BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027064
(229 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A26|A Chain A, The Crystal Structure Of Leishmania Major N5,N10-
Methylenetetrahydrofolate DehydrogenaseCYCLOHYDROLASE
pdb|4A26|B Chain B, The Crystal Structure Of Leishmania Major N5,N10-
Methylenetetrahydrofolate DehydrogenaseCYCLOHYDROLASE
Length = 300
Score = 233 bits (593), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 122/215 (56%), Positives = 156/215 (72%), Gaps = 3/215 (1%)
Query: 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYG-KVPGLAVVIVGGRKDSQSYVSMKRKACAEV 67
A IIDGKA+A IRSE+ ++V L E YG +VPGLA +IVG R DS+ YV +K KA AEV
Sbjct: 6 AQIIDGKAIAAAIRSELKDKVAALRELYGGRVPGLASIIVGQRMDSKKYVQLKHKAAAEV 65
Query: 68 GIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVD 127
G+ SF+++LPE +S+ L V +LN P+ HGI+VQLPLPKH+NE + + +I KD D
Sbjct: 66 GMASFNVELPEDISQEVLEVNVEKLNNDPNCHGIIVQLPLPKHLNENRAIEKIHPHKDAD 125
Query: 128 GFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLL 187
P+N+G L KGR+P F PCT KG + LLKR G+ + GKRAVV+GRSNIVG PV+ LL
Sbjct: 126 ALLPVNVGLLHYKGREPPFTPCTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAALL 185
Query: 188 LKADATVTIVHSHTTDPESI--VREADIVIAAAGQ 220
+K +ATVTIVHS T+ + I +R ADIVIAA GQ
Sbjct: 186 MKENATVTIVHSGTSTEDMIDYLRTADIVIAAMGQ 220
>pdb|4A5O|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
pdb|4A5O|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
pdb|4A5O|C Chain C, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
pdb|4A5O|D Chain D, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
Length = 286
Score = 192 bits (488), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 105/216 (48%), Positives = 138/216 (63%), Gaps = 2/216 (0%)
Query: 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
A +IDGKA+A +R +IA+ V ++ +VPGLAV++VG SQ YV+ KRK C EVG
Sbjct: 5 AQLIDGKAIAANLRQQIAQRVTERRQQGLRVPGLAVILVGTDPASQVYVAHKRKDCEEVG 64
Query: 69 IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
S DLP + S+ +L++ + LN P + GILVQLPLP H++ +L I +KDVDG
Sbjct: 65 FLSQAYDLPAETSQDDLLALIDRLNDDPAIDGILVQLPLPAHLDASLLLERIHPDKDVDG 124
Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
FHP NIG+LA R PL PCTPKG + LL +G + G AVVVG SNIVG P++L LL
Sbjct: 125 FHPYNIGRLAQ--RMPLLRPCTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMALELL 182
Query: 189 KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMV 224
TVT+ H T D V AD+V+ AAG+ +V
Sbjct: 183 LGGCTVTVTHRFTRDLADHVSRADLVVVAAGKPGLV 218
>pdb|3L07|A Chain A, Methylenetetrahydrofolate
DehydrogenaseMETHENYLTETRAHYDROFOLATE Cyclohydrolase,
Putative Bifunctional Protein Fold From Francisella
Tularensis.
pdb|3L07|B Chain B, Methylenetetrahydrofolate
DehydrogenaseMETHENYLTETRAHYDROFOLATE Cyclohydrolase,
Putative Bifunctional Protein Fold From Francisella
Tularensis
Length = 285
Score = 191 bits (486), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 100/215 (46%), Positives = 138/215 (64%), Gaps = 1/215 (0%)
Query: 11 IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIK 70
+IDGK++++ ++ +A +V+ P L +IVG S++YV+ K KACA+VGI
Sbjct: 6 LIDGKSLSKDLKERLATQVQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQVGID 65
Query: 71 SFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFH 130
S I LPE +E+EL+ + +LN VH ILVQLPLP HIN+ V+ I EKDVDGFH
Sbjct: 66 SQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDGFH 125
Query: 131 PLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKA 190
P N+G+L ++ + L CTPKG + +L+ G+ +G AVVVG SN+VG PVS LLL A
Sbjct: 126 PTNVGRLQLRDKKCLE-SCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNA 184
Query: 191 DATVTIVHSHTTDPESIVREADIVIAAAGQAMMVT 225
ATVT H TTD +S +ADI+I A G+ +T
Sbjct: 185 KATVTTCHRFTTDLKSHTTKADILIVAVGKPNFIT 219
>pdb|1B0A|A Chain A, 5,10, Methylene-Tetrahydropholate
DehydrogenaseCYCLOHYDROLASE FROM E COLI
Length = 288
Score = 191 bits (486), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 105/212 (49%), Positives = 133/212 (62%), Gaps = 2/212 (0%)
Query: 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
A IIDGK +AQ +RSE+A++V+ + PGLAVV+VG SQ YV+ KRKAC EVG
Sbjct: 3 AKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVG 62
