RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 027063
(229 letters)
>3o58_A L10A, 60S ribosomal protein L1; ribosomal RNA and proteins,
ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3izc_A
3izs_A 1s1i_A 3o5h_A 2noq_G 3j0l_B 3j0o_B 3j0p_B 3j0q_B
3jyw_A
Length = 217
Score = 277 bits (711), Expect = 9e-96
Identities = 130/201 (64%), Positives = 163/201 (81%)
Query: 1 MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPR 60
MSK+ S +RE V +++YS ETKKRNF ET+ELQ+GLKNYDPQ+DKRFSGS+KLP+ PR
Sbjct: 1 MSKITSSQVREHVKELLKYSNETKKRNFLETVELQVGLKNYDPQRDKRFSGSLKLPNCPR 60
Query: 61 PKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQI 120
P M +C+ GDA V+ A+ G+D M V+ LKKLNKNKKL+KKL+KKY+AF+ASE +IKQ+
Sbjct: 61 PNMSICIFGDAFDVDRAKSCGVDAMSVDDLKKLNKNKKLIKKLSKKYNAFIASEVLIKQV 120
Query: 121 PRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIF 180
PRLLGP L+KAGKFPT V+H + L KV + ++T+KFQLKKVLC+ VAVGN+ MEE +
Sbjct: 121 PRLLGPQLSKAGKFPTPVSHNDDLYGKVTDVRSTIKFQLKKVLCLAVAVGNVEMEEDVLV 180
Query: 181 QNVQMSVNFLVSLLKKNWQNV 201
+ MSVNF VSLLKKNWQNV
Sbjct: 181 NQILMSVNFFVSLLKKNWQNV 201
>3iz5_A 60S ribosomal protein L1 (L1P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_A
Length = 216
Score = 260 bits (667), Expect = 5e-89
Identities = 175/201 (87%), Positives = 194/201 (96%), Gaps = 1/201 (0%)
Query: 1 MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPR 60
MSKLQSDA+++A++ IV ++E KKR FTET+ELQIGLKNYDPQKDKRFSGSVKLPHIPR
Sbjct: 1 MSKLQSDAVKDAITQIVGEARE-KKRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPR 59
Query: 61 PKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQI 120
PKM+VCMLGDAQHV++AEK+GLDYMDVE LKK+NKNKKLVKKLAKKYHAFLASE++IKQI
Sbjct: 60 PKMRVCMLGDAQHVDQAEKMGLDYMDVESLKKMNKNKKLVKKLAKKYHAFLASEAIIKQI 119
Query: 121 PRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIF 180
PRLLGPGLNKAGKFPTLV+HQESLE+KVNETKATVKFQLKKVLCMGVAVGNLSM+EKQI
Sbjct: 120 PRLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMDEKQIQ 179
Query: 181 QNVQMSVNFLVSLLKKNWQNV 201
QN+QMSVNFLVSLLKKNWQNV
Sbjct: 180 QNIQMSVNFLVSLLKKNWQNV 200
>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 212
Score = 251 bits (643), Expect = 2e-85
Identities = 47/199 (23%), Positives = 89/199 (44%), Gaps = 4/199 (2%)
Query: 4 LQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDP-QKDKRFSGSVKLPHIPRPK 62
+ + AVS + ++ +RNF ET++L + L++ D R SV LP +
Sbjct: 1 MADQEIENAVSRAL---EDAPERNFRETVDLAVNLRDLDLNDPSNRVDESVVLPAGTGQE 57
Query: 63 MKVCMLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPR 122
+ + + + AE++ D +D + L++L + K LA F+A + +++ I R
Sbjct: 58 TTIVVFAEGETALRAEEVADDVLDEDELEELGGDDDAAKDLADDTDFFIAEKGLMQDIGR 117
Query: 123 LLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQN 182
LG L GK P + + + + K TV+ + + VG M + I N
Sbjct: 118 YLGTVLGPRGKMPEPLDPDDDVVEVIERMKNTVQLRSGERRTFHTRVGAEDMSAENIADN 177
Query: 183 VQMSVNFLVSLLKKNWQNV 201
+ + + L + L+K N+
Sbjct: 178 IDVILRRLHADLEKGPLNI 196
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A
{Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5
1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z
Length = 217
Score = 236 bits (605), Expect = 1e-79
Identities = 54/198 (27%), Positives = 99/198 (50%), Gaps = 4/198 (2%)
Query: 6 SDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMK 64
++L EA+ + ++ KRNFT+++E+ + K D +K D + V LP P +
Sbjct: 5 KESLIEALK-LALSTEYNVKRNFTQSVEIILTFKGIDMKKGDLKLREIVPLPKQPSKAKR 63
Query: 65 VCMLGDAQHVEEAEKIGLDY-MDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRL 123
V ++ ++ +E A+K + E L+KL K+ VKKLA++ FL ++ + R+
Sbjct: 64 VLVVPSSEQLEYAKKASPKVVITREELQKLQGQKRPVKKLARQNEWFLINQESMALAGRI 123
