Query 027065
Match_columns 229
No_of_seqs 211 out of 2572
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 04:28:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027065.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027065hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00260 dolichyl-phosphate be 99.9 4.2E-25 9E-30 187.3 20.6 122 62-183 66-189 (333)
2 PRK11204 N-glycosyltransferase 99.9 7.9E-25 1.7E-29 191.4 21.4 124 63-196 51-174 (420)
3 PRK14583 hmsR N-glycosyltransf 99.9 3.7E-24 8.1E-29 188.4 21.3 122 64-195 73-194 (444)
4 KOG2977 Glycosyltransferase [G 99.9 3.1E-24 6.7E-29 171.1 18.0 200 14-229 14-215 (323)
5 TIGR03111 glyc2_xrt_Gpos1 puta 99.9 9.1E-24 2E-28 185.6 20.7 121 64-194 47-169 (439)
6 PRK10073 putative glycosyl tra 99.9 6.8E-24 1.5E-28 179.7 15.7 110 65-185 5-114 (328)
7 TIGR03472 HpnI hopanoid biosyn 99.9 4.5E-23 9.7E-28 177.8 20.7 120 64-192 39-161 (373)
8 cd02520 Glucosylceramide_synth 99.9 4.2E-23 9E-28 162.6 15.7 119 66-193 1-122 (196)
9 TIGR03469 HonB hopene-associat 99.9 6.8E-23 1.5E-27 177.3 17.8 115 63-185 37-162 (384)
10 PRK10018 putative glycosyl tra 99.9 7.3E-23 1.6E-27 169.4 16.1 120 65-194 4-123 (279)
11 PLN02726 dolichyl-phosphate be 99.9 1.3E-22 2.8E-27 165.0 16.8 123 64-193 7-129 (243)
12 cd06427 CESA_like_2 CESA_like_ 99.9 1E-22 2.2E-27 165.3 13.8 118 66-192 1-121 (241)
13 cd04196 GT_2_like_d Subfamily 99.9 1.5E-22 3.3E-27 160.5 14.3 120 69-197 1-120 (214)
14 cd04195 GT2_AmsE_like GT2_AmsE 99.9 2.2E-22 4.7E-27 158.5 14.3 119 69-198 1-122 (201)
15 cd04184 GT2_RfbC_Mx_like Myxoc 99.9 4.7E-22 1E-26 156.6 14.9 121 66-196 1-123 (202)
16 PF00535 Glycos_transf_2: Glyc 99.9 2.6E-22 5.7E-27 152.2 12.9 111 69-189 1-111 (169)
17 cd04188 DPG_synthase DPG_synth 99.9 2.9E-22 6.3E-27 159.4 11.9 111 70-185 1-111 (211)
18 PRK10063 putative glycosyl tra 99.9 9.6E-22 2.1E-26 160.4 14.7 120 66-195 1-120 (248)
19 PRK10714 undecaprenyl phosphat 99.9 1.8E-21 3.9E-26 164.6 16.6 118 65-188 5-122 (325)
20 cd06439 CESA_like_1 CESA_like_ 99.9 1.8E-21 3.8E-26 158.6 15.3 123 61-196 24-148 (251)
21 cd06437 CESA_CaSu_A2 Cellulose 99.9 2E-21 4.4E-26 156.7 14.1 119 66-194 1-124 (232)
22 cd06421 CESA_CelA_like CESA_Ce 99.9 2.4E-21 5.3E-26 155.8 13.8 117 66-193 1-121 (234)
23 cd02510 pp-GalNAc-T pp-GalNAc- 99.9 2.4E-21 5.1E-26 162.3 13.3 114 69-188 1-115 (299)
24 cd06913 beta3GnTL1_like Beta 1 99.9 4.9E-21 1.1E-25 153.1 13.9 112 70-189 1-117 (219)
25 cd06442 DPM1_like DPM1_like re 99.9 4.9E-21 1.1E-25 153.1 13.9 106 70-184 1-106 (224)
26 cd04187 DPM1_like_bac Bacteria 99.9 6.8E-21 1.5E-25 147.8 14.3 112 70-188 1-112 (181)
27 TIGR03030 CelA cellulose synth 99.9 4.3E-20 9.4E-25 170.6 20.8 119 63-192 128-264 (713)
28 PRK11498 bcsA cellulose syntha 99.9 4E-20 8.7E-25 171.0 19.1 117 63-192 257-375 (852)
29 cd06433 GT_2_WfgS_like WfgS an 99.9 1.4E-20 3E-25 147.3 13.6 117 69-198 1-117 (202)
30 COG1215 Glycosyltransferases, 99.8 1E-19 2.2E-24 159.7 18.7 114 65-187 53-168 (439)
31 cd06435 CESA_NdvC_like NdvC_li 99.8 2.8E-20 6.1E-25 150.2 13.2 114 69-192 1-119 (236)
32 PRK13915 putative glucosyl-3-p 99.8 1.7E-20 3.6E-25 157.3 12.2 122 64-192 29-152 (306)
33 cd04192 GT_2_like_e Subfamily 99.8 4.1E-20 9E-25 147.9 12.9 110 70-188 1-114 (229)
34 cd06438 EpsO_like EpsO protein 99.8 2E-20 4.3E-25 145.7 10.4 109 70-191 1-116 (183)
35 cd06423 CESA_like CESA_like is 99.8 4.8E-20 1E-24 140.2 12.0 121 70-199 1-121 (180)
36 cd04179 DPM_DPG-synthase_like 99.8 5E-20 1.1E-24 142.9 12.2 107 70-184 1-107 (185)
37 cd06420 GT2_Chondriotin_Pol_N 99.8 1.8E-19 3.9E-24 139.5 14.6 104 70-181 1-104 (182)
38 cd06434 GT2_HAS Hyaluronan syn 99.8 5.8E-20 1.3E-24 148.0 12.0 117 67-198 1-118 (235)
39 cd06436 GlcNAc-1-P_transferase 99.8 5.9E-20 1.3E-24 144.2 11.6 110 70-192 1-124 (191)
40 cd04185 GT_2_like_b Subfamily 99.8 7.7E-20 1.7E-24 144.2 11.7 118 70-199 1-121 (202)
41 cd02525 Succinoglycan_BP_ExoA 99.8 1.9E-19 4.1E-24 145.8 13.7 107 68-185 2-110 (249)
42 cd02511 Beta4Glucosyltransfera 99.8 1.8E-19 3.8E-24 145.4 13.0 103 68-189 2-104 (229)
43 KOG2978 Dolichol-phosphate man 99.8 5.2E-19 1.1E-23 133.4 13.0 115 66-185 3-117 (238)
44 PF13641 Glyco_tranf_2_3: Glyc 99.8 1.6E-20 3.5E-25 150.7 4.5 120 66-194 1-123 (228)
45 COG0463 WcaA Glycosyltransfera 99.8 1.1E-18 2.3E-23 135.8 13.0 107 65-182 2-108 (291)
46 PRK14716 bacteriophage N4 adso 99.8 5.3E-18 1.2E-22 150.0 17.9 110 64-182 64-184 (504)
