Query 027063
Match_columns 229
No_of_seqs 115 out of 1094
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 06:47:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027063.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027063hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o58_A L10A, 60S ribosomal pro 100.0 1.1E-58 3.9E-63 392.6 -12.2 216 1-216 1-217 (217)
2 3iz5_A 60S ribosomal protein L 100.0 1.6E-57 5.6E-62 385.2 -6.2 215 1-216 1-216 (216)
3 1i2a_A 50S ribosomal protein L 100.0 4.3E-52 1.5E-56 352.5 21.5 212 5-220 2-216 (219)
4 2zkr_5 60S ribosomal protein L 100.0 5.2E-52 1.8E-56 350.4 16.1 207 5-215 2-211 (212)
5 1mzp_A 50S ribosomal protein L 100.0 5.5E-51 1.9E-55 345.3 19.9 209 4-215 3-215 (217)
6 3j21_A 50S ribosomal protein L 100.0 3.6E-53 1.2E-57 358.4 6.5 211 3-216 2-215 (216)
7 2wwq_5 50S ribosomal protein L 100.0 1.3E-45 4.5E-50 315.0 20.3 199 14-220 24-229 (234)
8 3qoy_A 50S ribosomal protein L 100.0 3.4E-45 1.2E-49 313.3 19.4 201 9-220 23-233 (242)
9 3bbo_D Ribosomal protein L1; l 100.0 6.3E-45 2.1E-49 322.9 13.2 200 13-220 137-343 (352)
10 3u42_A 50S ribosomal protein L 100.0 1.3E-43 4.5E-48 301.6 19.6 193 12-214 22-224 (229)
11 2ftc_A Mitochondrial ribosomal 100.0 1.2E-38 4.2E-43 264.4 19.4 175 31-216 2-184 (189)
12 2ov7_A 50S ribosomal protein L 99.9 1.3E-21 4.5E-26 153.5 14.3 114 3-215 13-133 (137)
13 2wwq_5 50S ribosomal protein L 80.0 0.6 2.1E-05 39.1 1.4 23 117-139 124-147 (234)
14 3bbo_D Ribosomal protein L1; l 75.5 1.4 4.9E-05 39.0 2.6 22 117-138 238-260 (352)
15 2d00_A V-type ATP synthase sub 69.0 11 0.00038 27.4 5.8 73 62-139 3-78 (109)
16 3j21_A 50S ribosomal protein L 65.5 2.8 9.6E-05 34.5 2.1 21 117-137 117-139 (216)
17 3aon_B V-type sodium ATPase su 56.0 11 0.00037 27.8 3.7 91 63-160 3-107 (115)
18 2i4r_A V-type ATP synthase sub 52.2 31 0.0011 24.7 5.6 72 63-139 10-85 (102)
19 2kfe_A Meucin-24; alpha-helix, 51.8 19 0.00066 19.4 3.2 23 177-199 4-26 (26)
20 2qai_A V-type ATP synthase sub 49.1 34 0.0012 24.9 5.4 83 64-158 2-103 (111)
21 1mzp_A 50S ribosomal protein L 39.8 6.5 0.00022 32.3 0.2 19 117-135 120-140 (217)
22 1i2a_A 50S ribosomal protein L 39.7 6.2 0.00021 32.4 0.0 19 117-135 115-135 (219)
23 2zkr_5 60S ribosomal protein L 36.8 5.9 0.0002 32.4 -0.5 20 116-135 114-135 (212)
24 2ov6_A V-type ATP synthase sub 28.7 82 0.0028 22.2 4.6 70 64-138 2-75 (101)
25 1xi3_A Thiamine phosphate pyro 24.6 57 0.002 25.3 3.4 26 62-87 14-45 (215)
26 3lq0_A Proastacin; metallopept 21.5 2.8E+02 0.0096 22.6 7.2 58 164-229 48-105 (235)
No 1
>3o58_A L10A, 60S ribosomal protein L1; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3izc_A 1s1i_A 3izs_A 3o5h_A 2noq_G 3j0l_B 3j0o_B 3j0p_B 3j0q_B 3jyw_A
Probab=100.00 E-value=1.1e-58 Score=392.58 Aligned_cols=216 Identities=61% Similarity=0.961 Sum_probs=205.3
Q ss_pred CCcCCHHHHHHHHHHHHHHhhhhccCCCCccEEEEEEEcccCCCCCCcceeeEEcCCCCCCCcEEEEEeCcccHHHHHHc
Q 027063 1 MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKI 80 (229)
Q Consensus 1 ~~~~~~~~v~~av~~l~~~~k~~~~~~~~e~I~l~i~lk~~~~kk~~~~~~~I~LPh~~~~~~kIcvf~~~~~~~~a~~~ 80 (229)
||+++++++++||++++++.++.+.++|+|+|+|+|+||+++|++++++||.|.|||+++++.+||||++++.+++|+++
T Consensus 1 ~sk~~~~~~~~av~~~l~~~~~~~~~kf~etVel~i~Lk~idp~kd~~~rg~v~LPh~~~k~~~V~Vf~~~~~~~~Ak~a 80 (217)
T 3o58_A 1 MSKITSSQVREHVKELLKYSNETKKRNFLETVELQVGLKNYDPQRDKRFSGSLKLPNCPRPNMSICIFGDAFDVDRAKSC 80 (217)
T ss_dssp ---CCSTTHHHHTTSSSSCCSSSSCCSSCCCCCCCCCSCCSCSSSSSCCSCCCSCCCCCSSCCCCCCCSSTTSSGGGTTT
T ss_pred CCccCHHHHHHHHHHHHHhcccccccCCCccEEEEEEecccCCCCCCcCCeEEECCCCCCCCcEEEEEcCcHhHHHHHHc
Confidence 89999999999999999988655677999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeChHHHHHhhhCHHHHHHHhhcccEEEEehhhhhhhhhhhcCCCCCCCCCCccccCcccHHHHHHHhhccceeEec
Q 027063 81 GLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLK 160 (229)
Q Consensus 81 g~~vig~~~L~~~~~~~e~~rkL~~~yd~flad~~i~~~l~~~LG~~~~p~~K~p~~v~~~~~l~~~i~~~~~~~~~~~~ 160 (229)
||+++|+++|++.+++++++|+|+.+||+||||++||+.|||+|||+|||++|+|+|+..++|+.++|++++++++|+++
T Consensus 81 Ga~~vg~~~L~~~~k~~k~~~~l~~~fD~~iA~~~im~~l~riLG~~l~p~gk~P~p~~vt~dv~~~v~~~k~~v~~r~~ 160 (217)
T 3o58_A 81 GVDAMSVDDLKKLNKNKKLIKKLSKKYNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVSHNDDLYGKVTDVRSTIKFQLK 160 (217)
T ss_dssp TCCCCCSTTTTTTSCSSSHHHHHHCSSSCCCCCCCCSSCCSSSSSSTTHHHHCSSCCSCTTTCSSSGGGGTTSCCSCCCC
T ss_pred CCCEeCHHHHHHHhhchhHhhhhhhhCCEEEECHHHHHHHHHHhhhhhcccCCcCCCcCCchhHHHHHHHHhceEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999888778999999999999999999
Q ss_pred ccceEEEEEecCCCCHHHHHHHHHHHHHHHHHhccCCcccE-EEEeecCCCccccee
Q 027063 161 KVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNV-PLSEEYHGSFKPHLL 216 (229)
Q Consensus 161 ~~~~i~v~VG~~~m~~~ei~eNi~a~l~~l~~~~pkg~~nI-~l~~k~~~S~~~~~~ 216 (229)
+++|++++||+++|+++||+||+.++++++.+.+|+||.|| +++++++.|.++|||
T Consensus 161 k~~~i~v~IG~~~~~~e~l~eNi~avi~~l~~~~pk~~~~iksi~lksTmgp~i~iy 217 (217)
T 3o58_A 161 KVLCLAVAVGNVEMEEDVLVNQILMSVNFFVSLLKKNWQNVGSLVVKSSMGPAFRLY 217 (217)
T ss_dssp SSSCCCCCCCSSSCCSHHHHHHHHHTCSTTTCCSSSCSCCCSCCCCCSSSSCSCCC-
T ss_pred CCCEEEEeeccCCCCHHHHHHHHHHHHHHHHHhcccCCceEEEEEEECCCCCCEecC
Confidence 99999999999999999999999999999999999999999 999999999999997
No 2
>3iz5_A 60S ribosomal protein L1 (L1P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_A
Probab=100.00 E-value=1.6e-57 Score=385.24 Aligned_cols=215 Identities=82% Similarity=1.180 Sum_probs=206.6
Q ss_pred CCcCCHHHHHHHHHHHHHHhhhhccCCCCccEEEEEEEcccCCCCCCcceeeEEcCCCCCCCcEEEEEeCcccHHHHHHc
Q 027063 1 MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKI 80 (229)
Q Consensus 1 ~~~~~~~~v~~av~~l~~~~k~~~~~~~~e~I~l~i~lk~~~~kk~~~~~~~I~LPh~~~~~~kIcvf~~~~~~~~a~~~ 80 (229)
||+++++++++||++++++.++ +.++|+|||+|+|+|++++|++++++||.|.|||+++++.+||||++++++++|+++
T Consensus 1 ~~k~~~~~l~eav~~~~~~~~~-~~~kF~etvel~i~Lk~idp~kd~~~rg~v~LPh~~~k~~kV~Vf~~~~~~~~A~~a 79 (216)