Query: 124 LGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNV 183
LGP L GKFPT + + + +N K +V + K + V +G M+ + + +N
Sbjct: 124 LGPALGPRGKFPTPLPNTADISEYINRFKRSVLVKTKDQPQVQVFIGTEDMKPEDLAENA 183
Query: 184 QMSVNFLVSLLKKNWQNV 201
+N + + K N+
Sbjct: 184 IAVLNAIENKAKVE-TNL 200
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein,
translation repressor, ribosome; 1.85A
{Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB:
1cjs_A 1u63_A 1dwu_A
Length = 219
Score = 234 bits (599), Expect = 1e-78
Identities = 57/196 (29%), Positives = 99/196 (50%), Gaps = 4/196 (2%)
Query: 7 DALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKV 65
+AL +AV + +K RNFT++ E LK D +K + R V LPH + K+
Sbjct: 4 EALLQAVKEARELAK---PRNFTQSFEFIATLKEIDMRKPENRIKTEVVLPHGRGKEAKI 60
Query: 66 CMLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLG 125
++G ++AE++GL + E +++L KNK+ ++K+AK + F+A ++ I R +G
Sbjct: 61 AVIGTGDLAKQAEELGLTVIRKEEIEELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMG 120
Query: 126 PGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQM 185
L GK P V +++ V K TV + V VGN M ++QI N++
Sbjct: 121 VILGPRGKMPKPVPANANIKPLVERLKKTVVINTRDKPYFQVLVGNEKMTDEQIVDNIEA 180
Query: 186 SVNFLVSLLKKNWQNV 201
+N + +K ++
Sbjct: 181 VLNVVAKKYEKGLYHI 196
>3qoy_A 50S ribosomal protein L1; beta-alpha-beta, structural constituent
of ribosome, rRNA BI regulation of translation,
translation, ribosomal RNA; 2.10A {Aquifex aeolicus}
Length = 242
Score = 53.9 bits (130), Expect = 5e-09
Identities = 54/196 (27%), Positives = 103/196 (52%), Gaps = 24/196 (12%)
Query: 8 ALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVC 66
L EAV +++ +E +R F ET+EL + L N DP+ D+ GSV LPH +KV
Sbjct: 22 TLEEAVD-LLKKMEEVLQRRFDETVELAMRL-NVDPRYADQMVRGSVVLPHGLGKPIKVV 79
Query: 67 MLGDAQHVEEAEKIGLDYMDVEGL-KKLNKNKKLVKKLAKKYHAFLASESVIKQIPRL-- 123
+ + ++ ++AE+ G DY+ + L K+ K + + +A+ ++ ++ +L
Sbjct: 80 VFAEGEYAKKAEEAGADYVGGDELINKILKEEWT------DFDVAIATPEMMPKVAKLGR 133
Query: 124 -LGP-GL--N-KAGKFPTLVTHQESLESKVNETKA-TVKFQLKKVLCMGVAVGNLSMEEK 177
LGP GL + K G VT ++E + + K V+F++ K + + VG +S E++
Sbjct: 134 ILGPRGLMPSPKTGT----VT--TNVEQAIKDAKRGRVEFKVDKAGNVHMPVGKISFEKE 187
Query: 178 QIFQNVQMSVNFLVSL 193
++ N+ +++ +V
Sbjct: 188 KLIDNLYAAIDAVVRA 203
>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein,
nucleotide-binding, protein biosynthesis, translation,
zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB:
3fik_5 3izt_C* 3izu_C* 3j01_5 3j0t_C* 3j0w_C* 3j0y_C*
3j11_C* 3j12_C* 3j14_C* 3kcr_5 2rdo_9 2gya_2 2gyc_2
Length = 234
Score = 51.1 bits (123), Expect = 3e-08
Identities = 42/189 (22%), Positives = 83/189 (43%), Gaps = 32/189 (16%)
Query: 8 ALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVC 66
+ EA++ + KE F E++++ + L D +K D+ G+ LPH ++V
Sbjct: 22 DINEAIALL----KELATAKFVESVDVAVNL-GIDARKSDQNVRGATVLPHGTGRSVRVA 76
Query: 67 MLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAF---LASESVIKQIPRL 123
+ + E A+ G + + +E L ++ K F +AS ++ + +L
Sbjct: 77 VFTQGANAEAAKAAGAELVGME---------DLADQIKKGEMNFDVVIASPDAMRVVGQL 127
Query: 124 ---LGP-GL--N-KAGKFPTLVTHQESLESKVNETKA-TVKFQLKKVLCMGVAVGNLSME 175
LGP GL N K G VT ++ V KA V+++ K + +G + +
Sbjct: 128 GQVLGPRGLMPNPKVGT----VT--PNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFD 181
Query: 176 EKQIFQNVQ 184
++ +N++
Sbjct: 182 ADKLKENLE 190
>4f9t_A 50S ribosomal protein L1; rossman fold, RNA; HET: MPD; 1.46A
{Thermus thermophilus} PDB: 3u4m_A 1eg0_N 1vsp_A 2hgj_C
2hgq_C 2hgu_C 1vsa_A 4abs_C 3zvp_C 1zho_A 1ml5_c* 1yl3_C
1giy_C 2hw8_A 2j01_C 2j03_C 2jl6_C 2jl8_C 2om7_K* 2v47_C
...