47 cd04186 GT_2_like_c Subfamily 99.8 1.8E-18 3.8E-23 131.4 12.0 110 70-192 1-110 (166)
48 PRK05454 glucosyltransferase M 99.8 6.4E-17 1.4E-21 147.8 21.8 122 63-192 121-256 (691)
49 cd02522 GT_2_like_a GT_2_like_ 99.8 4E-18 8.7E-23 136.0 11.6 102 68-186 1-102 (221)
50 PRK11234 nfrB bacteriophage N4 99.8 4.7E-17 1E-21 149.4 19.1 115 62-186 59-184 (727)
51 cd04191 Glucan_BSP_ModH Glucan 99.7 7.6E-17 1.7E-21 131.8 15.3 122 68-193 1-132 (254)
52 cd04190 Chitin_synth_C C-termi 99.7 1E-17 2.2E-22 136.5 9.2 103 70-196 1-113 (244)
53 cd02526 GT2_RfbF_like RfbF is 99.7 1.7E-17 3.7E-22 133.8 10.2 104 70-189 1-111 (237)
54 PRK15489 nfrB bacteriophage N4 99.7 3.2E-15 7E-20 136.1 17.6 117 63-189 68-195 (703)
55 PF10111 Glyco_tranf_2_2: Glyc 99.7 2.1E-15 4.6E-20 125.3 14.7 116 69-189 1-124 (281)
56 COG1216 Predicted glycosyltran 99.6 2.3E-15 5.1E-20 126.5 12.2 122 65-198 2-126 (305)
57 TIGR01556 rhamnosyltran L-rham 99.6 4.8E-15 1E-19 123.0 11.6 98 73-185 1-102 (281)
58 cd00761 Glyco_tranf_GTA_type G 99.6 1.4E-14 3.1E-19 107.4 12.8 113 70-192 1-113 (156)
59 KOG2547 Ceramide glucosyltrans 99.4 2.2E-12 4.7E-17 107.1 13.6 130 63-200 82-214 (431)
60 KOG3738 Predicted polypeptide 99.4 1.4E-12 3E-17 109.2 8.3 115 64-189 122-237 (559)
61 cd02514 GT13_GLCNAC-TI GT13_GL 99.3 7.3E-11 1.6E-15 99.4 13.0 116 68-194 2-138 (334)
62 KOG3737 Predicted polypeptide 99.3 7.5E-12 1.6E-16 104.7 6.7 117 62-185 151-269 (603)
63 KOG3736 Polypeptide N-acetylga 99.3 5.7E-12 1.2E-16 111.9 6.2 119 63-189 139-259 (578)
64 COG2943 MdoH Membrane glycosyl 99.0 4.9E-08 1.1E-12 85.0 16.9 121 66-190 144-274 (736)
65 PF13704 Glyco_tranf_2_4: Glyc 98.4 2.3E-06 4.9E-11 59.4 7.6 83 75-173 1-88 (97)
66 PF13712 Glyco_tranf_2_5: Glyc 98.1 6.6E-06 1.4E-10 65.8 6.1 87 68-189 1-88 (217)
67 PF03142 Chitin_synth_2: Chiti 98.1 0.00012 2.5E-09 65.6 14.0 126 66-197 25-242 (527)
68 PF13506 Glyco_transf_21: Glyc 98.1 1.6E-05 3.4E-10 61.5 7.1 58 134-192 5-66 (175)
69 PF03071 GNT-I: GNT-I family; 97.9 0.00011 2.3E-09 64.0 9.7 108 64-182 91-217 (434)
70 PF09488 Osmo_MPGsynth: Mannos 97.7 0.00045 9.8E-09 58.1 10.0 104 67-183 51-185 (381)
71 PF06306 CgtA: Beta-1,4-N-acet 97.7 0.00024 5.2E-09 58.8 8.3 106 66-183 87-202 (347)
72 PF11316 Rhamno_transf: Putati 97.6 0.0012 2.7E-08 53.3 10.9 89 84-183 47-141 (234)
73 TIGR02460 osmo_MPGsynth mannos 97.6 0.00046 1E-08 57.7 8.4 105 66-183 50-185 (381)
74 PRK14503 mannosyl-3-phosphogly 97.6 0.00045 9.9E-09 58.1 8.3 104 66-182 51-185 (393)
75 PF05679 CHGN: Chondroitin N-a 97.5 0.0019 4.2E-08 58.0 12.3 116 63-183 244-368 (499)
76 COG4092 Predicted glycosyltran 97.5 0.0016 3.6E-08 52.7 9.9 111 66-181 2-119 (346)
77 PF03452 Anp1: Anp1; InterPro 97.4 0.0026 5.7E-08 52.1 10.4 110 62-177 21-164 (269)
78 PRK14502 bifunctional mannosyl 97.1 0.0027 5.9E-08 58.3 8.6 105 66-183 55-190 (694)
79 PLN02458 transferase, transfer 96.9 0.018 3.8E-07 48.3 10.9 105 64-178 110-224 (346)
80 PLN02893 Cellulose synthase-li 96.8 0.0058 1.3E-07 56.7 8.4 52 132-183 265-326 (734)
81 KOG1476 Beta-1,3-glucuronyltra 96.7 0.063 1.4E-06 44.7 12.4 107 65-184 86-208 (330)
82 PF11735 CAP59_mtransfer: Cryp 96.6 0.11 2.5E-06 42.1 13.3 110 68-182 2-137 (241)
83 PF03214 RGP: Reversibly glyco 96.5 0.0026 5.7E-08 53.1 3.6 111 67-188 9-123 (348)
84 cd00218 GlcAT-I Beta1,3-glucur 96.5 0.073 1.6E-06 42.4 11.2 99 66-178 1-117 (223)
85 PF13733 Glyco_transf_7N: N-te 96.4 0.013 2.8E-07 42.9 6.1 78 65-172 46-127 (136)
86 cd02540 GT2_GlmU_N_bac N-termi 96.3 0.044 9.6E-07 43.6 9.8 97 71-185 20-119 (229)
87 PF12804 NTP_transf_3: MobA-li 96.2 0.065 1.4E-06 40.2 9.5 97 72-188 19-118 (160)
88 cd00899 b4GalT Beta-4-Galactos 96.1 0.022 4.8E-07 45.4 6.7 79 67-175 3-85 (219)
89 KOG2571 Chitin synthase/hyalur 96.0 0.079 1.7E-06 50.0 10.8 56 146-201 428-485 (862)
90 cd04182 GT_2_like_f GT_2_like_ 95.9 0.091 2E-06 40.2 9.4 94 76-186 24-121 (186)
91 TIGR03202 pucB xanthine dehydr 95.8 0.26 5.7E-06 38.2 11.7 98 76-186 24-126 (190)
92 PF04666 Glyco_transf_54: N-Ac 95.8 0.35 7.6E-06 40.6 12.8 117 65-185 51-198 (297)
93 PLN02189 cellulose synthase 95.7 0.087 1.9E-06 50.6 9.7 52 132-183 499-560 (1040)
94 TIGR03310 matur_ygfJ molybdenu 95.7 0.22 4.8E-06 38.2 10.6 95 76-186 23-120 (188)
95 PF01697 Glyco_transf_92: Glyc 95.6 0.14 2.9E-06 42.4 9.9 109 68-186 3-137 (285)
96 KOG3916 UDP-Gal:glucosylcerami 95.3 0.2 4.4E-06 42.2 9.5 75 66-170 151-229 (372)