T 3iz5_A 1 MSKLQSDAVKDAITQIVGEARE-KKRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMRVCMLGDAQHVDQAEKM 79 (216)
T ss_dssp CTGGGSCSSCEECTTTSSSSTT-HHHHCCCSSCCEEEEEEECCCCSSSTTCCEECCBCSSCCCCCCCEEEECCTHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhccc-cccCCCccEEEEEEecccCcccccccceeecCCCCCCCCcEEEEEcChHhHHHHHhc
Confidence 8999999999999998887743 356899999999999989999999999999999999999999999999999999999
Q ss_pred CCCeeChHHHHHhhhCHHHHHHHhhcccEEEEehhhhhhhhhhhcCCCCCCCCCCccccCcccHHHHHHHhhccceeEec
Q 027063 81 GLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLK 160 (229)
Q Consensus 81 g~~vig~~~L~~~~~~~e~~rkL~~~yd~flad~~i~~~l~~~LG~~~~p~~K~p~~v~~~~~l~~~i~~~~~~~~~~~~ 160 (229)
||+++|+++|++.+++++.+|+|+.+||+||||++||+.||++|||+|||++|+|++++.++|+.++|+++++++.|+++
T Consensus 80 Ga~~vg~~~L~~~~k~~~~~rkl~~~fD~~lA~~~i~~~l~riLG~~l~p~gk~P~p~~~t~dv~~~v~~~k~~v~~r~~ 159 (216)
T 3iz5_A 80 GLDYMDVESLKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLK 159 (216)
T ss_dssp HHTCSEEECGGGHHHHHHTCCCCSEEEECTTTHHHHHHHHHHHHTTTCSCCTTTTCBCSCHHHHHHHHHHTBCCEEECTT
T ss_pred cCCEeCHHHHHHHhhchHHHHHHHhhCCEEEECHHHHHHHHHHhcccccccCCcCCCcCCcccHHHHHHHHHhhhheeCC
Confidence 99999999999999999999999999999999999999999999999999999999988778999999999999999999
Q ss_pred ccceEEEEEecCCCCHHHHHHHHHHHHHHHHHhccCCcccE-EEEeecCCCccccee
Q 027063 161 KVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNV-PLSEEYHGSFKPHLL 216 (229)
Q Consensus 161 ~~~~i~v~VG~~~m~~~ei~eNi~a~l~~l~~~~pkg~~nI-~l~~k~~~S~~~~~~ 216 (229)
+++|++++||+++|+++||+||+.++++++.+.+|++|+|| +++++++-|.+.|||
T Consensus 160 k~~~i~v~IG~~~~~~e~L~eNi~avi~~l~~~~p~~~~~Iksv~iksTmgp~i~iy 216 (216)
T 3iz5_A 160 KVLCMGVAVGNLSMDEKQIQQNIQMSVNFLVSLLKKNWQNVRCLYVKSTMGKRVRVF 216 (216)
T ss_dssp SEEEEEEEETTSCHHHHHHHHHHHHHHHHHHCCSSCCSCSCSEEEECCSSCCCEEEC
T ss_pred CccEEEEecCCCCCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEECCCCCCEecC
Confidence 99999999999999999999999999999999999999999 999999999999997
No 3
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein, translation repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB: 1cjs_A 1u63_A 1dwu_A
Probab=100.00 E-value=4.3e-52 Score=352.50 Aligned_cols=212 Identities=26% Similarity=0.373 Sum_probs=197.0
Q ss_pred CHHHHHHHHHHHHHHhhhhccCCCCccEEEEEEEcccCCCCC-CcceeeEEcCCCCCCCcEEEEEeCcccHHHHHHcCCC
Q 027063 5 QSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKD-KRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLD 83 (229)
Q Consensus 5 ~~~~v~~av~~l~~~~k~~~~~~~~e~I~l~i~lk~~~~kk~-~~~~~~I~LPh~~~~~~kIcvf~~~~~~~~a~~~g~~ 83 (229)
++|++++||++|+++. +.++|+|+|+|+|+||+++|+++ +++||.|.|||+++++.+||||++++++++|+++||+
T Consensus 2 ~~~~l~eAv~~llk~~---~~~kf~etVel~i~LK~~dp~~d~q~vrg~v~LPh~~~k~~~V~Vf~~~~~~~~A~~aGa~ 78 (219)
T 1i2a_A 2 DREALLQAVKEARELA---KPRNFTQSFEFIATLKEIDMRKPENRIKTEVVLPHGRGKEAKIAVIGTGDLAKQAEELGLT 78 (219)
T ss_dssp CHHHHHHHHHHHHHHS---CCCSSCCEEEEEEEESSCCTTSGGGCCEEEEECTTCCSSCCCEEEECCHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHHhc---ccCCCCceEEEEEEecccCCcccccccceEEecCCCCCCCcEEEEEcCchhHHHHHHCCCC
Confidence 3899999999988775 56789999999999999999987 7999999999999999999999999889999999999
Q ss_pred eeChHHHHHhhh-CHHHHHHHhhcccEEEEehhhhhhhhhhhcCCCCCCCCCCccccCcccHHHHHHHhhccceeEeccc
Q 027063 84 YMDVEGLKKLNK-NKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKV 162 (229)
Q Consensus 84 vig~~~L~~~~~-~~e~~rkL~~~yd~flad~~i~~~l~~~LG~~~~p~~K~p~~v~~~~~l~~~i~~~~~~~~~~~~~~ 162 (229)
++|+++| ++++ +++.+|+++.+||+||||++|||.|+++||+.|+|++++|.|...++|+.++|+++++++.|+++++
T Consensus 79 ~vg~~~L-~ki~~~kk~~r~l~~~fD~~lA~~~~m~~l~k~LGk~LgprgkmP~pk~gt~dv~~~v~~~k~~v~~r~~k~ 157 (219)
T 1i2a_A 79 VIRKEEI-EELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMGVILGPRGKMPKPVPANANIKPLVERLKKTVVINTRDK 157 (219)
T ss_dssp EECHHHH-HHHHHCHHHHHHHHHHCSEEEEEGGGHHHHHHHTHHHHGGGTCCCEEECTTCCCHHHHHHHHTEEEEECTTS
T ss_pred EEcHHHH-HHHHhhhhhhhhchhhCCEEEECHHHHHHHHHHHhhhhcccCCCCcccCCCccHHHHHHHHhcceEEEecCC
Confidence 9999999 7665 6778899999999999999999999999999999999999998877899999999999999999999
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHHHHHHHHhccCCcccE-EEEeecCCCcccceecccc
Q 027063 163 LCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNV-PLSEEYHGSFKPHLLRNSA 220 (229)
Q Consensus 163 ~~i~v~VG~~~m~~~ei~eNi~a~l~~l~~~~pkg~~nI-~l~~k~~~S~~~~~~~~~~ 220 (229)
+|++++||+++|+++||+||+.+++++|.+.+|++|+|| +++++++.|.++|||++-+
T Consensus 158 ~~i~v~VG~~~~~~e~L~eNi~a~i~~l~~~~p~~~~~ik~v~lksTmgp~i~iy~~~~ 216 (219)
T 1i2a_A 158 PYFQVLVGNEKMTDEQIVDNIEAVLNVVAKKYEKGLYHIKDAYVKLTMGPAVKVKKEKA 216 (219)
T ss_dssp SEEEEEEEETTSCHHHHHHHHHHHHHHHHHHSTTGGGGEEEEEEEETTSCCEECC----
T ss_pred CEEEEEEecCCCCHHHHHHHHHHHHHHHHHhCCccccceEEEEEECCCCCCEEeEhhhh
Confidence 999999999999999999999999999999999999999 9999999999999998743
No 4
>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=5.2e-52 Score=350.40 Aligned_cols=207 Identities=22% Similarity=0.326 Sum_probs=194.5
Q ss_pred CHHHHHHHHHHHHHHhhhhccCCCCccEEEEEEEcccCCCC-CCcceeeEEcCCCCCCCcEEEEEeCcccHHHHHHcCCC
Q 027063 5 QSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLD 83 (229)
Q Consensus 5 ~~~~v~~av~~l~~~~k~~~~~~~~e~I~l~i~lk~~~~kk-~~~~~~~I~LPh~~~~~~kIcvf~~~~~~~~a~~~g~~ 83 (229)
+++++++||++|+++. +.++|+|+|+|+|+||+++|++ ++++||.|.|||+++++.+||||++++++++|+++||+
T Consensus 2 ~~~~l~eAv~~llk~~---~~~kf~etvel~i~Lk~~dp~k~d~~~rg~v~LPh~~~k~~~V~Vf~~~~~~~~A~~aGa~ 78 (212)
T 2zkr_5 2 ADQEIENAVSRALEDA---PERNFRETVDLAVNLRDLDLNDPSNRVDESVVLPAGTGQETTIVVFAEGETALRAEEVADD 78 (212)
T ss_dssp CCTTHHHHHHHHHHTS---CCCSSCCEEEEEEEESSCCTTTTTTCCCCEEECSSCCSSCCCEEEECCHHHHHHHHHHTSC
T ss_pred CHHHHHHHHHHHHHhc---ccCCCCceEEEEEEeCCCCCCcccccCceEEECCCCCCCCcEEEEEcCchhHHHHHhcCCC
Confidence 6788999999987775 5679999999999999999986 99999999999999999999999999889999999999