Query: 69 IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
S DLPE SEAEL+ + LN + GILVQLPLP I+ KVL I +KDVDG
Sbjct: 63 FVSRSYDLPETTSEAELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDG 122
Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
FHP N+G+L R P PCTP+G + LL+R + G AVV+G SNIVG P+S+ LL
Sbjct: 123 FHPYNVGRLCQ--RAPRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELL 180
Query: 189 KADATVTIVHSHTTDPESIVREADIVIAAAGQ 220
A T T+ H T + V AD++I A G+
Sbjct: 181 LAGCTTTVTHRFTKNLRHHVENADLLIVAVGK 212
>pdb|1DIA|A Chain A, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly249543
pdb|1DIA|B Chain B, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly249543
pdb|1DIB|A Chain A, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly345899
pdb|1DIB|B Chain B, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly345899
pdb|1DIG|A Chain A, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly374571
pdb|1DIG|B Chain B, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly374571
Length = 306
Score = 184 bits (468), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 102/219 (46%), Positives = 138/219 (63%), Gaps = 3/219 (1%)
Query: 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKY-GKVPGLAVVIVGGRKDSQSYVSMKRKACAEV 67
A I++GK ++ IR+ + +V L E+ G P LA++ VG R DS Y+++K KA E+
Sbjct: 4 AEILNGKEISAQIRARLKNQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAAEEI 63
Query: 68 GIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPL--PKHINEEKVLGEISLEKD 125
GIK+ I LP +E+E++ + LN VHG LVQLPL IN E+V+ I+ EKD
Sbjct: 64 GIKATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPEKD 123
Query: 126 VDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSL 185
VDG +N G+LA + F+PCTPKGCLEL+K +GV I G+ AVVVGRS IVG P+
Sbjct: 124 VDGLTSINAGRLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHD 183
Query: 186 LLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMV 224
LLL +ATVT HS T + V + DI++ A GQ MV
Sbjct: 184 LLLWNNATVTTCHSKTAHLDEEVNKGDILVVATGQPEMV 222
>pdb|1A4I|A Chain A, Human Tetrahydrofolate Dehydrogenase CYCLOHYDROLASE
pdb|1A4I|B Chain B, Human Tetrahydrofolate Dehydrogenase CYCLOHYDROLASE
Length = 301
Score = 184 bits (468), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 102/219 (46%), Positives = 138/219 (63%), Gaps = 3/219 (1%)
Query: 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKY-GKVPGLAVVIVGGRKDSQSYVSMKRKACAEV 67
A I++GK ++ IR+ + +V L E+ G P LA++ VG R DS Y+++K KA E+
Sbjct: 4 AEILNGKEISAQIRARLKNQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAAEEI 63
Query: 68 GIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPL--PKHINEEKVLGEISLEKD 125
GIK+ I LP +E+E++ + LN VHG LVQLPL IN E+V+ I+ EKD
Sbjct: 64 GIKATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPEKD 123
Query: 126 VDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSL 185
VDG +N G+LA + F+PCTPKGCLEL+K +GV I G+ AVVVGRS IVG P+
Sbjct: 124 VDGLTSINAGRLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHD 183
Query: 186 LLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMV 224
LLL +ATVT HS T + V + DI++ A GQ MV
Sbjct: 184 LLLWNNATVTTCHSKTAHLDEEVNKGDILVVATGQPEMV 222
>pdb|3P2O|A Chain A, Crystal Structure Of Fold Bifunctional Protein From
Campylobacter Jejuni
pdb|3P2O|B Chain B, Crystal Structure Of Fold Bifunctional Protein From
Campylobacter Jejuni
Length = 285
Score = 182 bits (461), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 99/210 (47%), Positives = 136/210 (64%), Gaps = 2/210 (0%)
Query: 10 TIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGI 69
T++DGKA++ I+ E+ E+ + L K G LAV++VG SQ+YV K KAC E GI
Sbjct: 5 TLLDGKALSAKIKEELKEKNQFLKSK-GIESCLAVILVGDNPASQTYVKSKAKACEECGI 63
Query: 70 KSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGF 129
KS L E +++ EL++ ++ LN VHGILVQLPLP HI ++ +L I KDVDGF
Sbjct: 64 KSLVYHLNENITQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISSKDVDGF 123
Query: 130 HPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLK 189
HP+N+G L + G + FLPCTP G +LLK + ++GK AV++G SNIVG P + LL
Sbjct: 124 HPINVGYLNL-GLESGFLPCTPLGVXKLLKAYEIDLEGKDAVIIGASNIVGRPXATXLLN 182
Query: 190 ADATVTIVHSHTTDPESIVREADIVIAAAG 219
A ATV++ H T D R+AD++I AAG
Sbjct: 183 AGATVSVCHIKTKDLSLYTRQADLIIVAAG 212