97 PRK00317 mobA molybdopterin-gu 95.3 0.42 9.1E-06 37.1 11.1 53 133-185 63-118 (193)
98 KOG3588 Chondroitin synthase 1 95.2 0.19 4.1E-06 42.9 9.3 106 64-179 227-336 (494)
99 KOG1413 N-acetylglucosaminyltr 95.1 0.099 2.2E-06 44.2 7.2 111 63-181 64-192 (411)
100 cd04181 NTP_transferase NTP_tr 95.0 0.32 7E-06 38.2 9.8 99 71-183 23-121 (217)
101 PF09258 Glyco_transf_64: Glyc 94.9 0.021 4.4E-07 46.7 2.6 114 68-196 1-115 (247)
102 PLN02917 CMP-KDO synthetase 94.5 1.2 2.5E-05 37.4 12.3 54 133-187 109-167 (293)
103 cd02518 GT2_SpsF SpsF is a gly 94.3 0.94 2E-05 36.3 11.0 96 76-186 22-118 (233)
104 PLN02638 cellulose synthase A 94.3 0.25 5.5E-06 47.8 8.6 52 132-183 517-578 (1079)
105 cd02503 MobA MobA catalyzes th 94.1 0.36 7.9E-06 36.9 8.0 84 76-181 24-109 (181)
106 PF13632 Glyco_trans_2_3: Glyc 94.0 0.091 2E-06 40.6 4.4 37 159-196 1-37 (193)
107 COG1213 Predicted sugar nucleo 93.8 0.23 5E-06 39.9 6.3 90 77-181 30-121 (239)
108 PLN02190 cellulose synthase-li 93.7 0.37 8E-06 45.1 8.3 55 64-124 91-149 (756)
109 cd06915 NTP_transferase_WcbM_l 93.7 1 2.3E-05 35.3 10.1 98 71-183 23-121 (223)
110 TIGR01173 glmU UDP-N-acetylglu 93.6 0.56 1.2E-05 41.5 9.3 96 71-184 22-119 (451)
111 PLN03180 reversibly glycosylat 93.6 0.042 9.1E-07 46.2 1.8 86 66-172 11-109 (346)
112 cd06422 NTP_transferase_like_1 93.6 0.96 2.1E-05 35.8 9.7 96 71-181 24-120 (221)
113 COG2068 Uncharacterized MobA-r 93.4 1.7 3.8E-05 34.1 10.4 94 75-184 28-125 (199)
114 PRK14355 glmU bifunctional N-a 93.3 1.9 4E-05 38.4 12.1 98 71-185 25-125 (459)
115 PF00483 NTP_transferase: Nucl 93.1 0.21 4.6E-06 40.2 5.4 102 71-186 24-131 (248)
116 PRK14360 glmU bifunctional N-a 93.1 1.1 2.4E-05 39.6 10.3 99 71-186 23-124 (450)
117 PRK02726 molybdopterin-guanine 93.1 0.77 1.7E-05 36.0 8.4 52 132-183 67-120 (200)
118 cd04189 G1P_TT_long G1P_TT_lon 93.1 2 4.4E-05 34.2 11.1 99 71-183 25-123 (236)
119 PLN02195 cellulose synthase A 93.0 0.23 5E-06 47.6 6.0 42 143-184 436-482 (977)
120 cd02523 PC_cytidylyltransferas 92.7 0.84 1.8E-05 36.3 8.3 90 71-178 23-114 (229)
121 TIGR03552 F420_cofC 2-phospho- 92.6 1.2 2.5E-05 34.7 8.8 51 132-183 65-118 (195)
122 PF11397 GlcNAc: Glycosyltrans 92.6 2.3 5E-05 36.5 11.0 111 68-185 2-145 (343)
123 PRK15480 glucose-1-phosphate t 92.2 2.4 5.1E-05 35.5 10.6 97 71-183 28-128 (292)
124 cd06425 M1P_guanylylT_B_like_N 92.2 1.6 3.4E-05 34.9 9.2 101 71-186 25-129 (233)
125 PRK13385 2-C-methyl-D-erythrit 92.1 1.1 2.4E-05 35.9 8.2 96 76-185 28-127 (230)
126 cd02517 CMP-KDO-Synthetase CMP 92.1 4 8.7E-05 32.6 11.6 90 76-184 24-118 (239)
127 PF03360 Glyco_transf_43: Glyc 92.1 0.45 9.9E-06 37.7 5.7 67 103-176 10-97 (207)
128 cd06428 M1P_guanylylT_A_like_N 92.0 2.2 4.7E-05 34.7 10.0 103 71-185 25-130 (257)
129 PRK00155 ispD 2-C-methyl-D-ery 91.9 5.4 0.00012 31.7 12.5 43 143-185 81-125 (227)
130 cd02509 GDP-M1P_Guanylyltransf 91.7 3 6.6E-05 34.4 10.6 95 71-179 26-126 (274)
131 TIGR01207 rmlA glucose-1-phosp 91.7 3.3 7.2E-05 34.5 10.8 98 71-184 24-125 (286)
132 cd02516 CDP-ME_synthetase CDP- 91.6 1.7 3.8E-05 34.1 8.8 100 71-185 22-125 (218)
133 TIGR02665 molyb_mobA molybdopt 91.5 1.8 3.9E-05 33.1 8.6 52 133-184 62-116 (186)
134 TIGR00453 ispD 2-C-methyl-D-er 91.1 5 0.00011 31.5 11.0 94 76-185 25-120 (217)
135 PRK14358 glmU bifunctional N-a 91.1 2.1 4.6E-05 38.4 9.7 98 71-186 29-129 (481)
136 PRK13368 3-deoxy-manno-octulos 91.1 6.7 0.00015 31.3 12.0 89 78-185 27-118 (238)
137 COG1209 RfbA dTDP-glucose pyro 91.1 4.9 0.00011 33.2 10.7 98 71-185 25-126 (286)
138 PRK14353 glmU bifunctional N-a 90.9 2 4.4E-05 38.0 9.3 100 71-186 27-129 (446)
139 PRK14352 glmU bifunctional N-a 90.5 4.2 9.1E-05 36.5 11.1 99 71-185 26-128 (482)
140 PRK14354 glmU bifunctional N-a 90.1 3.1 6.8E-05 36.9 9.8 95 71-184 24-121 (458)
141 TIGR03584 PseF pseudaminic aci 89.9 5.8 0.00012 31.7 10.4 44 141-184 75-123 (222)
142 PRK14356 glmU bifunctional N-a 89.7 2.1 4.6E-05 37.9 8.5 89 77-182 32-124 (456)
143 PRK05450 3-deoxy-manno-octulos 89.7 6.6 0.00014 31.5 10.7 89 76-184 25-119 (245)
144 cd02538 G1P_TT_short G1P_TT_sh 89.6 8.6 0.00019 30.8 11.3 98 71-183 25-125 (240)
145 cd02508 ADP_Glucose_PP ADP-glu 89.6 4.1 8.9E-05 31.7 9.2 103 71-185 23-138 (200)
146 COG1208 GCD1 Nucleoside-diphos 89.2 7.7 0.00017 33.5 11.3 98 71-184 26-125 (358)
147 cd02513 CMP-NeuAc_Synthase CMP 89.0 9.5 0.00021 29.9 11.5 43 142-184 78-126 (223)
