2ywb_A 150 AIASPDGR-AYGVQFHPEVAHTPKGMQILENFLELA 184 (503)
T ss_dssp EEECTTSS-EEEESBCTTSTTSTTHHHHHHHHHHHT
T ss_pred EEEeCCCC-EEEEecCCCcccccccHHHHHHHHHHh
Confidence 99998766 999999999998889999999999654
No 9
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=100.00 E-value=7.5e-38 Score=281.78 Aligned_cols=186 Identities=26% Similarity=0.432 Sum_probs=156.6
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcch--HHHHHHHhCCCCcEE
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI--SLQTVLELGPTVPLF 101 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~--~~~~i~~~~~~~Pvl 101 (229)
.++|+|||++++|.++++++++++|+.+++++++ .+.+++...++|||||+|||+++++... ..+.+ ++.++|||
T Consensus 7 ~~~IlIlD~g~~~~~~i~r~lr~~G~~~~i~p~~-~~~~~i~~~~~dgiILsGGp~s~~~~~~~~~~~~~--~~~g~PvL 83 (525)
T 1gpm_A 7 KHRILILDFGSQYTQLVARRVRELGVYCELWAWD-VTEAQIRDFNPSGIILSGGPESTTEENSPRAPQYV--FEAGVPVF 83 (525)
T ss_dssp SSEEEEEECSCTTHHHHHHHHHHTTCEEEEEESC-CCHHHHHHHCCSEEEECCCSSCTTSTTCCCCCGGG--GTSSSCEE
T ss_pred CCEEEEEECCCccHHHHHHHHHHCCCEEEEEECC-CCHHHHhccCCCEEEECCcCccccccCCcchHHHH--HHCCCCEE
Confidence 4689999999999999999999999999999976 5667787778899999999999876542 12222 35679999
Q ss_pred EEehhHHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCC--------ceeeeeeeceeeeccCCCCCCeEE
Q 027062 102 GVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSN--------PFTAGRYHSLVIEKESFPSDALEV 173 (229)
Q Consensus 102 GIC~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~--------~~~~~~~H~~~v~~~~l~~~~~~~ 173 (229)
|||+|||+|+.++||+|.+.+ ..+.|... +.+. ..++||++++. .+.++++|++.|.. +|+++++
T Consensus 84 GIC~G~Qlla~~~GG~V~~~~-~~e~G~~~-v~~~--~~~~L~~~l~~~~~~~~~~~~~v~~~H~~~V~~---lp~g~~v 156 (525)
T 1gpm_A 84 GVCYGMQTMAMQLGGHVEASN-EREFGYAQ-VEVV--NDSALVRGIEDALTADGKPLLDVWMSHGDKVTA---IPSDFIT 156 (525)
T ss_dssp EETHHHHHHHHHHTCEEECCS-SCEEEEEE-EEEC--SCCTTTTTCCSEECTTSCEEEEEEEEECSEEEE---CCTTCEE
T ss_pred EEChHHHHHHHHcCCEEEeCC-CcccceEE-EEeC--CCCHhhccCccccccccccceEEEEEccceeee---CCCCCEE
Confidence 999999999999999999886 34566543 3333 25689999987 78999999999986 6799999
Q ss_pred EEEcCCCceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHHHH
Q 027062 174 TAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 220 (229)
Q Consensus 174 la~~~~~~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~~~ 220 (229)
+|+++++.++|+++.+++ +||+|||||+++++.|.+||+||+..++
T Consensus 157 ~A~s~~~~i~ai~~~~~~-i~gvQFHPE~~~~~~g~~ll~nF~~~i~ 202 (525)
T 1gpm_A 157 VASTESCPFAIMANEEKR-FYGVQFHPEVTHTRQGMRMLERFVRDIC 202 (525)
T ss_dssp EEECSSCSCSEEEETTTT-EEEESBCTTSTTSTTHHHHHHHHHHTTS
T ss_pred EEECCCCCEEEEEECCCC-EEEEecCCCCCcchhHHHHHHHHHHhhh
Confidence 999999999999998766 9999999999998899999999996543
No 10
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=100.00 E-value=4e-35 Score=252.52 Aligned_cols=185 Identities=21% Similarity=0.405 Sum_probs=147.9
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHh-CCCCcEEE
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFG 102 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~-~~~~PvlG 102 (229)
+++|++||+ +...++.++|+++|+++.+++++ .+.+++...++|||||+|||+++.+....++.++++ +.++||||
T Consensus 190 ~~~V~viD~--G~k~ni~r~L~~~G~~v~vvp~~-~~~e~i~~~~~DGliLsGGPgdp~~~~~~~~~Ir~~~~~~~PILG 266 (379)
T 1a9x_B 190 PFHVVAYDF--GAKRNILRMLVDRGCRLTIVPAQ-TSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFG 266 (379)
T ss_dssp CEEEEEEES--SCCHHHHHHHHHTTEEEEEEETT-CCHHHHHTTCCSEEEECCCSBCSTTCHHHHHHHHHHTTSCCCEEE
T ss_pred CCEEEEEEC--CChHHHHHHHHHCCCEEEEEecc-CCHHHHhhcCCCEEEEeCCCCChHHHHHHHHHHHHHHHcCCCEEE
Confidence 468999998 55688999999999999999986 456777766899999999999998766666666654 56799999
Q ss_pred EehhHHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccCCCCCCeEEEEEc-CCCc
Q 027062 103 VCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT-EDGL 181 (229)
Q Consensus 103 IC~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~~~~la~~-~~~~ 181 (229)
||+|||+|+.++||++.+.+.+ .+|.+.++.... . ...+.+.++|++.|+.+++ ++++++++++ +|+.
T Consensus 267 IClG~QLLa~A~GG~v~k~~~g-h~g~n~pv~~~~--~-------g~v~its~~H~~aV~~~~L-p~~~~v~a~s~~Dg~ 335 (379)
T 1a9x_B 267 ICLGHQLLALASGAKTVKMKFG-HHGGNHPVKDVE--K-------NVVMITAQNHGFAVDEATL-PANLRVTHKSLFDGT 335 (379)
T ss_dssp ETHHHHHHHHHTTCCEEEEEEE-EEEEEEEEEETT--T-------TEEEEEEEEEEEEECSTTC-CTTEEEEEEETTTCC
T ss_pred ECchHHHHHHHhCcEEEecccc-cccCceeeEecC--C-------CcEEEEecCccceEecccC-CCCeEEEEEeCCCCc
Confidence 9999999999999999998744 345444443111 0 1123456789999976444 5789999998 6889
Q ss_pred eEEEEeCCCCcEEEEeccCCCCCCC-chHHHHHHHHHHHHHHh
Q 027062 182 IMAARHKKYKHLQGVQFHPESIITT-EGKTIVRNFIKMIVRKE 223 (229)
Q Consensus 182 i~a~~~~~~~~i~g~QfHPE~~~~~-~~~~i~~~f~~~~~~~~ 223 (229)
++|+++++++ +||+|||||+.+++ ++..||++|++.+.+++
T Consensus 336 ieai~~~~~p-i~gVQFHPE~~~~p~d~~~Lf~~Fl~~~~~~~ 377 (379)
T 1a9x_B 336 LQGIHRTDKP-AFSFQGNPEASPGPHDAAPLFDHFIELIEQYR 377 (379)
T ss_dssp EEEEEESSSS-EEEESSCTTCSSSCSTTTHHHHHHHHHHHHHH
T ss_pred EEEEEECCCC-EEEEEeCCcCCCCcccHHHHHHHHHHHHHHhh
Confidence 9999998876 99999999998776 57899999999987644
No 11
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=100.00 E-value=1.6e-35 Score=272.96 Aligned_cols=183 Identities=23% Similarity=0.401 Sum_probs=142.7
Q ss_pred CCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc--hHHHHHHHhCCCCc
Q 027062 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG--ISLQTVLELGPTVP 99 (229)
Q Consensus 22 ~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~--~~~~~i~~~~~~~P 99 (229)
....+|+|||++++|.+.+.++++++|+++++++++ .+.+++...++|||||+|||+++++.+ .+.+.+ ++.++|
T Consensus 27 ~~~~~I~VLDfg~q~~~liar~lre~Gv~~~ivp~~-~~~e~i~~~~~dGIILsGGp~s~~~~~~~~~~~~i--~~~g~P 103 (697)
T 2vxo_A 27 HYEGAVVILDAGAQYGKVIDRRVRELFVQSEIFPLE-TPAFAIKEQGFRAIIISGGPNSVYAEDAPWFDPAI--FTIGKP 103 (697)
T ss_dssp --CCCEEEEEEC--CHHHHHHHHHHTTCCEEEEETT-CCHHHHHHHTCSEEEEEECC-------CCCCCGGG--TTSSCC
T ss_pred CCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECC-CCHHHHhhcCCCEEEECCCCCcccCccchhHHHHH--HhCCCC
Confidence 345689999999999999999999999999999987 466777666899999999999987532 122222 346799
Q ss_pred EEEEehhHHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccCCCCCCeEEEEEcCC
Q 027062 100 LFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTED 179 (229)
Q Consensus 100 vlGIC~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~~~~la~~~~ 179 (229)
|||||+|||+|+.++||++.+.+. .++|. ..+.+. ..++||++++..+.++++|++.|.. ++++++++|++++
T Consensus 104 vLGIC~G~QlLa~~lGG~v~~~~~-~e~G~-~~v~~~--~~~~Lf~~l~~~~~v~~~H~~~V~~---lp~g~~vlA~s~~ 176 (697)
T 2vxo_A 104 VLGICYGMQMMNKVFGGTVHKKSV-REDGV-FNISVD--NTCSLFRGLQKEEVVLLTHGDSVDK---VADGFKVVARSGN 176 (697)
T ss_dssp EEEEEHHHHHHHHHTTCCBCC--------C-EEEEEC--TTSGGGTTCCSEEEECCCSSCCBSS---CCTTCEEEEEETT
T ss_pred EEEECHHHHHHHHHhCCeEeecCC-Cccce-EEEEec--CCChhhhcCCccCcceeecccceec---CCCCeEEEEEeCC
Confidence 999999999999999999998763 45664 445443 2578999999889999999999975 6789999999965
Q ss_pred CceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHH
Q 027062 180 GLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI 216 (229)
Q Consensus 180 ~~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~ 216 (229)
.++|+++.+++ +||+|||||+.+++.|..||+||+
T Consensus 177 -~i~ai~~~~~~-i~GvQFHPE~~~t~~g~~ll~nFl 211 (697)
T 2vxo_A 177 -IVAGIANESKK-LYGAQFHPEVGLTENGKVILKNFL 211 (697)
T ss_dssp -EEEEEEETTTT-EEEESSCTTSSSSTTHHHHHHHHH
T ss_pred -ceEEEEeCCCC-EEEEEecccCCCCccchhhhhhhh
Confidence 99999998876 999999999999899999999999
No 12
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=100.00 E-value=2.3e-35 Score=269.82 Aligned_cols=187 Identities=23% Similarity=0.366 Sum_probs=153.2
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc-hHH----HHHHH-hCC
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISL----QTVLE-LGP 96 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~-~~~----~~i~~-~~~ 96 (229)
..++|+|||++++|..++.+++++.|+++++++++.. .++ .++|||||+||++++++.. .++ +.+++ ++.
T Consensus 445 ~Gk~IlviD~gdsf~~~l~~~l~~~G~~v~Vv~~d~~--~~~--~~~DgIIlsGGPg~p~d~~~p~i~~~~~lI~~a~~~ 520 (645)
T 3r75_A 445 SGCRALIVDAEDHFTAMIAQQLSSLGLATEVCGVHDA--VDL--ARYDVVVMGPGPGDPSDAGDPRIARLYAWLRHLIDE 520 (645)
T ss_dssp TTCEEEEEESSCTHHHHHHHHHHHTTCEEEEEETTCC--CCG--GGCSEEEECCCSSCTTCTTSHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCccHHHHHHHHHHHCCCEEEEEECCCc--ccc--cCCCEEEECCCCCChhhhhhhhHHHHHHHHHHHHHC
Confidence 4678999999999999999999999999999998742 122 3689999999999998876 333 23333 356
Q ss_pred CCcEEEEehhHHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccCCCCCCeEEEEE
Q 027062 97 TVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAW 176 (229)
Q Consensus 97 ~~PvlGIC~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~~~~la~ 176 (229)
++||||||+|||+|+.++||+|.+.+. ..+|....+... .++++.++++.+.++++|...+.. +|++++++|+
T Consensus 521 ~iPiLGIClG~QlLa~alGG~V~~~~~-~~~G~~~~i~~~---~~~l~~~~~~~~~v~~~h~~~~~~---lp~g~~v~A~ 593 (645)
T 3r75_A 521 GKPFMAVCLSHQILNAILGIPLVRREV-PNQGIQVEIDLF---GQRERVGFYNTYVAQTVRDEMDVD---GVGTVAISRD 593 (645)
T ss_dssp TCCEEEETHHHHHHHHHTTCCEEEEEE-EEEEEEEEEEET---TEEEEEEEEEEEEEBCSCSEEEET---TTEEEEEEEC
T ss_pred CCCEEEECHHHHHHHHHhCCEEEcCCC-cccccceEEeee---cCcceecCCCcEEEEEehhhcccc---CCCCeEEEEE
Confidence 799999999999999999999999863 456766655543 467888887888888777666643 5789999999
Q ss_pred cCCCceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHh
Q 027062 177 TEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKE 223 (229)
Q Consensus 177 ~~~~~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~~~~~~ 223 (229)
++++.++++++++ +||+|||||+..++.|.+||+||++.+...+
T Consensus 594 s~dg~i~Ai~~~~---~~GVQFHPE~~~t~~G~~Ll~nFl~~~~~~~ 637 (645)
T 3r75_A 594 PRTGEVHALRGPT---FSSMQFHAESVLTVDGPRILGEAITHAIRRE 637 (645)
T ss_dssp TTTCBEEEEEETT---EEEESSBTTSTTCTTHHHHHHHHHHHHTTTT
T ss_pred cCCCcEEEEEcCC---EEEEEeCCeecCCcchHHHHHHHHHHHHhcc
Confidence 9999999999874 7999999999988899999999999986433
No 13
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=100.00 E-value=5.8e-34 Score=234.85 Aligned_cols=177 Identities=21% Similarity=0.303 Sum_probs=134.1
Q ss_pred HHHHHHHHHcCCEEEEEeCCccC-HHH-HhccCCCEEEECCCCC-CC--CCcc-------------h-HHHHHHH-hCCC
Q 027062 38 YNLCQYMGELGYHFEVYRNDELT-VEE-LKRKNPRGVLISPGPG-AP--QDSG-------------I-SLQTVLE-LGPT 97 (229)
Q Consensus 38 ~~~~~~l~~~g~~~~v~~~~~~~-~~~-l~~~~~dgiii~GG~~-~~--~~~~-------------~-~~~~i~~-~~~~ 97 (229)
..+.++++++|..+.+++..... .++ ++ ++|||||+||++ +| +.+. . .+..+++ ++++
T Consensus 31 ~~~~~~l~~aG~~pv~lp~~~~~~~~~~l~--~~DGlil~GG~~v~P~~yg~~~~~~~~~~~~~rd~~~~~lir~a~~~~ 108 (254)
T 3fij_A 31 QRYVDAIQKVGGFPIALPIDDPSTAVQAIS--LVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAG 108 (254)
T ss_dssp HHHHHHHHHHTCEEEEECCCCGGGHHHHHH--TCSEEEECCCSCCCGGGGTCCCCTTCCCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCEEEEEeCCCchHHHHHHh--hCCEEEECCCCCCChhhcCCccCcccCCcChhhhHHHHHHHHHHHHcC
Confidence 56889999999999999875211 222 22 689999999986 21 2110 1 2333443 4578
Q ss_pred CcEEEEehhHHHHHHHhCCeeeecCCc-----c-------ccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccC
Q 027062 98 VPLFGVCMGLQCIGEAFGGKIVRSPLG-----V-------MHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKES 165 (229)
Q Consensus 98 ~PvlGIC~G~Qlla~alGg~v~~~~~~-----~-------~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~ 165 (229)
+||||||+|||+|+.++||++.+.... . ....+..+.+. ..++|++.++..+.++++|++.|..
T Consensus 109 ~PiLGIC~G~Qll~~a~Gg~v~~~~~~~~~~~~~h~~~~~~~~g~~~v~~~--~~s~l~~~~~~~~~v~~~H~~~v~~-- 184 (254)
T 3fij_A 109 KPIFAICRGMQLVNVALGGTLYQDISQVETKALQHLQRVDEQLGSHTIDIE--PTSELAKHHPNKKLVNSLHHQFIKK-- 184 (254)
T ss_dssp CCEEEETHHHHHHHHHTTCCEESSGGGSSSCCCCCBCCSCTTSCCEEEEEC--TTSSGGGTCCTTEEECCBCSCEESS--
T ss_pred CCEEEECHHHHHHHHHhCCceecccccccCccccccCCCCCccceEEEEeC--CCChHHHhcCCcEEEEEeccchhhc--
Confidence 999999999999999999999865210 0 01123444443 3578998888888999999999975
Q ss_pred CCCCCeEEEEEcCCCceEEEEeC-CCCcEEEEeccCCCCCC--CchHHHHHHHHHHHHH
Q 027062 166 FPSDALEVTAWTEDGLIMAARHK-KYKHLQGVQFHPESIIT--TEGKTIVRNFIKMIVR 221 (229)
Q Consensus 166 l~~~~~~~la~~~~~~i~a~~~~-~~~~i~g~QfHPE~~~~--~~~~~i~~~f~~~~~~ 221 (229)
++++++++|+++++.++|++++ ++++++|+|||||++.+ +.+.+||++|++.+..
T Consensus 185 -l~~g~~v~a~s~dg~ieai~~~~~~~~~~gvQfHPE~~~~~~~~~~~lf~~Fv~~~~~ 242 (254)
T 3fij_A 185 -LAPSFKVTARTADGMIEAVEGDNLPSWYLGVQWHPELMFQTDPESEQLFQALVDESKK 242 (254)
T ss_dssp -CCSSEEEEEEETTCCEEEEEESSCSSCEEEESSCGGGTGGGCHHHHHHHHHHHHHHHS
T ss_pred -cCCCcEEEEEeCCCcEEEEEecCCCCeEEEEEcCCccCCCCCchHHHHHHHHHHHHHH
Confidence 6789999999999999999999 87779999999999865 4679999999998874
No 14
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=100.00 E-value=2.1e-34 Score=236.27 Aligned_cols=169 Identities=20% Similarity=0.236 Sum_probs=132.7
Q ss_pred CceEEEEECCC-chhHHHHHHHHHcCCEEEEEeCCccC--HHHHhccCCCEEEECCCCCCCCCcchH----HHHHHH-hC
Q 027062 24 KNPIIVIDNYD-SFTYNLCQYMGELGYHFEVYRNDELT--VEELKRKNPRGVLISPGPGAPQDSGIS----LQTVLE-LG 95 (229)
Q Consensus 24 ~~~ilvid~~~-~~~~~~~~~l~~~g~~~~v~~~~~~~--~~~l~~~~~dgiii~GG~~~~~~~~~~----~~~i~~-~~ 95 (229)
+++|+||++.. +..+++.++|++.|+++.+++.+... .++++ ++|||||+||++++++...+ .+.+++ ++
T Consensus 3 ~~~vliiqh~~~e~~~~i~~~l~~~G~~v~v~~~~~~~~~p~~~~--~~d~lIl~GGp~~~~d~~~~~~~~~~~i~~~~~ 80 (250)
T 3m3p_A 3 LKPVMIIQFSASEGPGHFGDFLAGEHIPFQVLRMDRSDPLPAEIR--DCSGLAMMGGPMSANDDLPWMPTLLALIRDAVA 80 (250)
T ss_dssp CCCEEEEESSSSCCCHHHHHHHHHTTCCEEEEEGGGTCCCCSCGG--GSSEEEECCCSSCTTSCCTTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHCCCeEEEEeccCCCcCcCccc--cCCEEEECCCCCcccccchHHHHHHHHHHHHHH
Confidence 56899998754 46789999999999999999854211 12333 67999999999998765433 233333 34
Q ss_pred CCCcEEEEehhHHHHHHHhCCeeeecCCccccCccceeEeccC-CCCcccccCCCceeeeeeeceeeeccCCCCCCeEEE
Q 027062 96 PTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEK-GEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVT 174 (229)
Q Consensus 96 ~~~PvlGIC~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~-~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~~~~l 174 (229)
.++|+||||+|+|+|+.++||+|.+.+ ..+.|.. .+..... ..+++| ++++.+.++++|++.+. +|++++++
T Consensus 81 ~~~PvlGIC~G~Qll~~~lGG~V~~~~-~~e~G~~-~v~~~~~~~~~~l~-g~~~~~~v~~~H~~~v~----lp~~~~vl 153 (250)
T 3m3p_A 81 QRVPVIGHCLGGQLLAKAMGGEVTDSP-HAEIGWV-RAWPQHVPQALEWL-GTWDELELFEWHYQTFS----IPPGAVHI 153 (250)
T ss_dssp HTCCEEEETHHHHHHHHHTTCCEEEEE-EEEEEEE-EEEECSSHHHHHHH-SCSSCEEEEEEEEEEEC----CCTTEEEE
T ss_pred cCCCEEEECHHHHHHHHHhCCEEEeCC-CCceeeE-EEEEecCCCCcccc-cCCCccEEEEEccceee----cCCCCEEE
Confidence 579999999999999999999999987 3456644 4544321 136788 78889999999999994 57899999
Q ss_pred EEcCCCceEEEEeCCCCcEEEEeccCCCC
Q 027062 175 AWTEDGLIMAARHKKYKHLQGVQFHPESI 203 (229)
Q Consensus 175 a~~~~~~i~a~~~~~~~~i~g~QfHPE~~ 203 (229)
|++++|.++|+++++ ++||+|||||++
T Consensus 154 A~s~~~~~~a~~~~~--~~~GvQfHPE~~ 180 (250)
T 3m3p_A 154 LRSEHCANQAYVLDD--LHIGFQCHIEMQ 180 (250)
T ss_dssp EEETTEEEEEEEETT--TEEEESSCTTCC
T ss_pred EEeCCCCEEEEEECC--eeEEEEeCCcCC
Confidence 999999999999987 499999999995
No 15
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=100.00 E-value=4.7e-33 Score=227.11 Aligned_cols=181 Identities=18% Similarity=0.212 Sum_probs=140.4
Q ss_pred ceEEEEECCCc-hhHHHHHHHHHcCCEEEEEeCCccC--HHHHhccCCCEEEECCCCCCCCCc---ch------HHHHHH
Q 027062 25 NPIIVIDNYDS-FTYNLCQYMGELGYHFEVYRNDELT--VEELKRKNPRGVLISPGPGAPQDS---GI------SLQTVL 92 (229)
Q Consensus 25 ~~ilvid~~~~-~~~~~~~~l~~~g~~~~v~~~~~~~--~~~l~~~~~dgiii~GG~~~~~~~---~~------~~~~i~ 92 (229)
|||+||++... ..+.+.+++++.|+++.+++..... .+++. ++|+|||+||++++.+. .. ..+.++
T Consensus 1 m~i~vi~h~~~e~~g~~~~~l~~~g~~~~~~~~~~~~~~p~~~~--~~d~lii~GGp~~~~~~~~~~~~~~~~~~~~~i~ 78 (236)
T 3l7n_A 1 MRIHFILHETFEAPGAYLAWAALRGHDVSMTKVYRYEKLPKDID--DFDMLILMGGPQSPSSTKKEFPYYDAQAEVKLIQ 78 (236)
T ss_dssp CEEEEEECCTTSCCHHHHHHHHHTTCEEEEEEGGGTCCCCSCGG--GCSEEEECCCSSCTTCCTTTCTTCCHHHHHHHHH
T ss_pred CeEEEEeCCCCCCchHHHHHHHHCCCeEEEEeeeCCCCCCCCcc--ccCEEEECCCCCCcccccccCcccchHHHHHHHH
Confidence 68999997533 3578999999999999988753211 11233 68999999999997432 12 234444
Q ss_pred H-hCCCCcEEEEehhHHHHHHHhCCeeeecCCccccCccceeEeccC-CCCcccccCCCceeeeeeeceeeeccCCCCCC
Q 027062 93 E-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEK-GEDGLLAGLSNPFTAGRYHSLVIEKESFPSDA 170 (229)
Q Consensus 93 ~-~~~~~PvlGIC~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~-~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~ 170 (229)
+ ++.++||||||+|||+|+.++||+|.+.+. .++|.. .+.+... ..+++|.+++..+.++++|++... ++++
T Consensus 79 ~~~~~~~PvLGIClG~QlL~~~~Gg~v~~~~~-~~~G~~-~v~~~~~~~~~~l~~~~~~~~~v~~~H~~~~~----lp~~ 152 (236)
T 3l7n_A 79 KAAKSEKIIVGVCLGAQLMGVAYGADYLHSPK-KEIGNY-LISLTEAGKMDSYLSDFSDDLLVGHWHGDMPG----LPDK 152 (236)
T ss_dssp HHHHTTCEEEEETHHHHHHHHHTTCCCEEEEE-EEEEEE-EEEECTTGGGCGGGTTSCSEEEEEEEEEEECC----CCTT
T ss_pred HHHHcCCCEEEEchHHHHHHHHhCCEEecCCC-ceeeeE-EEEEccCcccChHHhcCCCCcEEEEecCCccc----CCCh
Confidence 4 456899999999999999999999998863 456654 4554432 257899999999999999998743 5689
Q ss_pred eEEEEEcCCCceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHHHH
Q 027062 171 LEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 220 (229)
Q Consensus 171 ~~~la~~~~~~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~~~ 220 (229)
++++|+++++.++|+++++ ++||+|||||++ ..++++|++...
T Consensus 153 ~~vla~s~~~~~~a~~~~~--~v~gvQfHPE~~-----~~~~~~~~~~~~ 195 (236)
T 3l7n_A 153 AQVLAISQGCPRQIIKFGP--KQYAFQCHLEFT-----PELVAALIAQED 195 (236)
T ss_dssp CEEEEECSSCSCSEEEEET--TEEEESSBSSCC-----HHHHHHHHHHCS
T ss_pred heEEEECCCCCEEEEEECC--CEEEEEeCCCCC-----HHHHHHHHHhhh
Confidence 9999999999999999875 499999999995 578999988765
No 16
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=100.00 E-value=2.6e-34 Score=230.69 Aligned_cols=181 Identities=21% Similarity=0.263 Sum_probs=126.4
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHH---HHH-hCCCCcE
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQT---VLE-LGPTVPL 100 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~---i~~-~~~~~Pv 100 (229)
.+|+|||++.++..++.++|+++|+++++++. .++++ ++|+|||+|| +++.+....++. +.. .+.++||
T Consensus 3 ~~I~iiD~g~~n~~si~~al~~~G~~~~v~~~----~~~l~--~~D~lilPG~-g~~~~~~~~~~~~~~i~~~~~~~~Pv 75 (211)
T 4gud_A 3 QNVVIIDTGCANISSVKFAIERLGYAVTISRD----PQVVL--AADKLFLPGV-GTASEAMKNLTERDLIELVKRVEKPL 75 (211)
T ss_dssp CCEEEECCCCTTHHHHHHHHHHTTCCEEEECC----HHHHH--HCSEEEECCC-SCHHHHHHHHHHTTCHHHHHHCCSCE
T ss_pred CEEEEEECCCChHHHHHHHHHHCCCEEEEECC----HHHHh--CCCEEEECCC-CCHHHHHHHHHhcChHHHHHHcCCCE
Confidence 47999999999999999999999999998752 46676 4599999864 443332222111 111 2357999
Q ss_pred EEEehhHHHHHHHhCCeeeecCCccc--------------------cCccceeEeccCCCCcccccCCCceeeeeeecee
Q 027062 101 FGVCMGLQCIGEAFGGKIVRSPLGVM--------------------HGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLV 160 (229)
Q Consensus 101 lGIC~G~Qlla~alGg~v~~~~~~~~--------------------~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~ 160 (229)
||||+|||+|+.++|+++.+...... +..+..+.. ...+++|++++..+.++++|++.
T Consensus 76 lGIClG~QlL~~~~g~~~~~~~~~~~gl~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~H~~~ 153 (211)
T 4gud_A 76 LGICLGMQLLGKLSEEKGQKADEIVQCLGLVDGEVRLLQTGDLPLPHMGWNTVQV--KEGHPLFNGIEPDAYFYFVHSFA 153 (211)
T ss_dssp EEETHHHHTTSSEECCC----CCCEECCCSSSCEEEECCCTTSCSSEEEEECCEE--CTTCGGGTTCCTTCCEEEEESEE
T ss_pred EEEchhHhHHHHHhCCcccccCCccccceeccceEEEcccCCcceeeccceeeee--eccChhhcCCCCCcEEEEEeeEE
Confidence 99999999999999988765432110 011111111 23678999999999999999998
Q ss_pred eeccCCCCCCeEEEEEcCCCceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHHHHHH
Q 027062 161 IEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRK 222 (229)
Q Consensus 161 v~~~~l~~~~~~~la~~~~~~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~~~~~ 222 (229)
+. .+..++|+++++...+..+.+++ +||+|||||++ ++.|.+||+||++.+.++
T Consensus 154 v~------~~~~~~a~~~~g~~~~~~v~~~~-v~GvQFHPE~s-~~~G~~ll~nFl~~~ge~ 207 (211)
T 4gud_A 154 MP------VGDYTIAQCEYGQPFSAAIQAGN-YYGVQFHPERS-SKAGARLIQNFLELRGEN 207 (211)
T ss_dssp CC------CCTTEEEEEESSSEEEEEEEETT-EEEESSCGGGS-HHHHHHHHHHHHHC----
T ss_pred eC------CCCeEEEEecCCCeEEEEEeCCC-EEEEEccCEec-CccHHHHHHHHHHHhccc
Confidence 74 34567888888866555555555 99999999986 778999999999887644
No 17
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=100.00 E-value=2.7e-32 Score=222.94 Aligned_cols=181 Identities=15% Similarity=0.184 Sum_probs=140.2
Q ss_pred CceEEEEECCCc-hhHHHHHHHHHcCCEEEEEeCCccC--HHHHhccCCCEEEECCCCCCCCCcc--hH----HHHHHH-
Q 027062 24 KNPIIVIDNYDS-FTYNLCQYMGELGYHFEVYRNDELT--VEELKRKNPRGVLISPGPGAPQDSG--IS----LQTVLE- 93 (229)
Q Consensus 24 ~~~ilvid~~~~-~~~~~~~~l~~~g~~~~v~~~~~~~--~~~l~~~~~dgiii~GG~~~~~~~~--~~----~~~i~~- 93 (229)
..||+||++... ...++.+++++.|+++.+++.++.. .+++. ++|||||+||+.++++.. .+ .+.+++
T Consensus 12 ~~~~~~i~~~~~~~~~~i~~~l~~~G~~v~v~~~~~~~~~~~~l~--~~Dglil~GG~~~~~~~~~~~~l~~~~~~i~~~ 89 (239)
T 1o1y_A 12 HVRVLAIRHVEIEDLGMMEDIFREKNWSFDYLDTPKGEKLERPLE--EYSLVVLLGGYMGAYEEEKYPFLKYEFQLIEEI 89 (239)
T ss_dssp CCEEEEECSSTTSSCTHHHHHHHHTTCEEEEECGGGTCCCSSCGG--GCSEEEECCCSCCTTCTTTCTHHHHHHHHHHHH
T ss_pred eeEEEEEECCCCCCchHHHHHHHhCCCcEEEeCCcCccccccchh--cCCEEEECCCCccccCCccChhHHHHHHHHHHH
Confidence 468999998644 5678999999999999987764211 12233 679999999998887642 22 334443
Q ss_pred hCCCCcEEEEehhHHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCceeeeeeeceeeeccCCCCCCeEE
Q 027062 94 LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEV 173 (229)
Q Consensus 94 ~~~~~PvlGIC~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~~~~ 173 (229)
+++++|+||||+|||+|+.++||++.+.+.+.+.| +..+... ..++||+++++.+.++++|++.+. +++++++
T Consensus 90 ~~~~~PiLGIC~G~QlL~~alGG~v~~~~~g~~~G-~~~v~~~--~~~~l~~~~~~~~~~~~~H~~~v~----lp~~~~v 162 (239)
T 1o1y_A 90 LKKEIPFLGICLGSQMLAKVLGASVYRGKNGEEIG-WYFVEKV--SDNKFFREFPDRLRVFQWHGDTFD----LPRRATR 162 (239)
T ss_dssp HHHTCCEEEETHHHHHHHHHTTCCEEECTTCCEEE-EEEEEEC--CCCGGGTTSCSEEEEEEEESEEEC----CCTTCEE
T ss_pred HHCCCCEEEEchhHHHHHHHcCCeEecCCCCCccc-cEEEEEC--CCCchHHhCCCCceeEeecCCccc----cCCCCEE
Confidence 34679999999999999999999999987545455 3444432 367899999988999999999984 5689999
Q ss_pred EEEcCCCceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHHHHH
Q 027062 174 TAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVR 221 (229)
Q Consensus 174 la~~~~~~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~~~~ 221 (229)
+|+++++.++|+++++ ++|+|||||++ ..++++|++....
T Consensus 163 lA~s~~~~iea~~~~~---i~gvQfHPE~~-----~~~~~~~~~~~~~ 202 (239)
T 1o1y_A 163 VFTSEKYENQGFVYGK---AVGLQFHIEVG-----ARTMKRWIEAYKD 202 (239)
T ss_dssp EEECSSCSCSEEEETT---EEEESSBSSCC-----HHHHHHHHHHTHH
T ss_pred EEEcCCCCEEEEEECC---EEEEEeCccCC-----HHHHHHHHHHhHH
Confidence 9999999999999873 99999999995 2589999876543
No 18
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=99.97 E-value=4.9e-32 Score=213.40 Aligned_cols=175 Identities=19% Similarity=0.264 Sum_probs=126.6
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcch----HHHHHHHhCCCCcE
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI----SLQTVLELGPTVPL 100 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~----~~~~i~~~~~~~Pv 100 (229)
|+|+|||+++++.. +.++|+++|+++.+++.+ ++++ ++|||||+||++++++... +.+.++ +.++|+
T Consensus 1 m~i~vl~~~g~~~~-~~~~l~~~G~~~~~~~~~----~~~~--~~dglil~GG~~~~~~~~~~~~~~~~~i~--~~~~Pi 71 (186)
T 2ywj_A 1 MIIGVLAIQGDVEE-HEEAIKKAGYEAKKVKRV----EDLE--GIDALIIPGGESTAIGKLMKKYGLLEKIK--NSNLPI 71 (186)
T ss_dssp CEEEEECSSSCCHH-HHHHHHHTTSEEEEECSG----GGGT--TCSEEEECCSCHHHHHHHHHHTTHHHHHH--TCCCCE
T ss_pred CEEEEEecCcchHH-HHHHHHHCCCEEEEECCh----HHhc--cCCEEEECCCCchhhhhhhhccCHHHHHH--hcCCcE
Confidence 68999999777665 459999999999988742 3444 5799999999876653211 233343 678999
Q ss_pred EEEehhHHHHHHHhCCeeeecCCccccCccceeEe----ccCCCCcccccCCCceeeeeeeceeeeccCCC-CCCeEEEE
Q 027062 101 FGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYY----DEKGEDGLLAGLSNPFTAGRYHSLVIEKESFP-SDALEVTA 175 (229)
Q Consensus 101 lGIC~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~----~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~-~~~~~~la 175 (229)
||||+|||+|+.++||++... +...+....... .....+.++.++ +.+.++++|++.|.. + +++++++|
T Consensus 72 lGIC~G~Qll~~~~gg~~~~l--g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~H~~~v~~---l~~~~~~v~a 145 (186)
T 2ywj_A 72 LGTCAGMVLLSKGTGINQILL--ELMDITVKRNAYGRQVDSFEKEIEFKDL-GKVYGVFIRAPVVDK---ILSDDVEVIA 145 (186)
T ss_dssp EEETHHHHHHSSCCSSCCCCC--CCSSEEEETTTTCSSSCCEEEEEEETTT-EEEEEEESSCCEEEE---ECCTTCEEEE
T ss_pred EEECHHHHHHHHHhCCCcCcc--CCCceeEEeccCCCcccceecccccccC-CcEEEEEEecceeee---cCCCCeEEEE
Confidence 999999999999999985322 111111000000 000012456666 678899999999975 5 68999999
Q ss_pred EcCCCceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHHHH
Q 027062 176 WTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 220 (229)
Q Consensus 176 ~~~~~~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~~~ 220 (229)
++ ++.++|++++ +++|+|||||++. +|.+||++|++.+.
T Consensus 146 ~s-d~~~~a~~~~---~~~gvQfHPE~~~--~g~~l~~~F~~~~~ 184 (186)
T 2ywj_A 146 RD-GDKIVGVKQG---KYMALSFHPELSE--DGYKVYKYFVENCV 184 (186)
T ss_dssp EE-TTEEEEEEET---TEEEESSCGGGST--THHHHHHHHHHHHT
T ss_pred EE-CCEEEEEeeC---CEEEEECCCCcCC--chhHHHHHHHHHHh
Confidence 99 7889999974 4999999999864 58999999999874
No 19
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=99.97 E-value=3.1e-31 Score=212.80 Aligned_cols=184 Identities=15% Similarity=0.177 Sum_probs=138.1
Q ss_pred CceEEEEECCCchh-HHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCc--------chHHHHHHH-
Q 027062 24 KNPIIVIDNYDSFT-YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS--------GISLQTVLE- 93 (229)
Q Consensus 24 ~~~ilvid~~~~~~-~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~--------~~~~~~i~~- 93 (229)
+++|+||++.+.+. .++.++|+++|+++.+++.++ ++. ++|+|||+||.....+. ....+.+++
T Consensus 2 ~~~i~il~~~~~~~~~~~~~~l~~~g~~~~~~~~~~----~~~--~~d~lil~Gg~~~~~~~~~~~~~~~~~~~~~l~~~ 75 (213)
T 3d54_D 2 KPRACVVVYPGSNCDRDAYHALEINGFEPSYVGLDD----KLD--DYELIILPGGFSYGDYLRPGAVAAREKIAFEIAKA 75 (213)
T ss_dssp CCEEEEECCTTEEEHHHHHHHHHTTTCEEEEECTTC----CCS--SCSEEEECEECGGGGCSSTTHHHHTSTTHHHHHHH
T ss_pred CcEEEEEEcCCCCccHHHHHHHHHCCCEEEEEecCC----Ccc--cCCEEEECCCCchhhhhccccccccHHHHHHHHHH
Confidence 46899999877764 788999999999999987541 222 67999999997543221 223445543
Q ss_pred hCCCCcEEEEehhHHHHHHH--hCCeeeecCCccccCccceeEeccCCCCcccccCCC--ceeeeeee---ceeeeccCC
Q 027062 94 LGPTVPLFGVCMGLQCIGEA--FGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSN--PFTAGRYH---SLVIEKESF 166 (229)
Q Consensus 94 ~~~~~PvlGIC~G~Qlla~a--lGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~--~~~~~~~H---~~~v~~~~l 166 (229)
.++++||||||+|+|+|+.+ ++|++.+.+....+..+..+.+.. .++++++.+++ .+.++.+| ++.+.
T Consensus 76 ~~~~~pilgIC~G~qlLa~aGll~g~v~~~~~~~~~~g~~~v~~~~-~~~~l~~~~~~~~~~~~~~~H~~~s~~~~---- 150 (213)
T 3d54_D 76 AERGKLIMGICNGFQILIEMGLLKGALLQNSSGKFICKWVDLIVEN-NDTPFTNAFEKGEKIRIPIAHGFGRYVKI---- 150 (213)
T ss_dssp HHHTCEEEECHHHHHHHHHHTSSCSEEECCSSSSCBCCEEEEEECC-CSSTTSTTSCTTCEEEEECCBSSCEEECS----
T ss_pred HHCCCEEEEECHHHHHHHHcCCCCCCeecCCCCceEeeeEEEEeCC-CCCceeeccCCCCEEEEEeecCceEEEec----
Confidence 24579999999999999999 999998876333245566665542 36789998875 56666688 55553
Q ss_pred CCCCeEEEEEcCC-----CceEEEEeCCCCcEEEEeccCCCCC-----CCchHHHHHHHHHHHH
Q 027062 167 PSDALEVTAWTED-----GLIMAARHKKYKHLQGVQFHPESII-----TTEGKTIVRNFIKMIV 220 (229)
Q Consensus 167 ~~~~~~~la~~~~-----~~i~a~~~~~~~~i~g~QfHPE~~~-----~~~~~~i~~~f~~~~~ 220 (229)
++++.++|++++ +.++|+++.+++ +||+|||||++. ++.+.+||+||++.++
T Consensus 151 -~~~~~~~a~~~~~ng~~~~i~a~~~~~~~-~~gvQfHPE~~~~~~~~~~~g~~l~~~f~~~~~ 212 (213)
T 3d54_D 151 -DDVNVVLRYVKDVNGSDERIAGVLNESGN-VFGLMPHPERAVEELIGGEDGKKVFQSILNYLK 212 (213)
T ss_dssp -SCCEEEEEESSCSSCCGGGEEEEECSSSC-EEEECSCSTTTTSTTTTCSTTSHHHHHHHHHCC
T ss_pred -CCCcEEEEEcCCCCCCccceeEEEcCCCC-EEEEeCCHHHhcCHhhhcCccHHHHHHHHHHhh
Confidence 378899999876 489999986655 999999999987 4689999999998763
No 20
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Probab=99.97 E-value=1.2e-31 Score=227.21 Aligned_cols=202 Identities=15% Similarity=0.218 Sum_probs=139.3
Q ss_pred CCCceEEEEECCCc-----------hhHHHHHHHHHcCCEEEEEeCCccCHHHHhcc--CCCEEEECCCCCCCCCcc---
Q 027062 22 NNKNPIIVIDNYDS-----------FTYNLCQYMGELGYHFEVYRNDELTVEELKRK--NPRGVLISPGPGAPQDSG--- 85 (229)
Q Consensus 22 ~~~~~ilvid~~~~-----------~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~--~~dgiii~GG~~~~~~~~--- 85 (229)
+.+..|.|...... ...+++++|+++|+++++++.+. +.++++.. ++|||||+||++++.+..
T Consensus 28 ~~~P~IGI~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~vv~~~~-~~~~i~~~l~~~dglil~GG~~~v~p~~~~~ 106 (315)
T 1l9x_A 28 AKKPIIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDL-TEKDYEILFKSINGILFPGGSVDLRRSDYAK 106 (315)
T ss_dssp CCCCEEEEECEECCSHHHHTTCSEEEEHHHHHHHHHTTCEEEEECSSC-CHHHHHHHHHHSSEEEECCCCCCTTTCHHHH
T ss_pred CCCCEEEEECCcccccccccCcceehHHHHHHHHHHCCCEEEEEecCC-CHHHHHHHHhcCCEEEEeCCCcccChhhhhH
Confidence 34567888844211 12468899999999999998753 34454332 679999999998876541
Q ss_pred ---hHHHHHHHh--CC-CCcEEEEehhHHHHHHHhCCeeeecCCccccCccceeEec-cCCCCcccccCCCce-------
Q 027062 86 ---ISLQTVLEL--GP-TVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYD-EKGEDGLLAGLSNPF------- 151 (229)
Q Consensus 86 ---~~~~~i~~~--~~-~~PvlGIC~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~-~~~~~~l~~~l~~~~------- 151 (229)
.+++.+++. .. ++||||||+|||+|+.++||++..... ..+|...++... ....++||+.++..+
T Consensus 107 ~~~~l~~~~~~~~~~g~~~PiLGIC~G~Qll~~a~GG~~~~~~~-~~~g~~~p~~~~~~~~~s~L~~~~~~~~~~~l~~~ 185 (315)
T 1l9x_A 107 VAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGECLLTAT-DTVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAVE 185 (315)
T ss_dssp HHHHHHHHHHHHHHTTCCCCEEEETHHHHHHHHHHHSSCCCEEE-EEEEEEECCEECSTTTTCSTTTTSCHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEChHHHHHHHHhCCccccccc-cccCCCCCeeeccCCCCChHHHhcChhhhhhcccc
Confidence 133444433 12 599999999999999999999765432 224432233322 123678998886432
Q ss_pred -eeeeeeceeeeccC-----CCCCCeEEEEEcCCCceEEE---EeCCCCcEEEEeccCCCCCC---C------------c
Q 027062 152 -TAGRYHSLVIEKES-----FPSDALEVTAWTEDGLIMAA---RHKKYKHLQGVQFHPESIIT---T------------E 207 (229)
Q Consensus 152 -~~~~~H~~~v~~~~-----l~~~~~~~la~~~~~~i~a~---~~~~~~~i~g~QfHPE~~~~---~------------~ 207 (229)
.++++|+++|+++. .++++++++|+++++.++++ ++++++ +||+|||||+..+ . .
T Consensus 186 ~~~~~~H~~~V~~~~~~~~~~l~~g~~v~A~s~dg~ve~i~~i~~~~~~-i~GVQfHPE~~~~e~~~~~~~p~s~~a~~~ 264 (315)
T 1l9x_A 186 PLTANFHKWSLSVKNFTMNEKLKKFFNVLTTNTDGKIEFISTMEGYKYP-VYGVQWHPEKAPYEWKNLDGISHAPNAVKT 264 (315)
T ss_dssp CCEEEEEEEECBHHHHHTCHHHHHHEEEEEEEESSSCEEEEEEEESSSC-EEEESSCTTHHHHCCSSCTTCCCCHHHHHH
T ss_pred ceEEEhhhhhcCccccccccccCCCCEEEEEcCCCCEEEEEEeccCCCC-EEEEEeCCCCCcccccccccCCccHHHHHH
Confidence 24459999997321 14578999999999886665 666666 9999999998531 1 3
Q ss_pred hHHHHHHHHHHHHHHhhhh
Q 027062 208 GKTIVRNFIKMIVRKEAAD 226 (229)
Q Consensus 208 ~~~i~~~f~~~~~~~~~~~ 226 (229)
+.+||++|++.++++++.+
T Consensus 265 ~~~lf~~Fv~~a~~~~~~f 283 (315)
T 1l9x_A 265 AFYLAEFFVNEARKNNHHF 283 (315)
T ss_dssp HHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHhccCCC
Confidence 6799999999998665554
No 21
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A
Probab=99.97 E-value=1.5e-30 Score=218.06 Aligned_cols=200 Identities=15% Similarity=0.118 Sum_probs=133.7
Q ss_pred CCceEEEE-EC-CCch-hHHHHHHHHHcCC----EEEEEeCCc--c-------CHHH-------HhccCCCEEEECCCCC
Q 027062 23 NKNPIIVI-DN-YDSF-TYNLCQYMGELGY----HFEVYRNDE--L-------TVEE-------LKRKNPRGVLISPGPG 79 (229)
Q Consensus 23 ~~~~ilvi-d~-~~~~-~~~~~~~l~~~g~----~~~v~~~~~--~-------~~~~-------l~~~~~dgiii~GG~~ 79 (229)
.+++|+|| |+ ..+. ..++.++|+++|+ ++.+...+. . +.++ +. ++|||||+||++
T Consensus 24 ~~~~Iavv~d~~~~~~s~~si~~~L~~~G~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~dgiil~GG~~ 101 (289)
T 2v4u_A 24 KICSIALVGKYTKLRDCYASVFKALEHSALAINHKLNLMYIDSIDLEKITETEDPVKFHEAWQKLC--KADGILVPGGFG 101 (289)
T ss_dssp EEEEEEEEESCSSCCGGGHHHHHHHHHHHHHTTEEEEEEEEEGGGGSHHHHHHCHHHHHHHHHHHH--HCSEEEECSCCS
T ss_pred CceEEEEEecCcCCCccHHHHHHHHHHhhhhhCCceEEEEechhhcccccccCChhhhhhHHHHHh--hCCEEEecCCCC
Confidence 35689999 76 3444 4588889988765 445544321 1 1122 33 579999999988
Q ss_pred CCCCcchHHHHHHH-hCCCCcEEEEehhHHHHHHHhCCeeeecC------Ccc-----------ccCc----------cc
Q 027062 80 APQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSP------LGV-----------MHGK----------SS 131 (229)
Q Consensus 80 ~~~~~~~~~~~i~~-~~~~~PvlGIC~G~Qlla~alGg~v~~~~------~~~-----------~~g~----------~~ 131 (229)
+... ....+.+++ ++.++||||||+|||+|+.++||++.... .+. .++. +.
T Consensus 102 ~~~~-~~~~~~i~~~~~~~~PilGIC~G~Q~l~~a~Gg~v~~~~~~~~~e~~~~~~~~~i~~~~~h~~~~~~~~~~~g~~ 180 (289)
T 2v4u_A 102 IRGT-LGKLQAISWARTKKIPFLGVXLGMQLAVIEFARNCLNLKDADSTEFRPNAPVPLVIDMPEHNPGNLGGTMRLGIR 180 (289)
T ss_dssp STTH-HHHHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHHSCCTTEEESTTCTTCSEEEEEECCBCCTTCSSCBCEEEEE
T ss_pred chhH-HHHHHHHHHHHHcCCcEEEECccHHHHHHHHhccccccccCcccccCccccccceecchhhcccccCCccccceE
Confidence 7433 223344443 35679999999999999999999985211 000 1111 12
Q ss_pred eeEeccCCCCcccccCCCceee--eeeeceeeeccCC--CC-CCeEEEEEcCCCc-eEEEEeCCCCcEEEEeccCCCCCC
Q 027062 132 LVYYDEKGEDGLLAGLSNPFTA--GRYHSLVIEKESF--PS-DALEVTAWTEDGL-IMAARHKKYKHLQGVQFHPESIIT 205 (229)
Q Consensus 132 ~~~~~~~~~~~l~~~l~~~~~~--~~~H~~~v~~~~l--~~-~~~~~la~~~~~~-i~a~~~~~~~~i~g~QfHPE~~~~ 205 (229)
.+.+.. ..+.+++.++..+.+ +++|++.|+++.+ ++ ++++++|+++++. ++|++++++|+++|+|||||+..+
T Consensus 181 ~v~~~~-~~s~l~~~~~~~~~v~~~H~H~y~vn~~~v~~l~~~g~~v~A~s~dg~~ieaie~~~~p~~lGvQfHPE~~~~ 259 (289)
T 2v4u_A 181 RTVFKT-ENSILRKLYGDVPFIEERHRHRFEVNPNLIKQFEQNDLSFVGQDVDGDRMEIIELANHPYFVGVQFHPEFSSR 259 (289)
T ss_dssp EEEESC-SCCHHHHHTTSCSEEEEEEEECEEECGGGSGGGTTSSEEEEEEETTSCSEEEEEESSSSCEEEESSBGGGGCB
T ss_pred EEEEec-CCCHHHHhcCCCceEEEecccccccCHHHHHhcccCCeEEEEEcCCCCeEEEEEcCCCCeEEEEECCCCCCCC
Confidence 333321 245566656543344 4556677765422 45 8999999999997 999999988866799999999876
Q ss_pred C-chHHHHHHHHHHHHHHhhhh
Q 027062 206 T-EGKTIVRNFIKMIVRKEAAD 226 (229)
Q Consensus 206 ~-~~~~i~~~f~~~~~~~~~~~ 226 (229)
+ .+.++|++|++.++++..+.
T Consensus 260 ~~~~~~lf~~Fv~~~~~~~~~~ 281 (289)
T 2v4u_A 260 PMKPSPPYLGLLLAATGNLNAY 281 (289)
T ss_dssp TTBCCHHHHHHHHHHHTCHHHH
T ss_pred CCchHHHHHHHHHHHHhhhhhh
Confidence 5 47899999999988765554
No 22
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}
Probab=99.97 E-value=4.7e-31 Score=219.42 Aligned_cols=197 Identities=19% Similarity=0.188 Sum_probs=131.0
Q ss_pred ceEEEEECC--------CchhHHHHHHHHHcCCEEEEEeCCccC--------H-HHHhccCCCEEEECCCCCCCCCcchH
Q 027062 25 NPIIVIDNY--------DSFTYNLCQYMGELGYHFEVYRNDELT--------V-EELKRKNPRGVLISPGPGAPQDSGIS 87 (229)
Q Consensus 25 ~~ilvid~~--------~~~~~~~~~~l~~~g~~~~v~~~~~~~--------~-~~l~~~~~dgiii~GG~~~~~~~~~~ 87 (229)
.+|+||..| +++..++.++..+.+.++.+++.+... . +.+. ++|||||+||++++...+ .
T Consensus 9 ~~Iaivg~y~~~~~dny~S~~~aL~~~g~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~--~~dgiil~GG~~~~~~~~-~ 85 (273)
T 2w7t_A 9 VRIAFVGKYLQDAGDTYFSVLQCFEHCQIALQVRLDILYVDSEELEGPNADEARKALL--GCDGIFVPGGFGNRGVDG-K 85 (273)
T ss_dssp EEEEEEECCHHHHTTTTHHHHHHHHHHHHHHTCCEEEEEEEGGGGSSTTTHHHHHHHH--TCSEEEECCCCTTTTHHH-H
T ss_pred CEEEEEeCCCcCCchHHHHHHHHHHHHHHhcCCceEEeccChhhcccccchhHHHHHh--hCCEEEecCCCCCcCchh-H
Confidence 678888333 233455666666778888887755321 1 2233 689999999988754332 2
Q ss_pred HHHHHH-hCCCCcEEEEehhHHHHHHHhCCeeeecC--Cccc--------------c----------CccceeEeccCCC
Q 027062 88 LQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSP--LGVM--------------H----------GKSSLVYYDEKGE 140 (229)
Q Consensus 88 ~~~i~~-~~~~~PvlGIC~G~Qlla~alGg~v~~~~--~~~~--------------~----------g~~~~~~~~~~~~ 140 (229)
+..++. ++.++|+||||+|||+|+.++||+|.... ...+ + ..+..+.+.. ..
T Consensus 86 ~~~i~~~~~~~~PilGIC~G~Qll~~a~Gg~v~~~~~~~s~E~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~v~~~~-~~ 164 (273)
T 2w7t_A 86 CAAAQVARMNNIPYFGVXLGMQVAVIELSRNVVGWSDANSEEFNKESTHQVVRIMDCDRNKMGANMHLGACDVYIVE-KS 164 (273)
T ss_dssp HHHHHHHHHHTCCEEEETHHHHHHHHHHHHHTTCCTTCEETTTCTTCSCEEEECCGGGBCSSCBCCEEEEEEEEECC-TT
T ss_pred HHHHHHHHHCCCcEEEECcCHHHHHHHHhCccccccCCchhhcccccCCCceeeccccccccCCcccccceEEEEec-CC
Confidence 333333 24569999999999999999999985211 0000 1 1122233221 14
Q ss_pred CcccccCCCceeeee--eeceeeeccCC--C-CCCeEEEEEcCC----C-ceEEEEeCCCCcEEEEeccCCCCCCCc-hH
Q 027062 141 DGLLAGLSNPFTAGR--YHSLVIEKESF--P-SDALEVTAWTED----G-LIMAARHKKYKHLQGVQFHPESIITTE-GK 209 (229)
Q Consensus 141 ~~l~~~l~~~~~~~~--~H~~~v~~~~l--~-~~~~~~la~~~~----~-~i~a~~~~~~~~i~g~QfHPE~~~~~~-~~ 209 (229)
+++++.++....+++ .|++.++++.+ + +++++++|++++ + .++|++++++|+++|+|||||++.++. +.
T Consensus 165 s~l~~~~~~~~~v~~~H~Hsy~v~~~~v~~l~~~g~~v~A~s~d~~~~g~~ieaie~~~~p~~~GvQfHPE~~~~~~~~~ 244 (273)
T 2w7t_A 165 SIMAKIYSKSNIVVERHRHRYEVNTAYFEDLRKAGLCISAVTDPTFSSRCRVEAVENPSLRFFLAVQFHPEFISTPMDPA 244 (273)
T ss_dssp SHHHHHTTTCSEEEEEEEECCEECGGGHHHHHHTTCEEEEESCTTCCTTCCEEEEECTTSSSEEEESSCGGGSCBTTBCC
T ss_pred cHHHHHhCCCceEEeecccccccCHHHHHhhccCCcEEEEEcCCcCCCCCeEEEEEcCCCCeEEEEeCCCCcCCCCCchH
Confidence 556665554444544 67888865311 3 578999999988 5 899999998886779999999987653 59
Q ss_pred HHHHHHHHHHHHHhhh
Q 027062 210 TIVRNFIKMIVRKEAA 225 (229)
Q Consensus 210 ~i~~~f~~~~~~~~~~ 225 (229)
+||+||++.+.++..+
T Consensus 245 ~l~~~Fv~~~~~~~~~ 260 (273)
T 2w7t_A 245 PTYLSFMAAAAKKDYV 260 (273)
T ss_dssp HHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999998865444
No 23
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=99.97 E-value=2.9e-31 Score=211.40 Aligned_cols=179 Identities=18% Similarity=0.151 Sum_probs=124.1
Q ss_pred ceEEEEECCCchhHHHHHHHHHcC-----CEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcch------HHHHHHH
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELG-----YHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGI------SLQTVLE 93 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g-----~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~------~~~~i~~ 93 (229)
|+|+|||+..++..++.++|+++| +++.+++..+ + .++|||||+|| +++.+... ..+.+++
T Consensus 1 m~I~iid~~~g~~~s~~~~l~~~G~~~~~~~~~~~~~~~----~---~~~dglilpG~-g~~~~~~~~l~~~~~~~~i~~ 72 (201)
T 1gpw_B 1 MRIGIISVGPGNIMNLYRGVKRASENFEDVSIELVESPR----N---DLYDLLFIPGV-GHFGEGMRRLRENDLIDFVRK 72 (201)
T ss_dssp CEEEEECCSSSCCHHHHHHHHHHSTTBSSCEEEEECSCC----S---SCCSEEEECCC-SCSHHHHHHHHHTTCHHHHHH
T ss_pred CEEEEEecCCchHHHHHHHHHHcCCCCCceEEEEECCCc----c---cCCCEEEECCC-CcHHHHHHHHHhhCHHHHHHH
Confidence 689999987677799999999999 9999887531 2 36899999774 44332211 2344444
Q ss_pred h-CCCCcEEEEehhHHHHHHHhC--CeeeecCCccccCccceeE---eccCCCCcccccCC-CceeeeeeeceeeeccCC
Q 027062 94 L-GPTVPLFGVCMGLQCIGEAFG--GKIVRSPLGVMHGKSSLVY---YDEKGEDGLLAGLS-NPFTAGRYHSLVIEKESF 166 (229)
Q Consensus 94 ~-~~~~PvlGIC~G~Qlla~alG--g~v~~~~~~~~~g~~~~~~---~~~~~~~~l~~~l~-~~~~~~~~H~~~v~~~~l 166 (229)
. ++++||||||+|||+|+.++| |+ .+.- +...+...... ......++++...+ ..+.++++|++.+.+
T Consensus 73 ~~~~~~PilGIC~G~Qll~~~~g~~G~-~~~l-~~~~g~v~~~~~~~~~~~g~~~l~~~~~~~~~~v~~~H~~~v~~--- 147 (201)
T 1gpw_B 73 HVEDERYVVGVCLGMQLLFEESEEAPG-VKGL-SLIEGNVVKLRSRRLPHMGWNEVIFKDTFPNGYYYFVHTYRAVC--- 147 (201)
T ss_dssp HHHTTCEEEEETHHHHTTSSEETTEEE-EECC-CSSSEEEEECCCSSCSEEEEEEEEESSSSCCEEEEEEESEEEEE---
T ss_pred HHHcCCeEEEEChhHHHHHHhhccCCC-CCCc-ceeeeEEEEcCCCCCCcccceeeEeccCCCCCeEEEECcceecc---
Confidence 3 567999999999999999997 33 1111 11111110000 00000123443344 568899999999985
Q ss_pred CCCCeEEEEEcCC-C-ceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHHHHH
Q 027062 167 PSDALEVTAWTED-G-LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVR 221 (229)
Q Consensus 167 ~~~~~~~la~~~~-~-~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~~~~ 221 (229)
+ +++++|++++ + .++|+++++ + ++|+|||||++ ++.+.+||++|++.+..
T Consensus 148 ~--~~~vla~s~~~g~~~~a~~~~~-~-i~gvQfHPE~~-~~~~~~l~~~f~~~~~~ 199 (201)
T 1gpw_B 148 E--EEHVLGTTEYDGEIFPSAVRKG-R-ILGFQFHPEKS-SKIGRKLLEKVIECSLS 199 (201)
T ss_dssp C--GGGEEEEEEETTEEEEEEEEET-T-EEEESSCGGGS-HHHHHHHHHHHHHHSSC
T ss_pred C--CCEEEEEEccCCceEEEEEECC-C-EEEEECCCccc-CHhHHHHHHHHHHHhhc
Confidence 3 6889999876 5 899999876 5 99999999998 66789999999987643
No 24
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=99.96 E-value=3e-29 Score=198.95 Aligned_cols=183 Identities=20% Similarity=0.305 Sum_probs=125.5
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc----hHHHHHHH-hCCCCc
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG----ISLQTVLE-LGPTVP 99 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~----~~~~~i~~-~~~~~P 99 (229)
|||+|||+.+++...+ ++|+++|+++.+++.. +++. ++|||||+||+.++++.. .+.+.+++ .++++|
T Consensus 2 m~I~il~~~~~~~~~~-~~l~~~g~~~~~~~~~----~~l~--~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~p 74 (196)
T 2nv0_A 2 LTIGVLGLQGAVREHI-HAIEACGAAGLVVKRP----EQLN--EVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGKP 74 (196)
T ss_dssp CEEEEECSSSCCHHHH-HHHHHTTCEEEEECSG----GGGG--GCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred cEEEEEEccCCcHHHH-HHHHHCCCEEEEeCCh----HHHh--hCCEEEECCCChhhHHHHhhhHHHHHHHHHHHHCCCc
Confidence 6899999877777665 8899999999888642 3444 579999999986554321 12344444 356899
Q ss_pred EEEEehhHHHHHHHhCCeeeecCCccccCccceeEec-c---CCCCcccccCCCceeeeeeeceeeeccCCCCCCeEEEE
Q 027062 100 LFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYD-E---KGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTA 175 (229)
Q Consensus 100 vlGIC~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~-~---~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~~~~la 175 (229)
+||||+|+|+|+.++||++.+.- +...+........ . ...+.++.++++++.++++|++.+.. ++++++++|
T Consensus 75 ilgIC~G~q~l~~~~gg~~~~~l-g~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~h~~~v~~---~~~~~~v~a 150 (196)
T 2nv0_A 75 MFGTCAGLIILAKEIAGSDNPHL-GLLNVVVERNSFGRQVDSFEADLTIKGLDEPFTGVFIRAPHILE---AGENVEVLS 150 (196)
T ss_dssp EEEETHHHHHHSBCCC----CCC-CCSCEEEECCCSCTTTSEEEEEECCTTCSSCEEEEEESCCEEEE---ECTTCEEEE
T ss_pred EEEECHHHHHHHHHhcCCCCCcc-cCCceeEeccCCCcccccccCCcccccCCCceEEEEEecceecc---cCCCcEEEE
Confidence 99999999999999999764322 1111110000000 0 00123455666788899999998865 467899999
Q ss_pred EcCCCceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHhhh
Q 027062 176 WTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKEAA 225 (229)
Q Consensus 176 ~~~~~~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~~~~~~~~ 225 (229)
++ ++.++|++++ +++|+|||||++.. ..++++|++.+++.+.+
T Consensus 151 ~~-d~~~~a~~~~---~~~gvQfHPE~~~~---~~l~~~fl~~~~~~~~~ 193 (196)
T 2nv0_A 151 EH-NGRIVAAKQG---QFLGCSFHPELTED---HRVTQLFVEMVEEYKQK 193 (196)
T ss_dssp EE-TTEEEEEEET---TEEEESSCTTSSSC---CHHHHHHHHHHHHHHHH
T ss_pred EE-CCEEEEEEEC---CEEEEEECCccCCc---hHHHHHHHHHHHhhhhh
Confidence 98 5788999874 49999999999632 48999999998765443
No 25
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=99.96 E-value=1.7e-29 Score=225.97 Aligned_cols=197 Identities=20% Similarity=0.188 Sum_probs=131.4
Q ss_pred eEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccC-----HHHHhccCCCEEEECCCCCCCCCcchHHHHHHH-hCCCCc
Q 027062 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELT-----VEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVP 99 (229)
Q Consensus 26 ~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~-----~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~P 99 (229)
.++++|+|.++..++.+++.+.|+++.+.+.+... .++.. .++|||||+||++++...+. +..++. +++++|
T Consensus 309 yv~l~D~y~Sv~~aL~~~g~~~g~~v~I~~~d~~~~~~~~~~~~L-~~~DGIILpGGfGd~~~~g~-i~~ir~a~e~~iP 386 (550)
T 1vco_A 309 YVKMPDAYLSLLEALRHAGIKNRARVEVKWVDAESLEAADLEEAF-RDVSGILVPGGFGVRGIEGK-VRAAQYARERKIP 386 (550)
T ss_dssp CC---CTTHHHHHHHHHHHHHTTEEEEEEEEEGGGC--CCHHHHT-TTCSCEEECCCCSSTTHHHH-HHHHHHHHHTTCC
T ss_pred eEEEEecHHHHHHHHHHHHHHcCCeEEEEEeCccccccchHHHHH-hcCCEEEECCCCCCcchhhh-HHHHHHHHHCCCc
Confidence 35677888888888988888899999988765321 21221 26899999999998765433 344433 346799
Q ss_pred EEEEehhHHHHHHHhCCeeeecCCc--ccc--Ccccee-Ee-cc-------------------CCCCcccccCCC--cee
Q 027062 100 LFGVCMGLQCIGEAFGGKIVRSPLG--VMH--GKSSLV-YY-DE-------------------KGEDGLLAGLSN--PFT 152 (229)
Q Consensus 100 vlGIC~G~Qlla~alGg~v~~~~~~--~~~--g~~~~~-~~-~~-------------------~~~~~l~~~l~~--~~~ 152 (229)
+||||+|||+|+.++||++.+.+.. .+. +..+++ .. .. ..+++++..+.. .+.
T Consensus 387 iLGICLGmQlL~~a~Gg~v~~l~~~~s~E~~~~~~hpvi~~~~~q~~i~~~ggtmrlG~~~v~i~~~s~l~~iy~~~~v~ 466 (550)
T 1vco_A 387 YLGICLGLQIAVIEFARNVAGLKGANSTEFDPHTPHPVIDLMPEQLEVEGLGGTMRLGDWPMRIKPGTLLHRLYGKEEVL 466 (550)
T ss_dssp EEEETHHHHHHHHHHHHHTSCCTTCEETTTCTTCSCEEEEESCGGGCC---CCCCEEEEEEEEECTTSHHHHHHCCSEEE
T ss_pred EEEECcCHHHHHHHhCcccccCCccccccccCCCCCCeEEeccccccccccCCcccccceEEEEccCchhhHhcCCceee
Confidence 9999999999999999998765421 011 111111 00 00 001223322211 122
Q ss_pred eeeeeceeeecc---CCCCCCeEEEEEcCCC------ceEEEEeCCCCcEEEEeccCCCCCCC-chHHHHHHHHHHHHHH
Q 027062 153 AGRYHSLVIEKE---SFPSDALEVTAWTEDG------LIMAARHKKYKHLQGVQFHPESIITT-EGKTIVRNFIKMIVRK 222 (229)
Q Consensus 153 ~~~~H~~~v~~~---~l~~~~~~~la~~~~~------~i~a~~~~~~~~i~g~QfHPE~~~~~-~~~~i~~~f~~~~~~~ 222 (229)
..+.|.|.|+.. .+++++++++|+++++ .+++++++++|.++|+|||||+..++ ++.+||++|++.+.++
T Consensus 467 e~h~H~Y~Vns~~~~~l~~~gl~v~a~s~dG~g~~~~~VeaIe~~~~p~fvGVQFHPE~~~~p~~g~~LF~~Fv~aa~~~ 546 (550)
T 1vco_A 467 ERHRHRYEVNPLYVDGLERAGLVVSATTPGMRGRGAGLVEAIELKDHPFFLGLQSHPEFKSRPMRPSPPFVGFVEAALAY 546 (550)
T ss_dssp EEEEESEEECHHHHHHHHHHTEEEEEECCCBTTBSTTCEEEEEETTSSSEEEESSCGGGGCBTTBCCHHHHHHHHHHHHH
T ss_pred eeccceEEEchHHhhccccCCeEEEEEeCCCCccCCCcEEEEEeCCCCEEEEEEeCCccCCCCCChHHHHHHHHHHHHhh
Confidence 467788888542 2223689999999884 89999999988444999999999877 4899999999998866
Q ss_pred hh
Q 027062 223 EA 224 (229)
Q Consensus 223 ~~ 224 (229)
+.
T Consensus 547 ~~ 548 (550)
T 1vco_A 547 QE 548 (550)
T ss_dssp TC
T ss_pred cc
Confidence 54
No 26
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=99.96 E-value=3.6e-29 Score=199.16 Aligned_cols=173 Identities=18% Similarity=0.222 Sum_probs=122.2
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCc------chHHHHHHH-hCC
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS------GISLQTVLE-LGP 96 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~------~~~~~~i~~-~~~ 96 (229)
+|+|+|||+..+...++.++|+++|+++.+++.+ ++++ ++|||||+|| +++.+. ....+.+++ .+.
T Consensus 2 ~~~I~iid~~~~~~~~~~~~l~~~G~~~~~~~~~----~~l~--~~d~lil~G~-g~~~~~~~~l~~~~~~~~i~~~~~~ 74 (200)
T 1ka9_H 2 RMKALLIDYGSGNLRSAAKALEAAGFSVAVAQDP----KAHE--EADLLVLPGQ-GHFGQVMRAFQESGFVERVRRHLER 74 (200)
T ss_dssp -CEEEEECSSCSCHHHHHHHHHHTTCEEEEESST----TSCS--SCSEEEECCC-SCHHHHHHTTSSSCTHHHHHHHHHT
T ss_pred ccEEEEEeCCCccHHHHHHHHHHCCCeEEEecCh----HHcc--cCCEEEECCC-CcHHHHHHHHHhcCHHHHHHHHHHc
Confidence 3689999986667788999999999999988743 2333 6899999763 333211 123445554 356
Q ss_pred CCcEEEEehhHHHHHHH---hC---------CeeeecC--CccccCccceeEeccCCCCcccccCCCceeeeeeeceeee
Q 027062 97 TVPLFGVCMGLQCIGEA---FG---------GKIVRSP--LGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIE 162 (229)
Q Consensus 97 ~~PvlGIC~G~Qlla~a---lG---------g~v~~~~--~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~ 162 (229)
++|+||||+|||+|+.+ +| |++.+.+ ...+.| +..+... + . |.++++ +.++++|++.+
T Consensus 75 ~~PilGIC~G~Qll~~~~~~~Gg~~~l~~~~g~v~~~~~~~~~~~G-~~~v~~~---~-~-l~~~~~-~~~~~~Hs~~~- 146 (200)
T 1ka9_H 75 GLPFLGICVGMQVLYEGSEEAPGVRGLGLVPGEVRRFRAGRVPQMG-WNALEFG---G-A-FAPLTG-RHFYFANSYYG- 146 (200)
T ss_dssp TCCEEECTHHHHTTSSEETTSTTCCCCCSSSSEEEECCSSSSSEEE-EEECEEC---G-G-GGGGTT-CEEEEEESEEC-
T ss_pred CCeEEEEcHHHHHHHHhccccCCcCCccccccEEEECCCCCCCcee-EEEEEec---h-h-hhcCCC-CCEEEeccccc-
Confidence 79999999999999999 68 6776654 122233 3334333 2 3 777776 88899999999
Q ss_pred ccCCCCCCeEEEEEcCC-C-ceEEEEeCCCCcEEEEeccCCCCCCCchHHHH---HHHHHHH
Q 027062 163 KESFPSDALEVTAWTED-G-LIMAARHKKYKHLQGVQFHPESIITTEGKTIV---RNFIKMI 219 (229)
Q Consensus 163 ~~~l~~~~~~~la~~~~-~-~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~---~~f~~~~ 219 (229)
+ ..++ .+ |++++ + .++++.+++ +++|+|||||++. +.+.+|| +||++.|
T Consensus 147 ~---~~~~-~v-a~s~~~g~~~~~~~~~~--~i~gvQfHPE~~~-~~g~~l~~~~~~F~~~~ 200 (200)
T 1ka9_H 147 P---LTPY-SL-GKGEYEGTPFTALLAKE--NLLAPQFHPEKSG-KAGLAFLALARRYFEVL 200 (200)
T ss_dssp C---CCTT-CC-EEEEETTEEEEEEEECS--SEEEESSCTTSSH-HHHHHHHHHHHHHC---
T ss_pred C---CCCC-cE-EEEEeCCeEEEEEEeeC--CEEEEecCCCcCc-cchhHHHHHHHHHHhhC
Confidence 5 2333 45 87776 5 788888876 4999999999984 6789999 9998754
No 27
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=99.95 E-value=3.1e-29 Score=224.05 Aligned_cols=192 Identities=18% Similarity=0.231 Sum_probs=122.9
Q ss_pred ECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHh------ccCCCEEEECCCCCCCCCcchHHHHHHH-hCCCCcEEEE
Q 027062 31 DNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELK------RKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGV 103 (229)
Q Consensus 31 d~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~------~~~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PvlGI 103 (229)
|+++++.+++.++....|.++.+.+.+ .+++. ..++|||||+||++++...+. ...++. +++++|+|||
T Consensus 303 D~y~Si~~aL~~~G~~~~~~V~i~~~d---~e~i~~~~~~~l~~~DGIilsGGpg~~~~~g~-~~~i~~a~~~~~PiLGI 378 (545)
T 1s1m_A 303 DAYKSVIEALKHGGLKNRVSVNIKLID---SQDVETRGVEILKGLDAILVPGGFGYRGVEGM-ITTARFARENNIPYLGI 378 (545)
T ss_dssp GGGHHHHHHHHHHHHHHTEEEEEEEEE---HHHHHHHCTTTTTTCSEEEECCCCSSTTHHHH-HHHHHHHHHTTCCEEEE
T ss_pred EHHHHHHHHHHHhCcccCCeEEEccCC---HHHhhhhhhhhhhcCCEEEECCCCCCccchhh-HHHHHHHHHCCCcEEEE
Confidence 333333444444433445567777654 22322 126899999999998764332 333332 3467999999
Q ss_pred ehhHHHHHHHhCCeeeecCCc--ccc--CccceeEe-c------------------------------cCCCCcccccCC
Q 027062 104 CMGLQCIGEAFGGKIVRSPLG--VMH--GKSSLVYY-D------------------------------EKGEDGLLAGLS 148 (229)
Q Consensus 104 C~G~Qlla~alGg~v~~~~~~--~~~--g~~~~~~~-~------------------------------~~~~~~l~~~l~ 148 (229)
|+|||+|+.++||++...+.+ .+. +..+++.. . ...++.++..+.
T Consensus 379 ClG~Qll~va~Gg~v~~l~~a~s~E~~~~~~hpvi~l~~~w~~~~g~~~~q~~~~~~ggtmrlG~~~v~l~~~s~l~~iy 458 (545)
T 1s1m_A 379 CLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLY 458 (545)
T ss_dssp THHHHHHHHHHHHHHHCCTTCEETTTCSSCSCEEEECTTTCCCTTSCCC----------CCEEEEEEEEECTTCHHHHHT
T ss_pred CChHHHHHHHhCCceecCCCCcccccCCCCCCceEEeecccccccccccccccccccCccccccceeeEeccCCHHHHhc
Confidence 999999999999999865421 111 11111100 0 000122222222
Q ss_pred Cc--eeeeeeeceeeecc---CCCCCCeEEEEEcCCC-ceEEEEeCCCCcEEEEeccCCCCCCCc-hHHHHHHHHHHHHH
Q 027062 149 NP--FTAGRYHSLVIEKE---SFPSDALEVTAWTEDG-LIMAARHKKYKHLQGVQFHPESIITTE-GKTIVRNFIKMIVR 221 (229)
Q Consensus 149 ~~--~~~~~~H~~~v~~~---~l~~~~~~~la~~~~~-~i~a~~~~~~~~i~g~QfHPE~~~~~~-~~~i~~~f~~~~~~ 221 (229)
.. +...+.|.+.|+.. .+.+++++++|+++++ .+++++++++|+++|+|||||+..++. +.+||++|++.+.+
T Consensus 459 g~~~v~e~h~Hry~VNs~~~~~l~~~gl~v~a~s~dg~~VEaie~~~~p~flGVQFHPE~~~~p~~g~~LF~~Fv~aa~~ 538 (545)
T 1s1m_A 459 NAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASE 538 (545)
T ss_dssp TSSEEEEEEEECCEECHHHHHHHHHTTCEEEEECSSSCCEEEEECTTSSSEEEESSCGGGTCCTTTCCHHHHHHHHHHHH
T ss_pred CCceEEEecCcceEEChHHhhhcccCCeEEEEECCCCCceEEEEeCCCCEEEEEeCCCCCCCCCCChHHHHHHHHHHHHH
Confidence 22 23456777777542 1224799999999998 899999999885569999999998774 89999999999987
Q ss_pred Hhhhh
Q 027062 222 KEAAD 226 (229)
Q Consensus 222 ~~~~~ 226 (229)
++.+.
T Consensus 539 ~~~~~ 543 (545)
T 1s1m_A 539 FQKRQ 543 (545)
T ss_dssp HHHHC
T ss_pred HHhhh
Confidence 66544
No 28
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=99.95 E-value=6.7e-29 Score=200.35 Aligned_cols=184 Identities=18% Similarity=0.257 Sum_probs=127.2
Q ss_pred CCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc----hHHHHHHH-hCC
Q 027062 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG----ISLQTVLE-LGP 96 (229)
Q Consensus 22 ~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~----~~~~~i~~-~~~ 96 (229)
.++++|+|+++.+.|.. +.++|+++|+++.+++.. ++++ ++|||||+||+....+.. ...+.+++ .++
T Consensus 21 ~~~~~I~il~~~~~~~~-~~~~l~~~G~~~~~~~~~----~~l~--~~Dglil~GG~~~~~~~~~~~~~~~~~i~~~~~~ 93 (219)
T 1q7r_A 21 QSNMKIGVLGLQGAVRE-HVRAIEACGAEAVIVKKS----EQLE--GLDGLVLPGGESTTMRRLIDRYGLMEPLKQFAAA 93 (219)
T ss_dssp CCCCEEEEESCGGGCHH-HHHHHHHTTCEEEEECSG----GGGT--TCSEEEECCCCHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCCEEEEEeCCCCcHH-HHHHHHHCCCEEEEECCH----HHHh--hCCEEEECCCChHHHHHHhhhhHHHHHHHHHHHc
Confidence 34689999998666654 458899999999988752 3444 679999999986543221 12344444 356
Q ss_pred CCcEEEEehhHHHHHHHhCCeeeecCCccccCcccee----EeccCCCCcccccCCCceeeeeeeceeeeccCCCCCCeE
Q 027062 97 TVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLV----YYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALE 172 (229)
Q Consensus 97 ~~PvlGIC~G~Qlla~alGg~v~~~~~~~~~g~~~~~----~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~~~~ 172 (229)
++||||||+|||+|+.++||++.+.- +...+..... .......+..+.+++..+.++++|++.+.. ++++++
T Consensus 94 ~~PilGIC~G~QlL~~~~gg~~~~~l-g~~~~~~~~~~~g~~~~~~~~~~~~~g~g~~~~~~~~h~~~v~~---l~~~~~ 169 (219)
T 1q7r_A 94 GKPMFGTCAGLILLAKRIVGYDEPHL-GLMDITVERNSFGRQRESFEAELSIKGVGDGFVGVFIRAPHIVE---AGDGVD 169 (219)
T ss_dssp TCCEEEETTHHHHHEEEEESSCCCCC-CCEEEEEECHHHHCCCCCEEEEEEETTTEEEEEEEESSCCEEEE---ECTTCE
T ss_pred CCeEEEECHHHHHHHHHhCCCCcCCc-CccceEEEecCCCccccceecCcccCCCCCceEEEEEecceeec---cCCCcE
Confidence 89999999999999999999874322 1111000000 000000112345555578888999998875 468999
Q ss_pred EEEEcCCCceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHh
Q 027062 173 VTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKE 223 (229)
Q Consensus 173 ~la~~~~~~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~~~~~~ 223 (229)
++|++ ++.++|++++ +++|+|||||++.. ..++++|++.+.+++
T Consensus 170 v~a~s-dg~~ea~~~~---~i~GvQfHPE~~~~---~~l~~~fl~~~~~~~ 213 (219)
T 1q7r_A 170 VLATY-NDRIVAARQG---QFLGCSFHPELTDD---HRLMQYFLNMVKEAK 213 (219)
T ss_dssp EEEEE-TTEEEEEEET---TEEEESSCGGGSSC---CHHHHHHHHHHHHHH
T ss_pred EEEEc-CCEEEEEEEC---CEEEEEECcccCCC---HHHHHHHHHHHHHhh
Confidence 99998 6889999984 49999999999632 589999999987643
No 29
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=99.95 E-value=6.4e-28 Score=212.65 Aligned_cols=193 Identities=17% Similarity=0.261 Sum_probs=127.3
Q ss_pred CCceEEEEECCCch-------hHHHHHHHHHcCCEEEEEeCCccCH--------HHHhccCCCEEEECCCCCCCCCcchH
Q 027062 23 NKNPIIVIDNYDSF-------TYNLCQYMGELGYHFEVYRNDELTV--------EELKRKNPRGVLISPGPGAPQDSGIS 87 (229)
Q Consensus 23 ~~~~ilvid~~~~~-------~~~~~~~l~~~g~~~~v~~~~~~~~--------~~l~~~~~dgiii~GG~~~~~~~~~~ 87 (229)
...+|++|.-|... ..++.++..+.+.++.+.+.+.... +.+. ++|||||+||++.+...+.
T Consensus 292 ~~v~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~V~I~wIds~~l~~~~~~~~~~L~--~~DgIIlpGG~G~~~~~g~- 368 (535)
T 3nva_A 292 KTINIALVGKYTKLKDSYISIKEAIYHASAYIGVRPKLIWIESTDLESDTKNLNEILG--NVNGIIVLPGFGSRGAEGK- 368 (535)
T ss_dssp CEEEEEEEESCTTSGGGGHHHHHHHHHHHHHTTCEEEEEEEEGGGGCCSSSCCTTTTT--SCSEEEECCCCSSTTHHHH-
T ss_pred CeeEEEEEecCcCCchhHHHHHHHHHHHHHHcCCCeEEEEecchhccccccchhhhcc--CCCEEEECCCCCCccHHHH-
Confidence 35689999776332 3445555556677888766442211 2232 6899999999987643332
Q ss_pred HHHHHH-hCCCCcEEEEehhHHHHHHHhCCeeeecCC--cccc---------------------C-----ccceeEeccC
Q 027062 88 LQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPL--GVMH---------------------G-----KSSLVYYDEK 138 (229)
Q Consensus 88 ~~~i~~-~~~~~PvlGIC~G~Qlla~alGg~v~~~~~--~~~~---------------------g-----~~~~~~~~~~ 138 (229)
+..++. +++++|+||||+|||+|+.++||++..... ..+. | ..+.+.+.
