BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027065
(229 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F1Y|A Chain A, Mannosyl-3-Phosphoglycerate Synthase From Rubrobacter
Xylanophilus
pdb|3F1Y|C Chain C, Mannosyl-3-Phosphoglycerate Synthase From Rubrobacter
Xylanophilus
pdb|3KIA|A Chain A, Crystal Structure Of Mannosyl-3-Phosphoglycerate Synthase
From Rubrobacter Xylanophilus
pdb|3KIA|C Chain C, Crystal Structure Of Mannosyl-3-Phosphoglycerate Synthase
From Rubrobacter Xylanophilus
pdb|3O3P|A Chain A, Crystal Structure Of R. Xylanophilus Mpgs In Complex With
Gdp-Mannose
pdb|3O3P|B Chain B, Crystal Structure Of R. Xylanophilus Mpgs In Complex With
Gdp-Mannose
Length = 387
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 73/149 (48%), Gaps = 15/149 (10%)
Query: 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
+S ++P+ N + G +DE ++ L +RA ++L++D S DGT VA +
Sbjct: 96 VSAVLPSRNVADTVGGIIDE-IHALNERA----PLIDQILVVDADSEDGTAGVAASHGAE 150
Query: 128 YTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEK------LESQ- 180
+N + G HGKG+A+ + + +RG+L+L +DAD L LE
Sbjct: 151 VYSENELMSGYGDAHGKGDAMWRALSVTRGDLVLYIDADTRDFRPQLAYGVLGPVLEVPG 210
Query: 181 ---IHAVGRKEYNHGDSVTVDSTFRISDI 206
+ A R+ + G+S+ D R++++
Sbjct: 211 VRFVKAAYRRPFRKGESIEEDGGGRVTEL 239
>pdb|3L7M|A Chain A, Structure Of The Wall Teichoic Acid Polymerase Tagf, H548a
pdb|3L7M|B Chain B, Structure Of The Wall Teichoic Acid Polymerase Tagf, H548a
pdb|3L7M|C Chain C, Structure Of The Wall Teichoic Acid Polymerase Tagf, H548a
pdb|3L7M|D Chain D, Structure Of The Wall Teichoic Acid Polymerase Tagf, H548a
Length = 729
Score = 41.2 bits (95), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
+++I+ +N E + G L+ ++Q+ +D + ++I++DGS+D +K++ + ++
Sbjct: 4 LTIIVTYYNAEEYITGCLES----IKQQRTQD----FNLIIVNDGSTDQSKKLMDEAIKD 55
Query: 128 YTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDAD 166
Y N+R I L N G A + + LDAD
Sbjct: 56 YD-KNIRFIDLDENSGHAHARNIALEEVETPYFMFLDAD 93
>pdb|3L7J|A Chain A, Structure Of The Wall Teichoic Acid Polymerase Tagf, H444n
V
pdb|3L7J|B Chain B, Structure Of The Wall Teichoic Acid Polymerase Tagf, H444n
V
pdb|3L7J|C Chain C, Structure Of The Wall Teichoic Acid Polymerase Tagf, H444n
V
pdb|3L7J|D Chain D, Structure Of The Wall Teichoic Acid Polymerase Tagf, H444n
V
pdb|3L7K|A Chain A, Structure Of The Wall Teichoic Acid Polymerase Tagf, H444n
+ Minute Soak)
pdb|3L7K|B Chain B, Structure Of The Wall Teichoic Acid Polymerase Tagf, H444n
+ Minute Soak)
pdb|3L7K|C Chain C, Structure Of The Wall Teichoic Acid Polymerase Tagf, H444n
+ Minute Soak)
pdb|3L7K|D Chain D, Structure Of The Wall Teichoic Acid Polymerase Tagf, H444n
+ Minute Soak)
pdb|3L7L|A Chain A, Structure Of The Wall Teichoic Acid Polymerase Tagf, H444n
+ Minute Soak)
pdb|3L7L|B Chain B, Structure Of The Wall Teichoic Acid Polymerase Tagf, H444n
+ Minute Soak)
pdb|3L7L|C Chain C, Structure Of The Wall Teichoic Acid Polymerase Tagf, H444n
+ Minute Soak)
pdb|3L7L|D Chain D, Structure Of The Wall Teichoic Acid Polymerase Tagf, H444n
+ Minute Soak)