Q ss_pred eeChHHHHHhhh-CHHHHHHHhhcccEEEEehhhhhhhhhhhcCCCCCCCCCCccccCcccHHHHHHHhhccceeEeccc
Q 027063 84 YMDVEGLKKLNK-NKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKV 162 (229)
Q Consensus 84 vig~~~L~~~~~-~~e~~rkL~~~yd~flad~~i~~~l~~~LG~~~~p~~K~p~~v~~~~~l~~~i~~~~~~~~~~~~~~ 162 (229)
++|+++| ++++ +++.+|+++.+||+||||++||+.|+++||+.|+|++|+|.|...++|+.++|++++++++|+++++
T Consensus 79 ~vg~~~L-~ki~~~kk~~k~~~~~fD~~lA~~~~m~~l~~~LGk~LgprgkmP~pk~gt~dv~~~i~~~k~~v~~r~~k~ 157 (212)
T 2zkr_5 79 VLDEDEL-EELGGDDDAAKDLADDTDFFIAEKGLMQDIGRYLGTVLGPRGKMPEPLDPDDDVVEVIERMKNTVQLRSGER 157 (212)
T ss_dssp CCCHHHH-HHHTTCHHHHHHHHHHCSEEEECTTTHHHHHHHTHHHHHHHTCCEEECCSSSCCHHHHHHHHTEEECCCSSS
T ss_pred EeCHHHH-HHHHhhHHhhhcccccCCEEEECHHHHHHHHHHHhhhccccCCcCcccCCCcCHHHHHHHHHcceEEEecCC
Confidence 9999999 7776 7999999999999999999999999999999999999999988777899999999999999999999
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHHHHHHHHhccCCcccE-EEEeecCCCcccce
Q 027063 163 LCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNV-PLSEEYHGSFKPHL 215 (229)
Q Consensus 163 ~~i~v~VG~~~m~~~ei~eNi~a~l~~l~~~~pkg~~nI-~l~~k~~~S~~~~~ 215 (229)
+|++++||+++|+++||+||+.+++++|.+.+|++|+|| +++++++.|.+.+|
T Consensus 158 ~~i~v~VG~~~~~~e~L~eNi~a~i~~l~~~~p~~~~~ik~v~lksTmgp~i~i 211 (212)
T 2zkr_5 158 RTFHTRVGAEDMSAENIADNIDVILRRLHADLEKGPLNIDTVYVKTTMGPAMEV 211 (212)
T ss_dssp SEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCCCTTTEEEEEEEESSSCCEEC
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCccccccEEEEEEECCCCCCEEC
Confidence 999999999999999999999999999999999999999 99999999888765
No 5
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5 1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z
Probab=100.00 E-value=5.5e-51 Score=345.29 Aligned_cols=209 Identities=24% Similarity=0.327 Sum_probs=195.9
Q ss_pred CCHHHHHHHHHHHHHHhhhhccCCCCccEEEEEEEcccCCCCC-CcceeeEEcCCCCCCCcEEEEEeCcccHHHHHHcCC
Q 027063 4 LQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKD-KRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGL 82 (229)
Q Consensus 4 ~~~~~v~~av~~l~~~~k~~~~~~~~e~I~l~i~lk~~~~kk~-~~~~~~I~LPh~~~~~~kIcvf~~~~~~~~a~~~g~ 82 (229)
++++++++||++|+++. ..+.++|+|+|+++|+||+++|+++ +++||.|.|||+++++.+||||++++++++|+++||
T Consensus 3 v~~~~l~~Av~~ll~~~-~~~~~kf~etvel~i~LK~~dp~~d~q~~rg~v~LPh~~~k~~~V~Vf~~~~~~~~A~~aGa 81 (217)
T 1mzp_A 3 ADKESLIEALKLALSTE-YNVKRNFTQSVEIILTFKGIDMKKGDLKLREIVPLPKQPSKAKRVLVVPSSEQLEYAKKASP 81 (217)
T ss_dssp CCHHHHHHHHHHHHSTT-TCCCCSSCCEEEEEEEESSCCGGGTTTCCEEEEECSSCCSSCCCEEEECCHHHHHHHHHTCC
T ss_pred cCHHHHHHHHHHHHhhc-cccccCCCccEEEEEEecCCCCcccccccceeecCCCCCCCCcEEEEEcCchhHHHHHhcCC
Confidence 68999999999999984 3356799999999999999999988 799999999999999999999999988999999999
Q ss_pred C-eeChHHHHHhhh-CHHHHHHHhhcccEEEEehhhhhhhhhhhcCCCCCCCCCCccccCcccHHHHHHHhhccceeEec
Q 027063 83 D-YMDVEGLKKLNK-NKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLK 160 (229)
Q Consensus 83 ~-vig~~~L~~~~~-~~e~~rkL~~~yd~flad~~i~~~l~~~LG~~~~p~~K~p~~v~~~~~l~~~i~~~~~~~~~~~~ 160 (229)
+ ++|.++| ++++ +++.+|+++.+||+||||++|||.|+++||+.|+|++|+|.|...++|+.++|++++++++|+++
T Consensus 82 d~~vg~~~L-~ki~~~kk~~k~~~~~fD~~lA~~~~m~~l~~~LG~~LgprgkmP~p~~gt~dv~~~v~~~k~~v~~r~~ 160 (217)
T 1mzp_A 82 KVVITREEL-QKLQGQKRPVKKLARQNEWFLINQESMALAGRILGPALGPRGKFPTPLPNTADISEYINRFKRSVLVKTK 160 (217)
T ss_dssp SEECCHHHH-HHHTTCHHHHHHHHHSCSEEEECGGGHHHHHHHTHHHHGGGTCCEEECCSSSCCHHHHHHHHTEEEEECS
T ss_pred CeeeCHHHH-HHHHhhHHhhhhchhhCCEEEECHHHHHHHHHHHhhhccccCCCCcccCCCccHHHHHHHHhcceEEEec
Confidence 8 9999999 6665 68889999999999999999999999999999999999999987778999999999999999999
Q ss_pred ccceEEEEEecCCCCHHHHHHHHHHHHHHHHHhccCCcccE-EEEeecCCCcccce
Q 027063 161 KVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNV-PLSEEYHGSFKPHL 215 (229)
Q Consensus 161 ~~~~i~v~VG~~~m~~~ei~eNi~a~l~~l~~~~pkg~~nI-~l~~k~~~S~~~~~ 215 (229)
+++|++++||+++|+++||+||+.+++++|.+.+|+ |+|| +++++++.|.+.++
T Consensus 161 k~~~i~v~VG~~~~~~e~L~eNi~a~i~~l~~~~p~-~~~ik~v~lksTmgp~i~i 215 (217)
T 1mzp_A 161 DQPQVQVFIGTEDMKPEDLAENAIAVLNAIENKAKV-ETNLRNIYVKTTMGKAVKV 215 (217)
T ss_dssp SSSEEEEEEEETTSCHHHHHHHHHHHHHHHHHHCCC-TTTEEEEEEEETTSCCEEC
T ss_pred CCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCcc-chheEEEEEECCCCCCeeC
Confidence 999999999999999999999999999999999999 9999 99999999988775
No 6
>3j21_A 50S ribosomal protein L1P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=3.6e-53 Score=358.44 Aligned_cols=211 Identities=27% Similarity=0.430 Sum_probs=196.9
Q ss_pred cCCHHHHHHHHHHHHHHhhhhccCCCCccEEEEEEEcccCCCC-CCcceeeEEcCCCCCCCcEEEEEeCcccHHHHHHcC
Q 027063 3 KLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIG 81 (229)
Q Consensus 3 ~~~~~~v~~av~~l~~~~k~~~~~~~~e~I~l~i~lk~~~~kk-~~~~~~~I~LPh~~~~~~kIcvf~~~~~~~~a~~~g 81 (229)
++++|++.+||+.+++.. +.++|+|||+|+|+|+++||++ ++++||.|.|||+++++.+||||++++++++|+++|
T Consensus 2 ~~~~~~~~eav~~~~~~~---~~~kF~etvel~i~L~~~dp~k~d~~~rg~v~LPh~~~k~~kV~Vf~~~~~~~~Ak~aG 78 (216)
T 3j21_A 2 PFDRQKIVKAVKEAKARA---KPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADGAVAEAARKLG 78 (216)
T ss_dssp CSSCSSCCCCTTTTCCCC---CCSSSCCEEEEEEEESSCCSSSGGGSCCEEEECSSCCSSCCCEEECCCSHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhC---cccCCCceEEEEEEECCCCCCCcCceeeEEEeCCCCCCCCcEEEEECCHHHHHHHHhcC
Confidence 468888888887766533 2479999999999998899998 999999999999999999999999999999999999
Q ss_pred CCeeChHHHHHhhhCHHHHHHHhhcccEEEEehhhhhhhhhhhcCCCCCCCCCCccccCc-ccHHHHHHHhhccceeEec
Q 027063 82 LDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQ-ESLESKVNETKATVKFQLK 160 (229)
Q Consensus 82 ~~vig~~~L~~~~~~~e~~rkL~~~yd~flad~~i~~~l~~~LG~~~~p~~K~p~~v~~~-~~l~~~i~~~~~~~~~~~~ 160 (229)
|+++|.++|.+.+++++.+|+++.+||+||||++||+.||++||+.|+|++|+|.+...+ +|+.++|+++++++.|+++
T Consensus 79 ad~vg~e~L~k~~k~~k~~kkl~~~fD~~lA~~~im~~l~k~LGk~LgprgkmP~pk~gtv~dv~~~v~~~k~~v~~r~~ 158 (216)
