RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 027063
(229 letters)
>d1i2aa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Methanococcus
jannaschii [TaxId: 2190]}
Length = 212
Score = 132 bits (334), Expect = 3e-39
Identities = 58/194 (29%), Positives = 100/194 (51%), Gaps = 2/194 (1%)
Query: 10 REAVSSIVQYSKET-KKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCM 67
REA+ V+ ++E K RNFT++ E LK D +K + R V LPH + K+ +
Sbjct: 3 REALLQAVKEARELAKPRNFTQSFEFIATLKEIDMRKPENRIKTEVVLPHGRGKEAKIAV 62
Query: 68 LGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPG 127
+G ++AE++GL + E +++L KNK+ ++K+AK + F+A ++ I R +G
Sbjct: 63 IGTGDLAKQAEELGLTVIRKEEIEELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMGVI 122
Query: 128 LNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSV 187
L GK P V +++ V K TV + V VGN M ++QI N++ +
Sbjct: 123 LGPRGKMPKPVPANANIKPLVERLKKTVVINTRDKPYFQVLVGNEKMTDEQIVDNIEAVL 182
Query: 188 NFLVSLLKKNWQNV 201
N + +K ++
Sbjct: 183 NVVAKKYEKGLYHI 196
>d1mzpa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 217
Score = 132 bits (332), Expect = 6e-39
Identities = 54/197 (27%), Positives = 99/197 (50%), Gaps = 4/197 (2%)
Query: 7 DALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKV 65
++L EA+ + ++ KRNFT+++E+ + K D +K D + V LP P +V
Sbjct: 6 ESLIEALK-LALSTEYNVKRNFTQSVEIILTFKGIDMKKGDLKLREIVPLPKQPSKAKRV 64
Query: 66 CMLGDAQHVEEAEKIGLD-YMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLL 124
++ ++ +E A+K + E L+KL K+ VKKLA++ FL ++ + R+L
Sbjct: 65 LVVPSSEQLEYAKKASPKVVITREELQKLQGQKRPVKKLARQNEWFLINQESMALAGRIL 124
Query: 125 GPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQ 184
GP L GKFPT + + + +N K +V + K + V +G M+ + + +N
Sbjct: 125 GPALGPRGKFPTPLPNTADISEYINRFKRSVLVKTKDQPQVQVFIGTEDMKPEDLAENAI 184
Query: 185 MSVNFLVSLLKKNWQNV 201
+N + + K N+
Sbjct: 185 AVLNAIENKAKV-ETNL 200
>d1ad2a_ e.24.1.1 (A:) Ribosomal protein L1 {Thermus thermophilus
[TaxId: 274]}
Length = 224
Score = 97.4 bits (242), Expect = 1e-25
Identities = 39/193 (20%), Positives = 78/193 (40%), Gaps = 9/193 (4%)
Query: 12 AVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDA 71
+ KE F ET+E+ L + D+ G+V LPH +++V +
Sbjct: 17 TIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKG 76
Query: 72 QHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKA 131
+ ++EAE+ G DY+ E + + + + A +A+ V+ + LG L
Sbjct: 77 EKIKEAEEAGADYVGGEEIIQKILDGW------MDFDAVVATPDVMGAVGSKLGRILGPR 130
Query: 132 GKFPTLV--THQESLESKVNETKA-TVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVN 188
G P T ++ + E KA ++F+ K + VG +++ N++ +
Sbjct: 131 GLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKACFPPEKLADNIRAFIR 190
Query: 189 FLVSLLKKNWQNV 201
L + + +
Sbjct: 191 ALEAHKPEGAKGT 203
>d1d2za_ a.77.1.2 (A:) Pelle death domain {Drosophila melanogaster
[TaxId: 7227]}
Length = 102
Score = 25.3 bits (55), Expect = 3.0
Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 52 SVKLPHIPRPKM-KVCMLGDAQHV--EEAEKIGLDYMDVEGLKKLNKNKK 98
++ + +P P ++C DA V + A + L VE + + +
Sbjct: 4 TMAIRLLPLPVRAQLCAHLDALDVWQQLATAVKLYPDQVEQISSQKQRGR 53
>d1v5xa_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase,
PRAI {Thermus thermophilus [TaxId: 274]}
Length = 200
Score = 24.8 bits (53), Expect = 7.3
Identities = 5/24 (20%), Positives = 12/24 (50%)
Query: 62 KMKVCMLGDAQHVEEAEKIGLDYM 85
++K+C + + AE +G +
Sbjct: 2 RVKICGITRLEDALLAEALGAFAL 25
>d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS
{Thermus thermophilus [TaxId: 274]}
Length = 254
Score = 25.0 bits (54), Expect = 7.3
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 6/37 (16%)
Query: 95 KNKKLVKKLAKKYHAFLASESVIKQ------IPRLLG 125
K+ +K L + A L S+++ + L+G
Sbjct: 218 SRKEELKALEGLFDAVLIGTSLMRAPDLEAALRELVG 254
>d1qh4a1 a.83.1.1 (A:2-102) Creatine kinase, N-domain {Chicken
(Gallus gallus), brain-type [TaxId: 9031]}
Length = 101
Score = 24.3 bits (53), Expect = 7.9
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 202 PLSEEYHGSFKP 213
P+ E+ HG +KP
Sbjct: 90 PVIEDRHGGYKP 101
>d1m15a2 d.128.1.2 (A:96-357) Arginine kinase, C-terminal domain
{Horseshoe crab (Limulus polyphemus) [TaxId: 6850]}
Length = 262
Score = 24.9 bits (54), Expect = 8.2
Identities = 13/89 (14%), Positives = 31/89 (34%), Gaps = 24/89 (26%)
Query: 121 PRLLGPGLNKAG---KFPTLVTHQESLESKVNETKATVK-------------FQLKKVLC 164
P LG + +A + P L ++ LE ++ V+ + +
Sbjct: 177 PTNLGTTM-RASVHIQLPKLAKDRKVLEDIASKFNLQVRGTRGEHTESEGGVYDISNKRR 235
Query: 165 MGVAVGNLSMEEKQIFQNVQMSVNFLVSL 193
+G+ E Q + +Q + ++ +
Sbjct: 236 LGLT-------EYQAVREMQDGILEMIKM 257
>d1p99a_ c.94.1.1 (A:) Putative lipoprotein (NlpA family)
{Staphylococcus aureus [TaxId: 1280]}
Length = 255
Score = 24.7 bits (53), Expect = 9.8
Identities = 9/53 (16%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 69 GDAQHVEEAEKIGLD-YMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQI 120
D +E++ + Y+++ + + + K K+ + YH S+ K +
Sbjct: 181 NDPIFLEKSNSDAVKPYINIVAVNDKDLDNKTYAKIVELYH----SKEAQKAL 229
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.131 0.369
Gapped
Lambda K H
0.267 0.0416 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 774,919
Number of extensions: 34499
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 20
Length of query: 229
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 147
Effective length of database: 1,281,736
Effective search space: 188415192
Effective search space used: 188415192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.2 bits)