148 cd02541 UGPase_prokaryotic Pro 88.9 5.7 0.00012 32.4 10.0 104 71-185 25-149 (267)
149 TIGR01099 galU UTP-glucose-1-p 88.8 9.4 0.0002 30.9 11.1 54 133-186 95-150 (260)
150 cd04183 GT2_BcE_like GT2_BcbE_ 88.7 5.8 0.00013 31.5 9.7 95 71-178 23-119 (231)
151 PF01762 Galactosyl_T: Galacto 88.4 4.7 0.0001 31.3 8.7 79 101-181 18-105 (195)
152 cd06426 NTP_transferase_like_2 87.5 5.9 0.00013 31.1 8.9 98 71-185 23-122 (220)
153 TIGR00454 conserved hypothetic 87.5 11 0.00025 29.0 12.1 92 77-186 26-119 (183)
154 COG0746 MobA Molybdopterin-gua 87.3 3.8 8.3E-05 32.1 7.5 54 132-185 61-116 (192)
155 PLN02893 Cellulose synthase-li 87.3 3 6.5E-05 39.3 7.9 56 63-124 98-157 (734)
156 PRK14357 glmU bifunctional N-a 87.1 8.1 0.00017 34.2 10.4 94 71-184 22-117 (448)
157 cd02524 G1P_cytidylyltransfera 87.1 9.6 0.00021 30.8 10.1 43 141-184 101-144 (253)
158 cd06431 GT8_LARGE_C LARGE cata 87.0 6.4 0.00014 32.7 9.1 105 67-181 2-121 (280)
159 PLN02436 cellulose synthase A 86.5 3.4 7.3E-05 40.4 7.9 56 63-124 362-421 (1094)
160 PRK09382 ispDF bifunctional 2- 86.4 9.3 0.0002 33.3 10.1 93 76-184 31-124 (378)
161 PLN02248 cellulose synthase-li 86.2 1.1 2.4E-05 43.8 4.5 40 144-183 603-647 (1135)
162 PRK14489 putative bifunctional 86.0 3.7 8.1E-05 35.5 7.5 44 142-185 78-122 (366)
163 PLN02915 cellulose synthase A 85.9 4.2 9E-05 39.7 8.1 56 63-124 284-343 (1044)
164 PLN02400 cellulose synthase 85.8 3.5 7.5E-05 40.4 7.6 56 63-124 353-412 (1085)
165 TIGR01208 rmlA_long glucose-1- 85.5 11 0.00023 32.3 10.0 101 71-185 24-125 (353)
166 PLN02195 cellulose synthase A 85.3 3.7 8E-05 39.8 7.5 56 63-124 249-308 (977)
167 TIGR00466 kdsB 3-deoxy-D-manno 85.1 18 0.0004 29.1 12.3 89 76-183 22-115 (238)
168 PLN02248 cellulose synthase-li 85.1 5.2 0.00011 39.3 8.4 56 63-124 364-423 (1135)
169 PLN02638 cellulose synthase A 85.0 3.7 8.1E-05 40.2 7.4 56 63-124 346-405 (1079)
170 PLN02189 cellulose synthase 84.9 4.2 9.1E-05 39.7 7.7 55 64-124 329-387 (1040)
171 TIGR01105 galF UTP-glucose-1-p 84.5 22 0.00048 29.8 11.2 103 71-185 28-158 (297)
172 cd04198 eIF-2B_gamma_N The N-t 84.3 18 0.0004 28.4 11.6 99 71-185 25-128 (214)
173 PLN02728 2-C-methyl-D-erythrit 84.0 13 0.00027 30.5 9.3 79 103-187 68-149 (252)
174 TIGR02623 G1P_cyt_trans glucos 83.6 22 0.00048 28.9 10.7 43 140-183 101-143 (254)
175 PRK09451 glmU bifunctional N-a 83.5 8.7 0.00019 34.1 8.9 94 71-182 27-122 (456)
176 COG2266 GTP:adenosylcobinamide 82.8 20 0.00042 27.7 10.5 71 103-182 41-112 (177)
177 PF01644 Chitin_synth_1: Chiti 82.8 19 0.00041 27.4 10.8 42 140-181 118-163 (163)
178 PF07507 WavE: WavE lipopolysa 82.7 6.4 0.00014 33.3 7.2 95 76-183 17-122 (311)
179 PF13896 Glyco_transf_49: Glyc 82.7 1.8 3.9E-05 36.7 4.0 41 144-184 115-155 (317)
180 PLN02436 cellulose synthase A 82.6 3.5 7.6E-05 40.3 6.2 52 132-183 533-594 (1094)
181 PLN02190 cellulose synthase-li 81.9 3.4 7.4E-05 38.9 5.7 53 132-184 253-315 (756)
182 cd00505 Glyco_transf_8 Members 81.2 20 0.00043 28.9 9.5 95 76-180 11-118 (246)
183 PF05060 MGAT2: N-acetylglucos 79.9 23 0.00049 30.6 9.6 52 66-124 31-82 (356)
184 PF03552 Cellulose_synt: Cellu 79.7 4.1 8.8E-05 38.3 5.4 53 131-183 166-228 (720)
185 PF02485 Branch: Core-2/I-Bran 79.3 16 0.00036 29.3 8.4 104 68-184 1-115 (244)
186 PLN02400 cellulose synthase 78.7 3.8 8.2E-05 40.1 5.1 53 131-183 523-585 (1085)
187 PF09886 DUF2113: Uncharacteri 78.3 30 0.00065 27.0 9.6 93 75-184 79-185 (188)
188 cd06432 GT8_HUGT1_C_like The C 76.9 26 0.00056 28.6 8.9 93 77-179 12-117 (248)
189 cd04197 eIF-2B_epsilon_N The N 76.9 34 0.00073 26.9 9.5 100 71-183 25-129 (217)
190 TIGR01479 GMP_PMI mannose-1-ph 75.8 37 0.00081 30.5 10.3 98 71-181 26-129 (468)
191 cd04194 GT8_A4GalT_like A4GalT 75.0 33 0.00072 27.5 9.1 92 79-179 13-117 (248)
192 PHA01631 hypothetical protein 74.8 4.2 9.2E-05 30.8 3.4 63 103-172 17-87 (176)
193 COG1211 IspD 4-diphosphocytidy 74.6 44 0.00095 27.0 9.8 93 76-182 30-126 (230)
194 PF02348 CTP_transf_3: Cytidyl 74.1 40 0.00086 26.3 10.7 91 79-187 25-120 (217)
195 PF11051 Mannosyl_trans3: Mann 73.9 24 0.00052 29.1 8.1 94 70-171 4-105 (271)
196 PRK13389 UTP--glucose-1-phosph 73.8 53 0.0011 27.6 10.9 104 71-185 33-163 (302)
197 PLN02915 cellulose synthase A 73.7 5.9 0.00013 38.7 4.8 51 132-182 455-515 (1044)
198 KOG1022 Acetylglucosaminyltran 72.6 17 0.00036 33.0 7.0 111 64-192 441-555 (691)
199 COG1210 GalU UDP-glucose pyrop 71.8 31 0.00068 28.7 8.0 60 131-190 97-158 (291)