T 3j21_A 79 LDVISSAELEEIASSPRQARKLAKKYDFFIAEAPLMPKIGRYLGRYLGPRNKMPVVVPPTLTDLTPIVEKLKKTVRIQLK 158 (216)
T ss_dssp CCCCCTTHHHHHHHCCCSSSCCSSSCSEEEBCGGGHHHHHHHHHHHHTTSSSSCCTTTTCBCSHHHHHHHHTCEEEEEEE
T ss_pred CCccCHHHHHHHhcCHHHHhhhhhhCCEEEeCHHHHHHHHHHHHHHhccCCccCCCcCCcHHHHHHHHHHHHhhceeecC
Confidence 999999999888899988899999999999999999999999999888898998888766 8999999999999999999
Q ss_pred ccceEEEEEecCCCCHHHHHHHHHHHHHHHHHhccCCcccE-EEEeecCCCccccee
Q 027063 161 KVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNV-PLSEEYHGSFKPHLL 216 (229)
Q Consensus 161 ~~~~i~v~VG~~~m~~~ei~eNi~a~l~~l~~~~pkg~~nI-~l~~k~~~S~~~~~~ 216 (229)
+++|++++||+++|+++||+|||.+++++|.+.+|+||+|| +++++++-|.+.+||
T Consensus 159 k~~~i~v~VG~~~~~~e~L~eNi~a~i~~l~~~~p~~~k~Iksi~lksTmgp~i~i~ 215 (216)
T 3j21_A 159 NNPVVHAPVGTEKMSDEEIAENIEAVLNAIIGKLERGESQVKSVYVKTTMGPAVKIE 215 (216)
T ss_dssp TTTEEECCCEESSSCHHHHHHHHHHHHHHHHHSCCCSSCSEEEEEEEESSSCCEECC
T ss_pred CCCEEEEEecCCCCCHHHHHHHHHHHHHHHHHhccccccceEEEEEECCCCCCEEcc
Confidence 99999999999999999999999999999999999999999 999999999999887
No 7
>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein, nucleotide-binding, protein biosynthesis, translation, zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB: 3fik_5 3izt_C* 3izu_C* 3j01_5 3j0t_C* 3j0w_C* 3j0y_C* 3j11_C* 3j12_C* 3j14_C* 3kcr_5 2rdo_9 2gya_2 2gyc_2
Probab=100.00 E-value=1.3e-45 Score=315.03 Aligned_cols=199 Identities=18% Similarity=0.289 Sum_probs=173.8
Q ss_pred HHHHHHhhhhccCCCCccEEEEEEEcccCCCC-CCcceeeEEcCCCCCCCcEEEEEeCcccHHHHHHcCCCeeChHHHHH
Q 027063 14 SSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKK 92 (229)
Q Consensus 14 ~~l~~~~k~~~~~~~~e~I~l~i~lk~~~~kk-~~~~~~~I~LPh~~~~~~kIcvf~~~~~~~~a~~~g~~vig~~~L~~ 92 (229)
.++++.+++.+..+|+|+|+++|+| +++|++ ++++||.|.|||+++++.+||||++++++++|+++||+++|++||++
T Consensus 24 ~eAv~~lk~~~~~kF~etvel~i~L-~vdp~k~dq~vrg~V~LPh~~~k~~rV~Vfa~~~~~~~Ak~aGad~vg~edLi~ 102 (234)
T 2wwq_5 24 NEAIALLKELATAKFVESVDVAVNL-GIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGANAEAAKAAGAELVGMEDLAD 102 (234)
T ss_dssp HHHHHHHHHTCCCSSCCEEEEEEEE-CSCCCSSTTSCCEEEECSSCCSSCCCEEEECSSSCHHHHHHHTCSEECSHHHHH
T ss_pred HHHHHHHHHhccCCCCceEEEEEEE-CCCCcccCcccceEEeCCCCCCCCcEEEEEcCchhHHHHHHcCCCEEcHHHHHH
Confidence 3444455566778999999999999 899986 89999999999999999999999999889999999999999999998
Q ss_pred hhhCHHHHHHHhhcccEEEEehhhhhhhhhhhcCCCCCCCCCCccccC--cccHHHHHHHhhcc-ceeEecccceEEEEE
Q 027063 93 LNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTH--QESLESKVNETKAT-VKFQLKKVLCMGVAV 169 (229)
Q Consensus 93 ~~~~~e~~rkL~~~yd~flad~~i~~~l~~~LG~~~~p~~K~p~~v~~--~~~l~~~i~~~~~~-~~~~~~~~~~i~v~V 169 (229)
+++.+. .+||+||||+++||.|++ ||+.|+|++++|.|... +.|+.++|++++++ +.|++++++|++++|
T Consensus 103 kik~~~------~~fD~~iAtp~~m~~l~~-LGkiLgprGlmP~pk~gTvt~dv~~~V~~~k~g~v~~r~~k~~~i~v~V 175 (234)
T 2wwq_5 103 QIKKGE------MNFDVVIASPDAMRVVGQ-LGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTI 175 (234)
T ss_dssp HHHHTC------CCSSEEEECHHHHHHTTS-SCSCCCSSCCSCCTTTTCBCSCSHHHHHHHHHHEEEECCSSSCEEEEEE
T ss_pred HHHcCc------ccCCEEEECHHHHHHHHH-HhhhhccCCCCCCccCCCccccHHHHHHHHHcCeeEEEecCCcEEEEEE
Confidence 887664 489999999999998777 66666666665555543 37999999999986 799999999999999
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHHhccCCcc--cE-EEEeecCCCcccceecccc
Q 027063 170 GNLSMEEKQIFQNVQMSVNFLVSLLKKNWQ--NV-PLSEEYHGSFKPHLLRNSA 220 (229)
Q Consensus 170 G~~~m~~~ei~eNi~a~l~~l~~~~pkg~~--nI-~l~~k~~~S~~~~~~~~~~ 220 (229)
|+++|+++||+||+.+++++|.+.+|++|+ || +++++++-|.+.+|-.+++
T Consensus 176 G~~~f~~e~L~eNi~a~i~~l~~~~p~~~kg~~Ik~v~lksTmgp~i~id~~~~ 229 (234)
T 2wwq_5 176 GKVDFDADKLKENLEALLVALKKAKPTQAKGVYIKKVSISTTMGAGVAVDQAGL 229 (234)
T ss_dssp EETTSCHHHHHHHHHHHHHHHHHSCCSSCCSCCEEEEEEEESSSCEEEESSSCC
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhCcccccCCeEEEEEEECCCCCCEEEehHHh
Confidence 999999999999999999999999999994 99 9999999998888755443
No 8
>3qoy_A 50S ribosomal protein L1; beta-alpha-beta, structural constituent of ribosome, rRNA BI regulation of translation, translation, ribosomal RNA; 2.10A {Aquifex aeolicus}
Probab=100.00 E-value=3.4e-45 Score=313.32 Aligned_cols=201 Identities=27% Similarity=0.413 Sum_probs=177.8
Q ss_pred HHHHHHHHHHHhhhhccCCCCccEEEEEEEcccCCCC-CCcceeeEEcCCCCCCCcEEEEEeCcccHHHHHHcCCCeeCh
Q 027063 9 LREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDV 87 (229)
Q Consensus 9 v~~av~~l~~~~k~~~~~~~~e~I~l~i~lk~~~~kk-~~~~~~~I~LPh~~~~~~kIcvf~~~~~~~~a~~~g~~vig~ 87 (229)
+++||+.+.+..+. ..++|+|||+++|+| +++|++ ++++||.|.|||+++++.+||||++++++++|+++||+++|+
T Consensus 23 l~eAi~~~k~~~~~-~~rkF~etVel~i~L-~vDp~k~d~~vrg~V~LPh~~gk~~kV~Vfa~~~~~~eAk~aGad~vg~ 100 (242)
T 3qoy_A 23 LEEAVDLLKKMEEV-LQRRFDETVELAMRL-NVDPRYADQMVRGSVVLPHGLGKPIKVVVFAEGEYAKKAEEAGADYVGG 100 (242)
T ss_dssp HHHHHHHHHHHHHH-HCCSSCCEEEEEEEE-SCCTTSGGGCCEEEEECSCCCSSCCCEEEECCHHHHHHHHHTTCSEEES
T ss_pred HHHHHHHHHhhccc-ccCCCCCcEEEEEEe-ccCCCCCCCccceEecCCCCCCCCcEEEEEcCHHHHHHHHHcCCCEECc
Confidence 45666665555433 246999999999999 799998 899999999999999999999999999999999999999999
Q ss_pred HHHHHhh-hCHHHHHHHhhcccEEEEehhhhhhhh---hhhcC-CCCCCCCCCccccCcccHHHHHHHhhc-cceeEecc
Q 027063 88 EGLKKLN-KNKKLVKKLAKKYHAFLASESVIKQIP---RLLGP-GLNKAGKFPTLVTHQESLESKVNETKA-TVKFQLKK 161 (229)
Q Consensus 88 ~~L~~~~-~~~e~~rkL~~~yd~flad~~i~~~l~---~~LG~-~~~p~~K~p~~v~~~~~l~~~i~~~~~-~~~~~~~~ 161 (229)
+||++++ +.+. .+||+|||++++||.++ |+||| ++||+.|.||++ +|+.++|+++++ ++.|++++
T Consensus 101 ~dLi~ki~k~g~------~~fD~~iAtpd~m~~l~~LGriLGPrGlmP~pk~gTvt---~dv~~~V~~~k~G~v~fr~~k 171 (242)
T 3qoy_A 101 DELINKILKEEW------TDFDVAIATPEMMPKVAKLGRILGPRGLMPSPKTGTVT---TNVEQAIKDAKRGRVEFKVDK 171 (242)
T ss_dssp HHHHHHHHHHTC------CCCSEEEECTTTHHHHGGGHHHHGGGTCSCCGGGTCBC---SCHHHHHHHHHTTEEEEECCT
T ss_pred HHHHHHHHhCCC------ccCCEEEECHHHHHHHHHHhHHhccccCCCcccCCccc---hhHHHHHHHHhcCcEEEEecC