T Consensus 369 i~~ir~a~~~~~PiLGIClG~Qll~va~Gg~v~g~qda~s~Ef~~~~~~pvI~~m~eq~~~~~~ggtmrlg~h~v~l~-- 446 (535)
T 3nva_A 369 IKAIKYAREHNIPFLGICFGFQLSIVEFARDVLGLSEANSTEINPNTKDPVITLLDEQKNVTQLGGTMRLGAQKIILK-- 446 (535)
T ss_dssp HHHHHHHHHHTCCEEEETHHHHHHHHHHHHTTTCCTTCEETTTCTTCSCEEEECBCSSSCBCSSCCCCEEEEEEEEEC--
T ss_pred HHHHHHHHHcCCcEEEECcchhHHHHHhhccccCccCCcccccCCCCCCCeeecchhcccccccCCccccCceEEEEc--
Confidence 334433 456799999999999999999999953210 0000 0 01112221
Q ss_pred CCCcccccCC-Cceeeeeeeceeeecc---CCCCCCeEEEEEcCCCceEEEEeCCCCcEEEEeccCCCCCCC-chHHHHH
Q 027062 139 GEDGLLAGLS-NPFTAGRYHSLVIEKE---SFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITT-EGKTIVR 213 (229)
Q Consensus 139 ~~~~l~~~l~-~~~~~~~~H~~~v~~~---~l~~~~~~~la~~~~~~i~a~~~~~~~~i~g~QfHPE~~~~~-~~~~i~~ 213 (229)
..+.+.+-+. ..+...+.|++.|++. .+.+++++++|+++|+.++|++++++|+++|+|||||+..++ .+.++|+
T Consensus 447 ~gS~L~~iyG~~~I~erHrHryeVNs~h~q~l~~~GL~vsA~s~DG~IEAIE~~~~pf~vGVQfHPE~~~~p~~~~~LF~ 526 (535)
T 3nva_A 447 EGTIAYQLYGKKVVYERHRHRYEVNPKYVDILEDAGLVVSGISENGLVEIIELPSNKFFVATQAHPEFKSRPTNPSPIYL 526 (535)
T ss_dssp TTSHHHHHHTSSEEEEEEEECCEECHHHHHHHHHTTCEEEEECTTCCEEEEECTTSSCEEEESSCGGGGCCSSSCCHHHH
T ss_pred CCCcHHHHhCCCeeeecccccceechHHHhhcccCCeEEEEEeCCCCEEEEEeCCCCcEEEEEeCCEecCCCCChhHHHH
Confidence 1222332222 2344556677777541 233579999999999999999999998789999999998776 5899999
Q ss_pred HHHHHHH
Q 027062 214 NFIKMIV 220 (229)
Q Consensus 214 ~f~~~~~ 220 (229)
+|++++.
T Consensus 527 ~Fv~Aa~ 533 (535)
T 3nva_A 527 GFIRAVA 533 (535)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 9999874
No 30
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=99.94 E-value=1.3e-27 Score=191.23 Aligned_cols=178 Identities=17% Similarity=0.241 Sum_probs=118.3
Q ss_pred ccCCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc----hHHHHHHH-h
Q 027062 20 SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG----ISLQTVLE-L 94 (229)
Q Consensus 20 ~~~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~----~~~~~i~~-~ 94 (229)
....+++|+|||+ ......+.++|+++|+++.+++.. +++. ++|+|||+||+...++.. .+.+.+++ .
T Consensus 16 ~~~~~~~I~ii~~-~~~~~~~~~~l~~~g~~~~~~~~~----~~l~--~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~ 88 (208)
T 2iss_D 16 PRGSHMKIGVLGV-QGDVREHVEALHKLGVETLIVKLP----EQLD--MVDGLILPGGESTTMIRILKEMDMDEKLVERI 88 (208)
T ss_dssp ----CCEEEEECS-SSCHHHHHHHHHHTTCEEEEECSG----GGGG--GCSEEEECSSCHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCCcEEEEEEC-CCchHHHHHHHHHCCCEEEEeCCh----HHHh--hCCEEEECCCcHHHHHhhhhhhhHHHHHHHHH
Confidence 3445689999996 445556778899999999888642 3454 579999999854332211 12344554 3
Q ss_pred CCCCcEEEEehhHHHHHHHhCCeeeecCCccc--------cCccceeEeccCCCCcccccCC-CceeeeeeeceeeeccC
Q 027062 95 GPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVM--------HGKSSLVYYDEKGEDGLLAGLS-NPFTAGRYHSLVIEKES 165 (229)
Q Consensus 95 ~~~~PvlGIC~G~Qlla~alGg~v~~~~~~~~--------~g~~~~~~~~~~~~~~l~~~l~-~~~~~~~~H~~~v~~~~ 165 (229)
++++|+||||+|||+|+.++||...+.- +.. .|..... .. .+..+.+++ +++.++++|++.+..
T Consensus 89 ~~g~PilGIC~G~QlL~~~~gg~~~~~l-g~~~~~v~~~~~g~~~~~-~~---~~~~~~~~~~~~~~~~~~h~~~v~~-- 161 (208)
T 2iss_D 89 NNGLPVFATCAGVILLAKRIKNYSQEKL-GVLDITVERNAYGRQVES-FE---TFVEIPAVGKDPFRAIFIRAPRIVE-- 161 (208)
T ss_dssp HTTCCEEEETHHHHHHEEEEC---CCCC-CCEEEEEETTTTCSGGGC-EE---EEECCGGGCSSCEEEEESSCCEEEE--
T ss_pred HCCCeEEEECHHHHHHHHHcCCCCCCCc-cccceEEEecCCCccccc-cc---CCcccccCCCCceEEEEEeCccccc--
Confidence 5689999999999999999999532211 110 1100000 00 123445554 578899999998875
Q ss_pred CCCCCeEEEEEcCCCceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHHH
Q 027062 166 FPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI 219 (229)
Q Consensus 166 l~~~~~~~la~~~~~~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~~ 219 (229)
++++++++|++ ++.+++++.+ + ++|+|||||+... ..++++|++.+
T Consensus 162 -~~~~~~v~a~~-d~~~~a~~~~--~-i~GvQfHPE~~~~---~~l~~~fl~~~ 207 (208)
T 2iss_D 162 -TGKNVEILATY-DYDPVLVKEG--N-ILACTFHPELTDD---LRLHRYFLEMV 207 (208)
T ss_dssp -ECSSCEEEEEE-TTEEEEEEET--T-EEEESSCGGGSSC---CHHHHHHHTTC
T ss_pred -CCCCcEEEEEE-CCEEEEEEEC--C-EEEEEeCCCcCCc---HHHHHHHHHHh
Confidence 46789999998 5889999874 4 9999999999743 38999999754
No 31
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=99.94 E-value=7e-27 Score=184.42 Aligned_cols=174 Identities=19% Similarity=0.264 Sum_probs=118.3
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCc----chHHHHHHH-hCCC-
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS----GISLQTVLE-LGPT- 97 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~----~~~~~~i~~-~~~~- 97 (229)
+++|.|+...+ ...++.++|+++|+++.+++.. ++++ ++|||||+||+....+. ..+.+.+++ .+++
T Consensus 2 ~p~Igi~~~~~-~~~~~~~~l~~~G~~~~~~~~~----~~l~--~~dglil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~ 74 (191)
T 2ywd_A 2 RGVVGVLALQG-DFREHKEALKRLGIEAKEVRKK----EHLE--GLKALIVPGGESTTIGKLAREYGIEDEVRKRVEEGS 74 (191)
T ss_dssp -CCEEEECSSS-CHHHHHHHHHTTTCCCEEECSG----GGGT--TCSEEEECSSCHHHHHHHHHHTTHHHHHHHHHHTTC
T ss_pred CcEEEEEecCC-chHHHHHHHHHCCCEEEEeCCh----hhhc--cCCEEEECCCChhhhHHhhhhhhHHHHHHHHHHCCC
Confidence 56899997643 4457889999999999988743 2444 57999999995321111 123344544 3467
Q ss_pred CcEEEEehhHHHHHHHhCC-eeeecCCccccCcc-------ceeEeccCCCCcccccCCCceeeeeeeceeeeccCCCCC
Q 027062 98 VPLFGVCMGLQCIGEAFGG-KIVRSPLGVMHGKS-------SLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSD 169 (229)
Q Consensus 98 ~PvlGIC~G~Qlla~alGg-~v~~~~~~~~~g~~-------~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~v~~~~l~~~ 169 (229)
+||||||+|||+|+.++|| ++...- +...+.. ...... .+..+.++ ..+.++++|++.+.. +++
T Consensus 75 ~PilGiC~G~Q~l~~~~gg~~~~~~l-g~~~~~~~~~~~g~~~~~~~---~~~~~~~~-~~~~~~~~Hs~~v~~---l~~ 146 (191)
T 2ywd_A 75 LALFGTCAGAIWLAKEIVGYPEQPRL-GVLEAWVERNAFGRQVESFE---EDLEVEGL-GSFHGVFIRAPVFRR---LGE 146 (191)
T ss_dssp CEEEEETHHHHHHEEEETTCTTCCCC-CCEEEEEETTCSCCSSSEEE---EEEEETTT-EEEEEEEESCCEEEE---ECT
T ss_pred CeEEEECHHHHHHHHHhCCCCCCccc-cccceEEEcCCcCCcccccc---ccccccCC-CceeEEEEcccceec---cCC
Confidence 9999999999999999998 543221 1111100 000000 01233444 567788899998864 467
Q ss_pred CeEEEEEcCCCceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHHH
Q 027062 170 ALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI 219 (229)
Q Consensus 170 ~~~~la~~~~~~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~~ 219 (229)
+++++|++ ++.+++++++ +++|+|||||++. ++ .+|++|++.+
T Consensus 147 ~~~~~a~~-~~~~~a~~~~---~~~gvQfHPE~~~--~~-~l~~~f~~~~ 189 (191)
T 2ywd_A 147 GVEVLARL-GDLPVLVRQG---KVLASSFHPELTE--DP-RLHRYFLELA 189 (191)
T ss_dssp TCEEEEEE-TTEEEEEEET---TEEEESSCGGGSS--CC-HHHHHHHHHH
T ss_pred CcEEEEEE-CCEEEEEEEC---CEEEEEeCCCCCC--Cc-HHHHHHHHHh
Confidence 89999998 5889999986 3999999999863 34 9999999876
No 32
>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G
Probab=99.92 E-value=1.4e-25 Score=181.70 Aligned_cols=186 Identities=17% Similarity=0.176 Sum_probs=125.1
Q ss_pred CCceEEEEECCCchhHHHHHHHHHc---CCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCc------chHHHHHHH
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGEL---GYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS------GISLQTVLE 93 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~---g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~------~~~~~~i~~ 93 (229)
++++|.|++..+.+ ..+.++|+++ |+++.+++. .+++. ++|||||+||+.+..+. ..+.+.+++
T Consensus 2 ~~~~I~Il~~~~~~-~~~~~~l~~~~~~G~~~~~~~~----~~~l~--~~dglil~GG~~~~~~~~~~~d~~~~~~~i~~ 74 (227)
T 2abw_A 2 SEITIGVLSLQGDF-EPHINHFIKLQIPSLNIIQVRN----VHDLG--LCDGLVIPGGESTTVRRCCAYENDTLYNALVH 74 (227)
T ss_dssp CCEEEEEECTTSCC-HHHHHHHHTTCCTTEEEEEECS----HHHHH--TCSEEEECCSCHHHHHHHTTHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCc-HHHHHHHHHhccCCeEEEEEcC----ccccc--cCCEEEECCCcHHHHHHHHHHhHHHHHHHHHH
Confidence 56789999876555 4578889998 988887763 25565 57999999997543221 123444544
Q ss_pred -hCC-CCcEEEEehhHHHHHHHhCCeeeecC--CccccCccceeEeccCC---------CCcccccC----CCceeeeee
Q 027062 94 -LGP-TVPLFGVCMGLQCIGEAFGGKIVRSP--LGVMHGKSSLVYYDEKG---------EDGLLAGL----SNPFTAGRY 156 (229)
Q Consensus 94 -~~~-~~PvlGIC~G~Qlla~alGg~v~~~~--~~~~~g~~~~~~~~~~~---------~~~l~~~l----~~~~~~~~~ 156 (229)
.+. ++||||||+|||+|+.++||++.... .....|.. ++.+.... .+..+.++ +..+..++.
T Consensus 75 ~~~~~g~PilGIC~G~QlL~~~~gg~~~~~~~~~~~~lG~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 153 (227)
T 2abw_A 75 FIHVLKKPIWGTCAGCILLSKNVENIKLYSNFGNKFSFGGL-DITICRNFYGSQNDSFICSLNIISDSSAFKKDLTAACI 153 (227)
T ss_dssp HHHTSCCCEEEETHHHHHTEEEEECCCSCCTTGGGSCCCCE-EEEEECCC----CCEEEEECEECCCCTTCCTTCEEEEE
T ss_pred HHHhcCCEEEEECHHHHHHHHHhcCCccccccccccccCce-eEEEEecCCCccccccccccccccccccCCCceeEEEE
Confidence 356 79999999999999999999863321 01122221 11111000 01122333 356777778
Q ss_pred eceeeeccCCC-CCCeEEEEEcC-----CCceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHhhh
Q 027062 157 HSLVIEKESFP-SDALEVTAWTE-----DGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKEAA 225 (229)
Q Consensus 157 H~~~v~~~~l~-~~~~~~la~~~-----~~~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~~~~~~~~ 225 (229)
|++.+.. + +++++++|+++ ++.++|++.+ +++|+|||||++.. ..++++|++.++....+
T Consensus 154 h~~~v~~---~~~~~~~vla~~~~~~~g~~~~~a~~~~---~v~gvQfHPE~~~~---~~l~~~Fl~~~~~~~~~ 219 (227)
T 2abw_A 154 RAPYIRE---ILSDEVKVLATFSHESYGPNIIAAVEQN---NCLGTVFHPELLPH---TAFQQYFYEKVKNYKYS 219 (227)
T ss_dssp SCCEEEE---ECCTTCEEEEEEEETTTEEEEEEEEEET---TEEEESSCGGGSSC---CHHHHHHHHHHHHHHHH
T ss_pred EcceEee---cCCCCcEEEEEcccccCCCCceEEEEEC---CEEEEEECCeeCCC---cHHHHHHHHHHHhhhcc
Confidence 8888864 3 67899999986 5788899864 49999999999742 48999999998765544
No 33
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=99.92 E-value=2.6e-26 Score=207.71 Aligned_cols=181 Identities=19% Similarity=0.166 Sum_probs=126.4
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc------hHHHHHHH-hCC
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG------ISLQTVLE-LGP 96 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~------~~~~~i~~-~~~ 96 (229)
+++|+|||+..++..++.++|+++|+++.+++..+. ..+. ++|||||+||. ++.... ...+.+++ ++.
T Consensus 4 m~~I~Iid~~~g~~~~~~~~l~~~G~~~~vv~~~~~--~~l~--~~DglILpGgG-~~~~~~~~l~~~~~~~~i~~~~~~ 78 (555)
T 1jvn_A 4 MPVVHVIDVESGNLQSLTNAIEHLGYEVQLVKSPKD--FNIS--GTSRLILPGVG-NYGHFVDNLFNRGFEKPIREYIES 78 (555)
T ss_dssp SCEEEEECCSCSCCHHHHHHHHHTTCEEEEESSGGG--CCST--TCSCEEEEECS-CHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CCEEEEEECCCCCHHHHHHHHHHCCCEEEEECCccc--cccc--cCCEEEECCCC-chHhHhhhhhhccHHHHHHHHHHc
Confidence 368999998667888999999999999998874311 1133 68999998742 221111 12344443 356
Q ss_pred CCcEEEEehhHHHHHHHh------------CCeeeecCC----ccccCccceeEeccCCCCcccccCCCceeeeeeecee
Q 027062 97 TVPLFGVCMGLQCIGEAF------------GGKIVRSPL----GVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLV 160 (229)
Q Consensus 97 ~~PvlGIC~G~Qlla~al------------Gg~v~~~~~----~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~~~ 160 (229)
++|+||||+|||+|+.++ ||++.+.+. ..++| |+.+.. . ++||++++..+.++++|++.
T Consensus 79 g~PiLGIC~G~QlL~~a~~egg~~~~Lg~lgg~v~~~~~~~~~~~~~G-~~~v~~---~-~~L~~~l~~~~~~~~vHS~~ 153 (555)
T 1jvn_A 79 GKPIMGIXVGLQALFAGSVESPKSTGLNYIDFKLSRFDDSEKPVPEIG-WNSCIP---S-ENLFFGLDPYKRYYFVHSFA 153 (555)
T ss_dssp TCCEEEEEHHHHTTEEEETTBTTCCCCCSEEEEEEECCTTTSCSSEEE-EECCCC---C-TTCCTTCCTTSCEEEEESEE
T ss_pred CCcEEEEchhhhhhhhhhhcCCCccccCCCCcEEEECCcCCCCCcccc-ceEEEE---c-CHHHhhCCCCceEEEEEEEE
Confidence 799999999999999998 677776531 11223 222222 1 78999988777788888888
Q ss_pred eeccC----CCCCCeEEEEEcC---CCceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHH
Q 027062 161 IEKES----FPSDALEVTAWTE---DGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 218 (229)
Q Consensus 161 v~~~~----l~~~~~~~la~~~---~~~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~ 218 (229)
+.... ++++++.++|+++ ++.+++++.. ++||+|||||++ .+.|..||++|++.
T Consensus 154 ~~~i~~~~~~L~~g~~vlA~s~~~~D~~i~ai~~~---~i~GvQFHPE~s-~~~g~~l~~~Fl~~ 214 (555)
T 1jvn_A 154 AILNSEKKKNLENDGWKIAKAKYGSEEFIAAVNKN---NIFATQFHPEKS-GKAGLNVIENFLKQ 214 (555)
T ss_dssp CBCCHHHHHHHHHTTCEEEEEEETTEEEEEEEEET---TEEEESSBGGGS-HHHHHHHHHHHHTT
T ss_pred EEecccccccCCCCCEEEEEEcCCCCCeEEEEEeC---CEEEEEeCcEec-ChhHHHHHHHHHhc
Confidence 75311 1135678888876 4578999853 499999999986 35688999999975
No 34
>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}
Probab=99.91 E-value=4.2e-24 Score=179.08 Aligned_cols=190 Identities=16% Similarity=0.103 Sum_probs=124.1
Q ss_pred CCceEEEEECCCc---hhHHHHHHHHHcCCEEEE--EeCCc-c--------------CHHHHhccCCCEEEECCCCCCCC
Q 027062 23 NKNPIIVIDNYDS---FTYNLCQYMGELGYHFEV--YRNDE-L--------------TVEELKRKNPRGVLISPGPGAPQ 82 (229)
Q Consensus 23 ~~~~ilvid~~~~---~~~~~~~~l~~~g~~~~v--~~~~~-~--------------~~~~l~~~~~dgiii~GG~~~~~ 82 (229)
..+||+||+.-.. +...+.+.|...+.++++ +.... . +.++++..+|||+||+|||....
T Consensus 46 rplkI~ILnlmp~k~~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGsP~~~~ 125 (312)
T 2h2w_A 46 RPLEILILNLMPDKIKTEIQLLRLLGNTPLQVNVTLLYTETHKPKHTPIEHILKFYTTFSAVKDRKFDGFIITGAPVELL 125 (312)
T ss_dssp CCEEEEEECCCSSHHHHHHHHHHHHHSSSSCEEEEEECCSCCCCCSSCHHHHHHHCBCGGGTTTCCEEEEEECCCSCTTS
T ss_pred CCceEEEEeCCCCcCchHHHHHHHhcCCCCcEEEEEEEccCCCCCCccHHHHhhccCCcccccccCcCEEEECCCCCCCC
Confidence 4589999987443 345677888776666655 33221 1 23333334789999999997654
Q ss_pred C--c-chHH---HHHHH-hCCCCcEEEEehhHHHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCceeeee
Q 027062 83 D--S-GISL---QTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGR 155 (229)
Q Consensus 83 ~--~-~~~~---~~i~~-~~~~~PvlGIC~G~Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~ 155 (229)
+ + ..|. +.++. ..+++|+||||+|+|+++.++||.......+.+.|.. .+.+.. .++|+.+++..|.+.+
T Consensus 126 ~~ed~~yw~el~~li~~~~~~~~p~LGIC~GaQ~~l~~~~G~~k~~~~~K~~Gv~-~~~~~~--~~pL~~g~~~~f~vph 202 (312)
T 2h2w_A 126 PFEEVDYWEELTEIMEWSRHNVYSTMFICWAAQAGLYYFYGIPKYELPQKLSGVY-KHRVAK--DSVLFRGHDDFFWAPH 202 (312)
T ss_dssp CGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEEEEEEEEEE-EEEESS--CCGGGTTCCSEEEEEE
T ss_pred CCccCchHHHHHHHHHHHHHcCCcEEEECHHHHHHHHHhCCCccccCCCCEEEEE-EEEEcC--CCccccCCCCceEeeE
Confidence 3 2 2232 12222 2467999999999999777777733322223345543 334443 7889999999999999
Q ss_pred eeceeeeccCCC-CCCeEEEEEcCCCceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHHHH
Q 027062 156 YHSLVIEKESFP-SDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 220 (229)
Q Consensus 156 ~H~~~v~~~~l~-~~~~~~la~~~~~~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~~~ 220 (229)
+|+..+..+.+. .+++++||.|+.+.+++++.++.+ ++++|||||+.. ..+-+.+.+.+.
T Consensus 203 sr~~e~~~~~v~~~pga~vLA~S~~~~~q~~~~~~~~-~~~vQgHPEyd~----~~l~~ey~rd~~ 263 (312)
T 2h2w_A 203 SRYTEVKKEDIDKVPELEILAESDEAGVYVVANKSER-QIFVTGHPEYDR----YTLRDEYYRDIG 263 (312)
T ss_dssp EEEEECCHHHHTTCC-CEEEEEETTTEEEEEECSSSS-EEEECSCTTCCT----THHHHHHHHHHH
T ss_pred EeccccCHHHccCCCCCEEEEcCCCCcceEEEecCCC-EEEEECCCCCCH----HHHHHHHHHHHH
Confidence 866554332221 259999999999999999996654 999999999962 234445555544
No 35
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A
Probab=99.91 E-value=6.5e-24 Score=177.56 Aligned_cols=190 Identities=14% Similarity=0.108 Sum_probs=123.4
Q ss_pred CCceEEEEECCCc---hhHHHHHHHHHcCCEEEE--EeCCc-c--------------CHHHHhccCCCEEEECCCCCCCC
Q 027062 23 NKNPIIVIDNYDS---FTYNLCQYMGELGYHFEV--YRNDE-L--------------TVEELKRKNPRGVLISPGPGAPQ 82 (229)
Q Consensus 23 ~~~~ilvid~~~~---~~~~~~~~l~~~g~~~~v--~~~~~-~--------------~~~~l~~~~~dgiii~GG~~~~~ 82 (229)
..+||+||+.-.. +...+.+.|...+.++++ +.... . +.++++..+|||+||+|||....
T Consensus 34 rplkI~ILnlmp~k~~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGap~~~~ 113 (301)
T 2vdj_A 34 RALKIAILNLMPTKQETEAQLLRLIGNTPLQLDVHLLHMESHLSRNVAQEHLTSFYKTFRDIENEKFDGLIITGAPVETL 113 (301)
T ss_dssp CCEEEEEECCCSSHHHHHHHHHHHHTCSSSCEEEEEECCCC------------CCEECHHHHTTSCEEEEEECCCTTTTS
T ss_pred CCceEEEEeCCCCcCchHHHHHHHhcCCCCcEEEEEEeccCCCCCCccHHHHhhcccCcccccccccCEEEECCCCCcCC
Confidence 3589999987443 345577777766665554 33221 1 24444445799999999997654
Q ss_pred Cc---chHH---HHHHH-hCCCCcEEEEehhHHHHHHHhCC-eeeecCCccccCccceeEeccCCCCcccccCCCceeee
Q 027062 83 DS---GISL---QTVLE-LGPTVPLFGVCMGLQCIGEAFGG-KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAG 154 (229)
Q Consensus 83 ~~---~~~~---~~i~~-~~~~~PvlGIC~G~Qlla~alGg-~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~ 154 (229)
+. ..|. +.++. ..+++|+||||+|+|+++.++|| .....+ ..+.|... +... ...++|+.+++..|.+.
T Consensus 114 ~~ed~~yw~el~~li~~~~~~~~~~lgIC~GaQ~~l~~~~G~~k~~~~-~K~~Gv~~-~~~~-~~~~pL~~g~~~~f~~p 190 (301)
T 2vdj_A 114 SFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYHHYGVQKYPLK-EKMFGVFE-HEVR-EQHVKLLQGFDELFFAV 190 (301)
T ss_dssp CGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEEE-EEEEEEEE-EEEC-CSSCGGGTTCCSEEEEE
T ss_pred CcccCchHHHHHHHHHHHHHcCCcEEEEcHHHHHHHHHhCCCccccCC-CCEEEEEE-EEec-CCCCccccCCCCceEee
Confidence 32 2232 22222 24679999999999997776666 333322 23344333 3333 24688999999999999
Q ss_pred eeeceeeeccCC--CCCCeEEEEEcCCCceEEEEeCCCCcEEEEeccCCCCCCCchHHHHHHHHHHHHH
Q 027062 155 RYHSLVIEKESF--PSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVR 221 (229)
Q Consensus 155 ~~H~~~v~~~~l--~~~~~~~la~~~~~~i~a~~~~~~~~i~g~QfHPE~~~~~~~~~i~~~f~~~~~~ 221 (229)
++|+..+..+.+ . ++++++|.|+.+.+++++.++.+ ++++|||||+.. ..+-+.+.+.+.+
T Consensus 191 hsr~~~~~~~~v~~~-pga~vLA~S~~~~~~~~~~~~~~-~~~vQgHpEyd~----~~l~~ey~rd~~~ 253 (301)
T 2vdj_A 191 HSRHTEVRESDIREV-KELTLLANSEEAGVHLVIGQEGR-QVFALGHSEYSC----DTLKQEYERDRDK 253 (301)
T ss_dssp EEEEEECCHHHHHTC-TTEEEEEEETTTEEEEEEEGGGT-EEEECSCTTCCT----THHHHHHHHHHHH
T ss_pred eEeccCcCHHHccCC-CCCEEEEeCCCCcceEEEecCCC-EEEEECCCCCCH----HHHHHHHHHHHHc
Confidence 885533322211 3 49999999999999999996654 999999999962 2344455555443
No 36
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*
Probab=99.59 E-value=4.9e-15 Score=143.73 Aligned_cols=193 Identities=18% Similarity=0.216 Sum_probs=127.0
Q ss_pred CCceEEEEECCCchh-HHHHHHHHHcCCEEEEEeCCcc--CHHHHhccCCCEEEECCCCCCC--CCcch-----------
Q 027062 23 NKNPIIVIDNYDSFT-YNLCQYMGELGYHFEVYRNDEL--TVEELKRKNPRGVLISPGPGAP--QDSGI----------- 86 (229)
Q Consensus 23 ~~~~ilvid~~~~~~-~~~~~~l~~~g~~~~v~~~~~~--~~~~l~~~~~dgiii~GG~~~~--~~~~~----------- 86 (229)
.++||+||+++++.. ..+.++++.+|+++.+++..+. ..++++ ++|+|||+||.... -..+.
T Consensus 1046 ~~pkVaIi~~~G~N~~~~~~~A~~~aG~~~~~v~~~dl~~~~~~l~--~~d~lvlPGGfSygD~l~~g~~~a~~~l~~~~ 1123 (1303)
T 3ugj_A 1046 ARPKVAVLREQGVNSHVEMAAAFHRAGFDAIDVHMSDLLGGRIGLG--NFHALVACGGFSYGDVLGAGEGWAKSILFNHR 1123 (1303)
T ss_dssp CCCEEEEEECTTCCCHHHHHHHHHHTTCEEEEEEHHHHHTTSCCGG--GCSEEEECCSCGGGGTTSTTHHHHHHHHTSHH
T ss_pred CCCEEEEEecCCcCCHHHHHHHHHHhCCceEEEeecccccCcccHh--hCCEEEECCCCcchhhhccchhHHHHHHhchh
Confidence 578999999977764 8899999999999988763110 112343 57999999995321 11111
Q ss_pred HHHHHHH-h-CCCCcEEEEehhHHHHHHH---hCCe-----eeecCCccccCccceeEeccCCCCcccccCCC-ceeeee
Q 027062 87 SLQTVLE-L-GPTVPLFGVCMGLQCIGEA---FGGK-----IVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSN-PFTAGR 155 (229)
Q Consensus 87 ~~~~i~~-~-~~~~PvlGIC~G~Qlla~a---lGg~-----v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~-~~~~~~ 155 (229)
..+.+.+ + .+++|+||||+|||+|+.+ +.|. +.++..+.+...+..+.+.. .++++++++.. .+.++-
T Consensus 1124 l~~~l~~~~~~~g~pvLGICnG~QlL~e~~gllPg~~~~p~l~~N~s~~f~~r~~~~~v~~-~~s~~~~~~~g~~~~i~v 1202 (1303)
T 3ugj_A 1124 VRDEFETFFHRPQTLALGVCNGCQMMSNLRELIPGSELWPRFVRNHSDRFEARFSLVEVTQ-SPSLLLQGMVGSQMPIAV 1202 (1303)
T ss_dssp HHHHHHHHHHSSSCEEEEETHHHHHHHTTGGGSTTCTTCCEEECCTTSSCEEEEEEEEECC-CSCGGGTTCTTCEEEEEE
T ss_pred HHHHHHHHHHhCCCcEEEECHHHHHHHHhcCcCCCCCCCCeEecCCCCCeEEeCeEEEECC-CCChhhhccCCCEEeeee
Confidence 1223333 2 5689999999999999985 4555 77776666677776666654 36788888753 455666
Q ss_pred eecee---eec-c---CCCCCCeEEEEEc-------------CCC---ceEEEEeCCCCcEEEEeccCCCCCC-------
Q 027062 156 YHSLV---IEK-E---SFPSDALEVTAWT-------------EDG---LIMAARHKKYKHLQGVQFHPESIIT------- 205 (229)
Q Consensus 156 ~H~~~---v~~-~---~l~~~~~~~la~~-------------~~~---~i~a~~~~~~~~i~g~QfHPE~~~~------- 205 (229)
.|+.. +.. + .|..++..++-+. ++| .|+++...+++ ++|.+.||||...
T Consensus 1203 aHgEG~~~~~~~~~l~~l~~~~~v~~rY~d~~g~~~~~yp~NPNGS~~~IaGi~s~~Gr-vlg~MpHPEr~~~~~~~~~~ 1281 (1303)
T 3ugj_A 1203 SHGEGRVEVRDDAHLAALESKGLVALRYVDNFGKVTETYPANPNGSPNGITAVTTENGR-VTIMMPHPERVFRTVANSWH 1281 (1303)
T ss_dssp EESSCEEECSSHHHHHHHHHTTCEEEEEBCTTSCBCCSTTTSSSCCGGGEEEEECTTSS-EEEESSBGGGSSBGGGCSSC
T ss_pred EeCCCCeeeCCHHHHHHHHhCCcEEEEEeCCCCCcccCCCCCCCCChhhceEeECCCCC-EEEEcCChHHccccccccCC
Confidence 77533 111 1 1112344444432 333 49999999986 9999999999621
Q ss_pred C-------chHHHHHHHHHHH
Q 027062 206 T-------EGKTIVRNFIKMI 219 (229)
Q Consensus 206 ~-------~~~~i~~~f~~~~ 219 (229)
+ .+.+||+|-.+++
T Consensus 1282 p~~~~~~~pw~~~F~na~~w~ 1302 (1303)
T 3ugj_A 1282 PENWGEDSPWMRIFRNARKQL 1302 (1303)
T ss_dssp CTTCCSBCTTHHHHHHHHHHH
T ss_pred CcccCCCCcHHHHHHHHHHhc
Confidence 1 3577888766654
No 37
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=98.79 E-value=2.9e-09 Score=85.82 Aligned_cols=90 Identities=9% Similarity=0.112 Sum_probs=61.6
Q ss_pred CCceEEEEECCC------chhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCC----CcchHHHHHH
Q 027062 23 NKNPIIVIDNYD------SFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ----DSGISLQTVL 92 (229)
Q Consensus 23 ~~~~ilvid~~~------~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~----~~~~~~~~i~ 92 (229)
...+|+||+... .+..++.++++++|+++..++..+...+++.. .|+|+++||..... ....+.+.++
T Consensus 30 ~~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~d~~~~l~~--ad~I~lpGG~~~~~~~~l~~~gl~~~l~ 107 (229)
T 1fy2_A 30 GRRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAIEK--AEIIIVGGGNTFQLLKESRERGLLAPMA 107 (229)
T ss_dssp TCCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSSCHHHHHHH--CSEEEECCSCHHHHHHHHHHTTCHHHHH
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEeccccHHHHHhc--CCEEEECCCcHHHHHHHHHHCChHHHHH
Confidence 568999999753 46677889999999988877532223366764 59999999753211 0011233444
Q ss_pred H-hCCCCcEEEEehhHHHHHHHh
Q 027062 93 E-LGPTVPLFGVCMGLQCIGEAF 114 (229)
Q Consensus 93 ~-~~~~~PvlGIC~G~Qlla~al 114 (229)
+ +.+++|++|||.|+|+|+...
T Consensus 108 ~~~~~G~p~~G~sAG~~~l~~~~ 130 (229)
T 1fy2_A 108 DRVKRGALYIGWSAGANLACPTI 130 (229)
T ss_dssp HHHHTTCEEEEETHHHHHTSSBS
T ss_pred HHHHcCCEEEEECHHHHhhcccc
Confidence 3 346799999999999997743
No 38
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.69 E-value=1e-08 Score=81.26 Aligned_cols=87 Identities=11% Similarity=0.092 Sum_probs=59.0
Q ss_pred CceEEEEECCCc------hhHHHHHHHHHcCCEEEEEeCCccCH----HHHhccCCCEEEECCCCCCCC----CcchHHH
Q 027062 24 KNPIIVIDNYDS------FTYNLCQYMGELGYHFEVYRNDELTV----EELKRKNPRGVLISPGPGAPQ----DSGISLQ 89 (229)
Q Consensus 24 ~~~ilvid~~~~------~~~~~~~~l~~~g~~~~v~~~~~~~~----~~l~~~~~dgiii~GG~~~~~----~~~~~~~ 89 (229)
..+|++|+.... +..++.++++++|+++.+++....+. +.+. +.|+|+++||..... ....+.+
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~--~ad~I~l~GG~~~~l~~~L~~~gl~~ 104 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLR--KNDFIYVTGGNTFFLLQELKRTGADK 104 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHH--HSSEEEECCSCHHHHHHHHHHHTHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHH--hCCEEEECCCCHHHHHHHHHHCChHH
Confidence 579999985433 66789999999999998885332223 3455 459999998643210 0011234
Q ss_pred HHHH-hCCCCcEEEEehhHHHHHH
Q 027062 90 TVLE-LGPTVPLFGVCMGLQCIGE 112 (229)
Q Consensus 90 ~i~~-~~~~~PvlGIC~G~Qlla~ 112 (229)
.+++ ..+++|++|||.|+|+++.
T Consensus 105 ~l~~~~~~G~p~~G~sAGa~~l~~ 128 (206)
T 3l4e_A 105 LILEEIAAGKLYIGESAGAVITSP 128 (206)
T ss_dssp HHHHHHHTTCEEEEETHHHHTTSS
T ss_pred HHHHHHHcCCeEEEECHHHHHhcc
Confidence 4443 3568999999999999865
No 39
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=98.49 E-value=4.3e-07 Score=70.97 Aligned_cols=94 Identities=16% Similarity=0.243 Sum_probs=62.4
Q ss_pred cccCCCceEEEEECCCchh----HHHHHHHHHcCCEEEEEeCCccC----------------HHHHhccCCCEEEECCCC
Q 027062 19 KSKNNKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDELT----------------VEELKRKNPRGVLISPGP 78 (229)
Q Consensus 19 ~~~~~~~~ilvid~~~~~~----~~~~~~l~~~g~~~~v~~~~~~~----------------~~~l~~~~~dgiii~GG~ 78 (229)
..+..+++|+|+-. +++. ....+.|+.+|+++.++..+..+ .+++...++|+|||+||.
T Consensus 18 ~~~~~~~kV~ill~-~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~~v~~~~~l~~~~~~~~D~livpGG~ 96 (193)
T 1oi4_A 18 KKAGLSKKIAVLIT-DEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGH 96 (193)
T ss_dssp TTTTCCCEEEEECC-TTBCTHHHHHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCBT
T ss_pred hhhccCCEEEEEEC-CCCCHHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCCeEEECCCChHHCCcccCCEEEECCCc
Confidence 34455678999875 3332 34678899999999988654211 111111258999999995
Q ss_pred CCC--CCcchHHHHHHHh-CCCCcEEEEehhHHHHHHH
Q 027062 79 GAP--QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (229)
Q Consensus 79 ~~~--~~~~~~~~~i~~~-~~~~PvlGIC~G~Qlla~a 113 (229)
+.. .....+.+++++. .+++||.|||.|.|+|+.+
T Consensus 97 ~~~~l~~~~~l~~~l~~~~~~gk~i~aIC~G~~lLa~a 134 (193)
T 1oi4_A 97 SPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISA 134 (193)
T ss_dssp HHHHHTTSHHHHHHHHHHHHTTCCEEEETTTHHHHHHH
T ss_pred CHHHhhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence 421 1233455666653 4679999999999999987
No 40
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=98.47 E-value=3.1e-07 Score=70.93 Aligned_cols=94 Identities=17% Similarity=0.170 Sum_probs=60.5
Q ss_pred ccCCCceEEEEECCCchh----HHHHHHHHHcCCEEEEEeCCc--------------cCHHHHhccCCCEEEECCCCCCC
Q 027062 20 SKNNKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDE--------------LTVEELKRKNPRGVLISPGPGAP 81 (229)
Q Consensus 20 ~~~~~~~ilvid~~~~~~----~~~~~~l~~~g~~~~v~~~~~--------------~~~~~l~~~~~dgiii~GG~~~~ 81 (229)
+|.+++++++|=..++|. -...+.|+++|+++.++..+. ...++++..+||+|+|+||.+..
T Consensus 3 ~m~~t~~~v~il~~~gFe~~E~~~p~~~l~~ag~~V~~~s~~~~~v~~~~G~~v~~d~~l~~v~~~~yD~liiPGG~g~~ 82 (177)
T 4hcj_A 3 AMGKTNNILYVMSGQNFQDEEYFESKKIFESAGYKTKVSSTFIGTAQGKLGGMTNIDLLFSEVDAVEFDAVVFVGGIGCI 82 (177)
T ss_dssp --CCCCEEEEECCSEEECHHHHHHHHHHHHHTTCEEEEEESSSEEEEETTSCEEEECEEGGGCCGGGCSEEEECCSGGGG
T ss_pred ccccCCCEEEEECCCCccHHHHHHHHHHHHHCCCEEEEEECCCCeEeeCCCCEEecCccHHHCCHhHCCEEEECCCccHH
Confidence 355555554443334443 234678899999998875321 22344444478999999997642
Q ss_pred --CCcchHHHHHHH-hCCCCcEEEEehhHHHHHHH
Q 027062 82 --QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 113 (229)
Q Consensus 82 --~~~~~~~~~i~~-~~~~~PvlGIC~G~Qlla~a 113 (229)
.+.....+++++ ..+++||.+||.|.++|+.+
T Consensus 83 ~l~~~~~~~~~l~~~~~~~k~iaaIC~g~~~La~a 117 (177)
T 4hcj_A 83 TLWDDWRTQGLAKLFLDNQKIVAGIGSGVVIMANA 117 (177)
T ss_dssp GGTTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHT
T ss_pred HHhhCHHHHHHHHHHHHhCCEEEEecccHHHHHHC
Confidence 234455666665 35789999999999999875
No 41
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=98.23 E-value=2.4e-06 Score=68.64 Aligned_cols=92 Identities=14% Similarity=0.115 Sum_probs=60.0
Q ss_pred CceEEEEECC----Cchh----HHHHHHHHHcCCEEEEEeCCcc--------------------------------CHHH
Q 027062 24 KNPIIVIDNY----DSFT----YNLCQYMGELGYHFEVYRNDEL--------------------------------TVEE 63 (229)
Q Consensus 24 ~~~ilvid~~----~~~~----~~~~~~l~~~g~~~~v~~~~~~--------------------------------~~~~ 63 (229)
+++|+||-.. +++. ....+.|+.+|+++.++..+.. ..++
T Consensus 6 m~kv~ill~~~~~~~g~~~~E~~~p~~~l~~ag~~v~~~s~~g~~~~v~d~~s~~~~~~~~g~~i~~~~~~~~~~~~l~~ 85 (232)
T 1vhq_A 6 MKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQ 85 (232)
T ss_dssp CCEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGGG
T ss_pred CCeEEEEEccCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCCCCcccccccccchhhhhhhhHHHHHhhhcCCCCHHH
Confidence 3578888541 3332 2245778899999998864321 1122
Q ss_pred HhccCCCEEEECCCCCC---CCC----------cchHHHHHHHh-CCCCcEEEEehhHHHHHHHhC
Q 027062 64 LKRKNPRGVLISPGPGA---PQD----------SGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFG 115 (229)
Q Consensus 64 l~~~~~dgiii~GG~~~---~~~----------~~~~~~~i~~~-~~~~PvlGIC~G~Qlla~alG 115 (229)
++..+||+|||+||.+. ..+ ...+.+++++. .+++||.+||.|.++|+.++.
T Consensus 86 ~~~~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~aL~ 151 (232)
T 1vhq_A 86 ADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFD 151 (232)
T ss_dssp CCGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHHCS
T ss_pred cCcccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHHhc
Confidence 21126899999999654 222 34455666653 478999999999999999844
No 42
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=98.22 E-value=2.1e-06 Score=65.30 Aligned_cols=89 Identities=16% Similarity=0.200 Sum_probs=59.6
Q ss_pred CceEEEEECCCchh----HHHHHHHHHcCCEEEEEeCCcc--------------CHHHHhccCCCEEEECCCCCCC--CC
Q 027062 24 KNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP--QD 83 (229)
Q Consensus 24 ~~~ilvid~~~~~~----~~~~~~l~~~g~~~~v~~~~~~--------------~~~~l~~~~~dgiii~GG~~~~--~~ 83 (229)
+++|+|+-. +++. ....+.|+..|+++.++..+.. ..+++...+||+|+|+||.+.. ..
T Consensus 2 ~~ki~il~~-~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~ 80 (168)
T 3l18_A 2 SMKVLFLSA-DGFEDLELIYPLHRIKEEGHEVYVASFQRGKITGKHGYSVNVDLTFEEVDPDEFDALVLPGGKAPEIVRL 80 (168)
T ss_dssp CCEEEEECC-TTBCHHHHHHHHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBSHHHHHTT
T ss_pred CcEEEEEeC-CCccHHHHHHHHHHHHHCCCEEEEEECCCCEEecCCCcEEeccCChhHCCHhhCCEEEECCCcCHHHhcc
Confidence 568888865 3432 2356788899999988764321 1233322258999999997421 23
Q ss_pred cchHHHHHHH-hCCCCcEEEEehhHHHHHHH
Q 027062 84 SGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 113 (229)
Q Consensus 84 ~~~~~~~i~~-~~~~~PvlGIC~G~Qlla~a 113 (229)
.....+++++ ..+++||.+||.|.++|+.+
T Consensus 81 ~~~l~~~l~~~~~~~k~i~aiC~G~~~La~a 111 (168)
T 3l18_A 81 NEKAVMITRRMFEDDKPVASICHGPQILISA 111 (168)
T ss_dssp CHHHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred CHHHHHHHHHHHHCCCEEEEECHhHHHHHHC
Confidence 3445566665 35789999999999999985
No 43
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=98.05 E-value=9.5e-06 Score=65.63 Aligned_cols=90 Identities=14% Similarity=0.147 Sum_probs=59.0
Q ss_pred ceEEEEEC----CCchh----HHHHHHHHHcCCEEEEEeCCcc-------------------CH-H---------HHhc-
Q 027062 25 NPIIVIDN----YDSFT----YNLCQYMGELGYHFEVYRNDEL-------------------TV-E---------ELKR- 66 (229)
Q Consensus 25 ~~ilvid~----~~~~~----~~~~~~l~~~g~~~~v~~~~~~-------------------~~-~---------~l~~- 66 (229)
++|+||=. ++++. -.....|+++|+++.++..+.. .. . .+++
T Consensus 24 kkV~ill~~~~~~dG~e~~E~~~p~~vL~~aG~~V~~~S~~~g~~~~~~~~~g~~v~~s~g~~v~~d~~~~~~~~~l~dv 103 (242)
T 3l3b_A 24 LNSAVILAGCGHMDGSEIREAVLVMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVESARIARGSVYDIEQI 103 (242)
T ss_dssp CEEEEECCCSSTTTSCCHHHHHHHHHHHHHTTCEEEEEECSSBCSCEEETTTTEEESCCCBHHHHHHHHTTTCEEEGGGC
T ss_pred CEEEEEEecCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCCcccccccccCccccccCCeEEecchhccccCCChHHC
Confidence 57888854 24432 2246778999999998754321 00 0 1222
Q ss_pred --cCCCEEEECCCCCCC--------------CCcchHHHHHHHh-CCCCcEEEEehhHHHHHHHh
Q 027062 67 --KNPRGVLISPGPGAP--------------QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAF 114 (229)
Q Consensus 67 --~~~dgiii~GG~~~~--------------~~~~~~~~~i~~~-~~~~PvlGIC~G~Qlla~al 114 (229)
.+||+|||+||.+.. .....+.+++++. .+++||.+||-|..+|+.+-
T Consensus 104 ~~~~~D~livPGG~~~~~~L~~~~~~~~~~~~~~~~l~~~lr~~~~~gk~IaaIC~G~~~La~ag 168 (242)
T 3l3b_A 104 RVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCISPAVVVALL 168 (242)
T ss_dssp CGGGCSEEEECCCHHHHHHHBSTTSCC--CCCBCHHHHHHHHHHHHTTCCEEEETTHHHHHHHHH
T ss_pred CcccCCEEEEcCCcchhhhhhhhhccccccccCCHHHHHHHHHHHHcCCEEEEECHHHHHHHHhC
Confidence 258999999996521 1234456666653 47799999999999999876
No 44
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=98.01 E-value=1e-05 Score=62.74 Aligned_cols=90 Identities=17% Similarity=0.244 Sum_probs=58.6
Q ss_pred CCceEEEEECCCchh----HHHHHHHHHcCCEEEEEeCCcc-------------------CHHHHhccCCCEEEECCCCC
Q 027062 23 NKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDEL-------------------TVEELKRKNPRGVLISPGPG 79 (229)
Q Consensus 23 ~~~~ilvid~~~~~~----~~~~~~l~~~g~~~~v~~~~~~-------------------~~~~l~~~~~dgiii~GG~~ 79 (229)
.+++|+|+-. +++. ....+.|+..|+++.++..+.. ..+++...+||+|||+||..
T Consensus 8 ~~~~v~il~~-~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~ 86 (190)
T 2vrn_A 8 TGKKIAILAA-DGVEEIELTSPRAAIEAAGGTTELISLEPGEIQSMKGDIEPQEKYRVDHVVSEVQVSDYDGLLLPGGTV 86 (190)
T ss_dssp TTCEEEEECC-TTCBHHHHHHHHHHHHHTTCEEEEEESSSSEEEEEETTTEEEEEEECSEEGGGCCGGGCSEEEECCCTH
T ss_pred CCCEEEEEeC-CCCCHHHHHHHHHHHHHCCCEEEEEecCCCccccccccccCCcEEeCCCChhhCChhhCCEEEECCCch
Confidence 3467888854 4443 2356788899999987754311 11222212689999999974
Q ss_pred CC---CCcchHHHHHHH-hCCCCcEEEEehhHHHHHHH
Q 027062 80 AP---QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 113 (229)
Q Consensus 80 ~~---~~~~~~~~~i~~-~~~~~PvlGIC~G~Qlla~a 113 (229)
.. .......+++++ ..+++||.+||.|.++|+.+
T Consensus 87 ~~~~~~~~~~l~~~l~~~~~~gk~i~aiC~G~~~La~a 124 (190)
T 2vrn_A 87 NPDKLRLEEGAMKFVRDMYDAGKPIAAICHGPWSLSET 124 (190)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCEEEC-CTTHHHHHT
T ss_pred hHHHHhhCHHHHHHHHHHHHcCCEEEEECHhHHHHHhC
Confidence 32 233445666665 34779999999999999985
No 45
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=97.96 E-value=1.3e-05 Score=62.23 Aligned_cols=89 Identities=10% Similarity=0.106 Sum_probs=59.0
Q ss_pred CceEEEEECCCchh----HHHHHHHHHcCCEEEEEeCCc-cC--------------HHHHhccCCCEEEECCCCCCC---
Q 027062 24 KNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDE-LT--------------VEELKRKNPRGVLISPGPGAP--- 81 (229)
Q Consensus 24 ~~~ilvid~~~~~~----~~~~~~l~~~g~~~~v~~~~~-~~--------------~~~l~~~~~dgiii~GG~~~~--- 81 (229)
++||+|+=. +++. ....+.|+.+|+++.++..+. .+ .+++...+||.|+|+||....
T Consensus 5 ~kkv~ill~-~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D~livpGG~~~~~~~ 83 (190)
T 4e08_A 5 SKSALVILA-PGAEEMEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGGLGGSNAM 83 (190)
T ss_dssp CCEEEEEEC-TTCCHHHHHHHHHHHHHTTCEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCSEEEECCCHHHHHHH
T ss_pred CcEEEEEEC-CCchHHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCCEEEECCCChHHHHh
Confidence 457777754 3432 235688999999999886542 11 233333368999999994321
Q ss_pred CCcchHHHHHHH-hCCCCcEEEEehhHHHHHHH
Q 027062 82 QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 113 (229)
Q Consensus 82 ~~~~~~~~~i~~-~~~~~PvlGIC~G~Qlla~a 113 (229)
.....+.+++++ ..+++||.+||-|.++|+.+
T Consensus 84 ~~~~~~~~~l~~~~~~~k~i~aiC~G~~~La~a 116 (190)
T 4e08_A 84 GESSLVGDLLRSQESGGGLIAAICAAPTVLAKH 116 (190)
T ss_dssp HHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred hhCHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 123345566655 35789999999999999874
No 46
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=97.96 E-value=1e-05 Score=63.72 Aligned_cols=89 Identities=11% Similarity=0.054 Sum_probs=58.6
Q ss_pred ceEEEEECCCchh---HHHHHHHHHcCCEEEEEeCCcc-----------------CHHHHhccCCCEEEECCCCCCCC--
Q 027062 25 NPIIVIDNYDSFT---YNLCQYMGELGYHFEVYRNDEL-----------------TVEELKRKNPRGVLISPGPGAPQ-- 82 (229)
Q Consensus 25 ~~ilvid~~~~~~---~~~~~~l~~~g~~~~v~~~~~~-----------------~~~~l~~~~~dgiii~GG~~~~~-- 82 (229)
++|+|+-..+... ....+.|+.+|+++.++..+.. +.+++...+||+|||+||.+.+.
T Consensus 3 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpGG~~~~~~l 82 (205)
T 2ab0_A 3 ASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECF 82 (205)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHHHHH
T ss_pred cEEEEEEcCCCcHHHHHHHHHHHHHCCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCcccCCEEEECCCcccHHHh
Confidence 4688776532221 2356788999999988764321 23444334689999999964332
Q ss_pred -CcchHHHHHHH-hCCCCcEEEEehhH-HHHHHH
Q 027062 83 -DSGISLQTVLE-LGPTVPLFGVCMGL-QCIGEA 113 (229)
Q Consensus 83 -~~~~~~~~i~~-~~~~~PvlGIC~G~-Qlla~a 113 (229)
......+++++ ..+++||.+||.|. ++|+.+
T Consensus 83 ~~~~~l~~~l~~~~~~gk~i~aiC~G~~~lLa~a 116 (205)
T 2ab0_A 83 RDSTLLVETVKQFHRSGRIVAAICAAPATVLVPH 116 (205)
T ss_dssp HHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTT
T ss_pred ccCHHHHHHHHHHHHcCCEEEEECHhHHHHHHHC
Confidence 22344556655 34779999999999 999864
No 47
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=97.95 E-value=8.6e-06 Score=63.61 Aligned_cols=89 Identities=16% Similarity=0.110 Sum_probs=59.7
Q ss_pred CceEEEEECCCchh----HHHHHHHHHcCCEEEEEeCCc---------------cCHHHH-hccCCCEEEECCCCCCCC-
Q 027062 24 KNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDE---------------LTVEEL-KRKNPRGVLISPGPGAPQ- 82 (229)
Q Consensus 24 ~~~ilvid~~~~~~----~~~~~~l~~~g~~~~v~~~~~---------------~~~~~l-~~~~~dgiii~GG~~~~~- 82 (229)
+++|+|+-. +++. ....+.|+.+|+++.++..+. .+.+++ +..+||+|+|+||.+...
T Consensus 3 ~~~v~ill~-~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~livpGG~~~~~~ 81 (197)
T 2rk3_A 3 SKRALVILA-KGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQN 81 (197)
T ss_dssp CCEEEEEEC-TTCCHHHHHHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEEEECCCHHHHHH
T ss_pred CCEEEEEEC-CCCcHHHHHHHHHHHHHCCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCEEEECCCchhHHH
Confidence 356777765 3432 235678999999999886431 123444 334789999999964321
Q ss_pred --CcchHHHHHHH-hCCCCcEEEEehhHHHHHHH
Q 027062 83 --DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 113 (229)
Q Consensus 83 --~~~~~~~~i~~-~~~~~PvlGIC~G~Qlla~a 113 (229)
......+++++ ..+++||.+||.|.++|+.+
T Consensus 82 l~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~a 115 (197)
T 2rk3_A 82 LSESAAVKEILKEQENRKGLIATICAGPTALLAH 115 (197)
T ss_dssp HHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred hhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence 22344566665 34679999999999999986
No 48
>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}
Probab=97.78 E-value=4.2e-05 Score=58.42 Aligned_cols=87 Identities=14% Similarity=0.196 Sum_probs=54.6
Q ss_pred ceEEEEECCC--c---hhHHHHHHHHHcCCEEEEEeCCc---------------cCHHHH--hccCCCEEEECCC--C-C
Q 027062 25 NPIIVIDNYD--S---FTYNLCQYMGELGYHFEVYRNDE---------------LTVEEL--KRKNPRGVLISPG--P-G 79 (229)
Q Consensus 25 ~~ilvid~~~--~---~~~~~~~~l~~~g~~~~v~~~~~---------------~~~~~l--~~~~~dgiii~GG--~-~ 79 (229)
++|+|+-+.. + +.. .+.+.+.|+++.++..+. ...+++ ...+||.|||+|| . +
T Consensus 3 ~~v~ill~~~~~g~~~~~~--~e~~~~~~~~v~~vs~~~~~~v~~~~g~~v~~d~~~~~~~~~~~~~D~livpGG~~~~~ 80 (175)
T 3cne_A 3 KKVAVLAVNPVNGCGLFQY--LEAFFENGISYKVFAVSDTKEIKTNSGMVLIVDDVIANLKGHEDEFDALVFSCGDAVPV 80 (175)
T ss_dssp CEEEEEECSSBCHHHHHHH--HHHHHHTTCEEEEEESSSSSEEEBTTSCEEECSEEGGGGTTCGGGCSEEEEECCTTGGG
T ss_pred cEEEEEEecCcCCCccchh--hheeeeCCCEEEEEECCCCCceecCCCeEEEeccCHHHhccCcccCCEEEECCCcCccc
Confidence 5788887531 3 322 222337799998876541 122333 2236899999999 4 3
Q ss_pred CC--C---CcchHHHHHHHh-CCCCcEEEEehhHHHHHHH
Q 027062 80 AP--Q---DSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (229)
Q Consensus 80 ~~--~---~~~~~~~~i~~~-~~~~PvlGIC~G~Qlla~a 113 (229)
.. . ......+++++. .+++||.+||.|.++|+.+
T Consensus 81 ~~~l~~~~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~a 120 (175)
T 3cne_A 81 FQQYANQPYNVDLMEVIKTFGEKGKMMIGHCAGAMMFDFT 120 (175)
T ss_dssp GGGCTTCHHHHHHHHHHHHHHHTTCEEEEETTHHHHHHHT
T ss_pred HHHHhhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 21 2 223345666653 4779999999999999986
No 49
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=97.76 E-value=0.00014 Score=66.52 Aligned_cols=92 Identities=12% Similarity=0.038 Sum_probs=62.7
Q ss_pred CCCceEEEEECCCchh----HHHHHHHHHcCCEEEEEeCCc-----cCHHHHhccCCCEEEECCCCCC----------CC
Q 027062 22 NNKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDE-----LTVEELKRKNPRGVLISPGPGA----------PQ 82 (229)
Q Consensus 22 ~~~~~ilvid~~~~~~----~~~~~~l~~~g~~~~v~~~~~-----~~~~~l~~~~~dgiii~GG~~~----------~~ 82 (229)
-..+||+||-..+.+. ..+.++|+++|+.+.++.... ...++.....||+|||+||... ..
T Consensus 535 l~grKVaILvadG~fE~~El~~p~~aL~~aGa~V~vVsp~~g~GvD~t~~~~~s~~fDAVvlPGG~~~~~~~~~~~d~Lr 614 (688)
T 3ej6_A 535 IATLRVGVLSTTKGGSLDKAKALKEQLEKDGLKVTVIAEYLASGVDQTYSAADATAFDAVVVAEGAERVFSGKGAMSPLF 614 (688)
T ss_dssp CTTCEEEEECCSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCTTCCEETTTCCGGGCSEEEECTTCCTTTSTTTTCCTTS
T ss_pred ccCCEEEEEccCCCccHHHHHHHHHHHHHCCCEEEEEeCCCCCCcccCcccCChhcCcEEEECCCcccccccccchhhhc
Confidence 3457888885422233 346789999999999986421 1223333336899999999643 22
Q ss_pred CcchHHHHHHH-hCCCCcEEEEehhHHHHHHH
Q 027062 83 DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 113 (229)
Q Consensus 83 ~~~~~~~~i~~-~~~~~PvlGIC~G~Qlla~a 113 (229)
.....+..+++ ..++|||-.||-|-|+|..+
T Consensus 615 ~~~~a~~fV~e~~~hgKpIAAIchgp~lL~~A 646 (688)
T 3ej6_A 615 PAGRPSQILTDGYRWGKPVAAVGSAKKALQSI 646 (688)
T ss_dssp CTTHHHHHHHHHHHTTCCEEEEGGGHHHHHHT
T ss_pred cCHHHHHHHHHHHHcCCEEEEeCccHHHHHHc
Confidence 33455666665 45789999999999999875
No 50
>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2
Probab=97.75 E-value=4.5e-05 Score=59.03 Aligned_cols=88 Identities=15% Similarity=0.164 Sum_probs=56.3
Q ss_pred ceEEEEECCCch----hHHHHHHHHH-cCCEEEEEeCCcc--------------CHHHHhccCCCEEEECCCCCCC-CCc
Q 027062 25 NPIIVIDNYDSF----TYNLCQYMGE-LGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP-QDS 84 (229)
Q Consensus 25 ~~ilvid~~~~~----~~~~~~~l~~-~g~~~~v~~~~~~--------------~~~~l~~~~~dgiii~GG~~~~-~~~ 84 (229)
++|+|+=. +++ .....+.|+. .|+++.++..+.. +.+++...++|+|+|+||.+.. ...
T Consensus 2 ~~i~ill~-~g~~~~e~~~~~~~l~~a~~~~v~~vs~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~~~~~~~ 80 (188)
T 2fex_A 2 TRIAIALA-QDFADWEPALLAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLSWEKGTA 80 (188)
T ss_dssp CEEEEECC-TTBCTTSSHHHHHHHHHHSCCEEEEEETTSSCEECTTCCEEECSEEGGGCCTTTCSEEEECCBSHHHHTCC
T ss_pred cEEEEEeC-CCchHHHHHHHHHHHhhcCCceEEEEeCCCCceeeCCCcEEeccccHHHCCcccCCEEEECCCCccccccc
Confidence 46777743 232 1335677888 8999988764321 1222222268999999996421 223
Q ss_pred chHHHHHHHh-CCCCcEEEEehhHHHHHHH
Q 027062 85 GISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (229)
Q Consensus 85 ~~~~~~i~~~-~~~~PvlGIC~G~Qlla~a 113 (229)
....+++++. .++++|.+||.|.++|+.+
T Consensus 81 ~~l~~~l~~~~~~~k~i~aiC~G~~~La~a 110 (188)
T 2fex_A 81 ADLGGLVKRFRDRDRLVAGICAAASALGGT 110 (188)
T ss_dssp CCCHHHHHHHHHTTCEEEEETHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 3445666543 4679999999999999975
No 51
>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}
Probab=97.75 E-value=6.5e-05 Score=59.38 Aligned_cols=89 Identities=7% Similarity=0.032 Sum_probs=56.0
Q ss_pred ceEEEEEC--CCch-hHHHHHHHH--------HcCCEEEEEeCCcc--------------CHHHHhccCCCEEEECCCCC
Q 027062 25 NPIIVIDN--YDSF-TYNLCQYMG--------ELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPG 79 (229)
Q Consensus 25 ~~ilvid~--~~~~-~~~~~~~l~--------~~g~~~~v~~~~~~--------------~~~~l~~~~~dgiii~GG~~ 79 (229)
++|+|+=. .... .....+.|+ +.++++.++..+.. ..+++...++|.|||+||.+
T Consensus 6 ~~v~ill~~g~~~~e~~~~~~~l~~a~~~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~~~~~~~~~~~D~livpGG~~ 85 (212)
T 3efe_A 6 KKAFLYVFNTMSDWEYGYLIAELNSGRYFKKDLAPLKVITVGANKEMITTMGGLRIKPDISLDECTLESKDLLILPGGTT 85 (212)
T ss_dssp CCEEEEECTTCCTTTTHHHHHHHHHCTTSCTTCCCCCEEEEESSSCCEECTTCCEECCSEEGGGCCCCTTCEEEECCCSC
T ss_pred cEEEEEECCCccHHHHHHHHHHHHhhhccccCCCCeEEEEEECCCCeEEcCCCCEEecCcCHHHCCccCCCEEEECCCCc
Confidence 45666643 2222 234667777 66888887754321 12333323689999999976
Q ss_pred CCC-CcchHHHHHHH-hCCCCcEEEEehhHHHHHHH
Q 027062 80 APQ-DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 113 (229)
Q Consensus 80 ~~~-~~~~~~~~i~~-~~~~~PvlGIC~G~Qlla~a 113 (229)
... ....+.+++++ ..++++|.+||-|..+|+.+
T Consensus 86 ~~~~~~~~l~~~l~~~~~~gk~iaaiC~G~~~La~a 121 (212)
T 3efe_A 86 WSEEIHQPILERIGQALKIGTIVAAICGATDALANM 121 (212)
T ss_dssp TTSGGGHHHHHHHHHHHHHTCEEEEETHHHHHHHHT
T ss_pred cccccCHHHHHHHHHHHHCCCEEEEEcHHHHHHHHc
Confidence 332 22345566665 34679999999999999885
No 52
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=97.74 E-value=6e-05 Score=59.91 Aligned_cols=74 Identities=16% Similarity=0.168 Sum_probs=51.1
Q ss_pred HHHHHHHcCCEEEEEeCCccCH---------------------------HHHhccCCCEEEECCCCCCC---CCcchHHH
Q 027062 40 LCQYMGELGYHFEVYRNDELTV---------------------------EELKRKNPRGVLISPGPGAP---QDSGISLQ 89 (229)
Q Consensus 40 ~~~~l~~~g~~~~v~~~~~~~~---------------------------~~l~~~~~dgiii~GG~~~~---~~~~~~~~ 89 (229)
..+.|+.+|+++.++..+..+. +++...+||+|||+||.+.. .....+.+
T Consensus 34 p~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~D~livpGG~~~~~~l~~~~~l~~ 113 (224)
T 1u9c_A 34 PYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARLSKDDAHGFDAIFLPGGHGTMFDFPDNETLQY 113 (224)
T ss_dssp HHHHHHHTTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSBEECCGGGGSSCSEEEECCCTTHHHHSTTCHHHHH
T ss_pred HHHHHHHCCCeEEEECCCCCccccCccccccHHHHHhhhhHhhcCCCChHHcChhhCCEEEECCCcchHHHhhcCHHHHH
Confidence 5677889999999886432110 11211268999999997642 33445566
Q ss_pred HHHHh-CCCCcEEEEehhHHHHHHH
Q 027062 90 TVLEL-GPTVPLFGVCMGLQCIGEA 113 (229)
Q Consensus 90 ~i~~~-~~~~PvlGIC~G~Qlla~a 113 (229)
++++. .+++||.+||.|.++|+.+
T Consensus 114 ~l~~~~~~~k~iaaiC~G~~~La~a 138 (224)
T 1u9c_A 114 VLQQFAEDGRIIAAVCHGPSGLVNA 138 (224)
T ss_dssp HHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred HHHHHHHCCCEEEEEChHHHHHHHc
Confidence 66653 4679999999999998865
No 53
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=97.72 E-value=2.3e-05 Score=61.78 Aligned_cols=93 Identities=13% Similarity=0.145 Sum_probs=59.0
Q ss_pred ccCCCceEEEEECCCchh----HHHHHHHHHcCCEEEEEeCCc-c--------------CHHHHhccCCCEEEECCCCCC
Q 027062 20 SKNNKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDE-L--------------TVEELKRKNPRGVLISPGPGA 80 (229)
Q Consensus 20 ~~~~~~~ilvid~~~~~~----~~~~~~l~~~g~~~~v~~~~~-~--------------~~~~l~~~~~dgiii~GG~~~ 80 (229)
+.+.+++|+|+-. +++. ....+.|+.+|+++.++..+. . ..+++...+||.|+|+||.+.
T Consensus 5 ~~~m~~~v~ill~-~g~~~~e~~~~~~~l~~ag~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~~~~D~livpGG~~~ 83 (208)
T 3ot1_A 5 EQGMSKRILVPVA-HGSEEMETVIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALALPGGVGG 83 (208)
T ss_dssp ----CCEEEEEEC-TTCCHHHHHHHHHHHHHTTCEEEEEESSSCSEEECTTSCEEECSEEGGGCCGGGCSEEEECCCHHH
T ss_pred ccccCCeEEEEEC-CCCcHHHHHHHHHHHHHCCCEEEEEEcCCCcceecCCCcEEeCCCCHHHCCCcCCCEEEECCCchH
Confidence 3334567888865 3432 235678899999998886541 1 122222226899999999642
Q ss_pred C---CCcchHHHHHHH-hCCCCcEEEEehhH-HHHHHH
Q 027062 81 P---QDSGISLQTVLE-LGPTVPLFGVCMGL-QCIGEA 113 (229)
Q Consensus 81 ~---~~~~~~~~~i~~-~~~~~PvlGIC~G~-Qlla~a 113 (229)
+ .....+.+++++ ..++++|.+||-|. .+|+.+
T Consensus 84 ~~~l~~~~~l~~~l~~~~~~gk~i~aiC~G~a~~La~a 121 (208)
T 3ot1_A 84 AQAFADSTALLALIDAFSQQGKLVAAICATPALVFAKQ 121 (208)
T ss_dssp HHHHHTCHHHHHHHHHHHHTTCEEEEETTHHHHTTTTT
T ss_pred HHHHhhCHHHHHHHHHHHHcCCEEEEEChhHHHHHHHC
Confidence 2 234455666665 35789999999998 888763
No 54
>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}
Probab=97.71 E-value=7.6e-05 Score=58.53 Aligned_cols=91 Identities=13% Similarity=0.070 Sum_probs=56.4
Q ss_pred CCCceEEEEECCCchh----HHHHHHHHHcC------CEEEEEeCCcc-------------CHHHHhccCCCEEEECCCC
Q 027062 22 NNKNPIIVIDNYDSFT----YNLCQYMGELG------YHFEVYRNDEL-------------TVEELKRKNPRGVLISPGP 78 (229)
Q Consensus 22 ~~~~~ilvid~~~~~~----~~~~~~l~~~g------~~~~v~~~~~~-------------~~~~l~~~~~dgiii~GG~ 78 (229)
..+++|+|+-. +++. ....+.|+.++ +++.++..+.. +.++....++|.|||+||.
T Consensus 3 ~~~~~v~ill~-~g~~~~e~~~~~dvl~~a~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~l~~~~~~~~D~livpGG~ 81 (202)
T 3gra_A 3 LAPYRVDFILL-EHFSMASFTVAMDVLVTANLLRADSFQFTPLSLDGDRVLSDLGLELVATELSAAALKELDLLVVCGGL 81 (202)
T ss_dssp --CEEEEEEEC-TTBCHHHHHHHHHHHHHHHHHSTTSEEEEEEESSSSEEEBTTSCEEECEECCSGGGTTCSEEEEECCT
T ss_pred CCcEEEEEEEe-CCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCceEcCCCCEEECCCcccccCCCCCEEEEeCCC
Confidence 34567888865 3443 22455565554 77776654311 1122212368999999997
Q ss_pred CCCCCcchHHHHHHHh-CCCCcEEEEehhHHHHHHH
Q 027062 79 GAPQDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (229)
Q Consensus 79 ~~~~~~~~~~~~i~~~-~~~~PvlGIC~G~Qlla~a 113 (229)
+.......+++++++. .++++|.+||-|..+|+.+
T Consensus 82 ~~~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~a 117 (202)
T 3gra_A 82 RTPLKYPELDRLLNDCAAHGMALGGLWNGAWFLGRA 117 (202)
T ss_dssp TCCSCCTTHHHHHHHHHHHTCEEEEETTHHHHHHHH
T ss_pred chhhccHHHHHHHHHHHhhCCEEEEECHHHHHHHHc
Confidence 6543225556666653 4679999999999999986
No 55
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=97.66 E-value=7.4e-05 Score=58.87 Aligned_cols=88 Identities=11% Similarity=0.174 Sum_probs=57.5
Q ss_pred CceEEEEECCCchh----HHHHHHHHHc-CCEEEEEeCCcc-------------CHHHHhccCCCEEEECCCCCCCCCcc
Q 027062 24 KNPIIVIDNYDSFT----YNLCQYMGEL-GYHFEVYRNDEL-------------TVEELKRKNPRGVLISPGPGAPQDSG 85 (229)
Q Consensus 24 ~~~ilvid~~~~~~----~~~~~~l~~~-g~~~~v~~~~~~-------------~~~~l~~~~~dgiii~GG~~~~~~~~ 85 (229)
+++|+|+=. +++. ....+.|++. |+++.++..+.. +.+++ ..++|.|+|+||.+......
T Consensus 3 m~kV~ill~-~g~~~~E~~~~~~~l~~~~~~~v~~vs~~~~V~~~~G~~v~~d~~l~~~-~~~~D~livpGG~~~~~~~~ 80 (206)
T 3f5d_A 3 LKKALFLIL-DQYADWEGVYLASALNQREDWSVHTVSLDPIVSSIGGFKTSVDYIIGLE-PANFNLLVMIGGDSWSNDNK 80 (206)
T ss_dssp CEEEEEECC-SSBCTTTSHHHHHHHHTSTTEEEEEEESSSEEEBTTSCEEECSEETTSS-CSCCSEEEECCBSCCCCCCH
T ss_pred ccEEEEEEc-CCCcHHHHHHHHHHHhccCCeEEEEEECCCCEEecCCcEEecCcChhhC-CcCCCEEEEcCCCChhhcCH
Confidence 346777743 3332 3456777777 888887754311 11222 12689999999975433344
Q ss_pred hHHHHHHHh-CCCCcEEEEehhHHHHHHH
Q 027062 86 ISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (229)
Q Consensus 86 ~~~~~i~~~-~~~~PvlGIC~G~Qlla~a 113 (229)
.+.+++++. .++++|.+||-|.++|+.+
T Consensus 81 ~l~~~l~~~~~~gk~iaaiC~G~~~La~a 109 (206)
T 3f5d_A 81 KLLHFVKTAFQKNIPIAAICGAVDFLAKN 109 (206)
T ss_dssp HHHHHHHHHHHTTCCEEEETHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCEEEEECHHHHHHHHc
Confidence 556677653 5789999999999999885
No 56
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=97.63 E-value=9.2e-05 Score=63.99 Aligned_cols=91 Identities=16% Similarity=0.255 Sum_probs=60.2
Q ss_pred CCCceEEEEECCCchh----HHHHHHHHHcCCEEEEEeCCcc------------------------------CHHHHhcc
Q 027062 22 NNKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDEL------------------------------TVEELKRK 67 (229)
Q Consensus 22 ~~~~~ilvid~~~~~~----~~~~~~l~~~g~~~~v~~~~~~------------------------------~~~~l~~~ 67 (229)
..++||+|+=. +++. ....+.|+++|+++.++..+.. +.++++..
T Consensus 10 ~~~~kv~ill~-dg~e~~E~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~ 88 (396)
T 3uk7_A 10 ANSRTVLILCG-DYMEDYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDEVDLS 88 (396)
T ss_dssp -CCCEEEEECC-TTEEHHHHHHHHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECCSCGGGCCGG
T ss_pred hcCCeEEEEeC-CCccHHHHHHHHHHHHHCCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeeccCChhhcCcc
Confidence 44567888764 4443 2356789999999988854311 12222223
Q ss_pred CCCEEEECCCCCCC--CCcchHHHHHHH-hCCCCcEEEEehhHHHHHHH
Q 027062 68 NPRGVLISPGPGAP--QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 113 (229)
Q Consensus 68 ~~dgiii~GG~~~~--~~~~~~~~~i~~-~~~~~PvlGIC~G~Qlla~a 113 (229)
+||.|+|+||.+.. .......+++++ ..+++||.+||-|.++|+.+
T Consensus 89 ~~D~livpGG~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~La~a 137 (396)
T 3uk7_A 89 KYDGLVIPGGRAPEYLALTASVVELVKEFSRSGKPIASICHGQLILAAA 137 (396)
T ss_dssp GCSEEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred cCCEEEECCCcchhhcccCHHHHHHHHHHHHcCCEEEEECchHHHHHhc
Confidence 68999999996521 233445566665 35789999999999999986
No 57
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=97.60 E-value=6.1e-05 Score=61.05 Aligned_cols=46 Identities=13% Similarity=0.096 Sum_probs=34.4
Q ss_pred CCCEEEECCCCCCC---CCcchHHHHHHH-hCCCCcEEEEehhHHHHHHH
Q 027062 68 NPRGVLISPGPGAP---QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 113 (229)
Q Consensus 68 ~~dgiii~GG~~~~---~~~~~~~~~i~~-~~~~~PvlGIC~G~Qlla~a 113 (229)
+||+|+|+||.+.. .....+.+++++ ..+++||.+||.|-.+|+.+
T Consensus 105 ~yD~l~ipGG~g~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~Gp~~La~a 154 (247)
T 3n7t_A 105 DYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPAMLPGI 154 (247)
T ss_dssp GCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGC
T ss_pred hCCEEEEeCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHh
Confidence 58999999998642 233445566655 34689999999999999765
No 58
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=97.58 E-value=0.00022 Score=65.34 Aligned_cols=104 Identities=11% Similarity=0.086 Sum_probs=66.7
Q ss_pred ccccccccccc---cCCCceEEEEECC-Cchh----HHHHHHHHHcCCEEEEEeCCc-----cCHHHHhccCCCEEEECC
Q 027062 10 SKSLYLDDKKS---KNNKNPIIVIDNY-DSFT----YNLCQYMGELGYHFEVYRNDE-----LTVEELKRKNPRGVLISP 76 (229)
Q Consensus 10 ~~~~~~~~~~~---~~~~~~ilvid~~-~~~~----~~~~~~l~~~g~~~~v~~~~~-----~~~~~l~~~~~dgiii~G 76 (229)
.+++.|+.... ....+||+|+-.. +++. ..+.++|+++|+++.++.... ...++.+...||+|||+|
T Consensus 512 ~~~~~ls~~~~~~~~l~g~kVaIL~a~~dGfe~~E~~~~~~~L~~aG~~V~vVs~~~g~~vD~t~~~~~s~~fDAVvlPG 591 (688)
T 2iuf_A 512 NTTAHIGAFGEKLAKLDGLKVGLLASVNKPASIAQGAKLQVALSSVGVDVVVVAERXANNVDETYSASDAVQFDAVVVAD 591 (688)
T ss_dssp CCCTTCSSSSSCCSCCTTCEEEEECCTTCHHHHHHHHHHHHHHGGGTCEEEEEESSCCTTCCEESTTCCGGGCSEEEECT
T ss_pred CCCcccccCcCCCCCCCCCEEEEEecCCCCCcHHHHHHHHHHHHHCCCEEEEEeccCCcccccchhcCCccccCeEEecC
Confidence 34555554432 2234678888641 3443 347888999999999986431 111222333689999999
Q ss_pred CCCC-------------------CCCcchHHHHHHH-hCCCCcEEEEehhHHHHHHH
Q 027062 77 GPGA-------------------PQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 113 (229)
Q Consensus 77 G~~~-------------------~~~~~~~~~~i~~-~~~~~PvlGIC~G~Qlla~a 113 (229)
|... ....+..+..+++ ...+|||-.||-|-++|..+
T Consensus 592 G~~g~~~~~~~~~~~~~~~~~~~L~~~~~~~~~v~~~~~~gKpIaAIc~ap~vL~~a 648 (688)
T 2iuf_A 592 GAEGLFGADSFTVEPSAGSGASTLYPAGRPLNILLDAFRFGKTVGALGSGSDALESG 648 (688)
T ss_dssp TCGGGCCTTTTTCCCCTTSCCCSSSCTTHHHHHHHHHHHHTCEEEEEGGGHHHHHHT
T ss_pred CCcccccccccccccccccchhhcccChHHHHHHHHHHHcCCEEEEECchHHHHHHc
Confidence 9532 2234445666654 34679999999999998764
No 59
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=97.56 E-value=0.00014 Score=62.72 Aligned_cols=92 Identities=17% Similarity=0.274 Sum_probs=61.3
Q ss_pred cCCCceEEEEECCCchh----HHHHHHHHHcCCEEEEEeCCc------------------------------cCHHHHhc
Q 027062 21 KNNKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDE------------------------------LTVEELKR 66 (229)
Q Consensus 21 ~~~~~~ilvid~~~~~~----~~~~~~l~~~g~~~~v~~~~~------------------------------~~~~~l~~ 66 (229)
...+++|+|+-. +++. ....+.|+++|+++.++..+. .+.+++..
T Consensus 202 ~~~~~ki~ill~-dg~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~ 280 (396)
T 3uk7_A 202 TGANKRILFLCG-DYMEDYEVKVPFQSLQALGCQVDAVCPEKKAGDRCPTAIHDFEGDQTYSEKPGHTFALTTNFDDLVS 280 (396)
T ss_dssp ECCCCEEEEECC-TTEEHHHHHHHHHHHHHHTCEEEEECTTCCTTCEECEEEEECCSSSSCEEEECCCEECCSCGGGCCG
T ss_pred hhccceEEEEec-CCCcchhHHHHHHHHHHCCCEEEEECCCCCCCcccccccccccccchhhhcCCceeeccCCHHHCCc
Confidence 345667888864 3443 235678899999998875431 11222222
Q ss_pred cCCCEEEECCCCCCC--CCcchHHHHHHH-hCCCCcEEEEehhHHHHHHH
Q 027062 67 KNPRGVLISPGPGAP--QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 113 (229)
Q Consensus 67 ~~~dgiii~GG~~~~--~~~~~~~~~i~~-~~~~~PvlGIC~G~Qlla~a 113 (229)
.+||.|||+||.+.. .......+++++ ..+++||.+||-|.++|+.+
T Consensus 281 ~~~D~livpGg~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~g~~~La~a 330 (396)
T 3uk7_A 281 SSYDALVIPGGRAPEYLALNEHVLNIVKEFMNSEKPVASICHGQQILAAA 330 (396)
T ss_dssp GGCSEEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEEGGGHHHHHHT
T ss_pred ccCCEEEECCCcchhhhccCHHHHHHHHHHHHCCCEEEEEchHHHHHHHc
Confidence 268999999997521 233445666665 35789999999999999986
No 60
>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}
Probab=97.52 E-value=0.00012 Score=57.74 Aligned_cols=90 Identities=8% Similarity=0.073 Sum_probs=55.2
Q ss_pred cCCCceEEEEECCCchh----HHHHHHHHHc-------CCEEEEEeCCc--------------cCHHHHhccCCCEEEEC
Q 027062 21 KNNKNPIIVIDNYDSFT----YNLCQYMGEL-------GYHFEVYRNDE--------------LTVEELKRKNPRGVLIS 75 (229)
Q Consensus 21 ~~~~~~ilvid~~~~~~----~~~~~~l~~~-------g~~~~v~~~~~--------------~~~~~l~~~~~dgiii~ 75 (229)
.+++++|+|+-. +++. ....+.|+.+ ++++.++..+. ...+++. ++|.|||+
T Consensus 5 ~~~~~~v~ill~-~g~~~~e~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~~v~~~~G~~v~~d~~~~~~~--~~D~livp 81 (209)
T 3er6_A 5 NKKNLRVVALAP-TGRYFASIISSLEILETAAEFAEFQGFMTHVVTPNNRPLIGRGGISVQPTAQWQSFD--FTNILIIG 81 (209)
T ss_dssp --CCEEEEEECC-CTTSCHHHHHHHHHHHHHHHHTTCSCEEEEEECTTSSCEEETTTEEEECSSCGGGCS--CCSEEEEC
T ss_pred CCCCeEEEEEEe-CCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCceecCCCeEEeCCcCccccC--CCCEEEEC
Confidence 344567777754 2332 2244556554 36777664331 1123332 68999999
Q ss_pred CCCCCC----CCcchHHHHHHHh-CCCCcEEEEehhHHHHHHH
Q 027062 76 PGPGAP----QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (229)
Q Consensus 76 GG~~~~----~~~~~~~~~i~~~-~~~~PvlGIC~G~Qlla~a 113 (229)
||.+.. .....+++++++. .++++|.+||-|..+|+.+
T Consensus 82 Gg~~~~~~~~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~a 124 (209)
T 3er6_A 82 SIGDPLESLDKIDPALFDWIRELHLKGSKIVAIDTGIFVVAKA 124 (209)
T ss_dssp CCSCHHHHGGGSCHHHHHHHHHHHHTTCEEEEETTHHHHHHHH
T ss_pred CCCCchhhhccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence 997532 2344556666653 4679999999999999987
No 61
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...
Probab=97.39 E-value=0.00021 Score=65.86 Aligned_cols=89 Identities=12% Similarity=0.112 Sum_probs=60.3
Q ss_pred CCceEEEEECCCchh----HHHHHHHHHcCCEEEEEeCCc--------------cCHHHHhccCCCEEEECCCCCCC--C
Q 027062 23 NKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDE--------------LTVEELKRKNPRGVLISPGPGAP--Q 82 (229)
Q Consensus 23 ~~~~ilvid~~~~~~----~~~~~~l~~~g~~~~v~~~~~--------------~~~~~l~~~~~dgiii~GG~~~~--~ 82 (229)
..++|+|+=. +++. ....+.|+++|+++.++.... ...++.....||+|||+|| +.. .
T Consensus 599 ~grKVaILla-DGfEe~El~~pvdaLr~AG~~V~vVS~~~g~V~gs~G~~V~aD~t~~~v~s~~fDALVVPGG-g~~~Lr 676 (753)
T 3ttv_A 599 KGRVVAILLN-DEVRSADLLAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCG-NIADIA 676 (753)
T ss_dssp TTCEEEEECC-TTCCHHHHHHHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEECCS-CGGGTT
T ss_pred CCCEEEEEec-CCCCHHHHHHHHHHHHHCCCEEEEEEcCCCeEEeCCCCEEecccchhhCCCcCCCEEEECCC-ChHHhh
Confidence 4567888743 3433 346788999999999875421 1122222235899999999 322 2
Q ss_pred CcchHHHHHHH-hCCCCcEEEEehhHHHHHHH
Q 027062 83 DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 113 (229)
Q Consensus 83 ~~~~~~~~i~~-~~~~~PvlGIC~G~Qlla~a 113 (229)
.....+.++++ ..+++||-+||-|-++|+.+
T Consensus 677 ~d~~vl~~Vre~~~~gKpIAAIC~Gp~lLa~A 708 (753)
T 3ttv_A 677 DNGDANYYLMEAYKHLKPIALAGDARKFKATI 708 (753)
T ss_dssp TCHHHHHHHHHHHHTTCCEEEEGGGGGGGGGG
T ss_pred hCHHHHHHHHHHHhcCCeEEEECchHHHHHHc
Confidence 44556677765 35789999999999999875
No 62
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=97.37 E-value=0.00029 Score=60.23 Aligned_cols=89 Identities=17% Similarity=0.220 Sum_probs=58.5
Q ss_pred CceEEEEECCCchh----HHHHHHHHHcCCEEEEEeCCccC----------------HHHHhccCCCEEEECCCCCCC--
Q 027062 24 KNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDELT----------------VEELKRKNPRGVLISPGPGAP-- 81 (229)
Q Consensus 24 ~~~ilvid~~~~~~----~~~~~~l~~~g~~~~v~~~~~~~----------------~~~l~~~~~dgiii~GG~~~~-- 81 (229)
+++|+|+-. ++|. ....+.|+.+|+++.++..+..+ .+++...+||.|||+||.+..