Length = 729
Score = 41.2 bits (95), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
+++I+ +N E + G L+ ++Q+ +D + ++I++DGS+D +K++ + ++
Sbjct: 4 LTIIVTYYNAEEYITGCLES----IKQQRTQD----FNLIIVNDGSTDQSKKLMDEAIKD 55
Query: 128 YTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDAD 166
Y N+R I L N G A + + LDAD
Sbjct: 56 YD-KNIRFIDLDENSGHAHARNIALEEVETPYFMFLDAD 93
>pdb|3L7I|A Chain A, Structure Of The Wall Teichoic Acid Polymerase Tagf
pdb|3L7I|B Chain B, Structure Of The Wall Teichoic Acid Polymerase Tagf
pdb|3L7I|C Chain C, Structure Of The Wall Teichoic Acid Polymerase Tagf
pdb|3L7I|D Chain D, Structure Of The Wall Teichoic Acid Polymerase Tagf
Length = 729
Score = 40.8 bits (94), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
+++I+ +N E + G L+ ++Q+ +D + ++I++DGS+D +K++ + ++
Sbjct: 4 LTIIVTYYNAEEYITGCLES----IKQQRTQD----FNLIIVNDGSTDQSKKLMDEAIKD 55
Query: 128 YTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDAD 166
Y N+R I L N G A + + LDAD
Sbjct: 56 YD-KNIRFIDLDENSGHAHARNIALEEVETPYFMFLDAD 93
>pdb|3CKJ|A Chain A, Crystal Structure Of A Mycobacterial Protein
pdb|3CKN|A Chain A, Crystal Structure Of A Mycobacterial Protein
pdb|3CKO|A Chain A, Crystal Structure Of A Mycobacterial Protein
pdb|3CKQ|A Chain A, Crystal Structure Of A Mycobacterial Protein
pdb|3CKV|A Chain A, Crystal Structure Of A Mycobacterial Protein
Length = 329
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 58/108 (53%), Gaps = 17/108 (15%)
Query: 64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFD 123
A + IS+++PA +EE + G++ ++++ L E++++D GS+D T+ A
Sbjct: 46 AGRTISVVLPALDEEDTI-GSVIDSISPLVD------GLVDELIVLDSGSTDDTEIRAVA 98
Query: 124 -----FVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDAD 166
R+ + V I GKGEA+ + + SRG++++ +D+D
Sbjct: 99 AGARVVSREQALPEVPI-----RPGKGEALWRSLAASRGDIVVFVDSD 141
>pdb|3E25|A Chain A, Crystal Structure Of M. Tuberculosis Glucosyl-3-
Phosphoglycerate Synthase
pdb|3E26|A Chain A, Crystal Structure Of M. Tuberculosis Glucosyl-3-
Phosphoglycerate Synthase
Length = 337
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Query: 64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFD 123
A + IS+++PA NEE + +D + E++++D GS+D T+ A
Sbjct: 41 AGRTISVVLPALNEEATIESVIDSISPLVD-------GLVDELIVLDSGSTDDTEIRAIA 93
Query: 124 FVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDAD 166
+ + + GKGEA+ + + + G++++ +D+D
Sbjct: 94 SGARVVSREQALPEVPVRPGKGEALWRSLAATSGDIVVFIDSD 136
>pdb|4DDZ|A Chain A, Crystal Structure Of Glucosyl-3-Phosphoglycerate Synthase
From Mycobacterium Tuberculosis
pdb|4DE7|A Chain A, Crystal Structure Of Glucosyl-3-Phosphoglycerate Synthase
From Mycobacterium Tuberculosis In Complex With Mg2+ And
Uridine- Diphosphate (Udp)
pdb|4DEC|A Chain A, Crystal Structure Of Glucosyl-3-Phosphoglycerate Synthase
From Mycobacterium Tuberculosis In Complex With Mn2+,
Uridine-Diphosphate (Udp) And Phosphoglyceric Acid (Pga)
Length = 344
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Query: 64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFD 123