Length = 229
Score = 50.8 bits (122), Expect = 5e-08
Identities = 50/199 (25%), Positives = 93/199 (46%), Gaps = 33/199 (16%)
Query: 8 ALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVC 66
+ EA + KE F ET+E+ L DP++ D+ G+V LPH +++V
Sbjct: 22 TIDEAAHLV----KELATAKFDETVEVHAKL-GIDPRRSDQNVRGTVSLPHGLGKQVRVL 76
Query: 67 MLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAF---LAS----ESVIKQ 119
+ + ++EAE+ G DY+ E ++++K+ + F +A+ +V +
Sbjct: 77 AIAKGEKIKEAEEAGADYVGGE---------EIIQKILDGWMDFDAVVATPDVMGAVGSK 127
Query: 120 IPRLLGP-GL--N-KAGKFPTLVTHQESLESKVNETKA-TVKFQLKKVLCMGVAVGNLSM 174
+ R+LGP GL N KAG V ++ + E KA ++F+ K + VG S
Sbjct: 128 LGRILGPRGLLPNPKAGT----VG--FNIGEIIREIKAGRIEFRNDKTGAIHAPVGKASF 181
Query: 175 EEKQIFQNVQMSVNFLVSL 193
+++ N++ + L +
Sbjct: 182 PPEKLADNIRAFIRALEAH 200
>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 352
Score = 50.7 bits (121), Expect = 9e-08
Identities = 48/198 (24%), Positives = 90/198 (45%), Gaps = 32/198 (16%)
Query: 8 ALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVC 66
L+ A+S + K+ F ET E L N DP+ D++ +V LP +K+
Sbjct: 136 DLKTALSLM----KQMSSTKFVETAEAHFRL-NIDPKYNDQQLRATVSLPKGTGKTVKIA 190
Query: 67 MLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAF---LASESVIKQIPRL 123
+L ++EA+ G D + E +L++++ + F +A+ ++ ++ L
Sbjct: 191 VLAQGDKIDEAKAAGADIVGGE---------ELIEQIKGGFMDFDKLIATSDMMAKVASL 241
Query: 124 ---LGP-GL--N-KAGKFPTLVTHQESLESKVNETKA-TVKFQLKKVLCMGVAVGNLSME 175
LGP GL KAG VT ++ V E K V+F++ K + + G L+ E
Sbjct: 242 GRILGPRGLMPTPKAGT----VT--PNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFE 295
Query: 176 EKQIFQNVQMSVNFLVSL 193
E+ + N+ ++ + +
Sbjct: 296 EEDLLINLFATIKSVETN 313
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.8 bits (97), Expect = 1e-04
Identities = 28/180 (15%), Positives = 71/180 (39%), Gaps = 33/180 (18%)
Query: 7 DALREAVSSIVQ-YSKETKKRNF--------TETIELQIGLKNYDPQKDKRFSGSVKLP- 56
L +VQ + +E + N+ TE + + + Y Q+D+ ++ +
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 57 -HIPRPKMKVCMLGDA-QHVEEAEKIGLDYMDVEGLKK------LNKNKKLVKKLAKKYH 108
++ R + L A + A+ + +D + G K + + K+ K+ +
Sbjct: 129 YNVSRLQ-PYLKLRQALLELRPAKNVLIDGV--LGSGKTWVALDVCLSYKVQCKMD--FK 183
Query: 109 AF-------LASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKK 161
F + E+V++ + +LL + + H +++ +++ +A ++ LK
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLL---YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Score = 41.0 bits (95), Expect = 2e-04
Identities = 17/111 (15%), Positives = 37/111 (33%), Gaps = 27/111 (24%)
Query: 9 LREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKR-------FSGSVKLPHIPRP 61
+R+ +++ K T IE L +P + ++ F S +P
Sbjct: 337 IRDGLATW-DNWKHVNCDKLTTIIE--SSLNVLEPAEYRKMFDRLSVFPPSAHIP----- 388
Query: 62 KMKV-CMLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFL 111
+ ++ + + + KL+K LV+K K+ +
Sbjct: 389 -TILLSLIWFDVIKSDVMVV---------VNKLHK-YSLVEKQPKESTISI 428
Score = 29.1 bits (64), Expect = 1.5
Identities = 37/216 (17%), Positives = 69/216 (31%), Gaps = 81/216 (37%)
Query: 70 DAQHVEEAEKIGL-----DYM-----DVEGLKKL-----NKNKKLVKK-----LAKKYHA 109
D + V++ K L D++ V G +L +K +++V+K L Y
Sbjct: 34 DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY-K 92
Query: 110 FLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLE------SKVNETKATVKFQLKKVL 163
FL S IK R P + + ++ L +K N ++ +L++ L
Sbjct: 93 FLMSP--IKTEQR--QPSMMTR----MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL 144
Query: 164 C------------MG---------VAVGNLSMEEK---QIF-----------QNVQMSVN 188
+ + ++ K +IF ++M
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204
Query: 189 FLVSLLKKNW-------QNVPLSEEYHGSFKPHLLR 217
L+ + NW N+ L S + L R
Sbjct: 205 -LLYQIDPNWTSRSDHSSNIKLRIH---SIQAELRR 236
Score = 27.5 bits (60), Expect = 5.2
Identities = 34/174 (19%), Positives = 63/174 (36%), Gaps = 48/174 (27%)