T Consensus 10 mkkV~ILl~-dgf~~~El~~p~dvL~~Ag~~v~vvS~~~g~~V~ss~G~~~i~~d~~l~~v~~~~~DaLiVPGG~g~~~l 88 (365)
T 3fse_A 10 KKKVAILIE-QAVEDTEFIIPCNGLKQAGFEVVVLGSRMNEKYKGKRGRLSTQADGTTTEAIASEFDAVVIPGGMAPDKM 88 (365)
T ss_dssp -CEEEEECC-TTBCHHHHHHHHHHHHHTTCEEEEEESSSSCCEECTTSCCEECCSEETTTCCGGGCSEEEECCBTHHHHH
T ss_pred ceEEEEEEC-CCCcHHHHHHHHHHHHHCCCEEEEEECCCCceeecCCCceEEeCCCCHhhCCCcCCCEEEEECCcchhhc
Confidence 457888754 3443 23567888999999887643211 112221258999999997421
Q ss_pred CCcchHHHHHHH-hCCCCcEEEEehhHHHHHHH
Q 027062 82 QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 113 (229)
Q Consensus 82 ~~~~~~~~~i~~-~~~~~PvlGIC~G~Qlla~a 113 (229)
.....+.+++++ ..++++|.+||-|..+|+.+
T Consensus 89 ~~~~~l~~~Lr~~~~~gk~IaAIC~G~~lLA~A 121 (365)
T 3fse_A 89 RRNPNTVRFVQEAMEQGKLVAAVCHGPQVLIEG 121 (365)
T ss_dssp TTCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred cCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHc
Confidence 233455666665 35789999999999999885
No 63
>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}
Probab=97.35 E-value=0.00046 Score=56.04 Aligned_cols=87 Identities=15% Similarity=0.166 Sum_probs=57.8
Q ss_pred ceEEEEECCCchh----HHHHHHH-HHcCCEEEEEeCCcc--------------CHHHHhccCCCEEEECCCC-CC--CC
Q 027062 25 NPIIVIDNYDSFT----YNLCQYM-GELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGP-GA--PQ 82 (229)
Q Consensus 25 ~~ilvid~~~~~~----~~~~~~l-~~~g~~~~v~~~~~~--------------~~~~l~~~~~dgiii~GG~-~~--~~ 82 (229)
++|+|+-+ +++. ....+.| +..|+++.++..+.. ..+++.. .||.|||+||. +. ..
T Consensus 24 ~~I~ill~-~gf~~~e~~~p~dvl~~~~~~~v~~vs~~~~~V~~~~G~~i~~d~~l~~~~~-~yD~liVPGG~~g~~~l~ 101 (253)
T 3ewn_A 24 EQIAMLVY-PGMTVMDLVGPHCMFGSLMGAKIYIVAKSLDPVTSDAGLAIVPTATFGTCPR-DLTVLFAPGGTDGTLAAA 101 (253)
T ss_dssp CEEEEECC-TTBCHHHHHHHHHHHTTSTTCEEEEEESSSSCEECTTSCEECCSEETTTSCS-SCSEEEECCBSHHHHHHT
T ss_pred eEEEEEeC-CCCcHHHHHHHHHHHHhCCCCEEEEEeCCCCeEEcCCCCEEeCCcCHHHcCC-CCCEEEECCCccchhhhc
Confidence 67888865 4443 2245667 567899988754321 1122222 47999999997 43 22
Q ss_pred CcchHHHHHHH-hCCCCcEEEEehhHHHHHHH
Q 027062 83 DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 113 (229)
Q Consensus 83 ~~~~~~~~i~~-~~~~~PvlGIC~G~Qlla~a 113 (229)
....+++++++ ..++++|.+||-|..+|+.+
T Consensus 102 ~~~~l~~~Lr~~~~~gk~IaaICtG~~lLa~A 133 (253)
T 3ewn_A 102 SDAETLAFMADRGARAKYITSVCSGSLILGAA 133 (253)
T ss_dssp TCHHHHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred cCHHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence 34556677765 46789999999999999886
No 64
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=97.31 E-value=0.00022 Score=57.62 Aligned_cols=46 Identities=13% Similarity=0.117 Sum_probs=34.4
Q ss_pred CCCEEEECCCCCCC---CCcchHHHHHHH-hCCCCcEEEEehhHHHHHHH
Q 027062 68 NPRGVLISPGPGAP---QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 113 (229)
Q Consensus 68 ~~dgiii~GG~~~~---~~~~~~~~~i~~-~~~~~PvlGIC~G~Qlla~a 113 (229)
+||+|+|+||.+.. .....+.+++++ ..+++||.+||-|-.+|+.+
T Consensus 98 ~yD~l~vpGG~~~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~G~~~La~a 147 (244)
T 3kkl_A 98 DYKVFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGPLLFDGL 147 (244)
T ss_dssp GCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred hCCEEEEcCCCchhhhcccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHh
Confidence 58999999997642 233445566655 34789999999999998765
No 65
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Probab=97.27 E-value=0.00052 Score=63.40 Aligned_cols=92 Identities=13% Similarity=0.144 Sum_probs=60.6
Q ss_pred CCceEEEEECCCchh----HHHHHHHHHcCCEEEEEeCCcc--------------CHHHHhccCCCEEEECCCCCCC---
Q 027062 23 NKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP--- 81 (229)
Q Consensus 23 ~~~~ilvid~~~~~~----~~~~~~l~~~g~~~~v~~~~~~--------------~~~~l~~~~~dgiii~GG~~~~--- 81 (229)
..++|+||-. +++. ....+.|+.+|+++.++..... ..+++....||+|||+||....
T Consensus 533 ~~rkVaILl~-dGfe~~El~~p~dvL~~AG~~V~ivS~~gg~V~ss~G~~v~~d~~l~~v~~~~yDaViVPGG~~~~~~l 611 (715)
T 1sy7_A 533 KSRRVAIIIA-DGYDNVAYDAAYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAETL 611 (715)
T ss_dssp TTCEEEEECC-TTBCHHHHHHHHHHHHHTTCEEEEEESCSSCEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHHHHH
T ss_pred CCCEEEEEEc-CCCCHHHHHHHHHHHHhcCCEEEEEECCCCceecCCCceEecccccccCCcccCCEEEEcCCcccHhhh
Confidence 3467888865 3432 2366788899999998864311 1122211258999999994322
Q ss_pred CCcchHHHHHHH-hCCCCcEEEEehhHHHHHHHhC
Q 027062 82 QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFG 115 (229)
Q Consensus 82 ~~~~~~~~~i~~-~~~~~PvlGIC~G~Qlla~alG 115 (229)
.....++.++++ ..+++||.+||-|..+|+.++|
T Consensus 612 ~~~~~l~~~Lr~~~~~gK~IaAIC~G~~lLA~AlG 646 (715)
T 1sy7_A 612 SKNGRALHWIREAFGHLKAIGATGEAVDLVAKAIA 646 (715)
T ss_dssp HTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHhCCCEEEEECHHHHHHHHccC
Confidence 233445566665 3577999999999999999864
No 66
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=97.25 E-value=0.00024 Score=57.27 Aligned_cols=46 Identities=15% Similarity=0.125 Sum_probs=34.1
Q ss_pred CCCEEEECCCCCCC---CCcchHHHHHHHh-CCCCcEEEEehhHHHHHHH
Q 027062 68 NPRGVLISPGPGAP---QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (229)
Q Consensus 68 ~~dgiii~GG~~~~---~~~~~~~~~i~~~-~~~~PvlGIC~G~Qlla~a 113 (229)
+||+|||+||.+.. .....+.+++++. .+++||.+||.|-.+|+.+
T Consensus 98 ~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~a 147 (243)
T 1rw7_A 98 DYQIFFASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAIFDGL 147 (243)
T ss_dssp GEEEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred hCcEEEECCCCCchhhcccCHHHHHHHHHHHHcCCEEEEECCCHHHHHhc
Confidence 58999999997642 2233455666653 4689999999999988775
No 67
>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A
Probab=97.22 E-value=0.00068 Score=54.22 Aligned_cols=86 Identities=10% Similarity=0.058 Sum_probs=57.1
Q ss_pred ceEEEEECCCchh----HHHHHHHHH-cCCEEEEEeCCcc--------------CHHHHhccCCCEEEECCCCCCC--CC
Q 027062 25 NPIIVIDNYDSFT----YNLCQYMGE-LGYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP--QD 83 (229)
Q Consensus 25 ~~ilvid~~~~~~----~~~~~~l~~-~g~~~~v~~~~~~--------------~~~~l~~~~~dgiii~GG~~~~--~~ 83 (229)
++|+|+-+ +++. ....+.|+. .|+++.++..+.. ..+++. ++|.|+|+||++.. ..
T Consensus 6 ~~V~ill~-~gf~~~e~~~p~evl~~~~~~~v~~vs~~~~~V~~~~G~~v~~d~~l~~~~--~~D~livpGG~g~~~~~~ 82 (231)
T 3noq_A 6 VQIGFLLF-PEVQQLDLTGPHDVLASLPDVQVHLIWKEPGPVVASSGLVLQATTSFADCP--PLDVICIPGGTGVGALME 82 (231)
T ss_dssp EEEEEECC-TTCCHHHHHHHHHHHTTSTTEEEEEEESSSEEEECTTSCEEEECEETTTCC--CCSEEEECCSTTHHHHTT
T ss_pred EEEEEEEe-CCCcHHHHHHHHHHHHcCCCCEEEEEECCCCcEEcCCCCEEecccChhHCC--cCCEEEECCCCChhhhcc
Confidence 57877754 3443 235567777 6888877654311 112222 58999999997642 23
Q ss_pred cchHHHHHHH-hCCCCcEEEEehhHHHHHHH
Q 027062 84 SGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 113 (229)
Q Consensus 84 ~~~~~~~i~~-~~~~~PvlGIC~G~Qlla~a 113 (229)
...+++++++ ..++++|.+||-|..+|+.+
T Consensus 83 ~~~l~~~lr~~~~~g~~v~aiC~G~~~La~a 113 (231)
T 3noq_A 83 DPQALAFIRQQAARARYVTSVSTGSLVLGAA 113 (231)
T ss_dssp CHHHHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred CHHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence 4456677765 46789999999999999875
No 68
>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}
Probab=96.95 E-value=0.00034 Score=55.19 Aligned_cols=89 Identities=13% Similarity=0.246 Sum_probs=54.9
Q ss_pred CCCceEEEEECCCchh----HHHHHHHHHc--CCEEEEEeCCcc--------------CHHHHhccCCCEEEECCCCCCC
Q 027062 22 NNKNPIIVIDNYDSFT----YNLCQYMGEL--GYHFEVYRNDEL--------------TVEELKRKNPRGVLISPGPGAP 81 (229)
Q Consensus 22 ~~~~~ilvid~~~~~~----~~~~~~l~~~--g~~~~v~~~~~~--------------~~~~l~~~~~dgiii~GG~~~~ 81 (229)
+.+++|+|+-. +++. ....+.|+.+ ++++.++..+.. ..++.. .+|.|+|+||.+..
T Consensus 2 ~~~~~V~ill~-~g~~~~e~~~~~~~l~~a~~~~~v~~vs~~~~~V~~~~G~~v~~d~~~~~~~--~~D~livpGG~~~~ 78 (211)
T 3mgk_A 2 SLSYRIDVLLF-NKFETLDVFGPVEIFGNLQDDFELNFISSDGGLVESSQKVRVETSLYTRDEN--IEKILFVPGGSGTR 78 (211)
T ss_dssp --CEEEEEECC-TTCCHHHHHHHHHHHTTCTTTEEEEEECSSCEEEECTTCCEEEEBCCCCCSS--SEEEEEECCSTHHH
T ss_pred CCceEEEEEEe-CCcchhHHHHHHHHHHhCCCceEEEEEECCCCeEecCCCcEEEeccchhhCC--CCCEEEECCCcchh
Confidence 35677888854 3432 2356777776 477776643210 111111 36999999997532
Q ss_pred --CCcchHHHHHHHh-CCCCcEEEEehhHHHHHHH
Q 027062 82 --QDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEA 113 (229)
Q Consensus 82 --~~~~~~~~~i~~~-~~~~PvlGIC~G~Qlla~a 113 (229)
.....+++++++. .++++|.+||-|..+|+.+
T Consensus 79 ~~~~~~~~~~~l~~~~~~~k~iaaiC~G~~~La~a 113 (211)
T 3mgk_A 79 EKVNDDNFINFIGNMVKESKYIISVCTGSALLSKA 113 (211)
T ss_dssp HHTTCHHHHHHHHHHHHHCSEEEECTTHHHHHHHT
T ss_pred hhcCCHHHHHHHHHHHHcCCEEEEEchHHHHHHhc
Confidence 2334456666653 4679999999999999875
No 69
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=96.88 E-value=0.0016 Score=53.87 Aligned_cols=47 Identities=13% Similarity=0.117 Sum_probs=34.5
Q ss_pred CCCEEEECCCCCCCC---CcchHHHHHHH-hCCCCcEEEEehhHHHHHHHh
Q 027062 68 NPRGVLISPGPGAPQ---DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAF 114 (229)
Q Consensus 68 ~~dgiii~GG~~~~~---~~~~~~~~i~~-~~~~~PvlGIC~G~Qlla~al 114 (229)
+||+|||+||.+... ....+.+++++ ..++++|.+||-|-.+|+.+-
T Consensus 145 ~yD~livPGG~g~~~~l~~~~~l~~~l~~~~~~gk~VaaIC~Gp~~La~a~ 195 (291)
T 1n57_A 145 EYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALR 195 (291)
T ss_dssp SEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGGT
T ss_pred cCCEEEecCCcchhhhhhhCHHHHHHHHHHHHcCCEEEEECccHHHHHhhc
Confidence 689999999976432 23345566665 346799999999999877753
No 70
>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A
Probab=96.82 E-value=0.0013 Score=50.99 Aligned_cols=86 Identities=14% Similarity=0.062 Sum_probs=50.7
Q ss_pred CceEEEEECCCchh----HHHHHHHHHcCCEEEEEeCCc-----------------cCHHHH-----hccCCCEEEECCC
Q 027062 24 KNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYRNDE-----------------LTVEEL-----KRKNPRGVLISPG 77 (229)
Q Consensus 24 ~~~ilvid~~~~~~----~~~~~~l~~~g~~~~v~~~~~-----------------~~~~~l-----~~~~~dgiii~GG 77 (229)
++||+|+=. ++|. -...+.|+++|+++.++.... ...+++ ...+||+|||+||
T Consensus 4 M~kV~ill~-dGfe~~E~~~p~~vl~~ag~~v~~~s~~~~~~~~v~~~~g~~v~~d~~~~~~~~~d~~~~~yD~lvvPGG 82 (194)
T 4gdh_A 4 MVKVCLFVA-DGTDEIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIAIIPGG 82 (194)
T ss_dssp -CCEEEEEE-TTCCHHHHHHHHHHHHHTTCCEEEEEESSCTTCEEECTTSCEEECSEEGGGSCCHHHHHHHCSEEEECCC
T ss_pred CCEEEEEEC-CCcCHHHHHHHHHHHHHCCCeEEEEEEcCCCCceEecCCCceeeccccHhhCCccccccccCCEEEECCC
Confidence 456777753 3442 224567889999886553210 011111 1124799999999
Q ss_pred CCCC---CCcchHHHHHHHh-C-CCCcEEEEehhHHHH
Q 027062 78 PGAP---QDSGISLQTVLEL-G-PTVPLFGVCMGLQCI 110 (229)
Q Consensus 78 ~~~~---~~~~~~~~~i~~~-~-~~~PvlGIC~G~Qll 110 (229)
.... .+...+.+++++. . .++++-.||-|..++
T Consensus 83 ~~~~~~l~~~~~l~~~l~~~~~~~~k~iaaiC~g~~l~ 120 (194)
T 4gdh_A 83 GLGAKTLSTTPFVQQVVKEFYKKPNKWIGMICAGTLTA 120 (194)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTTCTTCEEEEEGGGGHHH
T ss_pred chhHhHhhhCHHHHHHHHHhhhcCCceEEeecccccch
Confidence 5322 2345566777764 3 468999999998443
No 71
>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}
Probab=96.75 E-value=0.0014 Score=52.58 Aligned_cols=87 Identities=21% Similarity=0.362 Sum_probs=54.0
Q ss_pred CCCceEEEEECCCchh----HHHHHHHHHcC--CEEEEEeCCc--------------cCHHHHhccCCCEEEECCC-CCC
Q 027062 22 NNKNPIIVIDNYDSFT----YNLCQYMGELG--YHFEVYRNDE--------------LTVEELKRKNPRGVLISPG-PGA 80 (229)
Q Consensus 22 ~~~~~ilvid~~~~~~----~~~~~~l~~~g--~~~~v~~~~~--------------~~~~~l~~~~~dgiii~GG-~~~ 80 (229)
..+++|+|+-. +++. ....+.|+..+ +++.++. +. ...++. .++|.|||+|| ++.
T Consensus 18 ~~~~kV~ill~-dGf~~~e~~~p~dvl~~~~~~~~v~~vs-~~~~V~ss~G~~v~~d~~l~~~--~~~D~liVPGG~~g~ 93 (236)
T 3bhn_A 18 QGMYKVGIVLF-DDFTDVDFFLMNDLLGRTSDSWTVRILG-TKPEHHSQLGMTVKTDGHVSEV--KEQDVVLITSGYRGI 93 (236)
T ss_dssp --CEEEEEECC-TTBCHHHHHHHHHHHTTCSSSEEEEEEE-SSSEEEBTTCCEEECSEEGGGG--GGCSEEEECCCTTHH
T ss_pred CCCCEEEEEeC-CCChHHHHHHHHHHHHcCCCCEEEEEEE-CCCcEEecCCcEEecCcccccc--cCCCEEEEcCCccCH
Confidence 34557888754 3432 23456676655 6777664 31 112222 25799999999 443
Q ss_pred C--CCcchHHHHHHHhCCCC-cEEEEehhHHHHHHH
Q 027062 81 P--QDSGISLQTVLELGPTV-PLFGVCMGLQCIGEA 113 (229)
Q Consensus 81 ~--~~~~~~~~~i~~~~~~~-PvlGIC~G~Qlla~a 113 (229)
. .....+.+++ ...+++ +|.+||-|..+|+.+
T Consensus 94 ~~l~~~~~l~~~L-~~~~~~~~IaaIC~G~~lLa~A 128 (236)
T 3bhn_A 94 PAALQDENFMSAL-KLDPSRQLIGSICAGSFVLHEL 128 (236)
T ss_dssp HHHHTCHHHHHHC-CCCTTTCEEEEETTHHHHHHHT
T ss_pred hhhccCHHHHHHH-HhCCCCCEEEEEcHHHHHHHHc
Confidence 2 1234456666 656666 999999999999986
No 72
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=95.76 E-value=0.021 Score=40.71 Aligned_cols=81 Identities=11% Similarity=0.090 Sum_probs=51.5
Q ss_pred CCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCc-chHHHHHHHhCCCCcE
Q 027062 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPL 100 (229)
Q Consensus 22 ~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~-~~~~~~i~~~~~~~Pv 100 (229)
..+++|+|||........+.+.|+..|+++..........+.+....+|.||+-- .+... ..+++.+++.....|+
T Consensus 2 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~---~~~~~g~~~~~~l~~~~~~~pi 78 (142)
T 2qxy_A 2 SLTPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRREKIDLVFVDV---FEGEESLNLIRRIREEFPDTKV 78 (142)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTSCCSEEEEEC---TTTHHHHHHHHHHHHHCTTCEE
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhccCCCEEEEeC---CCCCcHHHHHHHHHHHCCCCCE
Confidence 4567899999755566778899999999887554321222334444688888743 12111 2345666666667999
Q ss_pred EEEeh
Q 027062 101 FGVCM 105 (229)
Q Consensus 101 lGIC~ 105 (229)
+.+.-
T Consensus 79 i~ls~ 83 (142)
T 2qxy_A 79 AVLSA 83 (142)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 98864
No 73
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=95.49 E-value=0.018 Score=47.24 Aligned_cols=87 Identities=22% Similarity=0.352 Sum_probs=50.7
Q ss_pred CcccccccccccccCCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchH
Q 027062 8 PISKSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGIS 87 (229)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~ 87 (229)
||.+..+--.+.- ..|+|+|+-+.+.-...+.++|++.|+++.+.... .+.+. ++|.+|..||.|. +
T Consensus 15 ~~~~~~~~~~~~~--~~mki~iv~~~~~~~~~l~~~L~~~g~~v~~~~~~---~~~~~--~~DlvIvlGGDGT------~ 81 (278)
T 1z0s_A 15 PTTENLYFQGGGG--GGMRAAVVYKTDGHVKRIEEALKRLEVEVELFNQP---SEELE--NFDFIVSVGGDGT------I 81 (278)
T ss_dssp -----------------CEEEEEESSSTTHHHHHHHHHHTTCEEEEESSC---CGGGG--GSSEEEEEECHHH------H
T ss_pred CccceEEEcCCCc--cceEEEEEeCCcHHHHHHHHHHHHCCCEEEEcccc---ccccC--CCCEEEEECCCHH------H
Confidence 5555555332221 13679999775444677899999999998765432 12233 5699999999653 4
Q ss_pred HHHHHHhCCCCcEEEEehhH
Q 027062 88 LQTVLELGPTVPLFGVCMGL 107 (229)
Q Consensus 88 ~~~i~~~~~~~PvlGIC~G~ 107 (229)
+...+.+...+||+||-.|.
T Consensus 82 L~aa~~~~~~~PilGIN~G~ 101 (278)
T 1z0s_A 82 LRILQKLKRCPPIFGINTGR 101 (278)
T ss_dssp HHHHTTCSSCCCEEEEECSS
T ss_pred HHHHHHhCCCCcEEEECCCC
Confidence 55555543229999998874
No 74
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=95.46 E-value=0.026 Score=46.53 Aligned_cols=87 Identities=11% Similarity=0.177 Sum_probs=56.3
Q ss_pred CceEEEEECCCc----hhHHHHHHHHHcCC-EEEEEeCCcc----C---HHHHhccCCCEEEECCCCCCCC----CcchH
Q 027062 24 KNPIIVIDNYDS----FTYNLCQYMGELGY-HFEVYRNDEL----T---VEELKRKNPRGVLISPGPGAPQ----DSGIS 87 (229)
Q Consensus 24 ~~~ilvid~~~~----~~~~~~~~l~~~g~-~~~v~~~~~~----~---~~~l~~~~~dgiii~GG~~~~~----~~~~~ 87 (229)
..+|++|-..+. +...+.++++++|+ .+.++..... + .+.+. +.|+|+++||..... ....+
T Consensus 56 ~~~I~~IptAs~~~~~~~~~~~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~l~--~ad~I~v~GGnt~~l~~~l~~t~l 133 (291)
T 3en0_A 56 DAIIGIIPSASREPLLIGERYQTIFSDMGVKELKVLDIRDRAQGDDSGYRLFVE--QCTGIFMTGGDQLRLCGLLADTPL 133 (291)
T ss_dssp GCEEEEECTTCSSHHHHHHHHHHHHHHHCCSEEEECCCCSGGGGGCHHHHHHHH--HCSEEEECCSCHHHHHHHHTTCHH
T ss_pred CCeEEEEeCCCCChHHHHHHHHHHHHHcCCCeeEEEEecCccccCCHHHHHHHh--cCCEEEECCCCHHHHHHHHHhCCH
Confidence 478999965433 34567788899999 7777764311 1 12344 469999999864211 11223
Q ss_pred HHHHHH-hCCC-CcEEEEehhHHHHHH
Q 027062 88 LQTVLE-LGPT-VPLFGVCMGLQCIGE 112 (229)
Q Consensus 88 ~~~i~~-~~~~-~PvlGIC~G~Qlla~ 112 (229)
.+.+++ +.++ .|+.|+|.|+-+++.
T Consensus 134 ~~~L~~~~~~G~~~~~GtSAGA~i~~~ 160 (291)
T 3en0_A 134 MDRIRQRVHNGEISLAGTSAGAAVMGH 160 (291)
T ss_dssp HHHHHHHHHTTSSEEEEETHHHHTTSS
T ss_pred HHHHHHHHHCCCeEEEEeCHHHHhhhH
Confidence 445554 3566 999999999988754
No 75
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=95.41 E-value=0.086 Score=36.74 Aligned_cols=82 Identities=16% Similarity=0.199 Sum_probs=51.1
Q ss_pred CCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhcc-CCCEEEECCCCCCCC--CcchHHHHHHHhCCCC
Q 027062 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRK-NPRGVLISPGPGAPQ--DSGISLQTVLELGPTV 98 (229)
Q Consensus 22 ~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~-~~dgiii~GG~~~~~--~~~~~~~~i~~~~~~~ 98 (229)
..+++|+|+|........+.+.|+..|+++..........+.+... .+|.+|+--. .+. +.-.+++.+++.....
T Consensus 3 m~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~--l~~~~~g~~~~~~l~~~~~~~ 80 (132)
T 2rdm_A 3 LEAVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSGAAIDGVVTDIR--FCQPPDGWQVARVAREIDPNM 80 (132)
T ss_dssp CSSCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCCEEEEESC--CSSSSCHHHHHHHHHHHCTTC
T ss_pred CCCceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcCCCCCEEEEeee--CCCCCCHHHHHHHHHhcCCCC
Confidence 3467899999755566778888999999887654321122334444 6888877322 121 2223566666666678
Q ss_pred cEEEEeh
Q 027062 99 PLFGVCM 105 (229)
Q Consensus 99 PvlGIC~ 105 (229)
|++-+.-
T Consensus 81 ~ii~~s~ 87 (132)
T 2rdm_A 81 PIVYISG 87 (132)
T ss_dssp CEEEEES
T ss_pred CEEEEeC
Confidence 8887753
No 76
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=95.34 E-value=0.06 Score=38.13 Aligned_cols=87 Identities=9% Similarity=0.157 Sum_probs=53.5
Q ss_pred ccCCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCc-chHHHHHHH--hCC
Q 027062 20 SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLE--LGP 96 (229)
Q Consensus 20 ~~~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~-~~~~~~i~~--~~~ 96 (229)
++..+++|+|||........+.+.|++.|+++..........+.+....+|.||+-=. .+... -.+++.+++ ...
T Consensus 2 ~~~~~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~--l~~~~g~~~~~~l~~~~~~~ 79 (140)
T 3grc_A 2 SLAPRPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRPYAAMTVDLN--LPDQDGVSLIRALRRDSRTR 79 (140)
T ss_dssp ---CCSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHSCCSEEEECSC--CSSSCHHHHHHHHHTSGGGT
T ss_pred CCCCCCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHhCcccC
Confidence 3456789999997555667788899999998766553212223344457898887321 12222 245666665 446
Q ss_pred CCcEEEEehhHH
Q 027062 97 TVPLFGVCMGLQ 108 (229)
Q Consensus 97 ~~PvlGIC~G~Q 108 (229)
+.|++-+.-...
T Consensus 80 ~~~ii~~s~~~~ 91 (140)
T 3grc_A 80 DLAIVVVSANAR 91 (140)
T ss_dssp TCEEEEECTTHH
T ss_pred CCCEEEEecCCC
Confidence 789998875443
No 77
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=94.90 E-value=1.2 Score=35.74 Aligned_cols=190 Identities=12% Similarity=0.107 Sum_probs=97.0
Q ss_pred cCCCceEEEEECCC--c------------hhHHHHHHHHHcCCEEEEEeCCc----cCHHHHhccCCCEEEECCCC-CCC
Q 027062 21 KNNKNPIIVIDNYD--S------------FTYNLCQYMGELGYHFEVYRNDE----LTVEELKRKNPRGVLISPGP-GAP 81 (229)
Q Consensus 21 ~~~~~~ilvid~~~--~------------~~~~~~~~l~~~g~~~~v~~~~~----~~~~~l~~~~~dgiii~GG~-~~~ 81 (229)
|....+|||..-+- + ....+.+.|++.|+++.+...++ .+.+.|+ ++|.||+.|.. +..
T Consensus 4 ~~~~~~vlv~~~~~h~~~~~~v~~~~p~g~~~~i~~~L~~~gf~V~~~t~dd~~~~~~~~~L~--~~DvvV~~~~~~~~~ 81 (252)
T 1t0b_A 4 MTTPIRVVVWNEFRHEKKDEQVRAIYPEGMHTVIASYLAEAGFDAATAVLDEPEHGLTDEVLD--RCDVLVWWGHIAHDE 81 (252)
T ss_dssp --CCCEEEEEECCCHHHHCHHHHHHCTTCHHHHHHHHHHHTTCEEEEEESSSGGGGCCHHHHH--TCSEEEEECSSCGGG
T ss_pred cCCCcEEEEECCccccccchhhhccCchHHHHHHHHHHhhCCcEEEEEeccCccccCCHhHHh--cCCEEEEecCCCCCc
Confidence 34467899997431 1 11235788889999999876332 2223455 67999985421 111
Q ss_pred CCcchHHHHHHH-hCCCCcEEEEehhH--HHHHHHhCCeeeecCCccccCccceeEeccCCCCcccccCCCceeeeeeec
Q 027062 82 QDSGISLQTVLE-LGPTVPLFGVCMGL--QCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHS 158 (229)
Q Consensus 82 ~~~~~~~~~i~~-~~~~~PvlGIC~G~--Qlla~alGg~v~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~H~ 158 (229)
- .....+.+.+ ..++..++||=.|+ +-....+||... .+.. ..+....+.+ ....+|+.++++..+.+..-.-
T Consensus 82 l-~~~~~~al~~~V~~GgG~vgiH~a~~~~~y~~llGg~f~-~~~~-~~~~~~~v~v-~~~~HPit~gl~~~f~~~dee~ 157 (252)
T 1t0b_A 82 V-KDEVVERVHRRVLEGMGLIVLHSGHFSKIFKKLMGTTCN-LKWR-EADEKERLWV-VAPGHPIVEGIGPYIELEQEEM 157 (252)
T ss_dssp S-CHHHHHHHHHHHHTTCEEEEEGGGGGSHHHHHHHCSCCC-CEEE-EEEEEEEEEE-SCTTSGGGTTCCSEEEEEEEEE
T ss_pred C-CHHHHHHHHHHHHcCCCEEEEcccCCcHHHHhhhCCccc-CCCc-cCCceEEEEE-CCCCChhhcCCCCCcEecccee
Confidence 1 2222333433 45789999996653 445567887742 1110 0122222333 2347999999987765542111
Q ss_pred e--eeeccCCCCCCeEEEE-EcCCC----ceEEEEeCCCCcEEEE-ecc-CCCCC-CCchHHHHHHHHHHHH
Q 027062 159 L--VIEKESFPSDALEVTA-WTEDG----LIMAARHKKYKHLQGV-QFH-PESII-TTEGKTIVRNFIKMIV 220 (229)
Q Consensus 159 ~--~v~~~~l~~~~~~~la-~~~~~----~i~a~~~~~~~~i~g~-QfH-PE~~~-~~~~~~i~~~f~~~~~ 220 (229)
+ ..+ .+..+..++. +.+++ ...+.....++ ++.+ ..| ++.+. .+.-++++.|=+..+.
T Consensus 158 Y~~~~~---~p~~~~~vl~~~~~~G~~~~~p~~w~~g~GR-vfY~~lGH~~~~~~~~p~~~~ll~~gI~WAa 225 (252)
T 1t0b_A 158 YGEFFD---IPEPDETIFISWFEGGEVFRSGCTFTRGKGK-IFYFRPGHETYPTYHHPDVLKVIANAVRWAA 225 (252)
T ss_dssp EESCCC---SCCCSEEEEEEEETTSCEEEEEEEEEETTEE-EEEECCCCTTSCGGGCHHHHHHHHHHHHHHC
T ss_pred eeeccC---CCCCCceEEeeeccCCccccEEEEEEECCcc-EEEECCCCCCCcccCCHHHHHHHHHHHHHHc
Confidence 1 122 0123344443 33344 23344455444 6666 599 55232 2334455555555443
No 78
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=94.68 E-value=0.1 Score=36.72 Aligned_cols=80 Identities=9% Similarity=0.036 Sum_probs=50.1
Q ss_pred ccCCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCC-CC
Q 027062 20 SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGP-TV 98 (229)
Q Consensus 20 ~~~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~-~~ 98 (229)
....+++|+|||........+.+.|+..|+++............+....+|.+| .++ .+.-.+++.+++. . ..
T Consensus 14 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi-~~~----~~g~~~~~~l~~~-~~~~ 87 (137)
T 2pln_A 14 VPRGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVM-VSD----KNALSFVSRIKEK-HSSI 87 (137)
T ss_dssp -CTTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHSCCSEEE-ECS----TTHHHHHHHHHHH-STTS
T ss_pred cCCCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHcCCCCEEE-EcC----ccHHHHHHHHHhc-CCCc
Confidence 345567899999755566778889999999887554321122233444688888 221 1122345666665 6 78
Q ss_pred cEEEEeh
Q 027062 99 PLFGVCM 105 (229)
Q Consensus 99 PvlGIC~ 105 (229)
|++-+.-
T Consensus 88 ~ii~ls~ 94 (137)
T 2pln_A 88 VVLVSSD 94 (137)
T ss_dssp EEEEEES
T ss_pred cEEEEeC
Confidence 9988764
No 79
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=94.65 E-value=0.14 Score=36.26 Aligned_cols=82 Identities=15% Similarity=0.265 Sum_probs=47.7
Q ss_pred CCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhc-cCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcE
Q 027062 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL 100 (229)
Q Consensus 22 ~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~-~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~Pv 100 (229)
..+++|+|||........+.+.|+..|+++..........+.+.. ..+|.||+--.-..-.+.-.+++.+++. ...|+
T Consensus 3 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~-~~~~i 81 (140)
T 3h5i_A 3 LKDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQI-SELPV 81 (140)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHH-CCCCE
T ss_pred CCCcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhC-CCCCE
Confidence 346789999975556778889999999988765432122233433 4688887732110001122345556554 56787
Q ss_pred EEEe
Q 027062 101 FGVC 104 (229)
Q Consensus 101 lGIC 104 (229)
+-+.
T Consensus 82 i~ls 85 (140)
T 3h5i_A 82 VFLT 85 (140)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7665
No 80
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=94.64 E-value=0.036 Score=39.22 Aligned_cols=85 Identities=16% Similarity=0.254 Sum_probs=50.4
Q ss_pred cccCCCceEEEEECCCchhHHHHHHHHHcC-CEEEEEeCCccCHHHHhccCCCEEEECCCCCCCC-CcchHHHHHHHhCC
Q 027062 19 KSKNNKNPIIVIDNYDSFTYNLCQYMGELG-YHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELGP 96 (229)
Q Consensus 19 ~~~~~~~~ilvid~~~~~~~~~~~~l~~~g-~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~-~~~~~~~~i~~~~~ 96 (229)
+.+..+++|+|+|........+...|+..| +++..........+.+....+|.||+--. .+. +.-.+++.+++...
T Consensus 9 ~~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~ 86 (135)
T 3snk_A 9 VTPTKRKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPADTRPGIVILDLG--GGDLLGKPGIVEARALWA 86 (135)
T ss_dssp ----CCEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTTCCCSEEEEEEE--TTGGGGSTTHHHHHGGGT
T ss_pred ccCCCCcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhccCCCEEEEeCC--CCCchHHHHHHHHHhhCC
Confidence 445566789999975556677889999999 88775543211112233336888877311 111 11235667776656
Q ss_pred CCcEEEEeh
Q 027062 97 TVPLFGVCM 105 (229)
Q Consensus 97 ~~PvlGIC~ 105 (229)
..|++-+.-
T Consensus 87 ~~~ii~~s~ 95 (135)
T 3snk_A 87 TVPLIAVSD 95 (135)
T ss_dssp TCCEEEEES
T ss_pred CCcEEEEeC
Confidence 789987764
No 81
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=94.63 E-value=0.2 Score=34.81 Aligned_cols=82 Identities=13% Similarity=0.154 Sum_probs=51.1
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEE
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG 102 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlG 102 (229)
.+++|+|+|........+.+.|+..|+.+..........+.+....+|.+|+--.-. ..+.-.+++.+++.....|++-
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~-~~~g~~~~~~l~~~~~~~~ii~ 84 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMP-RMNGLKLLEHIRNRGDQTPVLV 84 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTCCCSEEEECCC------CHHHHHHHHHTTCCCCEEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCC-CCCHHHHHHHHHhcCCCCCEEE
Confidence 457899999755566778899999999887654321122334444688888742211 1122345667777666789887
Q ss_pred Eeh
Q 027062 103 VCM 105 (229)
Q Consensus 103 IC~ 105 (229)
+.-
T Consensus 85 ~t~ 87 (130)
T 3eod_A 85 ISA 87 (130)
T ss_dssp EEC
T ss_pred EEc
Confidence 764
No 82
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=94.55 E-value=0.11 Score=37.73 Aligned_cols=83 Identities=16% Similarity=0.188 Sum_probs=51.8
Q ss_pred cCCCceEEEEECCCchhHHHHHHHHHcCCEEE-EEeCCccCHHHHhcc--CCCEEEECCCCCCCC-CcchHHHHHHHhCC
Q 027062 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFE-VYRNDELTVEELKRK--NPRGVLISPGPGAPQ-DSGISLQTVLELGP 96 (229)
Q Consensus 21 ~~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~-v~~~~~~~~~~l~~~--~~dgiii~GG~~~~~-~~~~~~~~i~~~~~ 96 (229)
...+++|+|||........+.+.|++.|+++. .........+.+... .+|.||+--. .+. +.-.+++.+++...
T Consensus 33 ~~~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~--l~~~~g~~~~~~lr~~~~ 110 (157)
T 3hzh_A 33 TGIPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXIT--MPKMDGITCLSNIMEFDK 110 (157)
T ss_dssp TTEECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSS--CSSSCHHHHHHHHHHHCT
T ss_pred CCCceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEecc--CCCccHHHHHHHHHhhCC
Confidence 33457899999755566778899999999886 443221122334444 6788877322 112 22345677777667
Q ss_pred CCcEEEEeh
Q 027062 97 TVPLFGVCM 105 (229)
Q Consensus 97 ~~PvlGIC~ 105 (229)
..||+-+.-
T Consensus 111 ~~~ii~ls~ 119 (157)
T 3hzh_A 111 NARVIMISA 119 (157)
T ss_dssp TCCEEEEES
T ss_pred CCcEEEEec
Confidence 889987774
No 83
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=94.50 E-value=0.14 Score=37.04 Aligned_cols=81 Identities=19% Similarity=0.210 Sum_probs=50.8
Q ss_pred CCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCc-chHHHHHHHhC--CCC
Q 027062 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELG--PTV 98 (229)
Q Consensus 22 ~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~-~~~~~~i~~~~--~~~ 98 (229)
+.+++|+|||........+.+.|+..|+.+..........+.+....+|.||+-=. .+... -.+++.+++.. ..+
T Consensus 5 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlii~D~~--l~~~~g~~~~~~lr~~~~~~~~ 82 (154)
T 3gt7_A 5 NRAGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRPDLIISDVL--MPEMDGYALCRWLKGQPDLRTI 82 (154)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTCCCSEEEEESC--CSSSCHHHHHHHHHHSTTTTTS
T ss_pred cCCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHhCCCcCCC
Confidence 45678999997555677788999999998866543212223344447898887421 12222 24566666643 578
Q ss_pred cEEEEe
Q 027062 99 PLFGVC 104 (229)
Q Consensus 99 PvlGIC 104 (229)
|++-+.
T Consensus 83 pii~~s 88 (154)
T 3gt7_A 83 PVILLT 88 (154)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 998877
No 84
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=94.42 E-value=0.13 Score=36.32 Aligned_cols=81 Identities=15% Similarity=0.280 Sum_probs=49.7
Q ss_pred CCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCC-CcchHHHHHHH--hCCCC
Q 027062 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLE--LGPTV 98 (229)
Q Consensus 22 ~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~-~~~~~~~~i~~--~~~~~ 98 (229)
..+++|+|||........+.+.|+..|+++..........+.+....+|.+|+--. .+. +...+++.+++ .....
T Consensus 5 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~--l~~~~g~~~~~~l~~~~~~~~~ 82 (142)
T 3cg4_A 5 EHKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGFSGVVLLDIM--MPGMDGWDTIRAILDNSLEQGI 82 (142)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCCCEEEEEESC--CSSSCHHHHHHHHHHTTCCTTE
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhcCCCEEEEeCC--CCCCCHHHHHHHHHhhcccCCC
Confidence 35678999997555677888999999998765543211223334446777776322 111 22245666766 45678
Q ss_pred cEEEEe
Q 027062 99 PLFGVC 104 (229)
Q Consensus 99 PvlGIC 104 (229)
|++-+.
T Consensus 83 pii~~s 88 (142)
T 3cg4_A 83 AIVMLT 88 (142)
T ss_dssp EEEEEE
T ss_pred CEEEEE
Confidence 888765
No 85
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=94.24 E-value=0.13 Score=36.18 Aligned_cols=84 Identities=14% Similarity=0.141 Sum_probs=49.5
Q ss_pred cCCCceEEEEECCCchhHHHHHHHHH-cCCE-EEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHH--hCC
Q 027062 21 KNNKNPIIVIDNYDSFTYNLCQYMGE-LGYH-FEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE--LGP 96 (229)
Q Consensus 21 ~~~~~~ilvid~~~~~~~~~~~~l~~-~g~~-~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~--~~~ 96 (229)
+..+++|+|+|........+.+.|+. .|++ +..........+.+....+|.||+--.-. ..+.-.+++.+++ ...
T Consensus 5 ~~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~-~~~g~~~~~~l~~~~~~~ 83 (143)
T 3cnb_A 5 VKNDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMMV-GMDGFSICHRIKSTPATA 83 (143)
T ss_dssp ----CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTCCSEEEEETTCT-TSCHHHHHHHHHTSTTTT
T ss_pred ccCCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhcCCCEEEEecccC-CCcHHHHHHHHHhCcccc
Confidence 45578899999755566778889998 8998 55554321122233444688888743211 1122235666666 446
Q ss_pred CCcEEEEeh
Q 027062 97 TVPLFGVCM 105 (229)
Q Consensus 97 ~~PvlGIC~ 105 (229)
..|++-+.-
T Consensus 84 ~~~ii~~s~ 92 (143)
T 3cnb_A 84 NIIVIAMTG 92 (143)
T ss_dssp TSEEEEEES
T ss_pred CCcEEEEeC
Confidence 789988763
No 86
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=94.07 E-value=0.052 Score=37.97 Aligned_cols=83 Identities=12% Similarity=0.107 Sum_probs=46.5
Q ss_pred ccCCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCc-chHHHHHHHhC--C
Q 027062 20 SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELG--P 96 (229)
Q Consensus 20 ~~~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~-~~~~~~i~~~~--~ 96 (229)
++..+++|+|+|........+.+.|++.|+.+..........+.+....+|.||+--. .+... -.+++.+++.. .
T Consensus 2 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~--l~~~~g~~~~~~l~~~~~~~ 79 (132)
T 3lte_A 2 SLKQSKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFEPAIMTLDLS--MPKLDGLDVIRSLRQNKVAN 79 (132)
T ss_dssp -----CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTCCSEEEEESC--BTTBCHHHHHHHHHTTTCSS
T ss_pred CCCCCccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEecC--CCCCCHHHHHHHHHhcCccC
Confidence 3456789999997555667788999999998876553222223344457888777322 11112 23455666543 3
Q ss_pred CCcEEEEe
Q 027062 97 TVPLFGVC 104 (229)
Q Consensus 97 ~~PvlGIC 104 (229)
..||+-+.
T Consensus 80 ~~~ii~~~ 87 (132)
T 3lte_A 80 QPKILVVS 87 (132)
T ss_dssp CCEEEEEC
T ss_pred CCeEEEEe
Confidence 45555443
No 87
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=94.07 E-value=0.13 Score=36.14 Aligned_cols=82 Identities=12% Similarity=0.077 Sum_probs=50.7
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCC---C-CCCcchHHHHHHHhCCCCc
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG---A-PQDSGISLQTVLELGPTVP 99 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~---~-~~~~~~~~~~i~~~~~~~P 99 (229)
+++|+|+|........+.+.|+..|+++..........+.+....+|.+|+--.-. . ..+.-.+++.+++.....|
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 82 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLP 82 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCC
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCCC
Confidence 56899999765567778889999999887554321122233344678777743211 0 1122245666666666799
Q ss_pred EEEEeh
Q 027062 100 LFGVCM 105 (229)
Q Consensus 100 vlGIC~ 105 (229)
++-+.-
T Consensus 83 ii~ls~ 88 (140)
T 2qr3_A 83 VVLFTA 88 (140)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 988864
No 88
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=94.04 E-value=0.23 Score=35.68 Aligned_cols=83 Identities=13% Similarity=0.148 Sum_probs=52.2
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEE
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG 102 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlG 102 (229)
.+++|+|||........+.+.|+..|+++............+....+|.||+--.-.. .+.-.+++.+++.....|++-
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~ii~ 84 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTSVQLVISDMRMPE-MGGEVFLEQVAKSYPDIERVV 84 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTSCCSEEEEESSCSS-SCHHHHHHHHHHHCTTSEEEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEecCCCC-CCHHHHHHHHHHhCCCCcEEE
Confidence 4578999997655667788899999998875543211222334446888887422111 122245666766666799988
Q ss_pred Eehh
Q 027062 103 VCMG 106 (229)
Q Consensus 103 IC~G 106 (229)
+.-.
T Consensus 85 ls~~ 88 (154)
T 2rjn_A 85 ISGY 88 (154)
T ss_dssp EECG
T ss_pred EecC
Confidence 8654
No 89
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=94.01 E-value=0.16 Score=36.13 Aligned_cols=83 Identities=8% Similarity=0.063 Sum_probs=51.0
Q ss_pred CCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHH--hCCCCc
Q 027062 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE--LGPTVP 99 (229)
Q Consensus 22 ~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~--~~~~~P 99 (229)
..+++|+|||........+.+.|+..|+++............+....+|.||+--.-. ..+.-.+++.+++ .....|
T Consensus 6 ~~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~-~~~g~~~~~~l~~~~~~~~~p 84 (147)
T 2zay_A 6 GKWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTHPHLIITEANMP-KISGMDLFNSLKKNPQTASIP 84 (147)
T ss_dssp --CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHHCCSEEEEESCCS-SSCHHHHHHHHHTSTTTTTSC
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcCCCCEEEEcCCCC-CCCHHHHHHHHHcCcccCCCC
Confidence 3467899999866677888899999998877554321112233334689888742211 1122245666665 456789
Q ss_pred EEEEeh
Q 027062 100 LFGVCM 105 (229)
Q Consensus 100 vlGIC~ 105 (229)
|+-+.-
T Consensus 85 ii~ls~ 90 (147)
T 2zay_A 85 VIALSG 90 (147)
T ss_dssp EEEEES
T ss_pred EEEEeC
Confidence 988764
No 90
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=93.99 E-value=0.18 Score=35.47 Aligned_cols=84 Identities=13% Similarity=0.115 Sum_probs=50.1
Q ss_pred cCCCceEEEEECCCchhHHHHHHHHHcCCEEEE-EeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCc
Q 027062 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEV-YRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVP 99 (229)
Q Consensus 21 ~~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v-~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~P 99 (229)
+..+++|+|||........+.+.|+..|+++.. ........+.+....+|.+|+--.-..-.+.-.+++.+++. ...|
T Consensus 6 ~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~-~~~~ 84 (140)
T 3cg0_A 6 SDDLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAAG-CNLP 84 (140)
T ss_dssp --CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHHH-SCCC
T ss_pred CCCCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHhC-CCCC
Confidence 335678999997555667788889989998873 44321122233334789888742210001222355666665 6789
Q ss_pred EEEEeh
Q 027062 100 LFGVCM 105 (229)
Q Consensus 100 vlGIC~ 105 (229)
++-+.-
T Consensus 85 ii~ls~ 90 (140)
T 3cg0_A 85 IIFITS 90 (140)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 988764
No 91
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=93.84 E-value=0.21 Score=35.93 Aligned_cols=84 Identities=17% Similarity=0.232 Sum_probs=53.9
Q ss_pred ccCCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCC-CcchHHHHHHHhCCCC
Q 027062 20 SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELGPTV 98 (229)
Q Consensus 20 ~~~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~-~~~~~~~~i~~~~~~~ 98 (229)
.+..+++|+|||........+.+.|+..|+.+..........+.+....+|.||+--. .+. +.-.+++.+++.....
T Consensus 10 ~~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~~~ 87 (153)
T 3hv2_A 10 TVTRRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASREVDLVISAAH--LPQMDGPTLLARIHQQYPST 87 (153)
T ss_dssp CCCSCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHHHCTTS
T ss_pred hccCCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcCCCCEEEEeCC--CCcCcHHHHHHHHHhHCCCC
Confidence 4455678999997555667788999999988776543212223344457898887322 111 2224566677766778
Q ss_pred cEEEEeh
Q 027062 99 PLFGVCM 105 (229)
Q Consensus 99 PvlGIC~ 105 (229)
|++-+.-
T Consensus 88 ~ii~~s~ 94 (153)
T 3hv2_A 88 TRILLTG 94 (153)
T ss_dssp EEEEECC
T ss_pred eEEEEEC
Confidence 9887764
No 92
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=93.74 E-value=0.16 Score=35.08 Aligned_cols=80 Identities=13% Similarity=0.243 Sum_probs=50.6
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCc-chHHHHHHHh--CCCCc
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLEL--GPTVP 99 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~-~~~~~~i~~~--~~~~P 99 (229)
++++|+|+|........+.+.|++.|+++..........+.+....+|.||+--. .+... -.+++.+++. ....|
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~D~~--l~~~~g~~~~~~l~~~~~~~~~~ 79 (127)
T 3i42_A 2 SLQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRGYDAVFIDLN--LPDTSGLALVKQLRALPMEKTSK 79 (127)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSCCSEEEEESB--CSSSBHHHHHHHHHHSCCSSCCE
T ss_pred CcceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhcCCCEEEEeCC--CCCCCHHHHHHHHHhhhccCCCC
Confidence 3568999997555667888999999987776543212223344447888887421 12222 2456667765 56788
Q ss_pred EEEEe
Q 027062 100 LFGVC 104 (229)
Q Consensus 100 vlGIC 104 (229)
++-+.
T Consensus 80 ii~~s 84 (127)
T 3i42_A 80 FVAVS 84 (127)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88765
No 93
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=93.73 E-value=0.29 Score=34.56 Aligned_cols=81 Identities=14% Similarity=0.079 Sum_probs=51.4
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHh--ccCCCEEEECCCCCCCCCc-chHHHHHHHhCCCCc
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELK--RKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVP 99 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~--~~~~dgiii~GG~~~~~~~-~~~~~~i~~~~~~~P 99 (229)
.+++|+|||........+.+.|+..|+.+..........+.+. ...+|.||+--.- +... -.+++.+++.....|
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l--~~~~g~~~~~~l~~~~~~~~ 79 (143)
T 3jte_A 2 SLAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKM--PKLSGMDILREIKKITPHMA 79 (143)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCC--SSSCHHHHHHHHHHHCTTCE
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCC--CCCcHHHHHHHHHHhCCCCe
Confidence 3568999997555667888999999988775543212223333 3468888874321 2222 245667777667789
Q ss_pred EEEEeh
Q 027062 100 LFGVCM 105 (229)
Q Consensus 100 vlGIC~ 105 (229)
++-+.-
T Consensus 80 ii~ls~ 85 (143)
T 3jte_A 80 VIILTG 85 (143)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 887764
No 94
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=93.67 E-value=0.19 Score=36.21 Aligned_cols=82 Identities=15% Similarity=0.193 Sum_probs=49.4
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEE
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG 102 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlG 102 (229)
.+++|+|||........+.+.|+..|+++............+....+|.+|+--.... .+...+++.+++.....|++-
T Consensus 2 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dliild~~l~~-~~g~~~~~~l~~~~~~~pii~ 80 (155)
T 1qkk_A 2 AAPSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRMPG-MDGLALFRKILALDPDLPMIL 80 (155)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCTTCCSEEEEESCCSS-SCHHHHHHHHHHHCTTSCEEE
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHhCCCCEEEEeCCCCC-CCHHHHHHHHHhhCCCCCEEE
Confidence 4578999997555667788999999998775542211111122236888877432111 122245666766666799988
Q ss_pred Eeh
Q 027062 103 VCM 105 (229)
Q Consensus 103 IC~ 105 (229)
+.-
T Consensus 81 ls~ 83 (155)
T 1qkk_A 81 VTG 83 (155)
T ss_dssp EEC
T ss_pred EEC
Confidence 763
No 95
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=93.52 E-value=0.14 Score=36.34 Aligned_cols=81 Identities=9% Similarity=0.120 Sum_probs=49.7
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCc--cCHHHHhccCCCEEEECCCCCCCCCc-chHHHHHHH--hCCC
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDE--LTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLE--LGPT 97 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~--~~~~~l~~~~~dgiii~GG~~~~~~~-~~~~~~i~~--~~~~ 97 (229)
.+++|+|||........+.+.|+..|....+..... ...+.+....+|.||+--. .+... -.+++.+++ ...+
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~--l~~~~g~~~~~~lr~~~~~~~ 81 (144)
T 3kht_A 4 RSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIG--LPIANGFEVMSAVRKPGANQH 81 (144)
T ss_dssp -CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTT--CGGGCHHHHHHHHHSSSTTTT
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCC--CCCCCHHHHHHHHHhcccccC
Confidence 467899999755566778899999998854444321 1122344446888877321 12212 235566666 4467
Q ss_pred CcEEEEeh
Q 027062 98 VPLFGVCM 105 (229)
Q Consensus 98 ~PvlGIC~ 105 (229)
.|++-+.-
T Consensus 82 ~pii~~s~ 89 (144)
T 3kht_A 82 TPIVILTD 89 (144)
T ss_dssp CCEEEEET
T ss_pred CCEEEEeC
Confidence 89998874
No 96
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=93.44 E-value=0.18 Score=35.35 Aligned_cols=82 Identities=7% Similarity=-0.063 Sum_probs=51.2
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEE
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG 102 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlG 102 (229)
.+++|+|||........+.+.|+..|..+..........+.+....+|.||+--.-. -.+.-.+++.+++.....|++-
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~-~~~g~~~~~~l~~~~~~~~ii~ 84 (137)
T 3hdg_A 6 VALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHAPDVIITDIRMP-KLGGLEMLDRIKAGGAKPYVIV 84 (137)
T ss_dssp -CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHHCCSEEEECSSCS-SSCHHHHHHHHHHTTCCCEEEE
T ss_pred cccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhccCCCEEEEeCCCC-CCCHHHHHHHHHhcCCCCcEEE
Confidence 457899999755566778888988888777665322222334444789888743211 1122245666776667788887
Q ss_pred Eeh
Q 027062 103 VCM 105 (229)
Q Consensus 103 IC~ 105 (229)
+.-
T Consensus 85 ~s~ 87 (137)
T 3hdg_A 85 ISA 87 (137)
T ss_dssp CCC
T ss_pred Eec
Confidence 764
No 97
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=93.40 E-value=0.15 Score=34.92 Aligned_cols=79 Identities=15% Similarity=0.256 Sum_probs=48.1
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHh--CCCCcEEE
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL--GPTVPLFG 102 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~--~~~~PvlG 102 (229)
++|+|+|........+.+.|+..|+++..........+.+....+|.+|+--.-....+.-.+.+.+++. ....|++-
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~ii~ 85 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPIVI 85 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCEEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCEEE
Confidence 5899999755566778889999999887554321122233334688887732110001122345666665 46789887
Q ss_pred E
Q 027062 103 V 103 (229)
Q Consensus 103 I 103 (229)
+
T Consensus 86 ~ 86 (127)
T 2gkg_A 86 I 86 (127)
T ss_dssp E
T ss_pred E
Confidence 7
No 98
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=93.38 E-value=0.12 Score=36.59 Aligned_cols=82 Identities=11% Similarity=0.088 Sum_probs=50.6
Q ss_pred CCCceEEEEECCCchhHHHHHHHHH-cCCEEEEEeCCccCHHHHhc-cCCCEEEECCCCCCC-CCc-chHHHHHHH--hC
Q 027062 22 NNKNPIIVIDNYDSFTYNLCQYMGE-LGYHFEVYRNDELTVEELKR-KNPRGVLISPGPGAP-QDS-GISLQTVLE--LG 95 (229)
Q Consensus 22 ~~~~~ilvid~~~~~~~~~~~~l~~-~g~~~~v~~~~~~~~~~l~~-~~~dgiii~GG~~~~-~~~-~~~~~~i~~--~~ 95 (229)
..+++|+|||........+...|+. .|+++..........+.+.. ..+|.||+-= ..+ ... -.+++.+++ ..
T Consensus 2 ~~~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~--~l~~~~~g~~~~~~l~~~~~~ 79 (140)
T 3lua_A 2 SLDGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDSITLIIMDI--AFPVEKEGLEVLSAIRNNSRT 79 (140)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCCCSEEEECS--CSSSHHHHHHHHHHHHHSGGG
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcCCCCcEEEEeC--CCCCCCcHHHHHHHHHhCccc
Confidence 3567899999755566778889998 89988755432111222334 4688887732 111 111 234566666 55
Q ss_pred CCCcEEEEeh
Q 027062 96 PTVPLFGVCM 105 (229)
Q Consensus 96 ~~~PvlGIC~ 105 (229)
...|++-+.-
T Consensus 80 ~~~~ii~ls~ 89 (140)
T 3lua_A 80 ANTPVIIATK 89 (140)
T ss_dssp TTCCEEEEES
T ss_pred CCCCEEEEeC
Confidence 7789988763
No 99
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=93.20 E-value=0.28 Score=35.22 Aligned_cols=83 Identities=8% Similarity=0.058 Sum_probs=49.9
Q ss_pred CCCceEEEEECCCchhHHHHHHHHH-cCCEEE-EEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCc
Q 027062 22 NNKNPIIVIDNYDSFTYNLCQYMGE-LGYHFE-VYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVP 99 (229)
Q Consensus 22 ~~~~~ilvid~~~~~~~~~~~~l~~-~g~~~~-v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~P 99 (229)
..+++|+|+|........+.+.|+. .|+.+. .........+.+....+|.||+--.-. ..+...+++.+++.....|
T Consensus 3 ~~~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~~~dlii~D~~l~-~~~g~~~~~~l~~~~~~~~ 81 (153)
T 3cz5_A 3 LSTARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRETTPDIVVMDLTLP-GPGGIEATRHIRQWDGAAR 81 (153)
T ss_dssp -CCEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTTCCSEEEECSCCS-SSCHHHHHHHHHHHCTTCC
T ss_pred CcccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhcCCCCEEEEecCCC-CCCHHHHHHHHHHhCCCCe
Confidence 3467899999755566778888887 688776 333211112234444688888742211 1122345667776666789
Q ss_pred EEEEeh
Q 027062 100 LFGVCM 105 (229)
Q Consensus 100 vlGIC~ 105 (229)
++-+.-
T Consensus 82 ii~ls~ 87 (153)
T 3cz5_A 82 ILIFTM 87 (153)
T ss_dssp EEEEES
T ss_pred EEEEEC
Confidence 887763
No 100
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=93.19 E-value=0.44 Score=33.06 Aligned_cols=81 Identities=14% Similarity=0.043 Sum_probs=51.4
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEE-EEeCCccCHHHHhccCCCEEEECCCCCCCCCc-chHHHHHHHhCCCCcEE
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFE-VYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLF 101 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~-v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~-~~~~~~i~~~~~~~Pvl 101 (229)
+++|+|+|........+.+.|++.|+.+. .........+.+....+|.+|+--. .+... -.+++.+++.....|++
T Consensus 1 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~--l~~~~g~~~~~~l~~~~~~~~ii 78 (134)
T 3f6c_A 1 SLNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVD--IPGVNGIQVLETLRKRQYSGIII 78 (134)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHCCSEEEEETT--CSSSCHHHHHHHHHHTTCCSEEE
T ss_pred CeEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhcCCCEEEEecC--CCCCChHHHHHHHHhcCCCCeEE
Confidence 36899999755567788899999997775 3333222233444457898887422 12222 34567777766778988
Q ss_pred EEehh
Q 027062 102 GVCMG 106 (229)
Q Consensus 102 GIC~G 106 (229)
-++--
T Consensus 79 ~~s~~ 83 (134)
T 3f6c_A 79 IVSAK 83 (134)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 77643
No 101
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=93.18 E-value=0.18 Score=41.19 Aligned_cols=77 Identities=17% Similarity=0.196 Sum_probs=47.6
Q ss_pred CceEEEEECCCc-----hhHHHHHHHHHcCCEEEEEeCC----------ccCHHHHhccCCCEEEECCCCCCCCCcchHH
Q 027062 24 KNPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRND----------ELTVEELKRKNPRGVLISPGPGAPQDSGISL 88 (229)
Q Consensus 24 ~~~ilvid~~~~-----~~~~~~~~l~~~g~~~~v~~~~----------~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~ 88 (229)
+++|+||-+... ....+.++|++.|+++.+.... ....+.+. .++|.||..||.|+ ++
T Consensus 5 mkki~ii~np~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~D~vi~~GGDGT------~l 77 (292)
T 2an1_A 5 FKCIGIVGHPRHPTALTTHEMLYRWLCDQGYEVIVEQQIAHELQLKNVPTGTLAEIG-QQADLAVVVGGDGN------ML 77 (292)
T ss_dssp CCEEEEECC-------CHHHHHHHHHHHTTCEEEEEHHHHHHTTCSSCCEECHHHHH-HHCSEEEECSCHHH------HH
T ss_pred CcEEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcccccccccchhhcc-cCCCEEEEEcCcHH------HH
Confidence 357888866422 2456888999999998765311 01122222 25799999999764 44
Q ss_pred HHHHHh-CCCCcEEEEehhH
Q 027062 89 QTVLEL-GPTVPLFGVCMGL 107 (229)
Q Consensus 89 ~~i~~~-~~~~PvlGIC~G~ 107 (229)
..++.+ ..++|++||=.|.
T Consensus 78 ~a~~~~~~~~~P~lGI~~Gt 97 (292)
T 2an1_A 78 GAARTLARYDINVIGINRGN 97 (292)
T ss_dssp HHHHHHTTSSCEEEEBCSSS
T ss_pred HHHHHhhcCCCCEEEEECCC
Confidence 555443 3468999997664
No 102
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=93.15 E-value=0.047 Score=38.65 Aligned_cols=83 Identities=17% Similarity=0.233 Sum_probs=47.3
Q ss_pred cCCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCC--Cc-chHHHHHHHhCCC
Q 027062 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ--DS-GISLQTVLELGPT 97 (229)
Q Consensus 21 ~~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~--~~-~~~~~~i~~~~~~ 97 (229)
+..+++|+|+|........+.+.|+..|+++..........+.+....+|.||+-=. .+. .. -.+++.+++....
T Consensus 3 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~--l~~~~~~g~~~~~~l~~~~~~ 80 (136)
T 3kto_A 3 LNHHPIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQISDDAIGMIIEAH--LEDKKDSGIELLETLVKRGFH 80 (136)
T ss_dssp ----CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCCTTEEEEEEETT--GGGBTTHHHHHHHHHHHTTCC
T ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccCCCEEEEeCc--CCCCCccHHHHHHHHHhCCCC
Confidence 455679999997555667788889999998875542100011122235777776311 111 12 2345666666677
Q ss_pred CcEEEEeh
Q 027062 98 VPLFGVCM 105 (229)
Q Consensus 98 ~PvlGIC~ 105 (229)
.|++-+.-
T Consensus 81 ~~ii~~s~ 88 (136)
T 3kto_A 81 LPTIVMAS 88 (136)
T ss_dssp CCEEEEES
T ss_pred CCEEEEEc
Confidence 89887763
No 103
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=93.11 E-value=3 Score=33.93 Aligned_cols=168 Identities=10% Similarity=0.076 Sum_probs=87.1
Q ss_pred CCceEEEEECCCc--h---hHHHHHHHHHcC-CEEEEEeCC-------ccCHHHHhccCCCEEEECCCCCCCCCcchHHH
Q 027062 23 NKNPIIVIDNYDS--F---TYNLCQYMGELG-YHFEVYRND-------ELTVEELKRKNPRGVLISPGPGAPQDSGISLQ 89 (229)
Q Consensus 23 ~~~~ilvid~~~~--~---~~~~~~~l~~~g-~~~~v~~~~-------~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~ 89 (229)
++.|||||.-... + ...+.+.|++.| ++|.+.... ... +.|. +||.||+.- .+.... ....+
T Consensus 3 ~~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~-~~L~--~~D~vV~~~-~~~~l~-~~~~~ 77 (281)
T 4e5v_A 3 KPIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFV-LDFS--PYQLVVLDY-NGDSWP-EETNR 77 (281)
T ss_dssp CCEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCC-CCCT--TCSEEEECC-CSSCCC-HHHHH
T ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHh-hhhh--cCCEEEEeC-CCCcCC-HHHHH
Confidence 4678999954222 2 245788888888 899887631 111 2233 689999743 222222 22333
Q ss_pred HHH-HhCCCCcEEEEehhHH------HHHHHhC-Ceee-ec-------------------C-CccccCccceeEec-cCC
Q 027062 90 TVL-ELGPTVPLFGVCMGLQ------CIGEAFG-GKIV-RS-------------------P-LGVMHGKSSLVYYD-EKG 139 (229)
Q Consensus 90 ~i~-~~~~~~PvlGIC~G~Q------lla~alG-g~v~-~~-------------------~-~~~~~g~~~~~~~~-~~~ 139 (229)
.+. ...++.+++|+..+.- --...+| |.-. +. + ....|+......+. ...
T Consensus 78 ~l~~yV~~Ggglv~~H~a~~~~~~w~~y~~liG~g~f~~r~~~~gp~~~~~~g~~v~~~~~g~~~~Hp~~~~~~v~v~~~ 157 (281)
T 4e5v_A 78 RFLEYVQNGGGVVIYHAADNAFSKWPEFNRICALGGWEGRNENSGPYVYWKDGKLVKDSSAGPGGSHGRQHEYVLNGRDK 157 (281)
T ss_dssp HHHHHHHTTCEEEEEGGGGGSCTTCHHHHHHHSCBCCTTCSGGGCCEEEEETTEEEEECCSCCSCBCCSCEEEEEEESCS
T ss_pred HHHHHHHcCCCEEEEecccccCCCCHHHHHheecccccccccccccceeecccccccccccccccCCCCCceEEEEEcCC
Confidence 333 3456899999987542 2335567 5320 00 0 00123332222222 235
Q ss_pred CCcccccCCCceeee--eeeceeeeccCCCCCCeEEEEEcCC-------C--ceEEEEe--CCCCcEEEEecc
Q 027062 140 EDGLLAGLSNPFTAG--RYHSLVIEKESFPSDALEVTAWTED-------G--LIMAARH--KKYKHLQGVQFH 199 (229)
Q Consensus 140 ~~~l~~~l~~~~~~~--~~H~~~v~~~~l~~~~~~~la~~~~-------~--~i~a~~~--~~~~~i~g~QfH 199 (229)
.+|+.++++..+... .+...... +.++.++|++... + ...+... ..++-+|....|
T Consensus 158 ~HPit~Gl~~~~~~~~dE~Y~~~~~----p~~~~~VL~t~~~~~~~~~~g~~~Pv~W~~~~g~GRvFyt~lGH 226 (281)
T 4e5v_A 158 VHPVVKGLPLKWRHAKDELYDRMRG----PGNIRDILYTAYSDKETNGSGREEPLVFTVDYGNARIFHTMLGH 226 (281)
T ss_dssp SSTTTTTSCSEEEEEEECCCBSCBS----CCCEEEEEEEEECCGGGTCCSSEEEEEEEECSTTCEEEEECCCC
T ss_pred CCchhhCCCCcccccccCCcccccC----CCCCCEEEEEEeccCcCCCCCCcceEEEEEEeCCeeEEEECCCC
Confidence 799999998754421 22222111 3356788887543 2 2233332 233446777778
No 104
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=92.79 E-value=0.4 Score=33.26 Aligned_cols=80 Identities=8% Similarity=0.023 Sum_probs=47.2
Q ss_pred CCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCc-chHHHHHHHh--CCCC
Q 027062 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLEL--GPTV 98 (229)
Q Consensus 22 ~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~-~~~~~~i~~~--~~~~ 98 (229)
+.+++|+|+|........+...|+ .|+++..........+.+....+|.||+--. .+... -.+++.+++. ..+.
T Consensus 2 ~~~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~--l~~~~g~~~~~~l~~~~~~~~~ 78 (133)
T 3nhm_A 2 SLKPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALAHPPDVLISDVN--MDGMDGYALCGHFRSEPTLKHI 78 (133)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHSCCSEEEECSS--CSSSCHHHHHHHHHHSTTTTTC
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhCCccCCC
Confidence 456789999975555666777777 8888776553222223344457888887422 12222 2456666664 3478
Q ss_pred cEEEEe
Q 027062 99 PLFGVC 104 (229)
Q Consensus 99 PvlGIC 104 (229)
|++-+.
T Consensus 79 pii~~s 84 (133)
T 3nhm_A 79 PVIFVS 84 (133)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 888776
No 105
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=92.67 E-value=0.23 Score=35.06 Aligned_cols=83 Identities=11% Similarity=0.185 Sum_probs=48.6
Q ss_pred cCCCceEEEEECCCchhHHHHHHHHHcCC--EEEEEeCCccCHHHHhc------cCCCEEEECCCCCCCCCc-chHHHHH
Q 027062 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGY--HFEVYRNDELTVEELKR------KNPRGVLISPGPGAPQDS-GISLQTV 91 (229)
Q Consensus 21 ~~~~~~ilvid~~~~~~~~~~~~l~~~g~--~~~v~~~~~~~~~~l~~------~~~dgiii~GG~~~~~~~-~~~~~~i 91 (229)
|..+++|+|+|........+.+.|+..|. .+..........+.+.. ..+|.||+--. .+... -.+++.+
T Consensus 4 m~~~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~--l~~~~g~~~~~~l 81 (143)
T 2qvg_A 4 AADKVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDIN--IPKMNGIEFLKEL 81 (143)
T ss_dssp ---CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETT--CTTSCHHHHHHHH
T ss_pred ccCCCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecC--CCCCCHHHHHHHH
Confidence 44567899999765567788899999888 66655432122233433 46888887422 11122 2345555
Q ss_pred HHhC--CCCcEEEEeh
Q 027062 92 LELG--PTVPLFGVCM 105 (229)
Q Consensus 92 ~~~~--~~~PvlGIC~ 105 (229)
++.. ...|++-+.-
T Consensus 82 ~~~~~~~~~~ii~ls~ 97 (143)
T 2qvg_A 82 RDDSSFTDIEVFVLTA 97 (143)
T ss_dssp TTSGGGTTCEEEEEES
T ss_pred HcCccccCCcEEEEeC
Confidence 5433 5689888764
No 106
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=92.61 E-value=0.42 Score=31.95 Aligned_cols=79 Identities=19% Similarity=0.293 Sum_probs=48.1
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhC--CCCcEEE
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELG--PTVPLFG 102 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~--~~~PvlG 102 (229)
++|+|+|........+.+.|+..|+++..........+.+....+|.+|+--... ..+...+++.+++.. ...|++-
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~~dlii~d~~~~-~~~~~~~~~~l~~~~~~~~~~ii~ 80 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQPIVILMAWPPP-DQSCLLLLQHLREHQADPHPPLVL 80 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEECSTT-CCTHHHHHHHHHHTCCCSSCCCEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhcCCCEEEEecCCC-CCCHHHHHHHHHhccccCCCCEEE
Confidence 5799999755566788899999999887654321112233334688888743211 112223456666553 5688876
Q ss_pred Ee
Q 027062 103 VC 104 (229)
Q Consensus 103 IC 104 (229)
+.
T Consensus 81 ~~ 82 (119)
T 2j48_A 81 FL 82 (119)
T ss_dssp EE
T ss_pred Ee
Confidence 65
No 107
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=92.37 E-value=0.58 Score=37.12 Aligned_cols=83 Identities=25% Similarity=0.342 Sum_probs=52.7
Q ss_pred cCCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCC-CcchHHHHHHHhCCCCc
Q 027062 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELGPTVP 99 (229)
Q Consensus 21 ~~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~-~~~~~~~~i~~~~~~~P 99 (229)
....++|+|+|........+.+.|+..|+++..........+.+....+|.||+-= ..+. +.-...+.+++.....|
T Consensus 126 ~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~~dlvl~D~--~mp~~~G~~l~~~ir~~~~~~p 203 (254)
T 2ayx_A 126 DNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDV--NMPNMDGYRLTQRIRQLGLTLP 203 (254)
T ss_dssp CCCCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHHSCCSEEEEEE--SSCSSCCHHHHHHHHHHHCCSC
T ss_pred CCCCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCCCCEEEEcC--CCCCCCHHHHHHHHHhcCCCCc
Confidence 34567899999755566778888999999887665432222334444688877621 1122 22245666766556799
Q ss_pred EEEEeh
Q 027062 100 LFGVCM 105 (229)
Q Consensus 100 vlGIC~ 105 (229)
|+.+.-
T Consensus 204 iI~lt~ 209 (254)
T 2ayx_A 204 VIGVTA 209 (254)
T ss_dssp EEEEES
T ss_pred EEEEEC
Confidence 998864
No 108
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=92.35 E-value=0.38 Score=33.74 Aligned_cols=83 Identities=11% Similarity=0.019 Sum_probs=48.2
Q ss_pred ccCCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhc-cCCCEEEECCCCCCCCCc-chHHHHHHHhCCC
Q 027062 20 SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDS-GISLQTVLELGPT 97 (229)
Q Consensus 20 ~~~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~-~~~dgiii~GG~~~~~~~-~~~~~~i~~~~~~ 97 (229)
....+++|+|+|........+.+.|+..|+++..........+.+.. ..+|.+|+--. .+... -.+++.+++....
T Consensus 11 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~dlvilD~~--l~~~~g~~~~~~l~~~~~~ 88 (138)
T 2b4a_A 11 HHMQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLSTCDLLIVSDQ--LVDLSIFSLLDIVKEQTKQ 88 (138)
T ss_dssp ---CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGGSCSEEEEETT--CTTSCHHHHHHHHTTSSSC
T ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCCCCCEEEEeCC--CCCCCHHHHHHHHHhhCCC
Confidence 45567789999975556677888899999987655432111223344 46888877321 11112 2344555554456
Q ss_pred CcEEEEe
Q 027062 98 VPLFGVC 104 (229)
Q Consensus 98 ~PvlGIC 104 (229)
.|++-+.
T Consensus 89 ~~ii~ls 95 (138)
T 2b4a_A 89 PSVLILT 95 (138)
T ss_dssp CEEEEEE
T ss_pred CCEEEEE
Confidence 7887765
No 109
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=92.27 E-value=0.067 Score=38.17 Aligned_cols=79 Identities=10% Similarity=0.119 Sum_probs=47.4
Q ss_pred ccCCCceEEEEECCCchhHHHHHHHHHcCCEEE-EEeCCccCHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCC
Q 027062 20 SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFE-VYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPT 97 (229)
Q Consensus 20 ~~~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~-v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~-~~~~~i~~~~~~ 97 (229)
+...++||||||-.......+.+.|++.|+++. .........+-+....||.+++= -..|...+ .+.+.+++. +
T Consensus 4 m~~r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~~~~DlvllD--i~mP~~~G~el~~~lr~~--~ 79 (123)
T 2lpm_A 4 MTERRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARKGQFDIAIID--VNLDGEPSYPVADILAER--N 79 (123)
T ss_dssp CCCCCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHHCCSSEEEEC--SSSSSCCSHHHHHHHHHT--C
T ss_pred CCCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCCCEEEEe--cCCCCCCHHHHHHHHHcC--C
Confidence 455678999999766677889999999999864 22221112233444578988761 11222233 345555553 5
Q ss_pred CcEEE
Q 027062 98 VPLFG 102 (229)
Q Consensus 98 ~PvlG 102 (229)
+||+-
T Consensus 80 ipvI~ 84 (123)
T 2lpm_A 80 VPFIF 84 (123)
T ss_dssp CSSCC
T ss_pred CCEEE
Confidence 77654
No 110
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=92.06 E-value=0.14 Score=37.04 Aligned_cols=83 Identities=14% Similarity=0.203 Sum_probs=50.9
Q ss_pred ccCCCceEEEEECCCchhHHHHHHHHHcCCEEE-EEeCCccCHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHh--C
Q 027062 20 SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFE-VYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--G 95 (229)
Q Consensus 20 ~~~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~-v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~-~~~~~i~~~--~ 95 (229)
.|++.+||||||-.......+.+.|+..|++++ .........+-+....||.|++= -..|.-++ .+.+.+++. .
T Consensus 8 ~m~k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~~~DlillD--~~MP~mdG~el~~~ir~~~~~ 85 (134)
T 3to5_A 8 ILNKNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKGDFDFVVTD--WNMPGMQGIDLLKNIRADEEL 85 (134)
T ss_dssp -CCTTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHCCSEEEEE--SCCSSSCHHHHHHHHHHSTTT
T ss_pred HhCCCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHhCCCCEEEEc--CCCCCCCHHHHHHHHHhCCCC
Confidence 466778999999654566778889999998743 33321111223334478987762 22343344 456777753 3
Q ss_pred CCCcEEEEe
Q 027062 96 PTVPLFGVC 104 (229)
Q Consensus 96 ~~~PvlGIC 104 (229)
.++||+-+-
T Consensus 86 ~~ipvI~lT 94 (134)
T 3to5_A 86 KHLPVLMIT 94 (134)
T ss_dssp TTCCEEEEE
T ss_pred CCCeEEEEE
Confidence 678988765
No 111
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=91.92 E-value=0.51 Score=33.69 Aligned_cols=83 Identities=8% Similarity=0.093 Sum_probs=48.4
Q ss_pred cCCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccC-CCEEEECCCCCCCCCcchHHHHHHHhCCCCc
Q 027062 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKN-PRGVLISPGPGAPQDSGISLQTVLELGPTVP 99 (229)
Q Consensus 21 ~~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~-~dgiii~GG~~~~~~~~~~~~~i~~~~~~~P 99 (229)
|+.+++|+|||........+.+.|+. |+++..........+.+...+ ||.||+--.-. ..+.-.+++.+++.....|
T Consensus 1 M~~~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~-~~~g~~~~~~l~~~~~~~~ 78 (151)
T 3kcn_A 1 MSLNERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKSDPFSVIMVDMRMP-GMEGTEVIQKARLISPNSV 78 (151)
T ss_dssp --CCCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHHSCCCSEEEEESCCS-SSCHHHHHHHHHHHCSSCE
T ss_pred CCCCCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHcCCCCCEEEEeCCCC-CCcHHHHHHHHHhcCCCcE
Confidence 34567899999755556677787865 888775543211222333334 58887742211 1122345667777667789
Q ss_pred EEEEeh
Q 027062 100 LFGVCM 105 (229)
Q Consensus 100 vlGIC~ 105 (229)
++-+.-
T Consensus 79 ii~~s~ 84 (151)
T 3kcn_A 79 YLMLTG 84 (151)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 887764
No 112
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=91.85 E-value=0.15 Score=42.22 Aligned_cols=77 Identities=16% Similarity=0.293 Sum_probs=44.1
Q ss_pred CceEEEEECCCc-----hhHHHHHHHHHcCCEEEEEeCCccC-----------------HHH-----HhccCCCEEEECC
Q 027062 24 KNPIIVIDNYDS-----FTYNLCQYMGELGYHFEVYRNDELT-----------------VEE-----LKRKNPRGVLISP 76 (229)
Q Consensus 24 ~~~ilvid~~~~-----~~~~~~~~l~~~g~~~~v~~~~~~~-----------------~~~-----l~~~~~dgiii~G 76 (229)
+++|+||-+..+ ....+.++|++.|+++.+....... ... ....++|.+|..|
T Consensus 4 m~ki~iI~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~~G 83 (307)
T 1u0t_A 4 HRSVLLVVHTGRDEATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLVLG 83 (307)
T ss_dssp -CEEEEEESSSGGGGSHHHHHHHHHHHTTTCEEEEEC-----------------------------------CCCEEEEE
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhhcccccccccccccccccccccccccccCCCEEEEEe
Confidence 457888877533 2356888999999998765422100 110 1112578999999
Q ss_pred CCCCCCCcchHHHHHHHh-CCCCcEEEEehh
Q 027062 77 GPGAPQDSGISLQTVLEL-GPTVPLFGVCMG 106 (229)
Q Consensus 77 G~~~~~~~~~~~~~i~~~-~~~~PvlGIC~G 106 (229)
|.|+ ++..++.+ ..++|++||=.|
T Consensus 84 GDGT------~l~a~~~~~~~~~pvlgi~~G 108 (307)
T 1u0t_A 84 GDGT------FLRAAELARNASIPVLGVNLG 108 (307)
T ss_dssp CHHH------HHHHHHHHHHHTCCEEEEECS
T ss_pred CCHH------HHHHHHHhccCCCCEEEEeCC
Confidence 8764 33433332 235899999776
No 113
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=91.80 E-value=0.54 Score=33.53 Aligned_cols=83 Identities=10% Similarity=0.096 Sum_probs=48.5
Q ss_pred cCCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCc--cCHHHHhccCCCEEEECCCCCCCC-CcchHHHHHHHhCCC
Q 027062 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDE--LTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELGPT 97 (229)
Q Consensus 21 ~~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~--~~~~~l~~~~~dgiii~GG~~~~~-~~~~~~~~i~~~~~~ 97 (229)
...+++|+|||....+...+.+.|+..|....+..... ...+.+....+|.||+--. .+. +.-.+++.+++....
T Consensus 17 ~~~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlii~D~~--l~~~~g~~~~~~l~~~~~~ 94 (150)
T 4e7p_A 17 RGSHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVE--MPVKTGLEVLEWIRSEKLE 94 (150)
T ss_dssp ---CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSCCSEEEECSS--CSSSCHHHHHHHHHHTTCS
T ss_pred CCCccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccCCCEEEEeCC--CCCCcHHHHHHHHHHhCCC
Confidence 44567899999755566778888988874333333221 1122344447888877422 122 223456677776677
Q ss_pred CcEEEEeh
Q 027062 98 VPLFGVCM 105 (229)
Q Consensus 98 ~PvlGIC~ 105 (229)
.|++-+.-
T Consensus 95 ~~ii~ls~ 102 (150)
T 4e7p_A 95 TKVVVVTT 102 (150)
T ss_dssp CEEEEEES
T ss_pred CeEEEEeC
Confidence 89888774
No 114
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=91.74 E-value=0.48 Score=33.36 Aligned_cols=78 Identities=13% Similarity=0.195 Sum_probs=47.6
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCCCcEEEE
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV 103 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~-~~~~~i~~~~~~~PvlGI 103 (229)
.+|+|+|........+.+.|+..|+++..........+.+....+|.+|+-=. .+...+ .+.+.+++.....|++-+
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvllD~~--l~~~~g~~l~~~l~~~~~~~~ii~l 82 (137)
T 3cfy_A 5 PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLK--LPDMSGEDVLDWINQNDIPTSVIIA 82 (137)
T ss_dssp CEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHHCCSEEEECSB--CSSSBHHHHHHHHHHTTCCCEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHhcCCCEEEEecC--CCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 47999998666777788888888998764432211122333346888776321 122222 345666666567888776
Q ss_pred e
Q 027062 104 C 104 (229)
Q Consensus 104 C 104 (229)
.
T Consensus 83 s 83 (137)
T 3cfy_A 83 T 83 (137)
T ss_dssp E
T ss_pred E
Confidence 5
No 115
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=91.52 E-value=0.74 Score=31.90 Aligned_cols=81 Identities=10% Similarity=0.132 Sum_probs=49.3
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCC--EEEEEeCCccCHHHHhc-------cCCCEEEECCCCCCCCCcchHHHHHHHh
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGY--HFEVYRNDELTVEELKR-------KNPRGVLISPGPGAPQDSGISLQTVLEL 94 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~--~~~v~~~~~~~~~~l~~-------~~~dgiii~GG~~~~~~~~~~~~~i~~~ 94 (229)
+++|+|+|........+.+.|+..|. .+..........+.+.. ..+|.+|+--.-. ..+.-.+++.+++.