A + IS+++PA NEE + +D + E++++D GS+D T+ A
Sbjct: 61 AGRTISVVLPALNEEATIESVIDSISPLVD-------GLVDELIVLDSGSTDDTEIRAIA 113
Query: 124 FVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDAD 166
+ + + GKGEA+ + + + G++++ +D+D
Sbjct: 114 SGARVVSREQALPEVPVRPGKGEALWRSLAATSGDIVVFIDSD 156
>pdb|2Z86|A Chain A, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
pdb|2Z86|B Chain B, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
pdb|2Z86|C Chain C, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
pdb|2Z86|D Chain D, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
Length = 625
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 25/121 (20%)
Query: 48 DPSSLKQVPCPSVTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFT-YEV 106
+ ++LK+VP +S+ IPA+N + ++ LN ++ T EV
Sbjct: 367 ESATLKRVP----------LVSIYIPAYNCSKYIVRCVESALN---------QTITDLEV 407
Query: 107 LIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG-RNHGKGEAIRKGMLHSRGELLLMLDA 165
I DDGS+D T R+ ++++ ++ R+ + +N G G A + RG + LD+
Sbjct: 408 CICDDGSTDDTLRI----LQEHYANHPRVRFISQKNKGIGSASNTAVRLCRGFYIGQLDS 463
Query: 166 D 166
D
Sbjct: 464 D 464
Score = 30.4 bits (67), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 13/103 (12%)
Query: 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
+S++IP +N L L N Q+ D YEV++ DDGS + + + +F
Sbjct: 95 LSIVIPTYNRAKILAITLACLCN---QKTIYD----YEVIVADDGSKENIEEIVREFESL 147
Query: 128 YTVDNVRIILLGRNHG-KGEAIRK-GMLHSRGELLLMLDADGA 168
+ VR +++G + A+R G+ ++ + +LD D A
Sbjct: 148 LNIKYVR----QKDYGYQLCAVRNLGLRAAKYNYVAILDCDMA 186
>pdb|2Z87|A Chain A, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With Udp-
Galnac And Udp
pdb|2Z87|B Chain B, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With Udp-
Galnac And Udp
Length = 624
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 25/121 (20%)
Query: 48 DPSSLKQVPCPSVTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFT-YEV 106
+ ++LK+VP +S+ IPA+N + ++ LN ++ T EV
Sbjct: 366 ESATLKRVP----------LVSIYIPAYNCSKYIVRCVESALN---------QTITDLEV 406
Query: 107 LIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG-RNHGKGEAIRKGMLHSRGELLLMLDA 165
I DDGS+D T R+ ++++ ++ R+ + +N G G A + RG + LD+
Sbjct: 407 CICDDGSTDDTLRI----LQEHYANHPRVRFISQKNKGIGSASNTAVRLCRGFYIGQLDS 462
Query: 166 D 166
D
Sbjct: 463 D 463
Score = 30.4 bits (67), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 13/103 (12%)
Query: 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
+S++IP +N L L N Q+ D YEV++ DDGS + + + +F
Sbjct: 94 LSIVIPTYNRAKILAITLACLCN---QKTIYD----YEVIVADDGSKENIEEIVREFESL 146
Query: 128 YTVDNVRIILLGRNHG-KGEAIRK-GMLHSRGELLLMLDADGA 168
+ VR +++G + A+R G+ ++ + +LD D A
Sbjct: 147 LNIKYVR----QKDYGYQLCAVRNLGLRAAKYNYVAILDCDMA 185
>pdb|1XHB|A Chain A, The Crystal Structure Of Udp-Galnac: Polypeptide Alpha-N-
Acetylgalactosaminyltransferase-T1
Length = 472
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 105 EVLIIDDGSS-DGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLML 163
E++++DD S D KR +V+K V V +I + + G A KG SRG+++ L
Sbjct: 63 EIVLVDDASERDFLKRPLESYVKKLKVP-VHVIRMEQRSGLIRARLKGAAVSRGQVITFL 121