200 PRK10122 GalU regulator GalF; 71.4 60 0.0013 27.2 11.3 53 132-185 98-158 (297)
201 PRK14490 putative bifunctional 70.5 30 0.00065 30.0 8.2 50 132-181 233-284 (369)
202 PF01755 Glyco_transf_25: Glyc 70.4 47 0.001 25.6 9.3 82 101-183 27-112 (200)
203 PRK15171 lipopolysaccharide 1, 69.4 72 0.0016 27.3 10.7 106 66-180 24-143 (334)
204 cd06430 GT8_like_2 GT8_like_2 67.7 75 0.0016 26.9 9.8 108 68-185 3-124 (304)
205 PLN03183 acetylglucosaminyltra 66.0 97 0.0021 27.5 15.2 95 62-169 74-186 (421)
206 KOG3917 Beta-1,4-galactosyltra 65.6 23 0.00049 28.5 5.8 78 62-169 70-149 (310)
207 KOG2264 Exostosin EXT1L [Signa 64.5 11 0.00023 34.4 4.2 108 65-192 648-760 (907)
208 KOG0799 Branching enzyme [Carb 63.3 56 0.0012 29.1 8.6 105 67-183 104-220 (439)
209 COG1207 GlmU N-acetylglucosami 63.1 1.1E+02 0.0024 27.2 10.7 54 132-185 68-125 (460)
210 PF05045 RgpF: Rhamnan synthes 62.7 25 0.00055 31.9 6.4 79 106-192 1-87 (498)
211 PF01501 Glyco_transf_8: Glyco 62.4 8.9 0.00019 30.4 3.3 75 102-179 29-120 (250)
212 COG3967 DltE Short-chain dehyd 60.1 22 0.00048 28.4 4.8 55 68-138 30-84 (245)
213 PRK00576 molybdopterin-guanine 59.8 74 0.0016 24.0 9.2 53 133-185 47-104 (178)
214 KOG1467 Translation initiation 59.7 68 0.0015 28.9 8.2 58 71-139 362-419 (556)
215 PRK00560 molybdopterin-guanine 59.3 81 0.0018 24.4 9.6 38 141-178 75-113 (196)
216 cd02507 eIF-2B_gamma_N_like Th 58.1 71 0.0015 25.1 7.7 96 71-179 25-124 (216)
217 PF09837 DUF2064: Uncharacteri 57.1 70 0.0015 22.9 7.5 78 101-184 8-88 (122)
218 PRK05293 glgC glucose-1-phosph 56.8 79 0.0017 27.2 8.4 101 71-183 28-142 (380)
219 PRK00725 glgC glucose-1-phosph 54.6 1.5E+02 0.0033 26.1 9.9 101 71-185 40-156 (425)
220 PLN03153 hypothetical protein; 54.1 38 0.00082 30.8 5.9 44 142-185 188-239 (537)
221 TIGR02091 glgC glucose-1-phosp 52.9 72 0.0016 27.2 7.5 101 71-185 23-138 (361)
222 TIGR03291 methan_mark_17 putat 51.4 1.1E+02 0.0025 23.7 8.4 93 76-182 79-183 (185)
223 PRK02862 glgC glucose-1-phosph 49.3 97 0.0021 27.4 7.8 101 71-185 28-143 (429)
224 PF04724 Glyco_transf_17: Glyc 48.4 1.7E+02 0.0038 25.3 8.9 23 156-178 178-200 (356)
225 PF04028 DUF374: Domain of unk 47.9 76 0.0016 20.6 6.3 61 103-168 9-69 (74)
226 PLN03133 beta-1,3-galactosyltr 47.0 2.5E+02 0.0055 26.4 11.5 74 104-179 419-498 (636)
227 PRK00844 glgC glucose-1-phosph 46.4 1.4E+02 0.0031 26.0 8.4 100 71-184 30-143 (407)
228 PRK14359 glmU bifunctional N-a 46.2 1.9E+02 0.0042 25.2 9.3 89 71-179 24-116 (430)
229 KOG4179 Lysyl hydrolase/glycos 46.1 1.1E+02 0.0024 27.1 7.2 78 103-180 34-134 (568)
230 PF09949 DUF2183: Uncharacteri 45.0 1E+02 0.0022 21.3 6.3 29 101-131 62-91 (100)
231 cd02974 AhpF_NTD_N Alkyl hydro 44.6 99 0.0021 21.0 7.0 49 81-139 6-56 (94)
232 PF02434 Fringe: Fringe-like; 44.3 16 0.00034 29.9 1.9 35 155-189 85-119 (252)
233 PF06283 ThuA: Trehalose utili 40.6 1.8E+02 0.0038 22.8 7.4 38 154-191 50-88 (217)
234 PRK15460 cpsB mannose-1-phosph 39.2 3E+02 0.0064 25.0 10.9 89 71-172 31-125 (478)
235 KOG1478 3-keto sterol reductas 38.2 93 0.002 25.9 5.3 67 64-138 29-95 (341)
236 PF05045 RgpF: Rhamnan synthes 37.9 3.2E+02 0.0068 24.9 14.9 117 64-193 263-405 (498)
237 COG2452 Predicted site-specifi 37.3 1.3E+02 0.0028 23.6 5.7 50 65-125 112-163 (193)
238 TIGR00334 5S_RNA_mat_M5 ribonu 37.1 1.7E+02 0.0037 22.6 6.4 26 115-143 35-60 (174)
239 PF01128 IspD: 2-C-methyl-D-er 36.4 2.2E+02 0.0048 22.7 11.1 93 76-185 26-121 (221)
240 PF02590 SPOUT_MTase: Predicte 36.3 1.9E+02 0.004 21.8 10.0 83 104-186 3-97 (155)
241 TIGR00140 hupD hydrogenase exp 36.0 1.5E+02 0.0033 21.2 5.9 41 120-165 3-44 (134)
242 COG1519 KdtA 3-deoxy-D-manno-o 35.4 3.2E+02 0.007 24.3 9.9 90 63-169 47-136 (419)
243 COG0041 PurE Phosphoribosylcar 35.4 1.5E+02 0.0033 22.4 5.7 61 67-139 4-64 (162)
244 COG1861 SpsF Spore coat polysa 34.4 2.5E+02 0.0054 22.7 10.1 99 71-185 22-121 (241)
245 PF13905 Thioredoxin_8: Thiore 34.3 1.3E+02 0.0029 19.6 6.8 62 101-168 33-94 (95)
246 PRK14500 putative bifunctional 34.0 1.9E+02 0.004 24.9 6.9 51 133-183 220-272 (346)
247 COG3510 CmcI Cephalosporin hyd 34.0 2.4E+02 0.0052 22.4 7.4 10 156-165 172-181 (237)
248 PRK10674 deoxyribodipyrimidine 33.9 3.5E+02 0.0076 24.3 9.0 85 80-173 54-139 (472)
249 PLN02241 glucose-1-phosphate a 33.8 3E+02 0.0065 24.3 8.5 101 71-185 28-149 (436)
250 cd01461 vWA_interalpha_trypsin 33.4 1.9E+02 0.0042 21.1 10.0 85 77-166 78-163 (171)