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~-~~~g~~~~~~l~~~ 80 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLP-KKDGREVLAEIKSD 80 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCS-SSCHHHHHHHHHHS
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCC-cccHHHHHHHHHcC
Confidence 57899999755567788899999998 55554432112233333 4688888743211 11222456666664
Q ss_pred C--CCCcEEEEeh
Q 027062 95 G--PTVPLFGVCM 105 (229)
Q Consensus 95 ~--~~~PvlGIC~ 105 (229)
. ...|++-+.-
T Consensus 81 ~~~~~~pii~ls~ 93 (140)
T 1k68_A 81 PTLKRIPVVVLST 93 (140)
T ss_dssp TTGGGSCEEEEES
T ss_pred cccccccEEEEec
Confidence 4 5689888764
No 116
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=91.45 E-value=0.31 Score=34.56 Aligned_cols=84 Identities=14% Similarity=0.125 Sum_probs=51.8
Q ss_pred ccCCCceEEEEECCCchhHHHHHHHHHcC-CEEEEEeCCccCHHHHhc--cCCCEEEECCCCCCCCCc-chHHHHHHHhC
Q 027062 20 SKNNKNPIIVIDNYDSFTYNLCQYMGELG-YHFEVYRNDELTVEELKR--KNPRGVLISPGPGAPQDS-GISLQTVLELG 95 (229)
Q Consensus 20 ~~~~~~~ilvid~~~~~~~~~~~~l~~~g-~~~~v~~~~~~~~~~l~~--~~~dgiii~GG~~~~~~~-~~~~~~i~~~~ 95 (229)
....+.+|+|||........+.+.|+..| +++............+.. ..+|.||+--. .+... -.+++.+++..
T Consensus 16 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~ 93 (146)
T 4dad_A 16 YFQGMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGA--ALDTAELAAIEKLSRLH 93 (146)
T ss_dssp CCGGGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECT--TCCHHHHHHHHHHHHHC
T ss_pred CcCCCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCC--CCCccHHHHHHHHHHhC
Confidence 34456789999975556677889999998 888776533111122222 46888877321 11111 23456666666
Q ss_pred CCCcEEEEeh
Q 027062 96 PTVPLFGVCM 105 (229)
Q Consensus 96 ~~~PvlGIC~ 105 (229)
...|++-+.-
T Consensus 94 ~~~~ii~lt~ 103 (146)
T 4dad_A 94 PGLTCLLVTT 103 (146)
T ss_dssp TTCEEEEEES
T ss_pred CCCcEEEEeC
Confidence 6789887764
No 117
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=91.16 E-value=0.85 Score=31.24 Aligned_cols=80 Identities=11% Similarity=0.107 Sum_probs=47.3
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCc-chHHHHHHHhCCCCcEEE
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFG 102 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~-~~~~~~i~~~~~~~PvlG 102 (229)
+.+|+|+|........+...++..|+.+..........+.+....+|.+++-= ..+... -.+++.+++.....|++-
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~D~--~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNGVLVTDL--RMPDMSGVELLRNLGDLKINIPSIV 80 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGGCCSEEEEEEC--CSTTSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCCEEEEEC--CCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 46899999755566778888988898876543211111223333577666521 112222 235666666666788887
Q ss_pred Eeh
Q 027062 103 VCM 105 (229)
Q Consensus 103 IC~ 105 (229)
+.-
T Consensus 81 ~s~ 83 (126)
T 1dbw_A 81 ITG 83 (126)
T ss_dssp EEC
T ss_pred EEC
Confidence 653
No 118
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=91.05 E-value=0.89 Score=31.54 Aligned_cols=79 Identities=16% Similarity=0.175 Sum_probs=48.2
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCCCcEEE
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG 102 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~-~~~~~i~~~~~~~PvlG 102 (229)
+++|+|+|........+...|+..|+++..........+.+....+|.+|+-= ..+...+ .+++.+++.....|++-
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~--~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (132)
T 3crn_A 3 LKRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEFFNLALFXI--KLPDMEGTELLEKAHKLRPGMKKIM 80 (132)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECS--BCSSSBHHHHHHHHHHHCTTSEEEE
T ss_pred ccEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcCCCCEEEEec--CCCCCchHHHHHHHHhhCCCCcEEE
Confidence 46899999755566778888988999877544221112233334688777632 1122222 34566666566788877
Q ss_pred Ee
Q 027062 103 VC 104 (229)
Q Consensus 103 IC 104 (229)
+.
T Consensus 81 ~s 82 (132)
T 3crn_A 81 VT 82 (132)
T ss_dssp EE
T ss_pred Ee
Confidence 64
No 119
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=91.05 E-value=0.58 Score=32.93 Aligned_cols=83 Identities=14% Similarity=0.210 Sum_probs=49.5
Q ss_pred cCCCceEEEEECCCchhHHHHHHHHHcCC--EEEEEeCCccCHHHHhc----------cCCCEEEECCCCCCCCCc-chH
Q 027062 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGY--HFEVYRNDELTVEELKR----------KNPRGVLISPGPGAPQDS-GIS 87 (229)
Q Consensus 21 ~~~~~~ilvid~~~~~~~~~~~~l~~~g~--~~~v~~~~~~~~~~l~~----------~~~dgiii~GG~~~~~~~-~~~ 87 (229)
...+++|+|+|........+.+.|+..|. .+..........+.+.. ..+|.+|+--.- +... -.+
T Consensus 3 ~~~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l--~~~~g~~~ 80 (149)
T 1k66_A 3 GNATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNL--PGTDGREV 80 (149)
T ss_dssp SCTTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCC--SSSCHHHH
T ss_pred CCCCccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCC--CCCCHHHH
Confidence 34567899999755566778899999998 55554432122233443 467888774321 1212 234
Q ss_pred HHHHHHhC--CCCcEEEEeh
Q 027062 88 LQTVLELG--PTVPLFGVCM 105 (229)
Q Consensus 88 ~~~i~~~~--~~~PvlGIC~ 105 (229)
++.+++.. ...|++-+.-
T Consensus 81 ~~~l~~~~~~~~~~ii~~t~ 100 (149)
T 1k66_A 81 LQEIKQDEVLKKIPVVIMTT 100 (149)
T ss_dssp HHHHTTSTTGGGSCEEEEES
T ss_pred HHHHHhCcccCCCeEEEEeC
Confidence 55555443 5688888764
No 120
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=91.00 E-value=0.22 Score=40.40 Aligned_cols=64 Identities=17% Similarity=0.299 Sum_probs=43.0
Q ss_pred ceEEEEECCCch----hHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhC---CC
Q 027062 25 NPIIVIDNYDSF----TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELG---PT 97 (229)
Q Consensus 25 ~~ilvid~~~~~----~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~---~~ 97 (229)
|+|++|-+.+.. ...+.++|++.|+++. ..++|.||..||.|. ++...+.+. .+
T Consensus 1 mki~ii~n~~~~~~~~~~~l~~~l~~~g~~v~-------------~~~~D~vv~lGGDGT------~l~aa~~~~~~~~~ 61 (272)
T 2i2c_A 1 MKYMITSKGDEKSDLLRLNMIAGFGEYDMEYD-------------DVEPEIVISIGGDGT------FLSAFHQYEERLDE 61 (272)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHTTSSCEEC-------------SSSCSEEEEEESHHH------HHHHHHHTGGGTTT
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCEeC-------------CCCCCEEEEEcCcHH------HHHHHHHHhhcCCC
Confidence 578888774322 2346777888888771 125799999999763 445555442 37
Q ss_pred CcEEEEehhH
Q 027062 98 VPLFGVCMGL 107 (229)
Q Consensus 98 ~PvlGIC~G~ 107 (229)
+|++||=.|.
T Consensus 62 ~PilGIn~G~ 71 (272)
T 2i2c_A 62 IAFIGIHTGH 71 (272)
T ss_dssp CEEEEEESSS
T ss_pred CCEEEEeCCC
Confidence 9999997774
No 121
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=90.57 E-value=0.2 Score=35.70 Aligned_cols=83 Identities=12% Similarity=0.176 Sum_probs=45.0
Q ss_pred cCCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHh----C
Q 027062 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL----G 95 (229)
Q Consensus 21 ~~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~-~~~~~i~~~----~ 95 (229)
...+++|+|+|........+.+.|+..|+.+..........+.+....+|.||+-= ..+...+ .+++.+++. .
T Consensus 11 ~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~--~mp~~~g~~~~~~lr~~~~~~~ 88 (143)
T 3m6m_D 11 RVRSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEEDYDAVIVDL--HMPGMNGLDMLKQLRVMQASGM 88 (143)
T ss_dssp ----CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHHSCCSEEEEES--CCSSSCHHHHHHHHHHHHHTTC
T ss_pred ccccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEeC--CCCCCCHHHHHHHHHhchhccC
Confidence 34567899999754456778888988898887654321112233344789888731 1122222 345556532 2
Q ss_pred CCCcEEEEeh
Q 027062 96 PTVPLFGVCM 105 (229)
Q Consensus 96 ~~~PvlGIC~ 105 (229)
...|++-+..
T Consensus 89 ~~~pii~~s~ 98 (143)
T 3m6m_D 89 RYTPVVVLSA 98 (143)
T ss_dssp CCCCEEEEES
T ss_pred CCCeEEEEeC
Confidence 4578887653
No 122
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=90.57 E-value=1.4 Score=29.53 Aligned_cols=78 Identities=17% Similarity=0.146 Sum_probs=47.0
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCc-chHHHHHHHhCCCCcEEEE
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFGV 103 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~-~~~~~~i~~~~~~~PvlGI 103 (229)
++|+|+|........+.+.|+..|+++..........+.+....+|.+++-=. .+... -.+.+.+++.....|++-+
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~~~~~~ii~~ 79 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGNYDLVILDIE--MPGISGLEVAGEIRKKKKDAKIILL 79 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSC--CSSSCHHHHHHHHHHHCTTCCEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEECC--CCCCCHHHHHHHHHccCCCCeEEEE
Confidence 47999997555667788889989998775543211122333346887776321 12222 2345666665566787765
Q ss_pred e
Q 027062 104 C 104 (229)
Q Consensus 104 C 104 (229)
.
T Consensus 80 s 80 (116)
T 3a10_A 80 T 80 (116)
T ss_dssp E
T ss_pred E
Confidence 4
No 123
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=90.51 E-value=1 Score=30.66 Aligned_cols=79 Identities=14% Similarity=0.188 Sum_probs=47.8
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCc-chHHHHHHHhCCCCcEEEE
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFGV 103 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~-~~~~~~i~~~~~~~PvlGI 103 (229)
.+|+|+|........+.+.|+..|+++..........+.+....+|.+++-=. .+... -.+.+.+++.....|++-+
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~~~~~~ii~~ 81 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMK--IPGMDGIEILKRMKVIDENIRVIIM 81 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESC--CTTCCHHHHHHHHHHHCTTCEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccCCCEEEEecC--CCCCCHHHHHHHHHHhCCCCCEEEE
Confidence 57999997555667788889888998764432211122233346888876321 12222 2355666666667898877
Q ss_pred eh
Q 027062 104 CM 105 (229)
Q Consensus 104 C~ 105 (229)
.-
T Consensus 82 s~ 83 (124)
T 1srr_A 82 TA 83 (124)
T ss_dssp ES
T ss_pred Ec
Confidence 53
No 124
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=90.41 E-value=1.5 Score=29.57 Aligned_cols=79 Identities=10% Similarity=0.150 Sum_probs=47.6
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCc-chHHHHHHHhCCCCcEEEE
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFGV 103 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~-~~~~~~i~~~~~~~PvlGI 103 (229)
++|+|+|........+...|+..|+++..........+.+....+|.+++--. .+... -..++.+++.....|++-+
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlil~D~~--l~~~~g~~~~~~l~~~~~~~~ii~~ 78 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLG--LPDEDGLSLIRRWRSNDVSLPILVL 78 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSC--CSSSCHHHHHHHHHHTTCCSCEEEE
T ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhccCCCEEEEecC--CCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 47999997555667788889989998765543211122333446888877321 22222 2345666665567888877
Q ss_pred eh
Q 027062 104 CM 105 (229)
Q Consensus 104 C~ 105 (229)
.-
T Consensus 79 s~ 80 (121)
T 2pl1_A 79 TA 80 (121)
T ss_dssp ES
T ss_pred ec
Confidence 53
No 125
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=90.38 E-value=0.45 Score=38.41 Aligned_cols=53 Identities=15% Similarity=0.141 Sum_probs=36.0
Q ss_pred CCCceEEEEECC--CchhHHHHHHHHHcCCEEEEEeCCcc--CHHHHhccCCCEEEECC
Q 027062 22 NNKNPIIVIDNY--DSFTYNLCQYMGELGYHFEVYRNDEL--TVEELKRKNPRGVLISP 76 (229)
Q Consensus 22 ~~~~~ilvid~~--~~~~~~~~~~l~~~g~~~~v~~~~~~--~~~~l~~~~~dgiii~G 76 (229)
+.+++||+|+.. ......+.++|+..|++|.++...+. +.++|. +||.||+.-
T Consensus 2 ~~m~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~--~yDvIIl~d 58 (259)
T 3rht_A 2 NAMTRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLA--KQDLVILSD 58 (259)
T ss_dssp ----CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHH--TCSEEEEES
T ss_pred CCCceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHHh--cCCEEEEcC
Confidence 445789999731 12346688899999999999887654 335666 679999973
No 126
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=90.37 E-value=0.76 Score=32.78 Aligned_cols=82 Identities=7% Similarity=-0.003 Sum_probs=47.1
Q ss_pred CceEEEEECCCchhHHHHHHHHHc-CCE-EEEEeCCccCHHHHhc-cCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcE
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGEL-GYH-FEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL 100 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~-g~~-~~v~~~~~~~~~~l~~-~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~Pv 100 (229)
+++|+|+|........+.+.|+.. |.. +..........+.+.. ..+|.+|+--.-. ..+.-.+++.+++.....|+
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~-~~~g~~~~~~l~~~~~~~~i 81 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNLP-DAEAIDGLVRLKRFDPSNAV 81 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCCCSEEEECC-------CHHHHHHHHHHCTTSEE
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhccCCCCEEEEeCCCC-CCchHHHHHHHHHhCCCCeE
Confidence 568999997555667788889887 874 4444322112233444 4688887743211 11223456677766667899
Q ss_pred EEEehh
Q 027062 101 FGVCMG 106 (229)
Q Consensus 101 lGIC~G 106 (229)
+-++--
T Consensus 82 i~ls~~ 87 (154)
T 2qsj_A 82 ALISGE 87 (154)
T ss_dssp EEC---
T ss_pred EEEeCC
Confidence 887644
No 127
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=90.33 E-value=1 Score=35.38 Aligned_cols=83 Identities=14% Similarity=0.220 Sum_probs=52.7
Q ss_pred cCCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCCCc
Q 027062 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVP 99 (229)
Q Consensus 21 ~~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~-~~~~~i~~~~~~~P 99 (229)
...+++|+|||........+...|+..|+++..........+.+....+|.+|+-= ..+...+ .+++.+++.....|
T Consensus 20 ~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~--~lp~~~g~~~~~~lr~~~~~~~ 97 (250)
T 3r0j_A 20 TTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDV--XMPGMDGFGVLRRLRADGIDAP 97 (250)
T ss_dssp CCSSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEES--CCSSSCHHHHHHHHHHTTCCCC
T ss_pred CCCCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeC--CCCCCCHHHHHHHHHhcCCCCC
Confidence 34567999999755566778889999999887554321112233344789888732 1222222 45667777666789
Q ss_pred EEEEeh
Q 027062 100 LFGVCM 105 (229)
Q Consensus 100 vlGIC~ 105 (229)
|+-+..
T Consensus 98 ii~lt~ 103 (250)
T 3r0j_A 98 ALFLTA 103 (250)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 887765
No 128
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=90.23 E-value=0.76 Score=31.94 Aligned_cols=82 Identities=11% Similarity=0.019 Sum_probs=49.2
Q ss_pred CCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccC-CCEEEECCCCCCCC-CcchHHHHHHHh-CCCC
Q 027062 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKN-PRGVLISPGPGAPQ-DSGISLQTVLEL-GPTV 98 (229)
Q Consensus 22 ~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~-~dgiii~GG~~~~~-~~~~~~~~i~~~-~~~~ 98 (229)
..+.+|+|+|........+.+.|++.|+++............+.... +|.||+--. .+. +.-.+++.+++. ....
T Consensus 5 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~~~~ 82 (136)
T 3hdv_A 5 AARPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLMITDLR--MQPESGLDLIRTIRASERAAL 82 (136)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCTTEEEEEECSC--CSSSCHHHHHHHHHTSTTTTC
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhCCCCcEEEEecc--CCCCCHHHHHHHHHhcCCCCC
Confidence 34678999997555667788999999998876543211122233334 777776321 122 222456666665 4678
Q ss_pred cEEEEeh
Q 027062 99 PLFGVCM 105 (229)
Q Consensus 99 PvlGIC~ 105 (229)
|++-+.-
T Consensus 83 ~ii~~s~ 89 (136)
T 3hdv_A 83 SIIVVSG 89 (136)
T ss_dssp EEEEEES
T ss_pred CEEEEeC
Confidence 9888764
No 129
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=89.98 E-value=3 Score=29.37 Aligned_cols=34 Identities=12% Similarity=0.249 Sum_probs=23.8
Q ss_pred CCCceEEEEECC---CchhHHHHHHHHHcCCEEEEEe
Q 027062 22 NNKNPIIVIDNY---DSFTYNLCQYMGELGYHFEVYR 55 (229)
Q Consensus 22 ~~~~~ilvid~~---~~~~~~~~~~l~~~g~~~~v~~ 55 (229)
+..+.|+||..- +.+...+.+.|.+.|+++.++.
T Consensus 2 ~~p~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVn 38 (122)
T 3ff4_A 2 NAMKKTLILGATPETNRYAYLAAERLKSHGHEFIPVG 38 (122)
T ss_dssp CCCCCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEES
T ss_pred CCCCEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEEC
Confidence 345679999642 3355678888988898776664
No 130
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=89.80 E-value=1.2 Score=34.32 Aligned_cols=80 Identities=10% Similarity=0.187 Sum_probs=49.2
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCc-chHHHHHHHhCCCCcEE
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLF 101 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~-~~~~~~i~~~~~~~Pvl 101 (229)
..++|+|+|........+...|+..|+++..........+.+....+|.+|+--. .+... -.+++.+++.....|++
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~--l~~~~g~~~~~~l~~~~~~~~ii 83 (233)
T 1ys7_A 6 TSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDIN--MPVLDGVSVVTALRAMDNDVPVC 83 (233)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESS--CSSSCHHHHHHHHHHTTCCCCEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHhcCCCCCEE
Confidence 3578999997555667788889989998764432211122333447888877322 12222 24566666666678988
Q ss_pred EEe
Q 027062 102 GVC 104 (229)
Q Consensus 102 GIC 104 (229)
-+.
T Consensus 84 ~lt 86 (233)
T 1ys7_A 84 VLS 86 (233)
T ss_dssp EEE
T ss_pred EEE
Confidence 765
No 131
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=89.59 E-value=1.7 Score=32.80 Aligned_cols=88 Identities=16% Similarity=0.112 Sum_probs=47.2
Q ss_pred ceEEEEECC---------CchhHHHHHHHHHcCCEEEEEeCCccCHHH----Hhcc--CCCEEEECCCCCCCCCcchHHH
Q 027062 25 NPIIVIDNY---------DSFTYNLCQYMGELGYHFEVYRNDELTVEE----LKRK--NPRGVLISPGPGAPQDSGISLQ 89 (229)
Q Consensus 25 ~~ilvid~~---------~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~----l~~~--~~dgiii~GG~~~~~~~~~~~~ 89 (229)
+++.||--+ |+....+.++|++.|+++.....-..+.+. +... ++|.||.+||-+-- .++...+
T Consensus 4 ~~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~DlVittGG~g~~-~~D~T~e 82 (172)
T 3kbq_A 4 KNASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALEVSDLVVSSGGLGPT-FDDMTVE 82 (172)
T ss_dssp CEEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEEESCCSSS-TTCCHHH
T ss_pred CEEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEEcCCCcCC-cccchHH
Confidence 566666333 345567899999999988644311011222 2221 47999999997643 2222223
Q ss_pred HHHH-hCCCCcEEEEehhHHHHHHHhC
Q 027062 90 TVLE-LGPTVPLFGVCMGLQCIGEAFG 115 (229)
Q Consensus 90 ~i~~-~~~~~PvlGIC~G~Qlla~alG 115 (229)
.+.+ ++ +++.+.=--.+.|-..++
T Consensus 83 a~a~~~~--~~l~~~~e~~~~i~~~~~ 107 (172)
T 3kbq_A 83 GFAKCIG--QDLRIDEDALAMIKKKYG 107 (172)
T ss_dssp HHHHHHT--CCCEECHHHHHHHHHHHC
T ss_pred HHHHHcC--CCeeeCHHHHHHHHHHHc
Confidence 3332 33 344444444555555554
No 132
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=89.32 E-value=1.7 Score=33.63 Aligned_cols=79 Identities=18% Similarity=0.232 Sum_probs=48.3
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCCCcEEE
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG 102 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~-~~~~~i~~~~~~~PvlG 102 (229)
+++|+|+|........+...|+..|+++..........+.+....+|.+|+-=. .+...+ .+++.+++.. ..|++-
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvilD~~--l~~~~g~~~~~~lr~~~-~~~ii~ 81 (238)
T 2gwr_A 5 RQRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLM--LPGMNGIDVCRVLRADS-GVPIVM 81 (238)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHCCSEEEEESS--CSSSCHHHHHHHHHTTC-CCCEEE
T ss_pred cCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHhCC-CCcEEE
Confidence 468999997555667788889989998775543222223344447888877322 122222 3455555543 688887
Q ss_pred Eeh
Q 027062 103 VCM 105 (229)
Q Consensus 103 IC~ 105 (229)
+.-
T Consensus 82 lt~ 84 (238)
T 2gwr_A 82 LTA 84 (238)
T ss_dssp EEE
T ss_pred EeC
Confidence 753
No 133
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=89.18 E-value=0.95 Score=34.17 Aligned_cols=81 Identities=15% Similarity=0.245 Sum_probs=48.1
Q ss_pred CCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCCCcE
Q 027062 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPL 100 (229)
Q Consensus 22 ~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~-~~~~~i~~~~~~~Pv 100 (229)
..+.+|+|+|........+...|+..|+++..........+.+....+|.+|+-= ..+...+ .+.+.+++...+.|+
T Consensus 2 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~--~lp~~~g~~~~~~l~~~~~~~~i 79 (208)
T 1yio_A 2 TAKPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQHGCLVLDM--RMPGMSGIELQEQLTAISDGIPI 79 (208)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCTTSCEEEEEES--CCSSSCHHHHHHHHHHTTCCCCE
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhhccCCCEEEEeC--CCCCCCHHHHHHHHHhcCCCCCE
Confidence 3456899999755566778888988899877543211111122233577776521 1222222 456666666667898
Q ss_pred EEEe
Q 027062 101 FGVC 104 (229)
Q Consensus 101 lGIC 104 (229)
+-+.
T Consensus 80 i~ls 83 (208)
T 1yio_A 80 VFIT 83 (208)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8776
No 134
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=89.09 E-value=1.4 Score=33.58 Aligned_cols=80 Identities=11% Similarity=0.117 Sum_probs=49.9
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCc-chHHHHHHHhCCCCcEEE
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFG 102 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~-~~~~~~i~~~~~~~PvlG 102 (229)
+++|+|+|........+...|+..|+++..........+.+....+|.+|+--. .+... -.+++.+++.....|++-
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~--l~~~~g~~~~~~lr~~~~~~~ii~ 79 (225)
T 1kgs_A 2 NVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIM--LPVHDGWEILKSMRESGVNTPVLM 79 (225)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhcCCCCCEEE
Confidence 368999997555667788889989998865442211122333447888877322 12222 245666776666789988
Q ss_pred Eeh
Q 027062 103 VCM 105 (229)
Q Consensus 103 IC~ 105 (229)
+.-
T Consensus 80 ls~ 82 (225)
T 1kgs_A 80 LTA 82 (225)
T ss_dssp EES
T ss_pred EeC
Confidence 764
No 135
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=88.88 E-value=1.8 Score=29.84 Aligned_cols=79 Identities=15% Similarity=0.225 Sum_probs=47.4
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCC-CcchHHHHHHHhCCCCcEEEE
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELGPTVPLFGV 103 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~-~~~~~~~~i~~~~~~~PvlGI 103 (229)
.+|+|+|........+...|+..|+.+............+....+|.+++--. .+. +.-.+.+.+++.....|++-+
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~~g~~~~~~l~~~~~~~~ii~~ 81 (136)
T 1mvo_A 4 KKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVM--LPKLDGIEVCKQLRQQKLMFPILML 81 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESS--CSSSCHHHHHHHHHHTTCCCCEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhhcCCCEEEEecC--CCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 57999997555667788889888998765432211122233336888876321 122 222355666665566888877
Q ss_pred eh
Q 027062 104 CM 105 (229)
Q Consensus 104 C~ 105 (229)
.-
T Consensus 82 s~ 83 (136)
T 1mvo_A 82 TA 83 (136)
T ss_dssp EC
T ss_pred EC
Confidence 53
No 136
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=88.83 E-value=0.53 Score=32.37 Aligned_cols=78 Identities=15% Similarity=0.268 Sum_probs=48.1
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHh--CCCCcEE
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTVPLF 101 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~-~~~~~i~~~--~~~~Pvl 101 (229)
++|+|+|........+...|+..|+++..........+.+....+|.+++-= ..+...+ .+.+.+++. ..+.|++
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~~~dlvllD~--~~p~~~g~~~~~~l~~~~~~~~~pii 80 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLXI--MMPVMDGFTVLKKLQEKEEWKRIPVI 80 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTBCCSEEEECS--CCSSSCHHHHHHHHHTSTTTTTSCEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEec--cCCCCcHHHHHHHHHhcccccCCCEE
Confidence 5799999755566778888999999887554321222334445788887732 2222223 345666543 2568988
Q ss_pred EEe
Q 027062 102 GVC 104 (229)
Q Consensus 102 GIC 104 (229)
-+.
T Consensus 81 ~~s 83 (122)
T 3gl9_A 81 VLT 83 (122)
T ss_dssp EEE
T ss_pred EEe
Confidence 776
No 137
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=88.26 E-value=0.57 Score=32.86 Aligned_cols=80 Identities=15% Similarity=0.254 Sum_probs=49.2
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHh--CCCCcE
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTVPL 100 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~-~~~~~i~~~--~~~~Pv 100 (229)
+.+|+|+|........+...|+..|+++..........+.+....+|.||+-= ..+...+ .+.+.+++. ...+|+
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~--~lp~~~g~~~~~~lr~~~~~~~~pi 81 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKNLPDALICDV--LLPGIDGYTLCKRVRQHPLTKTLPI 81 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEES--CCSSSCHHHHHHHHHHSGGGTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeC--CCCCCCHHHHHHHHHcCCCcCCccE
Confidence 46899999755566778888999999887554321122334444788887731 1222222 455666653 356898
Q ss_pred EEEeh
Q 027062 101 FGVCM 105 (229)
Q Consensus 101 lGIC~ 105 (229)
+-+.-
T Consensus 82 i~~t~ 86 (136)
T 3t6k_A 82 LMLTA 86 (136)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 87763
No 138
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=88.14 E-value=1.6 Score=30.38 Aligned_cols=82 Identities=9% Similarity=0.095 Sum_probs=49.5
Q ss_pred CCCceEEEEECCCchhHHHHHHHHHcCC--EEEEEeCCccCHHHHhc-----cCCCEEEECCCCCCCCCc-chHHHHHHH
Q 027062 22 NNKNPIIVIDNYDSFTYNLCQYMGELGY--HFEVYRNDELTVEELKR-----KNPRGVLISPGPGAPQDS-GISLQTVLE 93 (229)
Q Consensus 22 ~~~~~ilvid~~~~~~~~~~~~l~~~g~--~~~v~~~~~~~~~~l~~-----~~~dgiii~GG~~~~~~~-~~~~~~i~~ 93 (229)
..+++|+|||........+...|+..|. .+..........+.+.. ..+|.||+-=. .+... -.+++.+++
T Consensus 7 ~~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~ 84 (146)
T 3ilh_A 7 RKIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDIN--MPGINGWELIDLFKQ 84 (146)
T ss_dssp CCEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESS--CSSSCHHHHHHHHHH
T ss_pred CccceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCC--CCCCCHHHHHHHHHH
Confidence 3457899999755566778888999998 45444322112233444 46888887321 12222 245667776
Q ss_pred ----hCCCCcEEEEeh
Q 027062 94 ----LGPTVPLFGVCM 105 (229)
Q Consensus 94 ----~~~~~PvlGIC~ 105 (229)
.....|++-+.-
T Consensus 85 ~~~~~~~~~~ii~~t~ 100 (146)
T 3ilh_A 85 HFQPMKNKSIVCLLSS 100 (146)
T ss_dssp HCGGGTTTCEEEEECS
T ss_pred hhhhccCCCeEEEEeC
Confidence 456788887764
No 139
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=88.07 E-value=0.68 Score=31.62 Aligned_cols=78 Identities=18% Similarity=0.253 Sum_probs=46.6
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCCCcEEEE
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV 103 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~-~~~~~i~~~~~~~PvlGI 103 (229)
.+|+|+|........+...|+..|+++..........+.+....+|.+++-= ..+...+ .+.+.+++. ...|++-+
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlii~D~--~~p~~~g~~~~~~lr~~-~~~~ii~~ 79 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDI--MLPNKDGVEVCREVRKK-YDMPIIML 79 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCSEEEEET--TSTTTHHHHHHHHHHTT-CCSCEEEE
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhhCCCCEEEEeC--CCCCCCHHHHHHHHHhc-CCCCEEEE
Confidence 5799999755566778888999999887654321112234445789888732 1122222 344555543 36788776
Q ss_pred eh
Q 027062 104 CM 105 (229)
Q Consensus 104 C~ 105 (229)
.-
T Consensus 80 t~ 81 (120)
T 3f6p_A 80 TA 81 (120)
T ss_dssp EE
T ss_pred EC
Confidence 53
No 140
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=87.82 E-value=2 Score=28.95 Aligned_cols=78 Identities=13% Similarity=0.098 Sum_probs=45.7
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCc-chHHHHHHHhCCCCcEEE
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFG 102 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~-~~~~~~i~~~~~~~PvlG 102 (229)
+.+|+|+|........+...|+..|+++..........+.+....+|.+++--. .+... -.+.+.+++. ...|++-
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~-~~~~ii~ 79 (123)
T 1xhf_A 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDIN--LPGKNGLLLARELREQ-ANVALMF 79 (123)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEECSS--CSSSCHHHHHHHHHHH-CCCEEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhcCCCCEEEEcCC--CCCCCHHHHHHHHHhC-CCCcEEE
Confidence 457999997555666788888888988765432211122233346888776321 12222 2345566554 5688876
Q ss_pred Ee
Q 027062 103 VC 104 (229)
Q Consensus 103 IC 104 (229)
+.
T Consensus 80 ~s 81 (123)
T 1xhf_A 80 LT 81 (123)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 141
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=87.75 E-value=1.1 Score=34.38 Aligned_cols=77 Identities=9% Similarity=0.043 Sum_probs=47.5
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEEEe
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlGIC 104 (229)
|+|+|+|........+...|+..|+++..........+.+....+|.+| .++ .+.-.+++.+++.....|++-+.
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi-lp~----~~g~~~~~~lr~~~~~~~ii~lt 75 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVM-VSD----KNALSFVSRIKEKHSSIVVLVSS 75 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTTSCCSEEE-ECC----TTHHHHHHHHHHHCTTSEEEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhcCCCCEEE-eCC----CCHHHHHHHHHhCCCCCcEEEEE
Confidence 5799999755566778888988999887444221112233444689888 222 11224556666652279998886
Q ss_pred hh
Q 027062 105 MG 106 (229)
Q Consensus 105 ~G 106 (229)
--
T Consensus 76 ~~ 77 (223)
T 2hqr_A 76 DN 77 (223)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 142
>2r47_A Uncharacterized protein MTH_862; unknown function, structural genomics, APC5901, PSI-2; 1.88A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=87.41 E-value=0.18 Score=37.25 Aligned_cols=81 Identities=14% Similarity=0.110 Sum_probs=47.3
Q ss_pred CCceEEEEECCCch---hHHHHHHHHHcCCEEEEEeCCccC-------------HHHHhccCCCEEEECCCCCCCC---C
Q 027062 23 NKNPIIVIDNYDSF---TYNLCQYMGELGYHFEVYRNDELT-------------VEELKRKNPRGVLISPGPGAPQ---D 83 (229)
Q Consensus 23 ~~~~ilvid~~~~~---~~~~~~~l~~~g~~~~v~~~~~~~-------------~~~l~~~~~dgiii~GG~~~~~---~ 83 (229)
...+|+.+...+-+ ...+.-++|. -+...++..+.. ..+..+.++|.|||.||-..|. +
T Consensus 25 ~~~kIvf~Gs~GvCtPFaeL~~YaiR~--~~~~FiP~~d~e~a~~l~~~~~G~~~~~~~~~~~D~vVllGGLAMPk~~v~ 102 (157)
T 2r47_A 25 DAERIGFAGVPGVCTPFAQLFAYAVRD--KDNIFIPNTDFSKARKLEVTEYGVELGEISPGNVDVLVLLGGLSMPGIGSD 102 (157)
T ss_dssp TCSEEEEEECTTTTHHHHHHHHHHTTT--SEEEEEETTCGGGCEEEEEETTEEEEEEECCCCEEEEEEEGGGGSTTTSCC
T ss_pred CCCeEEEECCCeeecCHHhhheeeeeC--CceEEcCCCChhHceEEEEecCceEeccccCCCCCEEEEeccccCCCCCCC
Confidence 36789999875443 2344444555 566666653211 0111113679999999966654 3
Q ss_pred cchHHHHHHHh-CCCCcEEEEeh
Q 027062 84 SGISLQTVLEL-GPTVPLFGVCM 105 (229)
Q Consensus 84 ~~~~~~~i~~~-~~~~PvlGIC~ 105 (229)
.....+.+.++ .....++|||+
T Consensus 103 ~e~v~~li~ki~~~~~kiiGvCF 125 (157)
T 2r47_A 103 IEDVKKLVEDALEEGGELMGLCY 125 (157)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHhhcCCCCEEEEEh
Confidence 33444555554 24567999996
No 143
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=87.35 E-value=0.6 Score=32.74 Aligned_cols=79 Identities=14% Similarity=0.188 Sum_probs=45.8
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCCCcEE
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF 101 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~-~~~~~i~~~~~~~Pvl 101 (229)
.+++|+|+|........+...|+..|+.+..........+.+....+|.+++-=. .+...+ .+++.+++.. ..|++
T Consensus 3 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~--l~~~~g~~l~~~l~~~~-~~~ii 79 (136)
T 2qzj_A 3 LQTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSNKYDLIFLEII--LSDGDGWTLCKKIRNVT-TCPIV 79 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCCCSEEEEESE--ETTEEHHHHHHHHHTTC-CCCEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCEEEEeCC--CCCCCHHHHHHHHccCC-CCCEE
Confidence 3568999997555667788889888988765432211122333346888876211 111122 3455555543 68887
Q ss_pred EEe
Q 027062 102 GVC 104 (229)
Q Consensus 102 GIC 104 (229)
-+.
T Consensus 80 ~ls 82 (136)
T 2qzj_A 80 YMT 82 (136)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 144
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=87.08 E-value=0.71 Score=34.41 Aligned_cols=81 Identities=15% Similarity=0.190 Sum_probs=50.1
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCc-chHHHHHHHhCCCCcEE
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLF 101 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~-~~~~~~i~~~~~~~Pvl 101 (229)
.+++|+|||........+...|+..|+.+..........+.+....+|.||+-= ..+... -.+++.+++.....||+
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~--~lp~~~g~~~~~~l~~~~~~~~ii 83 (184)
T 3rqi_A 6 SDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEKFEFITVXL--HLGNDSGLSLIAPLCDLQPDARIL 83 (184)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTTSCCSEEEECS--EETTEESHHHHHHHHHHCTTCEEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEec--cCCCccHHHHHHHHHhcCCCCCEE
Confidence 456899999755566778888999999876554321222334444688887721 111112 24566777666678988
Q ss_pred EEeh
Q 027062 102 GVCM 105 (229)
Q Consensus 102 GIC~ 105 (229)
-+.-
T Consensus 84 ~lt~ 87 (184)
T 3rqi_A 84 VLTG 87 (184)
T ss_dssp EEES
T ss_pred EEeC
Confidence 7653
No 145
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=86.95 E-value=1.8 Score=30.16 Aligned_cols=82 Identities=9% Similarity=0.064 Sum_probs=43.1
Q ss_pred cCCCceEEEEECCCchhHHHHHHHHHc-CCEEEEEeCCc-cCHHHHhccCCCEEEECCCCCCCCCc-chHHHHHHHhCCC
Q 027062 21 KNNKNPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYRNDE-LTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPT 97 (229)
Q Consensus 21 ~~~~~~ilvid~~~~~~~~~~~~l~~~-g~~~~v~~~~~-~~~~~l~~~~~dgiii~GG~~~~~~~-~~~~~~i~~~~~~ 97 (229)
...+++|+|+|........+.+.|+.. |+.+...-.+. ...+.+....+|.+|+--. .+... -.+++.+++....
T Consensus 6 ~~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlvi~d~~--l~~~~g~~~~~~l~~~~~~ 83 (143)
T 2qv0_A 6 SGEKMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNKVDAIFLDIN--IPSLDGVLLAQNISQFAHK 83 (143)
T ss_dssp ----CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHCCCSEEEECSS--CSSSCHHHHHHHHTTSTTC
T ss_pred CCCceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCEEEEecC--CCCCCHHHHHHHHHccCCC
Confidence 345678999997555667788888876 77644222221 1112333446888877422 11122 2344555554445
Q ss_pred CcEEEEe
Q 027062 98 VPLFGVC 104 (229)
Q Consensus 98 ~PvlGIC 104 (229)
.||+-+.
T Consensus 84 ~~ii~~s 90 (143)
T 2qv0_A 84 PFIVFIT 90 (143)
T ss_dssp CEEEEEE
T ss_pred ceEEEEe
Confidence 6676655
No 146
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=86.59 E-value=2.7 Score=31.90 Aligned_cols=82 Identities=11% Similarity=0.143 Sum_probs=50.3
Q ss_pred CCCceEEEEECCCchhHHHHHHHHHcCC-EEEEEeCCccCHHHHhc-------------cCCCEEEECCCCCCCCCcc-h
Q 027062 22 NNKNPIIVIDNYDSFTYNLCQYMGELGY-HFEVYRNDELTVEELKR-------------KNPRGVLISPGPGAPQDSG-I 86 (229)
Q Consensus 22 ~~~~~ilvid~~~~~~~~~~~~l~~~g~-~~~v~~~~~~~~~~l~~-------------~~~dgiii~GG~~~~~~~~-~ 86 (229)
...++|||||........+.+.|+..|+ .+..........+.+.. ..||.||+== ..+...+ .
T Consensus 59 ~~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~--~lp~~~G~e 136 (206)
T 3mm4_A 59 LRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDC--QMPEMDGYE 136 (206)
T ss_dssp TTTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEES--CCSSSCHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcC--CCCCCCHHH
Confidence 3467899999755566778899999998 66655432112222322 2688887731 1122222 4
Q ss_pred HHHHHHHh----CCCCcEEEEeh
Q 027062 87 SLQTVLEL----GPTVPLFGVCM 105 (229)
Q Consensus 87 ~~~~i~~~----~~~~PvlGIC~ 105 (229)
+++.+++. ...+||+-+.-
T Consensus 137 l~~~lr~~~~~~~~~~piI~ls~ 159 (206)
T 3mm4_A 137 ATREIRKVEKSYGVRTPIIAVSG 159 (206)
T ss_dssp HHHHHHHHHHTTTCCCCEEEEES
T ss_pred HHHHHHhhhhhcCCCCcEEEEEC
Confidence 55666653 46789988875
No 147
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=86.11 E-value=2.3 Score=28.55 Aligned_cols=78 Identities=14% Similarity=0.262 Sum_probs=46.0
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCC-ccCHHHHhccCCCEEEECCCCCCCCCc-chHHHHHHHhCCCCcEEE
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND-ELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFG 102 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~-~~~~~~l~~~~~dgiii~GG~~~~~~~-~~~~~~i~~~~~~~PvlG 102 (229)
++|+|+|........+.+.|+..|+++...-.+ ....+.+....+|.+++-=. .+... -.+++.+++.....|++-
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~~~~dlil~D~~--l~~~~g~~~~~~l~~~~~~~~ii~ 80 (120)
T 1tmy_A 3 KRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDIT--MPEMNGIDAIKEIMKIDPNAKIIV 80 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEECS--CGGGCHHHHHHHHHHHCTTCCEEE
T ss_pred ceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHhcCCCEEEEeCC--CCCCcHHHHHHHHHhhCCCCeEEE
Confidence 579999975556677888898899985432222 11122233346887776321 12112 235566666666788877
Q ss_pred Ee
Q 027062 103 VC 104 (229)
Q Consensus 103 IC 104 (229)
+.
T Consensus 81 ~s 82 (120)
T 1tmy_A 81 CS 82 (120)
T ss_dssp EE
T ss_pred Ee
Confidence 65
No 148
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=86.08 E-value=0.9 Score=31.78 Aligned_cols=79 Identities=18% Similarity=0.185 Sum_probs=47.3
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHh--CCCCcE
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTVPL 100 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~-~~~~~i~~~--~~~~Pv 100 (229)
+++|+|+|........+.+.|+..|+.+..........+.+....+|.+|+-=. .+...+ .+++.+++. ...+|+
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~~~~~~i 80 (138)
T 3c3m_A 3 LYTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNATPPDLVLLDIM--MEPMDGWETLERIKTDPATRDIPV 80 (138)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSSCHHHHHHHHHHSTTTTTSCE
T ss_pred cceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhccCCCEEEEeCC--CCCCCHHHHHHHHHcCcccCCCCE
Confidence 358999997555667788889989998775432211122333446888776321 122222 345666653 246898
Q ss_pred EEEe
Q 027062 101 FGVC 104 (229)
Q Consensus 101 lGIC 104 (229)
+-+.
T Consensus 81 i~ls 84 (138)
T 3c3m_A 81 LMLT 84 (138)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8775
No 149
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=85.97 E-value=2 Score=32.71 Aligned_cols=58 Identities=14% Similarity=0.118 Sum_probs=37.0
Q ss_pred CCceEEEEEC--------CCchhHHHHHHHHHcCCEEEEEe--CCcc-CH-HHHhc---cCCCEEEECCCCCC
Q 027062 23 NKNPIIVIDN--------YDSFTYNLCQYMGELGYHFEVYR--NDEL-TV-EELKR---KNPRGVLISPGPGA 80 (229)
Q Consensus 23 ~~~~ilvid~--------~~~~~~~~~~~l~~~g~~~~v~~--~~~~-~~-~~l~~---~~~dgiii~GG~~~ 80 (229)
.++++.||-- +|+....+..+|++.|+++.... .|+. .. +.+.+ .++|.||.+||.+-
T Consensus 29 ~~~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVIttGGts~ 101 (185)
T 3rfq_A 29 VVGRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSVGGTGV 101 (185)
T ss_dssp CCEEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESCCSS
T ss_pred CCCEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCCCCC
Confidence 4677888833 45566778999999999876432 1321 11 12222 26899999999653
No 150
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=85.85 E-value=1.3 Score=32.96 Aligned_cols=69 Identities=17% Similarity=0.251 Sum_probs=40.2
Q ss_pred CCceEEEEEC---------CCchhHHHHHHHHHcCCEEE---EEeCCccCH-HHHhc---cCCCEEEECCCCCCCCCcch
Q 027062 23 NKNPIIVIDN---------YDSFTYNLCQYMGELGYHFE---VYRNDELTV-EELKR---KNPRGVLISPGPGAPQDSGI 86 (229)
Q Consensus 23 ~~~~ilvid~---------~~~~~~~~~~~l~~~g~~~~---v~~~~~~~~-~~l~~---~~~dgiii~GG~~~~~~~~~ 86 (229)
.++++.||-- +|++...+..+|++.|+++. +++.+ ... +.+.+ .++|.||.+||.+- ...+.
T Consensus 6 ~~~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVittGG~s~-g~~D~ 83 (164)
T 3pzy_A 6 TTRSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVADG-SPVGEALRKAIDDDVDVILTSGGTGI-APTDS 83 (164)
T ss_dssp -CCEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHHHTTCSEEEEESCCSS-STTCC
T ss_pred CCCEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEECCCCCC-CCCcc
Confidence 3567777743 34556678999999999875 34322 221 22222 25899999999653 33333
Q ss_pred HHHHHHH
Q 027062 87 SLQTVLE 93 (229)
Q Consensus 87 ~~~~i~~ 93 (229)
..+.+.+
T Consensus 84 t~eal~~ 90 (164)
T 3pzy_A 84 TPDQTVA 90 (164)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 3344444
No 151
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=85.74 E-value=2.6 Score=31.56 Aligned_cols=60 Identities=17% Similarity=0.129 Sum_probs=36.3
Q ss_pred cCCCceEEEEECC--------------CchhHHHHHHHHHcCCEEEEEe--CCcc-CH-HHHh----ccCCCEEEECCCC
Q 027062 21 KNNKNPIIVIDNY--------------DSFTYNLCQYMGELGYHFEVYR--NDEL-TV-EELK----RKNPRGVLISPGP 78 (229)
Q Consensus 21 ~~~~~~ilvid~~--------------~~~~~~~~~~l~~~g~~~~v~~--~~~~-~~-~~l~----~~~~dgiii~GG~ 78 (229)
...+.++.||--. |.....+.++|+++|+++.... .|+. .. +.+. ..++|.||.+||-
T Consensus 12 ~~~~~~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittGG~ 91 (178)
T 3iwt_A 12 APKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGT 91 (178)
T ss_dssp -CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCC
T ss_pred CCCCCEEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecCCc
Confidence 3456788888432 3344568999999999886433 2321 11 1121 2258999999997
Q ss_pred CC
Q 027062 79 GA 80 (229)
Q Consensus 79 ~~ 80 (229)
+-
T Consensus 92 g~ 93 (178)
T 3iwt_A 92 GY 93 (178)
T ss_dssp SS
T ss_pred cc
Confidence 63
No 152
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=85.68 E-value=2.5 Score=29.90 Aligned_cols=82 Identities=13% Similarity=0.101 Sum_probs=47.6
Q ss_pred CCCceEEEEECCCchhHHHHHHHHHcCC--EEEEEeCCccCHHHHh---------ccCCCEEEECCCCCCCCCc-chHHH
Q 027062 22 NNKNPIIVIDNYDSFTYNLCQYMGELGY--HFEVYRNDELTVEELK---------RKNPRGVLISPGPGAPQDS-GISLQ 89 (229)
Q Consensus 22 ~~~~~ilvid~~~~~~~~~~~~l~~~g~--~~~v~~~~~~~~~~l~---------~~~~dgiii~GG~~~~~~~-~~~~~ 89 (229)
+.+++|+|||........+.+.|+..|. .+..........+.+. ...+|.||+-=. .+... -.+++
T Consensus 2 ~~~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~--l~~~~g~~~~~ 79 (152)
T 3heb_A 2 SLSVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLN--LPDMTGIDILK 79 (152)
T ss_dssp ---CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSB--CSSSBHHHHHH
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCC--CCCCcHHHHHH
Confidence 4567999999755566778899999998 5554432211122232 235777776321 12222 24566
Q ss_pred HHHH--hCCCCcEEEEeh
Q 027062 90 TVLE--LGPTVPLFGVCM 105 (229)
Q Consensus 90 ~i~~--~~~~~PvlGIC~ 105 (229)
.+++ ...+.|++-+.-
T Consensus 80 ~lr~~~~~~~~pii~~t~ 97 (152)
T 3heb_A 80 LVKENPHTRRSPVVILTT 97 (152)
T ss_dssp HHHHSTTTTTSCEEEEES
T ss_pred HHHhcccccCCCEEEEec
Confidence 7776 456789887764
No 153
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=85.61 E-value=1.5 Score=36.97 Aligned_cols=81 Identities=14% Similarity=0.252 Sum_probs=48.3
Q ss_pred CCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCCCcE
Q 027062 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPL 100 (229)
Q Consensus 22 ~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~-~~~~~i~~~~~~~Pv 100 (229)
+.+++|+|||........+.+.|+..|+++..........+.+....+|.||+= -..+...+ .+.+.+++....+||
T Consensus 3 ~~~~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~dlvllD--~~mp~~~G~~~~~~lr~~~~~~pi 80 (394)
T 3eq2_A 3 KVSATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESEQPDLVICD--LRMPQIDGLELIRRIRQTASETPI 80 (394)
T ss_dssp -CEEEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHHHSCCSEEEEC--CCSSSSCTHHHHHHHHHTTCCCCE
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhhCCCCEEEEc--CCCCCCCHHHHHHHHHhhCCCCcE
Confidence 345789999975556677888999999877543321111223344478887762 11222222 456677766667888
Q ss_pred EEEe
Q 027062 101 FGVC 104 (229)
Q Consensus 101 lGIC 104 (229)
+-+-
T Consensus 81 i~lt 84 (394)
T 3eq2_A 81 IVLS 84 (394)
T ss_dssp EEC-
T ss_pred EEEE
Confidence 7654
No 154
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=85.50 E-value=5.8 Score=29.67 Aligned_cols=53 Identities=19% Similarity=0.223 Sum_probs=33.9
Q ss_pred CceEEEEEC-CCchhHH----HHHHHHH-cCCEEEEEeCCccCHHHHhccCCCEEEECCCCC
Q 027062 24 KNPIIVIDN-YDSFTYN----LCQYMGE-LGYHFEVYRNDELTVEELKRKNPRGVLISPGPG 79 (229)
Q Consensus 24 ~~~ilvid~-~~~~~~~----~~~~l~~-~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~ 79 (229)
+++|+||-. ..+.+.. +.+.+++ .|++++++...+.+.+++.+ +|+||| |.|-
T Consensus 4 M~kiliiy~S~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~~~~~~~l~~--aD~ii~-gsP~ 62 (188)
T 2ark_A 4 MGKVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDEATKEDVLW--ADGLAV-GSPT 62 (188)
T ss_dssp CEEEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTTCCHHHHHH--CSEEEE-EEEC
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHhhcCCCeEEEEEhhhCCHHHHHh--CCEEEE-EeCc
Confidence 467888853 2234444 4445566 78899988876666677764 588887 4443
No 155
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=85.48 E-value=1.8 Score=30.14 Aligned_cols=79 Identities=18% Similarity=0.218 Sum_probs=45.8
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCC-CcchHHHHHHHhC--CCCcE
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQ-DSGISLQTVLELG--PTVPL 100 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~-~~~~~~~~i~~~~--~~~Pv 100 (229)
+++|+|+|........+.+.|+.. +.+..........+.+....+|.||+-=. .+. +...+++.+++.. .+.|+
T Consensus 3 ~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~~~~~~i 79 (140)
T 3n53_A 3 LKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDHHHPDLVILDMD--IIGENSPNLCLKLKRSKGLKNVPL 79 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHHHCCSEEEEETT--C------CHHHHHHTSTTCTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhcCCCCEEEEeCC--CCCCcHHHHHHHHHcCcccCCCCE
Confidence 578999997555667788888777 66665443211223334447888887422 111 1223556666654 67888
Q ss_pred EEEeh
Q 027062 101 FGVCM 105 (229)
Q Consensus 101 lGIC~ 105 (229)
+-+.-
T Consensus 80 i~~s~ 84 (140)
T 3n53_A 80 ILLFS 84 (140)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 87763
No 156
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=84.46 E-value=10 Score=30.05 Aligned_cols=91 Identities=14% Similarity=0.077 Sum_probs=51.9
Q ss_pred CceEEEEECCCc--hhHHHHHHHHH---cCCEEEEEeCCccC----------------HH---HHhccCCCEEEECCCCC
Q 027062 24 KNPIIVIDNYDS--FTYNLCQYMGE---LGYHFEVYRNDELT----------------VE---ELKRKNPRGVLISPGPG 79 (229)
Q Consensus 24 ~~~ilvid~~~~--~~~~~~~~l~~---~g~~~~v~~~~~~~----------------~~---~l~~~~~dgiii~GG~~ 79 (229)
.|||+||+-.++ .+..+.+.++. .|.+++.+.....+ .+ .+...++|+|++.-...
T Consensus 1 ~mrilvINPnts~~~T~~i~~~~~~~~~p~~~i~~~t~~~gp~~i~~~~d~~~a~~~l~~~~~~l~~~g~d~iviaCnt~ 80 (245)
T 3qvl_A 1 SVRIQVINPNTSLAMTETIGAAARAVAAPGTEILAVCPRAGVPSIEGHFDEAIAAVGVLEQIRAGREQGVDGHVIASFGD 80 (245)
T ss_dssp CEEEEEECSSCCHHHHHHHHHHHHHHCCTTEEEEEECCSSSCSSCCSHHHHHHHHHHHHHHHHHHHHHTCSEEEEC-CCC
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHHhcCCCCEEEEEeCCCCchhhcChhHHHHHHHHHHHHHHHHHHCCCCEEEEeCCCh
Confidence 379999998665 44566666654 35666655422110 11 12233789999976432
Q ss_pred CCCCcchHHHHHHHhCCCCcEEEEehhHHHHHHHhCCeeeec
Q 027062 80 APQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRS 121 (229)
Q Consensus 80 ~~~~~~~~~~~i~~~~~~~PvlGIC~G~Qlla~alGg~v~~~ 121 (229)
+ .+ +.+++.- .+||+||.--.-..+..+|+++.-.
T Consensus 81 ~-----~l-~~lr~~~-~iPvigi~e~~~~~a~~~~~rigVl 115 (245)
T 3qvl_A 81 P-----GL-LAARELA-QGPVIGIAEAAMHMATMVATRFSIV 115 (245)
T ss_dssp T-----TH-HHHHHHC-SSCEEEHHHHHHHHHHHHCSCEEEE
T ss_pred h-----HH-HHHHHHc-CCCEECccHHHHHHHHHcCCEEEEE
Confidence 2 22 5566542 5999999765444455566655443
No 157
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=84.40 E-value=3.1 Score=29.39 Aligned_cols=85 Identities=15% Similarity=0.098 Sum_probs=49.7
Q ss_pred ccCCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCc--cCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCC
Q 027062 20 SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDE--LTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPT 97 (229)
Q Consensus 20 ~~~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~--~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~ 97 (229)
....+.+|+|+|........+.+.|+..|....+..... ...+.+....+|.||+--.-. ..+.-.+++.+++....
T Consensus 11 ~~~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~-~~~g~~~~~~l~~~~~~ 89 (152)
T 3eul_A 11 PQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMP-GMDGAQVAAAVRSYELP 89 (152)
T ss_dssp ---CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHHCCSEEEEETTCS-SSCHHHHHHHHHHTTCS
T ss_pred CCCceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHhcCCC
Confidence 345678899999755566778899999886544432221 112233344789888742211 11223456677766667
Q ss_pred CcEEEEeh
Q 027062 98 VPLFGVCM 105 (229)
Q Consensus 98 ~PvlGIC~ 105 (229)
.|++-+.-
T Consensus 90 ~~ii~~s~ 97 (152)
T 3eul_A 90 TRVLLISA 97 (152)
T ss_dssp CEEEEEES
T ss_pred CeEEEEEc
Confidence 88887763
No 158
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=84.24 E-value=2.4 Score=29.27 Aligned_cols=79 Identities=13% Similarity=0.130 Sum_probs=44.0
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCc--cCHHHHhccCCCEEEECCCCCCCCCc-chHHHHHHHhCCCCcE
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDE--LTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPL 100 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~--~~~~~l~~~~~dgiii~GG~~~~~~~-~~~~~~i~~~~~~~Pv 100 (229)
+++|+|+|........+...|+..|....+....+ ...+.+....+|.+|+-= ..+... -.+++.+++.....|+
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~~~~dlvilD~--~lp~~~g~~~~~~l~~~~~~~~i 80 (133)
T 3b2n_A 3 LTSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEYNPNVVILDI--EMPGMTGLEVLAEIRKKHLNIKV 80 (133)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHCCSEEEECS--SCSSSCHHHHHHHHHHTTCSCEE
T ss_pred ceEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhhcCCCEEEEec--CCCCCCHHHHHHHHHHHCCCCcE
Confidence 35799999755566778888887762222222211 111223334688777632 122222 2456667665567888
Q ss_pred EEEe
Q 027062 101 FGVC 104 (229)
Q Consensus 101 lGIC 104 (229)
+-+.
T Consensus 81 i~ls 84 (133)
T 3b2n_A 81 IIVT 84 (133)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8774
No 159
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=83.69 E-value=0.78 Score=31.48 Aligned_cols=80 Identities=15% Similarity=0.182 Sum_probs=43.6
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCC-EEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHh--CCCC
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGY-HFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTV 98 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~-~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~-~~~~~i~~~--~~~~ 98 (229)
.+++|+|+|........+.+.|+..|+ .+..........+.+....+|.+++-= ..+...+ .+.+.+++. ....
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~dlvl~D~--~l~~~~g~~~~~~l~~~~~~~~~ 82 (129)
T 1p6q_A 5 EKIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNPHHLVISDF--NMPKMDGLGLLQAVRANPATKKA 82 (129)
T ss_dssp SCCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHTSCCSEEEECS--SSCSSCHHHHHHHHTTCTTSTTC
T ss_pred ccCeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHcCCCCEEEEeC--CCCCCCHHHHHHHHhcCccccCC
Confidence 456899999755566778888888887 444332211112223334678777621 1222222 344555443 2467
Q ss_pred cEEEEe
Q 027062 99 PLFGVC 104 (229)
Q Consensus 99 PvlGIC 104 (229)
|++-+.
T Consensus 83 ~ii~~s 88 (129)
T 1p6q_A 83 AFIILT 88 (129)
T ss_dssp EEEECC
T ss_pred CEEEEe
Confidence 777664
No 160
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=83.63 E-value=2.9 Score=30.24 Aligned_cols=84 Identities=13% Similarity=0.097 Sum_probs=45.4
Q ss_pred cccCCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCc--cCHHHHhccCCCEEEECCCCCCCCCc-chHHHHHHHhC
Q 027062 19 KSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDE--LTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELG 95 (229)
Q Consensus 19 ~~~~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~--~~~~~l~~~~~dgiii~GG~~~~~~~-~~~~~~i~~~~ 95 (229)
+|+..+++|+|+|........+.+.|+..|....+..... ...+.+....+|.||+-=. .+... -.+++.+++..
T Consensus 20 ~M~~~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlvilD~~--l~~~~g~~l~~~lr~~~ 97 (164)
T 3t8y_A 20 HMTDRVIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIELKPDVITMDIE--MPNLNGIEALKLIMKKA 97 (164)
T ss_dssp ----CCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEECSS--CSSSCHHHHHHHHHHHS
T ss_pred ccccCccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhccCCCCEEEEeCC--CCCCCHHHHHHHHHhcC
Confidence 4555678999999755566778888888764433322221 1122333447888877321 11222 24556666654
Q ss_pred CCCcEEEEeh
Q 027062 96 PTVPLFGVCM 105 (229)
Q Consensus 96 ~~~PvlGIC~ 105 (229)
. .|++-+..
T Consensus 98 ~-~~ii~~s~ 106 (164)
T 3t8y_A 98 P-TRVIMVSS 106 (164)
T ss_dssp C-CEEEEEES
T ss_pred C-ceEEEEec
Confidence 4 77776653
No 161
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=83.50 E-value=3.5 Score=34.91 Aligned_cols=79 Identities=15% Similarity=0.194 Sum_probs=50.4
Q ss_pred CCceEEEEECCCc--h---hHHHHHHHHHcCCEEEEEeCCccC--------H-----------HHHhc--cCCCEEEECC
Q 027062 23 NKNPIIVIDNYDS--F---TYNLCQYMGELGYHFEVYRNDELT--------V-----------EELKR--KNPRGVLISP 76 (229)
Q Consensus 23 ~~~~ilvid~~~~--~---~~~~~~~l~~~g~~~~v~~~~~~~--------~-----------~~l~~--~~~dgiii~G 76 (229)
.-++|+||--... . ...+.+||.+.|+++.+-..-... . .++++ .++|.+|..|
T Consensus 37 ~~k~I~iv~K~~~~~~~~~~~~l~~~L~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlvI~lG 116 (365)
T 3pfn_A 37 SPKSVLVIKKMRDASLLQPFKELCTHLMEENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDISNQIDFIICLG 116 (365)
T ss_dssp CCCEEEEEECTTCGGGHHHHHHHHHHHHHTSCEEEEEHHHHHSHHHHHCSTTHHHHHHCEEECTTTCCCTTTCSEEEEES
T ss_pred CCCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEehHHhhhhccccccccccccccccccccChhhcccCCCEEEEEc
Confidence 3457899976433 2 356889999999888654310000 0 00111 2579999999
Q ss_pred CCCCCCCcchHHHHHHHhC-CCCcEEEEehhH
Q 027062 77 GPGAPQDSGISLQTVLELG-PTVPLFGVCMGL 107 (229)
Q Consensus 77 G~~~~~~~~~~~~~i~~~~-~~~PvlGIC~G~ 107 (229)
|.|. ++...+.+. ..+||+||-+|.
T Consensus 117 GDGT------~L~aa~~~~~~~~PvlGiN~G~ 142 (365)
T 3pfn_A 117 GDGT------LLYASSLFQGSVPPVMAFHLGS 142 (365)
T ss_dssp STTH------HHHHHHHCSSSCCCEEEEESSS
T ss_pred ChHH------HHHHHHHhccCCCCEEEEcCCC
Confidence 9764 566666543 578999999884
No 162
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=83.45 E-value=2.6 Score=39.26 Aligned_cols=82 Identities=9% Similarity=0.007 Sum_probs=53.4
Q ss_pred ceEEEEECCC-ch-------hHHHHHHHHHcCCEEEEEeCCccCHHHHhcc-CCCEEEECCCCCCCC----Ccc-hHHHH
Q 027062 25 NPIIVIDNYD-SF-------TYNLCQYMGELGYHFEVYRNDELTVEELKRK-NPRGVLISPGPGAPQ----DSG-ISLQT 90 (229)
Q Consensus 25 ~~ilvid~~~-~~-------~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~-~~dgiii~GG~~~~~----~~~-~~~~~ 90 (229)
|+|||||... .. ...+...|++.|+++......+.-...+... ++|.||+.= +.+. ..+ .+++.
T Consensus 1 m~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~~~~~d~vilDi--~lp~~~~~~~G~~ll~~ 78 (755)
T 2vyc_A 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSY--QMEHPDEHQNVRQLIGK 78 (755)
T ss_dssp CEEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTTCCCSEEEEEC--CCCSHHHHHHHHHHHHH
T ss_pred CeEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCcEEEEeC--CCCcccccccHHHHHHH
Confidence 5899998654 44 5678889999999988776432222333333 489999852 2232 111 25677
Q ss_pred HHHhCCCCcEEEEehhHH
Q 027062 91 VLELGPTVPLFGVCMGLQ 108 (229)
Q Consensus 91 i~~~~~~~PvlGIC~G~Q 108 (229)
+++...++||+=+.-=.+
T Consensus 79 iR~~~~~iPIi~lTa~~~ 96 (755)
T 2vyc_A 79 LHERQQNVPVFLLGDREK 96 (755)
T ss_dssp HHHHSTTCCEEEEECHHH
T ss_pred HHHhCCCCCEEEEecCCc
Confidence 777766799998776544
No 163
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=83.02 E-value=1.3 Score=29.97 Aligned_cols=79 Identities=14% Similarity=0.196 Sum_probs=46.3
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHh--CCCCcEE
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTVPLF 101 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~-~~~~~i~~~--~~~~Pvl 101 (229)
++|+|+|........+.+.|+..|+++............+....+|.+++-= ..+...+ .+.+.+++. ....|++
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~--~l~~~~g~~~~~~l~~~~~~~~~~ii 79 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDI--QLPEISGLEVTKWLKEDDDLAHIPVV 79 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEES--BCSSSBHHHHHHHHHHSTTTTTSCEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCCCCEEEEeC--CCCCCCHHHHHHHHHcCccccCCcEE
Confidence 4799999755566778888998999876543211111223333688877631 1122222 345666653 2468998
Q ss_pred EEeh
Q 027062 102 GVCM 105 (229)
Q Consensus 102 GIC~ 105 (229)
-+.-
T Consensus 80 ~~s~ 83 (124)
T 1mb3_A 80 AVTA 83 (124)
T ss_dssp EEC-
T ss_pred EEEC
Confidence 8764
No 164
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=82.92 E-value=1.1 Score=35.27 Aligned_cols=80 Identities=18% Similarity=0.293 Sum_probs=47.2
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCCCcEE
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF 101 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~-~~~~~i~~~~~~~Pvl 101 (229)
.+++|+|||....+...+...|+..|+.+..........+.+....+|.||+-=. .+...+ .+++.+++ ....||+
T Consensus 36 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~DlvllD~~--lp~~~G~~l~~~lr~-~~~~~iI 112 (249)
T 3q9s_A 36 NEQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKAREDHPDLILLDLG--LPDFDGGDVVQRLRK-NSALPII 112 (249)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEEECC--SCHHHHHHHHHHHHT-TCCCCEE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEcCC--CCCCCHHHHHHHHHc-CCCCCEE
Confidence 3568999997555667788889988987665543211122334447898887321 111111 24455555 4568888
Q ss_pred EEeh
Q 027062 102 GVCM 105 (229)
Q Consensus 102 GIC~ 105 (229)
-+.-
T Consensus 113 ~lt~ 116 (249)
T 3q9s_A 113 VLTA 116 (249)
T ss_dssp EEES
T ss_pred EEEC
Confidence 7764
No 165
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=82.64 E-value=1.1 Score=30.80 Aligned_cols=77 Identities=9% Similarity=0.072 Sum_probs=46.1
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhc---cCCCEEEECCCCCCCCCc-chHHHHHHHhCCCC
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKR---KNPRGVLISPGPGAPQDS-GISLQTVLELGPTV 98 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~---~~~dgiii~GG~~~~~~~-~~~~~~i~~~~~~~ 98 (229)
.+++|+|||........+.+.|+..+..+..... .++... ..+|.+|+--. .+... -.+++.+++.....
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~----~~~~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~~~ 75 (135)
T 3eqz_A 2 SLNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQH----PRAFLTLSLNKQDIIILDLM--MPDMDGIEVIRHLAEHKSPA 75 (135)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESC----HHHHTTSCCCTTEEEEEECC--TTTTHHHHHHHHHHHTTCCC
T ss_pred CcceEEEEeCCHHHHHHHHHHHHhhcceeeeecC----HHHHHHhhccCCCEEEEeCC--CCCCCHHHHHHHHHhCCCCC
Confidence 3578999997555667788888888767765543 222221 13777776321 11222 23466667666678
Q ss_pred cEEEEeh
Q 027062 99 PLFGVCM 105 (229)
Q Consensus 99 PvlGIC~ 105 (229)
|++-+.-
T Consensus 76 ~ii~~s~ 82 (135)
T 3eqz_A 76 SLILISG 82 (135)
T ss_dssp EEEEEES
T ss_pred CEEEEEe
Confidence 8877653
No 166
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=82.64 E-value=3 Score=31.16 Aligned_cols=57 Identities=19% Similarity=0.190 Sum_probs=34.1
Q ss_pred CceEEEEECC-------CchhHHHHHHHHHcCCEEEEEe--CCccC-H-HHHhcc----CCCEEEECCCCCC
Q 027062 24 KNPIIVIDNY-------DSFTYNLCQYMGELGYHFEVYR--NDELT-V-EELKRK----NPRGVLISPGPGA 80 (229)
Q Consensus 24 ~~~ilvid~~-------~~~~~~~~~~l~~~g~~~~v~~--~~~~~-~-~~l~~~----~~dgiii~GG~~~ 80 (229)
++++.||--+ |+....+.++|++.|+++.... .|+.. . +.+... ++|.||.+||.+-
T Consensus 10 ~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittGG~g~ 81 (172)
T 1mkz_A 10 PTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTGL 81 (172)
T ss_dssp CCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESCCSS
T ss_pred CCEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCC
Confidence 4577777433 3344568899999999876432 13211 1 122221 3899999999763
No 167
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=82.60 E-value=1.5 Score=29.90 Aligned_cols=81 Identities=17% Similarity=0.257 Sum_probs=46.2
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCC-EEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHH--hCCCC
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGY-HFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLE--LGPTV 98 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~-~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~-~~~~~i~~--~~~~~ 98 (229)
+.++|+|+|........+.+.++..|+ .+..........+.+....+|.+++-= ..+...+ .+.+.+++ .....
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~--~l~~~~g~~l~~~l~~~~~~~~~ 80 (128)
T 1jbe_A 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDW--NMPNMDGLELLKTIRAXXAMSAL 80 (128)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTTCCCCEEEEES--CCSSSCHHHHHHHHHC--CCTTC
T ss_pred CccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhcCCCEEEEeC--CCCCCCHHHHHHHHHhhcccCCC
Confidence 457899999755566778888888888 454443221112233334678777632 1222222 34555654 23467
Q ss_pred cEEEEeh
Q 027062 99 PLFGVCM 105 (229)
Q Consensus 99 PvlGIC~ 105 (229)
|++-+.-
T Consensus 81 ~ii~~s~ 87 (128)
T 1jbe_A 81 PVLMVTA 87 (128)
T ss_dssp CEEEEES
T ss_pred cEEEEec
Confidence 8887753
No 168
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=82.39 E-value=1.6 Score=29.53 Aligned_cols=77 Identities=18% Similarity=0.283 Sum_probs=45.0
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCCCcEEEE
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV 103 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~-~~~~~i~~~~~~~PvlGI 103 (229)
.+|+|+|........+.+.|+..|+.+............+....+|.+++-= ..+...+ .+.+.+++ ....|++-+
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~--~l~~~~g~~~~~~l~~-~~~~~ii~~ 79 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDI--NLPDENGLMLTRALRE-RSTVGIILV 79 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEES--CCSSSCHHHHHHHHHT-TCCCEEEEE
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhcCCCCEEEEeC--CCCCCChHHHHHHHHh-cCCCCEEEE
Confidence 5799999755566778888988898876544221111223333688877632 1122222 34555555 456787766
Q ss_pred e
Q 027062 104 C 104 (229)
Q Consensus 104 C 104 (229)
.
T Consensus 80 s 80 (122)
T 1zgz_A 80 T 80 (122)
T ss_dssp E
T ss_pred E
Confidence 4
No 169
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=82.13 E-value=8 Score=28.93 Aligned_cols=37 Identities=14% Similarity=0.058 Sum_probs=22.4
Q ss_pred cCCCceEEEEECC---CchhHHHHHHHHH---cCCEEEEEeCC
Q 027062 21 KNNKNPIIVIDNY---DSFTYNLCQYMGE---LGYHFEVYRND 57 (229)
Q Consensus 21 ~~~~~~ilvid~~---~~~~~~~~~~l~~---~g~~~~v~~~~ 57 (229)
|..+|+|++|..- ++.+..+++++.+ .|.+++++...
T Consensus 3 m~~~Mkilii~gS~r~~g~t~~la~~i~~~l~~g~~v~~~dl~ 45 (193)
T 1rtt_A 3 LSDDIKVLGISGSLRSGSYNSAALQEAIGLVPPGMSIELADIS 45 (193)
T ss_dssp ----CEEEEEESCCSTTCHHHHHHHHHHTTCCTTCEEEECCCT
T ss_pred CCCCceEEEEECCCCCCChHHHHHHHHHHhccCCCeEEEEeHH
Confidence 3445789999753 2566777776643 37888877654
No 170
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=82.10 E-value=3.6 Score=30.61 Aligned_cols=58 Identities=17% Similarity=0.244 Sum_probs=34.9
Q ss_pred CCceEEEEECC-------CchhHHHHHHHHHcCCEEEEEe--CCcc-CH-HHHhc----cCCCEEEECCCCCC
Q 027062 23 NKNPIIVIDNY-------DSFTYNLCQYMGELGYHFEVYR--NDEL-TV-EELKR----KNPRGVLISPGPGA 80 (229)
Q Consensus 23 ~~~~ilvid~~-------~~~~~~~~~~l~~~g~~~~v~~--~~~~-~~-~~l~~----~~~dgiii~GG~~~ 80 (229)
.++++.||--+ |+....+..+|++.|+++.... .|+. .. +.+.+ .++|.||.+||.+-
T Consensus 12 ~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~ 84 (169)
T 1y5e_A 12 KEVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGTGI 84 (169)
T ss_dssp CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEECCCSS
T ss_pred cCCEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCC
Confidence 35677777432 3445668899999999876432 1321 11 12222 15799999998763
No 171
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=81.98 E-value=12 Score=27.84 Aligned_cols=34 Identities=21% Similarity=0.086 Sum_probs=21.4
Q ss_pred CceEEEEECCCchhHHH----HHHHHHcCCEEEEEeCC
Q 027062 24 KNPIIVIDNYDSFTYNL----CQYMGELGYHFEVYRND 57 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~----~~~l~~~g~~~~v~~~~ 57 (229)
+|+|+||-.-.+.+..+ .+.+++.|++++++...
T Consensus 4 mmkilii~~S~g~T~~la~~i~~~l~~~g~~v~~~~l~ 41 (199)
T 2zki_A 4 KPNILVLFYGYGSIVELAKEIGKGAEEAGAEVKIRRVR 41 (199)
T ss_dssp CCEEEEEECCSSHHHHHHHHHHHHHHHHSCEEEEEECC
T ss_pred CcEEEEEEeCccHHHHHHHHHHHHHHhCCCEEEEEehh
Confidence 46888886433344444 44455579999888654
No 172
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=81.70 E-value=1.3 Score=29.71 Aligned_cols=77 Identities=12% Similarity=0.208 Sum_probs=43.2
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCCCcEEEE
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV 103 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~-~~~~~i~~~~~~~PvlGI 103 (229)
++|+|+|........+.+.++..|+.+............+....+|.+++--. .+...+ ...+.+++ ....|++-+
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~-~~~~~ii~~ 78 (121)
T 1zh2_A 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLG--LPDGDGIEFIRDLRQ-WSAVPVIVL 78 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESE--ETTEEHHHHHHHHHT-TCCCCEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHhcCCCCEEEEeCC--CCCCcHHHHHHHHHh-CCCCcEEEE
Confidence 57999997555667788889888988765432211122233336888776211 111122 23455553 345787766
Q ss_pred e
Q 027062 104 C 104 (229)
Q Consensus 104 C 104 (229)
.
T Consensus 79 s 79 (121)
T 1zh2_A 79 S 79 (121)
T ss_dssp E
T ss_pred E
Confidence 4
No 173
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=81.63 E-value=1.5 Score=29.41 Aligned_cols=78 Identities=17% Similarity=0.288 Sum_probs=45.5
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCCCcEEEE
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV 103 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~-~~~~~i~~~~~~~PvlGI 103 (229)
++|+|+|........+...++..|+++..........+.+....+|.+++-- ..+...+ .+.+.+++. ...|++-+
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~--~l~~~~g~~~~~~l~~~-~~~~ii~~ 78 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDL--MLPEIDGLEVAKTIRKT-SSVPILML 78 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEECS--SCSSSCHHHHHHHHHHH-CCCCEEEE
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHhCCCCEEEEec--cCCCCCHHHHHHHHHhC-CCCCEEEE
Confidence 4799999755566778888888899876544221112223333688777632 1122222 345555553 46888877
Q ss_pred eh
Q 027062 104 CM 105 (229)
Q Consensus 104 C~ 105 (229)
.-
T Consensus 79 s~ 80 (120)
T 2a9o_A 79 SA 80 (120)
T ss_dssp ES
T ss_pred ec
Confidence 53
No 174
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=81.44 E-value=4 Score=33.83 Aligned_cols=89 Identities=16% Similarity=0.100 Sum_probs=50.5
Q ss_pred CceEEEEECCCc----hhHHHHHHHHHcCCEEEEEeCCcc-CHH----HHhccCCCEEEECCCCCCCCCcchHHHHHHHh
Q 027062 24 KNPIIVIDNYDS----FTYNLCQYMGELGYHFEVYRNDEL-TVE----ELKRKNPRGVLISPGPGAPQDSGISLQTVLEL 94 (229)
Q Consensus 24 ~~~ilvid~~~~----~~~~~~~~l~~~g~~~~v~~~~~~-~~~----~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~ 94 (229)
.++++||-|..+ ....+.++|++.|+++.+...... ... +....++|.||+.||-|+..+ .++.+.+.
T Consensus 29 ~~~~~vi~Np~sg~~~~~~~i~~~l~~~g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~GGDGTl~~---v~~~l~~~ 105 (332)
T 2bon_A 29 FPASLLILNGKSTDNLPLREAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGGDGTINE---VSTALIQC 105 (332)
T ss_dssp -CCEEEEECSSSTTCHHHHHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEESHHHHHH---HHHHHHHC
T ss_pred cceEEEEECCCCCCCchHHHHHHHHHHcCCcEEEEEecCcchHHHHHHHHHhcCCCEEEEEccchHHHH---HHHHHhhc
Confidence 356777766433 224577888889999887764311 111 122236899999999765322 12222222
Q ss_pred --CCCCcEEEEehhHHH-HHHHhC
Q 027062 95 --GPTVPLFGVCMGLQC-IGEAFG 115 (229)
Q Consensus 95 --~~~~PvlGIC~G~Ql-la~alG 115 (229)
..++|+.+|=.|--= ++..+|
T Consensus 106 ~~~~~~plgiiP~Gt~N~fa~~l~ 129 (332)
T 2bon_A 106 EGDDIPALGILPLGTANDFATSVG 129 (332)
T ss_dssp CSSCCCEEEEEECSSSCHHHHHTT
T ss_pred ccCCCCeEEEecCcCHHHHHHhcC
Confidence 466887777455433 555554
No 175
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=81.38 E-value=1.2 Score=30.41 Aligned_cols=79 Identities=15% Similarity=0.245 Sum_probs=44.2
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhC--CCCcEE
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELG--PTVPLF 101 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~-~~~~~i~~~~--~~~Pvl 101 (229)
++|+|+|........+...|+..|+++..........+.+....+|.+++-= ..+...+ .+.+.+++.. ...|++
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlvi~D~--~l~~~~g~~~~~~l~~~~~~~~~~ii 80 (127)
T 2jba_A 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLAW--MLPGGSGIQFIKHLRRESMTRDIPVV 80 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCSSSCCSEEEEES--EETTEEHHHHHHHHHTSTTTTTSCEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhccCCCEEEEec--CCCCCCHHHHHHHHHhCcccCCCCEE
Confidence 5799999755566778888988999876543211111112223578777621 1111122 3455555433 568887
Q ss_pred EEeh
Q 027062 102 GVCM 105 (229)
Q Consensus 102 GIC~ 105 (229)
-+.-
T Consensus 81 ~~s~ 84 (127)
T 2jba_A 81 MLTA 84 (127)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 7653
No 176
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=80.70 E-value=5.3 Score=31.99 Aligned_cols=52 Identities=21% Similarity=0.115 Sum_probs=34.9
Q ss_pred CceEEEEECCCc--------hhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEEC
Q 027062 24 KNPIIVIDNYDS--------FTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLIS 75 (229)
Q Consensus 24 ~~~ilvid~~~~--------~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~ 75 (229)
+++|+||..+.+ ....+.+++++.|+++.++..++.+...+...++|.++..
T Consensus 2 ~~~i~il~gg~s~e~~~s~~~~~~l~~al~~~G~~v~~~~~~~~~~~~~~~~~~d~v~~~ 61 (306)
T 1iow_A 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIA 61 (306)
T ss_dssp CCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCGGGTTTTTEEEEEEC
T ss_pred CcEEEEEeCCCCccceEcHHhHHHHHHHHHHCCCeEEEEecCchHHHHhhccCCCEEEEc
Confidence 468999976443 1245788899999999988765444334433467777654
No 177
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=80.44 E-value=1.6 Score=30.49 Aligned_cols=78 Identities=6% Similarity=0.146 Sum_probs=45.2
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHh-----CCCC
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL-----GPTV 98 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~-~~~~~i~~~-----~~~~ 98 (229)
++|+|+|........+...|+..|..+..........+.+....+|.+|+-= ..+...+ .+++.+++. ....
T Consensus 11 ~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~~~~dlvllD~--~lp~~~g~~~~~~l~~~~~~~~~~~~ 88 (140)
T 3c97_A 11 LSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNRQFDVIIMDI--QMPVMDGLEAVSEIRNYERTHNTKRA 88 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHHSCCSEEEECT--TCCSSCHHHHHHHHHHHHHHHTCCCC
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhcCCCCEEEEeC--CCCCCcHHHHHHHHHhhhhhcCCCce
Confidence 5899999755566778888888898877664321112233344688777632 1122222 345555542 2456
Q ss_pred cEEEEe
Q 027062 99 PLFGVC 104 (229)
Q Consensus 99 PvlGIC 104 (229)
|++.+.
T Consensus 89 ~ii~~s 94 (140)
T 3c97_A 89 SIIAIT 94 (140)
T ss_dssp CCEEEE
T ss_pred EEEEEe
Confidence 777665
No 178
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=80.43 E-value=1.2 Score=29.97 Aligned_cols=78 Identities=18% Similarity=0.271 Sum_probs=43.8
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCc-chHHHHHHHhCCCCcEEE
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFG 102 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~-~~~~~~i~~~~~~~PvlG 102 (229)
+++|+|+|........+...|+..|+.+..........+.+....+|.+++-=. .+... -.+++.+++.....|++-
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~--~~~~~g~~~~~~l~~~~~~~~ii~ 80 (124)
T 1dc7_A 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDIR--MPGMDGLALLKQIKQRHPMLPVII 80 (124)
T ss_dssp CCCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSSCCCSCEEECSC--SSHHHHCSTHHHHHHHCTTSCCCC
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCCEEEEeee--cCCCCHHHHHHHHHhhCCCCCEEE
Confidence 457999997666777888889888887664443211122233335787766321 11111 123555555444566655
Q ss_pred E
Q 027062 103 V 103 (229)
Q Consensus 103 I 103 (229)
+
T Consensus 81 ~ 81 (124)
T 1dc7_A 81 M 81 (124)
T ss_dssp B
T ss_pred E
Confidence 4
No 179
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=79.05 E-value=5.1 Score=33.18 Aligned_cols=88 Identities=17% Similarity=0.166 Sum_probs=50.5
Q ss_pred ceEEEEECCCch-------hHHHHHHHHHcCCEEEEEeCCcc-CHH----HHhccCCCEEEECCCCCCCCCcchHHHHHH
Q 027062 25 NPIIVIDNYDSF-------TYNLCQYMGELGYHFEVYRNDEL-TVE----ELKRKNPRGVLISPGPGAPQDSGISLQTVL 92 (229)
Q Consensus 25 ~~ilvid~~~~~-------~~~~~~~l~~~g~~~~v~~~~~~-~~~----~l~~~~~dgiii~GG~~~~~~~~~~~~~i~ 92 (229)
++++||-|..+- ...+.++|++.|+++.+...... ... +....++|.||+.||-|+..+ .+..+.
T Consensus 25 ~~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GGDGTv~~---v~~~l~ 101 (337)
T 2qv7_A 25 KRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDGTLNE---VVNGIA 101 (337)
T ss_dssp EEEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEECHHHHHH---HHHHHT
T ss_pred ceEEEEECCCCCCCchHHHHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcCchHHHH---HHHHHH
Confidence 457777664331 23577888889999887764321 111 222236899999999764321 112221
Q ss_pred HhCCCCcEEEEehhHH-HHHHHhC
Q 027062 93 ELGPTVPLFGVCMGLQ-CIGEAFG 115 (229)
Q Consensus 93 ~~~~~~PvlGIC~G~Q-lla~alG 115 (229)
+.+.++|+.+|=.|-- .++..+|
T Consensus 102 ~~~~~~pl~iIP~GT~N~lAr~Lg 125 (337)
T 2qv7_A 102 EKPNRPKLGVIPMGTVNDFGRALH 125 (337)
T ss_dssp TCSSCCEEEEEECSSCCHHHHHTT
T ss_pred hCCCCCcEEEecCCcHhHHHHHcC
Confidence 2245788888876642 3444444
No 180
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=78.74 E-value=7.3 Score=30.97 Aligned_cols=56 Identities=18% Similarity=0.163 Sum_probs=31.2
Q ss_pred CCceEEEEECC--CchhH----HHHHHHHHcCCEEEEEeCCccCH-------HHHhccCCCEEEECCCC
Q 027062 23 NKNPIIVIDNY--DSFTY----NLCQYMGELGYHFEVYRNDELTV-------EELKRKNPRGVLISPGP 78 (229)
Q Consensus 23 ~~~~ilvid~~--~~~~~----~~~~~l~~~g~~~~v~~~~~~~~-------~~l~~~~~dgiii~GG~ 78 (229)
.+.+|.+|-.. +.|.. .+.+.+++.|+.+.+......+. +.+...++||||+.+..