Confidence 9999988 5554 38999999999998766 57888 888888888877 699999999998 79999999
Q ss_pred cceEEEEEecCCCCHHHHHHHHHHHHHHHHHhccCC--cccE-EEEeecCCCcccceecccc
Q 027063 162 VLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKN--WQNV-PLSEEYHGSFKPHLLRNSA 220 (229)
Q Consensus 162 ~~~i~v~VG~~~m~~~ei~eNi~a~l~~l~~~~pkg--~~nI-~l~~k~~~S~~~~~~~~~~ 220 (229)
++|++++||+++|+++||+|||.+++++|.+.+|++ |+|| +++++++-|.+.+|..+++
T Consensus 172 ~~~i~v~VG~~~m~~e~L~eNi~a~i~~l~~~~p~~~kg~~Ik~v~lkSTmGp~i~i~~~~~ 233 (242)
T 3qoy_A 172 AGNVHMPVGKISFEKEKLIDNLYAAIDAVVRAKPPGAKGQYIKNMAVSLTMSPSVKLDINEV 233 (242)
T ss_dssp TSEEEEEEEETTSCHHHHHHHHHHHHHHHHHTCCTTCCSCSEEEEEEEETTSCCEEBCHHHH
T ss_pred CcEEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCcccCCceEEEEEEECCCCCCEEEEhhHh
Confidence 999999999999999999999999999999999985 9999 9999999998888876543
No 9
>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=6.3e-45 Score=322.87 Aligned_cols=200 Identities=21% Similarity=0.295 Sum_probs=176.6
Q ss_pred HHHHHHHhhhhccCCCCccEEEEEEEcccCCCC-CCcceeeEEcCCCCCCCcEEEEEeCcccHHHHHHcCCCeeChHHHH
Q 027063 13 VSSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGLK 91 (229)
Q Consensus 13 v~~l~~~~k~~~~~~~~e~I~l~i~lk~~~~kk-~~~~~~~I~LPh~~~~~~kIcvf~~~~~~~~a~~~g~~vig~~~L~ 91 (229)
+.++++.+|+.+..+|+|+|+++|+| +++|++ ++++||.|.|||+.+++.+||||+++++.++|+++||+++|++||+
T Consensus 137 l~EAi~llK~~~~~KFdETVEl~I~L-~vDpkk~dq~vRGtV~LPhgtgk~~kVcVfa~ge~~eeAk~AGAdvVG~edLi 215 (352)
T 3bbo_D 137 LKTALSLMKQMSSTKFVETAEAHFRL-NIDPKYNDQQLRATVSLPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELI 215 (352)
T ss_dssp TTTTHHHHSTTCCSSSCCEECCEEEE-CSCTTSSTTCCEEEECCTTTSSSSSCEEEECCTTTTHHHHTTTCSEEECTTTH
T ss_pred HHHHHHHHHhccccCCCceEEEEEEe-CCCCcccccccceeecCCCCCCCccEEEEEeCchhHHHHHHcCCCccCHHHHH
Confidence 55667778887888999999999999 899986 9999999999999999999999999888999999999999999999
Q ss_pred HhhhCHHHHHHHhhcccEEEEehhhhhhhhhhhcCCCCCCCCCCccccC--cccHHHHHHHhhcc-ceeEecccceEEEE
Q 027063 92 KLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTH--QESLESKVNETKAT-VKFQLKKVLCMGVA 168 (229)
Q Consensus 92 ~~~~~~e~~rkL~~~yd~flad~~i~~~l~~~LG~~~~p~~K~p~~v~~--~~~l~~~i~~~~~~-~~~~~~~~~~i~v~ 168 (229)
++++.+ ..+||+||||++||+.|++ ||+.|+|++++|.+... +.|+.++|++++++ +.|+++++++++++
T Consensus 216 kkIKkg------~~dFD~fIAtpdmM~~lgr-LGkiLGPRGlMPnPk~GTVt~Dva~aV~e~K~G~v~fR~dK~g~ihv~ 288 (352)
T 3bbo_D 216 EQIKGG------FMDFDKLIATSDMMAKVAS-LGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIP 288 (352)
T ss_dssp HHHTTT------CCCCSEEEECSSSHHHHGG-GGGTTTTTTCSCCTTTTCBSSCHHHHHTTTTTCCEEEECCSSCEECCC
T ss_pred HHHHhc------hhhcCEEEECHHHHHHHHh-hcccccccCCCCCCcCCcccccHHHHHHHHHcCeeEEEeCCCCEEEEE
Confidence 998754 4599999999999987765 55555555554444432 37999999999986 79999999999999
Q ss_pred EecCCCCHHHHHHHHHHHHHHHHHhccCCcc--cE-EEEeecCCCcccceecccc
Q 027063 169 VGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQ--NV-PLSEEYHGSFKPHLLRNSA 220 (229)
Q Consensus 169 VG~~~m~~~ei~eNi~a~l~~l~~~~pkg~~--nI-~l~~k~~~S~~~~~~~~~~ 220 (229)
||+++|+++||+|||.+++++|.+.+|++|+ || +++++++-|.+++||.+++
T Consensus 289 VGk~sfs~EqL~ENI~Avi~~L~k~kP~~~KG~yIksv~LkSTMGPgi~I~~~~l 343 (352)
T 3bbo_D 289 FGKLNFEEEDLLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREM 343 (352)
T ss_dssp CEETTSCHHHHHHHHHHHHHHHHTTCCTTCCSCSEEEEECCBSSSCCCEECTTC-
T ss_pred EeCCCCCHHHHHHHHHHHHHHHHHhCcccccCceEEEEEEECCCCCCEEEEhhhc
Confidence 9999999999999999999999999999996 88 9999999999999998764
No 10
>3u42_A 50S ribosomal protein L1; rossmann fold, rRNA binding, RNA binding; 1.35A {Thermus thermophilus} PDB: 3u56_A 3u4m_A 1eg0_N 1vsp_A 2hgj_C 2hgq_C 2hgu_C 1vsa_A 4f9t_A* 4abs_C 3zvp_C 1zho_A 1ml5_c* 1yl3_C 1giy_C 3umy_A 2hw8_A 2j01_C 2j03_C 2om7_K* ...
Probab=100.00 E-value=1.3e-43 Score=301.63 Aligned_cols=193 Identities=23% Similarity=0.348 Sum_probs=174.6
Q ss_pred HHHHHHHHhhhhccCCCCccEEEEEEEcccCCCC-CCcceeeEEcCCCCCCCcEEEEEeCcccHHHHHHcCCCeeChHHH
Q 027063 12 AVSSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGL 90 (229)
Q Consensus 12 av~~l~~~~k~~~~~~~~e~I~l~i~lk~~~~kk-~~~~~~~I~LPh~~~~~~kIcvf~~~~~~~~a~~~g~~vig~~~L 90 (229)
.++++++.+|+.+..+|+|||+++|+| ++++++ ++++||.|.|||+++++.+|||||+++.+++|+++||+++|++||
T Consensus 22 ~~~eAi~~lk~~~~~kF~etvel~i~L-~vd~~k~dq~vrg~v~LP~g~gk~~kV~Vfa~~~~~~eAk~aGAd~vG~~dL 100 (229)
T 3u42_A 22 TIDEAAHLVKELATAKFDETVEVHAKL-GIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEI 100 (229)
T ss_dssp CHHHHHHHHHHHCCSSSCCEEEEEEEE-SSCTTCGGGCCEEEEECSSSCSTTSCEEEECCTHHHHHHHHTTCSEEECTHH
T ss_pred CHHHHHHHHHHhCCCCCCccEEEEEEE-ccCCCCCCCceeEEEECCCCCCCceEEEEecChHhHHHHHhcCCceeCcHHH
Confidence 366677788888888999999999999 689987 899999999999999999999999999999999999999999999
Q ss_pred HHhhhCHHHHHHHhhcccEEEEehhhhhh----hhhhhcC-CCCCCCCCCccccCcccHHHHHHHhhc-cceeEecccce
Q 027063 91 KKLNKNKKLVKKLAKKYHAFLASESVIKQ----IPRLLGP-GLNKAGKFPTLVTHQESLESKVNETKA-TVKFQLKKVLC 164 (229)
Q Consensus 91 ~~~~~~~e~~rkL~~~yd~flad~~i~~~----l~~~LG~-~~~p~~K~p~~v~~~~~l~~~i~~~~~-~~~~~~~~~~~ 164 (229)
++++++++. .||+|||++++|+. |+++||| ++||+.|.||++ +|+.+.|+++++ ++.||.++.++
T Consensus 101 i~kIk~g~~------~fD~~iAtpd~m~~vg~~LG~iLGPrGlMPnpk~GTvt---~dv~~~v~~~K~g~v~~r~dk~g~ 171 (229)
T 3u42_A 101 IQKILDGWM------DFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVG---FNIGEIIREIKAGRIEFRNDKTGA 171 (229)
T ss_dssp HHHHHTTCC------CCSEEEECGGGHHHHHHHHHHHHHHHTCCCCGGGTCBS---SCHHHHHHHHHTTEEEEECCTTSE
T ss_pred HHHHhcCCc------cccEEEEchHHHHHHHHhhccccccccccccCCCCCCC---CCHHHHHHHHhCceEEEEeCCCCe
Confidence 999999886 89999999999985 5689999 999999999998 699999999987 68999999999
Q ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHHHhccCCccc--E-EEEeecCCCcccc
Q 027063 165 MGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQN--V-PLSEEYHGSFKPH 214 (229)
Q Consensus 165 i~v~VG~~~m~~~ei~eNi~a~l~~l~~~~pkg~~n--I-~l~~k~~~S~~~~ 214 (229)
++++||+++|+++||.||+.+++++|.+..|.+|++ | +++++++-+.+..