>pdb|4B4U|A Chain A, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor
pdb|4B4U|B Chain B, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor
pdb|4B4V|A Chain A, Crystal Structure Of Acinetobacter Baumannii N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold) Complexed With Nadp Cofactor And Inhibitor
Ly354899
pdb|4B4V|B Chain B, Crystal Structure Of Acinetobacter Baumannii N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold) Complexed With Nadp Cofactor And Inhibitor
Ly354899
pdb|4B4W|A Chain A, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor And An Inhibitor
pdb|4B4W|B Chain B, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor And An Inhibitor
Length = 303
Score = 180 bits (456), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 139/216 (64%), Gaps = 2/216 (0%)
Query: 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
A ++DG+A+A+ I + V L K G+ P LA ++VG S +YV MK AC VG
Sbjct: 23 ALVLDGRALAKQIEENLLVRVEALKAKTGRTPILATILVGDDGASATYVRMKGNACRRVG 82
Query: 69 IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
+ S I+LP++ + +L++++ +LN PDVHGIL+Q P+P I+E ISL KDVDG
Sbjct: 83 MDSLKIELPQETTTEQLLAEIEKLNANPDVHGILLQHPVPAQIDERACFDAISLAKDVDG 142
Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
L G++AM + + TP G + +LK + + I GK AVVVGRS I+G P++++LL
Sbjct: 143 VTCLGFGRMAMG--EAAYGSATPAGIMTILKENNIEIAGKHAVVVGRSAILGKPMAMMLL 200
Query: 189 KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMV 224
+A+ATVTI HS T + +V++ADI++ A G+A ++
Sbjct: 201 QANATVTICHSRTQNLPELVKQADIIVGAVGKAELI 236
>pdb|2C2X|A Chain A, Three Dimensional Structure Of Bifunctional
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
From Mycobacterium Tuberculosis
pdb|2C2X|B Chain B, Three Dimensional Structure Of Bifunctional
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
From Mycobacterium Tuberculosis
pdb|2C2Y|A Chain A, Three Dimensional Structure Of Bifunctional
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
From Mycobacterium Tuberculosis
Length = 281
Score = 177 bits (448), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 132/219 (60%), Gaps = 5/219 (2%)
Query: 9 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
A ++DGKA I ++ + V L + G+ PGL ++VG SQ+YV K CA+VG
Sbjct: 3 AIMLDGKATRDEIFGDLKQRVAAL-DAAGRTPGLGTILVGDDPGSQAYVRGKHADCAKVG 61
Query: 69 IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
I S DLP +S A L + ELN PD G +VQLPLPKH++E L + KD DG
Sbjct: 62 ITSIRRDLPADISTATLNETIDELNANPDCTGYIVQLPLPKHLDENAALERVDPAKDADG 121
Query: 129 FHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLL 188
HP N+G+L + P LPCTP+G + LL+R ++I G VV+GR VG P+ LLL
Sbjct: 122 LHPTNLGRLVLG--TPAPLPCTPRGIVHLLRRYDISIAGAHVVVIGRGVTVGRPLGLLLT 179
Query: 189 K--ADATVTIVHSHTTDPESIVREADIVIAAAGQAMMVT 225
+ +ATVT+ H+ T D ++ R+ADIV+AA G A ++T
Sbjct: 180 RRSENATVTLCHTGTRDLPALTRQADIVVAAVGVAHLLT 218
>pdb|3NGL|A Chain A, Crystal Structure Of Bifunctional
5,10-Methylenetetrahydrofolate Dehydrogenase
CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM
pdb|3NGL|C Chain C, Crystal Structure Of Bifunctional
5,10-Methylenetetrahydrofolate Dehydrogenase
CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM
pdb|3NGX|A Chain A, Crystal Structure Of Bifunctional
5,10-Methylenetetrahydrofolate Dehydrogenase
CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM
pdb|3NGX|B Chain B, Crystal Structure Of Bifunctional
5,10-Methylenetetrahydrofolate Dehydrogenase
CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM
Length = 276
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 109/203 (53%), Gaps = 5/203 (2%)
Query: 18 AQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLP 77
+ I + AE + + E+ G P L ++ +G + + Y K + ++GI + D++
Sbjct: 6 GEEIAEKKAENLHGIIERSGLEPSLKLIQIGDNEAASIYARAKIRRGKKIGI-AVDLEKY 64
Query: 78 EQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKL 137
+ +S +L+ ++ +L P ++GI+++ PLPK + +++ I KDVD P N G +
Sbjct: 65 DDISMKDLLKRIDDLAKDPQINGIMIENPLPKGFDYYEIVRNIPYYKDVDALSPYNQGLI 124
Query: 138 AMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIV 197
A+ +P TP+ ++++ G +V RS +VG P+S++LL + TV++
Sbjct: 125 ALNRE--FLVPATPRAVIDIMDYYGY--HENTVTIVNRSPVVGRPLSMMLLNRNYTVSVC 180