Query: 72 QHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKA 131
E+A D DV+ + K +K+ + + + S+ + RL
Sbjct: 23 SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI-------IMSKDAVSGTLRL-------- 67
Query: 132 GKFPTLVTHQESLESK-VNET-KATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNF 189
F TL++ QE + K V E + KF + + E++Q +M
Sbjct: 68 --FWTLLSKQEEMVQKFVEEVLRINYKFLMSP----------IKTEQRQPSMMTRM---- 111
Query: 190 LVSLLKKNWQNVPLSEEYHGS-FKPHL-LRNSALC------WSFV------GKT 229
+ + + + + +Y+ S +P+L LR AL + GKT
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ-ALLELRPAKNVLIDGVLGSGKT 164
>2ftc_A Mitochondrial ribosomal protein L1; mitochondrial ribosome, large
ribosomal subunit, ribosomal R ribosome; 12.10A {Bos
taurus}
Length = 189
Score = 34.1 bits (79), Expect = 0.015
Identities = 30/175 (17%), Positives = 64/175 (36%), Gaps = 33/175 (18%)
Query: 32 IELQIGLKNYDPQK-DKRFSGSVKLPH-IPRPKMKVCML-GDAQHVEEAEKIGLDYMDVE 88
++L + + +K + F+ + LP+ KV + +A V+ AE+ G +
Sbjct: 1 LDLTLDM-ALGKKKNVEPFTSVLSLPYPFASEINKVAVFTENASEVKIAEENGAAFAGGT 59
Query: 89 GLKKLNKNKKLVKKLAKKYHAF---LASESVIKQIPRL---LGPGLNKAGKFPTL----V 138
L++K+ +A ++ ++ RL L K+P L +
Sbjct: 60 ---------SLIQKIWDDEIVADFYVAVPEIMPELNRLRKKLNK------KYPKLSRNSI 104
Query: 139 THQESLESKVNETKA--TVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLV 191
+ + K +K ++ + + L M QI N+Q +N +
Sbjct: 105 GR--DIPKMLELFKNGHEIKVDEERENFLQTKIATLDMSSDQIAANLQAVINEVC 157
>2ov7_A 50S ribosomal protein L1; 2.30A {Thermus thermophilus} PDB: 2oum_A
2vpl_A
Length = 137
Score = 31.1 bits (71), Expect = 0.12
Identities = 14/100 (14%), Positives = 34/100 (34%), Gaps = 9/100 (9%)
Query: 92 KLNKNKKLVKKLAKKYHAFLASE--SVIKQIPRLLGP-GLN---KAGKFPTLVTHQESLE 145
K K + + + + E ++K++ + K G P +
Sbjct: 2 KHGKRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQN--VR 59
Query: 146 SKVNETKAT-VKFQLKKVLCMGVAVGNLSMEEKQIFQNVQ 184
V+ ++F+ K + VG S +++ N++
Sbjct: 60 GTVSLPHGGRIEFRNDKTGAIHAPVGKASFPPEKLADNIR 99
>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A
{Mycobacterium abscessus} PDB: 3qka_A
Length = 262
Score = 29.5 bits (67), Expect = 0.74
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 51 GSVKLPH-IPRPK-MKVCMLGDAQHVEEAEKIGL 82
G+++LP I + M + + G H EA IGL
Sbjct: 149 GTIRLPRLIGHSRAMDLILTGRPVHANEALDIGL 182
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.0 bits (64), Expect = 1.1
Identities = 20/115 (17%), Positives = 41/115 (35%), Gaps = 38/115 (33%)
Query: 5 QSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMK 64
Q+D L + SI ++ +E +KR ++ + D M+
Sbjct: 76 QADRLTQEPESIRKWREEQRKR-----LQ----------ELDAA-----------SKVME 109
Query: 65 VCMLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLAS--ESVI 117
+ E+A+K ++ + +++ KNK + K AF +I
Sbjct: 110 ------QEWREKAKKDLEEWNQRQS-EQVEKNKINNRIADK---AFYQQPDADII 154
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.1
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 8/36 (22%)
Query: 42 DPQKDKRFSGSVKLPHIP--RPKMKVCMLGDAQHVE 75
+ Q K+ S+KL + P + + A +E
Sbjct: 18 EKQALKKLQASLKL-YADDSAPALAI----KAT-ME 47
Score = 28.0 bits (61), Expect = 1.7
Identities = 13/46 (28%), Positives = 16/46 (34%), Gaps = 23/46 (50%)
Query: 78 EKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRL 123
EK + LKKL + KL Y A +S P L
Sbjct: 18 EK--------QALKKLQASLKL-------Y----ADDSA----PAL 40
>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 2.20A {Mycobacterium marinum}
Length = 265
Score = 28.7 bits (65), Expect = 1.4
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 51 GSVKLPH-IPRPK-MKVCMLGDAQHVEEAEKIGL 82
G ++LP IP M++ + GD E A +G+
Sbjct: 150 GLLRLPERIPYAIAMELALTGDNLSAERAHALGM 183
>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics
center for infectious DI niaid; 1.75A {Mycobacterium
marinum}
Length = 278