T Consensus 3 ~~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~ 71 (305)
T 3g1w_A 3 LNETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAID 71 (305)
T ss_dssp --CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSS
T ss_pred CCceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 34566666432 23433 35566778899998843221222 12233479999998753
No 181
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=78.50 E-value=4 Score=30.74 Aligned_cols=59 Identities=15% Similarity=0.093 Sum_probs=35.4
Q ss_pred CCCceEEEEECCC--------------chhHHHHHHHHHcCCEEEEEe--CCcc-CH-HHHhcc--C--CCEEEECCCCC
Q 027062 22 NNKNPIIVIDNYD--------------SFTYNLCQYMGELGYHFEVYR--NDEL-TV-EELKRK--N--PRGVLISPGPG 79 (229)
Q Consensus 22 ~~~~~ilvid~~~--------------~~~~~~~~~l~~~g~~~~v~~--~~~~-~~-~~l~~~--~--~dgiii~GG~~ 79 (229)
..+.++.||--.| +....+..+|++.|+++.... .|+. .. +.+.+. + +|.||.+||.+
T Consensus 13 ~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVittGG~s 92 (178)
T 2pjk_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTG 92 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCS
T ss_pred CCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 3456777774432 234568899999999876432 1321 11 122221 3 89999999965
Q ss_pred C
Q 027062 80 A 80 (229)
Q Consensus 80 ~ 80 (229)
-
T Consensus 93 ~ 93 (178)
T 2pjk_A 93 Y 93 (178)
T ss_dssp S
T ss_pred C
Confidence 3
No 182
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=78.49 E-value=20 Score=29.32 Aligned_cols=36 Identities=19% Similarity=0.197 Sum_probs=26.5
Q ss_pred CCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCC
Q 027062 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND 57 (229)
Q Consensus 22 ~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~ 57 (229)
+..++|+||.-+.+--..++++|.+.|++|......
T Consensus 2 ~~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~ 37 (326)
T 3eag_A 2 NAMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAK 37 (326)
T ss_dssp -CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCC
Confidence 446789999876555555888888999999887653
No 183
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=78.46 E-value=3.6 Score=30.92 Aligned_cols=58 Identities=21% Similarity=0.191 Sum_probs=33.4
Q ss_pred CCceEEEEECC---------CchhHHHHHHHH---HcCCEEEEEe-CCccC-H-HHHhcc----CCCEEEECCCCCC
Q 027062 23 NKNPIIVIDNY---------DSFTYNLCQYMG---ELGYHFEVYR-NDELT-V-EELKRK----NPRGVLISPGPGA 80 (229)
Q Consensus 23 ~~~~ilvid~~---------~~~~~~~~~~l~---~~g~~~~v~~-~~~~~-~-~~l~~~----~~dgiii~GG~~~ 80 (229)
.++++.||--+ |+....+..+|+ +.|+++.... .|+.. . +.+... ++|.||.+||.+-
T Consensus 4 ~~~rv~IistGdE~~~G~i~Dsn~~~l~~~l~~l~~~G~~v~~~iv~Dd~~~I~~~l~~~~~~~~~DlVittGG~g~ 80 (178)
T 2pbq_A 4 KKAVIGVVTISDRASKGIYEDISGKAIIDYLKDVIITPFEVEYRVIPDERDLIEKTLIELADEKGCSLILTTGGTGP 80 (178)
T ss_dssp -CCEEEEEEECHHHHHTSSCCHHHHHHHHHHHHHBCSCCEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSS
T ss_pred CCCEEEEEEeCCcCCCCCeecchHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 45678887543 334456788787 8999873211 12211 1 122221 5899999999763
No 184
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=78.40 E-value=3.3 Score=30.66 Aligned_cols=47 Identities=17% Similarity=0.249 Sum_probs=29.3
Q ss_pred CchhHHHHHHHHHcCCEEEEEe--CCccC-H-HHHhcc----CCCEEEECCCCCC
Q 027062 34 DSFTYNLCQYMGELGYHFEVYR--NDELT-V-EELKRK----NPRGVLISPGPGA 80 (229)
Q Consensus 34 ~~~~~~~~~~l~~~g~~~~v~~--~~~~~-~-~~l~~~----~~dgiii~GG~~~ 80 (229)
|+....+..+|++.|+++.... .|+.. . +.+... ++|.||.+||.+-
T Consensus 20 D~n~~~l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~ 74 (164)
T 2is8_A 20 DTTHLAIREVLAGGPFEVAAYELVPDEPPMIKKVLRLWADREGLDLILTNGGTGL 74 (164)
T ss_dssp CCHHHHHHHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSS
T ss_pred cchHHHHHHHHHHCCCeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCC
Confidence 5566778999999998876332 23211 1 122221 5899999999763
No 185
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=78.30 E-value=9.8 Score=29.91 Aligned_cols=78 Identities=19% Similarity=0.272 Sum_probs=42.6
Q ss_pred CceEEEEECC--Cchh----HHHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCCCCCCC-CcchHHHH
Q 027062 24 KNPIIVIDNY--DSFT----YNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGPGAPQ-DSGISLQT 90 (229)
Q Consensus 24 ~~~ilvid~~--~~~~----~~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG~~~~~-~~~~~~~~ 90 (229)
+.+|.||-.. +.|. ..+.+.+++.|+.+.+........ +.+...++||||+.+...... .....++.
T Consensus 15 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~ 94 (298)
T 3tb6_A 15 NKTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNIGYYLN 94 (298)
T ss_dssp CCEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHHHHHH
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEecccccccCCcHHHHHH
Confidence 3677777432 2333 335667778899999887542211 122334799999987643322 12233333
Q ss_pred HHHhCCCCcEEEE
Q 027062 91 VLELGPTVPLFGV 103 (229)
Q Consensus 91 i~~~~~~~PvlGI 103 (229)
+.+. ++|+.-+
T Consensus 95 ~~~~--~iPvV~~ 105 (298)
T 3tb6_A 95 LEKN--GIPFAMI 105 (298)
T ss_dssp HHHT--TCCEEEE
T ss_pred HHhc--CCCEEEE
Confidence 3332 4665544
No 186
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=78.03 E-value=3.1 Score=33.21 Aligned_cols=64 Identities=14% Similarity=0.105 Sum_probs=39.0
Q ss_pred HHHHHHHHHcCCEEEEEeCC----cc--CHHHHhccCCCEEEECCCCCCCCC-------c----chHHHHHHHh-CCCCc
Q 027062 38 YNLCQYMGELGYHFEVYRND----EL--TVEELKRKNPRGVLISPGPGAPQD-------S----GISLQTVLEL-GPTVP 99 (229)
Q Consensus 38 ~~~~~~l~~~g~~~~v~~~~----~~--~~~~l~~~~~dgiii~GG~~~~~~-------~----~~~~~~i~~~-~~~~P 99 (229)
..+.++|+..++++++++.. .. ..++|. +||.||+.+-+..... . ....+.++++ .++..
T Consensus 43 ~~l~~aL~~~~~~v~~~~~~~~~~~fp~~~~~L~--~yDvIIl~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~~GGg 120 (256)
T 2gk3_A 43 TWLLECLRKGGVDIDYMPAHTVQIAFPESIDELN--RYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVKNGGG 120 (256)
T ss_dssp HHHHHHHHHTTCEEEEECHHHHHHCCCCSHHHHH--TCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHHTTCE
T ss_pred HHHHHHHHhcCceEEEEecccchhhCCcChhHHh--cCCEEEEeCCchhhcccccccccccccChHHHHHHHHHHHhCCE
Confidence 46888999999999988421 12 234555 6799999875432100 0 2223444432 34788
Q ss_pred EEEE
Q 027062 100 LFGV 103 (229)
Q Consensus 100 vlGI 103 (229)
+++|
T Consensus 121 ll~i 124 (256)
T 2gk3_A 121 LLMI 124 (256)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9998
No 187
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=76.79 E-value=2.6 Score=31.63 Aligned_cols=79 Identities=14% Similarity=0.243 Sum_probs=46.0
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEE-EEeCCccCHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCCCcEE
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFE-VYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF 101 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~-v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~-~~~~~i~~~~~~~Pvl 101 (229)
+++|+|+|........+...|+..|+++. .........+.+....+|.||+-= ..+...+ .+.+.+++... .|++
T Consensus 13 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~~~~dlvi~D~--~~p~~~g~~~~~~l~~~~~-~pii 89 (205)
T 1s8n_A 13 PRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKPDLVIMDV--KMPRRDGIDAASEIASKRI-APIV 89 (205)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEES--SCSSSCHHHHHHHHHHTTC-SCEE
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCEEEEeC--CCCCCChHHHHHHHHhcCC-CCEE
Confidence 35899999755566778888988999876 343221112223334688887732 1122222 34555655433 4887
Q ss_pred EEeh
Q 027062 102 GVCM 105 (229)
Q Consensus 102 GIC~ 105 (229)
-+.-
T Consensus 90 ~lt~ 93 (205)
T 1s8n_A 90 VLTA 93 (205)
T ss_dssp EEEE
T ss_pred EEec
Confidence 7653
No 188
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=76.63 E-value=7.1 Score=26.55 Aligned_cols=80 Identities=14% Similarity=0.209 Sum_probs=44.9
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCE-EEEEeCCccCHHHHhcc-CCCEEEECCCCCCCCCcc-hHHHHHHHh--CCC
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYH-FEVYRNDELTVEELKRK-NPRGVLISPGPGAPQDSG-ISLQTVLEL--GPT 97 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~-~~v~~~~~~~~~~l~~~-~~dgiii~GG~~~~~~~~-~~~~~i~~~--~~~ 97 (229)
.+++|+|+|........+.+.|++.|+. +..........+.+... .+|.|++- ...+...+ .+++.+++. ...
T Consensus 4 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~~dlvi~D--~~~p~~~g~~~~~~lr~~~~~~~ 81 (129)
T 3h1g_A 4 GSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITD--WNMPEMNGLDLVKKVRSDSRFKE 81 (129)
T ss_dssp --CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHCTTCCEEEEC--SCCSSSCHHHHHHHHHTSTTCTT
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhCCCCCEEEEe--CCCCCCCHHHHHHHHHhcCCCCC
Confidence 3578999997555667788889999986 43332211111223322 57877662 12222222 355666653 256
Q ss_pred CcEEEEe
Q 027062 98 VPLFGVC 104 (229)
Q Consensus 98 ~PvlGIC 104 (229)
.|++-+.
T Consensus 82 ~pii~~s 88 (129)
T 3h1g_A 82 IPIIMIT 88 (129)
T ss_dssp CCEEEEE
T ss_pred CeEEEEe
Confidence 8988876
No 189
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=76.58 E-value=7 Score=30.63 Aligned_cols=58 Identities=14% Similarity=0.202 Sum_probs=34.7
Q ss_pred cCCCceEEEEEC--CCchhH----HHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCCC
Q 027062 21 KNNKNPIIVIDN--YDSFTY----NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGP 78 (229)
Q Consensus 21 ~~~~~~ilvid~--~~~~~~----~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG~ 78 (229)
++.+.+|.||-. .+.|.. .+.+.+++.|+.+.+...+.... +.+...++||||+.+..
T Consensus 4 ~~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 73 (276)
T 3jy6_A 4 TQSSKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFS 73 (276)
T ss_dssp -CCCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSC
T ss_pred CCCCcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCC
Confidence 344566777743 223433 35566777899999887642211 12333479999998754
No 190
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=76.43 E-value=4.1 Score=30.23 Aligned_cols=55 Identities=15% Similarity=0.146 Sum_probs=30.5
Q ss_pred ceEEEEEC---------CCchhHHHHHH----HHHcCCEEEEEe--CCccC-H-HHHhcc---CCCEEEECCCCC
Q 027062 25 NPIIVIDN---------YDSFTYNLCQY----MGELGYHFEVYR--NDELT-V-EELKRK---NPRGVLISPGPG 79 (229)
Q Consensus 25 ~~ilvid~---------~~~~~~~~~~~----l~~~g~~~~v~~--~~~~~-~-~~l~~~---~~dgiii~GG~~ 79 (229)
+++.||-- +|+....+.++ |++.|+++..+. .|+.. . +.+.+. ++|.||.+||-+
T Consensus 6 ~~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~~DlVittGG~g 80 (167)
T 2g2c_A 6 IKSAIIVVSDRISTGTRENKALPLLQRLMSDELQDYSYELISEVVVPEGYDTVVEAIATALKQGARFIITAGGTG 80 (167)
T ss_dssp EEEEEEEECHHHHHTSSCCCHHHHHHHHHCC----CEEEEEEEEEECSSHHHHHHHHHHHHHTTCSEEEEESCCS
T ss_pred cEEEEEEECCcccCCceeccHHHHHHHhHHhHHHHCCCEEeEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 56666632 34555678888 999998775332 23211 1 222221 489999999976
No 191
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=76.24 E-value=2.9 Score=28.86 Aligned_cols=34 Identities=12% Similarity=0.065 Sum_probs=25.3
Q ss_pred CCCceEEEEECCCchhHHHHHHHHHcCCEEEEEe
Q 027062 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYR 55 (229)
Q Consensus 22 ~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~ 55 (229)
...++|+|+|........+.+.|+..|+++....
T Consensus 5 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~ 38 (136)
T 1dcf_A 5 FTGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVS 38 (136)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEES
T ss_pred cCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeC
Confidence 3467899999755566778888988899876443
No 192
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=76.03 E-value=1.7 Score=37.22 Aligned_cols=77 Identities=13% Similarity=0.158 Sum_probs=47.3
Q ss_pred CceEEEEECCCch-----hHHHHHHHHHc--CCEEEEEeCC------c-----------------cCHHHHhccCCCEEE
Q 027062 24 KNPIIVIDNYDSF-----TYNLCQYMGEL--GYHFEVYRND------E-----------------LTVEELKRKNPRGVL 73 (229)
Q Consensus 24 ~~~ilvid~~~~~-----~~~~~~~l~~~--g~~~~v~~~~------~-----------------~~~~~l~~~~~dgii 73 (229)
.++|+||-+...- ...+.++|++. |+++.+-... . ...+++. .++|.+|
T Consensus 41 ~k~V~II~n~~~~~~~~~~~~l~~~L~~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~DlVI 119 (388)
T 3afo_A 41 LQNVYITKKPWTPSTREAMVEFITHLHESYPEVNVIVQPDVAEEISQDFKSPLENDPNRPHILYTGPEQDIV-NRTDLLV 119 (388)
T ss_dssp CCEEEEEECTTCHHHHHHHHHHHHHHHHHCTTCEEECCHHHHHHHHTTCCSCGGGCTTSCEEEEECCHHHHH-HHCSEEE
T ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCeEEEEeCchhhhhhhhccccccccccccccccccchhhcc-cCCCEEE
Confidence 4579999775432 24577888887 7776543210 0 0111221 2579999
Q ss_pred ECCCCCCCCCcchHHHHHHHhC-CCC-cEEEEehhH
Q 027062 74 ISPGPGAPQDSGISLQTVLELG-PTV-PLFGVCMGL 107 (229)
Q Consensus 74 i~GG~~~~~~~~~~~~~i~~~~-~~~-PvlGIC~G~ 107 (229)
..||.|. ++...+.+. .++ ||+||=.|.
T Consensus 120 vlGGDGT------lL~aa~~~~~~~vpPiLGIN~G~ 149 (388)
T 3afo_A 120 TLGGDGT------ILHGVSMFGNTQVPPVLAFALGT 149 (388)
T ss_dssp EEESHHH------HHHHHHTTTTSCCCCEEEEECSS
T ss_pred EEeCcHH------HHHHHHHhcccCCCeEEEEECCC
Confidence 9999653 556666553 467 899998873
No 193
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=74.91 E-value=6.1 Score=32.22 Aligned_cols=89 Identities=11% Similarity=0.091 Sum_probs=50.6
Q ss_pred CCceEEEEECCCc-------hhHHHHHHHHHcCCEEEEEeCCccC-H----HHHhccCCCEEEECCCCCCCCCcchHHHH
Q 027062 23 NKNPIIVIDNYDS-------FTYNLCQYMGELGYHFEVYRNDELT-V----EELKRKNPRGVLISPGPGAPQDSGISLQT 90 (229)
Q Consensus 23 ~~~~ilvid~~~~-------~~~~~~~~l~~~g~~~~v~~~~~~~-~----~~l~~~~~dgiii~GG~~~~~~~~~~~~~ 90 (229)
..++++||-|..+ ....+.++|++.|+++.+....... . .++.. ++|.||+.||.|+.++ .+..
T Consensus 7 ~m~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~~-~~d~vv~~GGDGTl~~---v~~~ 82 (304)
T 3s40_A 7 KFEKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTKEQGDATKYCQEFAS-KVDLIIVFGGDGTVFE---CTNG 82 (304)
T ss_dssp SCSSEEEEECTTCSSSCHHHHHHHHHHHHHHHCSEEEEEECCSTTHHHHHHHHHTT-TCSEEEEEECHHHHHH---HHHH
T ss_pred CCCEEEEEECcccCCCchHHHHHHHHHHHHHcCCeEEEEEccCcchHHHHHHHhhc-CCCEEEEEccchHHHH---HHHH
Confidence 3567877766432 1234677788899999887643211 1 12222 6899999999764321 1111
Q ss_pred HHHhCCCCcEEEEehhHH-HHHHHhC
Q 027062 91 VLELGPTVPLFGVCMGLQ-CIGEAFG 115 (229)
Q Consensus 91 i~~~~~~~PvlGIC~G~Q-lla~alG 115 (229)
+.....+.|+..|=.|-- .++..+|
T Consensus 83 l~~~~~~~~l~iiP~Gt~N~~ar~lg 108 (304)
T 3s40_A 83 LAPLEIRPTLAIIPGGTCNDFSRTLG 108 (304)
T ss_dssp HTTCSSCCEEEEEECSSCCHHHHHTT
T ss_pred HhhCCCCCcEEEecCCcHHHHHHHcC
Confidence 111124567766666654 4555555
No 194
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=74.87 E-value=28 Score=27.22 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=25.1
Q ss_pred HHHHHHHHcCCEEEEEeCCccC------HHHHhccCCCEEEECCCC
Q 027062 39 NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGP 78 (229)
Q Consensus 39 ~~~~~l~~~g~~~~v~~~~~~~------~~~l~~~~~dgiii~GG~ 78 (229)
.+.+.+++.|+++.+...+... .+.+...++||||+.+..
T Consensus 29 gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 74 (287)
T 3bbl_A 29 SMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRSGNVDGFVLSSIN 74 (287)
T ss_dssp HHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHTTCCSEEEECSCC
T ss_pred HHHHHHHHcCCEEEEEeCCCchHHHHHHHHHHHcCCCCEEEEeecC
Confidence 3556677889998876533211 123334479999998743
No 195
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=74.80 E-value=2.9 Score=31.93 Aligned_cols=79 Identities=16% Similarity=0.241 Sum_probs=47.9
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCc-chHHHHHHHhCCCCcEEEE
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLFGV 103 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~-~~~~~~i~~~~~~~PvlGI 103 (229)
++|+|+|........+...|+..|+++..........+.+....+|.+|+--. .+... -.+++.+++. ...|++-+
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~--l~~~~g~~~~~~l~~~-~~~~ii~l 81 (230)
T 2oqr_A 5 TSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLM--LPGMSGTDVCKQLRAR-SSVPVIMV 81 (230)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHCCSEEEEESS--CSSSCHHHHHHHHHHH-CSCSEEEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhccCCCEEEEECC--CCCCCHHHHHHHHHcC-CCCCEEEE
Confidence 68999997555667788889989998765432211122233346888877322 12222 2345666654 56898877
Q ss_pred ehh
Q 027062 104 CMG 106 (229)
Q Consensus 104 C~G 106 (229)
.--
T Consensus 82 t~~ 84 (230)
T 2oqr_A 82 TAR 84 (230)
T ss_dssp ECC
T ss_pred eCC
Confidence 643
No 196
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=74.76 E-value=13 Score=29.67 Aligned_cols=76 Identities=17% Similarity=0.092 Sum_probs=41.3
Q ss_pred CCceEEEEEC--CCchh----HHHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCCCCCCCCcchHHHH
Q 027062 23 NKNPIIVIDN--YDSFT----YNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGPGAPQDSGISLQT 90 (229)
Q Consensus 23 ~~~~ilvid~--~~~~~----~~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG~~~~~~~~~~~~~ 90 (229)
.+..|.||-. .+.|. ..+.+.+++.|+.+.+........ +.+...++||||+.+.... + ...++.
T Consensus 14 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~--~-~~~~~~ 90 (303)
T 3kke_A 14 RSGTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRREDF--D-DDMLAA 90 (303)
T ss_dssp ---CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCTTC--C-HHHHHH
T ss_pred CCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCC--c-HHHHHH
Confidence 3455766632 22343 335667778899999887653222 1233447999999875432 1 113333
Q ss_pred HHHhCCCCcEEEEe
Q 027062 91 VLELGPTVPLFGVC 104 (229)
Q Consensus 91 i~~~~~~~PvlGIC 104 (229)
+.+ ++|+.-+.
T Consensus 91 l~~---~iPvV~i~ 101 (303)
T 3kke_A 91 VLE---GVPAVTIN 101 (303)
T ss_dssp HHT---TSCEEEES
T ss_pred HhC---CCCEEEEC
Confidence 333 57776553
No 197
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=74.70 E-value=9.3 Score=28.75 Aligned_cols=36 Identities=19% Similarity=0.199 Sum_probs=22.6
Q ss_pred ceEEEEECC---CchhHHHHHH-----HHHcCCEEEEEeCCccC
Q 027062 25 NPIIVIDNY---DSFTYNLCQY-----MGELGYHFEVYRNDELT 60 (229)
Q Consensus 25 ~~ilvid~~---~~~~~~~~~~-----l~~~g~~~~v~~~~~~~ 60 (229)
|+|++|-.- .+++..++++ +++.|.+++++...+.+
T Consensus 3 mkilii~gS~r~~g~t~~la~~i~~~~l~~~g~~v~~~dl~~~~ 46 (197)
T 2vzf_A 3 YSIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHVIDLD 46 (197)
T ss_dssp EEEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGGGSC
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHHHHHHCCCeEEEEEccccC
Confidence 578888653 2555555444 45558899888754443
No 198
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=74.69 E-value=18 Score=27.92 Aligned_cols=76 Identities=14% Similarity=0.215 Sum_probs=47.6
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCcc--CHHHHhcc-CCCEEEECCCCCCCCCcchHHHHHHHhCCCCc
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL--TVEELKRK-NPRGVLISPGPGAPQDSGISLQTVLELGPTVP 99 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~--~~~~l~~~-~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~P 99 (229)
.+.+|++|.........+.++.+..|.....-++-.. +-..+... .+|.++++. +..+...+.+...+ ++|
T Consensus 67 ~~~~iLfVgTk~~~~~~V~~~A~~~g~~~v~~rwlgG~LTN~~~~~f~~PdlliV~D----p~~e~~ai~EA~~l--~IP 140 (208)
T 1vi6_A 67 EPSKILLVAARQYAHKPVQMFSKVVGSDYIVGRFIPGTLTNPMLSEYREPEVVFVND----PAIDKQAVSEATAV--GIP 140 (208)
T ss_dssp CGGGEEEEECSGGGHHHHHHHHHHHCCEEEESSCCTTTTTCTTSTTCCCCSEEEESC----TTTTHHHHHHHHHT--TCC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHhCCeeecCEECCCcccChhhHhhCCCCEEEEEC----CCcchhHHHHHHHh--CCC
Confidence 4567999987655566677777888888776554211 10112222 578898873 33344444555555 599
Q ss_pred EEEEe
Q 027062 100 LFGVC 104 (229)
Q Consensus 100 vlGIC 104 (229)
+.|+|
T Consensus 141 vIalv 145 (208)
T 1vi6_A 141 VVALC 145 (208)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99999
No 199
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=74.68 E-value=10 Score=27.64 Aligned_cols=53 Identities=13% Similarity=0.201 Sum_probs=30.9
Q ss_pred ceEEEEEC-CCchhHH----HHHHHHHcCCEEEEEeCCccCHHHHhc--cCCCEEEECCCC
Q 027062 25 NPIIVIDN-YDSFTYN----LCQYMGELGYHFEVYRNDELTVEELKR--KNPRGVLISPGP 78 (229)
Q Consensus 25 ~~ilvid~-~~~~~~~----~~~~l~~~g~~~~v~~~~~~~~~~l~~--~~~dgiii~GG~ 78 (229)
|+|+|+=. ..+.+.. +.+.+++.|+++.++...+.+..++.. .++|+||| |.|
T Consensus 1 Mkv~IvY~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~-Gsp 60 (161)
T 3hly_A 1 MSVLIGYLSDYGYSDRLSQAIGRGLVKTGVAVEMVDLRAVDPQELIEAVSSARGIVL-GTP 60 (161)
T ss_dssp -CEEEEECTTSTTHHHHHHHHHHHHHHTTCCEEEEETTTCCHHHHHHHHHHCSEEEE-ECC
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhCCEEEE-EcC
Confidence 46766632 2234443 555566779999888876555555431 15688877 444
No 200
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=74.53 E-value=7.2 Score=32.97 Aligned_cols=78 Identities=21% Similarity=0.227 Sum_probs=47.4
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCCCcEEEE
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV 103 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~-~~~~~i~~~~~~~PvlGI 103 (229)
++|+|||........+...|+..|+++..........+.+....+|.||+== ..+...+ .+++.+++.....||+-+
T Consensus 1 m~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~~DlvllD~--~mp~~dG~ell~~lr~~~~~~pvIvl 78 (387)
T 1ny5_A 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKHFNVVLLDL--LLPDVNGLEILKWIKERSPETEVIVI 78 (387)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHHSCCSEEEEES--BCSSSBHHHHHHHHHHHCTTSEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeC--CCCCCCHHHHHHHHHhhCCCCcEEEE
Confidence 4799999755566778888988899887554321122233344688877621 1122222 345666666666787766
Q ss_pred e
Q 027062 104 C 104 (229)
Q Consensus 104 C 104 (229)
.
T Consensus 79 T 79 (387)
T 1ny5_A 79 T 79 (387)
T ss_dssp E
T ss_pred e
Confidence 4
No 201
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=74.28 E-value=13 Score=29.68 Aligned_cols=55 Identities=13% Similarity=-0.035 Sum_probs=32.7
Q ss_pred CceEEEEEC--CCchh----HHHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCCC
Q 027062 24 KNPIIVIDN--YDSFT----YNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGP 78 (229)
Q Consensus 24 ~~~ilvid~--~~~~~----~~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG~ 78 (229)
+.+|.||-. .+.|. ..+.+.+++.|+++.+........ +.+...++||||+.+..
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~ 68 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYN 68 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 345666633 22333 346677788899999887642211 12233479999998753
No 202
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=73.88 E-value=9.4 Score=30.72 Aligned_cols=79 Identities=15% Similarity=0.211 Sum_probs=49.3
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEE-EEeCCccCHHHHhccCCCEEEECCCCCCC-C-CcchHHHHHHHhCCCCc
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFE-VYRNDELTVEELKRKNPRGVLISPGPGAP-Q-DSGISLQTVLELGPTVP 99 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~-v~~~~~~~~~~l~~~~~dgiii~GG~~~~-~-~~~~~~~~i~~~~~~~P 99 (229)
...+|+|+|-.......+...|+..|+++. .........+.+....||.||+== ..| . +--...+.+++.. .+|
T Consensus 159 l~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~~~~dlvl~D~--~MPd~mdG~e~~~~ir~~~-~~p 235 (286)
T 3n0r_A 159 LATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTRRTPGLVLADI--QLADGSSGIDAVKDILGRM-DVP 235 (286)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHCCCSEEEEES--CCTTSCCTTTTTHHHHHHT-TCC
T ss_pred CCCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHHhCCCCEEEEcC--CCCCCCCHHHHHHHHHhcC-CCC
Confidence 356899999644466778889999999997 555332223334445788877621 112 1 1123456666655 799
Q ss_pred EEEEe
Q 027062 100 LFGVC 104 (229)
Q Consensus 100 vlGIC 104 (229)
|+.+-
T Consensus 236 iI~lT 240 (286)
T 3n0r_A 236 VIFIT 240 (286)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 98875
No 203
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=73.69 E-value=9.1 Score=30.11 Aligned_cols=55 Identities=11% Similarity=0.033 Sum_probs=32.5
Q ss_pred CCceEEEEECC--Cchh----HHHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCC
Q 027062 23 NKNPIIVIDNY--DSFT----YNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (229)
Q Consensus 23 ~~~~ilvid~~--~~~~----~~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG 77 (229)
++.+|.|+-.. +.|. ..+.+.+++.|+++.+...+.... +.+...++||||+.+.
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 73 (293)
T 3l6u_A 7 KRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTL 73 (293)
T ss_dssp --CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred CCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 45567776432 2233 335666778899999887642211 1233347999999864
No 204
>1ehs_A STB, heat-stable enterotoxin B; disulfide; NMR {Escherichia coli} SCOP: g.2.1.1
Probab=73.35 E-value=0.41 Score=26.52 Aligned_cols=17 Identities=35% Similarity=0.520 Sum_probs=13.1
Q ss_pred cEEEEehhHHHHHHHhC
Q 027062 99 PLFGVCMGLQCIGEAFG 115 (229)
Q Consensus 99 PvlGIC~G~Qlla~alG 115 (229)
-..|-|+|.|+|..+-|
T Consensus 31 gtagacfgaqimvaakg 47 (48)
T 1ehs_A 31 GTAGACFGAQIMVAAKG 47 (48)
T ss_dssp SSCCTTTTTHHHHTTTT
T ss_pred CccccccchhHhhhccc
Confidence 35688999999976544
No 205
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=72.99 E-value=11 Score=30.57 Aligned_cols=52 Identities=13% Similarity=0.052 Sum_probs=35.5
Q ss_pred CceEEEEECCCch--------hHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEEC
Q 027062 24 KNPIIVIDNYDSF--------TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLIS 75 (229)
Q Consensus 24 ~~~ilvid~~~~~--------~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~ 75 (229)
+++|+||--+.+- ...+.++|++.|+++..+...+.....+...++|.++..
T Consensus 13 ~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~~i~~~~~~~~~l~~~~~D~v~~~ 72 (317)
T 4eg0_A 13 FGKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLSALKDEGFVRAFNA 72 (317)
T ss_dssp GCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCTTHHHHTTCCEEEEC
T ss_pred cceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEEEEeCCCchHHHhhhcCCCEEEEc
Confidence 5689999754432 245778899999999988754333345554578887753
No 206
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=72.11 E-value=5 Score=31.67 Aligned_cols=57 Identities=11% Similarity=0.056 Sum_probs=34.5
Q ss_pred cCCCceEEEEECC--Cchh----HHHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCC
Q 027062 21 KNNKNPIIVIDNY--DSFT----YNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (229)
Q Consensus 21 ~~~~~~ilvid~~--~~~~----~~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG 77 (229)
+..+.+|.+|-.. +.|. ..+.+.+++.|+++.+........ +.+...++||||+.+.
T Consensus 2 s~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 70 (291)
T 3l49_A 2 SLEGKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLG 70 (291)
T ss_dssp CCTTCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESS
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 3445677777432 2232 335667778899999887542211 1223347999999864
No 207
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=71.79 E-value=10 Score=30.09 Aligned_cols=54 Identities=13% Similarity=0.174 Sum_probs=32.9
Q ss_pred CceEEEEECC--Cchh----HHHHHHHHHcCCEEEEEeCCcc-C-------HHHHhccCCCEEEECCC
Q 027062 24 KNPIIVIDNY--DSFT----YNLCQYMGELGYHFEVYRNDEL-T-------VEELKRKNPRGVLISPG 77 (229)
Q Consensus 24 ~~~ilvid~~--~~~~----~~~~~~l~~~g~~~~v~~~~~~-~-------~~~l~~~~~dgiii~GG 77 (229)
+.+|.+|-.. +.|. ..+.+.+++.|+++.+...+.. + .+.+...++||||+.+.
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 70 (297)
T 3rot_A 3 RDKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIP 70 (297)
T ss_dssp CCEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCC
T ss_pred eEEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4567777442 2333 3356667788999998874311 1 12233347999999764
No 208
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=70.95 E-value=6.8 Score=27.22 Aligned_cols=78 Identities=14% Similarity=0.147 Sum_probs=42.0
Q ss_pred ceEEEEECCCchhHHHHHHHHH--cCCEEEEEeCCc-cCHHHHhccCCCEEEECCCCCCCCCc-chHHHHHHHhCCCCcE
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGE--LGYHFEVYRNDE-LTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPL 100 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~--~g~~~~v~~~~~-~~~~~l~~~~~dgiii~GG~~~~~~~-~~~~~~i~~~~~~~Pv 100 (229)
++|+|+|........+...|+. .|+.+...-.+. .....+....+|.+|+-=. .+... -.+++.+++.....|+
T Consensus 3 ~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~~~~~dlvllD~~--lp~~~g~~l~~~l~~~~~~~~i 80 (141)
T 3cu5_A 3 LRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALKHPPNVLLTDVR--MPRMDGIELVDNILKLYPDCSV 80 (141)
T ss_dssp CEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTTSCCSEEEEESC--CSSSCHHHHHHHHHHHCTTCEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhhCCCCcE
Confidence 5799999754455567777753 566654222221 1112233336887776321 12222 2456666666567888
Q ss_pred EEEe
Q 027062 101 FGVC 104 (229)
Q Consensus 101 lGIC 104 (229)
+-+.
T Consensus 81 i~ls 84 (141)
T 3cu5_A 81 IFMS 84 (141)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 7664
No 209
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=70.66 E-value=3.5 Score=28.84 Aligned_cols=82 Identities=11% Similarity=0.176 Sum_probs=44.9
Q ss_pred ccCCCceEEEEECCCchhHHHHHHHHHc-CCEEE-EEeCCccCHHHHhcc-CCCEEEECCCCCCCC-CcchHHHHHHHhC
Q 027062 20 SKNNKNPIIVIDNYDSFTYNLCQYMGEL-GYHFE-VYRNDELTVEELKRK-NPRGVLISPGPGAPQ-DSGISLQTVLELG 95 (229)
Q Consensus 20 ~~~~~~~ilvid~~~~~~~~~~~~l~~~-g~~~~-v~~~~~~~~~~l~~~-~~dgiii~GG~~~~~-~~~~~~~~i~~~~ 95 (229)
..+...+|+|+|........+.+.|+.. |+.+. .........+.+... .+|.||+-=. .+. +.-.+++.+++..
T Consensus 9 ~~~~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~dlvilD~~--l~~~~g~~~~~~lr~~~ 86 (145)
T 3kyj_B 9 HHGSPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQPNVDLILLDIE--MPVMDGMEFLRHAKLKT 86 (145)
T ss_dssp --CCSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHCTTCCEEEECTT--SCCCTTCHHHHHHHHHC
T ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhcCCCCCEEEEeCC--CCCCCHHHHHHHHHhcC
Confidence 4556778999997555667788888887 77654 333211112334444 6888887321 111 2224556666543
Q ss_pred CCCcEEEEe
Q 027062 96 PTVPLFGVC 104 (229)
Q Consensus 96 ~~~PvlGIC 104 (229)
. .|++-+.
T Consensus 87 ~-~~iiil~ 94 (145)
T 3kyj_B 87 R-AKICMLS 94 (145)
T ss_dssp C-CEEC-CB
T ss_pred C-CCeEEEE
Confidence 3 5655544
No 210
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=70.46 E-value=4.5 Score=27.86 Aligned_cols=79 Identities=16% Similarity=0.287 Sum_probs=44.4
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCE-EEEEeCCccCHHHHhc-----cCCCEEEECCCCCCCCCcc-hHHHHHHH-hC
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYH-FEVYRNDELTVEELKR-----KNPRGVLISPGPGAPQDSG-ISLQTVLE-LG 95 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~-~~v~~~~~~~~~~l~~-----~~~dgiii~GG~~~~~~~~-~~~~~i~~-~~ 95 (229)
.++|+|+|........+...|+..|+. +..........+.+.. ..+|.+++= -..+...+ .+.+.+++ ..
T Consensus 2 ~~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~~~dlvllD--~~mp~~~G~~~~~~lr~~~~ 79 (133)
T 2r25_B 2 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMD--VQMPKVDGLLSTKMIRRDLG 79 (133)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEEC--SCCSSSCHHHHHHHHHHHSC
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCCCCCEEEEe--CCCCCCChHHHHHHHHhhcC
Confidence 468999997555667788888888875 4433321111222322 357877762 11222223 34566665 34
Q ss_pred CCCcEEEEe
Q 027062 96 PTVPLFGVC 104 (229)
Q Consensus 96 ~~~PvlGIC 104 (229)
...||+-+.
T Consensus 80 ~~~~ii~lt 88 (133)
T 2r25_B 80 YTSPIVALT 88 (133)
T ss_dssp CCSCEEEEE
T ss_pred CCCCEEEEE
Confidence 467887764
No 211
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=70.36 E-value=13 Score=29.26 Aligned_cols=76 Identities=12% Similarity=-0.005 Sum_probs=40.6
Q ss_pred CCceEEEEEC--CCchhH----HHHHHHHHcCCEEEEEeCCccC---------HHHHhccCCCEEEECCCCCCCCCcchH
Q 027062 23 NKNPIIVIDN--YDSFTY----NLCQYMGELGYHFEVYRNDELT---------VEELKRKNPRGVLISPGPGAPQDSGIS 87 (229)
Q Consensus 23 ~~~~ilvid~--~~~~~~----~~~~~l~~~g~~~~v~~~~~~~---------~~~l~~~~~dgiii~GG~~~~~~~~~~ 87 (229)
.+.+|.+|-. .+.|.. .+.+.+++.|+++.+...+... .+.+...++||||+.+.... ...
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~----~~~ 82 (290)
T 2rgy_A 7 QLGIIGLFVPTFFGSYYGTILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIGRDCDGVVVISHDLH----DED 82 (290)
T ss_dssp -CCEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC----HHH
T ss_pred CCCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHhcCccEEEEecCCCC----HHH
Confidence 3456777732 223333 3556677889999877543211 11222347999999875322 223
Q ss_pred HHHHHHhCCCCcEEEEe
Q 027062 88 LQTVLELGPTVPLFGVC 104 (229)
Q Consensus 88 ~~~i~~~~~~~PvlGIC 104 (229)
++.+.+ .++|+.-+.
T Consensus 83 ~~~l~~--~~iPvV~~~ 97 (290)
T 2rgy_A 83 LDELHR--MHPKMVFLN 97 (290)
T ss_dssp HHHHHH--HCSSEEEES
T ss_pred HHHHhh--cCCCEEEEc
Confidence 333333 247766553
No 212
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=70.28 E-value=5.1 Score=28.15 Aligned_cols=80 Identities=11% Similarity=0.189 Sum_probs=44.8
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCc--cCHHHHhc-------cCCCEEEECCCCCCCCCcc-hHHHHHH
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDE--LTVEELKR-------KNPRGVLISPGPGAPQDSG-ISLQTVL 92 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~--~~~~~l~~-------~~~dgiii~GG~~~~~~~~-~~~~~i~ 92 (229)
.+++|+|+|........+...|+..|....+....+ ...+.+.. ..+|.+|+-= ..+...+ .+++.++
T Consensus 7 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~--~lp~~~g~~l~~~l~ 84 (149)
T 1i3c_A 7 PPKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDL--NLPKKDGREVLAEIK 84 (149)
T ss_dssp CCEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECS--CCSSSCHHHHHHHHH
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeC--CCCCCcHHHHHHHHH
Confidence 357899999755566778888888887433333221 11122332 2578777621 1122222 3556666
Q ss_pred HhC--CCCcEEEEe
Q 027062 93 ELG--PTVPLFGVC 104 (229)
Q Consensus 93 ~~~--~~~PvlGIC 104 (229)
+.. ..+|++-+.
T Consensus 85 ~~~~~~~~piiils 98 (149)
T 1i3c_A 85 QNPDLKRIPVVVLT 98 (149)
T ss_dssp HCTTTTTSCEEEEE
T ss_pred hCcCcCCCeEEEEE
Confidence 542 468888765
No 213
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=70.18 E-value=15 Score=29.04 Aligned_cols=56 Identities=14% Similarity=0.172 Sum_probs=31.9
Q ss_pred CCCceEEEEE--CCCchhH----HHHHHHHHcCCEEEEEeCCccC------HHHHhccCCCEEEECCC
Q 027062 22 NNKNPIIVID--NYDSFTY----NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPG 77 (229)
Q Consensus 22 ~~~~~ilvid--~~~~~~~----~~~~~l~~~g~~~~v~~~~~~~------~~~l~~~~~dgiii~GG 77 (229)
+.+.+|.||- ..+.|.. .+.+.+++.|+++.+....... .+.+...++||||+.+.
T Consensus 14 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 81 (289)
T 2fep_A 14 KKTTTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGG 81 (289)
T ss_dssp --CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCCCeEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecC
Confidence 3445666663 2233433 3556677889999887653211 11233347999999875
No 214
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=69.64 E-value=27 Score=28.18 Aligned_cols=75 Identities=13% Similarity=0.168 Sum_probs=40.6
Q ss_pred CCceEEEEEC--CCchh----HHHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCCCCCCCCcchHHHH
Q 027062 23 NKNPIIVIDN--YDSFT----YNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGPGAPQDSGISLQT 90 (229)
Q Consensus 23 ~~~~ilvid~--~~~~~----~~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG~~~~~~~~~~~~~ 90 (229)
.+..|.++-. .+.|. ..+.+.+++.|+.+.+...+.... +.+...++||||+.+.... ......
T Consensus 61 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~----~~~~~~ 136 (339)
T 3h5o_A 61 KSRTVLVLIPSLANTVFLETLTGIETVLDAAGYQMLIGNSHYDAGQELQLLRAYLQHRPDGVLITGLSHA----EPFERI 136 (339)
T ss_dssp --CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCC----TTHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHcCCCCEEEEeCCCCC----HHHHHH
Confidence 3456777632 22232 346677788899998877542111 1233347999999874321 123333
Q ss_pred HHHhCCCCcEEEE
Q 027062 91 VLELGPTVPLFGV 103 (229)
Q Consensus 91 i~~~~~~~PvlGI 103 (229)
+.+ .++|+.-+
T Consensus 137 l~~--~~iPvV~~ 147 (339)
T 3h5o_A 137 LSQ--HALPVVYM 147 (339)
T ss_dssp HHH--TTCCEEEE
T ss_pred Hhc--CCCCEEEE
Confidence 333 24776654
No 215
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=69.34 E-value=9.2 Score=32.83 Aligned_cols=58 Identities=10% Similarity=0.029 Sum_probs=32.7
Q ss_pred chhHHHHHHHHHcCCEEEEEeCCccCHHH----Hhcc--CCCEEEECCCCCCCCCcchHHHHHHH
Q 027062 35 SFTYNLCQYMGELGYHFEVYRNDELTVEE----LKRK--NPRGVLISPGPGAPQDSGISLQTVLE 93 (229)
Q Consensus 35 ~~~~~~~~~l~~~g~~~~v~~~~~~~~~~----l~~~--~~dgiii~GG~~~~~~~~~~~~~i~~ 93 (229)
++...+..+|++.|+++.....-..+.+. +.+. ++|.||.+||.+- .+.+...+.+.+
T Consensus 204 sn~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~al~~a~~~~DlvittGG~s~-g~~D~t~~al~~ 267 (411)
T 1g8l_A 204 TNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSV-GEADYTKTILEE 267 (411)
T ss_dssp CHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEECSSSCS-SSCSHHHHHHHH
T ss_pred CchHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHhhcCCEEEECCCCCC-CCcccHHHHHHh
Confidence 44567889999999988643211011222 2211 5799999998653 333333333333
No 216
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=68.68 E-value=23 Score=26.64 Aligned_cols=35 Identities=6% Similarity=0.019 Sum_probs=22.3
Q ss_pred CCceEEEEECC-CchhHH----HHHHHHHcCCEEEEEeCC
Q 027062 23 NKNPIIVIDNY-DSFTYN----LCQYMGELGYHFEVYRND 57 (229)
Q Consensus 23 ~~~~ilvid~~-~~~~~~----~~~~l~~~g~~~~v~~~~ 57 (229)
.+|+|+||-.- .+.+.. +.+.+++.|.+++++...
T Consensus 5 ~mmkilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~ 44 (211)
T 1ydg_A 5 APVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVR 44 (211)
T ss_dssp CCCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHhcCCCEEEEEecc
Confidence 45789988642 234444 445556679999888754
No 217
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=68.60 E-value=39 Score=26.29 Aligned_cols=56 Identities=7% Similarity=0.160 Sum_probs=33.6
Q ss_pred CCceEEEEECC-------CchhH----HHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCCC
Q 027062 23 NKNPIIVIDNY-------DSFTY----NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGP 78 (229)
Q Consensus 23 ~~~~ilvid~~-------~~~~~----~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG~ 78 (229)
++.+|.||-.. +.|.. .+.+.+++.|+.+.+...+.... +.+...++||||+.+..
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~ 79 (292)
T 3k4h_A 7 TTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSR 79 (292)
T ss_dssp CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCB
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCC
Confidence 45567777432 33433 35566778899998876542111 11233479999998754
No 218
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=68.58 E-value=11 Score=29.49 Aligned_cols=55 Identities=18% Similarity=0.068 Sum_probs=31.9
Q ss_pred CCceEEEEEC--CCchhH----HHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCC
Q 027062 23 NKNPIIVIDN--YDSFTY----NLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGP 78 (229)
Q Consensus 23 ~~~~ilvid~--~~~~~~----~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~ 78 (229)
++.+|.||-. .+.|.. .+.+.+++.|+.+.+...+... +.....++||||+.+..
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~-~~~~~~~vdgiI~~~~~ 67 (277)
T 3cs3_A 7 QTNIIGVYLADYGGSFYGELLEGIKKGLALFDYEMIVCSGKKSH-LFIPEKMVDGAIILDWT 67 (277)
T ss_dssp CCCEEEEEECSSCTTTHHHHHHHHHHHHHTTTCEEEEEESTTTT-TCCCTTTCSEEEEECTT
T ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHHHHCCCeEEEEeCCCCH-HHHhhccccEEEEecCC
Confidence 4456777732 233433 3556677789999887654211 11111278999998753
No 219
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=68.29 E-value=14 Score=27.97 Aligned_cols=57 Identities=26% Similarity=0.347 Sum_probs=34.0
Q ss_pred CceEEEEECC---------CchhHHHHHHHHH---cCCEEEEEe--CCcc-CH-HHHhc----cCCCEEEECCCCCC
Q 027062 24 KNPIIVIDNY---------DSFTYNLCQYMGE---LGYHFEVYR--NDEL-TV-EELKR----KNPRGVLISPGPGA 80 (229)
Q Consensus 24 ~~~ilvid~~---------~~~~~~~~~~l~~---~g~~~~v~~--~~~~-~~-~~l~~----~~~dgiii~GG~~~ 80 (229)
++++.||--+ |+....+..+|++ .|+++.... .|+. .. +.+.+ .++|.||.+||.+-
T Consensus 14 ~~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVIttGGtg~ 90 (189)
T 1jlj_A 14 QIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWCDEKELNLILTTGGTGF 90 (189)
T ss_dssp CCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSS
T ss_pred CCEEEEEEECCccCCCcccchHHHHHHHHHhchhcCCcEEEEEEEeCCCHHHHHHHHHHHhhcCCCCEEEEcCCCCC
Confidence 4677777433 3445568888988 898876432 2321 11 12222 15899999999763
No 220
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=68.08 E-value=14 Score=25.70 Aligned_cols=35 Identities=14% Similarity=0.227 Sum_probs=24.4
Q ss_pred HHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEEC
Q 027062 39 NLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLIS 75 (229)
Q Consensus 39 ~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~ 75 (229)
.+.+.+++.|+++.++...+.+.+++. ++|+|||.
T Consensus 18 ~ia~~l~~~g~~v~~~~~~~~~~~~l~--~~d~iiig 52 (138)
T 5nul_A 18 LIAKGIIESGKDVNTINVSDVNIDELL--NEDILILG 52 (138)
T ss_dssp HHHHHHHHTTCCCEEEEGGGCCHHHHT--TCSEEEEE
T ss_pred HHHHHHHHCCCeEEEEEhhhCCHHHHh--hCCEEEEE
Confidence 355556677999888887655666666 56888774
No 221
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=67.96 E-value=34 Score=25.25 Aligned_cols=34 Identities=15% Similarity=0.103 Sum_probs=21.1
Q ss_pred ceEEEEEC-CCchhHH----HHHHHHHcCCEEEEEeCCc
Q 027062 25 NPIIVIDN-YDSFTYN----LCQYMGELGYHFEVYRNDE 58 (229)
Q Consensus 25 ~~ilvid~-~~~~~~~----~~~~l~~~g~~~~v~~~~~ 58 (229)
|+|+||-. ..+.+.. +.+.+++.|++++++...+
T Consensus 6 ~kilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~ 44 (200)
T 2a5l_A 6 PYILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPA 44 (200)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCC
T ss_pred ceEEEEEeCCCChHHHHHHHHHHHHhhCCCEEEEEEhhh
Confidence 57888854 2234444 4455566789998877543
No 222
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=67.93 E-value=7.9 Score=29.57 Aligned_cols=46 Identities=15% Similarity=0.125 Sum_probs=27.7
Q ss_pred CchhHHHHHHHHHcCCE--E---EEEeCCccCH-HHHhc----cCCCEEEECCCCC
Q 027062 34 DSFTYNLCQYMGELGYH--F---EVYRNDELTV-EELKR----KNPRGVLISPGPG 79 (229)
Q Consensus 34 ~~~~~~~~~~l~~~g~~--~---~v~~~~~~~~-~~l~~----~~~dgiii~GG~~ 79 (229)
|+....+.++|++.|++ + .+++.+.... +.+.+ .++|.||.+||.+
T Consensus 22 D~n~~~L~~~L~~~G~~~~v~~~~iV~Dd~~~I~~al~~a~~~~~~DlVitTGGtg 77 (195)
T 1di6_A 22 DKGIPALEEWLTSALTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLVLTTGGTG 77 (195)
T ss_dssp CCHHHHHHHHHHHHBCSCEEEEEEEEESCHHHHHHHHHHHHHTSCCSEEEEESCCS
T ss_pred chHHHHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 44556788999999876 2 2344331111 12222 1589999999976
No 223
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=67.65 E-value=8.4 Score=30.39 Aligned_cols=57 Identities=16% Similarity=0.223 Sum_probs=34.1
Q ss_pred CCCceEEEEEC--CCchh----HHHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCCC
Q 027062 22 NNKNPIIVIDN--YDSFT----YNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGP 78 (229)
Q Consensus 22 ~~~~~ilvid~--~~~~~----~~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG~ 78 (229)
+++.+|.|+-. .+.|. ..+.+.+++.|+.+.+...+.... +.+...++||||+.+..
T Consensus 6 ~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 74 (291)
T 3egc_A 6 KRSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSE 74 (291)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCS
T ss_pred CCCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 34456777643 22233 335666778899999887642211 12333479999998764
No 224
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=67.55 E-value=19 Score=28.39 Aligned_cols=57 Identities=11% Similarity=0.194 Sum_probs=33.6
Q ss_pred CCCceEEEEEC-------CCchh----HHHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCCC
Q 027062 22 NNKNPIIVIDN-------YDSFT----YNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGP 78 (229)
Q Consensus 22 ~~~~~ilvid~-------~~~~~----~~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG~ 78 (229)
+.+..|.||-. .+.|. ..+.+.+++.|+.+.+...+.... +.+...++||||+.+..
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~ 78 (295)
T 3hcw_A 5 NQTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSK 78 (295)
T ss_dssp CCSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCC
T ss_pred CCCcEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCcc
Confidence 34556777741 12233 335666777899998876542111 12333479999998754
No 225
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=66.44 E-value=19 Score=27.77 Aligned_cols=54 Identities=11% Similarity=0.089 Sum_probs=32.4
Q ss_pred ceEEEEECC--Cchh----HHHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCCC
Q 027062 25 NPIIVIDNY--DSFT----YNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGP 78 (229)
Q Consensus 25 ~~ilvid~~--~~~~----~~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG~ 78 (229)
.+|.|+-.. +.|. ..+.+.+++.|+++.+...+.... +.+...++||||+.+..
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 68 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARARGYQLLIASSDDQPDSERQLQQLFRARRCDALFVASCL 68 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCC
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCc
Confidence 456666332 2233 335666778899999887652211 12333479999998754
No 226
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=66.36 E-value=13 Score=27.77 Aligned_cols=80 Identities=14% Similarity=0.135 Sum_probs=45.4
Q ss_pred CceEEEEECCCchhHHHHHHHHHcC-CEEEEEeCCc-cCHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCCCcE
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELG-YHFEVYRNDE-LTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPL 100 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g-~~~~v~~~~~-~~~~~l~~~~~dgiii~GG~~~~~~~~-~~~~~i~~~~~~~Pv 100 (229)
+++|+|+|....+...+...|+..+ +.+...-.+. ...+.+....+|.+|+-=. .+...+ .+.+.+++.....|+
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~~~~~dlvllD~~--lp~~~g~~~~~~lr~~~~~~~i 82 (215)
T 1a04_A 5 PATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLN--MPGMNGLETLDKLREKSLSGRI 82 (215)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHHCCSEEEEETT--STTSCHHHHHHHHHHSCCCSEE
T ss_pred ceEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHhcCCCEEEEeCC--CCCCcHHHHHHHHHHhCCCCcE
Confidence 4689999975556667778887764 5553222221 1112233346888877321 122222 456667766667888
Q ss_pred EEEeh
Q 027062 101 FGVCM 105 (229)
Q Consensus 101 lGIC~ 105 (229)
+-+..
T Consensus 83 i~ls~ 87 (215)
T 1a04_A 83 VVFSV 87 (215)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 77653
No 227
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=66.19 E-value=4.4 Score=27.62 Aligned_cols=78 Identities=12% Similarity=0.064 Sum_probs=43.0
Q ss_pred ceEEEEECCCchhHHHHHHHHHc-CCEEEEEeCCc-cCHHHHhccCCCEEEECCCCCCCCCc-chHHHHHHHh-CCCCcE
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYRNDE-LTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLEL-GPTVPL 100 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~-g~~~~v~~~~~-~~~~~l~~~~~dgiii~GG~~~~~~~-~~~~~~i~~~-~~~~Pv 100 (229)
++|+|+|........+.+.++.. |+.+...-.+. ...+.+....+|.+++-=. .+... -.+++.+++. ....|+
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~dlvllD~~--l~~~~g~~~~~~l~~~~~~~~~i 80 (130)
T 1dz3_A 3 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKRPDILLLDII--MPHLDGLAVLERIRAGFEHQPNV 80 (130)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEEESC--CSSSCHHHHHHHHHHHCSSCCEE
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhcCCCCEEEEecC--CCCCCHHHHHHHHHhcCCCCCcE
Confidence 57999997555666788888876 66654222221 1122233346888876321 12222 2345666654 355677
Q ss_pred EEEe
Q 027062 101 FGVC 104 (229)
Q Consensus 101 lGIC 104 (229)
+-+.
T Consensus 81 i~ls 84 (130)
T 1dz3_A 81 IMLT 84 (130)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6554
No 228
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=64.45 E-value=15 Score=29.44 Aligned_cols=54 Identities=17% Similarity=0.180 Sum_probs=32.5
Q ss_pred CceEEEEECC--Cchh----HHHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCC
Q 027062 24 KNPIIVIDNY--DSFT----YNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (229)
Q Consensus 24 ~~~ilvid~~--~~~~----~~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG 77 (229)
+.+|.|+-.. +.|. ..+.+.+++.|+++.+...+.... +.+...++||||+.+.
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~ 68 (330)
T 3uug_A 3 KGSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVTKGVKVLVIASI 68 (330)
T ss_dssp CCEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCS
T ss_pred CcEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 4566666432 2343 335667778899998887542211 1222347999999864
No 229
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=64.16 E-value=16 Score=28.63 Aligned_cols=75 Identities=15% Similarity=0.190 Sum_probs=41.1
Q ss_pred CCceEEEEEC--CCchh----HHHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCCCCCCCCcchHHHH
Q 027062 23 NKNPIIVIDN--YDSFT----YNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGPGAPQDSGISLQT 90 (229)
Q Consensus 23 ~~~~ilvid~--~~~~~----~~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG~~~~~~~~~~~~~ 90 (229)
.+.+|.++-. .+.|. ..+.+.+++.|+++.+...+.... +.+...++||||+.+.... ...++.
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~----~~~~~~ 82 (285)
T 3c3k_A 7 KTGMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLCNTESDLARSRSCLTLLSGKMVDGVITMDALSE----LPELQN 82 (285)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHTHHHHTTCCSEEEECCCGGG----HHHHHH
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC----hHHHHH
Confidence 3456777743 22333 235566777899998876542111 1233347999999864321 122333
Q ss_pred HHHhCCCCcEEEEe
Q 027062 91 VLELGPTVPLFGVC 104 (229)
Q Consensus 91 i~~~~~~~PvlGIC 104 (229)
+. .++|+.-+.
T Consensus 83 l~---~~iPvV~~~ 93 (285)
T 3c3k_A 83 II---GAFPWVQCA 93 (285)
T ss_dssp HH---TTSSEEEES
T ss_pred Hh---cCCCEEEEc
Confidence 32 457776553
No 230
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=64.07 E-value=6.4 Score=33.08 Aligned_cols=31 Identities=29% Similarity=0.535 Sum_probs=23.2
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEe
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYR 55 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~ 55 (229)
++|+|||........+...|+..|+.+....
T Consensus 1 ~~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~ 31 (368)
T 3dzd_A 1 KRVLVVDDEESITSSLSAILEEEGYHPDTAK 31 (368)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEES
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEEC
Confidence 4799999655566778888888898876544
No 231
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=63.64 E-value=28 Score=27.70 Aligned_cols=76 Identities=16% Similarity=0.218 Sum_probs=44.1
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCH---HHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCc
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTV---EELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVP 99 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~---~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~P 99 (229)
.+.+|++|.........+.++.+..|...+.-++-.... ....-..+|.||++. +..+...+.+...+ ++|
T Consensus 103 ~~~~iLfVgTk~~aq~~V~~~A~~~g~~yv~~RWlgG~LTN~~~~~f~~PdlliV~D----p~~e~~AI~EA~~l--gIP 176 (253)
T 3bch_A 103 NPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTD----PRADHQPLTEASYV--NLP 176 (253)
T ss_dssp SGGGEEEEECSHHHHHHHHHHHHHHCCEEEESCCCTTTTTCCSCSTTCSCSEEEESC----TTTTHHHHHHHHHT--TCC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhCCeeecceecCCcccCccccccCCCCEEEEEC----CCccchHHHHHHHh--CCC
Confidence 355688888644444556677777888776555421110 000111578888873 33333344444455 599
Q ss_pred EEEEe
Q 027062 100 LFGVC 104 (229)
Q Consensus 100 vlGIC 104 (229)
++|+|
T Consensus 177 vIalv 181 (253)
T 3bch_A 177 TIALC 181 (253)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99999
No 232
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=62.65 E-value=26 Score=27.31 Aligned_cols=53 Identities=11% Similarity=0.266 Sum_probs=30.9
Q ss_pred ceEEEEEC--CCchh----HHHHHHHHHcCCEEEEEeCCccC------HHHHhccCCCEEEECCC
Q 027062 25 NPIIVIDN--YDSFT----YNLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPG 77 (229)
Q Consensus 25 ~~ilvid~--~~~~~----~~~~~~l~~~g~~~~v~~~~~~~------~~~l~~~~~dgiii~GG 77 (229)
.+|.++-. .+.|. ..+.+.+++.|+++.+....... .+.+...++||||+.+.
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 67 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPT 67 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 35666633 22333 23566677889999887653211 12233347999999864
No 233
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=62.59 E-value=17 Score=26.63 Aligned_cols=78 Identities=15% Similarity=0.164 Sum_probs=44.2
Q ss_pred CCceEEEEECC-Cc--h-hHHHHHHHHHcCCEEEEEeCCccCHHHHh----ccCCCEEEECCCCCCC-CCcchHHHHHHH
Q 027062 23 NKNPIIVIDNY-DS--F-TYNLCQYMGELGYHFEVYRNDELTVEELK----RKNPRGVLISPGPGAP-QDSGISLQTVLE 93 (229)
Q Consensus 23 ~~~~ilvid~~-~~--~-~~~~~~~l~~~g~~~~v~~~~~~~~~~l~----~~~~dgiii~GG~~~~-~~~~~~~~~i~~ 93 (229)
.+.+|++--.. +. . ...+...|+..|+++.....+ .+.+++. +.++|.|.++.-.... .....+++.+++
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~-~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i~~L~~ 95 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLR-QTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMAKLRE 95 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSB-CCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHHHHHHh
Confidence 45566665222 22 1 234667789999999977654 5555543 3488999998643311 111234455555
Q ss_pred hC-CCCcEE
Q 027062 94 LG-PTVPLF 101 (229)
Q Consensus 94 ~~-~~~Pvl 101 (229)
.+ +++||+
T Consensus 96 ~g~~~i~v~ 104 (161)
T 2yxb_A 96 LGADDIPVV 104 (161)
T ss_dssp TTCTTSCEE
T ss_pred cCCCCCEEE
Confidence 44 356654
No 234
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=62.59 E-value=28 Score=28.83 Aligned_cols=66 Identities=12% Similarity=0.159 Sum_probs=33.5
Q ss_pred CcccccccccccccCCCceEEEEECCCchhHHHHHHHHHcCCEEEEEe-CCc----------------cCHHHHhc-cCC
Q 027062 8 PISKSLYLDDKKSKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYR-NDE----------------LTVEELKR-KNP 69 (229)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~-~~~----------------~~~~~l~~-~~~ 69 (229)
|++...+ ++|++++||.||..+..-...+...+...++++.-+- .+. .+.+++.+ .++
T Consensus 14 ~~~~~~~----~~Mm~~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~v 89 (361)
T 3u3x_A 14 GTENLYF----QSMMDELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENI 89 (361)
T ss_dssp ----------------CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTC
T ss_pred CCccchh----hhhccCcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCC
Confidence 4444444 4455678999999854333456666777788876442 110 12344433 258
Q ss_pred CEEEECCC
Q 027062 70 RGVLISPG 77 (229)
Q Consensus 70 dgiii~GG 77 (229)
|+|+|...
T Consensus 90 D~V~I~tp 97 (361)
T 3u3x_A 90 GLIVSAAV 97 (361)
T ss_dssp CEEEECCC
T ss_pred CEEEEeCC
Confidence 99998765
No 235
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=62.50 E-value=5.8 Score=28.21 Aligned_cols=50 Identities=14% Similarity=0.230 Sum_probs=29.8
Q ss_pred ceEEEE-ECCCchhHH----HHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEEC
Q 027062 25 NPIIVI-DNYDSFTYN----LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLIS 75 (229)
Q Consensus 25 ~~ilvi-d~~~~~~~~----~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~ 75 (229)
++|+|+ ....+.+.. +.+.+++.|+++.++...+.+..++.. ++|+|||.
T Consensus 2 ~ki~I~y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~l~~-~~d~ii~g 56 (148)
T 3f6r_A 2 SKVLIVFGSSTGNTESIAQKLEELIAAGGHEVTLLNAADASAENLAD-GYDAVLFG 56 (148)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHTTTCEEEEEETTTBCCTTTTT-TCSEEEEE
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEehhhCCHhHhcc-cCCEEEEE
Confidence 467666 323334444 444556679999998876554455541 45877764
No 236
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=62.27 E-value=22 Score=26.05 Aligned_cols=69 Identities=12% Similarity=0.151 Sum_probs=36.7
Q ss_pred CceEEEEECC---------CchhHHHHHHHHHc-----CCEEEEEe--CCcc-CH-HHHhc----cCCCEEEECCCCCCC
Q 027062 24 KNPIIVIDNY---------DSFTYNLCQYMGEL-----GYHFEVYR--NDEL-TV-EELKR----KNPRGVLISPGPGAP 81 (229)
Q Consensus 24 ~~~ilvid~~---------~~~~~~~~~~l~~~-----g~~~~v~~--~~~~-~~-~~l~~----~~~dgiii~GG~~~~ 81 (229)
++++.||--+ ++....+.+.+++. |+++..+. .|+. .. +.+.+ .++|.||.+||.+-
T Consensus 5 ~~rv~IistGde~~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~- 83 (167)
T 1uuy_A 5 EYKVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDEVERIKDILQKWSDVDEMDLILTLGGTGF- 83 (167)
T ss_dssp SEEEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSS-
T ss_pred CcEEEEEEECCcccCCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCCCC-
Confidence 4566666432 33344577888887 88775332 1321 11 12222 25899999998653
Q ss_pred CCcchHHHHHHH
Q 027062 82 QDSGISLQTVLE 93 (229)
Q Consensus 82 ~~~~~~~~~i~~ 93 (229)
.+.+...+.+.+
T Consensus 84 g~~D~t~~a~~~ 95 (167)
T 1uuy_A 84 TPRDVTPEATKK 95 (167)
T ss_dssp STTCCHHHHHHH
T ss_pred CCCCchHHHHHH
Confidence 333333344444
No 237
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=61.92 E-value=42 Score=26.51 Aligned_cols=79 Identities=14% Similarity=0.143 Sum_probs=46.7
Q ss_pred CCCceEEEEECCCc---h-hHHHHHHHHHcCCEEEEEeCCccCHHHH----hccCCCEEEECCCCCCC-CCcchHHHHHH
Q 027062 22 NNKNPIIVIDNYDS---F-TYNLCQYMGELGYHFEVYRNDELTVEEL----KRKNPRGVLISPGPGAP-QDSGISLQTVL 92 (229)
Q Consensus 22 ~~~~~ilvid~~~~---~-~~~~~~~l~~~g~~~~v~~~~~~~~~~l----~~~~~dgiii~GG~~~~-~~~~~~~~~i~ 92 (229)
..+.+|++.--.+. . ...+...|+..|+++.....+ .+.+++ ...++|.|.++...... .....+++.++
T Consensus 121 ~~~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~-vp~e~l~~~~~~~~~d~V~lS~l~~~~~~~~~~~i~~l~ 199 (258)
T 2i2x_B 121 KTKGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRD-VPAEEVLAAVQKEKPIMLTGTALMTTTMYAFKEVNDMLL 199 (258)
T ss_dssp CCSCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEE-CCSHHHHHHHHHHCCSEEEEECCCTTTTTHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEEEeeccCCHHHHHHHHHHHH
Confidence 34566766643322 2 234667789999999887654 454554 33489999998753321 12233455565
Q ss_pred HhCCCCcEE
Q 027062 93 ELGPTVPLF 101 (229)
Q Consensus 93 ~~~~~~Pvl 101 (229)
+.+.++||+
T Consensus 200 ~~~~~~~v~ 208 (258)
T 2i2x_B 200 ENGIKIPFA 208 (258)
T ss_dssp TTTCCCCEE
T ss_pred hcCCCCcEE
Confidence 555456654
No 238
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=61.58 E-value=9.4 Score=32.68 Aligned_cols=58 Identities=19% Similarity=0.172 Sum_probs=30.7
Q ss_pred chhHHHHHHHHHcCCEEEEEeCCccCHHH----Hhcc--CCCEEEECCCCCCCCCcchHHHHHHH
Q 027062 35 SFTYNLCQYMGELGYHFEVYRNDELTVEE----LKRK--NPRGVLISPGPGAPQDSGISLQTVLE 93 (229)
Q Consensus 35 ~~~~~~~~~l~~~g~~~~v~~~~~~~~~~----l~~~--~~dgiii~GG~~~~~~~~~~~~~i~~ 93 (229)
++...+..+|+++|+++..+..-..+.+. +.+. ++|.||.+||.+- .+.+...+.+.+
T Consensus 207 sN~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlVittGG~s~-g~~D~t~~al~~ 270 (402)
T 1uz5_A 207 INGRALCDAINELGGEGIFMGVARDDKESLKALIEKAVNVGDVVVISGGASG-GTKDLTASVIEE 270 (402)
T ss_dssp CHHHHHHHHHHHHTSEEEEEEEECSSHHHHHHHHHHHHHHCSEEEEECCC------CHHHHHHHH
T ss_pred chHHHHHHHHHhCCCeEEEEEEeCCCHHHHHHHHHHHhhCCCEEEEcCCCCC-CCcccHHHHHHh
Confidence 44566889999999988643311011222 2211 5799999998653 333333344443
No 239
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=60.94 E-value=24 Score=28.61 Aligned_cols=75 Identities=19% Similarity=0.127 Sum_probs=40.4
Q ss_pred CCceEEEEEC--CCchhH----HHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCCCCCCCCcchHHHH
Q 027062 23 NKNPIIVIDN--YDSFTY----NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGPGAPQDSGISLQT 90 (229)
Q Consensus 23 ~~~~ilvid~--~~~~~~----~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG~~~~~~~~~~~~~ 90 (229)
.+..|.+|-. .+.|.. .+.+.+++.|+.+.+...+.... +.+...++||||+.+... ....++.
T Consensus 67 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~~----~~~~~~~ 142 (344)
T 3kjx_A 67 RVNLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLEH----SEAARAM 142 (344)
T ss_dssp CCSEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCC----CHHHHHH
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEECCCC----CHHHHHH
Confidence 3456777632 223433 35566677899998876542111 123334799999986432 1233333
Q ss_pred HHHhCCCCcEEEE
Q 027062 91 VLELGPTVPLFGV 103 (229)
Q Consensus 91 i~~~~~~~PvlGI 103 (229)
+.+ .++|+.-+
T Consensus 143 l~~--~~iPvV~i 153 (344)
T 3kjx_A 143 LDA--AGIPVVEI 153 (344)
T ss_dssp HHH--CSSCEEEE
T ss_pred HHh--CCCCEEEE
Confidence 333 34666554
No 240
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=60.74 E-value=13 Score=29.24 Aligned_cols=76 Identities=12% Similarity=0.163 Sum_probs=42.2
Q ss_pred CCceEEEEEC--CCchhH----HHHHHHHHcCCEEEEEeCCcc-CH-------HHHhccCCCEEEECCCCCCCCCcchHH
Q 027062 23 NKNPIIVIDN--YDSFTY----NLCQYMGELGYHFEVYRNDEL-TV-------EELKRKNPRGVLISPGPGAPQDSGISL 88 (229)
Q Consensus 23 ~~~~ilvid~--~~~~~~----~~~~~l~~~g~~~~v~~~~~~-~~-------~~l~~~~~dgiii~GG~~~~~~~~~~~ 88 (229)
++.+|.||-. .+.|.. .+.+.+++.|+++.+...+.. +. +.+...++||||+.+.... .....+
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~--~~~~~~ 81 (304)
T 3o1i_D 4 SDEKICAIYPHLKDSYWLSVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPH--AYEHNL 81 (304)
T ss_dssp -CCEEEEEESCSCSHHHHHHHHHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTT--SSTTTH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh--HHHHHH
Confidence 3456776643 223433 356667788999998876531 21 1123347999999864332 112223
Q ss_pred HHHHHhCCCCcEEEE
Q 027062 89 QTVLELGPTVPLFGV 103 (229)
Q Consensus 89 ~~i~~~~~~~PvlGI 103 (229)
+.+. .++|+.-+
T Consensus 82 ~~~~---~~iPvV~~ 93 (304)
T 3o1i_D 82 KSWV---GNTPVFAT 93 (304)
T ss_dssp HHHT---TTSCEEEC
T ss_pred HHHc---CCCCEEEe
Confidence 3332 46887766
No 241
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=60.71 E-value=12 Score=25.71 Aligned_cols=74 Identities=3% Similarity=-0.045 Sum_probs=40.0
Q ss_pred CCCceEEEEECCCchhHH----HHHHHHHcCCEEEEEe--CCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHH-h
Q 027062 22 NNKNPIIVIDNYDSFTYN----LCQYMGELGYHFEVYR--NDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLE-L 94 (229)
Q Consensus 22 ~~~~~ilvid~~~~~~~~----~~~~l~~~g~~~~v~~--~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~-~ 94 (229)
.+.++|+++=..+.-+.. +.++.++.|+++.+.. ..+. .+.++ ++|.|++. |.-.+. .+.+.+ .
T Consensus 4 ~~~mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~a~~~~~~-~~~~~--~~DvvLLg--PQV~y~----~~~ik~~~ 74 (108)
T 3nbm_A 4 SKELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAH-YDIMG--VYDLIILA--PQVRSY----YREMKVDA 74 (108)
T ss_dssp -CCEEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEEEETTSC-TTTGG--GCSEEEEC--GGGGGG----HHHHHHHH
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEcchHHH-Hhhcc--CCCEEEEC--hHHHHH----HHHHHHHh
Confidence 356789888765444433 4455566799988854 3321 12222 57888873 332222 233333 2
Q ss_pred -CCCCcEEEEe
Q 027062 95 -GPTVPLFGVC 104 (229)
Q Consensus 95 -~~~~PvlGIC 104 (229)
..++||.=|=
T Consensus 75 ~~~~ipV~vI~ 85 (108)
T 3nbm_A 75 ERLGIQIVATR 85 (108)
T ss_dssp TTTTCEEEECC
T ss_pred hhcCCcEEEeC
Confidence 2368887553
No 242
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=60.03 E-value=30 Score=27.78 Aligned_cols=55 Identities=13% Similarity=0.147 Sum_probs=32.5
Q ss_pred CCceEEEEEC--CCchhH----HHHHHHHHcCCEEEEEeCCccC------HHHHhccCCCEEEECCC
Q 027062 23 NKNPIIVIDN--YDSFTY----NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPG 77 (229)
Q Consensus 23 ~~~~ilvid~--~~~~~~----~~~~~l~~~g~~~~v~~~~~~~------~~~l~~~~~dgiii~GG 77 (229)
.+.+|.+|-. .+.|.. .+.+.+++.|+.+.+...+... .+.+...++||||+.+.
T Consensus 62 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 128 (332)
T 2o20_A 62 RTTTVGVILPTITSTYFAAITRGVDDIASMYKYNMILANSDNDVEKEEKVLETFLSKQVDGIVYMGS 128 (332)
T ss_dssp CCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECSS
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEECCCChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 3456777643 223333 3556677789999887654211 11233347999999875
No 243
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=59.36 E-value=39 Score=23.04 Aligned_cols=35 Identities=14% Similarity=0.225 Sum_probs=23.9
Q ss_pred HHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECC
Q 027062 40 LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISP 76 (229)
Q Consensus 40 ~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~G 76 (229)
+.+.+++.|++++++...+.+.+++. ++|+|||..
T Consensus 20 i~~~l~~~g~~v~~~~~~~~~~~~l~--~~d~vi~g~ 54 (137)
T 2fz5_A 20 IEAAVKAAGADVESVRFEDTNVDDVA--SKDVILLGC 54 (137)
T ss_dssp HHHHHHHTTCCEEEEETTSCCHHHHH--TCSEEEEEC
T ss_pred HHHHHHhCCCeEEEEEcccCCHHHHh--cCCEEEEEc
Confidence 44445567899998887655566666 558887743
No 244
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=58.81 E-value=4.4 Score=35.30 Aligned_cols=56 Identities=13% Similarity=0.109 Sum_probs=40.3
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCC
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGA 80 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~ 80 (229)
..|+|+|+.. +.+-..+++.|.+.|.++.++..+....+.+.+ ++|..++.|-+.+
T Consensus 2 ~~M~iiI~G~-G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~-~~~~~~i~Gd~~~ 57 (461)
T 4g65_A 2 NAMKIIILGA-GQVGGTLAENLVGENNDITIVDKDGDRLRELQD-KYDLRVVNGHASH 57 (461)
T ss_dssp CCEEEEEECC-SHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHH-HSSCEEEESCTTC
T ss_pred CcCEEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-hcCcEEEEEcCCC
Confidence 4689999986 567778999999999999999876433334432 3577777776543
No 245
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=58.01 E-value=41 Score=27.45 Aligned_cols=76 Identities=14% Similarity=0.202 Sum_probs=43.2
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCcc---CHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCc
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL---TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVP 99 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~---~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~P 99 (229)
.+.+|++|.........+.++.+..|...+.-++-.. +.....-..+|.|||+. +..+...+++...+ ++|
T Consensus 70 ~~~~ILfVgTk~~aq~~V~k~A~~~g~~yv~~RWlgG~LTN~~t~~f~~PdlliV~D----p~~e~~AI~EA~~l--gIP 143 (295)
T 2zkq_b 70 NPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTD----PRADHQPLTEASYV--NLP 143 (295)
T ss_dssp CGGGEEEEECSHHHHHHHHHHHHHHCCEEEESSCCCC-CCCTTCSSCCCCSEEEESC----TTTTHHHHHHHHHH--TCC
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHhCCceecceEecccccCcccccccCCCeEEEeC----CCcchhHHHHHHHh--CCC
Confidence 3556888886433445566667777877665443210 00000111578888874 33334445555555 499
Q ss_pred EEEEe
Q 027062 100 LFGVC 104 (229)
Q Consensus 100 vlGIC 104 (229)
++|+|
T Consensus 144 vIalv 148 (295)
T 2zkq_b 144 TIALC 148 (295)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99998
No 246
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=57.57 E-value=14 Score=27.76 Aligned_cols=74 Identities=16% Similarity=0.192 Sum_probs=43.9
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhc-cCCCEEEECCCCCCCCCcc-hHHHHHHHhCCCCcEEE
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFG 102 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~-~~~dgiii~GG~~~~~~~~-~~~~~i~~~~~~~PvlG 102 (229)
++|+|+|........+...|+..| .+...... .+.+.. ..+|.+|+-=. .+...+ .+.+.+++.....|++-
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~---~~al~~~~~~dlvllD~~--lp~~~g~~~~~~lr~~~~~~~ii~ 76 (220)
T 1p2f_A 3 WKIAVVDDDKNILKKVSEKLQQLG-RVKTFLTG---EDFLNDEEAFHVVVLDVM--LPDYSGYEICRMIKETRPETWVIL 76 (220)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTTE-EEEEESSH---HHHHHCCSCCSEEEEESB--CSSSBHHHHHHHHHHHCTTSEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCC-CEEEECCH---HHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHhcCCCCcEEE
Confidence 589999975556677888888888 55433321 122221 36787776321 122222 35666666656789887
Q ss_pred Ee
Q 027062 103 VC 104 (229)
Q Consensus 103 IC 104 (229)
+.
T Consensus 77 lt 78 (220)
T 1p2f_A 77 LT 78 (220)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 247
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=57.35 E-value=11 Score=28.67 Aligned_cols=80 Identities=10% Similarity=0.010 Sum_probs=47.7
Q ss_pred cCCCceEEEEECCCchhHHHHHHHHH-cCCEEEEEeCCccCHHHHh----ccCCCEEEECCCCCCCCCcc-hHHHHHHH-
Q 027062 21 KNNKNPIIVIDNYDSFTYNLCQYMGE-LGYHFEVYRNDELTVEELK----RKNPRGVLISPGPGAPQDSG-ISLQTVLE- 93 (229)
Q Consensus 21 ~~~~~~ilvid~~~~~~~~~~~~l~~-~g~~~~v~~~~~~~~~~l~----~~~~dgiii~GG~~~~~~~~-~~~~~i~~- 93 (229)
+..+++|+|||........+...|+. .|+.+.....+ ..+.+. ...||.+|+== ..+...+ .+++.+++
T Consensus 4 ~~~~~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~--~~~~~~~~~~~~~~dlvllD~--~mp~~~G~~~~~~lr~~ 79 (225)
T 3klo_A 4 DENKLNVRMLSDVCMQSRLLKEALESKLPLALEITPFS--ELWLEENKPESRSIQMLVIDY--SRISDDVLTDYSSFKHI 79 (225)
T ss_dssp CCSSEEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGG--GHHHHTTCSGGGGCCEEEEEG--GGCCHHHHHHHHHHHHH
T ss_pred CCCceEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCC--cHHHHHHHhhccCCCEEEEeC--CCCCCCHHHHHHHHHHh
Confidence 34567899999765567778888884 57777544322 222222 23688887721 1122122 34566666
Q ss_pred hCCCCcEEEEe
Q 027062 94 LGPTVPLFGVC 104 (229)
Q Consensus 94 ~~~~~PvlGIC 104 (229)
.....||+-+.
T Consensus 80 ~~~~~~ii~lt 90 (225)
T 3klo_A 80 SCPDAKEVIIN 90 (225)
T ss_dssp HCTTCEEEEEE
T ss_pred hCCCCcEEEEE
Confidence 56678988765
No 248
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=57.32 E-value=50 Score=26.00 Aligned_cols=57 Identities=16% Similarity=0.178 Sum_probs=33.5
Q ss_pred CCCceEEEEECC-------CchhH----HHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCCC
Q 027062 22 NNKNPIIVIDNY-------DSFTY----NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGP 78 (229)
Q Consensus 22 ~~~~~ilvid~~-------~~~~~----~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG~ 78 (229)
..+..|.||-.. +.|.. .+.+.+++.|+.+.+...+.... +.+...++||||+.+..
T Consensus 20 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 93 (305)
T 3huu_A 20 NKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSL 93 (305)
T ss_dssp -CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTTCCSEEEESSCB
T ss_pred CCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCc
Confidence 345668777432 22332 35566777899998876542111 12333479999998754
No 249
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=57.24 E-value=33 Score=26.89 Aligned_cols=54 Identities=11% Similarity=0.100 Sum_probs=31.6
Q ss_pred ceEEEE-ECCCchhH----HHHHHHHHcCCEEEEEeCCcc-CH----HHHhccCCCEEEECCCC
Q 027062 25 NPIIVI-DNYDSFTY----NLCQYMGELGYHFEVYRNDEL-TV----EELKRKNPRGVLISPGP 78 (229)
Q Consensus 25 ~~ilvi-d~~~~~~~----~~~~~l~~~g~~~~v~~~~~~-~~----~~l~~~~~dgiii~GG~ 78 (229)
..|.|| +..+.|.. .+.+.+++.|+.+.+...+.. .. +.+...++||||+.+..
T Consensus 13 ~~Igvi~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 76 (289)
T 3k9c_A 13 RLLGVVFELQQPFHGDLVEQIYAAATRRGYDVMLSAVAPSRAEKVAVQALMRERCEAAILLGTR 76 (289)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTTTTEEEEEEETCC
T ss_pred CEEEEEEecCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHhCCCCEEEEECCC
Confidence 445444 44334433 356667788999988764321 11 22333478999998754
No 250
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=57.19 E-value=62 Score=28.15 Aligned_cols=34 Identities=9% Similarity=0.017 Sum_probs=26.8
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEEEEeC
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN 56 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~ 56 (229)
..++|+||.-+.+--..++++|.+.|++|.....