Query: 198 HSHTTDPESIVREADIVIAAAGQ 220
HS T D S+ R + IV+ A G+
Sbjct: 181 HSKTKDIGSMTRSSKIVVVAVGR 203
>pdb|1EDZ|A Chain A, Structure Of The Nad-Dependent 5,10-
Methylenetetrahydrofolate Dehydrogenase From
Saccharomyces Cerevisiae
pdb|1EE9|A Chain A, Crystal Structure Of The Nad-Dependent 5,10-
Methylenetetrahydrofolate Dehydrogenase From
Saccharomyces Cerevisiae Complexed With Nad
Length = 320
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 94/205 (45%), Gaps = 21/205 (10%)
Query: 10 TIIDGKAVAQTIRSEIAEEVRLLSEKY-GKVPGLAVVIVGGRKDSQSYVSMKRKACAEVG 68
TI+ K VA+T +EI V + + G+ P L + ++ Y + +K +G
Sbjct: 7 TILASK-VAETFNTEIINNVEEYKKTHNGQGPLLVGFLANNDPAAKMYATWTQKTSESMG 65
Query: 69 IKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDG 128
+ +D+ + E E + + N V+GI+V P+ + ++ + + EKDV+G
Sbjct: 66 FR-YDLRVIEDKDFLE--EAIIQANGDDSVNGIMVYFPVFGNAQDQYLQQVVCKEKDVEG 122
Query: 129 FHPL-------NIGKLAMKGRDPLFLPCTPKGC---LELLK------RSGVTIKGKRAVV 172
+ + N+ L + R LPCTP LE LK G + GK+ +V
Sbjct: 123 LNHVYYQNLYHNVRYLDKENRLKSILPCTPLAIVKILEFLKIYNNLLPEGNRLYGKKCIV 182
Query: 173 VGRSNIVGLPVSLLLLKADATVTIV 197
+ RS IVG P++ LL ATV V
Sbjct: 183 INRSEIVGRPLAALLANDGATVYSV 207
>pdb|2YZ7|A Chain A, X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase From
Alcaligenes Faecalis
pdb|2YZ7|B Chain B, X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase From
Alcaligenes Faecalis
pdb|2YZ7|C Chain C, X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase From
Alcaligenes Faecalis
pdb|2YZ7|D Chain D, X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase From
Alcaligenes Faecalis
pdb|2YZ7|E Chain E, X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase From
Alcaligenes Faecalis
pdb|2YZ7|F Chain F, X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase From
Alcaligenes Faecalis
pdb|2YZ7|G Chain G, X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase From
Alcaligenes Faecalis
pdb|2YZ7|H Chain H, X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase From
Alcaligenes Faecalis
pdb|3VDR|A Chain A, Crystal Structure Of D-3-Hydroxybutyrate Dehydrogenase,
Prepared In The Presence Of The Substrate
D-3-Hydroxybutyrate And Nad(+)
pdb|3VDR|B Chain B, Crystal Structure Of D-3-Hydroxybutyrate Dehydrogenase,
Prepared In The Presence Of The Substrate
D-3-Hydroxybutyrate And Nad(+)
pdb|3VDR|C Chain C, Crystal Structure Of D-3-Hydroxybutyrate Dehydrogenase,
Prepared In The Presence Of The Substrate
D-3-Hydroxybutyrate And Nad(+)
pdb|3VDR|D Chain D, Crystal Structure Of D-3-Hydroxybutyrate Dehydrogenase,
Prepared In The Presence Of The Substrate
D-3-Hydroxybutyrate And Nad(+)
pdb|3VDQ|A Chain A, Crystal Structure Of Alcaligenes Faecalis
D-3-Hydroxybutyrate Dehydrogenase In Complex With Nad(+)
And Acetate
pdb|3VDQ|B Chain B, Crystal Structure Of Alcaligenes Faecalis
D-3-Hydroxybutyrate Dehydrogenase In Complex With Nad(+)
And Acetate
pdb|3VDQ|C Chain C, Crystal Structure Of Alcaligenes Faecalis
D-3-Hydroxybutyrate Dehydrogenase In Complex With Nad(+)
And Acetate
pdb|3VDQ|D Chain D, Crystal Structure Of Alcaligenes Faecalis
D-3-Hydroxybutyrate Dehydrogenase In Complex With Nad(+)
And Acetate
Length = 260
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVRE 210
+KGK+AVV G ++ +GL ++ L KA A V I + PE I RE
Sbjct: 2 LKGKKAVVTGSTSGIGLAMATELAKAGADVVI--NGFGQPEDIERE 45
>pdb|3PPH|A Chain A, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Threonine Variant
pdb|3PPH|B Chain B, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Threonine Variant
Length = 789
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 44 VVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHE-LNVMP 96
V I +KD +Y+ + +G+ FDI P S+ E +S++ E L V P
Sbjct: 698 VSIEFSKKDDPNYIQEFSEYPNHIGLGLFDIHSPRIPSKQEFVSRIEEILKVYP 751
>pdb|3PPF|A Chain A, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Alanine Variant
Without Zinc
pdb|3PPG|A Chain A, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Alanine Variant
With Zinc
Length = 789
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 44 VVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHE-LNVMP 96
V I +KD +Y+ + +G+ FDI P S+ E +S++ E L V P
Sbjct: 698 VSIEFSKKDDPNYIQEFSEYPNHIGLGLFDIHSPRIPSKQEFVSRIEEILKVYP 751