Score = 28.7 bits (65), Expect = 1.5
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 51 GSVKLPH-IPRPK-MKVCMLGDAQHVEEAEKIGL 82
+V+L IP + + G EA+++GL
Sbjct: 163 SAVRLVRQIPYTVACDLLLTGRHITAAEAKEMGL 196
>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious
DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium
avium subsp} PDB: 3r9s_A 3r0o_A
Length = 267
Score = 28.6 bits (65), Expect = 1.5
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 51 GSVKLPH-IPRPK-MKVCMLGDAQHVEEAEKIGL 82
G ++ +PR M++ + G+ A GL
Sbjct: 149 GVFRIAEQLPRKVAMRLLLTGEPLSAAAARDWGL 182
>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 2.09A {Mycobacterium abscessus}
Length = 256
Score = 28.6 bits (65), Expect = 1.5
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 51 GSVKLPH-IPRPK-MKVCMLGDAQHVEEAEKIGL 82
G ++LP+ IP M++ + G++ E+A K G
Sbjct: 141 GLLRLPNRIPYQVAMELALTGESFTAEDAAKYGF 174
>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus}
Length = 265
Score = 28.7 bits (65), Expect = 1.6
Identities = 6/34 (17%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 51 GSVKLPH-IPRPK-MKVCMLGDAQHVEEAEKIGL 82
LP + ++ + G + + A + GL
Sbjct: 146 AHWTLPRLVGTAVAAELLLTGASFSAQRAVETGL 179
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase
regulat protein complex; 3.10A {Simian virus 40} PDB:
2pkg_C
Length = 174
Score = 28.0 bits (62), Expect = 1.9
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Query: 83 DYMDVEGLKK-----LNKNKKLVKKLAKKYH 108
MD+ GL++ + +K K K++H
Sbjct: 12 QLMDLLGLERSAWGNIPLMRKAYLKKCKEFH 42
>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural
genomics, PSI-2, protein structure initiative; HET: MSE;
2.40A {Pseudomonas aeruginosa}
Length = 258
Score = 28.3 bits (64), Expect = 1.9
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 51 GSVKLPH-IPRPK-MKVCMLGDAQHVEEAEKIGL 82
+V+ P M+ + GD +EA ++ L
Sbjct: 153 STVRFPRAAGWTDAMRYILTGDEFDADEALRMRL 186
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein;
3.20A {Simian virus 40} SCOP: a.2.3.1
Length = 114
Score = 27.5 bits (61), Expect = 2.0
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Query: 83 DYMDVEGLKK-----LNKNKKLVKKLAKKYH 108
MD+ GL++ + +K K K++H
Sbjct: 9 QLMDLLGLERSAWGNIPLMRKAYLKKCKEFH 39
>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving,
burkholderia xenovorans LB400 crotonase; 1.50A
{Burkholderia xenovorans}
Length = 556
Score = 28.4 bits (63), Expect = 2.2
Identities = 13/105 (12%), Positives = 32/105 (30%), Gaps = 5/105 (4%)
Query: 63 MKVCMLGDAQHVEEAEKIGL-DYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIP 121
C + + E A+ L D + V+ + + +LA + + + + +
Sbjct: 196 DIFCTVVEGVRGERAKAWRLVDEV-VKPNQFDQAIQARALELAAQ--SDRPAHAQGVPLT 252
Query: 122 RLLGPGLNKAGKFPTLVTHQESLESKVNE-TKATVKFQLKKVLCM 165
R+ + TL + + KA + +
Sbjct: 253 RIERTDREDGLTYKTLDVTIDRAKRIATFTAKAPQTEPPASIDAI 297
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus,
hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Length = 677
Score = 28.4 bits (62), Expect = 2.4
Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 8/99 (8%)
Query: 105 KKYHA---FLASESVIKQIP-RLLGPG----LNKAGKFPTLVTHQESLESKVNETKATVK 156
K YHA + +++S + P +LL N AG LVT +E + + N +A+
Sbjct: 168 KTYHAIQKYFSAKSGVYCGPLKLLAHEIFEKSNAAGVPCDLVTGEERVTVQPNGKQASHV 227
Query: 157 FQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLK 195
++ + ++E Q+ ++ + +LL
Sbjct: 228 SCTVEMCSVTTPYEVAVIDEIQMIRDPARGWAWTRALLG 266
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR
{Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Length = 103
Score = 26.8 bits (60), Expect = 2.5
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 83 DYMDVEGLKKLNKN---KKLVKKLAKKYH 108
DY ++ G+ K + +K K+LA KYH
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYH 32
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics,