251 PF05073 Baculo_p24: Baculovir 33.3 42 0.00092 25.8 2.5 18 98-115 2-19 (182)
252 KOG2859 DNA repair protein, me 33.0 2.1E+02 0.0045 23.3 6.4 50 132-181 39-96 (293)
253 cd06532 Glyco_transf_25 Glycos 32.1 1.8E+02 0.004 20.6 5.8 72 100-172 24-98 (128)
254 PF00154 RecA: recA bacterial 31.9 1.2E+02 0.0027 25.8 5.4 50 128-177 50-101 (322)
255 PF15224 SCRG1: Scrapie-respon 31.6 36 0.00078 21.6 1.6 13 65-77 66-78 (78)
256 COG2121 Uncharacterized protei 31.2 1.9E+02 0.004 23.1 5.8 57 105-166 69-127 (214)
257 PF03552 Cellulose_synt: Cellu 30.7 81 0.0018 30.0 4.4 38 81-124 18-55 (720)
258 PF01983 CofC: Guanylyl transf 30.7 83 0.0018 25.2 4.0 50 132-182 64-114 (217)
259 COG3510 CmcI Cephalosporin hyd 30.0 2.9E+02 0.0062 22.0 6.9 61 102-169 96-156 (237)
260 cd02537 GT8_Glycogenin Glycoge 29.1 3E+02 0.0065 22.0 7.2 25 154-179 87-111 (240)
261 PF15609 PRTase_2: Phosphoribo 28.3 2.9E+02 0.0064 21.6 7.3 40 104-143 122-163 (191)
262 PF15176 LRR19-TM: Leucine-ric 28.2 2.1E+02 0.0045 19.9 5.9 25 8-32 24-48 (102)
263 PF10794 DUF2606: Protein of u 28.0 97 0.0021 22.2 3.4 54 99-168 54-109 (131)
264 KOG2733 Uncharacterized membra 27.9 4.2E+02 0.0091 23.3 9.0 99 65-183 31-131 (423)
265 cd06327 PBP1_SBP_like_1 Peripl 27.4 2.4E+02 0.0053 23.4 6.6 36 101-139 37-73 (334)
266 PF01008 IF-2B: Initiation fac 27.4 2.7E+02 0.0059 22.8 6.7 80 73-172 112-191 (282)
267 PF05637 Glyco_transf_34: gala 26.5 58 0.0012 26.4 2.5 28 143-170 62-90 (239)
268 PRK13602 putative ribosomal pr 26.1 2E+02 0.0043 19.0 4.9 34 103-139 27-60 (82)
269 COG1358 RPL8A Ribosomal protei 26.1 2.1E+02 0.0046 20.4 5.0 67 103-181 44-112 (116)
270 PRK06620 hypothetical protein; 26.1 3.3E+02 0.0071 21.5 9.0 78 115-193 25-121 (214)
271 TIGR02092 glgD glucose-1-phosp 25.1 2.6E+02 0.0057 23.8 6.5 101 71-183 27-139 (369)
272 KOG1971 Lysyl hydroxylase [Pos 25.0 1.7E+02 0.0037 25.8 5.1 66 114-184 137-203 (415)
273 PRK08485 DNA polymerase III su 24.7 3.6E+02 0.0078 21.4 8.3 78 105-188 6-85 (206)
274 cd03008 TryX_like_RdCVF Trypar 24.6 3E+02 0.0064 20.4 7.3 72 103-180 65-136 (146)
275 PF10236 DAP3: Mitochondrial r 24.5 2.5E+02 0.0054 23.6 6.0 72 115-186 5-98 (309)
276 TIGR00696 wecB_tagA_cpsF bacte 24.0 3.4E+02 0.0073 20.8 9.4 102 83-198 35-139 (177)
277 TIGR03143 AhpF_homolog putativ 23.9 5.7E+02 0.012 23.4 8.7 93 80-184 352-456 (555)
278 KOG3765 Predicted glycosyltran 23.8 1.2E+02 0.0026 26.6 4.0 40 144-183 179-218 (386)
279 cd06337 PBP1_ABC_ligand_bindin 23.8 2.7E+02 0.0059 23.5 6.3 50 103-155 42-92 (357)
280 PF05393 Hum_adeno_E3A: Human 23.7 2.4E+02 0.0051 19.1 4.4 10 23-32 47-56 (94)
281 COG0761 lytB 4-Hydroxy-3-methy 23.3 3E+02 0.0066 23.1 6.0 77 105-183 159-239 (294)
282 PF13768 VWA_3: von Willebrand 23.2 3E+02 0.0064 19.9 8.9 53 79-138 78-131 (155)
283 TIGR02250 FCP1_euk FCP1-like p 23.0 3.3E+02 0.0071 20.3 6.1 34 79-124 61-94 (156)
284 COG0300 DltE Short-chain dehyd 22.7 2.5E+02 0.0053 23.3 5.5 65 68-143 31-95 (265)
285 PRK06683 hypothetical protein; 22.7 2.4E+02 0.0051 18.6 4.9 34 103-139 27-60 (82)
286 PF03129 HGTP_anticodon: Antic 22.6 1.7E+02 0.0037 19.2 3.9 6 158-163 54-59 (94)
287 cd06344 PBP1_ABC_ligand_bindin 22.6 3E+02 0.0065 22.8 6.3 50 101-153 37-87 (332)
288 PF05822 UMPH-1: Pyrimidine 5' 22.5 68 0.0015 26.2 2.1 44 67-124 202-245 (246)
289 cd01393 recA_like RecA is a b 22.4 3.8E+02 0.0081 20.8 7.1 49 132-180 20-76 (226)
290 PF07879 PHB_acc_N: PHB/PHA ac 22.3 2.2E+02 0.0047 18.0 4.3 25 103-127 32-57 (64)
291 COG2425 Uncharacterized protei 22.3 3.7E+02 0.008 24.1 6.7 57 69-129 337-396 (437)
292 PF05545 FixQ: Cbb3-type cytoc 22.1 1.8E+02 0.0038 16.9 4.4 19 14-32 13-31 (49)
293 PF14097 SpoVAE: Stage V sporu 21.2 3.9E+02 0.0085 20.6 9.3 80 106-189 2-85 (180)
294 KOG0189 Phosphoadenosine phosp 21.2 4.4E+02 0.0095 21.1 6.7 93 100-198 68-162 (261)
295 COG0836 {ManC} Mannose-1-phosp 21.2 5.3E+02 0.012 22.1 7.2 94 76-181 32-131 (333)
296 TIGR00177 molyb_syn molybdenum 21.0 2.7E+02 0.0059 20.3 5.0 45 68-124 43-91 (144)
297 PF03727 Hexokinase_2: Hexokin 20.8 4.5E+02 0.0098 21.1 8.1 54 100-153 181-241 (243)
298 PRK13233 nifH nitrogenase redu 20.6 2.2E+02 0.0047 23.2 4.9 38 133-171 5-45 (275)
299 COG0113 HemB Delta-aminolevuli 20.6 5.4E+02 0.012 21.9 7.0 80 73-163 95-195 (330)
300 PF13407 Peripla_BP_4: Peripla 20.4 4.3E+02 0.0092 20.7 10.5 87 68-166 1-89 (257)
301 TIGR03815 CpaE_hom_Actino heli 20.4 4.4E+02 0.0095 22.1 6.8 37 134-170 97-135 (322)