>pdb|3PPC|A Chain A, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Tyrosine Variant
With Zinc
pdb|3PPC|B Chain B, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Tyrosine Variant
With Zinc
Length = 789
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 44 VVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHE-LNVMP 96
V I +KD +Y+ + +G+ FDI P S+ E +S++ E L V P
Sbjct: 698 VSIEFSKKDDPNYIQEFSEYPNHIGLGLFDIHSPRIPSKQEFVSRIEEILKVYP 751
>pdb|1WIH|A Chain A, Solution Structure Of Rsgi Ruh-021, A Domain Ii Of
Ribosome Recycling Factor From Mouse Cdna
Length = 84
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 57 VSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNVMPDVHGILVQLPLPK 109
+SMK V + SF PE + A + +N+ P+V G L+++P+PK
Sbjct: 28 ISMKSPQVILVNMASF----PECTAAAIKAIRESGMNLNPEVEGTLIRVPIPK 76
>pdb|4ASI|A Chain A, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|B Chain B, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|C Chain C, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|D Chain D, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|E Chain E, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|F Chain F, Crystal Structure Of Human Acaca C-Terminal Domain
Length = 769
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 153 GCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREAD 212
G + S + + VVVGR+ + G+PV ++ ++ T T+ S DP ++ EA
Sbjct: 384 GFFDYGSFSEIMQPWAQTVVVGRARLGGIPVGVVAVE---TRTVELSIPADPANLDSEAK 440
Query: 213 IVIAAAGQAMM 223
I I AGQ
Sbjct: 441 I-IQQAGQVWF 450
>pdb|3E4A|A Chain A, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|3E4A|B Chain B, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|2WK3|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
pdb|2WK3|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
Length = 1019
Score = 28.1 bits (61), Expect = 4.4, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 42 LAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDI-DLPEQVSEAELISKVHELNVMPDVHG 100
L V+V GR+ ++ K +EV K+ + + PE + E + +++++ + D+
Sbjct: 253 LMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLKQLYKIVPIKDIRN 312
Query: 101 ILVQLPLP 108
+ V P+P
Sbjct: 313 LYVTFPIP 320
>pdb|1V0Z|A Chain A, Structure Of Neuraminidase From English Duck Subtype N6
pdb|1V0Z|B Chain B, Structure Of Neuraminidase From English Duck Subtype N6
pdb|1V0Z|C Chain C, Structure Of Neuraminidase From English Duck Subtype N6
pdb|1V0Z|D Chain D, Structure Of Neuraminidase From English Duck Subtype N6
pdb|1W1X|A Chain A, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Sialic Acid (Nana, Neu5ac), Crystal
Soaked For 3 Hours At 277 K.
pdb|1W1X|B Chain B, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Sialic Acid (Nana, Neu5ac), Crystal
Soaked For 3 Hours At 277 K.
pdb|1W1X|C Chain C, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Sialic Acid (Nana, Neu5ac), Crystal
Soaked For 3 Hours At 277 K.
pdb|1W1X|D Chain D, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Sialic Acid (Nana, Neu5ac), Crystal
Soaked For 3 Hours At 277 K.
pdb|1W20|A Chain A, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Sialic Acid (Nana, Neu5ac), Crystal
Soaked For 3 Hours At 291 K
pdb|1W20|B Chain B, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Sialic Acid (Nana, Neu5ac), Crystal
Soaked For 3 Hours At 291 K
pdb|1W20|C Chain C, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Sialic Acid (Nana, Neu5ac), Crystal
Soaked For 3 Hours At 291 K
pdb|1W20|D Chain D, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Sialic Acid (Nana, Neu5ac), Crystal
Soaked For 3 Hours At 291 K
pdb|1W21|A Chain A, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Sialic Acid (Nana, Neu5ac), Crystal
Soaked For 43 Hours At 291 K.
pdb|1W21|B Chain B, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Sialic Acid (Nana, Neu5ac), Crystal
Soaked For 43 Hours At 291 K.
pdb|1W21|C Chain C, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Sialic Acid (Nana, Neu5ac), Crystal
Soaked For 43 Hours At 291 K.
pdb|1W21|D Chain D, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Sialic Acid (Nana, Neu5ac), Crystal
Soaked For 43 Hours At 291 K.