PSI-biology, protein STRU initiative; 1.90A {Bacillus
halodurans}
Length = 211
Score = 27.5 bits (62), Expect = 2.9
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 133 KFPTLVTHQESLESKVNETKATVKF 157
FP L ++++ + V T T+ +
Sbjct: 116 AFPGLHAIEQAIRANVKVTGVTIHY 140
>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2;
2.00A {Acinetobacter baumannii}
Length = 266
Score = 27.5 bits (62), Expect = 3.2
Identities = 10/58 (17%), Positives = 16/58 (27%), Gaps = 4/58 (6%)
Query: 51 GSVKLPH-IPRPK-MKVCMLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKK 106
S L K ++ + E A + GL VE + + L
Sbjct: 147 ASQLLVKQAGYHKAAELLFTAKKFNAETALQAGLVNEIVEDA--YATAQATAQHLTAL 202
>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics,
seattle structur genomics center for infectious disease,
ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB:
3p85_A* 3qyr_A
Length = 256
Score = 27.5 bits (62), Expect = 3.3
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 49 FSGSVKLPH-IPRPK-MKVCMLGDAQHVEEAEKIGL 82
+ SV+LP + ++ + GD ++A + GL
Sbjct: 138 WGLSVRLPQKVGVGLARRMSLTGDYLSAQDALRAGL 173
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.85A {Brucella melitensis BV}
Length = 209
Score = 27.5 bits (62), Expect = 3.4
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 133 KFPTLVTHQESLESKVNETKATVKF 157
FP L THQ +L++ + TV
Sbjct: 121 LFPGLHTHQRALDAGMKLAGCTVHL 145
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics,
riken structural genomics/proteomics in RSGI, rossmann
fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Length = 212
Score = 27.5 bits (62), Expect = 3.4
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 133 KFPTLVTHQESLESKVNETKATVKF 157
FP ++ + V+ET TV +
Sbjct: 117 AFPGKDAIGQAYRAGVSETGVTVHY 141
>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase
superfamily, dimer of trimers, PSI-2, NYSGXRC,
structural genomics; 2.32A {Ruegeria pomeroyi}
Length = 263
Score = 27.7 bits (62), Expect = 3.5
Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 6/60 (10%)
Query: 51 GSVKLP-HIPRPK-MKVCMLGDAQHVEEAEKIGL--DYMDVEGLKKLNKNKKLVKKLAKK 106
+V + I R ++ + G + A GL + L L LA +
Sbjct: 151 PAVAVSRVIGRRAVTEMALTGATYDADWALAAGLINRILPEAAL--ATHVADLAGALAAR 208
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 88
Score = 26.1 bits (58), Expect = 3.7
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 83 DYMDVEGLKKLNKN---KKLVKKLAKKYH 108
Y D+ G+ K KK KLA KYH
Sbjct: 8 SYYDILGVPKSASERQIKKAFHKLAMKYH 36
>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural
genomics center for infectious lyase; 1.55A
{Mycobacterium smegmatis}
Length = 286
Score = 27.2 bits (61), Expect = 3.8
Identities = 11/60 (18%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 51 GSVKLP-HIPRPK-MKVCMLGDAQHVEEAEKIGL--DYMDVEGLKKLNKNKKLVKKLAKK 106
V L ++ R ++ + G+ ++A+ +GL + + L ++ + +V K+ K
Sbjct: 166 PGVALSRNVGRKAAFEMLVTGEFVSADDAKGLGLVNRVVAPKAL--DDEIEAMVSKIVAK 223
>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 2.45A {Mycobacterium avium subsp}
Length = 276
Score = 27.2 bits (61), Expect = 4.1
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Query: 51 GSVKLP-HIPRPK-MKVCMLGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKK 106
G + P HI + + G + A ++GL + + + KK+ +
Sbjct: 170 GPLTWPLHISLLLAKEYALTGTRISAQRAVELGLANHVADDP--VAEAIACAKKILEL 225
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 25.7 bits (57), Expect = 4.2
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 83 DYMDVEGLKK---LNKNKKLVKKLAKKYH 108
DY + G+ + + KK +LAKKYH
Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYH 36
>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.00A {Mycobacterium abscessus}
Length = 265
Score = 27.1 bits (61), Expect = 4.3
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 49 FSGSVKLPH-IPRPK-MKVCMLGDAQHVEEAEKIGL 82