T Consensus 172 i~~~IGk~~f~~e~L~eNi~a~i~~i~~~kp~~~kg~~ik~v~lssTmGp~i~ 224 (229)
T 3u42_A 172 IHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTVMGPSVR 224 (229)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHHHHHHHTCCTTCCSCSEEEEEEECSSSCCEE
T ss_pred ecccccCCCCCHHHHHHHHHHHHHHHHHhCccccCCCeEEEEEEECCCCcCeE
Confidence 999999999999999999999999999999999988 7 5555555444433
No 11
>2ftc_A Mitochondrial ribosomal protein L1; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=100.00 E-value=1.2e-38 Score=264.36 Aligned_cols=175 Identities=15% Similarity=0.131 Sum_probs=154.3
Q ss_pred cEEEEEEEcccCCCCCCcceeeEEcCCCCCCC-cEEEEEeCc-ccHHHHHHcCCCeeChHHHHHhhhCHHHHHHHhhccc
Q 027063 31 TIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK-MKVCMLGDA-QHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYH 108 (229)
Q Consensus 31 ~I~l~i~lk~~~~kk~~~~~~~I~LPh~~~~~-~kIcvf~~~-~~~~~a~~~g~~vig~~~L~~~~~~~e~~rkL~~~yd 108 (229)
.|+|++++++ .+++.++||.|.|||++++. .+||||+++ +++++|+++||+++|++||+++++.++. +||
T Consensus 2 ~ieL~m~l~~--~r~~~~~rg~V~LPhg~~k~~~~V~Vfa~~~~~~~~Ak~aGad~vg~~dLi~ki~~~~~------~fD 73 (189)
T 2ftc_A 2 DLTLDMALGK--KKNVEPFTSVLSLPYPFASEINKVAVFTENASEVKIAEENGAAFAGGTSLIQKIWDDEI------VAD 73 (189)
T ss_pred eEEEEEEecC--CccCcccceEEECCCCCCCCCCEEEEEeCChhHHHHHHHcCCCCcCHHHHHHHHHcCCc------cCC
Confidence 4789999974 46677779999999998665 499999998 5789999999999999999999988774 899
Q ss_pred EEEEehhhhhhhhhhhcC--CCCCCCCCCccccCcccHHHHHHHhhccceeEecccc--eEEEEEecCCCCHHHHHHHHH
Q 027063 109 AFLASESVIKQIPRLLGP--GLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVL--CMGVAVGNLSMEEKQIFQNVQ 184 (229)
Q Consensus 109 ~flad~~i~~~l~~~LG~--~~~p~~K~p~~v~~~~~l~~~i~~~~~~~~~~~~~~~--~i~v~VG~~~m~~~ei~eNi~ 184 (229)
+|||++++|+.|++++|+ +.||+.|.||++ +|+.++|++++++..|++++.+ |++++||+++|+++||+||+.
T Consensus 74 ~~iAtp~~m~~l~~l~~~Lg~KmP~pk~gTvt---~dv~~~v~~~k~g~~~r~~k~~~~~i~v~VG~~~~~~e~L~eNi~ 150 (189)
T 2ftc_A 74 FYVAVPEIMPELNRLRKKLNKKYPKLSRNSIG---RDIPKMLELFKNGHEIKVDEERENFLQTKIATLDMSSDQIAANLQ 150 (189)
T ss_pred EEEECHHHHHHHHHhhccccCCCCcccCCCcc---ccHHHHHHHHhcceEEEeccCCCcEEEEEEECCCCCHHHHHHHHH
Confidence 999999999988877443 358899998886 6999999999999999999998 999999999999999999999
Q ss_pred HHHHHHHHhccCCc-ccE-EEEeecCCCccccee
Q 027063 185 MSVNFLVSLLKKNW-QNV-PLSEEYHGSFKPHLL 216 (229)
Q Consensus 185 a~l~~l~~~~pkg~-~nI-~l~~k~~~S~~~~~~ 216 (229)
+++++|.+++|++| .+| +++++++.|.+..+-
T Consensus 151 a~i~~l~~~~p~~~g~~ik~v~lssTmgp~i~i~ 184 (189)
T 2ftc_A 151 AVINEVCRHRPLNLGPFVVRAFLRSSTSEGLLLK 184 (189)
T ss_pred HHHHHHHHhCchhcCccEEEEEEECCCCCCEEEe
Confidence 99999999999999 778 888888777776653
No 12
>2ov7_A 50S ribosomal protein L1; 2.30A {Thermus thermophilus} PDB: 2oum_A 2vpl_A
Probab=99.87 E-value=1.3e-21 Score=153.49 Aligned_cols=114 Identities=22% Similarity=0.331 Sum_probs=97.2
Q ss_pred cCCHHHH---HHHHHHHHHHhhhhccCCCCccEEEEEEEcccCCCC-CCcceeeEEcCCCCCCCcEEEEEeCcccHHHHH
Q 027063 3 KLQSDAL---REAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAE 78 (229)
Q Consensus 3 ~~~~~~v---~~av~~l~~~~k~~~~~~~~e~I~l~i~lk~~~~kk-~~~~~~~I~LPh~~~~~~kIcvf~~~~~~~~a~ 78 (229)
+++++.+ .+||+. +|+.+.++|+|||+++|+| ++||++ ++++||.+.|||+
T Consensus 13 kv~~~~~y~~~eAi~~----~k~~~~~kF~EtVel~i~L-~vDprk~dq~vrgtV~LP~g-------------------- 67 (137)
T 2ov7_A 13 KVDPNKIYTIDEAAHL----VKELATAKFDETVEVHAKL-GIDPRRSDQNVRGTVSLPHG-------------------- 67 (137)
T ss_dssp TSCTTCCBCHHHHHHH----HHHTCCSSSCCEEEEEEEE-SSCTTCSSCCCEEEEECTTS--------------------
T ss_pred hcCcccccCHHHHHHH----HHhcccCCCCccEEEEEEe-CCCCccccceeeEEEEcCCC--------------------
Confidence 4554444 355554 4555778999999999999 999997 9999999999997
Q ss_pred HcCCCeeChHHHHHhhhCHHHHHHHhhcccEEEEehhhhhhhhhhhcCCCCCCCCCCccccCcccHHHHHHHhhccceeE
Q 027063 79 KIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQ 158 (229)
Q Consensus 79 ~~g~~vig~~~L~~~~~~~e~~rkL~~~yd~flad~~i~~~l~~~LG~~~~p~~K~p~~v~~~~~l~~~i~~~~~~~~~~ 158 (229)
+++.||
T Consensus 68 --------------------------------------------------------------------------g~v~fr 73 (137)
T 2ov7_A 68 --------------------------------------------------------------------------GRIEFR 73 (137)
T ss_dssp --------------------------------------------------------------------------CEEEEE
T ss_pred --------------------------------------------------------------------------CeEEEE
Confidence 789999
Q ss_pred ecccceEEEEEecCCCCHHHHHHHHHHHHHHHHHhccCCcc--cE-EEEeecCCCcccce
Q 027063 159 LKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQ--NV-PLSEEYHGSFKPHL 215 (229)
Q Consensus 159 ~~~~~~i~v~VG~~~m~~~ei~eNi~a~l~~l~~~~pkg~~--nI-~l~~k~~~S~~~~~ 215 (229)
+++.+|++++||+++|+++||+||+.+++++|.+.+|.+|+ +| +++++++-+.+.+|
T Consensus 74 ~dk~~~ih~~VGk~sf~~e~L~eNi~a~i~~l~~~kp~~~kg~~ik~v~issTMGp~i~i 133 (137)
T 2ov7_A 74 NDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRI 133 (137)
T ss_dssp CCTTSEEEEEEEETTSCHHHHHHHHHHHHHHHHTTSCSSCCSCSEEEEEEEETTSCCEEB
T ss_pred ECCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHhCcccccCceEEEEEEECCCCCCEEe
Confidence 99999999999999999999999999999999999999994 88 77777666666554
No 13
>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein, nucleotide-binding, protein biosynthesis, translation, zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB: 3fik_5 3izt_C* 3izu_C* 3j01_5 3j0t_C* 3j0w_C* 3j0y_C* 3j11_C* 3j12_C* 3j14_C* 3kcr_5 2rdo_9 2gya_2 2gyc_2
Probab=79.97 E-value=0.6 Score=39.10 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=19.9
Q ss_pred hhhhhhhhcC-CCCCCCCCCcccc
Q 027063 117 IKQIPRLLGP-GLNKAGKFPTLVT 139 (229)
Q Consensus 117 ~~~l~~~LG~-~~~p~~K~p~~v~ 139 (229)
++.|+++||| ++||+.|.||++.