pdb|2CML|A Chain A, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Zanamivir, Crystal Soaked For 3
Hours At 291 K.
pdb|2CML|B Chain B, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Zanamivir, Crystal Soaked For 3
Hours At 291 K.
pdb|2CML|C Chain C, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Zanamivir, Crystal Soaked For 3
Hours At 291 K.
pdb|2CML|D Chain D, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Zanamivir, Crystal Soaked For 3
Hours At 291 K
Length = 389
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 142 RDPLFLPCTPKGCLELLKRSGVTIKGKRA 170
R+P +L C P+GC G T++G+ A
Sbjct: 37 REP-YLSCDPQGCRMFALSQGTTLRGRHA 64
>pdb|3HGZ|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|3HGZ|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
Length = 969
Score = 28.1 bits (61), Expect = 4.6, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 42 LAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDI-DLPEQVSEAELISKVHELNVMPDVHG 100
L V+V GR+ ++ K +EV K+ + + PE + E + +++++ + D+
Sbjct: 211 LMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLKQLYKIVPIKDIRN 270
Query: 101 ILVQLPLP 108
+ V P+P
Sbjct: 271 LYVTFPIP 278
>pdb|3TV5|A Chain A, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 1
pdb|3TV5|B Chain B, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 1
pdb|3TV5|C Chain C, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 1
pdb|3TVU|A Chain A, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 3
pdb|3TVU|B Chain B, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 3
pdb|3TVU|C Chain C, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 3
pdb|3TVW|A Chain A, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 4
pdb|3TVW|B Chain B, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 4
pdb|3TVW|C Chain C, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 4
pdb|3TZ3|A Chain A, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 2
pdb|3TZ3|B Chain B, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 2
pdb|3TZ3|C Chain C, Crystal Structure Of The Humanized Carboxyltransferase
Domain Of Yeast Acetyl-Coa Caroxylase In Complex With
Compound 2
Length = 769
Score = 28.1 bits (61), Expect = 4.6, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 169 RAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQ 220
+ VVVGR+ + G+P+ ++ ++ ++ + +P S A+ +I AGQ
Sbjct: 403 KGVVVGRARLGGIPLGVIGVETRTVENLIPADPANPNS----AETLIQQAGQ 450
>pdb|3QZ2|A Chain A, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|3QZ2|B Chain B, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|4DTT|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
pdb|4DTT|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
Length = 990
Score = 28.1 bits (61), Expect = 4.6, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 42 LAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDI-DLPEQVSEAELISKVHELNVMPDVHG 100
L V+V GR+ ++ K +EV K+ + + PE + E + +++++ + D+
Sbjct: 224 LMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLKQLYKIVPIKDIRN 283
Query: 101 ILVQLPLP 108
+ V P+P
Sbjct: 284 LYVTFPIP 291
>pdb|3E4Z|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
pdb|3E4Z|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
Length = 990
Score = 28.1 bits (61), Expect = 4.6, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 42 LAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDI-DLPEQVSEAELISKVHELNVMPDVHG 100
L V+V GR+ ++ K +EV K+ + + PE + E + +++++ + D+
Sbjct: 224 LMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLKQLYKIVPIKDIRN 283
Query: 101 ILVQLPLP 108
+ V P+P
Sbjct: 284 LYVTFPIP 291
>pdb|2WBY|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WBY|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WC0|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|2WC0|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|3H44|A Chain A, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3H44|B Chain B, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3OFI|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3OFI|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3N56|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N56|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N57|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|3N57|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|2YPU|A Chain A, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