Query: 164 DADGATKVTDLEKLESQI 181
DA LE L ++I
Sbjct: 122 DAHCECTAGWLEPLLARI 139
>pdb|1ZIT|A Chain A, Structure Of The Receiver Domain Of Ntrc4 From Aquifex
Aeolicus
pdb|2JRL|A Chain A, Solution Structure Of The Beryllofluoride-Activated Ntrc4
Receiver Domain Dimer
pdb|2JRL|B Chain B, Solution Structure Of The Beryllofluoride-Activated Ntrc4
Receiver Domain Dimer
Length = 121
Score = 30.4 bits (67), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 10/96 (10%)
Query: 60 VTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKR 119
V D E S + EE P +T L++ K K + V+++D DG
Sbjct: 6 VVDDEESITSSLSAILEEEGYHP----DTAKTLREAEKKIKELFFPVIVLDVWMPDGDGV 61
Query: 120 VAFDFVRKYTVDNVRIILLGRNHGKGE----AIRKG 151
DF+++ + D+V I++ G HG + AI+KG
Sbjct: 62 NFIDFIKENSPDSVVIVITG--HGSVDTAVKAIKKG 95
>pdb|3DZD|A Chain A, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
pdb|3DZD|B Chain B, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
Length = 368
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 10/96 (10%)
Query: 60 VTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKR 119
V D E S + EE P +T L++ K K + V+++D DG
Sbjct: 5 VVDDEESITSSLSAILEEEGYHP----DTAKTLREAEKKIKELFFPVIVLDVWXPDGDGV 60
Query: 120 VAFDFVRKYTVDNVRIILLGRNHGKGE----AIRKG 151
DF+++ + D+V I++ G HG + AI+KG
Sbjct: 61 NFIDFIKENSPDSVVIVITG--HGSVDTAVKAIKKG 94
>pdb|2JBW|A Chain A, Crystal Structure Of The 2,6-Dihydroxy-Pseudo-Oxynicotine
Hydrolase.
pdb|2JBW|B Chain B, Crystal Structure Of The 2,6-Dihydroxy-Pseudo-Oxynicotine
Hydrolase.
pdb|2JBW|C Chain C, Crystal Structure Of The 2,6-Dihydroxy-Pseudo-Oxynicotine
Hydrolase.
pdb|2JBW|D Chain D, Crystal Structure Of The 2,6-Dihydroxy-Pseudo-Oxynicotine
Hydrolase
Length = 386
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 31/134 (23%)
Query: 52 LKQVPCPSVTDPAEKYISLII-----PAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEV 106
L Q P ++ PAE++ L++ P + PG + + K++SF E
Sbjct: 115 LYQKAAPLLSPPAERH-ELVVDGIPXPVYVRIPEGPGPHPAVIXLGGLESTKEESFQXEN 173
Query: 107 LIIDDGSSDGT------------KRVAFDFVRKYT------------VDNVRIILLGRNH 142
L++D G + T KR+A D+ KYT + N I +LGR+
Sbjct: 174 LVLDRGXATATFDGPGQGEXFEYKRIAGDY-EKYTSAVVDLLTKLEAIRNDAIGVLGRSL 232
Query: 143 GKGEAIRKGMLHSR 156
G A++ R
Sbjct: 233 GGNYALKSAACEPR 246
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 113 SSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVT 172
+ +G RV +F+ K+T NV RNH A L+ R E++ ++ A+GA T
Sbjct: 111 AKEGHLRV-VEFLVKHTASNVGH----RNHKGDTACDLARLYGRNEVVSLMQANGAGGAT 165
Query: 173 DLE 175
+L+
Sbjct: 166 NLQ 168
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 113 SSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVT 172
+ +G RV +F+ K+T NV RNH A L+ R E++ ++ A+GA T
Sbjct: 111 AKEGHLRV-VEFLVKHTASNVGH----RNHKGDTACDLARLYGRNEVVSLMQANGAGGAT 165
Query: 173 DLE 175
+L+
Sbjct: 166 NLQ 168
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 113 SSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVT 172
+ +G RV +F+ K+T NV RNH A L+ R E++ ++ A+GA T
Sbjct: 111 AKEGHLRV-VEFLVKHTASNVGH----RNHKGDTACDLARLYGRNEVVSLMQANGAGGAT 165