T Consensus 124 l~~LGkiLgprGlmP~pk~gTvt~ 147 (234)
T 2wwq_5 124 VGQLGQVLGPRGLMPNPKVGTVTP 147 (234)
T ss_dssp TTSSCSCCCSSCCSCCTTTTCBCS
T ss_pred HHHHhhhhccCCCCCCccCCCccc
Confidence 5569999999 9999999998663
No 14
>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=75.53 E-value=1.4 Score=38.97 Aligned_cols=22 Identities=36% Similarity=0.609 Sum_probs=19.0
Q ss_pred hhhhhhhhcC-CCCCCCCCCccc
Q 027063 117 IKQIPRLLGP-GLNKAGKFPTLV 138 (229)
Q Consensus 117 ~~~l~~~LG~-~~~p~~K~p~~v 138 (229)
++.|+++||| ++||+.|.||++
T Consensus 238 lgrLGkiLGPRGlMPnPk~GTVt 260 (352)
T 3bbo_D 238 VASLGRILGPRGLMPTPKAGTVT 260 (352)
T ss_dssp HGGGGGTTTTTTCSCCTTTTCBS
T ss_pred HHhhcccccccCCCCCCcCCccc
Confidence 5669999999 999999999754
No 15
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=69.03 E-value=11 Score=27.41 Aligned_cols=73 Identities=15% Similarity=0.252 Sum_probs=47.8
Q ss_pred CcEEEEEeCcccHHHHHHcCCCee---ChHHHHHhhhCHHHHHHHhhcccEEEEehhhhhhhhhhhcCCCCCCCCCCccc
Q 027063 62 KMKVCMLGDAQHVEEAEKIGLDYM---DVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLV 138 (229)
Q Consensus 62 ~~kIcvf~~~~~~~~a~~~g~~vi---g~~~L~~~~~~~e~~rkL~~~yd~flad~~i~~~l~~~LG~~~~p~~K~p~~v 138 (229)
..+++|++|.+...--+-+|+++. +.+++.+.++..-. .++|.+++-+.++...++..+-. +..+...|+++
T Consensus 3 ~mkiaVIgD~dtv~GFrLaGi~~~~v~~~ee~~~~~~~l~~----~~digIIlIte~~a~~i~~~i~~-~~~~~~~P~Il 77 (109)
T 2d00_A 3 PVRMAVIADPETAQGFRLAGLEGYGASSAEEAQSLLETLVE----RGGYALVAVDEALLPDPERAVER-LMRGRDLPVLL 77 (109)
T ss_dssp CCCEEEEECHHHHHHHHHTTSEEEECSSHHHHHHHHHHHHH----HCCCSEEEEETTTCSCHHHHHHH-HTTCCCCCEEE
T ss_pred ccEEEEEeCHHHHHHHHHcCCeEEEeCCHHHHHHHHHHHhh----CCCeEEEEEeHHHHHhhHHHHHH-HHhCCCCeEEE
Confidence 358999999766555566788732 55666655554332 13789999999998877766553 22345567766
Q ss_pred c
Q 027063 139 T 139 (229)
Q Consensus 139 ~ 139 (229)
.
T Consensus 78 ~ 78 (109)
T 2d00_A 78 P 78 (109)
T ss_dssp E
T ss_pred E
Confidence 3
No 16
>3j21_A 50S ribosomal protein L1P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=65.50 E-value=2.8 Score=34.50 Aligned_cols=21 Identities=38% Similarity=0.468 Sum_probs=18.4
Q ss_pred hhh-hhhhhcC-CCCCCCCCCcc
Q 027063 117 IKQ-IPRLLGP-GLNKAGKFPTL 137 (229)
Q Consensus 117 ~~~-l~~~LG~-~~~p~~K~p~~ 137 (229)
+|. |+++||| ++||+.+.||+
T Consensus 117 l~k~LGk~LgprgkmP~pk~gtv 139 (216)
T 3j21_A 117 IGRYLGRYLGPRNKMPVVVPPTL 139 (216)
T ss_dssp HHHHHHHHHTTSSSSCCTTTTCB
T ss_pred HHHHHHHHhccCCccCCCcCCcH
Confidence 555 9999999 99999999985
No 17
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=56.04 E-value=11 Score=27.79 Aligned_cols=91 Identities=15% Similarity=0.264 Sum_probs=56.1
Q ss_pred cEEEEEeCcccHHHHHHcCCCee---ChHHHHHhhhCHHHHHHHhhcccEEEEehhhhhhhhhhhcCCCCCCCCCCcccc
Q 027063 63 MKVCMLGDAQHVEEAEKIGLDYM---DVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVT 139 (229)
Q Consensus 63 ~kIcvf~~~~~~~~a~~~g~~vi---g~~~L~~~~~~~e~~rkL~~~yd~flad~~i~~~l~~~LG~~~~p~~K~p~~v~ 139 (229)
.||+|++|.+...--+-+|+++. +.+++.+.++..-. .+|.+++-+.++...++..+-. +.+...|+++.
T Consensus 3 mKiaVIGD~Dtv~GFrLaGie~~~v~~~ee~~~~~~~l~~-----~digIIlIte~ia~~i~~~i~~--~~~~~~P~Ive 75 (115)
T 3aon_B 3 YKIGVVGDKDSVSPFRLFGFDVQHGTTKTEIRKTIDEMAK-----NEYGVIYITEQCANLVPETIER--YKGQLTPAIIL 75 (115)
T ss_dssp EEEEEESCHHHHGGGGGGTCEEECCCSHHHHHHHHHHHHH-----TTEEEEEEEHHHHTTCHHHHHH--HHTSSSCEEEE
T ss_pred eEEEEEECHHHHHHHHHcCCeEEEeCCHHHHHHHHHHHHh-----cCceEEEEeHHHHHHhHHHHHH--HhCCCCCEEEE
Confidence 48999998655444455677632 44555555444221 2677889999999988887775 44666788773
Q ss_pred -C----c-----ccHHHHHHHhhc-cceeEec
Q 027063 140 -H----Q-----ESLESKVNETKA-TVKFQLK 160 (229)
Q Consensus 140 -~----~-----~~l~~~i~~~~~-~~~~~~~ 160 (229)
+ . +.+.+.|+++.+ .+.|.-+
T Consensus 76 IPs~~g~~~~~~~~i~~~V~~aiG~di~~~~~ 107 (115)
T 3aon_B 76 IPSHQGTLGIGLEEIQNSVEKAVGQNILSGPS 107 (115)
T ss_dssp ECBTTBCCSHHHHHHHHHHHHHTTCC------
T ss_pred ECCCCCCCCccHHHHHHHHHHHhCcceEecCC
Confidence 1 1 247788888877 4444443
No 18
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=52.25 E-value=31 Score=24.69 Aligned_cols=72 Identities=15% Similarity=0.188 Sum_probs=48.1
Q ss_pred cEEEEEeCcccHHHHHHcCCCee----ChHHHHHhhhCHHHHHHHhhcccEEEEehhhhhhhhhhhcCCCCCCCCCCccc
Q 027063 63 MKVCMLGDAQHVEEAEKIGLDYM----DVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLV 138 (229)
Q Consensus 63 ~kIcvf~~~~~~~~a~~~g~~vi----g~~~L~~~~~~~e~~rkL~~~yd~flad~~i~~~l~~~LG~~~~p~~K~p~~v 138 (229)
--+.|+.|.+..---+-+|+..+ +.+++.+.++..-. .++|.+++-+.++...++..+-. +..+...|+++
T Consensus 10 ~~~aVIGD~Dtv~GFrLaGi~~~~~~~~~ee~~~~~~~l~~----~~digIIlIte~ia~~i~~~i~~-~~~~~~~P~Ii 84 (102)
T 2i4r_A 10 HMLAVVGDPDFTIGFMLAGISDIYEVTSDEEIVKAVEDVLK----RDDVGVVIMKQEYLKKLPPVLRR-EIDEKVEPTFV 84 (102)
T ss_dssp CEEEEEECHHHHHHHHHTTCCCEEECCSHHHHHHHHHHHHH----CSSEEEEEEEGGGSTTSCHHHHT-TTTTCCSSEEE
T ss_pred eeEEEEcCHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHhh----CCCeEEEEEeHHHHHHHHHHHHH-HHhCCCccEEE
Confidence 35677888766555566787722 44566665554322 12578899999999999988774 44455778888
Q ss_pred c
Q 027063 139 T 139 (229)
Q Consensus 139 ~ 139 (229)
.
T Consensus 85 e 85 (102)
T 2i4r_A 85 S 85 (102)
T ss_dssp E
T ss_pred E
Confidence 4
No 19
>2kfe_A Meucin-24; alpha-helix, antimicrobial protein; NMR {Synthetic}
Probab=51.79 E-value=19 Score=19.43 Aligned_cols=23 Identities=9% Similarity=0.199 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHhccCCcc
Q 027063 177 KQIFQNVQMSVNFLVSLLKKNWQ 199 (229)
Q Consensus 177 ~ei~eNi~a~l~~l~~~~pkg~~ 199 (229)
.|+..||+..+..+.++...||.