pdb|2YPU|B Chain B, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
Length = 990
Score = 28.1 bits (61), Expect = 4.6, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 42 LAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDI-DLPEQVSEAELISKVHELNVMPDVHG 100
L V+V GR+ ++ K +EV K+ + + PE + E + +++++ + D+
Sbjct: 224 LMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLKQLYKIVPIKDIRN 283
Query: 101 ILVQLPLP 108
+ V P+P
Sbjct: 284 LYVTFPIP 291
>pdb|3CWW|A Chain A, Crystal Structure Of Ide-Bradykinin Complex
pdb|3CWW|B Chain B, Crystal Structure Of Ide-Bradykinin Complex
Length = 990
Score = 28.1 bits (61), Expect = 4.6, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 42 LAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDI-DLPEQVSEAELISKVHELNVMPDVHG 100
L V+V GR+ ++ K +EV K+ + + PE + E + +++++ + D+
Sbjct: 224 LMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLKQLYKIVPIKDIRN 283
Query: 101 ILVQLPLP 108
+ V P+P
Sbjct: 284 LYVTFPIP 291
>pdb|2Q2Q|A Chain A, Structure Of D-3-Hydroxybutyrate Dehydrogenase From
Pseudomonas Putida
pdb|2Q2Q|B Chain B, Structure Of D-3-Hydroxybutyrate Dehydrogenase From
Pseudomonas Putida
pdb|2Q2Q|C Chain C, Structure Of D-3-Hydroxybutyrate Dehydrogenase From
Pseudomonas Putida
pdb|2Q2Q|D Chain D, Structure Of D-3-Hydroxybutyrate Dehydrogenase From
Pseudomonas Putida
pdb|2Q2Q|E Chain E, Structure Of D-3-Hydroxybutyrate Dehydrogenase From
Pseudomonas Putida
pdb|2Q2Q|F Chain F, Structure Of D-3-Hydroxybutyrate Dehydrogenase From
Pseudomonas Putida
pdb|2Q2Q|G Chain G, Structure Of D-3-Hydroxybutyrate Dehydrogenase From
Pseudomonas Putida
pdb|2Q2Q|H Chain H, Structure Of D-3-Hydroxybutyrate Dehydrogenase From
Pseudomonas Putida
pdb|2Q2V|A Chain A, Structure Of D-3-Hydroxybutyrate Dehydrogenase From
Pseudomonas Putida
pdb|2Q2V|B Chain B, Structure Of D-3-Hydroxybutyrate Dehydrogenase From
Pseudomonas Putida
pdb|2Q2V|C Chain C, Structure Of D-3-Hydroxybutyrate Dehydrogenase From
Pseudomonas Putida
pdb|2Q2V|D Chain D, Structure Of D-3-Hydroxybutyrate Dehydrogenase From
Pseudomonas Putida
pdb|2Q2W|A Chain A, Structure Of D-3-Hydroxybutyrate Dehydrogenase From
Pseudomonas Putida
pdb|2Q2W|B Chain B, Structure Of D-3-Hydroxybutyrate Dehydrogenase From
Pseudomonas Putida
pdb|2Q2W|C Chain C, Structure Of D-3-Hydroxybutyrate Dehydrogenase From
Pseudomonas Putida
pdb|2Q2W|D Chain D, Structure Of D-3-Hydroxybutyrate Dehydrogenase From
Pseudomonas Putida
Length = 255
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 164 TIKGKRAVVVGRSNIVGLPVSLLLLKADATVTI 196
T+KGK A+V G ++ +GL ++ +L +A A + +
Sbjct: 1 TLKGKTALVTGSTSGIGLGIAQVLARAGANIVL 33
>pdb|3MTG|A Chain A, Crystal Structure Of Human S-Adenosyl Homocysteine
Hydrolase Protein
pdb|3MTG|B Chain B, Crystal Structure Of Human S-Adenosyl Homocysteine
Hydrolase Protein
Length = 444
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 66/166 (39%), Gaps = 37/166 (22%)
Query: 91 ELNVMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPL----NIGKL---AMKGRD 143
+ N++ D G L K+ N K + I +E+ V G H L GKL AM D
Sbjct: 136 QANMILDDGGDLTHWVYKKYPNVFKKIRGI-VEESVTGVHRLYQLSKAGKLCVPAMNVND 194
Query: 144 PLF------LPCTPKGCLELLKRS-GVTIKGKRAVVVGRSNI-VGLPVSLLLLKADATVT 195
+ L C + L+ LKR+ V GK+ VV G + G +L L A
Sbjct: 195 SVTKQKFDNLYCCRESILDGLKRTTDVMFGGKQVVVCGYGEVGKGCCAALKALGA----- 249
Query: 196 IVHSHTTDP----------------ESIVREADIVIAAAGQAMMVT 225
IV+ DP ++R+ D+VI G +VT
Sbjct: 250 IVYITEIDPICALQACMDGFRVVKLNEVIRQVDVVITCTGNKNVVT 295
>pdb|3AFM|A Chain A, Crystal Structure Of Aldose Reductase A1-R Responsible For
Alginate Metabolism
pdb|3AFM|B Chain B, Crystal Structure Of Aldose Reductase A1-R Responsible For
Alginate Metabolism
pdb|3AFN|B Chain B, Crystal Structure Of Aldose Reductase A1-R Complexed With
Nadp
pdb|3AFN|A Chain A, Crystal Structure Of Aldose Reductase A1-R Complexed With
Nadp
pdb|3AFN|C Chain C, Crystal Structure Of Aldose Reductase A1-R Complexed With
Nadp