302 PLN00176 galactinol synthase 20.2 2.4E+02 0.0053 24.2 5.1 26 152-178 108-133 (333)
303 cd06533 Glyco_transf_WecG_TagA 20.2 3.9E+02 0.0084 20.2 9.1 101 83-197 33-137 (171)
304 PRK13601 putative L7Ae-like ri 20.1 2.8E+02 0.006 18.4 4.9 27 103-129 24-50 (82)
No 1
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=99.94 E-value=4.2e-25 Score=187.31 Aligned_cols=122 Identities=48% Similarity=0.802 Sum_probs=107.0
Q ss_pred CCCCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHc--CCCcEEEEEcC
Q 027065 62 DPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKY--TVDNVRIILLG 139 (229)
Q Consensus 62 ~~~~p~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~--~~~~i~vi~~~ 139 (229)
....|.+|||||+|||++.|+++|+++.+++....-+++..++|||||||||+|+|.++++++.+++ +..+++++..+
T Consensus 66 ~~~~~~isVVIP~yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~ 145 (333)
T PTZ00260 66 KDSDVDLSIVIPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLL 145 (333)
T ss_pred CCCCeEEEEEEeeCCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcC
Confidence 4567889999999999999999999999877643222334579999999999999999999998775 33369999999
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHH
Q 027065 140 RNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHA 183 (229)
Q Consensus 140 ~~~gk~~a~n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~ 183 (229)
+|.|+++|+|.|++.++||+|+++|+|+..+++.+.++++.+.+
T Consensus 146 ~N~G~~~A~~~Gi~~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~ 189 (333)
T PTZ00260 146 RNKGKGGAVRIGMLASRGKYILMVDADGATDIDDFDKLEDIMLK 189 (333)
T ss_pred CCCChHHHHHHHHHHccCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999976
No 2
>PRK11204 N-glycosyltransferase; Provisional
Probab=99.94 E-value=7.9e-25 Score=191.44 Aligned_cols=124 Identities=24% Similarity=0.368 Sum_probs=113.5
Q ss_pred CCCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCC
Q 027065 63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNH 142 (229)
Q Consensus 63 ~~~p~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~ 142 (229)
...|.+||+||+|||++.+++|++|+.+ |+++++||+||||||+|+|.+.++++.++++ ++++++.++|.
T Consensus 51 ~~~p~vsViIp~yne~~~i~~~l~sl~~--------q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~~--~v~~i~~~~n~ 120 (420)
T PRK11204 51 KEYPGVSILVPCYNEGENVEETISHLLA--------LRYPNYEVIAINDGSSDNTGEILDRLAAQIP--RLRVIHLAENQ 120 (420)
T ss_pred CCCCCEEEEEecCCCHHHHHHHHHHHHh--------CCCCCeEEEEEECCCCccHHHHHHHHHHhCC--cEEEEEcCCCC
Confidence 3457899999999999999999999988 7788999999999999999999999998888 89999988899
Q ss_pred CHHHHHHHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHhCCcceeecccee
Q 027065 143 GKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVT 196 (229)
Q Consensus 143 gk~~a~n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 196 (229)
||+.|+|.|++.+++|+++++|+|+.++|++++++++.++++++.+.+.|....
T Consensus 121 Gka~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v~~v~g~~~~ 174 (420)
T PRK11204 121 GKANALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAVTGNPRI 174 (420)
T ss_pred CHHHHHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCeEEEECCcee
Confidence 999999999999999999999999999999999999999888887776665443
No 3
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=99.93 E-value=3.7e-24 Score=188.37 Aligned_cols=122 Identities=28% Similarity=0.409 Sum_probs=112.3
Q ss_pred CCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCC
Q 027065 64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG 143 (229)
Q Consensus 64 ~~p~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~g 143 (229)
..|.+||+||+|||+..+++|++++.+ |+++++||+||||||+|+|.++++++.++++ ++++++.++|.|
T Consensus 73 ~~p~vsViIP~yNE~~~i~~~l~sll~--------q~yp~~eIivVdDgs~D~t~~~~~~~~~~~~--~v~vv~~~~n~G 142 (444)
T PRK14583 73 GHPLVSILVPCFNEGLNARETIHAALA--------QTYTNIEVIAINDGSSDDTAQVLDALLAEDP--RLRVIHLAHNQG 142 (444)
T ss_pred CCCcEEEEEEeCCCHHHHHHHHHHHHc--------CCCCCeEEEEEECCCCccHHHHHHHHHHhCC--CEEEEEeCCCCC
Confidence 457899999999999999999999988 7788999999999999999999999998887 899999888999
Q ss_pred HHHHHHHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHhCCcceeeccce
Q 027065 144 KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSV 195 (229)
Q Consensus 144 k~~a~n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 195 (229)
|++|+|.|++.+++|+++++|+|+.++|+++.++++.+.++++.+++.|...