T Consensus 21 ~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~ 54 (494)
T 4hv4_A 21 RVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDL 54 (494)
T ss_dssp -CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECS
T ss_pred cCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEEC
Confidence 4578999998766555589999999999988764
No 251
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=57.08 E-value=63 Score=25.33 Aligned_cols=39 Identities=15% Similarity=0.304 Sum_probs=24.4
Q ss_pred CCCceEEEEECC---CchhHHHH----HHHHHcCCEEEEEeCCccC
Q 027062 22 NNKNPIIVIDNY---DSFTYNLC----QYMGELGYHFEVYRNDELT 60 (229)
Q Consensus 22 ~~~~~ilvid~~---~~~~~~~~----~~l~~~g~~~~v~~~~~~~ 60 (229)
..+|+|++|..- .+++..++ +.+++.|++++++...+.+
T Consensus 32 ~~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL~~~p 77 (247)
T 2q62_A 32 THRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLP 77 (247)
T ss_dssp CSCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCCTTCC
T ss_pred CCCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEhhcCC
Confidence 346789999742 24554444 4455679999988754443
No 252
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=56.94 E-value=15 Score=25.65 Aligned_cols=33 Identities=15% Similarity=0.183 Sum_probs=26.3
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCC
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND 57 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~ 57 (229)
+++|+|+.. +.+-..+++.|.+.|.++.++..+
T Consensus 6 ~~~v~I~G~-G~iG~~la~~L~~~g~~V~~id~~ 38 (141)
T 3llv_A 6 RYEYIVIGS-EAAGVGLVRELTAAGKKVLAVDKS 38 (141)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCeEEEEECC
Confidence 457999986 456677889999999999888765
No 253
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=56.93 E-value=18 Score=28.00 Aligned_cols=74 Identities=15% Similarity=0.219 Sum_probs=38.9
Q ss_pred CceEEEEEC--CCchh----HHHHHHHHHcCCEEEEEeCCccC------HHHHhccCCCEEEECCCCCCCCCcchHHHHH
Q 027062 24 KNPIIVIDN--YDSFT----YNLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQTV 91 (229)
Q Consensus 24 ~~~ilvid~--~~~~~----~~~~~~l~~~g~~~~v~~~~~~~------~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i 91 (229)
+.+|.+|-. .+.|. ..+.+.+++.|+++.+...+... .+.+...++||||+.+.... ...++.+
T Consensus 3 s~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~----~~~~~~l 78 (275)
T 3d8u_A 3 AYSIALIIPSLFEKACAHFLPSFQQALNKAGYQLLLGYSDYSIEQEEKLLSTFLESRPAGVVLFGSEHS----QRTHQLL 78 (275)
T ss_dssp -CEEEEEESCSSCHHHHHHHHHHHHHHHHTSCEECCEECTTCHHHHHHHHHHHHTSCCCCEEEESSCCC----HHHHHHH
T ss_pred ceEEEEEeCCCccccHHHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC----HHHHHHH
Confidence 345666632 22233 23556677789998877653211 12233347999999874321 2333333
Q ss_pred HHhCCCCcEEEE
Q 027062 92 LELGPTVPLFGV 103 (229)
Q Consensus 92 ~~~~~~~PvlGI 103 (229)
.+. ++|+.-+
T Consensus 79 ~~~--~iPvV~~ 88 (275)
T 3d8u_A 79 EAS--NTPVLEI 88 (275)
T ss_dssp HHH--TCCEEEE
T ss_pred HhC--CCCEEEE
Confidence 332 4666554
No 254
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=56.59 E-value=32 Score=26.72 Aligned_cols=56 Identities=11% Similarity=0.100 Sum_probs=31.5
Q ss_pred CCceEEEEEC--CCchhH----HHHHHHHHcCCEEEEEeCCccC------HHHHhccCCCEEEECCCC
Q 027062 23 NKNPIIVIDN--YDSFTY----NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGP 78 (229)
Q Consensus 23 ~~~~ilvid~--~~~~~~----~~~~~l~~~g~~~~v~~~~~~~------~~~l~~~~~dgiii~GG~ 78 (229)
.+.+|.++-. .+.|.. .+.+.+++.|+++.+...+... .+.+...++||||+.+..
T Consensus 6 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 73 (289)
T 1dbq_A 6 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSE 73 (289)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHhCCCCEEEEEecc
Confidence 3456777643 222332 3556667789999887653211 112333479999998743
No 255
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=56.43 E-value=65 Score=25.78 Aligned_cols=56 Identities=9% Similarity=0.112 Sum_probs=33.6
Q ss_pred CCceEEEEECC----Cchh----HHHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCCC
Q 027062 23 NKNPIIVIDNY----DSFT----YNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGP 78 (229)
Q Consensus 23 ~~~~ilvid~~----~~~~----~~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG~ 78 (229)
.+..|.+|-.. +.|. ..+.+.+++.|+.+.+........ +.+...++||||+.+..
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 129 (338)
T 3dbi_A 60 STQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRF 129 (338)
T ss_dssp CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred CCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 34567666432 2333 335666778899999887542211 12333479999998753
No 256
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=56.32 E-value=40 Score=26.45 Aligned_cols=40 Identities=5% Similarity=0.124 Sum_probs=25.9
Q ss_pred HHHHHHHHcCCEEEEEeCCcc-CH----HHHhccCCCEEEECCCC
Q 027062 39 NLCQYMGELGYHFEVYRNDEL-TV----EELKRKNPRGVLISPGP 78 (229)
Q Consensus 39 ~~~~~l~~~g~~~~v~~~~~~-~~----~~l~~~~~dgiii~GG~ 78 (229)
.+.+.+++.|+.+.+...++. .. +.+...++||||+.+..
T Consensus 31 gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~ 75 (294)
T 3qk7_A 31 WIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQ 75 (294)
T ss_dssp HHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCC
T ss_pred HHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCC
Confidence 356667788999988765421 11 12333479999998754
No 257
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=55.28 E-value=24 Score=27.67 Aligned_cols=55 Identities=22% Similarity=0.319 Sum_probs=31.3
Q ss_pred CCceEEEEECC--C--chhHH----HHHHHHHcCCEEEEEeCCcc--CHHH----HhccCCCEEEECCC
Q 027062 23 NKNPIIVIDNY--D--SFTYN----LCQYMGELGYHFEVYRNDEL--TVEE----LKRKNPRGVLISPG 77 (229)
Q Consensus 23 ~~~~ilvid~~--~--~~~~~----~~~~l~~~g~~~~v~~~~~~--~~~~----l~~~~~dgiii~GG 77 (229)
.+..|.||-.. + .|... +.+.+++.|+.+.+...+.. .... +...++||||+.+.
T Consensus 7 ~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 75 (288)
T 3gv0_A 7 KTNVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKI 75 (288)
T ss_dssp CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESC
T ss_pred CCCEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecC
Confidence 34567666321 1 44333 45566778999988764321 1111 22347999999864
No 258
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=55.12 E-value=50 Score=26.66 Aligned_cols=53 Identities=11% Similarity=0.208 Sum_probs=32.0
Q ss_pred CceEEEEECC--C-chh----HHHHHHHHHcCCEEEEEeCCccCH------HHHhc--cCCCEEEECC
Q 027062 24 KNPIIVIDNY--D-SFT----YNLCQYMGELGYHFEVYRNDELTV------EELKR--KNPRGVLISP 76 (229)
Q Consensus 24 ~~~ilvid~~--~-~~~----~~~~~~l~~~g~~~~v~~~~~~~~------~~l~~--~~~dgiii~G 76 (229)
+++|.+|-.. + .|. ..+.+++++.|+++.+...+.... +.+.. .++||||+.+
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~ 70 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVN 70 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEEC
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 4567777442 2 333 235666777899999887542211 12223 4799999975
No 259
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=55.06 E-value=25 Score=28.68 Aligned_cols=75 Identities=9% Similarity=0.149 Sum_probs=40.4
Q ss_pred CCceEEEEECC--Cchh----HHHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCCCCCCCCcchHHHH
Q 027062 23 NKNPIIVIDNY--DSFT----YNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGPGAPQDSGISLQT 90 (229)
Q Consensus 23 ~~~~ilvid~~--~~~~----~~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG~~~~~~~~~~~~~ 90 (229)
.+..|.+|-.. +.|. ..+.+.+++.|+.+.+...+.... +.+...++||||+.+...+ ...++.
T Consensus 69 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~----~~~~~~ 144 (355)
T 3e3m_A 69 RSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLGYTAYSPEREEQLVETMLRRRPEAMVLSYDGHT----EQTIRL 144 (355)
T ss_dssp --CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEECSCCC----HHHHHH
T ss_pred CCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCC----HHHHHH
Confidence 34567776432 2232 335667778899998887542111 1223347999999864321 223333
Q ss_pred HHHhCCCCcEEEE
Q 027062 91 VLELGPTVPLFGV 103 (229)
Q Consensus 91 i~~~~~~~PvlGI 103 (229)
+.+ .++|+.-+
T Consensus 145 l~~--~~iPvV~i 155 (355)
T 3e3m_A 145 LQR--ASIPIVEI 155 (355)
T ss_dssp HHH--CCSCEEEE
T ss_pred HHh--CCCCEEEE
Confidence 333 35777655
No 260
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=55.05 E-value=14 Score=28.77 Aligned_cols=73 Identities=12% Similarity=0.133 Sum_probs=38.8
Q ss_pred CCceEEEEEC--CCchh----HHHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCCCCCCCCcchHHH-
Q 027062 23 NKNPIIVIDN--YDSFT----YNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGPGAPQDSGISLQ- 89 (229)
Q Consensus 23 ~~~~ilvid~--~~~~~----~~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG~~~~~~~~~~~~- 89 (229)
++.+|.|+-. .+.|. ..+.+.+++.|+.+.+........ +.+...++||||+.+. ....++
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~~------~~~~~~~ 80 (277)
T 3e61_A 7 KSKLIGLLLPDMSNPFFTLIARGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTAF------NENIIEN 80 (277)
T ss_dssp ---CEEEEESCTTSHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECGG------GHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecC------ChHHHHH
Confidence 3456766643 22333 335566778899999887642211 1223347999999871 122334
Q ss_pred HHHHhCCCCcEEEE
Q 027062 90 TVLELGPTVPLFGV 103 (229)
Q Consensus 90 ~i~~~~~~~PvlGI 103 (229)
.+.+ .++|+.-+
T Consensus 81 ~l~~--~~iPvV~~ 92 (277)
T 3e61_A 81 TLTD--HHIPFVFI 92 (277)
T ss_dssp HHHH--C-CCEEEG
T ss_pred HHHc--CCCCEEEE
Confidence 4433 35777654
No 261
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=54.69 E-value=35 Score=26.60 Aligned_cols=38 Identities=26% Similarity=0.315 Sum_probs=23.9
Q ss_pred HHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCC
Q 027062 40 LCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (229)
Q Consensus 40 ~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG 77 (229)
+.+.+++.|+.+.+........ +.+...++||||+.+.
T Consensus 23 i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (283)
T 2ioy_A 23 AEEKAKELGYKIIVEDSQNDSSKELSNVEDLIQQKVDVLLINPV 66 (283)
T ss_dssp HHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred HHHHHHhcCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4566777899998876432111 1223347999999753
No 262
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=54.63 E-value=21 Score=25.02 Aligned_cols=34 Identities=9% Similarity=0.005 Sum_probs=27.7
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCc
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDE 58 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~ 58 (229)
+.+|+|+.. +.+-..+++.|.+.|.++.++..+.
T Consensus 7 ~~~viIiG~-G~~G~~la~~L~~~g~~v~vid~~~ 40 (140)
T 3fwz_A 7 CNHALLVGY-GRVGSLLGEKLLASDIPLVVIETSR 40 (140)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred CCCEEEECc-CHHHHHHHHHHHHCCCCEEEEECCH
Confidence 567999986 5677788999999999999887663
No 263
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=54.43 E-value=23 Score=25.93 Aligned_cols=76 Identities=11% Similarity=0.033 Sum_probs=45.9
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEEE
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 103 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlGI 103 (229)
.++|+|+|........+...|+..|+.+....... +.+ ...+|.||+-= ..+...+.+.+.++......|++-+
T Consensus 12 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~---~al-~~~~dlvl~D~--~mp~~~g~l~~~~~~~~~~~~ii~l 85 (196)
T 1qo0_D 12 ELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPP---EAF-DVPVDVVFTSI--FQNRHHDEIAALLAAGTPRTTLVAL 85 (196)
T ss_dssp GCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCC---SSC-SSCCSEEEEEC--CSSTHHHHHHHHHHHSCTTCEEEEE
T ss_pred CCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCch---hhC-CCCCCEEEEeC--CCCccchHHHHHHhccCCCCCEEEE
Confidence 46899999766667778888988999887554321 112 23678776632 1122223334444443367888877
Q ss_pred eh
Q 027062 104 CM 105 (229)
Q Consensus 104 C~ 105 (229)
.-
T Consensus 86 t~ 87 (196)
T 1qo0_D 86 VE 87 (196)
T ss_dssp EC
T ss_pred Ec
Confidence 53
No 264
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=54.39 E-value=15 Score=31.35 Aligned_cols=78 Identities=14% Similarity=0.161 Sum_probs=46.4
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHh--CCCCcEE
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTVPLF 101 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~-~~~~~i~~~--~~~~Pvl 101 (229)
.+|+|||........+...|+..|+.+..........+.+....+|.||+= -..|...+ .+++.+++. ...+||+
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~~~~~dlvllD--~~mp~~~G~~~~~~l~~~~~~~~~pii 79 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPDIILLD--VMMPGMDGFTVCRKLKDDPTTRHIPVV 79 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEE--SCCSSSCHHHHHHHHHHSTTTTTSCEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCCCCEEEEc--CCCCCCCHHHHHHHHhcCcccCCCCEE
Confidence 479999976667778888898889887755432111223333468877762 11222222 345666653 2467887
Q ss_pred EEe
Q 027062 102 GVC 104 (229)
Q Consensus 102 GIC 104 (229)
-+-
T Consensus 80 ~lt 82 (459)
T 1w25_A 80 LIT 82 (459)
T ss_dssp EEE
T ss_pred EEE
Confidence 653
No 265
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=54.36 E-value=7.8 Score=27.42 Aligned_cols=49 Identities=12% Similarity=0.134 Sum_probs=28.4
Q ss_pred ceEEEEE-CCCchhHHH----HHHHHHcCCEEEEEeCCccCHHHHhccC-CCEEEEC
Q 027062 25 NPIIVID-NYDSFTYNL----CQYMGELGYHFEVYRNDELTVEELKRKN-PRGVLIS 75 (229)
Q Consensus 25 ~~ilvid-~~~~~~~~~----~~~l~~~g~~~~v~~~~~~~~~~l~~~~-~dgiii~ 75 (229)
|+|+|+= ...+.+..+ .+.+++.|++++++...+.+..++. + +|.|||.
T Consensus 1 mki~iiy~S~~Gnt~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~l~--~~~d~ii~~ 55 (147)
T 1f4p_A 1 PKALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLF--EGFDLVLLG 55 (147)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHHHTCEEEEEEGGGCCSTTTT--TTCSEEEEE
T ss_pred CeEEEEEECCcCHHHHHHHHHHHHHHhcCCeeEEEehhhCCHHHhc--CcCCEEEEE
Confidence 4666662 223344444 4445667899988876544434444 4 6888774
No 266
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=54.25 E-value=90 Score=25.97 Aligned_cols=51 Identities=10% Similarity=0.059 Sum_probs=31.0
Q ss_pred CceEEEEEC-CCchhHH----HHHHHHHcCCEEEEEeCCccCHH----HHhccCCCEEEECC
Q 027062 24 KNPIIVIDN-YDSFTYN----LCQYMGELGYHFEVYRNDELTVE----ELKRKNPRGVLISP 76 (229)
Q Consensus 24 ~~~ilvid~-~~~~~~~----~~~~l~~~g~~~~v~~~~~~~~~----~l~~~~~dgiii~G 76 (229)
.++|+|+-. ..+.+.. +.+.+++.|++++++...+.+.. ++. ++|+|||..
T Consensus 256 ~~kv~iiy~S~~GnT~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~l~--~~D~iiigs 315 (414)
T 2q9u_A 256 QKKVTVVLDSMYGTTHRMALALLDGARSTGCETVLLEMTSSDITKVALHTY--DSGAVAFAS 315 (414)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGCCHHHHHHHHH--TCSEEEEEC
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEEcCcCCHHHHHHHHH--hCCEEEEEc
Confidence 467877753 2234443 44455567889988876544444 344 569988743
No 267
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=52.64 E-value=33 Score=26.35 Aligned_cols=75 Identities=12% Similarity=0.156 Sum_probs=39.9
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCc--cCHHHHhc-cCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcE
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDE--LTVEELKR-KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL 100 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~--~~~~~l~~-~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~Pv 100 (229)
..+|++|.......+.+.++.+..|.....-++-. .+-..+.. ..+|.+|++. +..+...+.+...+ ++|+
T Consensus 64 ~~~ilfV~tk~~~~~~V~k~A~~~g~~~v~~rw~gG~lTN~~~~~~~~Pdllvv~D----p~~d~~ai~EA~~l--~IP~ 137 (202)
T 3j20_B 64 PQSILAVSVRLYGQKPVKKFGEVTGARAIPGRFLPGTMTNPAVKNFFEPDVLIVTD----PRADHQAMREAVEI--GIPI 137 (202)
T ss_dssp SSCEEEECCCTTTHHHHHHHHHHHSCCCCCSSCCSSSSSCSSSSSCCCCSEEEESC----TTTSHHHHHHHHHH--TCCE
T ss_pred CCeEEEEecChHHHHHHHHHHHHHCCceeCceecCCCcccHhHHhccCCCeEEEeC----CccchHHHHHHHHc--CCCE
Confidence 35677776654455556666666665544322211 00001111 1468888873 33444444555555 4999
Q ss_pred EEEe
Q 027062 101 FGVC 104 (229)
Q Consensus 101 lGIC 104 (229)
.|+|
T Consensus 138 Ial~ 141 (202)
T 3j20_B 138 VALV 141 (202)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9999
No 268
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=52.17 E-value=26 Score=27.57 Aligned_cols=56 Identities=13% Similarity=0.191 Sum_probs=33.7
Q ss_pred CCCceEEEEEC------CC-chhHHHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCC
Q 027062 22 NNKNPIIVIDN------YD-SFTYNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (229)
Q Consensus 22 ~~~~~ilvid~------~~-~~~~~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG 77 (229)
..+..|.||-. +. .+...+.+.+++.|+.+.+...+.... +.+...++||||+.+.
T Consensus 11 ~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 79 (301)
T 3miz_A 11 SRSNTFGIITDYVSTTPYSVDIVRGIQDWANANGKTILIANTGGSSEREVEIWKMFQSHRIDGVLYVTM 79 (301)
T ss_dssp -CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred CCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEecC
Confidence 34456776632 22 233446777888999999887542111 1233347999999875
No 269
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=52.10 E-value=11 Score=25.99 Aligned_cols=65 Identities=12% Similarity=0.156 Sum_probs=37.1
Q ss_pred EEEECCCch-hHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcchHHH-HH-HHhCCCCcEEEEe
Q 027062 28 IVIDNYDSF-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSGISLQ-TV-LELGPTVPLFGVC 104 (229)
Q Consensus 28 lvid~~~~~-~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~~~~~-~i-~~~~~~~PvlGIC 104 (229)
++|-+.... ...|..+|...|+++.- +.+. ..|++|+.-|..+.+ ..|.+ +| .+.+.++|++||=
T Consensus 7 lFISh~~~d~~~~L~~~l~~~~f~~~~--------~~I~--~~~~vIvL~G~~t~~--s~wv~~EI~~A~~~gkpIigV~ 74 (111)
T 1eiw_A 7 LYITEGEVEDYRVFLERLEQSGLEWRP--------ATPE--DADAVIVLAGLWGTR--RDEILGAVDLARKSSKPIITVR 74 (111)
T ss_dssp EEECCCCSHHHHHHHHHHHHHCSCEEE--------CCSS--SCSEEEEEGGGTTTS--HHHHHHHHHHHTTTTCCEEEEC
T ss_pred EEEecccHhHHHHHHHHHhCCCCeeec--------Cccc--cCCEEEEEeCCCcCC--ChHHHHHHHHHHHcCCCEEEEE
Confidence 566554333 34455666555776653 2222 568888887765433 33432 23 3456789999983
No 270
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=52.03 E-value=9.7 Score=29.00 Aligned_cols=79 Identities=10% Similarity=0.138 Sum_probs=45.2
Q ss_pred ceEEEEECCCchhHHHHHHHHHcC-CEEEEEeCCc-cCHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCCCcEE
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELG-YHFEVYRNDE-LTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLF 101 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g-~~~~v~~~~~-~~~~~l~~~~~dgiii~GG~~~~~~~~-~~~~~i~~~~~~~Pvl 101 (229)
++|+|||....+...+...|+..| +.+...-.+. ...+.+....+|.+|+-= ..+...+ .+++.+++.....||+
T Consensus 2 ~~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~~~~~dlvllD~--~lp~~~g~~~~~~lr~~~~~~~ii 79 (225)
T 3c3w_A 2 VKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDV--RLPDGNGIELCRDLLSRMPDLRCL 79 (225)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHHHCCSEEEECS--EETTEEHHHHHHHHHHHCTTCEEE
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhcCCCEEEEeC--CCCCCCHHHHHHHHHHhCCCCcEE
Confidence 589999975556677888888876 6543222221 111223334688887721 1111122 3456666666678988
Q ss_pred EEeh
Q 027062 102 GVCM 105 (229)
Q Consensus 102 GIC~ 105 (229)
-+.-
T Consensus 80 ~lt~ 83 (225)
T 3c3w_A 80 ILTS 83 (225)
T ss_dssp EGGG
T ss_pred EEEC
Confidence 7754
No 271
>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*
Probab=51.98 E-value=29 Score=28.87 Aligned_cols=50 Identities=8% Similarity=-0.004 Sum_probs=29.8
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhcc-CCCEEEEC
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRK-NPRGVLIS 75 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~-~~dgiii~ 75 (229)
|||++.+..+.....+.++++..|+++...+.. .+.+.++.. ++|++++.
T Consensus 2 mki~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~d~li~~ 52 (343)
T 2yq5_A 2 TKIAMYNVSPIEVPYIEDWAKKNDVEIKTTDQA-LTSATVDLAEGCSSVSLK 52 (343)
T ss_dssp CEEEEESCCGGGHHHHHHHHHHHTCEEEEESSC-CSTTGGGGGTTCSEEEEC
T ss_pred ceEEEEecCcccHHHHHHHHHhCCeEEEECCCC-CCHHHHHHhcCCcEEEEc
Confidence 789998865544556677777788888766532 221111111 56777664
No 272
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=51.81 E-value=36 Score=26.33 Aligned_cols=39 Identities=21% Similarity=0.377 Sum_probs=24.3
Q ss_pred HHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCC
Q 027062 39 NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (229)
Q Consensus 39 ~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG 77 (229)
.+.+.+++.|+++.+........ +.+...++||||+.+.
T Consensus 22 gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (271)
T 2dri_A 22 GAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPT 66 (271)
T ss_dssp HHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHTTTTEEEEEECCS
T ss_pred HHHHHHHHcCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 35566777899998876432111 1233347899999763
No 273
>1wu2_A MOEA protein, molybdopterin biosynthesis MOEA protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.30A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1xi8_A
Probab=51.68 E-value=13 Score=31.80 Aligned_cols=45 Identities=16% Similarity=0.002 Sum_probs=24.5
Q ss_pred chhHHHHHHHHHcCCEEEEEeCCccCHHHHh----cc--CCCEEEECCCCC
Q 027062 35 SFTYNLCQYMGELGYHFEVYRNDELTVEELK----RK--NPRGVLISPGPG 79 (229)
Q Consensus 35 ~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~----~~--~~dgiii~GG~~ 79 (229)
++...+..+|++.|+++.....-..+.+.+. +. ++|.||.+||.+
T Consensus 211 sn~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlvittGG~s 261 (396)
T 1wu2_A 211 TNSIMLQGLVEKFFGEPILYGVLPDDESIIKETLEKAKNECDIVLITGGSA 261 (396)
T ss_dssp CHHHHHHHHHHHTTCEEEEEEEECSCHHHHTTHHHHHHHCSEEEECC----
T ss_pred chHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHhhCCCEEEEeCCCC
Confidence 3445688999999998764331111122221 11 579999999865
No 274
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=51.17 E-value=28 Score=27.29 Aligned_cols=76 Identities=14% Similarity=0.149 Sum_probs=36.7
Q ss_pred CCceEEEEEC--CCchhH----HHHHHHHHcCCEEEEE-eCCccC------HHHHhccCCCEEEECCCCCCCCCcchHHH
Q 027062 23 NKNPIIVIDN--YDSFTY----NLCQYMGELGYHFEVY-RNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQ 89 (229)
Q Consensus 23 ~~~~ilvid~--~~~~~~----~~~~~l~~~g~~~~v~-~~~~~~------~~~l~~~~~dgiii~GG~~~~~~~~~~~~ 89 (229)
.+.+|.+|-. .+.|.. .+.+.+++.|+++.+. ...... .+.+...++||||+.+.... ...++
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~----~~~~~ 82 (290)
T 3clk_A 7 SSNVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLIIVYSGSADPEEQKHALLTAIERPVMGILLLSIALT----DDNLQ 82 (290)
T ss_dssp -CCEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEEEEC----------CHHHHHHSSCCSEEEEESCC--------CHH
T ss_pred cCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecccCC----HHHHH
Confidence 3456777732 233433 3456667789999877 432111 12334447999999875322 12223
Q ss_pred HHHHhCCCCcEEEEe
Q 027062 90 TVLELGPTVPLFGVC 104 (229)
Q Consensus 90 ~i~~~~~~~PvlGIC 104 (229)
.+. ..++|++-+.
T Consensus 83 ~l~--~~~iPvV~~~ 95 (290)
T 3clk_A 83 LLQ--SSDVPYCFLS 95 (290)
T ss_dssp HHH--CC--CEEEES
T ss_pred HHH--hCCCCEEEEc
Confidence 332 2457766553
No 275
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=51.07 E-value=44 Score=23.54 Aligned_cols=62 Identities=16% Similarity=0.016 Sum_probs=38.0
Q ss_pred HHHHHHHHHcCCEEEEEeCCccCHHHHh----ccCCCEEEECCCCCCCCC-cchHHHHHHHhCC-CCcE
Q 027062 38 YNLCQYMGELGYHFEVYRNDELTVEELK----RKNPRGVLISPGPGAPQD-SGISLQTVLELGP-TVPL 100 (229)
Q Consensus 38 ~~~~~~l~~~g~~~~v~~~~~~~~~~l~----~~~~dgiii~GG~~~~~~-~~~~~~~i~~~~~-~~Pv 100 (229)
..+...|+..|+++...-.+ .+.+++. +.++|.|.++.-...... ...+++.+++.+. ++||
T Consensus 21 ~~v~~~l~~~G~~Vi~lG~~-~p~e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~g~~~i~v 88 (137)
T 1ccw_A 21 KILDHAFTNAGFNVVNIGVL-SPQELFIKAAIETKADAILVSSLYGQGEIDCKGLRQKCDEAGLEGILL 88 (137)
T ss_dssp HHHHHHHHHTTCEEEEEEEE-ECHHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHHHHTTCTTCEE
T ss_pred HHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHhcCCCEEEEEecCcCcHHHHHHHHHHHHhcCCCCCEE
Confidence 34667889999999977654 5555543 337899999875432111 2234566666542 4665
No 276
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=51.03 E-value=93 Score=24.87 Aligned_cols=87 Identities=15% Similarity=0.104 Sum_probs=49.3
Q ss_pred ccCCCceEEEEECCCchhHHHHHHHHH-c-CCEEEEEe------CCccCHHH-----------HhccCCCEEEECCCCCC
Q 027062 20 SKNNKNPIIVIDNYDSFTYNLCQYMGE-L-GYHFEVYR------NDELTVEE-----------LKRKNPRGVLISPGPGA 80 (229)
Q Consensus 20 ~~~~~~~ilvid~~~~~~~~~~~~l~~-~-g~~~~v~~------~~~~~~~~-----------l~~~~~dgiii~GG~~~ 80 (229)
+++..++|.|.|.+=+=. ...+.+.+ + ..++..+- |...+.++ |...++|.|||.=
T Consensus 20 ~~~~~~~IgvfDSGvGGL-tv~~~i~~~lP~e~~iy~~D~a~~PYG~ks~e~i~~~~~~~~~~L~~~g~d~IVIAC---- 94 (274)
T 3uhf_A 20 FQSNAMKIGVFDSGVGGL-SVLKSLYEARLFDEIIYYGDTARVPYGVKDKDTIIKFCLEALDFFEQFQIDMLIIAC---- 94 (274)
T ss_dssp CCCSCCEEEEEESSSTTH-HHHHHHHHTTCCSEEEEEECTTTCCCTTSCHHHHHHHHHHHHHHHTTSCCSEEEECC----
T ss_pred ccCCCCeEEEEECCCChH-HHHHHHHHHCCCCCEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeC----
Confidence 455678999999743222 23444443 3 44555443 21233333 3344789999853
Q ss_pred CCCcchH-HHHHHHhCCCCcEEEEe-hhHHHHHHH
Q 027062 81 PQDSGIS-LQTVLELGPTVPLFGVC-MGLQCIGEA 113 (229)
Q Consensus 81 ~~~~~~~-~~~i~~~~~~~PvlGIC-~G~Qlla~a 113 (229)
+....+ ++.+++.- .+||+||- -+...+...
T Consensus 95 -NTa~~~al~~lr~~~-~iPvigiiepa~~~a~~~ 127 (274)
T 3uhf_A 95 -NTASAYALDALRAKA-HFPVYGVIDAGVEATIKA 127 (274)
T ss_dssp -HHHHHHSHHHHHHHC-SSCEECSHHHHHHHHHHH
T ss_pred -CChhHHHHHHHHHhc-CCCEEcCCHHHHHHHHHh
Confidence 222222 56666543 59999987 677766665
No 277
>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} SCOP: c.23.13.1 PDB: 2bt4_A* 1v1j_A* 2cjf_A* 1d0i_A 1gu0_A 1gu1_A*
Probab=50.58 E-value=37 Score=24.90 Aligned_cols=39 Identities=15% Similarity=0.264 Sum_probs=23.6
Q ss_pred HHHHHHHcCCEEEEEeCCccC--HHHHhcc--CCCEEEECCCC
Q 027062 40 LCQYMGELGYHFEVYRNDELT--VEELKRK--NPRGVLISPGP 78 (229)
Q Consensus 40 ~~~~l~~~g~~~~v~~~~~~~--~~~l~~~--~~dgiii~GG~ 78 (229)
+.+..++.|++++.+-.+..- .+.+.+. ++|||||=+|.
T Consensus 40 l~~~a~~~g~~v~~~QSN~EGeLId~Ih~a~~~~dgiIINpgA 82 (156)
T 1gtz_A 40 CVKAAAAHGGTVDFRQSNHEGELVDWIHEARLNHCGIVINPAA 82 (156)
T ss_dssp HHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHCSEEEEECTT
T ss_pred HHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEECchh
Confidence 445556679999988765211 1112111 57999997775
No 278
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=50.33 E-value=47 Score=25.08 Aligned_cols=54 Identities=11% Similarity=0.036 Sum_probs=35.6
Q ss_pred CceEEEEECCCc---h-hHHHHHHHHHcCCEEEEEeCCccCHHHHh----ccCCCEEEECCCC
Q 027062 24 KNPIIVIDNYDS---F-TYNLCQYMGELGYHFEVYRNDELTVEELK----RKNPRGVLISPGP 78 (229)
Q Consensus 24 ~~~ilvid~~~~---~-~~~~~~~l~~~g~~~~v~~~~~~~~~~l~----~~~~dgiii~GG~ 78 (229)
+.+|++.--.+. . ...+...|+..|+++.....+ .+.+++. ..++|.|.++...
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~-vp~~~l~~~~~~~~~d~v~lS~~~ 149 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVD-IEPGKFVEAVKKYQPDIVGMSALL 149 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSS-BCHHHHHHHHHHHCCSEEEEECCS
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEEeccc
Confidence 446666632222 2 244667789999999988765 5666543 3489999998753
No 279
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=49.95 E-value=25 Score=27.04 Aligned_cols=94 Identities=13% Similarity=0.089 Sum_probs=51.2
Q ss_pred CCceEEEEECCCc---h-hHHHHHHHHHcCCEEEEEeCCccCHHHHh----ccCCCEEEECCCCCCCCCc---chHHHHH
Q 027062 23 NKNPIIVIDNYDS---F-TYNLCQYMGELGYHFEVYRNDELTVEELK----RKNPRGVLISPGPGAPQDS---GISLQTV 91 (229)
Q Consensus 23 ~~~~ilvid~~~~---~-~~~~~~~l~~~g~~~~v~~~~~~~~~~l~----~~~~dgiii~GG~~~~~~~---~~~~~~i 91 (229)
.+.+|++---.+. . ...+...|+..|+++.....+ .+.+++. +.++|.|.++|+....... ..+++.+
T Consensus 91 ~~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~-vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l 169 (215)
T 3ezx_A 91 EAGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVD-VLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRL 169 (215)
T ss_dssp -CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSS-CCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHH
T ss_pred CCCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCC-CCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHH
Confidence 3456665532211 2 234667789999999988765 6666653 3489999996654433222 2344555
Q ss_pred HHhCC--CCcEE--EEehhHHHHHHHhCCee
Q 027062 92 LELGP--TVPLF--GVCMGLQCIGEAFGGKI 118 (229)
Q Consensus 92 ~~~~~--~~Pvl--GIC~G~Qlla~alGg~v 118 (229)
++.+. ++||+ |-..- |-.+...|+..
T Consensus 170 ~~~~~~~~v~v~vGG~~~~-~~~a~~iGad~ 199 (215)
T 3ezx_A 170 NEEKLRDSVKCMFGGAPVS-DKWIEEIGADA 199 (215)
T ss_dssp HHTTCGGGSEEEEESSSCC-HHHHHHHTCCB
T ss_pred HHcCCCCCCEEEEECCCCC-HHHHHHhCCeE
Confidence 55442 56643 22222 33444455443
No 280
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=49.57 E-value=1.2e+02 Score=26.48 Aligned_cols=34 Identities=15% Similarity=0.107 Sum_probs=26.4
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCC
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND 57 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~ 57 (229)
.++|.||.-+++--..++++|.+.|++|......
T Consensus 19 ~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~ 52 (524)
T 3hn7_A 19 GMHIHILGICGTFMGSLALLARALGHTVTGSDAN 52 (524)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCC
Confidence 4678999886666666888899999998887653
No 281
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=49.51 E-value=32 Score=26.66 Aligned_cols=55 Identities=15% Similarity=0.233 Sum_probs=32.3
Q ss_pred CCCceEEEEEC--CCchh----HHHHHHHHHcCCEEEEEeCCcc-----CHHHHhccCCCEEEECCC
Q 027062 22 NNKNPIIVIDN--YDSFT----YNLCQYMGELGYHFEVYRNDEL-----TVEELKRKNPRGVLISPG 77 (229)
Q Consensus 22 ~~~~~ilvid~--~~~~~----~~~~~~l~~~g~~~~v~~~~~~-----~~~~l~~~~~dgiii~GG 77 (229)
+++.+|.|+-. .+.|. ..+.+.+++.|+.+.+...++. ..+.+...++|||| .+.
T Consensus 3 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI-~~~ 68 (280)
T 3gyb_A 3 LRTQLIAVLIDDYSNPWFIDLIQSLSDVLTPKGYRLSVIDSLTSQAGTDPITSALSMRPDGII-IAQ 68 (280)
T ss_dssp -CCCEEEEEESCTTSGGGHHHHHHHHHHHGGGTCEEEEECSSSSCSSSCHHHHHHTTCCSEEE-EES
T ss_pred CccCEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEEEeCCCchHHHHHHHHHHhCCCCEEE-ecC
Confidence 34566777642 22343 3356667788999998875411 12334445899999 554
No 282
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=49.36 E-value=33 Score=26.88 Aligned_cols=56 Identities=13% Similarity=0.159 Sum_probs=33.0
Q ss_pred CCceEEEEEC--CCchhH----HHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCCC
Q 027062 23 NKNPIIVIDN--YDSFTY----NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGP 78 (229)
Q Consensus 23 ~~~~ilvid~--~~~~~~----~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG~ 78 (229)
.+.+|.+|-. .+.|.. .+.+.+++.|+++.+...+.... +.+...++||||+.+..
T Consensus 19 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 86 (293)
T 2iks_A 19 RTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDAIIVSTSL 86 (293)
T ss_dssp CCCEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred CCcEEEEEeCCCcCcHHHHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 4556777743 223333 35566777899998876542111 12333479999998753
No 283
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=49.34 E-value=92 Score=24.49 Aligned_cols=77 Identities=14% Similarity=0.185 Sum_probs=39.9
Q ss_pred ccCCCceEEEEECCCc-hh----HHHHHHHHHcCC------EEEEEeCCccC------HHHHhccCCCEEEECCCCCCCC
Q 027062 20 SKNNKNPIIVIDNYDS-FT----YNLCQYMGELGY------HFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQ 82 (229)
Q Consensus 20 ~~~~~~~ilvid~~~~-~~----~~~~~~l~~~g~------~~~v~~~~~~~------~~~l~~~~~dgiii~GG~~~~~ 82 (229)
.+.++.+|.||..... |. ..+.+.+++.|+ .+.+...+... .+.+...++||||++|.+.
T Consensus 4 ~~~~t~~IGvi~~~~~p~~~~~~~gi~~~l~~~Gy~~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~~~--- 80 (302)
T 2qh8_A 4 IMAKTAKVAVSQIVEHPALDATRQGLLDGLKAKGYEEGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIATPT--- 80 (302)
T ss_dssp ---CCEEEEEEESSCCHHHHHHHHHHHHHHHHTTCCBTTTEEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEESHHH---
T ss_pred cccCCcEEEEEEeccChhHHHHHHHHHHHHHHcCCCCCCceEEEEecCCCCHHHHHHHHHHHHhCCCCEEEECChHH---
Confidence 3456678888843222 32 346667778898 44444433111 1223344799999986321
Q ss_pred CcchHHHHHHHhCCCCcEEEEe
Q 027062 83 DSGISLQTVLELGPTVPLFGVC 104 (229)
Q Consensus 83 ~~~~~~~~i~~~~~~~PvlGIC 104 (229)
. ..+.....++|+.-+.
T Consensus 81 ----~-~~~~~~~~~iPvV~~~ 97 (302)
T 2qh8_A 81 ----A-QALVSATKTIPIVFTA 97 (302)
T ss_dssp ----H-HHHHHHCSSSCEEEEE
T ss_pred ----H-HHHHhcCCCcCEEEEe
Confidence 1 1122235678877654
No 284
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=49.03 E-value=39 Score=25.93 Aligned_cols=39 Identities=10% Similarity=0.169 Sum_probs=24.8
Q ss_pred HHHHHHHHcCCEEEEEeCC-ccCH-------HHHhccC-CCEEEECCC
Q 027062 39 NLCQYMGELGYHFEVYRND-ELTV-------EELKRKN-PRGVLISPG 77 (229)
Q Consensus 39 ~~~~~l~~~g~~~~v~~~~-~~~~-------~~l~~~~-~dgiii~GG 77 (229)
.+.+.+++.|+++.+...+ ..+. +.+...+ +||||+.+.
T Consensus 21 gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~ 68 (276)
T 3ksm_A 21 GAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPN 68 (276)
T ss_dssp HHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCS
T ss_pred HHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 3566677889999987632 1222 1223336 999999874
No 285
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=48.57 E-value=11 Score=27.52 Aligned_cols=49 Identities=4% Similarity=0.097 Sum_probs=26.6
Q ss_pred ceEEEE-ECCCchhHHH----HHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEEC
Q 027062 25 NPIIVI-DNYDSFTYNL----CQYMGELGYHFEVYRNDELTVEELKRKNPRGVLIS 75 (229)
Q Consensus 25 ~~ilvi-d~~~~~~~~~----~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~ 75 (229)
++++|+ ....+.+..+ .+.+...|+++.++..++.+..++. ++|.|||.
T Consensus 10 ~ki~I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~l~--~~d~ii~g 63 (167)
T 1ykg_A 10 PGITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKFKQIA--SEKLLIVV 63 (167)
T ss_dssp --CEEEEECSSSHHHHHHHHHHHHHHHHTCCCEEEEGGGCCGGGGG--GCSEEEEE
T ss_pred CeEEEEEECCchHHHHHHHHHHHHHHHCCCceEEeehhhCCHHHhc--cCCeEEEE
Confidence 355555 3233444444 4445556888877775544445554 45877763
No 286
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=48.43 E-value=12 Score=31.07 Aligned_cols=78 Identities=17% Similarity=0.281 Sum_probs=43.6
Q ss_pred CceEEEEECCCchhHHHHHHHHHc-CCEEEEEeCCc-cCHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCCCcE
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYRNDE-LTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPL 100 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~-g~~~~v~~~~~-~~~~~l~~~~~dgiii~GG~~~~~~~~-~~~~~i~~~~~~~Pv 100 (229)
+++|+|+|....+...+.+.|+.. |+++...-.+. ...+.+....+|.+++-= ..+...+ .+++.+++... .|+
T Consensus 3 ~~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~~~~pDlVllDi--~mp~~dGlell~~l~~~~p-~pV 79 (349)
T 1a2o_A 3 KIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKFNPDVLTLDV--EMPRMDGLDFLEKLMRLRP-MPV 79 (349)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEEEC--CCSSSCHHHHHHHHHHSSC-CCE
T ss_pred CCEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHhccCCCEEEEEC--CCCCCCHHHHHHHHHhcCC-CcE
Confidence 468999996444567788888875 77744332221 112233344788887631 1122222 34555555443 787
Q ss_pred EEEe
Q 027062 101 FGVC 104 (229)
Q Consensus 101 lGIC 104 (229)
+-+.
T Consensus 80 IvlS 83 (349)
T 1a2o_A 80 VMVS 83 (349)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7765
No 287
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A {Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 2fu3_A 1t3e_A
Probab=48.11 E-value=13 Score=31.95 Aligned_cols=56 Identities=16% Similarity=0.069 Sum_probs=31.4
Q ss_pred chhHHHHHHHHHcCCEEEEEeCCccCHHH----Hhcc--CCCEEEECCCCCCCCCcchHHHHH
Q 027062 35 SFTYNLCQYMGELGYHFEVYRNDELTVEE----LKRK--NPRGVLISPGPGAPQDSGISLQTV 91 (229)
Q Consensus 35 ~~~~~~~~~l~~~g~~~~v~~~~~~~~~~----l~~~--~~dgiii~GG~~~~~~~~~~~~~i 91 (229)
++...+..+|+++|+++..+..-..+.+. +... ++|.||.+||.+ +.+.+...+.+
T Consensus 208 sN~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlVittGG~s-~g~~D~t~~al 269 (419)
T 2fts_A 208 SNRSTLLATIQEHGYPTINLGIVGDNPDDLLNALNEGISRADVIITSGGVS-MGEKDYLKQVL 269 (419)
T ss_dssp CHHHHHHHHHHTTTCCEEEEEEECSSHHHHHHHHHHHHHHCSEEEEESCCS-SSCCHHHHHHH
T ss_pred CchHHHHHHHHHCCCEEEEEeecCCCHHHHHHHHHHHHhcCCEEEEcCCCc-CCCcccHHHHH
Confidence 44566889999999987643211011222 2211 479999999865 33333333333
No 288
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=47.95 E-value=80 Score=24.35 Aligned_cols=57 Identities=18% Similarity=0.185 Sum_probs=32.2
Q ss_pred CCCceEEEEEC--C--CchhH----HHHHHHHHcCCEEEEEeCC-ccCH-------HHHhccCCCEEEECCCC
Q 027062 22 NNKNPIIVIDN--Y--DSFTY----NLCQYMGELGYHFEVYRND-ELTV-------EELKRKNPRGVLISPGP 78 (229)
Q Consensus 22 ~~~~~ilvid~--~--~~~~~----~~~~~l~~~g~~~~v~~~~-~~~~-------~~l~~~~~dgiii~GG~ 78 (229)
.++.+|.++-. . +.|.. .+.+.+++.|+++.+...+ ..+. +.+...++||||+.+..
T Consensus 3 ~~~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 75 (289)
T 3brs_A 3 LKQYYMICIPKVLDDSSDFWSVLVEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAAD 75 (289)
T ss_dssp --CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSC
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 34556777733 2 23433 3456677789999887542 1221 12333479999998743
No 289
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=47.91 E-value=34 Score=26.44 Aligned_cols=54 Identities=11% Similarity=0.305 Sum_probs=31.1
Q ss_pred CCceEEEEECCC-------chhHH----HHHHHHHcCCEEEEEeCCc-cCHH----HHhccCCCEEEECCCCC
Q 027062 23 NKNPIIVIDNYD-------SFTYN----LCQYMGELGYHFEVYRNDE-LTVE----ELKRKNPRGVLISPGPG 79 (229)
Q Consensus 23 ~~~~ilvid~~~-------~~~~~----~~~~l~~~g~~~~v~~~~~-~~~~----~l~~~~~dgiii~GG~~ 79 (229)
.+|+||||.... ++... +.+.+++.|.+++++..++ .+.+ .+. ..|+||+. .|.
T Consensus 24 ~M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL~~~~Dv~~~~~~l~--~aD~iv~~-~P~ 93 (218)
T 3rpe_A 24 AMSNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTVDQGYDIESEIENYL--WADTIIYQ-MPA 93 (218)
T ss_dssp CCCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEGGGCCCHHHHHHHHH--HCSEEEEE-EEC
T ss_pred cCcceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEECCCccCHHHHHHHHH--hCCEEEEE-CCh
Confidence 346899997532 23333 3444556799998887542 2222 233 45888874 443
No 290
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=47.89 E-value=57 Score=26.19 Aligned_cols=57 Identities=12% Similarity=0.099 Sum_probs=33.3
Q ss_pred CCCceEEEEEC--CCchhH----HHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCCC
Q 027062 22 NNKNPIIVIDN--YDSFTY----NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGP 78 (229)
Q Consensus 22 ~~~~~ilvid~--~~~~~~----~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG~ 78 (229)
..+.+|.+|-. .+.|.. .+.+.+++.|+.+.+...+.... +.+...++||||+.+..
T Consensus 56 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 124 (340)
T 1qpz_A 56 NHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSE 124 (340)
T ss_dssp TCCSEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSC
T ss_pred CCCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCC
Confidence 34556777743 223332 35566677899998876532111 12233479999998643
No 291
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=47.26 E-value=4.4 Score=35.67 Aligned_cols=49 Identities=24% Similarity=0.345 Sum_probs=32.2
Q ss_pred HhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEEE-------------ehhHHHHHH
Q 027062 64 LKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV-------------CMGLQCIGE 112 (229)
Q Consensus 64 l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlGI-------------C~G~Qlla~ 112 (229)
+++.++|++|+-||.++......+.+...+.+.++|+.|| |+|+.-.+.
T Consensus 185 l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vVGIPkTIDNDl~gTD~T~GFdTAv~ 246 (487)
T 2hig_A 185 LERLGVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVE 246 (487)
T ss_dssp HHHHTCSEEEEEECHHHHHHHHHHHHHHHHHTCCCEEEEEECCTTSSCCCSSCCTTHHHHHH
T ss_pred HHHcCCCEEEEeCCCchHHHHHHHHHHHHHhCCCceEEeccccccCCCCCCCCCCCHHHHHH
Confidence 4445788888888876544333344444444556888886 999988765
No 292
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=47.09 E-value=70 Score=25.39 Aligned_cols=75 Identities=12% Similarity=0.146 Sum_probs=41.9
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCcc---CHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcE
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL---TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL 100 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~---~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~Pv 100 (229)
+.+|++|.......+.+.++....|...+.-++-.. +...-.-..+|.||++. +..+...+.+... -++|+
T Consensus 70 ~~~vlfVgTk~~~q~~V~k~A~~~g~~~v~~rwlgGtLTN~~t~~f~~PdllvV~D----p~~d~~ai~EA~~--l~IP~ 143 (252)
T 3u5c_A 70 PEDVVAISSRTFGQRAVLKFAAHTGATPIAGRFTPGSFTNYITRSFKEPRLVIVTD----PRSDAQAIKEASY--VNIPV 143 (252)
T ss_dssp GGGEEEEECSHHHHHHHHHHHHHSSCEEEESCCCTTSSSCTTSTTCCCCSEEEESC----TTTTHHHHHHHHT--TTCCE
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHhCCceecCcccCCcccChhhhhccCCceEEEeC----CccchHHHHHHHH--cCCCE
Confidence 456888876444445566777778887765443211 00000111478888874 2333333333333 36999
Q ss_pred EEEe
Q 027062 101 FGVC 104 (229)
Q Consensus 101 lGIC 104 (229)
.|+|
T Consensus 144 Ial~ 147 (252)
T 3u5c_A 144 IALT 147 (252)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9999
No 293
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=46.99 E-value=74 Score=26.00 Aligned_cols=75 Identities=16% Similarity=0.179 Sum_probs=38.3
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCH---HHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcE
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTV---EELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPL 100 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~---~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~Pv 100 (229)
+.+|+||.......+.+.++.+..|...+.-++-...+ ....-..+|.|||+. +..+...+.+...+ ++|+
T Consensus 75 ~~~ILfVgTk~~aq~aV~k~A~~tG~~yV~~RWlgGtLTN~~t~~f~ePdllvV~D----p~~d~qAI~EA~~l--nIPt 148 (305)
T 3iz6_A 75 PQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTD----PRTDHQPIKESALG--NIPT 148 (305)
T ss_dssp SCCEEEECCSHHHHHHHHHHHHHHTCEEECSCCCTTTTTTTTTSCSSCCSEEEESC----TTTTHHHHHHHHHH--TCCE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHhCCccccCcccCCcccCcccccccCCceeEEeC----cccchHHHHHHHHc--CCCE
Confidence 34577776533333445555666676655433311000 000111467788763 33333444444455 4999
Q ss_pred EEEe
Q 027062 101 FGVC 104 (229)
Q Consensus 101 lGIC 104 (229)
+|+|
T Consensus 149 IALv 152 (305)
T 3iz6_A 149 IAFC 152 (305)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9999
No 294
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=46.31 E-value=46 Score=24.31 Aligned_cols=40 Identities=13% Similarity=0.177 Sum_probs=24.1
Q ss_pred HHHHHHHcCCEEEEEeCCccC--HHHHhc--cCCCEEEECCCCC
Q 027062 40 LCQYMGELGYHFEVYRNDELT--VEELKR--KNPRGVLISPGPG 79 (229)
Q Consensus 40 ~~~~l~~~g~~~~v~~~~~~~--~~~l~~--~~~dgiii~GG~~ 79 (229)
+.+...+.|++++.+-.+..- .+.+.+ .++|||||=+|..
T Consensus 41 l~~~a~~~g~~~~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~ 84 (153)
T 3lwz_A 41 LEIQAQGMDVALSHLQSNAEHALIDSIHQARGNTDFILINPAAF 84 (153)
T ss_dssp HHHHHHHTTEEEEEEECSCHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred HHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCceEEEccccc
Confidence 444455689999888765211 111211 2689999987764
No 295
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=46.31 E-value=51 Score=25.81 Aligned_cols=33 Identities=3% Similarity=0.072 Sum_probs=23.0
Q ss_pred CCCceEEEEECCCchhHHHHHHHHHcCCEEEEE
Q 027062 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVY 54 (229)
Q Consensus 22 ~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~ 54 (229)
....+|++|.........+.++.+..|...+.-
T Consensus 62 ~~~~~iLfVgTk~~~~~~V~~~A~~~g~~yv~~ 94 (231)
T 3bbn_B 62 SRGKQFLIVGTKNKAADSVARAAIRARCHYVNK 94 (231)
T ss_dssp TTTCCEEEECCCTTTHHHHHHHHHHHTCEECCS
T ss_pred hCCCEEEEEeCcHHHHHHHHHHHHHhCCccccc
Confidence 345678999876666667777777788766543
No 296
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A*
Probab=46.07 E-value=5.1 Score=35.90 Aligned_cols=49 Identities=18% Similarity=0.352 Sum_probs=29.3
Q ss_pred HhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEEE---------------ehhHHHHHH
Q 027062 64 LKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV---------------CMGLQCIGE 112 (229)
Q Consensus 64 l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlGI---------------C~G~Qlla~ 112 (229)
+.+.++|++|+-||.++......+.+...+.+.++||.|| |+|+.-.+.
T Consensus 162 l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~~~~i~vIGiPkTIDNDl~~t~id~tiGFdTA~~ 225 (555)
T 2f48_A 162 AKENNLNAIIIIGGDDSNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATK 225 (555)
T ss_dssp HHHTTCSEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEEEETTCCCCCSSCCCCEEHHHHHH
T ss_pred HHHcCCCEEEEeCCCcHHHHHHHHHHHHHHhCCCCcEEEeccccCCCCCCCcCCCCCChhHHHH
Confidence 4445778888888876543333333333334445777763 888877654
No 297
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=45.83 E-value=18 Score=29.15 Aligned_cols=56 Identities=7% Similarity=0.108 Sum_probs=32.7
Q ss_pred CCCceEEEEEC--CCchh----HHHHHHHHHcCCEEEEEeCCccCH------HHHhccC--CCEEEECCC
Q 027062 22 NNKNPIIVIDN--YDSFT----YNLCQYMGELGYHFEVYRNDELTV------EELKRKN--PRGVLISPG 77 (229)
Q Consensus 22 ~~~~~ilvid~--~~~~~----~~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~--~dgiii~GG 77 (229)
..+.+|.+|-. .+.|. ..+.+.+++.|+++.+........ +.+...+ +||||+.+.
T Consensus 3 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~ 72 (332)
T 2rjo_A 3 LGQTTLACSFRSLTNPYYTAFNKGAQSFAKSVGLPYVPLTTEGSSEKGIADIRALLQKTGGNLVLNVDPN 72 (332)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHHTCCEEEEECTTCHHHHHHHHHHHHHHTTTCEEEEECCS
T ss_pred CCccEEEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHCCCCCCEEEEeCC
Confidence 44556777643 22333 335566777899998876532111 1222347 999999764
No 298
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=45.30 E-value=46 Score=25.10 Aligned_cols=37 Identities=8% Similarity=-0.059 Sum_probs=26.8
Q ss_pred cCCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCC
Q 027062 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND 57 (229)
Q Consensus 21 ~~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~ 57 (229)
|+.+++|+++-.|......+.+...+.+.++.++..+
T Consensus 1 m~~~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~ 37 (196)
T 2q5c_A 1 MSLSLKIALISQNENLLNLFPKLALEKNFIPITKTAS 37 (196)
T ss_dssp -CCCCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred CCCCCcEEEEEccHHHHHHHHHHHhhhCCceEEEECC
Confidence 4556789999988777777777777777788776543
No 299
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=44.05 E-value=29 Score=28.22 Aligned_cols=54 Identities=19% Similarity=0.218 Sum_probs=30.7
Q ss_pred CceEEEEEC--CCchhH----HHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCC
Q 027062 24 KNPIIVIDN--YDSFTY----NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPG 77 (229)
Q Consensus 24 ~~~ilvid~--~~~~~~----~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG 77 (229)
+.+|.+|-. .+.|.. .+.+.+++.|+.+.+........ +.+...++||||+.+.
T Consensus 66 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 131 (348)
T 3bil_A 66 SNTIGVIVPSLINHYFAAMVTEIQSTASKAGLATIITNSNEDATTMSGSLEFLTSHGVDGIICVPN 131 (348)
T ss_dssp --CEEEEESCSSSHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSCEEECCC
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 456777643 223332 35566777899998876532111 1223347999999874
No 300
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=44.03 E-value=31 Score=27.70 Aligned_cols=56 Identities=14% Similarity=0.181 Sum_probs=32.4
Q ss_pred CCceEEEEEC--CCchhH----HHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCCC
Q 027062 23 NKNPIIVIDN--YDSFTY----NLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGP 78 (229)
Q Consensus 23 ~~~~ilvid~--~~~~~~----~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG~ 78 (229)
.+.+|.+|-. .+.|.. .+.+.+++.|+.+.+...+.... +.+...++||||+.+..
T Consensus 59 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 126 (332)
T 2hsg_A 59 KTTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSNSDQNQDKELHLLNNMLGKQVDGIIFMSGN 126 (332)
T ss_dssp -CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEEEECCSHHHHHHHHHHHTSCCSSCCEEECCSS
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCC
Confidence 3456777642 233433 35566677899998876542111 11223379999998743
No 301
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=43.94 E-value=18 Score=28.93 Aligned_cols=92 Identities=7% Similarity=0.076 Sum_probs=53.0
Q ss_pred CCceEEEEECCCchh---HHHHHHHHHcCCEEEEEeCCc---cCHHHH----hc-cCCCEEEECCCCCCCCCcchHHHHH
Q 027062 23 NKNPIIVIDNYDSFT---YNLCQYMGELGYHFEVYRNDE---LTVEEL----KR-KNPRGVLISPGPGAPQDSGISLQTV 91 (229)
Q Consensus 23 ~~~~ilvid~~~~~~---~~~~~~l~~~g~~~~v~~~~~---~~~~~l----~~-~~~dgiii~GG~~~~~~~~~~~~~i 91 (229)
..++|+|........ ..+.+.|++.|+++..++.-+ .+.+.+ .. .+||.||++...+ ...+.+.+
T Consensus 20 ~g~~vlvtr~~~~~~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~l~~~l~~~~~~d~lifTS~na----V~~~~~~l 95 (286)
T 1jr2_A 20 RHMKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLIFTSPRA----VEAAELCL 95 (286)
T ss_dssp --CEEEEEESSCCCBTTBCHHHHHHHTTTCEEEEEECEEEEECCHHHHHHHHTCGGGCSEEEECCHHH----HHHHHHHH
T ss_pred cCCEEEEEcCCCCCCCCCcHHHHHHHHCCCceEEEeeEEEecCCHHHHHHHHhCcccccEEEEeCHHH----HHHHHHHH
Confidence 467899998642333 678899999999988766321 122221 12 2689999986432 11222221
Q ss_pred HHhC-------------CCCcEEEEehhHHHHHHHhCCee
Q 027062 92 LELG-------------PTVPLFGVCMGLQCIGEAFGGKI 118 (229)
Q Consensus 92 ~~~~-------------~~~PvlGIC~G~Qlla~alGg~v 118 (229)
.+.+ .+++++.|.-+-.-....+|-.+
T Consensus 96 ~~~~~~~~~~~d~~~~l~~~~i~aVG~~Ta~aL~~~G~~~ 135 (286)
T 1jr2_A 96 EQNNKTEVWERSLKEKWNAKSVYVVGNATASLVSKIGLDT 135 (286)
T ss_dssp HHTTCHHHHHHHTHHHHHHSEEEECSHHHHHHHHHTTCCC
T ss_pred HhccccccchhhHHHHhccCcEEEECHHHHHHHHHcCCCc
Confidence 1111 24688887777655556788665
No 302
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=43.91 E-value=83 Score=22.96 Aligned_cols=33 Identities=12% Similarity=0.048 Sum_probs=20.7
Q ss_pred ceEEEEEC-CCchhHH----HHHHHHH-cCCEEEEEeCC
Q 027062 25 NPIIVIDN-YDSFTYN----LCQYMGE-LGYHFEVYRND 57 (229)
Q Consensus 25 ~~ilvid~-~~~~~~~----~~~~l~~-~g~~~~v~~~~ 57 (229)
|+|+||-. ..+.+.. +.+.+++ .|++++++...
T Consensus 2 mkilii~~S~~g~t~~la~~i~~~l~~~~g~~v~~~~l~ 40 (198)
T 3b6i_A 2 AKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVP 40 (198)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHTSTTCEEEEEECC
T ss_pred CeEEEEEeCCCcHHHHHHHHHHHHHhhcCCCEEEEEEcc
Confidence 57888854 2234444 4455566 78999888764
No 303
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A*
Probab=43.86 E-value=61 Score=23.12 Aligned_cols=48 Identities=13% Similarity=0.169 Sum_probs=29.0
Q ss_pred ceEEEE-ECCCchhHHHHHHHHH-cCCEEEEEeCCccCHHHHhccCCCEEEEC
Q 027062 25 NPIIVI-DNYDSFTYNLCQYMGE-LGYHFEVYRNDELTVEELKRKNPRGVLIS 75 (229)
Q Consensus 25 ~~ilvi-d~~~~~~~~~~~~l~~-~g~~~~v~~~~~~~~~~l~~~~~dgiii~ 75 (229)
++++|+ ....+.+..+++.+.+ +|. +.+.+..+.+..++. ++|.|||.
T Consensus 2 ~k~~I~Y~S~tGnT~~~A~~ia~~lg~-~~~~~~~~~~~~~l~--~~d~ii~g 51 (164)
T 2bmv_A 2 GKIGIFFGTDSGNAEAIAEKISKAIGN-AEVVDVAKASKEQFN--SFTKVILV 51 (164)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHCS-EEEEEGGGCCHHHHT--TCSEEEEE
T ss_pred CeEEEEEECCCchHHHHHHHHHHHcCC-cEEEecccCCHhHHh--hCCEEEEE
Confidence 456666 2233456667776644 577 777765544556665 56888773
No 304
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=43.70 E-value=96 Score=23.99 Aligned_cols=55 Identities=11% Similarity=0.259 Sum_probs=30.3
Q ss_pred CCceEEEEE-C--CCchhHH----HHHHHHHc-CCEEEEEeC--CccCH-------HHHhccCCCEEEECCC
Q 027062 23 NKNPIIVID-N--YDSFTYN----LCQYMGEL-GYHFEVYRN--DELTV-------EELKRKNPRGVLISPG 77 (229)
Q Consensus 23 ~~~~ilvid-~--~~~~~~~----~~~~l~~~-g~~~~v~~~--~~~~~-------~~l~~~~~dgiii~GG 77 (229)
++.+|.||- . .+.|... +.+.+++. |+.+.+... +..+. +.+...++||||+.+.
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 78 (304)
T 3gbv_A 7 KKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPT 78 (304)
T ss_dssp CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCS
T ss_pred CcceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 345666552 2 2334433 55666677 788776542 11122 2233448999999874
No 305
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=43.61 E-value=29 Score=27.26 Aligned_cols=53 Identities=9% Similarity=0.100 Sum_probs=30.8
Q ss_pred ceEEEEECC--Cchh----HHHHHHHHHcCCEEEEEeCCccC-----HHHHhccCCCEEEECCC
Q 027062 25 NPIIVIDNY--DSFT----YNLCQYMGELGYHFEVYRNDELT-----VEELKRKNPRGVLISPG 77 (229)
Q Consensus 25 ~~ilvid~~--~~~~----~~~~~~l~~~g~~~~v~~~~~~~-----~~~l~~~~~dgiii~GG 77 (229)
.+|.++-.. +.|. ..+.+.+++.|+++.+....+.. .+.+...++||||+.+.
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 66 (306)
T 8abp_A 3 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLAASGAKGFVICTP 66 (306)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 356666332 2233 33566677789999877653211 11233347999999874
No 306
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=42.91 E-value=79 Score=23.32 Aligned_cols=54 Identities=11% Similarity=0.185 Sum_probs=25.4
Q ss_pred ccCCCceEEEEEC-CCchhHHHHHHHHH-cCCEEEEEeC-CccCH---HHHhccCCCEEEEC
Q 027062 20 SKNNKNPIIVIDN-YDSFTYNLCQYMGE-LGYHFEVYRN-DELTV---EELKRKNPRGVLIS 75 (229)
Q Consensus 20 ~~~~~~~ilvid~-~~~~~~~~~~~l~~-~g~~~~v~~~-~~~~~---~~l~~~~~dgiii~ 75 (229)
+.+.+++|+||-. ..+.+..+++++.+ ++.+..-+.. ++.+. +++. ++|+|||.
T Consensus 2 ~~~~~~kiliiy~S~~GnT~~lA~~ia~~l~~~~~~v~~~~~~~~~~~~~l~--~~D~ii~g 61 (193)
T 3d7n_A 2 TTNSSSNTVVVYHSGYGHTHRMAEAVAEGAEATLHAIDAEGNLSEDGWAALD--AADAIIFG 61 (193)
T ss_dssp ----CCCEEEEECCSSSHHHHHHHHHHHHHTCEEEECCTTSCCCHHHHHHHH--HCSEEEEE
T ss_pred CCCCCCEEEEEEECCChHHHHHHHHHHHHhhhcceEeeecCCCCHhHHHHHH--HCCEEEEE
Confidence 3455678988864 22345556655533 3433322221 12332 3444 56998874
No 307
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=42.84 E-value=45 Score=22.50 Aligned_cols=77 Identities=13% Similarity=0.116 Sum_probs=40.4
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHhCCCCcEEEE
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPLFGV 103 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~-~~~~~i~~~~~~~PvlGI 103 (229)
.+|+|+|........+...|+.. +.+..........+.+....+|.+|+-= ..+...+ .+++.+++.....|++-+
T Consensus 2 ~~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~~dlvl~D~--~lp~~~g~~~~~~l~~~~~~~~ii~~ 78 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILEEEWVQVIICDQ--RMPGRTGVDFLTEVRERWPETVRIII 78 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHHHSCEEEEEEES--CCSSSCHHHHHHHHHHHCTTSEEEEE
T ss_pred CeEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHhcCCCCEEEEeC--CCCCCcHHHHHHHHHHhCCCCcEEEE
Confidence 47999997444556677777654 6655333211111223333577776621 1122222 345666665556787665
Q ss_pred e
Q 027062 104 C 104 (229)
Q Consensus 104 C 104 (229)
.
T Consensus 79 s 79 (139)
T 2jk1_A 79 T 79 (139)
T ss_dssp E
T ss_pred e
Confidence 3
No 308
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=42.36 E-value=56 Score=23.94 Aligned_cols=31 Identities=10% Similarity=0.128 Sum_probs=18.8
Q ss_pred ceEEEEECC---CchhHHHHHH----HHHc------CCEEEEEe
Q 027062 25 NPIIVIDNY---DSFTYNLCQY----MGEL------GYHFEVYR 55 (229)
Q Consensus 25 ~~ilvid~~---~~~~~~~~~~----l~~~------g~~~~v~~ 55 (229)
|+|+||..- ++++..++++ +++. |.+++++.
T Consensus 1 Mkilii~gS~r~~~~t~~la~~~~~~l~~~~~~~~~g~~v~~~d 44 (191)
T 1t0i_A 1 MKVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVD 44 (191)
T ss_dssp CEEEEEECCCCSSCSHHHHHHHHHHHHHTCTTTTTTTCEEEEEC
T ss_pred CeEEEEeCCCCCCCchHHHHHHHHHHHHHhhccCCCCceEEEEe
Confidence 578888642 2455555444 4443 68888775
No 309
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=42.13 E-value=66 Score=27.12 Aligned_cols=84 Identities=14% Similarity=0.166 Sum_probs=51.3
Q ss_pred ccccCCCceEEEEECCCchhHH--HHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCC-------cchHH
Q 027062 18 KKSKNNKNPIIVIDNYDSFTYN--LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD-------SGISL 88 (229)
Q Consensus 18 ~~~~~~~~~ilvid~~~~~~~~--~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~-------~~~~~ 88 (229)
+..+++.-+|.+.+....+.+. .+..|.+.|+++.++... .-..-+...++|.+|+ |...+.. .+-+.
T Consensus 201 A~~~gk~~~V~v~EtRP~~qG~rltA~eL~~~GIpvtlI~Ds-a~~~~M~~~~Vd~ViV--GAD~V~aNG~v~NKiGTy~ 277 (374)
T 2yvk_A 201 AKQKDLGLHIYACETRPVLQGSRLTAWELMQGGIDVTLITDS-MAAHTMKEKQISAVIV--GADRIAKNGDTANKIGTYG 277 (374)
T ss_dssp HHHTTCCCEEEEECCTTTTHHHHTHHHHHHTTTCEEEEECGG-GHHHHHHHTTCCEEEE--CCSEEETTCCEEEETTHHH
T ss_pred HHHcCCEEEEEEeCCCCccccHHHHHHHHHHcCCCEEEEehh-HHHHHhhhcCCCEEEE--CccEEecCCCEEecccHHH
Confidence 3445567788888877666653 577889999999988732 2222233334788876 3333222 23344
Q ss_pred HHHHHhCCCCcEEEEe
Q 027062 89 QTVLELGPTVPLFGVC 104 (229)
Q Consensus 89 ~~i~~~~~~~PvlGIC 104 (229)
-.+.+...++|++-.|
T Consensus 278 lAl~Ak~~~vPfyV~a 293 (374)
T 2yvk_A 278 LAILANAFDIPFFVAA 293 (374)
T ss_dssp HHHHHHHTTCCEEEEC
T ss_pred HHHHHHHcCCCEEEec
Confidence 4444444679999877
No 310
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=42.08 E-value=1.2e+02 Score=23.38 Aligned_cols=76 Identities=8% Similarity=0.154 Sum_probs=40.3
Q ss_pred CCceEEEEEC----CCchh----HHHHHHHHHcCCEEEEEeCCccC------HHHHhccCCCEEEECCCCCCCCCcchHH
Q 027062 23 NKNPIIVIDN----YDSFT----YNLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISL 88 (229)
Q Consensus 23 ~~~~ilvid~----~~~~~----~~~~~~l~~~g~~~~v~~~~~~~------~~~l~~~~~dgiii~GG~~~~~~~~~~~ 88 (229)
.+.+|.++-. .+.|. ..+.+.+++.|+++.+....... .+.+...++||||+.+...+ ...+
T Consensus 18 ~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~----~~~~ 93 (296)
T 3brq_A 18 STQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLS----VDEI 93 (296)
T ss_dssp -CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHHTTCSEEEEECSSSC----HHHH
T ss_pred CCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEecCCCC----hHHH
Confidence 4456777743 22333 33556677789999887643211 11233347999999875321 2233
Q ss_pred HHHHHhCCCCcEEEE
Q 027062 89 QTVLELGPTVPLFGV 103 (229)
Q Consensus 89 ~~i~~~~~~~PvlGI 103 (229)
+.+.+ ..++|++-+
T Consensus 94 ~~l~~-~~~iPvV~~ 107 (296)
T 3brq_A 94 DDIID-AHSQPIMVL 107 (296)
T ss_dssp HHHHH-TCSSCEEEE
T ss_pred HHHHh-cCCCCEEEE
Confidence 33333 145787655
No 311
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=41.56 E-value=1.1e+02 Score=25.31 Aligned_cols=51 Identities=14% Similarity=0.139 Sum_probs=31.1
Q ss_pred CCceEEEEEC-CCchhHH----HHHHHHHcCCEEEEEeCCccCHH----HHhccCCCEEEEC
Q 027062 23 NKNPIIVIDN-YDSFTYN----LCQYMGELGYHFEVYRNDELTVE----ELKRKNPRGVLIS 75 (229)
Q Consensus 23 ~~~~ilvid~-~~~~~~~----~~~~l~~~g~~~~v~~~~~~~~~----~l~~~~~dgiii~ 75 (229)
..++++|+-. ..+.+.. +.+.+++.|++++++...+.+.. ++. ++|+|||.
T Consensus 255 ~~~k~~i~~~S~~gnT~~la~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~l~--~~d~iiig 314 (404)
T 2ohh_A 255 VDERVTVIYDTMHGSTRKMAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDIL--ESGAIALG 314 (404)
T ss_dssp CCSEEEEEECCSSSHHHHHHHHHHHHHHTTTCEEEEEETTTSCHHHHHHHHH--TCSEEEEE
T ss_pred CCCcEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHH--HCCEEEEE
Confidence 3467777753 1224444 44455567889998887655544 344 56998874
No 312
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=41.35 E-value=13 Score=29.12 Aligned_cols=82 Identities=13% Similarity=0.148 Sum_probs=47.6
Q ss_pred cCCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhcc-CCCEEEECCCCCCCCCcc-hHHHHHHHhC--C
Q 027062 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRK-NPRGVLISPGPGAPQDSG-ISLQTVLELG--P 96 (229)
Q Consensus 21 ~~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~-~~dgiii~GG~~~~~~~~-~~~~~i~~~~--~ 96 (229)
++.+.+|+|+|........+...++..|..+..........+.+... .+|.|++ - -..|...+ .+.+.+++.. .
T Consensus 121 ~~~~~~ILivDD~~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~~~~~dlvll-D-~~mP~~dG~~l~~~lr~~~~~~ 198 (259)
T 3luf_A 121 LNQQIEVLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLEQHPAIRLVLV-D-YYMPEIDGISLVRMLRERYSKQ 198 (259)
T ss_dssp HHTTCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCTTEEEEEE-C-SCCSSSCHHHHHHHHHHHCCTT
T ss_pred hcCCCcEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCCCCCEEEE-c-CCCCCCCHHHHHHHHHhccCCC
Confidence 34568999999654456677788888898887655321112223322 2566655 2 12233233 4566777643 4
Q ss_pred CCcEEEEe
Q 027062 97 TVPLFGVC 104 (229)
Q Consensus 97 ~~PvlGIC 104 (229)
.+||+.+.
T Consensus 199 ~~~ii~~s 206 (259)
T 3luf_A 199 QLAIIGIS 206 (259)
T ss_dssp TSEEEEEE
T ss_pred CCeEEEEE
Confidence 68888765
No 313
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=41.34 E-value=93 Score=24.66 Aligned_cols=53 Identities=13% Similarity=0.105 Sum_probs=30.3
Q ss_pred CceEEEEEC--CCchh----HHHHHHHHHcCCEEEEEe-CCccCH-------HHHhccCCCEEEECCC
Q 027062 24 KNPIIVIDN--YDSFT----YNLCQYMGELGYHFEVYR-NDELTV-------EELKRKNPRGVLISPG 77 (229)
Q Consensus 24 ~~~ilvid~--~~~~~----~~~~~~l~~~g~~~~v~~-~~~~~~-------~~l~~~~~dgiii~GG 77 (229)
+.+|.++-. .+.|. ..+.+.+++.|+++.+.. .. .+. +.+...++||||+.+.
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~-~d~~~q~~~i~~li~~~vdgiii~~~ 69 (316)
T 1tjy_A 3 AERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGPTE-PSVSGQVQLVNNFVNQGYDAIIVSAV 69 (316)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEECCCSS-CCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHHhCCEEEEECCCC-CCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 456777632 22232 335666778899988753 22 221 2233347999999763
No 314
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=41.26 E-value=44 Score=26.16 Aligned_cols=62 Identities=15% Similarity=0.123 Sum_probs=33.2
Q ss_pred HHHHHHHHcCC-EEEEEeCCccC------HHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEEEe
Q 027062 39 NLCQYMGELGY-HFEVYRNDELT------VEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 104 (229)
Q Consensus 39 ~~~~~l~~~g~-~~~v~~~~~~~------~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlGIC 104 (229)
.+.+.+++.|+ ++.+....... .+.+...++||||+.+.... .....++.+. ..++|++-+.
T Consensus 23 gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~--~~~~~~~~~~--~~~iPvV~~~ 91 (309)
T 2fvy_A 23 AIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPA--AAGTVIEKAR--GQNVPVVFFN 91 (309)
T ss_dssp HHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSGG--GHHHHHHHHH--TTTCCEEEES
T ss_pred HHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcc--hhHHHHHHHH--HCCCcEEEec
Confidence 35566777898 88877653211 11233347999999764221 1112223332 3468877654
No 315
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=41.02 E-value=55 Score=24.95 Aligned_cols=82 Identities=12% Similarity=0.067 Sum_probs=44.3
Q ss_pred CceEEEEECCCchh--HHHHHHHHHcCCEEEEEeCCccCHHHHhcc-CCCEEEECCCCCCCCCcchHHHHHHHhCCCCcE
Q 027062 24 KNPIIVIDNYDSFT--YNLCQYMGELGYHFEVYRNDELTVEELKRK-NPRGVLISPGPGAPQDSGISLQTVLELGPTVPL 100 (229)
Q Consensus 24 ~~~ilvid~~~~~~--~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~-~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~Pv 100 (229)
..+|.++..+.++. ..+...|...|..+..+...+.-...+... .=|.+|+....|...+.-..++.++++.++.|+
T Consensus 59 a~~I~i~G~G~S~~~A~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~DlvI~iS~SG~t~~~i~~~~~ak~~~~Ga~v 138 (220)
T 3etn_A 59 KGKLVTSGMGKAGQIAMNIATTFCSTGIPSVFLHPSEAQHGDLGILQENDLLLLISNSGKTREIVELTQLAHNLNPGLKF 138 (220)
T ss_dssp CCCEEEECSHHHHHHHHHHHHHHHHTTCCEEECCTTGGGBTGGGGCCTTCEEEEECSSSCCHHHHHHHHHHHHHCTTCEE
T ss_pred CCEEEEEEecHHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhhhccCCCCCEEEEEcCCCCCHHHHHHHHHHHhcCCCCeE
Confidence 67899999866643 346667888999887775332111111111 125555544333321222223333442267999
Q ss_pred EEEeh
Q 027062 101 FGVCM 105 (229)
Q Consensus 101 lGIC~ 105 (229)
++|+-
T Consensus 139 I~IT~ 143 (220)
T 3etn_A 139 IVITG 143 (220)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 99984
No 316
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=41.01 E-value=27 Score=27.24 Aligned_cols=54 Identities=15% Similarity=0.260 Sum_probs=32.2
Q ss_pred CCceEEEEECC--Cchh----HHHHHHHHHcCCE-EEEEeCCccC------HHHHhccCCCEEEECC
Q 027062 23 NKNPIIVIDNY--DSFT----YNLCQYMGELGYH-FEVYRNDELT------VEELKRKNPRGVLISP 76 (229)
Q Consensus 23 ~~~~ilvid~~--~~~~----~~~~~~l~~~g~~-~~v~~~~~~~------~~~l~~~~~dgiii~G 76 (229)
++.+|.|+-.. +.|. ..+.+.+++.|+. +.+....... .+.+...++||||+.+
T Consensus 9 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 9 KSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred CCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc
Confidence 34567777432 2233 3356667788999 7776644211 1223334799999988
No 317
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=40.81 E-value=80 Score=22.61 Aligned_cols=54 Identities=15% Similarity=0.151 Sum_probs=31.8
Q ss_pred CceEEEEEC-CCchhHH----HHHHHHHcCCEEEEEeCCcc-CHHHHhc--cCCCEEEECCCC
Q 027062 24 KNPIIVIDN-YDSFTYN----LCQYMGELGYHFEVYRNDEL-TVEELKR--KNPRGVLISPGP 78 (229)
Q Consensus 24 ~~~ilvid~-~~~~~~~----~~~~l~~~g~~~~v~~~~~~-~~~~l~~--~~~dgiii~GG~ 78 (229)
..+|+|+=. ..+.+.. +.+.+++.|+++.++...+. +..++.. .++|+||| |.|
T Consensus 4 ~~kv~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~d~ii~-Gsp 65 (159)
T 3fni_A 4 ETSIGVFYVSEYGYSDRLAQAIINGITKTGVGVDVVDLGAAVDLQELRELVGRCTGLVI-GMS 65 (159)
T ss_dssp CCEEEEEECTTSTTHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHTEEEEEE-ECC
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHCCCeEEEEECcCcCCHHHHHHHHHhCCEEEE-EcC
Confidence 346777732 2234443 55556677999998887655 5554432 25688876 444
No 318
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=40.62 E-value=15 Score=28.76 Aligned_cols=91 Identities=13% Similarity=0.145 Sum_probs=45.7
Q ss_pred CceEEEEECCCchhHHHHHHHHH-cCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCc-chHHHHHHHhCCCCcEE
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGE-LGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-GISLQTVLELGPTVPLF 101 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~-~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~-~~~~~~i~~~~~~~Pvl 101 (229)
+++|+|||........+.+.|+. .|..+...... .....+....||.+++= -..|... ..+++.+++. +.||+
T Consensus 4 ~~~ILiVdD~~~~~~~l~~~L~~~~~~~v~~~~~~-~~~~~~~~~~~dlvllD--~~mP~~~G~~~~~~lr~~--~~pvi 78 (259)
T 3luf_A 4 KQKILIVEDSMTIRRMLIQAIAQQTGLEIDAFDTL-EGARHCQGDEYVVALVD--LTLPDAPSGEAVKVLLER--GLPVV 78 (259)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHHHCCEEEEESST-GGGTTCCTTTEEEEEEE--SCBTTBTTSHHHHHHHHT--TCCEE
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCeEEEEeChH-HHHHHhhcCCCcEEEEe--CCCCCCCHHHHHHHHHhC--CCCEE
Confidence 46899999644455667777765 47777544322 11112222256766651 1112111 2345555553 47877
Q ss_pred EEeh----hHHHHHHHhCCeee
Q 027062 102 GVCM----GLQCIGEAFGGKIV 119 (229)
Q Consensus 102 GIC~----G~Qlla~alGg~v~ 119 (229)
-+-- ....-+...|+.-+
T Consensus 79 ~lt~~~~~~~~~~a~~~Ga~dy 100 (259)
T 3luf_A 79 ILTADISEDKREAWLEAGVLDY 100 (259)
T ss_dssp EEECC-CHHHHHHHHHTTCCEE
T ss_pred EEEccCCHHHHHHHHHCCCcEE
Confidence 6542 22233344666433
No 319
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=40.25 E-value=42 Score=25.27 Aligned_cols=35 Identities=11% Similarity=0.119 Sum_probs=20.9
Q ss_pred cCCCceEEEEECC---CchhHHHHHHHHH---cCCEEE-EEe
Q 027062 21 KNNKNPIIVIDNY---DSFTYNLCQYMGE---LGYHFE-VYR 55 (229)
Q Consensus 21 ~~~~~~ilvid~~---~~~~~~~~~~l~~---~g~~~~-v~~ 55 (229)
++.+|||++|..- .++...+++++.+ .|++++ ++.
T Consensus 3 ~M~~mkIl~I~GS~r~~s~t~~la~~~~~~~~~g~~v~~~id 44 (199)
T 4hs4_A 3 TTSPLHFVTLLGSLRKASFNAAVARALPEIAPEGIAITPLGS 44 (199)
T ss_dssp --CCEEEEEEECCCSTTCHHHHHHHHHHHHCCTTEEEEECCC
T ss_pred CCCCCEEEEEEcCCCCCChHHHHHHHHHHHccCCCEEEEEEe
Confidence 3446889999742 3566666666644 366777 544
No 320
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=40.21 E-value=73 Score=26.52 Aligned_cols=82 Identities=12% Similarity=0.090 Sum_probs=49.8
Q ss_pred ccCCCceEEEEECCCchhHH--HHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCC-------cchHHHH
Q 027062 20 SKNNKNPIIVIDNYDSFTYN--LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD-------SGISLQT 90 (229)
Q Consensus 20 ~~~~~~~ilvid~~~~~~~~--~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~-------~~~~~~~ 90 (229)
.+++.-+|.+.+....+.+. .+..|.+.|+++.++... .-..-+...++|.+|+ |...+.. .+-+.-.
T Consensus 178 ~~gk~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Ds-a~~~~M~~~~Vd~Viv--GAd~V~aNG~v~NKiGT~~lA 254 (347)
T 1t9k_A 178 ESGKRIRVFADETRPYLQGARLTAWELMKDGIEVYVITDN-MAGWLMKRGLIDAVVV--GADRIALNGDTANKIGTYSLA 254 (347)
T ss_dssp HTTCCEEEEEECCTTTTHHHHTHHHHHHTTTCEEEEECGG-GHHHHHHTTCCSEEEE--CCSEEETTSCEEEETTHHHHH
T ss_pred HCCCeEEEEEeCCCCccccHHHHHHHHHhCCCCEEEEehh-HHHHHhhcCCCCEEEE--CccEEecCCCEEecccHHHHH
Confidence 44556677777776666653 577889999999988732 2222233324788877 3333322 2334444
Q ss_pred HHHhCCCCcEEEEe
Q 027062 91 VLELGPTVPLFGVC 104 (229)
Q Consensus 91 i~~~~~~~PvlGIC 104 (229)
+.+...++|++-.|
T Consensus 255 l~Ak~~~vPfyV~a 268 (347)
T 1t9k_A 255 VLAKRNNIPFYVAA 268 (347)
T ss_dssp HHHHHTTCCEEEEC
T ss_pred HHHHHcCCCEEEec
Confidence 44444679999877
No 321
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=39.65 E-value=68 Score=26.78 Aligned_cols=83 Identities=11% Similarity=0.151 Sum_probs=50.9
Q ss_pred cccCCCceEEEEECCCchhHH--HHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCc------chHHHH
Q 027062 19 KSKNNKNPIIVIDNYDSFTYN--LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS------GISLQT 90 (229)
Q Consensus 19 ~~~~~~~~ilvid~~~~~~~~--~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~------~~~~~~ 90 (229)
..++++-+|.+.+....+.+. .+..|.+.|+++.++... .-..-+...++|.+|+ |...+... +-+.-.