V+L IP K M++ + G+ EA GL
Sbjct: 148 AGSMVRLKRQIPYTKAMEMILTGEPLTAFEAYHFGL 183
>1h6h_A Neutrophil cytosol factor 4; PX domain; HET: PIB; 1.7A {Homo
sapiens} SCOP: d.189.1.1
Length = 143
Score = 26.5 bits (58), Expect = 4.5
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 5/62 (8%)
Query: 25 KRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLD- 83
R + + LQ L+ K + + LP +P +G Q + E L+
Sbjct: 55 YRRYRQFHALQSKLEERFGPDSKSSALACTLPTLPAKV----YVGVKQEIAEMRIPALNA 110
Query: 84 YM 85
YM
Sbjct: 111 YM 112
>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.10A {Mycobacterium abscessus}
Length = 265
Score = 27.1 bits (61), Expect = 4.5
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 51 GSVKLPH-IPRPK-MKVCMLGDAQHVEEAEKIGL 82
+++ P M+ + D EA +IG+
Sbjct: 150 ATIRFPRTAGWGNAMRWMLTADTFDAVEAHRIGI 183
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione
reductase, glutathione-dependent formaldehyde
dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo
sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A*
2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Length = 373
Score = 27.2 bits (61), Expect = 4.7
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 119 QIPRLLGPGLNKAGKFP--TLVTHQESLESKVNE 150
+P+L+ + K VTH S + ++N+
Sbjct: 326 SVPKLVS--EYMSKKIKVDEFVTHNLSFD-EINK 356
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines,
nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella
burnetii}
Length = 215
Score = 27.1 bits (61), Expect = 4.7
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 133 KFPTLVTHQESLESKVNETKATVKF 157
K+ L TH+ +L + E +V +
Sbjct: 118 KYTGLNTHERALAAGETEHGVSVHY 142
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold,
structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Length = 216
Score = 27.1 bits (61), Expect = 4.9
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 133 KFPTLVTHQESLESKVNETKATVKF 157
F L ++++E V + TV
Sbjct: 115 AFQGLHAQKQAVEFGVKFSGCTVHI 139
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics,
niaid, seattle structural center for infectious disease,
ssgcid; 2.20A {Anaplasma phagocytophilum}
Length = 215
Score = 26.7 bits (60), Expect = 5.1
Identities = 4/25 (16%), Positives = 11/25 (44%)
Query: 133 KFPTLVTHQESLESKVNETKATVKF 157
F L +++ ++ V T+ +
Sbjct: 117 SFKGLNAQEQAYKAGVKIAGCTLHY 141
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine
biosynthesis, anti-cancer agent; HET: 138; 1.60A
{Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A*
1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Length = 212
Score = 26.7 bits (60), Expect = 5.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 133 KFPTLVTHQESLESKVNETKATVKF 157
K+P L TH+++LE+ E +V F
Sbjct: 114 KYPGLHTHRQALENGDEEHGTSVHF 138
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis;
1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A*
1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A*
1mej_B 1men_A*
Length = 209
Score = 26.7 bits (60), Expect = 5.6
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 133 KFPTLVTHQESLESKVNETKATVKF 157
F H+++LE+ V T TV F
Sbjct: 114 SFKGSNAHEQALETGVTVTGCTVHF 138
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 78
Score = 25.3 bits (56), Expect = 5.8
Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 83 DYMDVEGLKKLNKN---KKLVKKLAKKYH 108
DY ++ G+ + + KK ++LA K+H
Sbjct: 8 DYYEILGVSRGASDEDLKKAYRRLALKFH 36
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural
genomics, PSI-2, protein structure initiative; 1.25A
{Saccharomyces cerevisiae}
Length = 92
Score = 25.4 bits (56), Expect = 6.3
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Query: 83 DYMDVEGLKK---LNKNKKLVKKLAKKYH 108
D+ G+ + KK +K A KYH
Sbjct: 9 KLYDLLGVSPSANEQELKKGYRKAALKYH 37
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics,