Query: 173 DLE 175
+L+
Sbjct: 166 NLQ 168
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 113 SSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVT 172
+ +G RV +F+ K+T NV RNH A L+ R E++ ++ A+GA T
Sbjct: 111 AKEGHLRV-VEFLVKHTASNVGH----RNHKGDTACDLARLYGRNEVVSLMQANGAGGAT 165
Query: 173 DLE 175
+L+
Sbjct: 166 NLQ 168
>pdb|2V1P|A Chain A, Crystal Structure Of The Apo Form Of Y74f Mutant E. Coli
Tryptophanase
Length = 467
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 48 DPSSLKQVPCPSVTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDK--SFTYE 105
DP + KQ+PCP+ + + L IP + E ++++ AA K +FTYE
Sbjct: 400 DPKTGKQLPCPA------ELLRLTIPRATYTQTHMDFIIEAFKHVKENAANIKGLTFTYE 453
>pdb|2V0Y|A Chain A, Crystal Structure Of Apo C298s Tryptophanase From E.Coli
Length = 467
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 48 DPSSLKQVPCPSVTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDK--SFTYE 105
DP + KQ+PCP+ + + L IP + E ++++ AA K +FTYE
Sbjct: 400 DPKTGKQLPCPA------ELLRLTIPRATYTQTHMDFIIEAFKHVKENAANIKGLTFTYE 453
>pdb|2OQX|A Chain A, Crystal Structure Of The Apo Form Of E. Coli Tryptophanase
At 1.9 A Resolution
Length = 467
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 48 DPSSLKQVPCPSVTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDK--SFTYE 105
DP + KQ+PCP+ + + L IP + E ++++ AA K +FTYE
Sbjct: 400 DPKTGKQLPCPA------ELLRLTIPRATYTQTHMDFIIEAFKHVKENAANIKGLTFTYE 453
>pdb|2O8B|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T MISPAIR
pdb|2O8C|B Chain B, Human Mutsalpha (msh2/msh6) Bound To Adp And An
O6-methyl-guanine T Mispair
pdb|2O8D|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G DU MISPAIR
pdb|2O8E|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO A G T MISPAIR, WITH
ADP BOUND TO Msh2 Only
pdb|2O8F|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO DNA WITH A SINGLE BASE
T INSERT
Length = 1022
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 170 KVTDLEKLESQIHAVGR--KEYNHGDS 194
K+ DLE+L S+IH VG K NH DS
Sbjct: 476 KLPDLERLLSKIHNVGSPLKSQNHPDS 502
>pdb|4HPQ|B Chain B, Crystal Structure Of The Atg17-Atg31-Atg29 Complex
pdb|4HPQ|E Chain E, Crystal Structure Of The Atg17-Atg31-Atg29 Complex
Length = 159
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 158 ELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFR------ISDIPIAAF 211
E +++++AD + +VT +E + Q VG E G+ V +D+ R + ++P+
Sbjct: 69 ENVVIIEADESLRVTQVEMISDQFKQVGY-EVRDGNEVCIDAMSRFETPRQLGNLPLEKL 127
Query: 212 GSRAHLEEKALATL 225
L+ L +L
Sbjct: 128 VQLYKLQNDQLHSL 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,356,820
Number of Sequences: 62578
Number of extensions: 256623
Number of successful extensions: 606
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 590
Number of HSP's gapped (non-prelim): 25
length of query: 229
length of database: 14,973,337
effective HSP length: 95
effective length of query: 134
effective length of database: 9,028,427
effective search space: 1209809218
effective search space used: 1209809218
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)