T Consensus 175 ~~~gk~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Ds-a~~~~M~~~~Vd~Viv--GAd~V~aNGv~NKiGT~~lA 251 (351)
T 1t5o_A 175 VEQGKEIRVIACETRPLNQGSRLTCWELMEDGIDVTLITDS-MVGIVMQKGMVDKVIV--GADRIVRDAVFNKIGTYTVS 251 (351)
T ss_dssp HHTTCCCEEEEECCTTTTHHHHTHHHHHHHTTCCEEEECGG-GHHHHHHTTCCSEEEE--CCSEEETTEEEEETTHHHHH
T ss_pred HHCCCEEEEEEeCCCcccccHHHHHHHHHhCCCCEEEEehh-HHHHHhhcCCCCEEEE--CccchhhcCcccccCHHHHH
Confidence 445567788888876666653 577889999999988732 2222233324788877 33333222 333344
Q ss_pred HHHhCCCCcEEEEe
Q 027062 91 VLELGPTVPLFGVC 104 (229)
Q Consensus 91 i~~~~~~~PvlGIC 104 (229)
+.+...++|++-.|
T Consensus 252 l~Ak~~~vPfyV~a 265 (351)
T 1t5o_A 252 VVAKHHNIPFYVAA 265 (351)
T ss_dssp HHHHHTTCCEEEEC
T ss_pred HHHHHcCCCEEEeC
Confidence 44444679999877
No 322
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=39.63 E-value=1.1e+02 Score=25.50 Aligned_cols=54 Identities=11% Similarity=0.337 Sum_probs=29.3
Q ss_pred cCCCceEEEEECC-CchhH----HHHHHHHHcCCEEEEEeCCccC--HHHHhccCCCEEEE
Q 027062 21 KNNKNPIIVIDNY-DSFTY----NLCQYMGELGYHFEVYRNDELT--VEELKRKNPRGVLI 74 (229)
Q Consensus 21 ~~~~~~ilvid~~-~~~~~----~~~~~l~~~g~~~~v~~~~~~~--~~~l~~~~~dgiii 74 (229)
.+++..|.||-.. +.|.. .+.+.+++.|+.+.+...+... .+.+...++||||+
T Consensus 22 ~~~s~~Igvv~~~~~~f~~~l~~gi~~~a~~~g~~~~i~~~~~~~~~i~~l~~~~vDGiIi 82 (412)
T 4fe7_A 22 FTKRHRITLLFNANKAYDRQVVEGVGEYLQASQSEWDIFIEEDFRARIDKIKDWLGDGVIA 82 (412)
T ss_dssp CCCCEEEEEECCTTSHHHHHHHHHHHHHHHHHTCCEEEEECC-CC--------CCCSEEEE
T ss_pred CCCCceEEEEeCCcchhhHHHHHHHHHHHHhcCCCeEEEecCCccchhhhHhcCCCCEEEE
Confidence 3445567666432 22332 3556667789999887654221 23344457999999
No 323
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=39.52 E-value=8.2 Score=30.69 Aligned_cols=34 Identities=18% Similarity=0.340 Sum_probs=24.4
Q ss_pred CCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEEEehhH
Q 027062 68 NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGL 107 (229)
Q Consensus 68 ~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlGIC~G~ 107 (229)
++|.+|..||.|+ ++..++.+..++|++||=.|.
T Consensus 41 ~~D~vv~~GGDGT------ll~~a~~~~~~~PilGIn~G~ 74 (258)
T 1yt5_A 41 TADLIVVVGGDGT------VLKAAKKAADGTPMVGFKAGR 74 (258)
T ss_dssp CCSEEEEEECHHH------HHHHHTTBCTTCEEEEEESSS
T ss_pred CCCEEEEEeCcHH------HHHHHHHhCCCCCEEEEECCC
Confidence 6899999999763 445444432279999998774
No 324
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=39.52 E-value=29 Score=27.41 Aligned_cols=75 Identities=13% Similarity=0.204 Sum_probs=36.3
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEE-EEeCCcc---CHHHHhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCc
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFE-VYRNDEL---TVEELKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVP 99 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~-v~~~~~~---~~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~P 99 (229)
+.+|++|.........+.++.+..|.... .-++-.. +...-.-..+|.||++. +..+...+.+... -++|
T Consensus 66 ~~~iLfVgtk~~~~~~V~~~A~~~g~~yv~~~RWlgG~LTN~~t~~~~~PdlliV~D----p~~e~~ai~EA~~--l~IP 139 (241)
T 2xzm_B 66 PEDVMVVCSRIYGQRAAIKFAGYTHCKSTSSSRWTPGTLTNYQTLKYEEPRVLIVTD----PRSDFQAIKEASY--VNIP 139 (241)
T ss_dssp GGGEEEECCSHHHHHHHHHHHHHHTCBCCCCSSCCTTTTTCTTCTTCCCCSEEEESC----TTTTHHHHHHHTT--TTCC
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCCEEeccccccCCcccCccccccCCCCEEEEEC----CCcchHHHHHHHH--hCCC
Confidence 45677776533333445555566666554 2222110 00000011467777763 2222223333333 4699
Q ss_pred EEEEe
Q 027062 100 LFGVC 104 (229)
Q Consensus 100 vlGIC 104 (229)
+.|+|
T Consensus 140 vIalv 144 (241)
T 2xzm_B 140 VIALC 144 (241)
T ss_dssp EEECC
T ss_pred EEEEe
Confidence 99999
No 325
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=39.43 E-value=51 Score=24.53 Aligned_cols=40 Identities=18% Similarity=0.259 Sum_probs=24.0
Q ss_pred HHHHHHHcCCEEEEEeCCccC--HHHHhc--cCCCEEEECCCCC
Q 027062 40 LCQYMGELGYHFEVYRNDELT--VEELKR--KNPRGVLISPGPG 79 (229)
Q Consensus 40 ~~~~l~~~g~~~~v~~~~~~~--~~~l~~--~~~dgiii~GG~~ 79 (229)
+.+...+.|++++.+-.+..- .+.+.+ .++|||||=+|..
T Consensus 62 l~~~a~~~G~~l~~~QSN~EGeLId~Ih~A~~~~dgIIINPgAy 105 (172)
T 3n8k_A 62 IEREAAELGLKAVVRQSDSEAQLLDWIHQAADAAEPVILNAGGL 105 (172)
T ss_dssp HHHHHHHTTCEEEEEECSCHHHHHHHHHHHHHHTCCEEEECGGG
T ss_pred HHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCcEEEECcchh
Confidence 445556689999988765211 111111 1579999987754
No 326
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=38.49 E-value=5.5 Score=34.36 Aligned_cols=50 Identities=16% Similarity=0.175 Sum_probs=32.5
Q ss_pred HhccCCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEEEE-------------ehhHHHHHHH
Q 027062 64 LKRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV-------------CMGLQCIGEA 113 (229)
Q Consensus 64 l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PvlGI-------------C~G~Qlla~a 113 (229)
+++.++|++|+-||.++......+.+...+.+.++|+.|| |+|+.-.+..
T Consensus 100 l~~~~Id~Lv~IGGdgS~~~A~~L~~~~~~~g~~i~vIGiPkTIDNDl~~tD~t~GFdTA~~~ 162 (419)
T 3hno_A 100 FKAHDIGYFFYNGGGDSADTCLKVSQLSGTLGYPIQAIHVPKTVDNDLPITDCCPGFGSVAKY 162 (419)
T ss_dssp HHHTTEEEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEECCTTCCCSSSSSCTTHHHHHHH
T ss_pred HHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEecccccCCCcCCCCCCCchHHHHH
Confidence 4445778888888876543333333333344456899998 9999987653
No 327
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=38.15 E-value=1.3e+02 Score=22.93 Aligned_cols=33 Identities=12% Similarity=0.092 Sum_probs=20.6
Q ss_pred ceEEEEECC---CchhHHHHH----HHHHc-CCEEEEEeCC
Q 027062 25 NPIIVIDNY---DSFTYNLCQ----YMGEL-GYHFEVYRND 57 (229)
Q Consensus 25 ~~ilvid~~---~~~~~~~~~----~l~~~-g~~~~v~~~~ 57 (229)
|+|+||..- .+.+..+++ .+++. |.+++++...
T Consensus 2 mkIliI~gS~r~~s~T~~la~~i~~~l~~~~g~~v~~~dl~ 42 (242)
T 1sqs_A 2 NKIFIYAGVRNHNSKTLEYTKRLSSIISSRNNVDISFRTPF 42 (242)
T ss_dssp CEEEEEECCCCTTCHHHHHHHHHHHHHHHHSCCEEEEECTT
T ss_pred CeEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 578998753 245554444 44455 9999887643
No 328
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=38.00 E-value=1.4e+02 Score=23.95 Aligned_cols=38 Identities=13% Similarity=0.227 Sum_probs=24.1
Q ss_pred CCCceEEEEECC---CchhHHH----HHHHHHcCCEEEEEeCCcc
Q 027062 22 NNKNPIIVIDNY---DSFTYNL----CQYMGELGYHFEVYRNDEL 59 (229)
Q Consensus 22 ~~~~~ilvid~~---~~~~~~~----~~~l~~~g~~~~v~~~~~~ 59 (229)
..+|+|++|..- .+++..+ .+.+++.|++++++...+.
T Consensus 56 ~~~mKILiI~GS~R~~S~T~~La~~~~~~l~~~G~eveiidL~dl 100 (279)
T 2fzv_A 56 APPVRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDPSDL 100 (279)
T ss_dssp CSCCEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTTC
T ss_pred CCCCEEEEEEeCCCCCCHHHHHHHHHHHHHhhCCCEEEEEehhcC
Confidence 346789999642 2455444 4445667999998875433
No 329
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=37.94 E-value=1.7e+02 Score=24.89 Aligned_cols=33 Identities=15% Similarity=0.192 Sum_probs=25.3
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEEEEeC
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN 56 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~ 56 (229)
..++|+||..+.+-. +.+++|.+.|++|.....
T Consensus 8 ~~k~v~viG~G~sG~-s~A~~l~~~G~~V~~~D~ 40 (451)
T 3lk7_A 8 ENKKVLVLGLARSGE-AAARLLAKLGAIVTVNDG 40 (451)
T ss_dssp TTCEEEEECCTTTHH-HHHHHHHHTTCEEEEEES
T ss_pred CCCEEEEEeeCHHHH-HHHHHHHhCCCEEEEEeC
Confidence 457899999854433 458899999999998865
No 330
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=37.73 E-value=47 Score=26.62 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=25.5
Q ss_pred eEEEEECCCchhHHHHHHHHHcCCEEEEEeC
Q 027062 26 PIIVIDNYDSFTYNLCQYMGELGYHFEVYRN 56 (229)
Q Consensus 26 ~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~ 56 (229)
..|||++.+.-...+.+.++.+|++|.+...
T Consensus 45 ~~LIinn~~~D~~~L~~~f~~LgF~V~~~~d 75 (272)
T 3h11_A 45 ICLIIDCIGNETELLRDTFTSLGYEVQKFLH 75 (272)
T ss_dssp EEEEEESSCCCCSHHHHHHHHHTEEEEEEES
T ss_pred EEEEECCchHHHHHHHHHHHHCCCEEEEeeC
Confidence 4677888665667899999999999998874
No 331
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=36.83 E-value=85 Score=25.58 Aligned_cols=79 Identities=13% Similarity=0.130 Sum_probs=47.5
Q ss_pred CCceEEEEECCCchh----HHHHHHHHHcCCEEEEEe-C--CccC----HHHHhccCCCEEEECCCCCCCCCcchHHHHH
Q 027062 23 NKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVYR-N--DELT----VEELKRKNPRGVLISPGPGAPQDSGISLQTV 91 (229)
Q Consensus 23 ~~~~ilvid~~~~~~----~~~~~~l~~~g~~~~v~~-~--~~~~----~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i 91 (229)
...+|++|-..+.+. ..+.+.+++.|.++.... + ...+ ...+...++|+|++.+.. .+...+++.+
T Consensus 142 g~~~iaii~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~~dav~~~~~~---~~a~~~~~~~ 218 (392)
T 3lkb_A 142 KGAKVALVVHPSPFGRAPVEDARKAARELGLQIVDVQEVGSGNLDNTALLKRFEQAGVEYVVHQNVA---GPVANILKDA 218 (392)
T ss_dssp TTCEEEEEECSSHHHHTTHHHHHHHHHHHTCEEEEEEECCTTCCCCHHHHHHHHHTTCCEEEEESCH---HHHHHHHHHH
T ss_pred CCCEEEEEEeCCchhhhHHHHHHHHHHHcCCeEEEEEeeCCCCcCHHHHHHHHHhcCCCEEEEecCc---chHHHHHHHH
Confidence 457888886544432 347778888999876432 1 1111 233444578999986532 1122345666
Q ss_pred HHhCCCCcEEEEe
Q 027062 92 LELGPTVPLFGVC 104 (229)
Q Consensus 92 ~~~~~~~PvlGIC 104 (229)
++.+-+.|++|.-
T Consensus 219 ~~~g~~~~~~~~~ 231 (392)
T 3lkb_A 219 KRLGLKMRHLGAH 231 (392)
T ss_dssp HHTTCCCEEEECG
T ss_pred HHcCCCceEEEec
Confidence 6777678999873
No 332
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=36.67 E-value=54 Score=21.36 Aligned_cols=33 Identities=15% Similarity=0.214 Sum_probs=24.0
Q ss_pred CceEEEEECCCchhHHHHHHHHHcC-CEEEEEeCC
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELG-YHFEVYRND 57 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g-~~~~v~~~~ 57 (229)
+++|+|+.. +..-..+.+.|...| .++.++..+
T Consensus 5 ~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~ 38 (118)
T 3ic5_A 5 RWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHD 38 (118)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESC
T ss_pred cCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCC
Confidence 468999986 555567888888888 777666543
No 333
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=36.33 E-value=83 Score=26.60 Aligned_cols=82 Identities=7% Similarity=-0.049 Sum_probs=49.3
Q ss_pred ccCCCceEEEEECCCchhHH--HHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCc-------chHHHH
Q 027062 20 SKNNKNPIIVIDNYDSFTYN--LCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-------GISLQT 90 (229)
Q Consensus 20 ~~~~~~~ilvid~~~~~~~~--~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~-------~~~~~~ 90 (229)
.+++.-+|.+.+....+.+. .+..|.+.|+++.++... .-..-+...++|.||+ |...+... +-+.-.
T Consensus 207 ~~gk~~~V~v~EtRP~~qGarltA~eL~~~GIpvtlI~Ds-a~~~~M~~~~Vd~ViV--GAD~V~aNG~v~NKiGTy~lA 283 (383)
T 2a0u_A 207 YDGKLERVYACETRPWNQGARLTVYECVQEDIPCTLICDG-AASSLMLNRKIDAVVV--GADRICQNGDTANKIGTYNLA 283 (383)
T ss_dssp HTTCEEEEEEECCTTTTHHHHTHHHHHHHTTCCEEEECGG-GHHHHHHHSCCCEEEE--CCSEECTTCCEEEETTHHHHH
T ss_pred HcCCeEEEEEeCCCCccchHHHHHHHHHHcCCCEEEEehh-HHHHHhhcCCCCEEEE--CccEEecCCCEeecccHHHHH
Confidence 34455677777766666653 577788999999988732 2222233334788877 33333222 334444
Q ss_pred HHHhCCCCcEEEEe
Q 027062 91 VLELGPTVPLFGVC 104 (229)
Q Consensus 91 i~~~~~~~PvlGIC 104 (229)
+.+...++|++-.|
T Consensus 284 l~Ak~~~vPfyV~a 297 (383)
T 2a0u_A 284 VSAKFHGVKLYVAA 297 (383)
T ss_dssp HHHHHTTCCEEEEC
T ss_pred HHHHHcCCCEEEeC
Confidence 44444679999877
No 334
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=36.33 E-value=95 Score=24.65 Aligned_cols=78 Identities=15% Similarity=0.152 Sum_probs=39.4
Q ss_pred CCCceEEEEECCCchhHHHHHHHHHc-CCEEEEEe------CCccCHHH-----------HhccCCCEEEECCCCCCCCC
Q 027062 22 NNKNPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYR------NDELTVEE-----------LKRKNPRGVLISPGPGAPQD 83 (229)
Q Consensus 22 ~~~~~ilvid~~~~~~~~~~~~l~~~-g~~~~v~~------~~~~~~~~-----------l~~~~~dgiii~GG~~~~~~ 83 (229)
+...+|.|.|.+=+=...+....+.. +.++..+- |-..+.++ |...++|.|+|.=. .
T Consensus 5 ~~~~pIgvfDSGvGGLtv~~~i~~~lp~~~~iy~~D~a~~PYG~~~~~~i~~~~~~~~~~L~~~g~~~iVIACN-----T 79 (268)
T 3out_A 5 LDNRPIGVFDSGIGGLTIVKNLMSILPNEDIIYFGDIARIPYGTKSRATIQKFAAQTAKFLIDQEVKAIIIACN-----T 79 (268)
T ss_dssp CTTSCEEEEESSSTTHHHHHHHHHHCTTCCEEEEECTTTCCCTTSCHHHHHHHHHHHHHHHHHTTCSEEEECCH-----H
T ss_pred CCCCcEEEEECCCChHHHHHHHHHHCCCCcEEEecCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCC-----C
Confidence 34457999997433222232333333 34454442 11122222 34447899998632 1
Q ss_pred cch-HHHHHHHhCCCCcEEEEe
Q 027062 84 SGI-SLQTVLELGPTVPLFGVC 104 (229)
Q Consensus 84 ~~~-~~~~i~~~~~~~PvlGIC 104 (229)
... +++.+++.-..+||+||.
T Consensus 80 a~~~al~~lr~~~~~iPvigii 101 (268)
T 3out_A 80 ISAIAKDIVQEIAKAIPVIDVI 101 (268)
T ss_dssp HHHHHHHHHHHHHTTSCEEEHH
T ss_pred hHHHHHHHHHHhcCCCCEEecc
Confidence 222 446666532249999974
No 335
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=36.28 E-value=64 Score=24.31 Aligned_cols=36 Identities=8% Similarity=-0.020 Sum_probs=24.3
Q ss_pred cCCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeC
Q 027062 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN 56 (229)
Q Consensus 21 ~~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~ 56 (229)
.-..|+|+|....+..-..+++.|.+.|.++..+.-
T Consensus 18 ~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R 53 (236)
T 3e8x_A 18 YFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVR 53 (236)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEEC
Confidence 334678888886444456688888889998877653
No 336
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=36.14 E-value=1.3e+02 Score=26.24 Aligned_cols=58 Identities=17% Similarity=0.211 Sum_probs=36.4
Q ss_pred HhccCCCEEEECCCCCCCCCc--------chH--HHHHHH-h-CCCCcEE---EEehhHHHH-HHHhCCeeeec
Q 027062 64 LKRKNPRGVLISPGPGAPQDS--------GIS--LQTVLE-L-GPTVPLF---GVCMGLQCI-GEAFGGKIVRS 121 (229)
Q Consensus 64 l~~~~~dgiii~GG~~~~~~~--------~~~--~~~i~~-~-~~~~Pvl---GIC~G~Qll-a~alGg~v~~~ 121 (229)
+.+...|+|++..|+++.... +.+ +..+.+ . ..++||+ ||..+-.+. +.++|+...-.
T Consensus 314 ~~~aGad~i~vg~g~gsi~~~~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~~V~v 387 (511)
T 3usb_A 314 LIEAGANVVKVGIGPGSICTTRVVAGVGVPQLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVML 387 (511)
T ss_dssp HHHHTCSEEEECSSCSTTCCHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHhCCCEEEECCCCccccccccccCCCCCcHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCchhhee
Confidence 344478999997777764321 111 222222 1 2369999 898888887 67888765544
No 337
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=36.09 E-value=1.1e+02 Score=23.54 Aligned_cols=56 Identities=14% Similarity=0.264 Sum_probs=36.4
Q ss_pred CceEEEEECCCchh-HHHHHHHHHcCCEEEEEeCCccCHHHHh---------------ccCCCEEEECCCCCCC
Q 027062 24 KNPIIVIDNYDSFT-YNLCQYMGELGYHFEVYRNDELTVEELK---------------RKNPRGVLISPGPGAP 81 (229)
Q Consensus 24 ~~~ilvid~~~~~~-~~~~~~l~~~g~~~~v~~~~~~~~~~l~---------------~~~~dgiii~GG~~~~ 81 (229)
+|+|+|... ++. ..+++.|.+.|.++..+.-.......+. ..++|.||-+.|....
T Consensus 5 ~~~ilVtGa--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~d~vi~~a~~~~~ 76 (286)
T 3ius_A 5 TGTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPSLDGVTHLLISTAPDSG 76 (286)
T ss_dssp CCEEEEETC--CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCCCTTCCEEEECCCCBTT
T ss_pred cCcEEEECC--cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccccCCCCEEEECCCcccc
Confidence 368999984 554 5688889888999887654322222211 1247889888876544
No 338
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=36.08 E-value=48 Score=22.46 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=24.8
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCC
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND 57 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~ 57 (229)
.|+|+|+.. +..-..+.+.|.+.|.++.++..+
T Consensus 4 ~m~i~IiG~-G~iG~~~a~~L~~~g~~v~~~d~~ 36 (140)
T 1lss_A 4 GMYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDID 36 (140)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECC
Confidence 468999975 455567888888899998887654
No 339
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=36.00 E-value=38 Score=28.84 Aligned_cols=33 Identities=15% Similarity=0.133 Sum_probs=27.4
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCC
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND 57 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~ 57 (229)
+++|+|+.+ +.+-..+++.|.+.|+++.++..+
T Consensus 4 ~~~viIiG~-Gr~G~~va~~L~~~g~~vvvId~d 36 (413)
T 3l9w_A 4 GMRVIIAGF-GRFGQITGRLLLSSGVKMVVLDHD 36 (413)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCeEEEECC-CHHHHHHHHHHHHCCCCEEEEECC
Confidence 467899985 567788999999999999988765
No 340
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=35.86 E-value=1.2e+02 Score=21.90 Aligned_cols=31 Identities=16% Similarity=0.139 Sum_probs=18.0
Q ss_pred CCceEEEEEC-CCchhHHHHHHHH-HcCCEEEE
Q 027062 23 NKNPIIVIDN-YDSFTYNLCQYMG-ELGYHFEV 53 (229)
Q Consensus 23 ~~~~ilvid~-~~~~~~~~~~~l~-~~g~~~~v 53 (229)
+.|+++|+=+ ..+.+..+++.+. ..|.++.-
T Consensus 12 ~~mkilIvY~S~tGnT~~vA~~Ia~~l~~d~~~ 44 (171)
T 4ici_A 12 SNSKILVAYFSATGTTARAAEKLGAAVGGDLYP 44 (171)
T ss_dssp -CCCEEEEECCSSSHHHHHHHHHHHHHTCEEEE
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHhCCCeEE
Confidence 4577888843 2335666777664 35766543
No 341
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=35.53 E-value=68 Score=24.79 Aligned_cols=98 Identities=14% Similarity=0.215 Sum_probs=52.0
Q ss_pred ccCCCceEEEE-ECCCchhHHHHHHHH---HcCCEEEEEeCCccCHHHHhccCCCEEEECCC---CCCCCCc-chHHHHH
Q 027062 20 SKNNKNPIIVI-DNYDSFTYNLCQYMG---ELGYHFEVYRNDELTVEELKRKNPRGVLISPG---PGAPQDS-GISLQTV 91 (229)
Q Consensus 20 ~~~~~~~ilvi-d~~~~~~~~~~~~l~---~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG---~~~~~~~-~~~~~~i 91 (229)
.+..+++|+|+ ....+.+..+++.+. +.|+.+.+...++.+.+++. +++.+||.-. .|.+.+. ..+.+.+
T Consensus 36 ~~~~~~kv~IlYgS~tGnte~~A~~La~~l~~g~~v~v~~l~~~~~~~l~--~~~~vI~~tsTyG~Ge~Pdna~~F~~~L 113 (219)
T 3hr4_A 36 TMASRVRVTILFATETGKSEALAWDLGALFSCAFNPKVVCMDKYRLSCLE--EERLLLVVTSTFGNGDCPGNGEKLKKSL 113 (219)
T ss_dssp HHHTSCEEEEEEECSSSHHHHHHHHHHHHHTTTSEEEEEEGGGCCGGGGG--TCSEEEEEEECBTTTBCCGGGHHHHHHH
T ss_pred HHhcCCcEEEEEECCchHHHHHHHHHHHHHHcCCCeEEEEcccCCHhHhc--cCCeEEEEEeccCCCcCCHHHHHHHHHH
Confidence 34455666666 333344554544443 35888888876655556665 3466655322 2333332 2355555
Q ss_pred HHhC-----CCCcEEEE--------ehhHHHHHH---HhCCeee
Q 027062 92 LELG-----PTVPLFGV--------CMGLQCIGE---AFGGKIV 119 (229)
Q Consensus 92 ~~~~-----~~~PvlGI--------C~G~Qlla~---alGg~v~ 119 (229)
.... ...=|||. |...-.|.. .+|++..
T Consensus 114 ~~~~~~l~~~~~aVfGlGdssY~~F~~a~k~ld~~L~~lGa~~l 157 (219)
T 3hr4_A 114 FMLKELNNKFRYAVFGLGSSMYPRFCAFAHDIDQKLSHLGASQL 157 (219)
T ss_dssp HHCCCCSSCCEEEEEEEECTTSSSTTHHHHHHHHHHHHHTCEES
T ss_pred HhcchhhcCCEEEEEeCCCcchHHHhHHHHHHHHHHHHCCCCEe
Confidence 5431 23457775 666665554 3677654
No 342
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=35.34 E-value=48 Score=25.91 Aligned_cols=54 Identities=13% Similarity=0.150 Sum_probs=29.9
Q ss_pred CceEEEEEC--CCchh----HHHHHHHHHcCCEEEEEeCCccCH-------HHHhccCCCEEEECCC
Q 027062 24 KNPIIVIDN--YDSFT----YNLCQYMGELGYHFEVYRNDELTV-------EELKRKNPRGVLISPG 77 (229)
Q Consensus 24 ~~~ilvid~--~~~~~----~~~~~~l~~~g~~~~v~~~~~~~~-------~~l~~~~~dgiii~GG 77 (229)
+.+|.++-. .+.|. ..+.+++++.|+++.++.....+. +.+...++||||+.+.
T Consensus 4 ~~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 70 (303)
T 3d02_A 4 EKTVVNISKVDGMPWFNRMGEGVVQAGKEFNLNASQVGPSSTDAPQQVKIIEDLIARKVDAITIVPN 70 (303)
T ss_dssp CEEEEEECSCSSCHHHHHHHHHHHHHHHHTTEEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred ceEEEEEeccCCChHHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 456777632 22333 235566777899887543221221 1223347999999764
No 343
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}
Probab=35.26 E-value=61 Score=25.85 Aligned_cols=34 Identities=6% Similarity=0.158 Sum_probs=25.1
Q ss_pred CCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeC
Q 027062 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN 56 (229)
Q Consensus 22 ~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~ 56 (229)
..+|+|+|++. +.....+.+.|.+.|+++.+...
T Consensus 3 ~~~m~i~v~~~-~~~~~~~~~~L~~~g~~v~~~~~ 36 (293)
T 3d4o_A 3 LTGKHVVIIGG-DARQLEIIRKLSTFDAKISLVGF 36 (293)
T ss_dssp CTTCEEEEECB-CHHHHHHHHHHHHTTCEEEEESC
T ss_pred ccCcEEEEECC-CHHHHHHHHHHHhCCCEEEEecc
Confidence 45678999974 45555677888899999987654
No 344
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=35.10 E-value=72 Score=24.79 Aligned_cols=39 Identities=21% Similarity=0.364 Sum_probs=24.0
Q ss_pred HHHHHHHHcCCEEEEEe--CCccCH------HHHhccCCCEEEECCC
Q 027062 39 NLCQYMGELGYHFEVYR--NDELTV------EELKRKNPRGVLISPG 77 (229)
Q Consensus 39 ~~~~~l~~~g~~~~v~~--~~~~~~------~~l~~~~~dgiii~GG 77 (229)
.+.+.+++.|+.+.+.. ...... +.+...++||||+.+.
T Consensus 22 gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~ 68 (288)
T 1gud_A 22 GIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPL 68 (288)
T ss_dssp HHHHHHHHHTCCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCS
T ss_pred HHHHHHHHcCCEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 35566777899988876 331111 1223347899999764
No 345
>2c4w_A 3-dehydroquinate dehydratase; 3-dehydroquinase, shikimate pathway, aromatic amino acid biosynthesis, lyase, sulphonamide; HET: GAJ; 1.55A {Helicobacter pylori} PDB: 2c57_A* 2xda_A* 1j2y_A* 2wks_A* 2xb9_A* 2c4v_A* 2xd9_A*
Probab=34.45 E-value=98 Score=23.08 Aligned_cols=41 Identities=15% Similarity=0.409 Sum_probs=24.1
Q ss_pred HHHHHHH--HcCCEEEEEeCCccC--HHHHhc--cC-CCEEEECCCCC
Q 027062 39 NLCQYMG--ELGYHFEVYRNDELT--VEELKR--KN-PRGVLISPGPG 79 (229)
Q Consensus 39 ~~~~~l~--~~g~~~~v~~~~~~~--~~~l~~--~~-~dgiii~GG~~ 79 (229)
.+.+... ++|++++.+-.+..- .+.+.+ .+ +|||||=+|..
T Consensus 42 ~l~~~a~~~~~g~~l~~~QSN~EGeLId~Ih~a~~~~~dgIIINpgAy 89 (176)
T 2c4w_A 42 IMQTFVKQGNLDVELEFFQTNFEGEIIDKIQESVGSEYEGIIINPGAF 89 (176)
T ss_dssp HHHHHHHHTTCCEEEEEEECSCHHHHHHHHHHHHSSSCCEEEEECGGG
T ss_pred HHHHHhccccCCCEEEEEeeCcHHHHHHHHHHhccCCeeEEEECcchh
Confidence 3455556 678888888765211 111221 14 89999987754
No 346
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=34.38 E-value=1.1e+02 Score=22.06 Aligned_cols=79 Identities=15% Similarity=0.041 Sum_probs=43.2
Q ss_pred CceEEEEECCCchh--HHHHHHHHHcCCEEEEEeCCccCH-HHHhccCC-CEEEECCCCCCCCCcchHHHHHHH-hCCCC
Q 027062 24 KNPIIVIDNYDSFT--YNLCQYMGELGYHFEVYRNDELTV-EELKRKNP-RGVLISPGPGAPQDSGISLQTVLE-LGPTV 98 (229)
Q Consensus 24 ~~~ilvid~~~~~~--~~~~~~l~~~g~~~~v~~~~~~~~-~~l~~~~~-dgiii~GG~~~~~~~~~~~~~i~~-~~~~~ 98 (229)
..+|.++..+.+.. ..+...|...|..+..+..+.... ..+...+. |.+|+..-.|. ....++.+.. .+++.
T Consensus 39 a~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~---t~~~~~~~~~ak~~g~ 115 (187)
T 3sho_A 39 ADHVIVVGMGFSAAVAVFLGHGLNSLGIRTTVLTEGGSTLTITLANLRPTDLMIGVSVWRY---LRDTVAALAGAAERGV 115 (187)
T ss_dssp CSEEEEECCGGGHHHHHHHHHHHHHTTCCEEEECCCTHHHHHHHHTCCTTEEEEEECCSSC---CHHHHHHHHHHHHTTC
T ss_pred CCEEEEEecCchHHHHHHHHHHHHhcCCCEEEecCCchhHHHHHhcCCCCCEEEEEeCCCC---CHHHHHHHHHHHHCCC
Confidence 35899999877753 446677788999998877321111 12222222 44444333332 2233333332 23568
Q ss_pred cEEEEeh
Q 027062 99 PLFGVCM 105 (229)
Q Consensus 99 PvlGIC~ 105 (229)
|+++|+-
T Consensus 116 ~vi~IT~ 122 (187)
T 3sho_A 116 PTMALTD 122 (187)
T ss_dssp CEEEEES
T ss_pred CEEEEeC
Confidence 9998874
No 347
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=34.10 E-value=1.7e+02 Score=22.83 Aligned_cols=54 Identities=6% Similarity=0.015 Sum_probs=31.6
Q ss_pred ceEEEEECCC--chh----HHHHHHHHHcCCEEEEEeCCccCH------HHHhccCCCEEEECCCC
Q 027062 25 NPIIVIDNYD--SFT----YNLCQYMGELGYHFEVYRNDELTV------EELKRKNPRGVLISPGP 78 (229)
Q Consensus 25 ~~ilvid~~~--~~~----~~~~~~l~~~g~~~~v~~~~~~~~------~~l~~~~~dgiii~GG~ 78 (229)
.+|.++-... .|. ..+.+.+++.|+++.+........ +.+...++||||+.+..
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~ 68 (306)
T 2vk2_A 3 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVV 68 (306)
T ss_dssp CEEEEEECCCCSHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSS
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 4677765422 233 235566778899998876532111 12233479999998643
No 348
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=33.89 E-value=86 Score=22.32 Aligned_cols=49 Identities=12% Similarity=0.160 Sum_probs=27.6
Q ss_pred ceEEEEEC-CCchhHHHHHHHHH-cCC-EEEEEeCCccCHHHHhccCCCEEEEC
Q 027062 25 NPIIVIDN-YDSFTYNLCQYMGE-LGY-HFEVYRNDELTVEELKRKNPRGVLIS 75 (229)
Q Consensus 25 ~~ilvid~-~~~~~~~~~~~l~~-~g~-~~~v~~~~~~~~~~l~~~~~dgiii~ 75 (229)
|+|+|+=. ..+.+..+++.+.+ ++. .+++++..+.+.+++. ++|.|||.
T Consensus 2 mkilIiY~S~tGnT~~vA~~ia~~l~~~~v~~~~~~~~~~~~l~--~~d~ii~g 53 (169)
T 1obo_A 2 KKIGLFYGTQTGKTESVAEIIRDEFGNDVVTLHDVSQAEVTDLN--DYQYLIIG 53 (169)
T ss_dssp CSEEEEECCSSSHHHHHHHHHHHHHCTTTEEEEETTTCCGGGGG--GCSEEEEE
T ss_pred CeEEEEEECCCchHHHHHHHHHHHhCcCCcEEEEcccCCHHHHh--hCCEEEEE
Confidence 56777742 23355666666543 222 5666665544445555 46888773
No 349
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=33.58 E-value=82 Score=25.84 Aligned_cols=80 Identities=11% Similarity=0.180 Sum_probs=46.1
Q ss_pred ccCCCceEEEEECCCchh-HHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCC-------cchHHHHH
Q 027062 20 SKNNKNPIIVIDNYDSFT-YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQD-------SGISLQTV 91 (229)
Q Consensus 20 ~~~~~~~ilvid~~~~~~-~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~-------~~~~~~~i 91 (229)
.++++-+|.+.+....+. ..++..|.+.|+++.++... ....+-. ++|.+|+ |- ..+.. .+-+.-.+
T Consensus 143 ~~gk~~~V~v~EsrP~~qG~~la~~L~~~gI~vtli~Ds--a~~~~m~-~vd~Viv-GA-d~i~~nG~v~nkiGT~~iAl 217 (315)
T 3ecs_A 143 AAKKRFSVYVTESQPDLSGKKMAKALCHLNVPVTVVLDA--AVGYIME-KADLVIV-GA-EGVVENGGIINKIGTNQMAV 217 (315)
T ss_dssp TTTCCEEEEEECCTTTTHHHHHHHHHHTTTCCEEEECGG--GHHHHGG-GCSEEEE-EC-SEECTTSCEEEETTHHHHHH
T ss_pred HcCCeEEEEEecCCCcchHHHHHHHHHHcCCCEEEEehh--HHHHHHH-hCCEEEE-Cc-eEEecCCCeeehhhhHHHHH
Confidence 345566777777665554 34677888999999888632 2222222 5687766 32 22222 22333333
Q ss_pred HHhCCCCcEEEEe
Q 027062 92 LELGPTVPLFGVC 104 (229)
Q Consensus 92 ~~~~~~~PvlGIC 104 (229)
.+...++|++-.|
T Consensus 218 ~Ak~~~vP~~V~a 230 (315)
T 3ecs_A 218 CAKAQNKPFYVVA 230 (315)
T ss_dssp HHHHTTCCEEEEC
T ss_pred HHHHhCCCEEEEe
Confidence 4444579999666
No 350
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=33.51 E-value=98 Score=22.88 Aligned_cols=33 Identities=18% Similarity=0.140 Sum_probs=20.3
Q ss_pred ceEEEEECC---CchhHHHHHHHHH---cCCEEEEEeCC
Q 027062 25 NPIIVIDNY---DSFTYNLCQYMGE---LGYHFEVYRND 57 (229)
Q Consensus 25 ~~ilvid~~---~~~~~~~~~~l~~---~g~~~~v~~~~ 57 (229)
++|++|..- .+++..+++++.+ .|.+++++...
T Consensus 3 ~kilii~gS~r~~s~t~~la~~~~~~~~~~~~v~~~dl~ 41 (192)
T 3fvw_A 3 KRILFIVGSFSEGSFNRQLAKKAETIIGDRAQVSYLSYD 41 (192)
T ss_dssp CEEEEEESCCSTTCHHHHHHHHHHHHHTTSSEEEECCCS
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHhcCCCCEEEEEeCc
Confidence 579999753 3455555555432 47888877653
No 351
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=33.50 E-value=77 Score=24.48 Aligned_cols=75 Identities=13% Similarity=0.052 Sum_probs=38.7
Q ss_pred CCceEEEEEC---CCchhH----HHHHHHHHcCCEEEEEeCC--ccC----HHHHhccCCCEEEECCCCCCCCCcchHHH
Q 027062 23 NKNPIIVIDN---YDSFTY----NLCQYMGELGYHFEVYRND--ELT----VEELKRKNPRGVLISPGPGAPQDSGISLQ 89 (229)
Q Consensus 23 ~~~~ilvid~---~~~~~~----~~~~~l~~~g~~~~v~~~~--~~~----~~~l~~~~~dgiii~GG~~~~~~~~~~~~ 89 (229)
++.+|.||-. .+.|.. .+.+.+++.|+.+.+...+ ... .+.+...++||||+.+... .. ..
T Consensus 10 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-----~~-~~ 83 (289)
T 3g85_A 10 SKPTIALYWSSDISVNIISRFLRGLQSKLAKQNYNYNVVICPYKTDCLHLEKGISKENSFDAAIIANISN-----YD-LE 83 (289)
T ss_dssp -CCEEEEEEETTSCGGGHHHHHHHHHHHHHHTTTCSEEEEEEECTTCGGGCGGGSTTTCCSEEEESSCCH-----HH-HH
T ss_pred CCceEEEEeccccchHHHHHHHHHHHHHHHHcCCeEEEEecCCCchhHHHHHHHHhccCCCEEEEecCCc-----cc-HH
Confidence 4456766632 233433 3556677789988766422 111 1223334799999986421 11 12
Q ss_pred HHHHhCCCCcEEEE
Q 027062 90 TVLELGPTVPLFGV 103 (229)
Q Consensus 90 ~i~~~~~~~PvlGI 103 (229)
.......++|+.-+
T Consensus 84 ~~~~~~~~iPvV~~ 97 (289)
T 3g85_A 84 YLNKASLTLPIILF 97 (289)
T ss_dssp HHHHCCCSSCEEEE
T ss_pred HHHhccCCCCEEEE
Confidence 22233456777655
No 352
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=33.34 E-value=59 Score=26.01 Aligned_cols=34 Identities=15% Similarity=0.045 Sum_probs=24.8
Q ss_pred CCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeC
Q 027062 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN 56 (229)
Q Consensus 22 ~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~ 56 (229)
.+.|+|+|++. +.....+.+.|.+.|+++.+...
T Consensus 5 ~~~mki~v~~~-~~~~~~~~~~L~~~g~~v~~~~~ 38 (300)
T 2rir_A 5 LTGLKIAVIGG-DARQLEIIRKLTEQQADIYLVGF 38 (300)
T ss_dssp CCSCEEEEESB-CHHHHHHHHHHHHTTCEEEEESC
T ss_pred ccCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEec
Confidence 45678999974 34555667888889999987653
No 353
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=33.34 E-value=55 Score=24.48 Aligned_cols=35 Identities=9% Similarity=0.079 Sum_probs=21.4
Q ss_pred CCCceEEEEECC---CchhHHHHHHHHH---cCCEEE-EEeC
Q 027062 22 NNKNPIIVIDNY---DSFTYNLCQYMGE---LGYHFE-VYRN 56 (229)
Q Consensus 22 ~~~~~ilvid~~---~~~~~~~~~~l~~---~g~~~~-v~~~ 56 (229)
..+|||++|..- +++...+.+++.+ .|++++ ++..
T Consensus 2 ~~~mkil~I~GS~r~~s~t~~l~~~~~~~~~~g~~v~~~idL 43 (193)
T 3svl_A 2 AEKLQVVTLLGSLRKGSFNGMVARTLPKIAPASMEVNALPSI 43 (193)
T ss_dssp --CEEEEEEECCCSTTCHHHHHHHHGGGTSCTTEEEEECCCS
T ss_pred CCCCEEEEEEccCCCCCHHHHHHHHHHHHccCCCEEEEEEeH
Confidence 346789998642 3466667777654 377777 5543
No 354
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=33.13 E-value=1.4e+02 Score=21.55 Aligned_cols=49 Identities=16% Similarity=0.093 Sum_probs=26.9
Q ss_pred ceEEEEEC-CCchhHHHHHHHHH-cCC-EEEEEeCCccCHHHHhccCCCEEEEC
Q 027062 25 NPIIVIDN-YDSFTYNLCQYMGE-LGY-HFEVYRNDELTVEELKRKNPRGVLIS 75 (229)
Q Consensus 25 ~~ilvid~-~~~~~~~~~~~l~~-~g~-~~~v~~~~~~~~~~l~~~~~dgiii~ 75 (229)
|+|+|+=. ..+.+..+++.+.+ ++. .+.+.+..+....++. ++|.|||.
T Consensus 1 Mki~IvY~S~tGnT~~iA~~Ia~~l~~~~v~i~~~~~~~~~~l~--~~d~ii~g 52 (175)
T 1ag9_A 1 AITGIFFGSDTGNTENIAKMIQKQLGKDVADVHDIAKSSKEDLE--AYDILLLG 52 (175)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHCTTTEEEEEGGGCCHHHHH--TCSEEEEE
T ss_pred CEEEEEEECCCchHHHHHHHHHHHhccCceEEEEcccCChhHhh--hCCEEEEE
Confidence 46777732 23355666666543 232 4556654434455665 56888774
No 355
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=33.09 E-value=1.1e+02 Score=21.67 Aligned_cols=49 Identities=10% Similarity=0.114 Sum_probs=26.6
Q ss_pred ceEEEEEC-CCchhHHHHHHHHH-cCC--EEEEEeCCccCHHHHhccCCCEEEEC
Q 027062 25 NPIIVIDN-YDSFTYNLCQYMGE-LGY--HFEVYRNDELTVEELKRKNPRGVLIS 75 (229)
Q Consensus 25 ~~ilvid~-~~~~~~~~~~~l~~-~g~--~~~v~~~~~~~~~~l~~~~~dgiii~ 75 (229)
|+|+|+=. ..+.+..+++.+.+ ++. .+++++..+.+.+++. ++|.|||.
T Consensus 1 ~kilIvY~S~tGnT~~vA~~ia~~l~~~~~v~~~~~~~~~~~~l~--~~d~ii~g 53 (169)
T 1czn_A 1 AKIGLFYGTQTGVTQTIAESIQQEFGGESIVDLNDIANADASDLN--AYDYLIIG 53 (169)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHTSTTTEEEEEGGGCCGGGGG--GCSEEEEE
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHhCcccceEEEEhhhCCHhHHh--hCCEEEEE
Confidence 35666632 23355666666543 333 4666665434444555 46888773
No 356
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 1.60A {Bifidobacterium longum} SCOP: c.23.13.0
Probab=33.08 E-value=78 Score=23.02 Aligned_cols=41 Identities=20% Similarity=0.344 Sum_probs=24.3
Q ss_pred HHHHHHHcCCEEEEEeCCccC--HHHHhc--cCCCEEEECCCCCC
Q 027062 40 LCQYMGELGYHFEVYRNDELT--VEELKR--KNPRGVLISPGPGA 80 (229)
Q Consensus 40 ~~~~l~~~g~~~~v~~~~~~~--~~~l~~--~~~dgiii~GG~~~ 80 (229)
+.+...+.|++++.+-.+..- .+.+.+ .++|||||=+|..+
T Consensus 38 l~~~a~~~g~~v~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~T 82 (151)
T 3u80_A 38 CAEWGKDLGLEVEVRQTDDEAEMVRWMHQAADEKTPVVMNPAAFT 82 (151)
T ss_dssp HHHHHHHTTEEEEEEECSCHHHHHHHHHHHHHHTCCEEEECTTCC
T ss_pred HHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCcEEEECcchhh
Confidence 444455679999888765211 111111 15799999887654
No 357
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=32.32 E-value=48 Score=25.19 Aligned_cols=39 Identities=23% Similarity=0.212 Sum_probs=25.1
Q ss_pred HHHHHHHHcCCEEEEEeCCccC------HHHHhccCCCEEEECCC
Q 027062 39 NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPG 77 (229)
Q Consensus 39 ~~~~~l~~~g~~~~v~~~~~~~------~~~l~~~~~dgiii~GG 77 (229)
.+.+.+++.|+.+.+....... .+.+...++||||+.+.
T Consensus 23 gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 67 (255)
T 1byk_A 23 TMLPAFYEQGYDPIMMESQFSPQLVAEHLGVLKRRNIDGVVLFGF 67 (255)
T ss_dssp HHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred HHHHHHHHcCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecC
Confidence 3566677889999887653211 12233347999999875
No 358
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=32.21 E-value=20 Score=29.36 Aligned_cols=80 Identities=9% Similarity=0.049 Sum_probs=43.4
Q ss_pred CCceEEEEECCCchhHH----HHHHHHHcCCEEEEEe-CCc-cCH-HHHhc--cCCCEEEECCCCCCCCCcchHHHHHHH
Q 027062 23 NKNPIIVIDNYDSFTYN----LCQYMGELGYHFEVYR-NDE-LTV-EELKR--KNPRGVLISPGPGAPQDSGISLQTVLE 93 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~----~~~~l~~~g~~~~v~~-~~~-~~~-~~l~~--~~~dgiii~GG~~~~~~~~~~~~~i~~ 93 (229)
..++++||...+.|-.. +.+.+++.|.++.-.. +.. .+. ..+.. .++|+|+++|... +...+.+.++.
T Consensus 121 g~k~vail~~~~~yG~~~~~~F~~~~~~~Gg~vv~~~~y~~~~d~~~~l~~i~~~pDaV~~~~~~~---~~~~i~~~~~~ 197 (325)
T 2h4a_A 121 GVRNPLVAMPQNDLGQRVGNAFNVRWQQLAGTDANIRYYNLPADVTYFVQENNSNTTALYAVASPT---ELAEXKGYLTN 197 (325)
T ss_dssp TCCSCEEEEESSHHHHHHHHHHHHHHHHHHSSCCEEEEESSTTHHHHHHHHSTTCCCEEEECCCHH---HHHHHHHHHTT
T ss_pred CCCeEEEEEcCCcHHHHHHHHHHHHHHHcCCCcceeEecCCHHHHHHHHHhcCCCCCEEEEeCCHH---HHhhhhhhHhh
Confidence 45667777554556544 5555666676654222 211 111 12332 4799999986431 12223344444
Q ss_pred hCCCCcEEEEeh
Q 027062 94 LGPTVPLFGVCM 105 (229)
Q Consensus 94 ~~~~~PvlGIC~ 105 (229)
.+.+.|++|.-.
T Consensus 198 ~g~~~pl~~~~~ 209 (325)
T 2h4a_A 198 IVPNLAIYASSR 209 (325)
T ss_dssp TCTTCEEEECGG
T ss_pred cCCCCCEEEecc
Confidence 567899999854
No 359
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=32.15 E-value=1e+02 Score=20.62 Aligned_cols=49 Identities=12% Similarity=0.047 Sum_probs=28.1
Q ss_pred ceEEEEECC---Cc-hhHHHHHHHHHcCCEEEEEeCCccCHH-HHhccCCCEEEEC
Q 027062 25 NPIIVIDNY---DS-FTYNLCQYMGELGYHFEVYRNDELTVE-ELKRKNPRGVLIS 75 (229)
Q Consensus 25 ~~ilvid~~---~~-~~~~~~~~l~~~g~~~~v~~~~~~~~~-~l~~~~~dgiii~ 75 (229)
++|+++=.. +| ....+.+++++.|+++++......... .++ ++|.++++
T Consensus 4 kkIll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i~a~~~~~~~~~~~--~~Dvil~~ 57 (106)
T 1e2b_A 4 KHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAGEKGQ--NADVVLLG 57 (106)
T ss_dssp EEEEEECSSSTTTHHHHHHHHHHHHHSCCSEEEEEECSSSTTHHHH--HCSEEEEC
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHCCCCeEEEEecHHHHHhhcc--CCCEEEEc
Confidence 467776322 12 224577888889998887764422222 233 46866654
No 360
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=32.14 E-value=2.2e+02 Score=23.71 Aligned_cols=98 Identities=11% Similarity=0.065 Sum_probs=52.8
Q ss_pred CceEEEEECCCchh---HHHHHHHHHc--CCEEEEE-eCCccCHHHHhccCCCEEEECCCCCCCCCc-------chHHHH
Q 027062 24 KNPIIVIDNYDSFT---YNLCQYMGEL--GYHFEVY-RNDELTVEELKRKNPRGVLISPGPGAPQDS-------GISLQT 90 (229)
Q Consensus 24 ~~~ilvid~~~~~~---~~~~~~l~~~--g~~~~v~-~~~~~~~~~l~~~~~dgiii~GG~~~~~~~-------~~~~~~ 90 (229)
.-.+++||....+. ...++++++. +..+..- -........+.+...|+|+++.|++...+. ...+..
T Consensus 112 GvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~aGaD~I~Vg~g~G~~~~tr~~~g~g~p~l~a 191 (361)
T 3r2g_A 112 GADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASCGADIIKAGIGGGSVCSTRIKTGFGVPMLTC 191 (361)
T ss_dssp TCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHTTCSEEEECCSSSSCHHHHHHHCCCCCHHHH
T ss_pred CCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHcCCCEEEEcCCCCcCccccccCCccHHHHHH
Confidence 34588888533332 3456677765 6666542 112111233444578999997666643210 113444
Q ss_pred HHHhC-CCCcEE---EEehhHHHH-HHHhCCeeeec
Q 027062 91 VLELG-PTVPLF---GVCMGLQCI-GEAFGGKIVRS 121 (229)
Q Consensus 91 i~~~~-~~~Pvl---GIC~G~Qll-a~alGg~v~~~ 121 (229)
+.+.. ...||+ ||..|-.+. +.++|+.....
T Consensus 192 I~~~~~~~~PVIAdGGI~~~~di~kALa~GAd~V~i 227 (361)
T 3r2g_A 192 IQDCSRADRSIVADGGIKTSGDIVKALAFGADFVMI 227 (361)
T ss_dssp HHHHTTSSSEEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHhCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 54432 112999 787666665 56778765443
No 361
>2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural genomics, JOI for structural genomics, JCSG; 2.50A {Thermotoga maritima} SCOP: c.55.1.9 c.55.1.9
Probab=32.03 E-value=19 Score=27.91 Aligned_cols=44 Identities=18% Similarity=0.193 Sum_probs=27.8
Q ss_pred CCCEEEECCCCCCCCCc--chHHHHHHHhCCCCcEEEEehhHHHHHH
Q 027062 68 NPRGVLISPGPGAPQDS--GISLQTVLELGPTVPLFGVCMGLQCIGE 112 (229)
Q Consensus 68 ~~dgiii~GG~~~~~~~--~~~~~~i~~~~~~~PvlGIC~G~Qlla~ 112 (229)
+.|+|.++-|||+..-- +.....-..+..++|++||+- ++.++.
T Consensus 66 dld~Iav~~GPGsfTGlRiG~~~Ak~La~~~~iPl~gVs~-l~a~a~ 111 (218)
T 2a6a_A 66 DLDVVGVGIGPGGLTGLRVGIATVVGLVSPYDIPVAPLNS-FEMTAK 111 (218)
T ss_dssp GCSEEEEECCSSCHHHHHHHHHHHHHHHGGGTCCEEEECH-HHHHHH
T ss_pred HCCEEEEEcCCCchHhHHHHHHHHHHHHHHcCCCEEEeCc-HHHHHh
Confidence 46999999999975421 111122223455799999995 555554
No 362
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=31.80 E-value=1.6e+02 Score=23.61 Aligned_cols=79 Identities=8% Similarity=-0.024 Sum_probs=46.5
Q ss_pred CCceEEEEECCCchh----HHHHHHHHHcCCEEEE---EeCCccC----HHHHhccCCCEEEECCCCCCCCCcchHHHHH
Q 027062 23 NKNPIIVIDNYDSFT----YNLCQYMGELGYHFEV---YRNDELT----VEELKRKNPRGVLISPGPGAPQDSGISLQTV 91 (229)
Q Consensus 23 ~~~~ilvid~~~~~~----~~~~~~l~~~g~~~~v---~~~~~~~----~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i 91 (229)
...+|++|...+.+. ..+.+.+++.|.++.. +.....+ ...+...++|+|++.+.. .....+++.+
T Consensus 150 g~~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~~dai~~~~~~---~~a~~~~~~~ 226 (375)
T 4evq_A 150 GLKKAVTVTWKYAAGEEMVSGFKKSFTAGKGEVVKDITIAFPDVEFQSALAEIASLKPDCVYAFFSG---GGALKFIKDY 226 (375)
T ss_dssp TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHHHCCSEEEEECCT---HHHHHHHHHH
T ss_pred CCcEEEEEecCchHHHHHHHHHHHHHHHcCCeEEEEEecCCCCccHHHHHHHHHhcCCCEEEEecCc---chHHHHHHHH
Confidence 556888885433332 3467788889998742 2222111 223444478999985432 1122345666
Q ss_pred HHhCCCCcEEEEe
Q 027062 92 LELGPTVPLFGVC 104 (229)
Q Consensus 92 ~~~~~~~PvlGIC 104 (229)
++.+-.+|++|.-
T Consensus 227 ~~~g~~vp~~~~~ 239 (375)
T 4evq_A 227 AAANLGIPLWGPG 239 (375)
T ss_dssp HHTTCCCCEEEEG
T ss_pred HHcCCCceEEecC
Confidence 6777679999984
No 363
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=31.34 E-value=85 Score=25.97 Aligned_cols=80 Identities=10% Similarity=0.086 Sum_probs=48.9
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEE-EeC-----CccCHHHHhcc-----CCCEEEEC---CCCCCCCCcchHHH
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEV-YRN-----DELTVEELKRK-----NPRGVLIS---PGPGAPQDSGISLQ 89 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v-~~~-----~~~~~~~l~~~-----~~dgiii~---GG~~~~~~~~~~~~ 89 (229)
+-+|.+|-.-+.....+..++...|+-+.. +.. .+.+..|+.++ +-+.|++- ||. .+ ..+++
T Consensus 168 ~G~vgivSqSG~l~~~i~~~~~~~g~G~S~~VsiGn~~~~d~~~~D~l~~~~~Dp~T~~I~l~gEi~g~---~e-~~~~~ 243 (334)
T 3mwd_B 168 PGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGT---EE-YKICR 243 (334)
T ss_dssp CCSEEEEESCHHHHHHHHHHHHHHSSCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEESSSS---HH-HHHHH
T ss_pred CCCEEEEeCchHHHHHHHHHHHhcCCCeEEEEECCCCccCCCCHHHHHHHHhcCCCCCEEEEEEecCCh---HH-HHHHH
Confidence 346888876455777788888777664432 221 12344443321 45677774 443 22 45667
Q ss_pred HHHHhCCCCcEEEEehhH
Q 027062 90 TVLELGPTVPLFGVCMGL 107 (229)
Q Consensus 90 ~i~~~~~~~PvlGIC~G~ 107 (229)
.+++...+|||+.++-|-
T Consensus 244 ~~r~~~~~KPVV~~kaGr 261 (334)
T 3mwd_B 244 GIKEGRLTKPIVCWCIGT 261 (334)
T ss_dssp HHHTTSCCSCEEEEEECT
T ss_pred HHHhhcCCCCEEEEEcCC
Confidence 777656789999999773
No 364
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=31.24 E-value=27 Score=29.30 Aligned_cols=77 Identities=8% Similarity=-0.035 Sum_probs=41.0
Q ss_pred CceEEEEECCCchhHHHHHHHHH-cCCEEEEEeCCccCHHHHhc-cCCCEEEECCCCCCCCCcc-hHHHHHHHhCCCCcE
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGE-LGYHFEVYRNDELTVEELKR-KNPRGVLISPGPGAPQDSG-ISLQTVLELGPTVPL 100 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~-~g~~~~v~~~~~~~~~~l~~-~~~dgiii~GG~~~~~~~~-~~~~~i~~~~~~~Pv 100 (229)
+++|+|||........+.+.|+. .|..+..........+.+.. ..+|.|++== ..|...+ .+++.+++.....||
T Consensus 3 ~~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~~~~~~DlvllDi--~mP~~dG~ell~~l~~~~~~~~i 80 (400)
T 3sy8_A 3 DLNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESCGHVDIAICDL--QMSGMDGLAFLRHASLSGKVHSV 80 (400)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHHSCEEEEEECS--SCSSSCHHHHHHHHHHHTCEEEE
T ss_pred CceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHhhCCCCCEEEEeC--CCCCCCHHHHHHHHHhcCCCceE
Confidence 46899999644455667788887 46665544322111223333 2577776621 1222233 345666665544455
Q ss_pred EE
Q 027062 101 FG 102 (229)
Q Consensus 101 lG 102 (229)
+-
T Consensus 81 i~ 82 (400)
T 3sy8_A 81 IL 82 (400)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 365
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=31.13 E-value=95 Score=21.75 Aligned_cols=34 Identities=9% Similarity=0.131 Sum_probs=26.8
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCC
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND 57 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~ 57 (229)
..++|+|+.. +..-..+++.|...|.++.++..+
T Consensus 18 ~~~~v~IiG~-G~iG~~la~~L~~~g~~V~vid~~ 51 (155)
T 2g1u_A 18 KSKYIVIFGC-GRLGSLIANLASSSGHSVVVVDKN 51 (155)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCCcEEEECC-CHHHHHHHHHHHhCCCeEEEEECC
Confidence 3578999985 556677889999999999888654
No 366
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=31.09 E-value=37 Score=25.63 Aligned_cols=32 Identities=22% Similarity=0.362 Sum_probs=23.1
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCC
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND 57 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~ 57 (229)
|+|+|+.. +.+-..+++.|.+.|.++.++..+
T Consensus 1 M~iiIiG~-G~~G~~la~~L~~~g~~v~vid~~ 32 (218)
T 3l4b_C 1 MKVIIIGG-ETTAYYLARSMLSRKYGVVIINKD 32 (218)
T ss_dssp CCEEEECC-HHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEEEEECC
Confidence 56788874 455667778888888888877654
No 367
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=30.59 E-value=1e+02 Score=24.57 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=20.4
Q ss_pred ccCCCceEEEEECCCchh-HHHHHHHHHcC--CEEEEE
Q 027062 20 SKNNKNPIIVIDNYDSFT-YNLCQYMGELG--YHFEVY 54 (229)
Q Consensus 20 ~~~~~~~ilvid~~~~~~-~~~~~~l~~~g--~~~~v~ 54 (229)
++...|+|+|... .++. ..+++.|.+.| +++..+
T Consensus 20 ~~~~~~~vlVtGa-tG~iG~~l~~~L~~~g~~~~v~~~ 56 (346)
T 4egb_A 20 FQSNAMNILVTGG-AGFIGSNFVHYMLQSYETYKIINF 56 (346)
T ss_dssp ----CEEEEEETT-TSHHHHHHHHHHHHHCTTEEEEEE
T ss_pred cccCCCeEEEECC-ccHHHHHHHHHHHhhCCCcEEEEE
Confidence 3345678888886 4554 56888888888 454433
No 368
>3lzd_A DPH2; diphthamide biosynthesis, radical SAM enzyme, gene triplicat iron-sulfur cluster, biosynthetic protein; 2.10A {Pyrococcus horikoshii} PDB: 3lzc_A
Probab=30.53 E-value=1.3e+02 Score=25.34 Aligned_cols=43 Identities=7% Similarity=0.132 Sum_probs=36.1
Q ss_pred hHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCC
Q 027062 37 TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPG 79 (229)
Q Consensus 37 ~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~ 79 (229)
...+.+.++++|.+..++-..+.+.+.|..+++|+.|+.+-|.
T Consensus 283 ~~~L~~ll~~~Gkk~y~i~vg~inp~KLanF~iD~fV~vaCPr 325 (378)
T 3lzd_A 283 AKRIVKLLKKHGREARLIVMNDVNYHKLEGFPFEAYVVVACPR 325 (378)
T ss_dssp HHHHHHHHHHTTCEEEEEEESSCCHHHHTTSCCSEEEECSCTH
T ss_pred HHHHHHHHHHcCCcEEEEEeCCCCHHHHhCCCCCEEEEecCCC
Confidence 3567788889999998888777888999877899999999874
No 369
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=30.47 E-value=58 Score=25.64 Aligned_cols=97 Identities=13% Similarity=0.115 Sum_probs=54.8
Q ss_pred ccCCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCcc----CHHHH----hc-cCCCEEEECCCCCCCCCcchHHHH
Q 027062 20 SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL----TVEEL----KR-KNPRGVLISPGPGAPQDSGISLQT 90 (229)
Q Consensus 20 ~~~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~----~~~~l----~~-~~~dgiii~GG~~~~~~~~~~~~~ 90 (229)
|.+..++|+|-.. ......+.+.|++.|+++..++.-.. ..+.+ .. .+||.||++...+ ...+.+.
T Consensus 10 ~~~~g~~IlvTRp-~~~a~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~na----V~~~~~~ 84 (269)
T 3re1_A 10 MDMSAWRLLLTRP-AEESAALARVLADAGIFSSSLPLLETEPLPLTPAQRSIIFELLNYSAVIVVSKPA----ARLAIEL 84 (269)
T ss_dssp ---CCCEEEECSC-HHHHHHHHHHHHTTTCEEEECCCCEEEECCCHHHHHHHHHTGGGSSEEEECSHHH----HHHHHHH
T ss_pred cccCCCEEEEeCC-hHHHHHHHHHHHHCCCCEEEcCCEEEecCCCcHHHHHHHHhccCCCEEEEECHHH----HHHHHHH
Confidence 4455678888764 23456788999999999987664221 11122 12 2689999985432 2223333
Q ss_pred HHHhC---CCCcEEEEehhHHHHHHHhCCeeeec
Q 027062 91 VLELG---PTVPLFGVCMGLQCIGEAFGGKIVRS 121 (229)
Q Consensus 91 i~~~~---~~~PvlGIC~G~Qlla~alGg~v~~~ 121 (229)
+.+.. ++++++.|.-+---..+.+|-++...
T Consensus 85 l~~~~~~~~~~~i~aVG~~Ta~aL~~~G~~~~~~ 118 (269)
T 3re1_A 85 IDEVWPQPPMQPWFSVGSATGQILLDYGLDASWP 118 (269)
T ss_dssp HHHHCSSCCCSCEEESSHHHHHHHHHTTCCEECC
T ss_pred HHHhCCCcccCEEEEECHHHHHHHHHcCCCcccC
Confidence 33321 23678777766555555567665433
No 370
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=30.44 E-value=40 Score=27.16 Aligned_cols=54 Identities=17% Similarity=0.203 Sum_probs=33.2
Q ss_pred CCceEEEEECC--CchhH----HHHHHHHHcCCEEEEEeCCccCHH------HHhccCCCEEEECCC
Q 027062 23 NKNPIIVIDNY--DSFTY----NLCQYMGELGYHFEVYRNDELTVE------ELKRKNPRGVLISPG 77 (229)
Q Consensus 23 ~~~~ilvid~~--~~~~~----~~~~~l~~~g~~~~v~~~~~~~~~------~l~~~~~dgiii~GG 77 (229)
.+..|.+|-.. +.|.. .+.+.+++.|+.+.+...+. ... .+...++||||+.+.
T Consensus 63 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~vdGiIi~~~ 128 (333)
T 3jvd_A 63 RSALVGVIVPDLSNEYYSESLQTIQQDLKAAGYQMLVAEANS-VQAQDVVMESLISIQAAGIIHVPV 128 (333)
T ss_dssp -CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEECCS-HHHHHHHHHHHHHHTCSEEEECCC
T ss_pred CCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEECCCC-hHHHHHHHHHHHhCCCCEEEEcch
Confidence 34567776432 22333 35666777899999887654 221 122347999999886
No 371
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=30.39 E-value=1.5e+02 Score=24.37 Aligned_cols=34 Identities=15% Similarity=0.131 Sum_probs=26.2
Q ss_pred CCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeC
Q 027062 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN 56 (229)
Q Consensus 22 ~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~ 56 (229)
+..++|+|+..+ .....+.+.++++|+++..+..
T Consensus 5 ~~~~~ilI~g~g-~~~~~~~~a~~~~G~~~v~v~~ 38 (403)
T 4dim_A 5 YDNKRLLILGAG-RGQLGLYKAAKELGIHTIAGTM 38 (403)
T ss_dssp -CCCEEEEECCC-GGGHHHHHHHHHHTCEEEEEEC
T ss_pred cCCCEEEEECCc-HhHHHHHHHHHHCCCEEEEEcC
Confidence 456789999864 4566788999999999988753
No 372
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Probab=30.39 E-value=94 Score=25.27 Aligned_cols=56 Identities=16% Similarity=0.100 Sum_probs=36.6
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCC-EEEEEeCCccCHHHHhcc--CCCEEEECCCCCCC
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGY-HFEVYRNDELTVEELKRK--NPRGVLISPGPGAP 81 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~-~~~v~~~~~~~~~~l~~~--~~dgiii~GG~~~~ 81 (229)
|+|+|....+..-..+++.|.+.|. ++...... .+.+.+... ++|.||-..|...+
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~-~d~~~l~~~~~~~d~Vih~a~~~~~ 59 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQ-TKEEELESALLKADFIVHLAGVNRP 59 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTT-CCHHHHHHHHHHCSEEEECCCSBCT
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCC-CCHHHHHHHhccCCEEEECCcCCCC
Confidence 5788888643344568888888888 77665431 334444332 68999988876544
No 373
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=30.34 E-value=20 Score=25.22 Aligned_cols=26 Identities=27% Similarity=0.600 Sum_probs=21.1
Q ss_pred eccCCCCCCCchHHHHHHHHHHHHHH
Q 027062 197 QFHPESIITTEGKTIVRNFIKMIVRK 222 (229)
Q Consensus 197 QfHPE~~~~~~~~~i~~~f~~~~~~~ 222 (229)
|-||+...+.....+++.|++++-++
T Consensus 45 QVhpd~gISskAm~ImnSfvnDifer 70 (123)
T 2nqb_D 45 QVHPDTGISSKAMSIMNSFVNDIFER 70 (123)
T ss_dssp HHCTTCEECHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 88999766778889999999887543
No 374
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=30.29 E-value=20 Score=25.33 Aligned_cols=26 Identities=27% Similarity=0.567 Sum_probs=21.3
Q ss_pred eccCCCCCCCchHHHHHHHHHHHHHH
Q 027062 197 QFHPESIITTEGKTIVRNFIKMIVRK 222 (229)
Q Consensus 197 QfHPE~~~~~~~~~i~~~f~~~~~~~ 222 (229)
|-||+...+.....|++.|++++-++
T Consensus 48 QVhpd~gISskAm~ImnSfvnDifer 73 (126)
T 1tzy_B 48 QVHPDTGISSKAMGIMNSFVNDIFER 73 (126)
T ss_dssp HHCTTCEECHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 88999766778889999999887543
No 375
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=30.01 E-value=2e+02 Score=22.82 Aligned_cols=85 Identities=11% Similarity=0.092 Sum_probs=48.3
Q ss_pred CCceEEEEECCCchh----HHHHHHHHHcCCEEEEE---eCCccC----HHHHhccCCCEEEECCCCCCCCCcchHHHHH
Q 027062 23 NKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVY---RNDELT----VEELKRKNPRGVLISPGPGAPQDSGISLQTV 91 (229)
Q Consensus 23 ~~~~ilvid~~~~~~----~~~~~~l~~~g~~~~v~---~~~~~~----~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i 91 (229)
...+|++|...+.+. ..+.+.+++.|.++... .....+ ...+...++|+|++.+... +...+++.+
T Consensus 138 g~~~ia~i~~~~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~---~a~~~~~~~ 214 (368)
T 4eyg_A 138 GIKKVATLTSDYAPGNDALAFFKERFTAGGGEIVEEIKVPLANPDFAPFLQRMKDAKPDAMFVFVPAG---QGGNFMKQF 214 (368)
T ss_dssp TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSSCCCHHHHHHHHHHCCSEEEEECCTT---CHHHHHHHH
T ss_pred CCCEEEEEecCchHhHHHHHHHHHHHHHcCCEEEEEEeCCCCCCcHHHHHHHHHhcCCCEEEEeccch---HHHHHHHHH
Confidence 456788885433332 34677788889887532 222111 2334445789999854322 334456666
Q ss_pred HHhCC---CCcEEEEe--hhHHHH
Q 027062 92 LELGP---TVPLFGVC--MGLQCI 110 (229)
Q Consensus 92 ~~~~~---~~PvlGIC--~G~Qll 110 (229)
++.+- ++|++|.. ..-+++
T Consensus 215 ~~~g~~~~~v~~~~~~~~~~~~~~ 238 (368)
T 4eyg_A 215 AERGLDKSGIKVIGPGDVMDDDLL 238 (368)
T ss_dssp HHTTGGGTTCEEEEETTTTCHHHH
T ss_pred HHcCCCcCCceEEecCcccCHHHH
Confidence 66542 28899985 444444
No 376
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=29.97 E-value=1.4e+02 Score=23.85 Aligned_cols=61 Identities=10% Similarity=-0.037 Sum_probs=36.9
Q ss_pred cCCCceEEEEECCCchh-HHHHHHHHHcCCEEEEEeCC------------ccCHHHHhcc--CCCEEEECCCCCCCC
Q 027062 21 KNNKNPIIVIDNYDSFT-YNLCQYMGELGYHFEVYRND------------ELTVEELKRK--NPRGVLISPGPGAPQ 82 (229)
Q Consensus 21 ~~~~~~ilvid~~~~~~-~~~~~~l~~~g~~~~v~~~~------------~~~~~~l~~~--~~dgiii~GG~~~~~ 82 (229)
...+++|+|... .++. ..+++.|.+.|.+|..+... -.+.+.+... ++|.||-..|.....
T Consensus 16 ~~~~~~vlVtGa-tG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~~~~~ 91 (347)
T 4id9_A 16 PRGSHMILVTGS-AGRVGRAVVAALRTQGRTVRGFDLRPSGTGGEEVVGSLEDGQALSDAIMGVSAVLHLGAFMSWA 91 (347)
T ss_dssp -----CEEEETT-TSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSEEESCTTCHHHHHHHHTTCSEEEECCCCCCSS
T ss_pred ccCCCEEEEECC-CChHHHHHHHHHHhCCCEEEEEeCCCCCCCccEEecCcCCHHHHHHHHhCCCEEEECCcccCcc
Confidence 445677888886 4554 56888898899988766421 1222333322 789999988866543
No 377
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=29.93 E-value=1.1e+02 Score=27.47 Aligned_cols=77 Identities=12% Similarity=0.042 Sum_probs=45.8
Q ss_pred CceEEEEECCCc---hh-HHHHHHHHHcCCEEEEEeCCccCHHHHhc----cCCCEEEECCCCCCCC-CcchHHHHHHHh
Q 027062 24 KNPIIVIDNYDS---FT-YNLCQYMGELGYHFEVYRNDELTVEELKR----KNPRGVLISPGPGAPQ-DSGISLQTVLEL 94 (229)
Q Consensus 24 ~~~ilvid~~~~---~~-~~~~~~l~~~g~~~~v~~~~~~~~~~l~~----~~~dgiii~GG~~~~~-~~~~~~~~i~~~ 94 (229)
+.+|++.--.+. .- ..+...|+..|+++..+..+ .+.+++.. .++|.|.+++...... ....+++.+++.
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~-vP~e~iv~aa~~~~~diVgLS~l~t~~~~~m~~~i~~Lr~~ 176 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVM-VPAEKILRTAKEVNADLIGLSGLITPSLDEMVNVAKEMERQ 176 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSS-BCHHHHHHHHHHHTCSEEEEECCSTHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEEEecCCCCHHHHHHHHHHHHHc
Confidence 556666632222 22 34567788999999988765 66666533 3899999987542110 112234555555
Q ss_pred CCCCcEE
Q 027062 95 GPTVPLF 101 (229)
Q Consensus 95 ~~~~Pvl 101 (229)
+.++||+
T Consensus 177 g~~i~Vi 183 (579)
T 3bul_A 177 GFTIPLL 183 (579)
T ss_dssp TCCSCEE
T ss_pred CCCCeEE
Confidence 5568874
No 378
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=29.91 E-value=44 Score=25.28 Aligned_cols=77 Identities=5% Similarity=-0.036 Sum_probs=44.4
Q ss_pred ceEEEEECCCchhHH--HHHHHHHcCCEEEEEeCCccCHHHHhccC--CCEEEECCCCCCCCCc-------chHHHHHHH
Q 027062 25 NPIIVIDNYDSFTYN--LCQYMGELGYHFEVYRNDELTVEELKRKN--PRGVLISPGPGAPQDS-------GISLQTVLE 93 (229)
Q Consensus 25 ~~ilvid~~~~~~~~--~~~~l~~~g~~~~v~~~~~~~~~~l~~~~--~dgiii~GG~~~~~~~-------~~~~~~i~~ 93 (229)
-+|.+.+....+.+. .+..|.+.|+++.++... .-..-+...+ +|.+|+ | ...+... +-+.-.+.+
T Consensus 5 ~~V~v~EsRP~~qG~rlta~eL~~~gI~vtlI~Ds-a~~~~m~~~~~~Vd~Viv-G-Ad~v~~nG~v~nkiGT~~~Al~A 81 (191)
T 1w2w_B 5 GHVFPLETRPYNQGSRLTAYELVYDKIPSTLITDS-SIAYRIRTSPIPIKAAFV-G-ADRIVRNGDTANKIGTLQLAVIC 81 (191)
T ss_dssp EEEEEBCCTTTTHHHHTHHHHHHHHTCCBEEBCGG-GHHHHHHHCSSCEEEEEE-C-CSEECTTSCEEEETTHHHHHHHH
T ss_pred EEEEEcCCCCccccHHHHHHHHHHcCCCEEEEech-HHHHHHHhCCCCCCEEEE-C-ccEEecCCCEEecccHHHHHHHH
Confidence 356677766666653 578899999999988732 2112233323 677766 3 3333222 333333433
Q ss_pred hCCCCcEEEEe
Q 027062 94 LGPTVPLFGVC 104 (229)
Q Consensus 94 ~~~~~PvlGIC 104 (229)
...++|++-.|
T Consensus 82 k~~~vPf~V~a 92 (191)
T 1w2w_B 82 KQFGIKFFVVA 92 (191)
T ss_dssp HHHTCEEEEEC
T ss_pred HHcCCCEEEec
Confidence 33469999877
No 379
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=29.81 E-value=1.7e+02 Score=21.55 Aligned_cols=56 Identities=13% Similarity=0.182 Sum_probs=35.9
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeCC----------------ccC-HHHHhcc--CCCEEEECCCCCC
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND----------------ELT-VEELKRK--NPRGVLISPGPGA 80 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~----------------~~~-~~~l~~~--~~dgiii~GG~~~ 80 (229)
|+|+|....+..-..+++.|.+.|.++..+.-. -.+ .+.+... ++|.||-.-|...
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~~~ 75 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQYNNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGSGG 75 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCCTTEEEEECCTTSCHHHHHTTTTTCSEEEECCCCTT
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhcCCceEEEecccCCHHHHHHHHcCCCEEEECCcCCC
Confidence 578888864444466888888889888765322 122 3344432 6788888877654
No 380
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=29.73 E-value=1e+02 Score=22.08 Aligned_cols=29 Identities=24% Similarity=0.161 Sum_probs=17.4
Q ss_pred ceEEEEECC---CchhHHHHHHHHHcCCEEEEE
Q 027062 25 NPIIVIDNY---DSFTYNLCQYMGELGYHFEVY 54 (229)
Q Consensus 25 ~~ilvid~~---~~~~~~~~~~l~~~g~~~~v~ 54 (229)
|+|++|..- .+.+..+++++.+ +++++.+
T Consensus 4 Mkilii~~S~r~~g~t~~la~~~~~-~~~~~~~ 35 (184)
T 1rli_A 4 MKIAVINGGTRSGGNTDVLAEKAVQ-GFDAEHI 35 (184)
T ss_dssp -CEEEEESSCSSCCHHHHHHHHHHT-TTCCEEE
T ss_pred cEEEEEECCCCCCccHHHHHHHHHc-CCeEEEE
Confidence 579998753 2567777777654 4444443
No 381
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=29.28 E-value=1.4e+02 Score=23.52 Aligned_cols=33 Identities=12% Similarity=0.198 Sum_probs=21.5
Q ss_pred ceEEEEECC---CchhHHH----HHHHHHcCCEEEEEeCC
Q 027062 25 NPIIVIDNY---DSFTYNL----CQYMGELGYHFEVYRND 57 (229)
Q Consensus 25 ~~ilvid~~---~~~~~~~----~~~l~~~g~~~~v~~~~ 57 (229)
|+||||..- .+++..+ ++.+++.|.+++++...
T Consensus 3 mkiLiI~gSpr~~s~t~~la~~~~~~l~~~g~eV~~~dL~ 42 (273)
T 1d4a_A 3 RRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLY 42 (273)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETT
T ss_pred CEEEEEEeCCCCccHHHHHHHHHHHHHHhCCCeEEEEEcc
Confidence 589999753 2344444 44456679999887653
No 382
>1jg7_A BGT, DNA beta-glucosyltransferase; glycosyltransferase; HET: DNA UDP; 1.65A {Enterobacteria phage T4} SCOP: c.87.1.1 PDB: 1bgu_A* 1bgt_A* 1ixy_A* 1c3j_A* 1jej_A* 1jg6_A* 1j39_A* 1jiu_A* 1jiv_A* 1jix_A* 1m5r_A* 1nvk_A* 1qkj_A* 1sxp_A* 1sxq_A* 2bgt_A 2bgu_A* 1nzd_A* 1nzf_A*
Probab=28.96 E-value=1e+02 Score=24.26 Aligned_cols=55 Identities=11% Similarity=0.218 Sum_probs=36.3
Q ss_pred ceEEEEECCCch------h----HHHHHHHHHcCCEEEEEeCCc----cCHHHHhccCCCEEEECCCCC
Q 027062 25 NPIIVIDNYDSF------T----YNLCQYMGELGYHFEVYRNDE----LTVEELKRKNPRGVLISPGPG 79 (229)
Q Consensus 25 ~~ilvid~~~~~------~----~~~~~~l~~~g~~~~v~~~~~----~~~~~l~~~~~dgiii~GG~~ 79 (229)
|+|+||+.+... + --+.+.+.+.|..+.++.... ...++++.-.||-+++....-
T Consensus 1 mkiai~n~gnni~~fkt~p~setiyl~~~~~~mgl~vd~is~k~~iy~~~fd~vd~n~ydr~~vvn~s~ 69 (351)
T 1jg7_A 1 MKIAIINMGNNVINFKTVPSSETIYLFKVISEMGLNVDIISLKNGVYTKSFDEVDVNDYDRLIVVNSSI 69 (351)
T ss_dssp CCEEEEESSSCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEESSCCSSEEEGGGSCGGGCSEEEEECCCC
T ss_pred CceEEEecCCccccceecCccceeeHHHHHHHcCCCeeEEEeccceeeeecccCCccccceEEEEecee
Confidence 678898765331 1 226678899999999987432 334555444689988876543
No 383
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=28.93 E-value=47 Score=24.80 Aligned_cols=32 Identities=13% Similarity=0.071 Sum_probs=22.9
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEe
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYR 55 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~ 55 (229)
+|+|+|....+..-..+++.|.+.|.++..+.
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~ 35 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVV 35 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTCEEEEEC
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEE
Confidence 46888887533334568888988898887663
No 384
>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}
Probab=28.91 E-value=64 Score=25.70 Aligned_cols=32 Identities=9% Similarity=0.184 Sum_probs=21.2
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEeC
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN 56 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~ 56 (229)
++++|....++.-..+++.|.+.|+++.+...
T Consensus 42 k~vlVTGas~GIG~aia~~la~~G~~V~~~~r 73 (293)
T 3rih_A 42 RSVLVTGGTKGIGRGIATVFARAGANVAVAAR 73 (293)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEEC
Confidence 34455454334556788889899998877653
No 385
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=28.54 E-value=1.6e+02 Score=21.91 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=28.7
Q ss_pred CceEEEEECCC-------chhHHH----HHHHHHcCCEEEEEeCCc-cCHHHHhc-c-CCCEEEEC
Q 027062 24 KNPIIVIDNYD-------SFTYNL----CQYMGELGYHFEVYRNDE-LTVEELKR-K-NPRGVLIS 75 (229)
Q Consensus 24 ~~~ilvid~~~-------~~~~~~----~~~l~~~g~~~~v~~~~~-~~~~~l~~-~-~~dgiii~ 75 (229)
.-+||||.... ++...+ .+.+++.|.+++++...+ .+.+++.+ . ..|+|||.
T Consensus 12 ~~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~g~~v~~~dL~~~~d~~~~~~~l~~AD~iV~~ 77 (204)
T 2amj_A 12 SSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRADSDYDVKAEVQNFLWADVVIWQ 77 (204)
T ss_dssp CCEEEEEECCC------CHHHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHHCSEEEEE
T ss_pred CcCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHcCCEEEEEeCCccccHHHHHHHHHhCCEEEEE
Confidence 45788886532 343333 444555699999887542 22222211 1 45888873
No 386
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=28.54 E-value=2.3e+02 Score=22.74 Aligned_cols=55 Identities=11% Similarity=0.076 Sum_probs=29.3
Q ss_pred CCceEEEEECC-------CchhHHHHHHHHHc--CCEEEEEeCCccC---H----HHHhccCCCEEEECCC
Q 027062 23 NKNPIIVIDNY-------DSFTYNLCQYMGEL--GYHFEVYRNDELT---V----EELKRKNPRGVLISPG 77 (229)
Q Consensus 23 ~~~~ilvid~~-------~~~~~~~~~~l~~~--g~~~~v~~~~~~~---~----~~l~~~~~dgiii~GG 77 (229)
.+..|.||-.. +.|...+.+.+++. |+.+.+...+... . +.+...++||||+.+.
T Consensus 67 ~s~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 137 (366)
T 3h5t_A 67 RAGAIGVLLTEDLTYAFEDMASVDFLAGVAQAAGDTQLTLIPASPASSVDHVSAQQLVNNAAVDGVVIYSV 137 (366)
T ss_dssp -CCEEEEEESSCTTHHHHSHHHHHHHHHHHHHSSSCEEEEEECCCCTTCCHHHHHHHHHTCCCSCEEEESC
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHhhCCEEEEEcCCCccHHHHHHHHHHHhCCCCEEEEecC
Confidence 34567766432 12333344444322 8888877654211 1 2233447999999864
No 387
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1 c.65.1.1
Probab=28.30 E-value=73 Score=25.38 Aligned_cols=54 Identities=28% Similarity=0.300 Sum_probs=31.2
Q ss_pred CCceEEEEECCCchhHHHHHHHHH--cCCEEEEEeC-CccCHHHHhccCCCEEEECC
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGE--LGYHFEVYRN-DELTVEELKRKNPRGVLISP 76 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~--~g~~~~v~~~-~~~~~~~l~~~~~dgiii~G 76 (229)
..|+|+++.....+.....+...+ .|.++.++.. ++...+.+...++|.+|+.|
T Consensus 29 ~~m~ill~~~~~~~~~l~q~l~~~l~~~h~V~~~~~~~~~~~~~L~~~~pDliv~~~ 85 (260)
T 1zgh_A 29 GLMNIIIATTKSWNIKNAQKFKKENESKYNTTIITNKDELTFEKVKLINPEYILFPH 85 (260)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHHHTTTTEEEEEECSGGGCCHHHHHHHCCSEEEESS
T ss_pred CceEEEEECChHHHHHHHHHHHHHhcccCceEEEeCCCHHHHHHHHhcCCCEEEEec
Confidence 458898887643443333332222 4566666643 22345667777899888875
No 388
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=28.29 E-value=85 Score=22.66 Aligned_cols=34 Identities=3% Similarity=-0.050 Sum_probs=26.5
Q ss_pred CCceEEEEECCCchhHHHHHHHHHc-CCEEEEEeCC
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYRND 57 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~-g~~~~v~~~~ 57 (229)
..++|+|+.. +..-..+++.|.+. |.++.++..+
T Consensus 38 ~~~~v~IiG~-G~~G~~~a~~L~~~~g~~V~vid~~ 72 (183)
T 3c85_A 38 GHAQVLILGM-GRIGTGAYDELRARYGKISLGIEIR 72 (183)
T ss_dssp TTCSEEEECC-SHHHHHHHHHHHHHHCSCEEEEESC
T ss_pred CCCcEEEECC-CHHHHHHHHHHHhccCCeEEEEECC
Confidence 3568999974 55667788999998 9999888654
No 389
>3edo_A Flavoprotein, putative Trp repressor binding protein; YP_193882.1, flavoprotein in complex with FMN, structural genomics; HET: MSE FMN; 1.20A {Lactobacillus acidophilus ncfm}
Probab=28.26 E-value=1.5e+02 Score=20.68 Aligned_cols=28 Identities=7% Similarity=0.245 Sum_probs=17.8
Q ss_pred ceEEEEEC-CCchhHHHHHHH-HHc-CCEEE
Q 027062 25 NPIIVIDN-YDSFTYNLCQYM-GEL-GYHFE 52 (229)
Q Consensus 25 ~~ilvid~-~~~~~~~~~~~l-~~~-g~~~~ 52 (229)
++|+|+=+ ..+.+..+++.+ +.+ +.++.