riken structural genomics/proteomics in RSGI, rossmann
fold; 2.07A {Symbiobacterium toebii}
Length = 229
Score = 26.8 bits (60), Expect = 6.5
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 133 KFPTLVTHQESLESKVNETKATVKF 157
FP L +++LE V TV F
Sbjct: 136 AFPGLEAQRQALEHGVKVAGCTVHF 160
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 77
Score = 25.2 bits (56), Expect = 7.1
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Query: 81 GLDYMDVEGLKKLNKN---KKLVKKLAKKYH 108
G DY GL + + K+ ++ A +YH
Sbjct: 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYH 32
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 26.4 bits (58), Expect = 7.1
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 83 DYMDVEGLKK---LNKNKKLVKKLAKKYH 108
++ + G+ K + ++ KKLA K H
Sbjct: 3 NFYSLLGVSKTASSREIRQAFKKLALKLH 31
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology,
NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana
perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Length = 373
Score = 26.8 bits (60), Expect = 7.3
Identities = 7/33 (21%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 118 KQIPRLLGPGLNKAGKFPTLVTHQESLESKVNE 150
+++ RL+ + K LV+ + +L+ ++N+
Sbjct: 325 EEVSRLVDDYMKKKINVNFLVSTKLTLD-QINK 356
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 112
Score = 25.5 bits (56), Expect = 7.6
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 3/29 (10%)
Query: 83 DYMDVEGLKKLNKN---KKLVKKLAKKYH 108
DY + G +L+ K A + H
Sbjct: 21 DYYTLLGCDELSSVEQILAEFKVRALECH 49
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural
genomics, PSI-2, Pro structure initiative; 1.68A
{Caenorhabditis elegans}
Length = 109
Score = 25.5 bits (56), Expect = 8.2
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 83 DYMDVEGLKKLNKN----KKLVKKLAKKYH 108
+ DV + + + K + LA+K+H
Sbjct: 16 NCYDVLEVNREEFDKQKLAKAYRALARKHH 45
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN;
glycinamide ribonucleotide transformylase, structure;
1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Length = 215
Score = 26.3 bits (59), Expect = 8.5
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 133 KFPTLVTHQESLESKVNETKATVKF 157
FP ++L V T ATV
Sbjct: 124 AFPGTHGVADALAYGVKVTGATVHL 148
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 109
Score = 25.4 bits (56), Expect = 8.6
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Query: 81 GLDYMDVEGLKKLNKN---KKLVKKLAKKYH 108
G V GL K + KK +KLA KYH
Sbjct: 16 GESLYHVLGLDKNATSDDIKKSYRKLALKYH 46
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase,
2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A
{Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Length = 328
Score = 26.1 bits (58), Expect = 9.4
Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 49 FSGSVKLPHIPRPK---MKV-CMLGDAQHVEEAEKIGLDYMDVEG 89
+G+ HI + +KV +H +AE++G+D + ++G
Sbjct: 102 TAGNDPGEHIAEFRRHGVKVIHKCTAVRHALKAERLGVDAVSIDG 146
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular
chaperone, NPPSFA; NMR {Mus musculus}
Length = 88
Score = 25.0 bits (55), Expect = 10.0
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 83 DYMDVEGLKKLNKN---KKLVKKLAKKYH 108
D V G+ + KK KKLA+++H
Sbjct: 18 DPYRVLGVSRTASQADIKKAYKKLAREWH 46
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.131 0.369
Gapped
Lambda K H
0.267 0.0736 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,179,235
Number of extensions: 174601
Number of successful extensions: 528
Number of sequences better than 10.0: 1
Number of HSP's gapped: 516
Number of HSP's successfully gapped: 87
Length of query: 229
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 139
Effective length of database: 4,188,903
Effective search space: 582257517
Effective search space used: 582257517
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.3 bits)