T Consensus 4 kei~~kiK~kl~~akdK~k~~w~ 26 (26)
T 2kfe_A 4 REFMSNLKEKLSGVKEKMKNSXX 26 (26)
T ss_dssp HHHHHHHHHHHHHHHHHTTTC--
T ss_pred hHHHHHHHHHHHHHHHHHHccCC
Confidence 58999999999999999988884
No 20
>2qai_A V-type ATP synthase subunit F; VATF_pyrfu, ATPF, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Pyrococcus furiosus}
Probab=49.12 E-value=34 Score=24.90 Aligned_cols=83 Identities=17% Similarity=0.253 Sum_probs=49.9
Q ss_pred EEEEEeCcccHHHHHHcCCC--ee--Ch----HHHHHhhhCHHHHHHHhhcccEEEEehhhhhhhh--hhhcCCCCCCCC
Q 027063 64 KVCMLGDAQHVEEAEKIGLD--YM--DV----EGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIP--RLLGPGLNKAGK 133 (229)
Q Consensus 64 kIcvf~~~~~~~~a~~~g~~--vi--g~----~~L~~~~~~~e~~rkL~~~yd~flad~~i~~~l~--~~LG~~~~p~~K 133 (229)
||+|++|.+...--+-+|+. ++ .. +++.+.++..-. .+.|.+++-+.++...++ ..+-
T Consensus 2 KIaVIGD~Dtv~GFrLaGi~~~~v~~~~~t~~ee~~~~~~~l~~----~~digIIlIte~ia~~i~~~~~i~-------- 69 (111)
T 2qai_A 2 KIVVMGDSDTVVGFRLAGVHEAYEYDESLESVERARNKLRELLE----RDDVGIILITERLAQRIGSLPEVK-------- 69 (111)
T ss_dssp EEEEEECHHHHHHHHHHTCSEEEECCSSHHHHHHHHHHHHHHHT----CTTEEEEEEEHHHHHHHCSCCCCS--------
T ss_pred EEEEEECHHHHHHHHHcCCceEEEecCCCCCHHHHHHHHHHHhh----CCCeEEEEEcHHHHhhcccccccC--------
Confidence 78999997655545567877 22 44 566555544321 136889999999988888 4443
Q ss_pred CCcccc-C--------cccHHHHHHHhhccceeE
Q 027063 134 FPTLVT-H--------QESLESKVNETKATVKFQ 158 (229)
Q Consensus 134 ~p~~v~-~--------~~~l~~~i~~~~~~~~~~ 158 (229)
.|+++. + .+.+.+.++++.+.--++
T Consensus 70 ~P~IleIPs~~g~~~~~d~i~~~V~~aiG~di~~ 103 (111)
T 2qai_A 70 FPIILQIPDKFGSIYGEDILRDVVRRAIGVELKR 103 (111)
T ss_dssp SSEEEEECTTC------CTHHHHHHHHC------
T ss_pred CCEEEEECCCCCCCchHHHHHHHHHHHhChhHHh
Confidence 566552 1 146788888877643333
No 21
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5 1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z
Probab=39.75 E-value=6.5 Score=32.28 Aligned_cols=19 Identities=21% Similarity=0.176 Sum_probs=16.2
Q ss_pred hhh-hhhhhcC-CCCCCCCCC
Q 027063 117 IKQ-IPRLLGP-GLNKAGKFP 135 (229)
Q Consensus 117 ~~~-l~~~LG~-~~~p~~K~p 135 (229)
++. |+++||| ++||+.+.|
T Consensus 120 l~~~LG~~LgprgkmP~p~~g 140 (217)
T 1mzp_A 120 AGRILGPALGPRGKFPTPLPN 140 (217)
T ss_dssp HHHHTHHHHGGGTCCEEECCS
T ss_pred HHHHHhhhccccCCCCcccCC
Confidence 565 9999999 999987776
No 22
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein, translation repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB: 1cjs_A 1u63_A 1dwu_A
Probab=39.70 E-value=6.2 Score=32.43 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=15.9
Q ss_pred hhh-hhhhhcC-CCCCCCCCC
Q 027063 117 IKQ-IPRLLGP-GLNKAGKFP 135 (229)
Q Consensus 117 ~~~-l~~~LG~-~~~p~~K~p 135 (229)
++. |+++||| ++||+.+.|
T Consensus 115 l~k~LGk~LgprgkmP~pk~g 135 (219)
T 1i2a_A 115 IGRYMGVILGPRGKMPKPVPA 135 (219)
T ss_dssp HHHHTHHHHGGGTCCCEEECT
T ss_pred HHHHHhhhhcccCCCCcccCC
Confidence 555 9999999 999987766
No 23
>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=36.82 E-value=5.9 Score=32.41 Aligned_cols=20 Identities=30% Similarity=0.394 Sum_probs=16.5
Q ss_pred hhhh-hhhhhcC-CCCCCCCCC
Q 027063 116 VIKQ-IPRLLGP-GLNKAGKFP 135 (229)
Q Consensus 116 i~~~-l~~~LG~-~~~p~~K~p 135 (229)
.++. |+++||| ++||+.+.|
T Consensus 114 ~l~~~LGk~LgprgkmP~pk~g 135 (212)
T 2zkr_5 114 DIGRYLGTVLGPRGKMPEPLDP 135 (212)
T ss_dssp HHHHHTHHHHHHHTCCEEECCS
T ss_pred HHHHHHhhhccccCCcCcccCC
Confidence 3565 9999999 999987776
No 24
>2ov6_A V-type ATP synthase subunit F; F subunit, A1AO ATP synthase, hydrolase; NMR {Methanosarcina mazei}
Probab=28.67 E-value=82 Score=22.20 Aligned_cols=70 Identities=16% Similarity=0.246 Sum_probs=44.7
Q ss_pred EEEEEeCcccHHHHHHcCCC-ee---ChHHHHHhhhCHHHHHHHhhcccEEEEehhhhhhhhhhhcCCCCCCCCCCccc
Q 027063 64 KVCMLGDAQHVEEAEKIGLD-YM---DVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLV 138 (229)
Q Consensus 64 kIcvf~~~~~~~~a~~~g~~-vi---g~~~L~~~~~~~e~~rkL~~~yd~flad~~i~~~l~~~LG~~~~p~~K~p~~v 138 (229)
+|+|++|.+...--+-+|+. ++ +.+++.+.++..-. .++|..++-+.++...++..+-. .+.+...|+++
T Consensus 2 kiaVIGD~dtv~GFrLaGi~~v~~v~~~ee~~~~~~~l~~----~~digIIlite~~a~~i~~~i~~-~~~~~~~P~Iv 75 (101)
T 2ov6_A 2 ELAVIGKSEFVTGFRLAGISKVYETPDIPATESAVRSVLE----DKSVGILVMHNDDIGNLPEVLRK-NLNESVQPTVV 75 (101)
T ss_dssp CEEEEECHHHHHHHHHHTCCEEEECCSTTTHHHHHHHHHH----HTSSSEEEEEHHHHTTCTTTTHH-HHHHHCCSCEE
T ss_pred EEEEEECHHHHHHHHHcCCCceEecCCHHHHHHHHHHHhh----CCCeEEEEEcHHHHHHhHHHHHH-HHhCCCCcEEE
Confidence 68999987665555667887 33 55666665554322 13789999999998888766521 22233456665
No 25
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=24.62 E-value=57 Score=25.31 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=19.1
Q ss_pred CcEEEEEeCc------ccHHHHHHcCCCeeCh
Q 027063 62 KMKVCMLGDA------QHVEEAEKIGLDYMDV 87 (229)
Q Consensus 62 ~~kIcvf~~~------~~~~~a~~~g~~vig~ 87 (229)
..++|+|+++ +..+.+.+.|++.++.
T Consensus 14 ~~~l~~It~~~~~~~~~~~~~~~~~G~~~i~l 45 (215)
T 1xi3_A 14 KLKLYVITDRRLKPEVESVREALEGGATAIQM 45 (215)
T ss_dssp HTSEEEECCTTTSCHHHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEECCchhhHHHHHHHHHHCCCCEEEE
Confidence 3578999976 4556778899996654
No 26
>3lq0_A Proastacin; metallopeptidase, zymogen activation, proenzyme, protease, D bond, hydrolase, metal-binding, metalloprotease, zymogen; 1.45A {Astacus astacus} PDB: 1iab_A 1iaa_A 1ast_A 1iac_A 1iad_A 1iae_A 1qji_A* 1qjj_A
Probab=21.55 E-value=2.8e+02 Score=22.57 Aligned_cols=58 Identities=12% Similarity=0.194 Sum_probs=31.1
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHHHhccCCcccEEEEeecCCCcccceecccccccccccCC
Q 027063 164 CMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVPLSEEYHGSFKPHLLRNSALCWSFVGKT 229 (229)
Q Consensus 164 ~i~v~VG~~~m~~~ei~eNi~a~l~~l~~~~pkg~~nI~l~~k~~~S~~~~~~~~~~~~~~~~~~~ 229 (229)
.|...|.. ++++ ..+-|..+++...+.- .|.+.-.++...-.-+.+..--|||+||..
T Consensus 48 ~VpY~I~~--~t~~-~~~~I~~Am~~w~~~T-----CIrFvprt~e~dyI~f~~~~~GC~S~vG~~ 105 (235)
T 3lq0_A 48 VIPYTFAG--VSGA-DQSAILSGMQELEEKT-----CIRFVPRTTESDYVEIFTSGSGCWSYVGRI 105 (235)
T ss_dssp EEEEEEES--CCHH-HHHHHHHHHHHHHHHS-----SCEEEECSSCSSEEEEESSSSSEEEESSCC
T ss_pred EEEEEEcC--CCHH-HHHHHHHHHHHHHhcc-----cceEEEcCCCCceEEEEeCCCCCccccCCc
Confidence 45555555 5543 4677888888877654 231111222222222333333699999963
Done!