pdb|3AFN|D Chain D, Crystal Structure Of Aldose Reductase A1-R Complexed With
Nadp
Length = 258
Score = 26.9 bits (58), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 165 IKGKRAVVVGRSNIVGLPVSLLLLKADATV 194
+KGKR ++ G S +GL + L +A A V
Sbjct: 5 LKGKRVLITGSSQGIGLATARLFARAGAKV 34
>pdb|2XKB|A Chain A, Crystal Structure Of Gdp-Form Protofilaments Of Bacillus
Thuringiensis Serovar Israelensis Tubz
pdb|2XKB|B Chain B, Crystal Structure Of Gdp-Form Protofilaments Of Bacillus
Thuringiensis Serovar Israelensis Tubz
pdb|2XKB|C Chain C, Crystal Structure Of Gdp-Form Protofilaments Of Bacillus
Thuringiensis Serovar Israelensis Tubz
pdb|2XKB|D Chain D, Crystal Structure Of Gdp-Form Protofilaments Of Bacillus
Thuringiensis Serovar Israelensis Tubz
pdb|2XKB|E Chain E, Crystal Structure Of Gdp-Form Protofilaments Of Bacillus
Thuringiensis Serovar Israelensis Tubz
pdb|2XKB|F Chain F, Crystal Structure Of Gdp-Form Protofilaments Of Bacillus
Thuringiensis Serovar Israelensis Tubz
pdb|2XKB|G Chain G, Crystal Structure Of Gdp-Form Protofilaments Of Bacillus
Thuringiensis Serovar Israelensis Tubz
pdb|2XKB|H Chain H, Crystal Structure Of Gdp-Form Protofilaments Of Bacillus
Thuringiensis Serovar Israelensis Tubz
pdb|2XKB|I Chain I, Crystal Structure Of Gdp-Form Protofilaments Of Bacillus
Thuringiensis Serovar Israelensis Tubz
pdb|2XKB|J Chain J, Crystal Structure Of Gdp-Form Protofilaments Of Bacillus
Thuringiensis Serovar Israelensis Tubz
pdb|2XKB|K Chain K, Crystal Structure Of Gdp-Form Protofilaments Of Bacillus
Thuringiensis Serovar Israelensis Tubz
pdb|2XKB|L Chain L, Crystal Structure Of Gdp-Form Protofilaments Of Bacillus
Thuringiensis Serovar Israelensis Tubz
Length = 427
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 23 SEIAEEVRLLSEKYGK--VPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQV 80
SEI E +R +G + LA VIV Q + ++ +K+ ++ E V
Sbjct: 184 SEIDEFMREQDRLFGNSDIKPLANVIVNDNTQMQRIIESQK---GTKDLKNRYVNWKE-V 239
Query: 81 SEAELISKVHELNVMPDVHG 100
+ ++S +HE+N++P+ +G
Sbjct: 240 ANDNVVSTLHEINIIPENYG 259
>pdb|2XKA|A Chain A, Crystal Structure Of A Gtpys-Form Protofilament Of
Bacillus Thuringiensis Serovar Israelensis Tubz
pdb|2XKA|B Chain B, Crystal Structure Of A Gtpys-Form Protofilament Of
Bacillus Thuringiensis Serovar Israelensis Tubz
pdb|2XKA|C Chain C, Crystal Structure Of A Gtpys-Form Protofilament Of
Bacillus Thuringiensis Serovar Israelensis Tubz
pdb|2XKA|D Chain D, Crystal Structure Of A Gtpys-Form Protofilament Of
Bacillus Thuringiensis Serovar Israelensis Tubz
pdb|2XKA|E Chain E, Crystal Structure Of A Gtpys-Form Protofilament Of
Bacillus Thuringiensis Serovar Israelensis Tubz
pdb|2XKA|F Chain F, Crystal Structure Of A Gtpys-Form Protofilament Of
Bacillus Thuringiensis Serovar Israelensis Tubz
pdb|2XKA|G Chain G, Crystal Structure Of A Gtpys-Form Protofilament Of
Bacillus Thuringiensis Serovar Israelensis Tubz
Length = 421
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 23 SEIAEEVRLLSEKYGK--VPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQV 80
SEI E +R +G + LA VIV Q + ++ +K+ ++ E V
Sbjct: 184 SEIDEFMREQDRLFGNSDIKPLANVIVNDNTQMQRIIESQK---GTKDLKNRYVNWKE-V 239
Query: 81 SEAELISKVHELNVMPDVHG 100
+ ++S +HE+N++P+ +G
Sbjct: 240 ANDNVVSTLHEINIIPENYG 259
>pdb|3M8K|A Chain A, Protein Structure Of Type Iii Plasmid Segregation Tubz
Length = 428
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 23 SEIAEEVRLLSEKYGK--VPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQV 80
SEI E R +G + LA VIV Q + ++ +K+ ++ E V
Sbjct: 184 SEIDEFXREQDRLFGNSDIKPLANVIVNDNTQXQRIIESQK---GTKDLKNRYVNWKE-V 239
Query: 81 SEAELISKVHELNVMPDVHG 100
+ ++S +HE+N++P+ +G
Sbjct: 240 ANDNVVSTLHEINIIPENYG 259
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,297,066
Number of Sequences: 62578
Number of extensions: 252582
Number of successful extensions: 1189
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1155
Number of HSP's gapped (non-prelim): 44
length of query: 229
length of database: 14,973,337
effective HSP length: 95
effective length of query: 134
effective length of database: 9,028,427
effective search space: 1209809218
effective search space used: 1209809218
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)