T Consensus 4 ~kilIvY~S~tGnT~~iA~~Ia~~l~~~~~~ 34 (151)
T 3edo_A 4 KKTLILYYSWSGETKKMAEKINSEIKDSELK 34 (151)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHSTTCEEE
T ss_pred CcEEEEEECCCCcHHHHHHHHHHhccCCCEE
Confidence 46777743 344677788888 555 66643
No 390
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=27.98 E-value=45 Score=25.08 Aligned_cols=31 Identities=10% Similarity=0.053 Sum_probs=21.4
Q ss_pred ceEEEEECCC-----chhHHHHHHHHHcCCEEEEEe
Q 027062 25 NPIIVIDNYD-----SFTYNLCQYMGELGYHFEVYR 55 (229)
Q Consensus 25 ~~ilvid~~~-----~~~~~~~~~l~~~g~~~~v~~ 55 (229)
|+||||.... .+...+.+.+++.|.+++++.
T Consensus 2 mkiLiI~gsp~~~~s~l~~~l~~~~~~~g~ev~~~d 37 (192)
T 3f2v_A 2 PKTLIILAHPNISQSTVHKHWSDAVRQHTDRFTVHE 37 (192)
T ss_dssp CCEEEEECCTTGGGCSHHHHHHHHHTTCTTTEEEEE
T ss_pred CEEEEEEeCCCccHHHHHHHHHHHHHhCCCeEEEEE
Confidence 6788886421 234557777778888888775
No 391
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=27.69 E-value=2.2e+02 Score=22.32 Aligned_cols=85 Identities=12% Similarity=0.111 Sum_probs=42.1
Q ss_pred ccccccCCCceEEEEECCCchhHHHHHHHHH-c-CCEEEEE------eCCccCHHH-----------HhccCCCEEEECC
Q 027062 16 DDKKSKNNKNPIIVIDNYDSFTYNLCQYMGE-L-GYHFEVY------RNDELTVEE-----------LKRKNPRGVLISP 76 (229)
Q Consensus 16 ~~~~~~~~~~~ilvid~~~~~~~~~~~~l~~-~-g~~~~v~------~~~~~~~~~-----------l~~~~~dgiii~G 76 (229)
.++..|+..++|.|+|.+-+- -.+.+.+.+ . +..+..+ ++...+.++ +...++|+|++.=
T Consensus 4 ~~~~~~~~~~~IGv~DsG~Gg-ltv~~~i~~~~P~~~~iy~~D~~~~Pyg~~s~~~i~~~~~~~~~~L~~~g~d~iviaC 82 (273)
T 2oho_A 4 PRGSHMMDTRPIGFLDSGVGG-LTVVCELIRQLPHEKIVYIGDSARAPYGPRPKKQIKEYTWELVNFLLTQNVKMIVFAC 82 (273)
T ss_dssp TTSSCBCCCCCEEEEESSSTT-HHHHHHHHHHCTTCCEEEEECGGGCCCTTSCHHHHHHHHHHHHHHHHTTTCSEEEECC
T ss_pred cCcccccCCCcEEEEeCCCcH-HHHHHHHHHHCCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeC
Confidence 344444444689999975332 234444433 3 2333322 111122222 3344789999864
Q ss_pred CCCCCCCcchHHHHHHHhCCCCcEEEEehh
Q 027062 77 GPGAPQDSGISLQTVLELGPTVPLFGVCMG 106 (229)
Q Consensus 77 G~~~~~~~~~~~~~i~~~~~~~PvlGIC~G 106 (229)
...+ ..+++.+++.- ++||+||.--
T Consensus 83 NTas----~~~l~~lr~~~-~iPvigi~ep 107 (273)
T 2oho_A 83 NTAT----AVAWEEVKAAL-DIPVLGVVLP 107 (273)
T ss_dssp HHHH----HHHHHHHHHHC-SSCEEESHHH
T ss_pred chHh----HHHHHHHHHhC-CCCEEeccHH
Confidence 2211 12355665543 5999997643
No 392
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=27.68 E-value=2.1e+02 Score=22.33 Aligned_cols=58 Identities=16% Similarity=0.174 Sum_probs=37.2
Q ss_pred CceEEEEECCCchh-HHHHHHHHHcCCEEEEEeCC--------------ccCHHHHhcc--CCCEEEECCCCCCCC
Q 027062 24 KNPIIVIDNYDSFT-YNLCQYMGELGYHFEVYRND--------------ELTVEELKRK--NPRGVLISPGPGAPQ 82 (229)
Q Consensus 24 ~~~ilvid~~~~~~-~~~~~~l~~~g~~~~v~~~~--------------~~~~~~l~~~--~~dgiii~GG~~~~~ 82 (229)
+|+|+|... .++. ..+++.|.+.|.++..+.-. +...+.+... ++|.||-+.|.....
T Consensus 2 ~~~vlVtGa-tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~d~Vih~a~~~~~~ 76 (311)
T 3m2p_A 2 SLKIAVTGG-TGFLGQYVVESIKNDGNTPIILTRSIGNKAINDYEYRVSDYTLEDLINQLNDVDAVVHLAATRGSQ 76 (311)
T ss_dssp CCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCCC-----CCEEEECCCCHHHHHHHTTTCSEEEECCCCCCSS
T ss_pred CCEEEEECC-CcHHHHHHHHHHHhCCCEEEEEeCCCCcccCCceEEEEccccHHHHHHhhcCCCEEEEccccCCCC
Confidence 367888885 4554 56888888889988765322 1112333322 689999988866543
No 393
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=27.21 E-value=75 Score=26.17 Aligned_cols=34 Identities=6% Similarity=0.117 Sum_probs=26.0
Q ss_pred CCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeC
Q 027062 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN 56 (229)
Q Consensus 22 ~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~ 56 (229)
+.+++|+|+.. +.....+.++++++|+++..+..
T Consensus 9 ~~~~~ili~g~-g~~~~~~~~a~~~~G~~v~~~~~ 42 (391)
T 1kjq_A 9 PAATRVMLLGS-GELGKEVAIECQRLGVEVIAVDR 42 (391)
T ss_dssp TTCCEEEEESC-SHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEEC
Confidence 45678999975 34456788899999999887764
No 394
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=26.75 E-value=25 Score=28.63 Aligned_cols=80 Identities=14% Similarity=0.202 Sum_probs=40.4
Q ss_pred CCceEEEEECCCchhHHHHHHHH-HcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCcc-hHHHHHHHh--CCCC
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMG-ELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDSG-ISLQTVLEL--GPTV 98 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~-~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~~-~~~~~i~~~--~~~~ 98 (229)
...+|+|||........+...|+ ..|+++..........+.+....+|.||+= -..+...+ .+++.+++. ...+
T Consensus 17 ~~~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~~~~~dlvl~D--~~mp~~~G~~~~~~l~~~~~~~~~ 94 (358)
T 3bre_A 17 GAVMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQIKPTVILQD--LVMPGVDGLTLLAAYRGNPATRDI 94 (358)
T ss_dssp -CEEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHHHHCCSEEEEE--SBCSSSBHHHHHHHHTTSTTTTTS
T ss_pred cCceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHHhCCCCEEEEe--CCCCCCCHHHHHHHHhcCcccCCC
Confidence 34579999975556666777775 357776544321111222333367877662 11122222 234444432 2357
Q ss_pred cEEEEe
Q 027062 99 PLFGVC 104 (229)
Q Consensus 99 PvlGIC 104 (229)
||+-+.
T Consensus 95 ~ii~~s 100 (358)
T 3bre_A 95 PIIVLS 100 (358)
T ss_dssp CEEEEE
T ss_pred cEEEEe
Confidence 777654
No 395
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=26.71 E-value=1.6e+02 Score=23.47 Aligned_cols=34 Identities=12% Similarity=0.022 Sum_probs=24.4
Q ss_pred cCCCceEEEEECCCchh-HHHHHHHHHcCCEEEEEe
Q 027062 21 KNNKNPIIVIDNYDSFT-YNLCQYMGELGYHFEVYR 55 (229)
Q Consensus 21 ~~~~~~ilvid~~~~~~-~~~~~~l~~~g~~~~v~~ 55 (229)
+..+++|+|... .++. ..+++.|.+.|.++..+.
T Consensus 22 ~~~~~~vlVtGa-tG~iG~~l~~~L~~~g~~V~~~~ 56 (351)
T 3ruf_A 22 IFSPKTWLITGV-AGFIGSNLLEKLLKLNQVVIGLD 56 (351)
T ss_dssp HHSCCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCeEEEECC-CcHHHHHHHHHHHHCCCEEEEEe
Confidence 335678888886 4554 568888888898887654
No 396
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=26.67 E-value=72 Score=25.39 Aligned_cols=34 Identities=15% Similarity=0.084 Sum_probs=24.9
Q ss_pred CceEEEEECC-----------------Cc---hhHHHHHHHHHcCCEEEEEeCC
Q 027062 24 KNPIIVIDNY-----------------DS---FTYNLCQYMGELGYHFEVYRND 57 (229)
Q Consensus 24 ~~~ilvid~~-----------------~~---~~~~~~~~l~~~g~~~~v~~~~ 57 (229)
+|||+++... ++ +...+.+.|.+.|.++.++...
T Consensus 3 ~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~ 56 (342)
T 2iuy_A 3 PLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGAP 56 (342)
T ss_dssp CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCT
T ss_pred ccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 4789999754 11 2346788899999999988653
No 397
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Probab=26.42 E-value=1.5e+02 Score=24.49 Aligned_cols=80 Identities=11% Similarity=0.083 Sum_probs=47.4
Q ss_pred ccCCCceEEEEECCCchhH-HHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCCCCCCCCc-------chHHHHH
Q 027062 20 SKNNKNPIIVIDNYDSFTY-NLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPGPGAPQDS-------GISLQTV 91 (229)
Q Consensus 20 ~~~~~~~ilvid~~~~~~~-~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG~~~~~~~-------~~~~~~i 91 (229)
.++++-+|.+.+....+.+ ..+..|.+.|+++.++... .-..-+. ++|.+|+ |...+... +-+.-.+
T Consensus 163 ~~gk~~~V~v~EtRP~~qGrltA~eL~~~GI~vtlI~Ds-a~~~~M~--~Vd~Viv--GAd~V~anG~v~NKiGT~~lAl 237 (338)
T 3a11_A 163 EQGKDIKVIVTETRPKWQGKITAKELASYGIPVIYVVDS-AARHYMK--MTDKVVM--GADSITVNGAVINKIGTALIAL 237 (338)
T ss_dssp HTTCCCEEEEECCTTTTHHHHHHHHHHHTTCCEEEECGG-GTTTTGG--GCSEEEE--CCSEECTTSCEEEETTHHHHHH
T ss_pred HCCCeEEEEEeCCCCchhhHHHHHHHHhCCCCEEEEehH-HHHHHHH--hCCEEEE--CccEEecCCCEeecccHHHHHH
Confidence 3455677887776655554 4567788899999988732 1111222 5687776 33333222 3334444
Q ss_pred HHhCCCCcEEEEe
Q 027062 92 LELGPTVPLFGVC 104 (229)
Q Consensus 92 ~~~~~~~PvlGIC 104 (229)
.+...++|++-.|
T Consensus 238 ~Ak~~~vPfyV~a 250 (338)
T 3a11_A 238 TAKEHRVWTMIAA 250 (338)
T ss_dssp HHHHTTCEEEEEC
T ss_pred HHHHcCCCEEEec
Confidence 4444579999877
No 398
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=26.06 E-value=91 Score=21.96 Aligned_cols=32 Identities=16% Similarity=0.193 Sum_probs=22.6
Q ss_pred CceEEEEECC---CchhHHHHHHHHHcCCEEEEEe
Q 027062 24 KNPIIVIDNY---DSFTYNLCQYMGELGYHFEVYR 55 (229)
Q Consensus 24 ~~~ilvid~~---~~~~~~~~~~l~~~g~~~~v~~ 55 (229)
..+|+||... +.+-..+.+.|.+.|+++..+.
T Consensus 22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vn 56 (144)
T 2d59_A 22 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVN 56 (144)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEEC
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEEC
Confidence 5679999763 2345677888999999755443
No 399
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=26.02 E-value=1.6e+02 Score=23.99 Aligned_cols=55 Identities=5% Similarity=0.009 Sum_probs=36.5
Q ss_pred CCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCC
Q 027062 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77 (229)
Q Consensus 22 ~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG 77 (229)
-...+++||......-..++..|...|+++.+.+....+.++... +.|.||..=|
T Consensus 163 l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~~~-~ADIVI~Avg 217 (301)
T 1a4i_A 163 IAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEEVN-KGDILVVATG 217 (301)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHHHT-TCSEEEECCC
T ss_pred CCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCcccHHHHhc-cCCEEEECCC
Confidence 456789999974345567888899999999998755334433222 4576665433
No 400
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=25.79 E-value=98 Score=21.58 Aligned_cols=33 Identities=21% Similarity=0.231 Sum_probs=26.0
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCC
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND 57 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~ 57 (229)
+.+|+|+.. +..-..+++.|.+.|.++.++..+
T Consensus 3 ~~~vlI~G~-G~vG~~la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 3 KDHFIVCGH-SILAINTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCcEEEECC-CHHHHHHHHHHHHCCCCEEEEECC
Confidence 457889974 556677888999999999988754
No 401
>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}
Probab=25.71 E-value=69 Score=25.53 Aligned_cols=37 Identities=14% Similarity=0.041 Sum_probs=26.0
Q ss_pred ccCCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCC
Q 027062 20 SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND 57 (229)
Q Consensus 20 ~~~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~ 57 (229)
+|..+++|.||.. +..-..+.+.|.+.|.++.++..+
T Consensus 11 ~M~~~~~I~vIG~-G~mG~~~A~~l~~~G~~V~~~dr~ 47 (296)
T 3qha_A 11 HTTEQLKLGYIGL-GNMGAPMATRMTEWPGGVTVYDIR 47 (296)
T ss_dssp ----CCCEEEECC-STTHHHHHHHHTTSTTCEEEECSS
T ss_pred cccCCCeEEEECc-CHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3444678999986 455567888898999999887644
No 402
>1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1
Probab=25.71 E-value=1.4e+02 Score=21.60 Aligned_cols=48 Identities=6% Similarity=0.088 Sum_probs=27.2
Q ss_pred eEEEEE-CCCchhHHHHHHHHH-cC--CEEEEEeCCccCHHHHhccCCCEEEEC
Q 027062 26 PIIVID-NYDSFTYNLCQYMGE-LG--YHFEVYRNDELTVEELKRKNPRGVLIS 75 (229)
Q Consensus 26 ~ilvid-~~~~~~~~~~~~l~~-~g--~~~~v~~~~~~~~~~l~~~~~dgiii~ 75 (229)
+|+|+= ...+.+..+++.+.+ ++ +++.++...+.+.+++. ++|.|||.
T Consensus 2 kilI~Y~S~tGnT~~iA~~ia~~l~~~~~v~~~~~~~~~~~~l~--~~d~iilg 53 (179)
T 1yob_A 2 KIGLFFGSNTGKTRKVAKSIKKRFDDETMSDALNVNRVSAEDFA--QYQFLILG 53 (179)
T ss_dssp CEEEEECCSSSHHHHHHHHHHTTSCTTTBCCCEEGGGCCHHHHH--TCSEEEEE
T ss_pred eEEEEEECCCcHHHHHHHHHHHHhCCCCceEEEEhhhCCHHHHh--cCCEEEEE
Confidence 566662 233466777777754 33 34555554444555665 56888774
No 403
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=25.60 E-value=1.6e+02 Score=22.57 Aligned_cols=56 Identities=18% Similarity=0.236 Sum_probs=32.3
Q ss_pred CceEEEEECC-CchhH----HHHHHHHHcCCEEEEEeCCccC------HHHHhccCCCEEEECCCCC
Q 027062 24 KNPIIVIDNY-DSFTY----NLCQYMGELGYHFEVYRNDELT------VEELKRKNPRGVLISPGPG 79 (229)
Q Consensus 24 ~~~ilvid~~-~~~~~----~~~~~l~~~g~~~~v~~~~~~~------~~~l~~~~~dgiii~GG~~ 79 (229)
+.+|.++-.. +.|.. .+.+.+++.|+++.+...+... .+.+...++||||+.+...
T Consensus 8 ~~~Igvi~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 74 (288)
T 2qu7_A 8 SNIIAFIVPDQNPFFTEVLTEISHECQKHHLHVAVASSEENEDKQQDLIETFVSQNVSAIILVPVKS 74 (288)
T ss_dssp EEEEEEEESSCCHHHHHHHHHHHHHHGGGTCEEEEEECTTCHHHHHHHHHHHHHTTEEEEEECCSSS
T ss_pred CCEEEEEECCCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCccEEEEecCCC
Confidence 4467666432 22332 3456667789999887654211 1123334789999987643
No 404
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=25.45 E-value=1.7e+02 Score=23.54 Aligned_cols=56 Identities=9% Similarity=0.141 Sum_probs=37.9
Q ss_pred cCCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCC
Q 027062 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77 (229)
Q Consensus 21 ~~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG 77 (229)
.-...+++||......-..++..|...|+.+.+.+......++... +.|.||..=|
T Consensus 157 ~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t~~L~~~~~-~ADIVI~Avg 212 (285)
T 3p2o_A 157 DLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYTR-QADLIIVAAG 212 (285)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHHHHHT-TCSEEEECSS
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCchhHHHHhh-cCCEEEECCC
Confidence 3456789999964445677888899999999998765334443322 4577776544
No 405
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=25.19 E-value=15 Score=34.24 Aligned_cols=50 Identities=14% Similarity=0.169 Sum_probs=31.8
Q ss_pred HhccCCCEEEECCCCCCCCCcchHHHHHHHhC-CCCcEEEE-------------ehhHHHHHHH
Q 027062 64 LKRKNPRGVLISPGPGAPQDSGISLQTVLELG-PTVPLFGV-------------CMGLQCIGEA 113 (229)
Q Consensus 64 l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~-~~~PvlGI-------------C~G~Qlla~a 113 (229)
+++.++|++|+-||.++......+.+...... .++|+.|| |+|+.-....
T Consensus 485 l~~~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgiPkTIDNDl~gTD~TiGfdTA~~~ 548 (762)
T 3o8l_A 485 ITKFNIQGLVIIGGFEAYTGGLELMEGRKQFDELCIPFVVIPATVSNNVPGSDFSVGADTALNT 548 (762)
T ss_dssp HHHTTCCCEEEEESHHHHHHHHHHHHHHHHCSTTCSCEEEEEBCTTCCCTTCSCCBTHHHHHHH
T ss_pred HHHcCCCEEEEeCCchHHHHHHHHHHHHHhccccCCCEEeeccccCCCCCCCcCCCChHHHHHH
Confidence 44557888988888765433322222222232 36899998 9999887664
No 406
>3g68_A Putative phosphosugar isomerase; SIS domain, double-SIS DOMA protein, structural genomics, joint center for structural G JCSG; HET: MSE CIT; 1.80A {Clostridium difficile}
Probab=25.08 E-value=1.1e+02 Score=25.27 Aligned_cols=81 Identities=14% Similarity=0.059 Sum_probs=41.5
Q ss_pred CCCceEEEEECCCchh-H-HHHHHHHH-cCCEEEEEeCCccCHHHHhcc-CCCEEEECCCCCCCCCcchHHHHHHH-hCC
Q 027062 22 NNKNPIIVIDNYDSFT-Y-NLCQYMGE-LGYHFEVYRNDELTVEELKRK-NPRGVLISPGPGAPQDSGISLQTVLE-LGP 96 (229)
Q Consensus 22 ~~~~~ilvid~~~~~~-~-~~~~~l~~-~g~~~~v~~~~~~~~~~l~~~-~~dgiii~GG~~~~~~~~~~~~~i~~-~~~ 96 (229)
....+|.++.++.++. . ....++++ .|..+.+....+......... .-|.+|...-.|. ....+..+.. .++
T Consensus 32 ~~~~~I~i~G~G~S~~~a~~~~~~l~~~~g~~~~~~~~se~~~~~~~~~~~~dlvI~iS~SG~---T~e~l~a~~~ak~~ 108 (352)
T 3g68_A 32 TNLKKIIITGSGTSYHSGVQVQPYLQNLLDIDVVKMYPFMITEDTFKFDNENTLVVGVSQGGS---SYSTYNAMKLAEDK 108 (352)
T ss_dssp SCCSEEEEECSHHHHHHHHHHHHHHHHHCSSEEEEECGGGCCGGGGSSCCTTEEEEEEESSSC---CHHHHHHHHHHHHT
T ss_pred cCCCEEEEEEeehHHHHHHHHHHHHHHHhCCcEEEEcchhhhhcccCCCCCCcEEEEEeCCCC---CHHHHHHHHHHHHC
Confidence 4567899999987754 2 24455666 588888775433322111111 1133333322222 2333333332 224
Q ss_pred CCcEEEEeh
Q 027062 97 TVPLFGVCM 105 (229)
Q Consensus 97 ~~PvlGIC~ 105 (229)
+.++++||.
T Consensus 109 ga~~iaIT~ 117 (352)
T 3g68_A 109 GCKIASMAG 117 (352)
T ss_dssp TCEEEEEES
T ss_pred CCCEEEEeC
Confidence 688888884
No 407
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=24.99 E-value=2.6e+02 Score=22.23 Aligned_cols=78 Identities=14% Similarity=0.147 Sum_probs=45.4
Q ss_pred CCceEEEE-ECCCchh----HHHHHHHHHcCCEEEEEe--CCccC----HHHHhccCCCEEEECCCCCCCCCcchHHHHH
Q 027062 23 NKNPIIVI-DNYDSFT----YNLCQYMGELGYHFEVYR--NDELT----VEELKRKNPRGVLISPGPGAPQDSGISLQTV 91 (229)
Q Consensus 23 ~~~~ilvi-d~~~~~~----~~~~~~l~~~g~~~~v~~--~~~~~----~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i 91 (229)
...+|++| +..+.+. ..+.+.+++.|.++.... ....+ ...+...++|+|++.+.. .+...+++.+
T Consensus 148 g~~~iaii~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~---~~a~~~~~~~ 224 (366)
T 3td9_A 148 GAKRVVVFTDVEQDYSVGLSNFFINKFTELGGQVKRVFFRSGDQDFSAQLSVAMSFNPDAIYITGYY---PEIALISRQA 224 (366)
T ss_dssp CCCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCCHHHHHHHHHTCCSEEEECSCH---HHHHHHHHHH
T ss_pred CCcEEEEEEeCCCcHHHHHHHHHHHHHHHCCCEEEEEEeCCCCccHHHHHHHHHhcCCCEEEEccch---hHHHHHHHHH
Confidence 45688888 4333343 346677888899875332 21111 233444578999986532 1222345666
Q ss_pred HHhCCCCcEEEE
Q 027062 92 LELGPTVPLFGV 103 (229)
Q Consensus 92 ~~~~~~~PvlGI 103 (229)
++.+-..|++|.
T Consensus 225 ~~~g~~~~~~~~ 236 (366)
T 3td9_A 225 RQLGFTGYILAG 236 (366)
T ss_dssp HHTTCCSEEEEC
T ss_pred HHcCCCceEEee
Confidence 666667898874
No 408
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=24.91 E-value=75 Score=27.03 Aligned_cols=36 Identities=6% Similarity=0.242 Sum_probs=24.2
Q ss_pred cCCCceEEEEECC----------------Cc---hhHHHHHHHHHcCCEEEEEeC
Q 027062 21 KNNKNPIIVIDNY----------------DS---FTYNLCQYMGELGYHFEVYRN 56 (229)
Q Consensus 21 ~~~~~~ilvid~~----------------~~---~~~~~~~~l~~~g~~~~v~~~ 56 (229)
|..+|||++|... ++ +...+.+.|.+.|.++.++..
T Consensus 4 m~~~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~ 58 (499)
T 2r60_A 4 MTRIKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEMGVQVDIITR 58 (499)
T ss_dssp ---CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred ccccceEEEEecCCCccccccccCCCCCCCCeeehHHHHHHHHHhcCCeEEEEeC
Confidence 4446899999752 11 235678888899999998754
No 409
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=24.91 E-value=1.3e+02 Score=23.86 Aligned_cols=80 Identities=13% Similarity=0.071 Sum_probs=41.5
Q ss_pred cCCCceEEEEECCCc-h----hHHHHHHHHHcCCEEEEEeCCccC-HHH-Hh--ccCCCEEEECCCCCCCCCcchHHHHH
Q 027062 21 KNNKNPIIVIDNYDS-F----TYNLCQYMGELGYHFEVYRNDELT-VEE-LK--RKNPRGVLISPGPGAPQDSGISLQTV 91 (229)
Q Consensus 21 ~~~~~~ilvid~~~~-~----~~~~~~~l~~~g~~~~v~~~~~~~-~~~-l~--~~~~dgiii~GG~~~~~~~~~~~~~i 91 (229)
.+...+|.||-+.+. . ...+.+.++..|+++......... ... +. ..+.|+++++...... .....+
T Consensus 137 ~P~~k~vgvi~~~~~~~s~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~l~~~~d~i~~~~d~~~~----~~~~~i 212 (302)
T 3lkv_A 137 LPNVKSIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEATALKSADVQSATQAIAEKSDVIYALIDNTVA----SAIEGM 212 (302)
T ss_dssp STTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEEEECSSGGGHHHHHHHHHTTCSEEEECSCHHHH----HTHHHH
T ss_pred CCCCCEEEEEeCCCcccHHHHHHHHHHHHHHcCCEEEEEecCChHHHHHHHHhccCCeeEEEEeCCcchh----hHHHHH
Confidence 456678888865332 1 123556667789998876643211 111 11 1267888876422110 112222
Q ss_pred H--HhCCCCcEEEEe
Q 027062 92 L--ELGPTVPLFGVC 104 (229)
Q Consensus 92 ~--~~~~~~PvlGIC 104 (229)
. ....++|++|.-
T Consensus 213 ~~~~~~~~iPv~~~~ 227 (302)
T 3lkv_A 213 IVAANQAKTPVFGAA 227 (302)
T ss_dssp HHHHHHTTCCEEESS
T ss_pred HHHHhhcCCceeecc
Confidence 2 123579999853
No 410
>3soz_A ORF 245 protein, cytoplasmic protein STM1381; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.60A {Salmonella enterica subsp}
Probab=24.84 E-value=97 Score=24.42 Aligned_cols=36 Identities=17% Similarity=0.146 Sum_probs=27.2
Q ss_pred HHHHHHHHcCCEEEEEeCCc----c--CHHHHhccCCCEEEECC
Q 027062 39 NLCQYMGELGYHFEVYRNDE----L--TVEELKRKNPRGVLISP 76 (229)
Q Consensus 39 ~~~~~l~~~g~~~~v~~~~~----~--~~~~l~~~~~dgiii~G 76 (229)
.+.++|+..|+++..++.++ . +.++|. +||.||+..
T Consensus 37 ~~~~aL~~~~~~V~~i~~~~~~~~fP~~~~~L~--~yDvIIl~d 78 (248)
T 3soz_A 37 YLLSCLRQGNIDVDYMPAHIVQTRFPQTAEALA--CYDAIVISD 78 (248)
T ss_dssp HHHHHHTTTTCEEEEEETTHHHHSCCCSHHHHH--TCSEEEEES
T ss_pred HHHHHHhcCCceeEEeCchhhhhhCCCChHHHh--cCCEEEEcC
Confidence 48889999999999998753 1 235555 679999973
No 411
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=24.68 E-value=65 Score=21.83 Aligned_cols=33 Identities=12% Similarity=0.156 Sum_probs=25.1
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCC
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND 57 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~ 57 (229)
+++|+|+.. +..-..+.+.|.+.|.++.++..+
T Consensus 6 ~~~v~I~G~-G~iG~~~a~~l~~~g~~v~~~d~~ 38 (144)
T 2hmt_A 6 NKQFAVIGL-GRFGGSIVKELHRMGHEVLAVDIN 38 (144)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTCCCEEEESC
T ss_pred CCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCC
Confidence 346999986 566677888898899888777543
No 412
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=24.64 E-value=69 Score=25.56 Aligned_cols=32 Identities=9% Similarity=0.098 Sum_probs=25.9
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeCC
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND 57 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~ 57 (229)
+|+|+|+..+ ....+.+++++.|+++.++..+
T Consensus 2 ~m~Ililg~g--~~~~l~~a~~~~G~~v~~~~~~ 33 (334)
T 2r85_A 2 KVRIATYASH--SALQILKGAKDEGFETIAFGSS 33 (334)
T ss_dssp CSEEEEESST--THHHHHHHHHHTTCCEEEESCG
T ss_pred ceEEEEECCh--hHHHHHHHHHhCCCEEEEEECC
Confidence 5789999975 5567889999999999887654
No 413
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=24.62 E-value=84 Score=25.04 Aligned_cols=34 Identities=15% Similarity=0.143 Sum_probs=23.8
Q ss_pred cCCCceEEEEECCCchhHHHHHHHHHcCCEEEEE
Q 027062 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVY 54 (229)
Q Consensus 21 ~~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~ 54 (229)
|..+|+|+|....+..-..+++.|.+.|.++...
T Consensus 2 M~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~ 35 (341)
T 3enk_A 2 MSTKGTILVTGGAGYIGSHTAVELLAHGYDVVIA 35 (341)
T ss_dssp CCSSCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCcEEEEecCCcHHHHHHHHHHHHCCCcEEEE
Confidence 3455678888753334456888888889988765
No 414
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=24.31 E-value=1.8e+02 Score=23.47 Aligned_cols=56 Identities=9% Similarity=0.003 Sum_probs=37.8
Q ss_pred cCCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCC
Q 027062 21 KNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77 (229)
Q Consensus 21 ~~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG 77 (229)
.-...+++||......-..++..|...|+.+.+.+....+.++... +.|.||-.=|
T Consensus 158 ~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T~~L~~~~~-~ADIVI~Avg 213 (286)
T 4a5o_A 158 DLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTRDLADHVS-RADLVVVAAG 213 (286)
T ss_dssp CCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTCSCHHHHHH-TCSEEEECCC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCCcCHHHHhc-cCCEEEECCC
Confidence 3456789999964345677888899999999998764334443222 4577776544
No 415
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=24.27 E-value=62 Score=25.09 Aligned_cols=90 Identities=12% Similarity=0.013 Sum_probs=50.8
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCcc---CHHHH----hcc--CCCEEEECCCCCCCCCcchHHHHHHH
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDEL---TVEEL----KRK--NPRGVLISPGPGAPQDSGISLQTVLE 93 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~---~~~~l----~~~--~~dgiii~GG~~~~~~~~~~~~~i~~ 93 (229)
..++|+|.... . ...+.+.|++.|+++..++.-.. +.+++ ... +||.||++...+ ...+.+.+.+
T Consensus 7 ~g~~vlvtr~~-~-~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~l~~~~~~l~~~~d~iiftS~~a----V~~~~~~l~~ 80 (261)
T 1wcw_A 7 DAVRVAYAGLR-R-KEAFKALAEKLGFTPLLFPVQATEKVPVPEYRDQVRALAQGVDLFLATTGVG----VRDLLEAGKA 80 (261)
T ss_dssp -CCEEEECCST-T-HHHHHHHHHHTTCEEEECCCEEEEECCGGGGHHHHHHHHTCCSEEEECCHHH----HHHHHHHHHH
T ss_pred CCCEEEEeCCC-c-hHHHHHHHHHCCCcEEEeccEEEecCCHHHHHHHHHhhccCCCEEEEeCHHH----HHHHHHHHHH
Confidence 35688888754 3 67789999999999876553211 11221 122 589999986432 1222222222
Q ss_pred hC-------CCCcEEEEehhHHHHHHHhCCee
Q 027062 94 LG-------PTVPLFGVCMGLQCIGEAFGGKI 118 (229)
Q Consensus 94 ~~-------~~~PvlGIC~G~Qlla~alGg~v 118 (229)
.+ .+++++.|.-+-.-....+|-++
T Consensus 81 ~~~~~~~~l~~~~i~avG~~Ta~~l~~~G~~~ 112 (261)
T 1wcw_A 81 LGLDLEGPLAKAFRLARGAKAARALKEAGLPP 112 (261)
T ss_dssp TTCCCHHHHHHSEEEESSHHHHHHHHHTTCCC
T ss_pred hCchHHHHhcCCeEEEECHHHHHHHHHcCCCC
Confidence 11 13677766666554555677553
No 416
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=24.16 E-value=1.1e+02 Score=25.25 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=27.0
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEEEEeC
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN 56 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~ 56 (229)
..++|+||.. +.....+.++++++|+++.++..
T Consensus 11 ~~~~IlIlG~-G~lg~~la~aa~~lG~~viv~d~ 43 (377)
T 3orq_A 11 FGATIGIIGG-GQLGKMMAQSAQKMGYKVVVLDP 43 (377)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEC
Confidence 4568999985 46677899999999999988864
No 417
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=23.80 E-value=1.7e+02 Score=23.24 Aligned_cols=78 Identities=14% Similarity=0.256 Sum_probs=45.9
Q ss_pred CCceEEEEECCCchh----HHHHHHHHHcCCEEEEE---eCCccC----HHHHhccCCCEEEECCCCCCCCCcchHHHHH
Q 027062 23 NKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVY---RNDELT----VEELKRKNPRGVLISPGPGAPQDSGISLQTV 91 (229)
Q Consensus 23 ~~~~ilvid~~~~~~----~~~~~~l~~~g~~~~v~---~~~~~~----~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i 91 (229)
...+|++|...+.+. ..+.+.+++.|.++... .....+ ...+...++|+|++.+.. .+...+++.+
T Consensus 138 g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~~~d~i~~~~~~---~~a~~~~~~~ 214 (358)
T 3hut_A 138 GFTSVAVIGVTTDWGLSSAQAFRKAFELRGGAVVVNEEVPPGNRRFDDVIDEIEDEAPQAIYLAMAY---EDAAPFLRAL 214 (358)
T ss_dssp TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHHHCCSEEEEESCH---HHHHHHHHHH
T ss_pred CCCEEEEEecCcHHHHHHHHHHHHHHHHcCCEEEEEEecCCCCccHHHHHHHHHhcCCCEEEEccCc---hHHHHHHHHH
Confidence 557888885333333 34677788889987532 222111 123444478999886532 1122345666
Q ss_pred HHhCCCCcEEEE
Q 027062 92 LELGPTVPLFGV 103 (229)
Q Consensus 92 ~~~~~~~PvlGI 103 (229)
++.+-++|++|.
T Consensus 215 ~~~g~~~p~~~~ 226 (358)
T 3hut_A 215 RARGSALPVYGS 226 (358)
T ss_dssp HHTTCCCCEEEC
T ss_pred HHcCCCCcEEec
Confidence 677767999986
No 418
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=23.70 E-value=1.1e+02 Score=22.48 Aligned_cols=31 Identities=10% Similarity=-0.059 Sum_probs=21.9
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEe
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYR 55 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~ 55 (229)
|+|+|....+..-..+++.|.+.|.++..+.
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~ 31 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVV 31 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEE
Confidence 5788887643344568888888898887664
No 419
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=23.49 E-value=86 Score=23.14 Aligned_cols=79 Identities=11% Similarity=-0.004 Sum_probs=41.4
Q ss_pred ceEEEEECCCchh--HHHHHHHHHcCCEEEEEeCCccCHHHHhcc-CCCEEEECCCCCCCCCcchHHHHHHHhCCCCcEE
Q 027062 25 NPIIVIDNYDSFT--YNLCQYMGELGYHFEVYRNDELTVEELKRK-NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF 101 (229)
Q Consensus 25 ~~ilvid~~~~~~--~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~-~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~Pvl 101 (229)
.+|.++..+.+.. ..+...|...|..+..+...+.....+... .=|.+|+....+...+.-...+..++. +.|++
T Consensus 46 ~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dvvI~iS~sG~t~~~~~~~~~ak~~--g~~vi 123 (201)
T 3fxa_A 46 GKIVVAGCGTSGVAAKKLVHSFNCIERPAVFLTPSDAVHGTLGVLQKEDILILISKGGNTGELLNLIPACKTK--GSTLI 123 (201)
T ss_dssp SCEEEECCTHHHHHHHHHHHHHHHTTCCEEECCHHHHTTTGGGGCCTTCEEEEECSSSCCHHHHTTHHHHHHH--TCEEE
T ss_pred CcEEEEEecHHHHHHHHHHHHHHhcCCcEEEeCchHHHhhhhhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHc--CCeEE
Confidence 4899999876643 446666778898887664211111111111 125555544333222222223344443 58999
Q ss_pred EEeh
Q 027062 102 GVCM 105 (229)
Q Consensus 102 GIC~ 105 (229)
+|+-
T Consensus 124 ~IT~ 127 (201)
T 3fxa_A 124 GVTE 127 (201)
T ss_dssp EEES
T ss_pred EEEC
Confidence 9984
No 420
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=23.31 E-value=1.8e+02 Score=22.98 Aligned_cols=79 Identities=16% Similarity=0.230 Sum_probs=45.7
Q ss_pred CCceEEEEECCCchh----HHHHHHHHHcCCEEEE---EeCCccC----HHHHhccCCCEEEECCCCCCCCCcchHHHHH
Q 027062 23 NKNPIIVIDNYDSFT----YNLCQYMGELGYHFEV---YRNDELT----VEELKRKNPRGVLISPGPGAPQDSGISLQTV 91 (229)
Q Consensus 23 ~~~~ilvid~~~~~~----~~~~~~l~~~g~~~~v---~~~~~~~----~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i 91 (229)
...+|++|...+.+. ..+.+.+++.|.++.. +.....+ ...+...++|+|++.+.. .....+++.+
T Consensus 134 g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~~~dav~~~~~~---~~a~~~~~~~ 210 (362)
T 3snr_A 134 NVKTVGYIGYSDSYGDLWFNDLKKQGEAMGLKIVGEERFARPDTSVAGQALKLVAANPDAILVGASG---TAAALPQTTL 210 (362)
T ss_dssp TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCSCCHHHHHHHHHHCCSEEEEECCH---HHHHHHHHHH
T ss_pred CCCEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEeecCCCCCCHHHHHHHHHhcCCCEEEEecCc---chHHHHHHHH
Confidence 456888885433332 3467788889998642 2222112 223444578999886521 1122345666
Q ss_pred HHhCCCCcEEEEe
Q 027062 92 LELGPTVPLFGVC 104 (229)
Q Consensus 92 ~~~~~~~PvlGIC 104 (229)
++.+-..|++++.
T Consensus 211 ~~~g~~~p~i~~~ 223 (362)
T 3snr_A 211 RERGYNGLIYQTH 223 (362)
T ss_dssp HHTTCCSEEEECG
T ss_pred HHcCCCccEEecc
Confidence 6777678988764
No 421
>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*
Probab=23.22 E-value=1.8e+02 Score=22.71 Aligned_cols=57 Identities=11% Similarity=0.103 Sum_probs=36.4
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEeC----CccCHHHHhc----cCCCEEEECCCCCC
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN----DELTVEELKR----KNPRGVLISPGPGA 80 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~----~~~~~~~l~~----~~~dgiii~GG~~~ 80 (229)
.|+|+|....+..-..+++.|.+.|.++..+.. |-.+.+.+.. .++|.||-..|...
T Consensus 3 ~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~~~D~~d~~~~~~~~~~~~~d~vih~a~~~~ 67 (321)
T 1e6u_A 3 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAAKVG 67 (321)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTTCCTTCHHHHHHHHHHHCCSEEEECCCCCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCccCCccCHHHHHHHHHhcCCCEEEEcCeecC
Confidence 467888885333445688888888998776532 2122333322 26899999888654
No 422
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=23.18 E-value=2e+02 Score=23.25 Aligned_cols=56 Identities=5% Similarity=0.020 Sum_probs=32.9
Q ss_pred cCCCceEEEEECCCchhH-HHHHHHHHc-CCEEEEEeC-Cc--------cCHHHHhc--cCCCEEEECCC
Q 027062 21 KNNKNPIIVIDNYDSFTY-NLCQYMGEL-GYHFEVYRN-DE--------LTVEELKR--KNPRGVLISPG 77 (229)
Q Consensus 21 ~~~~~~ilvid~~~~~~~-~~~~~l~~~-g~~~~v~~~-~~--------~~~~~l~~--~~~dgiii~GG 77 (229)
+++++||.||..+ .... ...+.+... ++++.-+-. +. .+.+++.+ .++|+|+|+-.
T Consensus 22 ~M~~~rvgiiG~G-~ig~~~~~~~l~~~~~~~lvav~d~~~~~~g~~~~~~~~~ll~~~~~vD~V~i~tp 90 (330)
T 4ew6_A 22 SMSPINLAIVGVG-KIVRDQHLPSIAKNANFKLVATASRHGTVEGVNSYTTIEAMLDAEPSIDAVSLCMP 90 (330)
T ss_dssp CCCCEEEEEECCS-HHHHHTHHHHHHHCTTEEEEEEECSSCCCTTSEEESSHHHHHHHCTTCCEEEECSC
T ss_pred cCCCceEEEEecC-HHHHHHHHHHHHhCCCeEEEEEEeCChhhcCCCccCCHHHHHhCCCCCCEEEEeCC
Confidence 4456899999973 3333 466667664 666553321 10 23455543 36899998754
No 423
>2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel, glycosyltransferase, transferase; HET: NDG; 1.85A {Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A* 2zuw_A*
Probab=23.11 E-value=1.6e+02 Score=27.04 Aligned_cols=98 Identities=9% Similarity=0.113 Sum_probs=56.6
Q ss_pred CCCceEEEEECCCch-----------------hHH--HHHHHHHcCCEEEEEeCCccCHHH-HhccCCCEEEECCCCCCC
Q 027062 22 NNKNPIIVIDNYDSF-----------------TYN--LCQYMGELGYHFEVYRNDELTVEE-LKRKNPRGVLISPGPGAP 81 (229)
Q Consensus 22 ~~~~~ilvid~~~~~-----------------~~~--~~~~l~~~g~~~~v~~~~~~~~~~-l~~~~~dgiii~GG~~~~ 81 (229)
....+|+||++.+.. ... +.++|..++++++.++.++....+ ++ ++|.||..|-.++.
T Consensus 436 ~~~~kVAVLnsWGklRSW~~~~vaHak~~kq~ysy~GilEALsg~~~dV~FIsfdDI~e~e~L~--d~DVIIn~G~A~Ta 513 (759)
T 2zuv_A 436 EGELNVAILNSWGKMRSWMAFTVAHALPNKQTYSYYGILESLSGMRVNVRFISFDDVLAHGIDS--DIDVIINGGPVDTA 513 (759)
T ss_dssp CCCSEEEEEESSGGGGTTTTTCSSTTCCCTTTHHHHHHHHHHHTSSSEEEEEEHHHHHHHCCCT--TCCEEEEEECTTST
T ss_pred ccCceEEEEecCCCCcccccccccccccccccccHHHHHHHHhcCCCceEEecHHHhccccccc--cCCEEEecCcchhc
Confidence 345788999775221 111 778899999999999876433222 22 68999977744443
Q ss_pred CCcc------hHHHHHHHh-CCCCcEEEEeh-------h----HHHHHHHhCCeeeecC
Q 027062 82 QDSG------ISLQTVLEL-GPTVPLFGVCM-------G----LQCIGEAFGGKIVRSP 122 (229)
Q Consensus 82 ~~~~------~~~~~i~~~-~~~~PvlGIC~-------G----~Qlla~alGg~v~~~~ 122 (229)
.-.+ .....+++. .++-=++||.- | +| |+..||.......
T Consensus 514 lSgg~~W~~p~~~~aLR~fV~~GGgLIgVGepSsfqg~g~gryFq-LADVLGVd~e~g~ 571 (759)
T 2zuv_A 514 FTGGDVWTNPKLVETVRAWVRGGGAFVGVGEPSSAPRFQTGRFFQ-LADVIGVDEERYQ 571 (759)
T ss_dssp TTCGGGGGCHHHHHHHHHHHHTTCEEEEEESTTEEEEEETTEEET-THHHHSEEECCSS
T ss_pred ccCccccCCHHHHHHHHHHHHcCCcEEEeCCccccccccCccccc-HHhhcCcccccCC
Confidence 3222 234555552 22233333321 1 34 8888988776654
No 424
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=23.05 E-value=1.4e+02 Score=23.88 Aligned_cols=35 Identities=11% Similarity=0.028 Sum_probs=23.4
Q ss_pred CCCceEEEEECC---CchhH----HHHHHHHHcCCEEEEEeC
Q 027062 22 NNKNPIIVIDNY---DSFTY----NLCQYMGELGYHFEVYRN 56 (229)
Q Consensus 22 ~~~~~ilvid~~---~~~~~----~~~~~l~~~g~~~~v~~~ 56 (229)
...||||||... .++.. .+++.+++.|.+|+++..
T Consensus 20 m~~MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G~eV~v~DL 61 (280)
T 4gi5_A 20 FQSMKVLLIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVSDL 61 (280)
T ss_dssp --CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEET
T ss_pred hhCCeEEEEEeCCCCccHHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 456789999653 34443 356667888999998864
No 425
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=22.73 E-value=1.2e+02 Score=25.03 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=26.8
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEEEEeC
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN 56 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~ 56 (229)
..++|+||.. +.....+.++++++|+++.++..
T Consensus 13 ~~k~IlIlG~-G~~g~~la~aa~~~G~~vi~~d~ 45 (389)
T 3q2o_A 13 PGKTIGIIGG-GQLGRMMALAAKEMGYKIAVLDP 45 (389)
T ss_dssp TTSEEEEECC-SHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeC
Confidence 4568999985 45677899999999999988864
No 426
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=22.42 E-value=98 Score=25.93 Aligned_cols=33 Identities=15% Similarity=0.158 Sum_probs=26.7
Q ss_pred CCCceEEEEECCCchhHHHHHHHHHcCCEEEEEe
Q 027062 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYR 55 (229)
Q Consensus 22 ~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~ 55 (229)
+..++|+||.. +.....+.++++++|+++.++.
T Consensus 22 m~~~~I~ilGg-G~lg~~l~~aa~~lG~~v~~~d 54 (403)
T 3k5i_A 22 WNSRKVGVLGG-GQLGRMLVESANRLNIQVNVLD 54 (403)
T ss_dssp CSCCEEEEECC-SHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEE
Confidence 34578999985 4566788999999999998876
No 427
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=22.42 E-value=2.2e+02 Score=22.93 Aligned_cols=55 Identities=5% Similarity=0.036 Sum_probs=37.0
Q ss_pred CCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCC
Q 027062 22 NNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77 (229)
Q Consensus 22 ~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG 77 (229)
-...+++||......-..++..|...|+.+.+.+......++... +.|.||..=|
T Consensus 159 l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~~~-~ADIVI~Avg 213 (285)
T 3l07_A 159 TEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLKSHTT-KADILIVAVG 213 (285)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHHHT-TCSEEEECCC
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHHHhcc-cCCEEEECCC
Confidence 356789999864335677888899999999988754333443322 4577776544
No 428
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=22.40 E-value=1.1e+02 Score=22.12 Aligned_cols=78 Identities=14% Similarity=0.044 Sum_probs=41.0
Q ss_pred ceEEEEECCCchh--HHHHHHHHHcCCEEEEEeCCccCHHHHhcc-CCCEEEECCCCCCCCCcchHHHHHHH-hCCCCcE
Q 027062 25 NPIIVIDNYDSFT--YNLCQYMGELGYHFEVYRNDELTVEELKRK-NPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPL 100 (229)
Q Consensus 25 ~~ilvid~~~~~~--~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~-~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~Pv 100 (229)
.+|.++..+.+.. ..+...|...|..+..+...+.....+... .-|.+|+..-.|. ....++.+.. .+++.|+
T Consensus 50 ~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vI~iS~sG~---t~~~~~~~~~ak~~g~~v 126 (183)
T 2xhz_A 50 GKVVVMGMGASGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNSGE---SSEITALIPVLKRLHVPL 126 (183)
T ss_dssp SCEEEEECHHHHHHHHHHHHHHHTTTCCEEECCTTHHHHHTSTTCCTTCEEEEECSSSC---CHHHHHHHHHHHTTTCCE
T ss_pred CeEEEEeecHHHHHHHHHHHHHHhcCceEEEeCchHHhhhhhccCCCCCEEEEEeCCCC---CHHHHHHHHHHHHCCCCE
Confidence 4899999876643 345666777888877664321111111111 1255554433332 2233333332 3467899
Q ss_pred EEEeh
Q 027062 101 FGVCM 105 (229)
Q Consensus 101 lGIC~ 105 (229)
++|+-
T Consensus 127 i~IT~ 131 (183)
T 2xhz_A 127 ICITG 131 (183)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 99985
No 429
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=22.22 E-value=47 Score=25.71 Aligned_cols=33 Identities=12% Similarity=0.040 Sum_probs=26.9
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEEEEe
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYR 55 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~ 55 (229)
..++|+|++........+.++|+..|+++....
T Consensus 10 ~~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~~ 42 (254)
T 2ayx_A 10 SGKRCWLAVRNASLCQFLETSLQRSGIVVTTYE 42 (254)
T ss_dssp TTEEEEEECCCHHHHHHHHHHHTTTTEEEEECS
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEec
Confidence 457899999766677889999999999887654
No 430
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=22.22 E-value=3.1e+02 Score=22.04 Aligned_cols=82 Identities=11% Similarity=0.034 Sum_probs=47.8
Q ss_pred CCceEEEEECCCchh----HHHHHHHHHc--CCEEEEEeC---CccCH----HHHhccCCCEEEECCCCCCCCCcchHHH
Q 027062 23 NKNPIIVIDNYDSFT----YNLCQYMGEL--GYHFEVYRN---DELTV----EELKRKNPRGVLISPGPGAPQDSGISLQ 89 (229)
Q Consensus 23 ~~~~ilvid~~~~~~----~~~~~~l~~~--g~~~~v~~~---~~~~~----~~l~~~~~dgiii~GG~~~~~~~~~~~~ 89 (229)
...+|++|-..+.+. ..+.+.+++. |.++..... ...+. ..+...++|.|++.+... +...+++
T Consensus 141 g~~~vaii~~~~~~g~~~~~~~~~~l~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~v~~~~~~~---~~~~~~~ 217 (387)
T 3i45_A 141 PITRWATIAPNYEYGQSAVARFKELLLAARPEVTFVAEQWPALYKLDAGPTVQALQQAEPEGLFNVLFGA---DLPKFVR 217 (387)
T ss_dssp SCCEEEEECCSSHHHHHHHHHHHHHHHHHCTTCEEEEEECCCTTCCCHHHHHHHHHHTCCSEEEECCCTT---HHHHHHH
T ss_pred CCCeEEEEeCCchHhHHHHHHHHHHHHHhCCCcEEEeeecCCCCCcCHHHHHHHHHhCCCCEEEEcCccH---HHHHHHH
Confidence 457898886544443 3466667777 787654322 11222 234445789998876432 2233455
Q ss_pred HHHHhC--CCCcEEEEehhH
Q 027062 90 TVLELG--PTVPLFGVCMGL 107 (229)
Q Consensus 90 ~i~~~~--~~~PvlGIC~G~ 107 (229)
.+++.+ .+++++|.+.+.
T Consensus 218 ~~~~~g~~~~~~i~~~~~~~ 237 (387)
T 3i45_A 218 EGRVRGLFAGRQVVSMLTGE 237 (387)
T ss_dssp HHHHHTSSTTCEEEEEEEES
T ss_pred HHHHcCCCCCCeEEeecCCC
Confidence 555543 468999998763
No 431
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=22.15 E-value=1.2e+02 Score=23.10 Aligned_cols=40 Identities=10% Similarity=0.087 Sum_probs=22.7
Q ss_pred HHHHHHHHcCCEEEEEeCCcc------CHHHHhccCCCEEEECCCC
Q 027062 39 NLCQYMGELGYHFEVYRNDEL------TVEELKRKNPRGVLISPGP 78 (229)
Q Consensus 39 ~~~~~l~~~g~~~~v~~~~~~------~~~~l~~~~~dgiii~GG~ 78 (229)
.+.+.+++.|+++.+...... ..+.+...++||||+.+..
T Consensus 20 gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 65 (276)
T 2h0a_A 20 GIEGVLLEQRYDLALFPILSLARLKRYLENTTLAYLTDGLILASYD 65 (276)
T ss_dssp HHHHHHGGGTCEEEECCCCSCCCCC---------CCCSEEEEESCC
T ss_pred HHHHHHHHCCCEEEEEeCCCchhhHHHHHHHHHhCCCCEEEEecCC
Confidence 355667778999887653211 1122333479999998754
No 432
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=22.15 E-value=86 Score=24.55 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=33.7
Q ss_pred ceEEEEECCCchh-HHHHHHHHHcCCEEEEEeCCc----cCHHHHhc---cCCCEEEECCCC
Q 027062 25 NPIIVIDNYDSFT-YNLCQYMGELGYHFEVYRNDE----LTVEELKR---KNPRGVLISPGP 78 (229)
Q Consensus 25 ~~ilvid~~~~~~-~~~~~~l~~~g~~~~v~~~~~----~~~~~l~~---~~~dgiii~GG~ 78 (229)
|||||... .+|. ..+++.|.+.|.+|..+.-.. ...++++. .++|+++=.-|.
T Consensus 1 MkILVTGa-tGfIG~~L~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~l~~~d~vihla~~ 61 (298)
T 4b4o_A 1 MRVLVGGG-TGFIGTALTQLLNARGHEVTLVSRKPGPGRITWDELAASGLPSCDAAVNLAGE 61 (298)
T ss_dssp CEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSCCTTEEEHHHHHHHCCCSCSEEEECCCC
T ss_pred CEEEEECC-CCHHHHHHHHHHHHCCCEEEEEECCCCcCeeecchhhHhhccCCCEEEEeccC
Confidence 78888875 5666 458899999999998764221 11122221 167888865553
No 433
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=21.65 E-value=1.2e+02 Score=24.09 Aligned_cols=78 Identities=8% Similarity=0.104 Sum_probs=45.2
Q ss_pred CCceEEEEECCCchh----HHHHHHHHHcCCEEEE---EeCCccC----HHHHhccCCCEEEECCCCCCCCCcchHHHHH
Q 027062 23 NKNPIIVIDNYDSFT----YNLCQYMGELGYHFEV---YRNDELT----VEELKRKNPRGVLISPGPGAPQDSGISLQTV 91 (229)
Q Consensus 23 ~~~~ilvid~~~~~~----~~~~~~l~~~g~~~~v---~~~~~~~----~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i 91 (229)
...+|++|-..+.+. ..+.+.+++.|.++.. +.....+ ...+...++|+|++.+... +...+++.+
T Consensus 137 g~~~iaii~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~---~a~~~~~~~ 213 (356)
T 3ipc_A 137 KDAKVAIIHDKTPYGQGLADETKKAANAAGVTEVMYEGVNVGDKDFSALISKMKEAGVSIIYWGGLHT---EAGLIIRQA 213 (356)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHHHHTTCCCSEEEECCTTCCCCHHHHHHHHHTTCCEEEEESCHH---HHHHHHHHH
T ss_pred CCCEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEEccCch---HHHHHHHHH
Confidence 456788886533343 3466778888887632 2222111 2234445789999865321 122345666
Q ss_pred HHhCCCCcEEEE
Q 027062 92 LELGPTVPLFGV 103 (229)
Q Consensus 92 ~~~~~~~PvlGI 103 (229)
++.+-..|++|.
T Consensus 214 ~~~g~~~~~~~~ 225 (356)
T 3ipc_A 214 ADQGLKAKLVSG 225 (356)
T ss_dssp HHHTCCCEEEEC
T ss_pred HHCCCCCcEEEe
Confidence 677767899875
No 434
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=21.60 E-value=1.5e+02 Score=25.04 Aligned_cols=34 Identities=15% Similarity=0.251 Sum_probs=26.8
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCC
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND 57 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~ 57 (229)
..++|+||.. +.....+.++++++|+++.++..+
T Consensus 34 ~~~~IlIlG~-G~lg~~~~~aa~~lG~~v~v~d~~ 67 (419)
T 4e4t_A 34 PGAWLGMVGG-GQLGRMFCFAAQSMGYRVAVLDPD 67 (419)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEECCC
Confidence 4568999984 456678899999999999887643
No 435
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=21.55 E-value=2.4e+02 Score=23.10 Aligned_cols=79 Identities=14% Similarity=0.232 Sum_probs=43.5
Q ss_pred CCceEEEEECCCchhH----HHHHHHHHcCCEEEEEe-C--CccC----HHHHhccCCCEEEECCCCCCCCCcchHHHHH
Q 027062 23 NKNPIIVIDNYDSFTY----NLCQYMGELGYHFEVYR-N--DELT----VEELKRKNPRGVLISPGPGAPQDSGISLQTV 91 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~----~~~~~l~~~g~~~~v~~-~--~~~~----~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i 91 (229)
...+|+||...+.+.. .+.+.+++.|.++.... + ...+ ...+...++|.|++.+... .+...+++.+
T Consensus 163 ~~~~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i~~~~~d~v~~~~~~~--~~~~~~~~~~ 240 (419)
T 3h5l_A 163 PNNKIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIPVSDWGPTLAKLRADPPAVIVVTHFYP--QDQALFMNQF 240 (419)
T ss_dssp SSSEEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSSCSCCHHHHHHHHHSCCSEEEECCCCH--HHHHHHHHHH
T ss_pred CCCEEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCCCccHHHHHHHHHhcCCCEEEEccccC--chHHHHHHHH
Confidence 3468888876455543 35566677898886432 2 1111 2345555889999875211 1122334444
Q ss_pred HHhCCCCcEEEE
Q 027062 92 LELGPTVPLFGV 103 (229)
Q Consensus 92 ~~~~~~~PvlGI 103 (229)
++.+-+.+++|.
T Consensus 241 ~~~g~~~~~~~~ 252 (419)
T 3h5l_A 241 MTDPTNSLVYLQ 252 (419)
T ss_dssp TTSCCSCEEEEC
T ss_pred HHcCCCceEEec
Confidence 444445677765
No 436
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=21.51 E-value=1.2e+02 Score=21.38 Aligned_cols=48 Identities=13% Similarity=0.083 Sum_probs=28.2
Q ss_pred HhccCCCEEEECCCCCCCCCcchHHHHHH--HhCCCCcEEEEehhHHHHHHH
Q 027062 64 LKRKNPRGVLISPGPGAPQDSGISLQTVL--ELGPTVPLFGVCMGLQCIGEA 113 (229)
Q Consensus 64 l~~~~~dgiii~GG~~~~~~~~~~~~~i~--~~~~~~PvlGIC~G~Qlla~a 113 (229)
+...++|.||-+..+.. ....--..+| +...++|++=-=-+..++.++
T Consensus 92 i~~g~i~lVInt~~~~~--~~~~d~~~iRR~Av~~~IP~~T~~~tA~a~~~a 141 (143)
T 2yvq_A 92 IRDGSIDLVINLPNNNT--KFVHDNYVIRRTAVDSGIPLLTNFQVTKLFAEA 141 (143)
T ss_dssp HHTTSCCEEEECCCCCG--GGHHHHHHHHHHHHHTTCCEECSHHHHHHHHHT
T ss_pred HHCCCceEEEECCCCCC--cCCccHHHHHHHHHHhCCCeEcCHHHHHHHHHH
Confidence 44457899999886531 1111112233 245679998776666666654
No 437
>1suy_C CIIABD, circadian clock protein KAIC; X-class four helix bundle, protein-peptide complex, circadia protein; NMR {Thermosynechococcus elongatus} PDB: 1sv1_C
Probab=21.48 E-value=32 Score=17.50 Aligned_cols=12 Identities=17% Similarity=0.340 Sum_probs=9.0
Q ss_pred ccccccCccccc
Q 027062 2 AVAEAVPISKSL 13 (229)
Q Consensus 2 ~~~~~~~~~~~~ 13 (229)
|+++.+||+.+-
T Consensus 4 giisgtptrisv 15 (34)
T 1suy_C 4 GIISGTPTRISV 15 (34)
T ss_dssp CCCCCCSSCSCC
T ss_pred ccccCCCceEee
Confidence 678888887653
No 438
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=21.47 E-value=2.9e+02 Score=21.43 Aligned_cols=38 Identities=16% Similarity=0.268 Sum_probs=23.5
Q ss_pred HHHHHHHcCCEEEEEeCCccCH-------HHHhccCCCEEEECCC
Q 027062 40 LCQYMGELGYHFEVYRNDELTV-------EELKRKNPRGVLISPG 77 (229)
Q Consensus 40 ~~~~l~~~g~~~~v~~~~~~~~-------~~l~~~~~dgiii~GG 77 (229)
+.+++++.|+++.+......+. +.+...++||||+.+.
T Consensus 22 i~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (313)
T 2h3h_A 22 VKAAGKALGVDTKFFVPQKEDINAQLQMLESFIAEGVNGIAIAPS 66 (313)
T ss_dssp HHHHHHHHTCEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred HHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 5566777899998764221222 1223347999999764
No 439
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=21.43 E-value=46 Score=26.72 Aligned_cols=80 Identities=8% Similarity=0.030 Sum_probs=45.7
Q ss_pred CCceEEEEECCCchhHH----HHHHHHHcCCEEEEEe-CCccC----HHHHhccCCCEEEECCCCCCCCCcchHHHHHHH
Q 027062 23 NKNPIIVIDNYDSFTYN----LCQYMGELGYHFEVYR-NDELT----VEELKRKNPRGVLISPGPGAPQDSGISLQTVLE 93 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~----~~~~l~~~g~~~~v~~-~~~~~----~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~ 93 (229)
..++++||...+.|... +.+.+++.|.++.-.. +.... ...+...++|.|++.+.+. +...+.+.++.
T Consensus 123 g~k~~~ii~~~~~yg~~~~~~f~~~~~~~Gg~vv~~~~~~~~~~~~~~~~~~~~~~dai~~~~~~~---~~~~i~~q~~~ 199 (327)
T 3ckm_A 123 GVRNPLVAMPQNDLGQRVGNAFNVRWQQLAGTDANIRYYNLPADVTYFVQENNSNTTALYAVASPT---ELAEMKGYLTN 199 (327)
T ss_dssp TCCSCEEEEESSHHHHHHHHHHHHHHHHHHSSCCEEEEESSTTHHHHHHHHSCTTCCEEEECCCHH---HHHHHHHHHTT
T ss_pred CCeeEEEEecCChHHHHHHHHHHHHHHHCCCeEEEEEECCCCchhhHHHHHhccCCcEEEEEcCHH---HHHHHHHHHHh
Confidence 45667777655556544 5566667777654332 22111 1223344899999987431 22334455556
Q ss_pred hCCCCcEEEEeh
Q 027062 94 LGPTVPLFGVCM 105 (229)
Q Consensus 94 ~~~~~PvlGIC~ 105 (229)
.+.+.|++|.-.
T Consensus 200 ~g~~~~~~~~~~ 211 (327)
T 3ckm_A 200 IVPNLAIYASSR 211 (327)
T ss_dssp TCTTCEEEECGG
T ss_pred hhccCCEEeeec
Confidence 677789998753
No 440
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=21.42 E-value=1.1e+02 Score=22.30 Aligned_cols=31 Identities=10% Similarity=-0.040 Sum_probs=22.2
Q ss_pred ceEEEEECCCchhHHHHHHHHHcCCEEEEEe
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGELGYHFEVYR 55 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~ 55 (229)
|+|+|....+..-..+++.|.+.|.++..+.
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~ 31 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIV 31 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEE
Confidence 5788888543344568888888898887664
No 441
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=21.36 E-value=1.2e+02 Score=24.71 Aligned_cols=33 Identities=9% Similarity=0.171 Sum_probs=24.5
Q ss_pred CceEEEEECC------Cc---hhHHHHHHHHHcCCEEEEEeC
Q 027062 24 KNPIIVIDNY------DS---FTYNLCQYMGELGYHFEVYRN 56 (229)
Q Consensus 24 ~~~ilvid~~------~~---~~~~~~~~l~~~g~~~~v~~~ 56 (229)
+|||++|-.. ++ +...+.+.|.+.|.+|.++-.
T Consensus 2 ~MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~~G~~V~v~~~ 43 (439)
T 3fro_A 2 HMKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTP 43 (439)
T ss_dssp CCEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred ceEEEEEecccCCcccCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 6899998632 22 345688899999999998863
No 442
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}
Probab=21.21 E-value=77 Score=26.27 Aligned_cols=37 Identities=16% Similarity=0.323 Sum_probs=27.0
Q ss_pred ccCCCceEEEEECCCchhHHHHHHHHHcCCEEEEEeCC
Q 027062 20 SKNNKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRND 57 (229)
Q Consensus 20 ~~~~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~~ 57 (229)
|+...|+|.||.. +..-..+...|.+.|.++.++..+
T Consensus 25 m~~~~mkI~VIGa-G~mG~alA~~La~~G~~V~l~~r~ 61 (356)
T 3k96_A 25 MEPFKHPIAILGA-GSWGTALALVLARKGQKVRLWSYE 61 (356)
T ss_dssp --CCCSCEEEECC-SHHHHHHHHHHHTTTCCEEEECSC
T ss_pred ccccCCeEEEECc-cHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3345689999996 456667888888899998877654
No 443
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=21.14 E-value=1.5e+02 Score=23.23 Aligned_cols=52 Identities=15% Similarity=0.057 Sum_probs=32.9
Q ss_pred CCceEEEEECCCch--------hHHHHHHHHHcCCEEEEEeCCccCHHHHhcc-CCCEEEEC
Q 027062 23 NKNPIIVIDNYDSF--------TYNLCQYMGELGYHFEVYRNDELTVEELKRK-NPRGVLIS 75 (229)
Q Consensus 23 ~~~~ilvid~~~~~--------~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~-~~dgiii~ 75 (229)
.+|||+||--+.+- ...+.++|++.|+++..+..++.. ..+... ++|.++..
T Consensus 2 ~~m~v~vl~gg~s~e~~vs~~s~~~v~~al~~~g~~v~~i~~~~~~-~~~~~~~~~D~v~~~ 62 (307)
T 3r5x_A 2 NAMRIGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKM-DLIEKAKDIDFALLA 62 (307)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHHHHHHHSCTTTEEEEEEECSSGG-GHHHHTTTCSEEEEC
T ss_pred CCcEEEEEeCCCCcchHhHHHHHHHHHHHHHHCCCEEEEEcccCch-hHHHhccCCCEEEEe
Confidence 36789999754332 234677888899999988765221 122222 67887764
No 444
>3r6m_A YEAZ, resuscitation promoting factor; actin/HSP70 nucleotide-binding fold, bacterial resuscitation BUT non-culturable state, Y YJEE; 3.10A {Vibrio parahaemolyticus}
Probab=21.03 E-value=30 Score=26.72 Aligned_cols=43 Identities=26% Similarity=0.555 Sum_probs=26.1
Q ss_pred CCCEEEECCCCCCCCCc--chHHHHHHHhCCCCcEEEEehhHHHHH
Q 027062 68 NPRGVLISPGPGAPQDS--GISLQTVLELGPTVPLFGVCMGLQCIG 111 (229)
Q Consensus 68 ~~dgiii~GG~~~~~~~--~~~~~~i~~~~~~~PvlGIC~G~Qlla 111 (229)
+.|+|.++=|||+..-- +.....-..+..++|++||+- ++.++
T Consensus 56 dld~Iav~~GPGsfTglRig~~~AkgLa~~~~iPl~gVst-L~a~a 100 (213)
T 3r6m_A 56 DLDALAFGRGPGSFTGVRIGIGIAQGLAFGAELPMIGVST-LAAMA 100 (213)
T ss_dssp TCSEEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEEEH-HHHHH
T ss_pred HccEEEEecCCCchhhHHHHHHHHHHHHHHhCCCEEEEcC-HHHHH
Confidence 57999999999986311 111112223345799999984 33343
No 445
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=21.02 E-value=1.2e+02 Score=24.75 Aligned_cols=39 Identities=5% Similarity=0.042 Sum_probs=26.1
Q ss_pred cccCCCceEEEEECCCc---h-hHHHHHHHHHcCCEEEEEeCC
Q 027062 19 KSKNNKNPIIVIDNYDS---F-TYNLCQYMGELGYHFEVYRND 57 (229)
Q Consensus 19 ~~~~~~~~ilvid~~~~---~-~~~~~~~l~~~g~~~~v~~~~ 57 (229)
..+..+|||+++-.... . ...+.+.|++.|.++.++-..
T Consensus 15 ~~~~~~MrIl~~~~~~~Gh~~~~~~la~~L~~~GheV~v~~~~ 57 (412)
T 3otg_A 15 HIEGRHMRVLFASLGTHGHTYPLLPLATAARAAGHEVTFATGE 57 (412)
T ss_dssp ---CCSCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEECG
T ss_pred CcccceeEEEEEcCCCcccHHHHHHHHHHHHHCCCEEEEEccH
Confidence 34556789999875322 1 135788999999999988653
No 446
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}
Probab=21.00 E-value=1.9e+02 Score=22.80 Aligned_cols=32 Identities=6% Similarity=0.042 Sum_probs=22.9
Q ss_pred CceEEEEECCCchhHHHHHHHHHcCCEEEEEe
Q 027062 24 KNPIIVIDNYDSFTYNLCQYMGELGYHFEVYR 55 (229)
Q Consensus 24 ~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~ 55 (229)
+|+|+|....+..-..+++.|.+.|.++..+.
T Consensus 13 ~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~ 44 (342)
T 2x4g_A 13 HVKYAVLGATGLLGHHAARAIRAAGHDLVLIH 44 (342)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 46899888643344568888888899887653
No 447
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=20.97 E-value=3.3e+02 Score=23.64 Aligned_cols=59 Identities=15% Similarity=0.148 Sum_probs=35.1
Q ss_pred HHhccCCCEEEECCCCCCCCCc--------chH--HHHHHH-h-CCCCcEEE---EehhHHHH-HHHhCCeeeec
Q 027062 63 ELKRKNPRGVLISPGPGAPQDS--------GIS--LQTVLE-L-GPTVPLFG---VCMGLQCI-GEAFGGKIVRS 121 (229)
Q Consensus 63 ~l~~~~~dgiii~GG~~~~~~~--------~~~--~~~i~~-~-~~~~PvlG---IC~G~Qll-a~alGg~v~~~ 121 (229)
.+.+...|+|++.+|+++.... ..+ +..+.+ . ..++||++ |..+-++. +.++|+.....
T Consensus 288 ~l~~aGaD~I~Vg~g~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GAd~V~i 362 (496)
T 4fxs_A 288 ALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMV 362 (496)
T ss_dssp HHHHHTCSEEEECSSCCTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHhCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcCCCeEEe
Confidence 3444578999998888875322 111 222222 1 23699986 77776665 56777765443
No 448
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=20.96 E-value=1.9e+02 Score=19.15 Aligned_cols=51 Identities=14% Similarity=0.156 Sum_probs=27.1
Q ss_pred CceEEEEECCCc----h-hHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECC
Q 027062 24 KNPIIVIDNYDS----F-TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISP 76 (229)
Q Consensus 24 ~~~ilvid~~~~----~-~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~G 76 (229)
.|+|+++ +..+ . ...+.+.+++.|+++.+........++. ..++|.|+++.
T Consensus 4 ~mkIlvv-C~~G~~TSll~~kl~~~~~~~gi~~~i~~~~~~~~~~~-~~~~D~Ii~t~ 59 (109)
T 2l2q_A 4 SMNILLV-CGAGMSTSMLVQRIEKYAKSKNINATIEAIAETRLSEV-VDRFDVVLLAP 59 (109)
T ss_dssp CEEEEEE-SSSSCSSCHHHHHHHHHHHHHTCSEEEEEECSTTHHHH-TTTCSEEEECS
T ss_pred ceEEEEE-CCChHhHHHHHHHHHHHHHHCCCCeEEEEecHHHHHhh-cCCCCEEEECC
Confidence 3676555 2222 2 2456777888898766544332223322 12678776653
No 449
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=20.46 E-value=1.1e+02 Score=24.96 Aligned_cols=37 Identities=16% Similarity=0.152 Sum_probs=24.0
Q ss_pred ccCCCceEEEEECCCc--h--hHHHHHHHHHcCCEEEEEeC
Q 027062 20 SKNNKNPIIVIDNYDS--F--TYNLCQYMGELGYHFEVYRN 56 (229)
Q Consensus 20 ~~~~~~~ilvid~~~~--~--~~~~~~~l~~~g~~~~v~~~ 56 (229)
.+..+|||+++-.... . ...+++.|++.|.+|.++..
T Consensus 11 ~~~~~MrIl~~~~~~~gh~~~~~~La~~L~~~GheV~v~~~ 51 (398)
T 4fzr_A 11 PRGSHMRILVIAGCSEGFVMPLVPLSWALRAAGHEVLVAAS 51 (398)
T ss_dssp ----CCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCceEEEEEcCCCcchHHHHHHHHHHHHHCCCEEEEEcC
Confidence 4556789999865321 1 23588899999999988754
No 450
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=20.38 E-value=2.9e+02 Score=21.81 Aligned_cols=87 Identities=11% Similarity=0.195 Sum_probs=47.5
Q ss_pred Cce-EEEEECCCchhHHHHHHHH-HcCCEEEEE---eCCccC----HHHHhccCCCEEEECCCCCCCCCcchHHHHHHHh
Q 027062 24 KNP-IIVIDNYDSFTYNLCQYMG-ELGYHFEVY---RNDELT----VEELKRKNPRGVLISPGPGAPQDSGISLQTVLEL 94 (229)
Q Consensus 24 ~~~-ilvid~~~~~~~~~~~~l~-~~g~~~~v~---~~~~~~----~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i~~~ 94 (229)
+.+ +++.+..+.|...+.+.++ ..|.++... +....+ ...+...++|.|++.+.. .+...+++.+++.
T Consensus 143 ~~~~~~~~~~~~~yg~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i~~~~~d~v~~~~~~---~~~~~~~~~~~~~ 219 (353)
T 4gnr_A 143 AKKVVLYTDNASDYAKGIAKSFRESYKGEIVADETFVAGDTDFQAALTKMKGKDFDAIVVPGYY---NEAGKIVNQARGM 219 (353)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHCCSEEEEEEEECTTCCCCHHHHHHHHTSCCSEEECCSCH---HHHHHHHHHHHHT
T ss_pred CcEEEEEEcCchHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEEecCc---HHHHHHHHHHHHc
Confidence 344 4444654456666666654 467776532 222111 234555689999886532 1233456666677
Q ss_pred CCCCcEEEEe--hhHHHHHHH
Q 027062 95 GPTVPLFGVC--MGLQCIGEA 113 (229)
Q Consensus 95 ~~~~PvlGIC--~G~Qlla~a 113 (229)
+-..|++|.- .+-.++..+
T Consensus 220 g~~~~~~~~~~~~~~~~~~~~ 240 (353)
T 4gnr_A 220 GIDKPIVGGDGFNGEEFVQQA 240 (353)
T ss_dssp TCCSCEEECGGGCSHHHHHHH
T ss_pred CCCCcEEEecccccchhhhhh
Confidence 7678888753 333444443
No 451
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}
Probab=20.31 E-value=2.7e+02 Score=21.35 Aligned_cols=56 Identities=13% Similarity=0.051 Sum_probs=31.5
Q ss_pred ceEEEEECCCchhHHHHHHHHHc-CCEEEEEeC------------------CccCHHHHhcc--CCCEEEECCCCCC
Q 027062 25 NPIIVIDNYDSFTYNLCQYMGEL-GYHFEVYRN------------------DELTVEELKRK--NPRGVLISPGPGA 80 (229)
Q Consensus 25 ~~ilvid~~~~~~~~~~~~l~~~-g~~~~v~~~------------------~~~~~~~l~~~--~~dgiii~GG~~~ 80 (229)
|+|+|....+..-..+++.|.+. |.++..+.- |-.+.+.+... ++|.||...|...
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~~ 77 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSIIH 77 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCCCC
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCc
Confidence 56788775333345567777766 777665432 11122333321 5788888877543
No 452
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=20.28 E-value=2.5e+02 Score=22.81 Aligned_cols=53 Identities=8% Similarity=0.042 Sum_probs=33.1
Q ss_pred CCCceEEEEECCCc--h--hHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECC
Q 027062 22 NNKNPIIVIDNYDS--F--TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISP 76 (229)
Q Consensus 22 ~~~~~ilvid~~~~--~--~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~G 76 (229)
...|||+++-.... . ...+++.|++.|.+|.++.. ...+.+....+..+-+.+
T Consensus 18 ~~~MrIl~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~~--~~~~~~~~~G~~~~~~~~ 74 (398)
T 3oti_A 18 GRHMRVLFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAVA--EHADRAAAAGLEVVDVAP 74 (398)
T ss_dssp -CCCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEES--SCHHHHHTTTCEEEESST
T ss_pred hhcCEEEEEcCCCcchHhHHHHHHHHHHHCCCEEEEecc--chHHHHHhCCCeeEecCC
Confidence 34579999965311 1 24588899999999998876 233445544455555543
No 453
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=20.27 E-value=3.1e+02 Score=21.37 Aligned_cols=78 Identities=14% Similarity=0.171 Sum_probs=44.5
Q ss_pred CCceEEEEECCCchh----HHHHHHHHHcCCEEEEE-eC--CccC----HHHHhccCCCEEEECCCCCCCCCcchHHHHH
Q 027062 23 NKNPIIVIDNYDSFT----YNLCQYMGELGYHFEVY-RN--DELT----VEELKRKNPRGVLISPGPGAPQDSGISLQTV 91 (229)
Q Consensus 23 ~~~~ilvid~~~~~~----~~~~~~l~~~g~~~~v~-~~--~~~~----~~~l~~~~~dgiii~GG~~~~~~~~~~~~~i 91 (229)
...+|++|...+.+. ..+.+.+++.|.++... .. ...+ ...+...++|+|++.+.. .+...+++.+
T Consensus 137 g~~~i~~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~i~~~~~~---~~a~~~~~~~ 213 (346)
T 1usg_A 137 KPQRIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGITAGEKDFSALIARLKKENIDFVYYGGYY---PEMGQMLRQA 213 (346)
T ss_dssp CCSSEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEECCTTCCCCHHHHHHHHHTTCCEEEEESCH---HHHHHHHHHH
T ss_pred CCCeEEEEECCCchHHHHHHHHHHHHHHcCCEEEEEeccCCCCcCHHHHHHHHHhcCCCEEEEcCcc---hHHHHHHHHH
Confidence 456788886533343 23667778889877532 22 1111 223444478999887521 1112345666
Q ss_pred HHhCCCCcEEEE
Q 027062 92 LELGPTVPLFGV 103 (229)
Q Consensus 92 ~~~~~~~PvlGI 103 (229)
++.+-..|++|.
T Consensus 214 ~~~g~~~~~~~~ 225 (346)
T 1usg_A 214 RSVGLKTQFMGP 225 (346)
T ss_dssp HHTTCCCEEEEC
T ss_pred HHcCCCCeEEec
Confidence 666667898885
No 454
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=20.16 E-value=3.1e+02 Score=22.67 Aligned_cols=56 Identities=11% Similarity=0.128 Sum_probs=34.1
Q ss_pred ccCCCceEEEEECCCchh-----HHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECCC
Q 027062 20 SKNNKNPIIVIDNYDSFT-----YNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISPG 77 (229)
Q Consensus 20 ~~~~~~~ilvid~~~~~~-----~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~GG 77 (229)
....+|||+++- .++.. -.+.+.|++.|.+|.++-... ..+.+...++.-+-+.+.
T Consensus 16 ~~~~~mrIl~~~-~~~~GHv~p~l~la~~L~~~GheV~~~~~~~-~~~~v~~~G~~~~~i~~~ 76 (441)
T 2yjn_A 16 PRGSHMRVVFSS-MASKSHLFGLVPLAWAFRAAGHEVRVVASPA-LTEDITAAGLTAVPVGTD 76 (441)
T ss_dssp ---CCCEEEEEC-CSCHHHHTTTHHHHHHHHHTTCEEEEEECGG-GHHHHHTTTCCEEECSCC
T ss_pred ccCCccEEEEEc-CCCcchHhHHHHHHHHHHHCCCeEEEEeCch-hHHHHHhCCCceeecCCc
Confidence 344568999994 34322 358889999999999987542 223344445666655544
No 455
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=20.12 E-value=1.3e+02 Score=25.16 Aligned_cols=33 Identities=9% Similarity=0.179 Sum_probs=25.5
Q ss_pred CCceEEEEECCCchhHHHHHHHHHcCCEEEEEeC
Q 027062 23 NKNPIIVIDNYDSFTYNLCQYMGELGYHFEVYRN 56 (229)
Q Consensus 23 ~~~~ilvid~~~~~~~~~~~~l~~~g~~~~v~~~ 56 (229)
.+++|+|+.. +.....+.++++++|+++..+..
T Consensus 18 ~~~~ili~g~-g~~g~~~~~a~~~~G~~v~~v~~ 50 (433)
T 2dwc_A 18 SAQKILLLGS-GELGKEIAIEAQRLGVEVVAVDR 50 (433)
T ss_dssp TCCEEEEESC-SHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEC
Confidence 3568999975 34556788899999999987764
No 456
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=20.11 E-value=1.6e+02 Score=19.80 Aligned_cols=51 Identities=12% Similarity=0.037 Sum_probs=25.8
Q ss_pred CceEEEEECCCch------hHHHHHHHHHcCCEEEEEeCCccCHHHHhccCCCEEEECC
Q 027062 24 KNPIIVIDNYDSF------TYNLCQYMGELGYHFEVYRNDELTVEELKRKNPRGVLISP 76 (229)
Q Consensus 24 ~~~ilvid~~~~~------~~~~~~~l~~~g~~~~v~~~~~~~~~~l~~~~~dgiii~G 76 (229)
+++|+++= ..+. ...+.+.+.+.|+++.+........+.. ..++|.||.+.
T Consensus 21 ~kkIlvvC-~sG~gTS~ll~~kl~~~~~~~gi~~~V~~~~~~~~~~~-~~~~DlIist~ 77 (113)
T 1tvm_A 21 KRKIIVAC-GGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIETY-MDGVHLICTTA 77 (113)
T ss_dssp SEEEEEES-CSCSSHHHHHHHHHHHHHHHTTCCEEEEEECTTTTTTS-TTSCSEEEESS
T ss_pred ccEEEEEC-CCCHHHHHHHHHHHHHHHHHcCCeEEEEEecHHHHhhc-cCCCCEEEECC
Confidence 45676662 2232 2446677888898765444221111111 12578666554
No 457
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=20.06 E-value=17 Score=30.06 Aligned_cols=16 Identities=25% Similarity=0.480 Sum_probs=9.5
Q ss_pred hccCCCEEEECCCCCC
Q 027062 65 KRKNPRGVLISPGPGA 80 (229)
Q Consensus 65 ~~~~~dgiii~GG~~~ 80 (229)
++.++|++++-||.++
T Consensus 90 ~~~~Id~LvvIGGdgS 105 (319)
T 1zxx_A 90 KKHGIDAVVVIGGDGS 105 (319)
T ss_dssp HHTTCCEEEEEECHHH
T ss_pred HHhCCCEEEEECCchH
Confidence 3346677777776543
Done!