T Consensus 143 ka~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~lv~~~~~~~~~g~v~g~~~ 194 (444)
T PRK14583 143 KAIALRMGAAAARSEYLVCIDGDALLDKNAVPYLVAPLIANPRTGAVTGNPR 194 (444)
T ss_pred HHHHHHHHHHhCCCCEEEEECCCCCcCHHHHHHHHHHHHhCCCeEEEEccce
Confidence 9999999999999999999999999999999999999988888777666443
No 4
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=99.93 E-value=3.1e-24 Score=171.11 Aligned_cols=200 Identities=44% Similarity=0.693 Sum_probs=155.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCcccCCCCccccCCCCCCCCCCCCCCCC-CCceEEEEEeecCCCCChHHHHHHHHHHH
Q 027065 14 VVVIILFGLISAIIFEAYRRRDNHAHIEAPAIFEDPSSLKQVPCPSVTDP-AEKYISLIIPAFNEEHRLPGALDETLNYL 92 (229)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~vsviip~~ne~~~l~~~l~sl~~~~ 92 (229)
+...++..++..+++..+..+....+...+.-+..+........|....+ +..-+|||||+|||+..+...++..+..+
T Consensus 14 l~a~v~~~~l~~~l~~~~~~r~~~e~~e~ei~~~d~g~~k~~~lp~~~d~~~~~~lsVIVpaynE~~ri~~mldeav~~l 93 (323)
T KOG2977|consen 14 LVAKVLLKFLSVYLFESHLPRPALENEETEITLDDPGSIKSRTLPNIRDSPEKMYLSVIVPAYNEEGRIGAMLDEAVDYL 93 (323)
T ss_pred HHHHHHHHHHHHHHhhccCCCccccccceEEEEcCCCCccceeCcccccChhhceeEEEEecCCcccchHHHHHHHHHHH
Confidence 33333334344444434444444444444555666565555666655544 33479999999999999999999999999
Q ss_pred HHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHhcCCCEEEEEcCCCCCChh
Q 027065 93 QQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVT 172 (229)
Q Consensus 93 ~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n~gl~~a~~d~v~~lD~D~~~~~~ 172 (229)
...+...+...+|++||||||+|.|.+++-++..++..++++|+...+|+||++|...|+..++|++++|.|+|..-.-.
T Consensus 94 e~ry~~~~~F~~eiiVvddgs~d~T~~~a~k~s~K~~~d~irV~~l~~nrgKGgAvR~g~l~~rG~~ilfadAdGaTkf~ 173 (323)
T KOG2977|consen 94 EKRYLSDKSFTYEIIVVDDGSTDSTVEVALKFSRKLGDDNIRVIKLKKNRGKGGAVRKGMLSSRGQKILFADADGATKFA 173 (323)
T ss_pred HHHhccCCCCceeEEEeCCCCchhHHHHHHHHHHHcCcceEEEeehhccCCCCcceehhhHhccCceEEEEcCCCCccCC
Confidence 88766556679999999999999999999999988877799999999999999999999999999999999999998777
Q ss_pred hHHHHHHHHHHhCCcceeeccceeecCcccccCCCeEEeccccchhh-HHHhhhccCC
Q 027065 173 DLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEE-KALATLKYFT 229 (229)
Q Consensus 173 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~-~~~~~~~~~~ 229 (229)
.++.+.+.+.+... +.......+|||.+++. .+...|+++|
T Consensus 174 d~ekLe~al~~~~~----------------p~~r~~va~GsrahLe~~~a~a~rs~~r 215 (323)
T KOG2977|consen 174 DLEKLEKALNDKAG----------------PGPRDDVACGSRAHLENTEAVAKRSVIR 215 (323)
T ss_pred CHHHHHHHHHhhcC----------------CCCCCceeecCHHHhhccHHHHHHhHhh
Confidence 88888888865321 11123489999999999 9999999875
No 5
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=99.92 E-value=9.1e-24 Score=185.58 Aligned_cols=121 Identities=17% Similarity=0.327 Sum_probs=108.2
Q ss_pred CCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCC--ceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCC
Q 027065 64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSF--TYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRN 141 (229)
Q Consensus 64 ~~p~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~--~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~ 141 (229)
..|.+||+||+|||++.+.+||+|+.+ |+++ .+||+||||||+|+|.++++++.++++ +++++..+++
T Consensus 47 ~~P~vsVIIP~yNe~~~l~~~l~sl~~--------q~yp~~~~eIiVVDd~StD~T~~il~~~~~~~~--~v~v~~~~~~ 116 (439)
T TIGR03111 47 KLPDITIIIPVYNSEDTLFNCIESIYN--------QTYPIELIDIILANNQSTDDSFQVFCRAQNEFP--GLSLRYMNSD 116 (439)
T ss_pred CCCCEEEEEEeCCChHHHHHHHHHHHh--------cCCCCCCeEEEEEECCCChhHHHHHHHHHHhCC--CeEEEEeCCC
Confidence 457899999999999999999999998 4454 479999999999999999999988888 7888777778
Q ss_pred CCHHHHHHHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHhCCcceeeccc
Q 027065 142 HGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDS 194 (229)
Q Consensus 142 ~gk~~a~n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 194 (229)
.||+.|+|.|++.+++|||+++|+|+.++|++++++++.+.++++...+.|..
T Consensus 117 ~Gka~AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~ 169 (439)
T TIGR03111 117 QGKAKALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVI 169 (439)
T ss_pred CCHHHHHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEE
Confidence 99999999999999999999999999999999999999999888776655543
No 6
>PRK10073 putative glycosyl transferase; Provisional
Probab=99.92 E-value=6.8e-24 Score=179.68 Aligned_cols=110 Identities=24% Similarity=0.385 Sum_probs=102.7
Q ss_pred CceEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCH
Q 027065 65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGK 144 (229)
Q Consensus 65 ~p~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk 144 (229)
.|.||||||+||+++.|++||+|+++ |++.++|||||||||+|+|.++++++.++++ ++++++. +|.|.
T Consensus 5 ~p~vSVIIP~yN~~~~L~~~l~Sl~~--------Qt~~~~EIIiVdDgStD~t~~i~~~~~~~~~--~i~vi~~-~n~G~ 73 (328)
T PRK10073 5 TPKLSIIIPLYNAGKDFRAFMESLIA--------QTWTALEIIIVNDGSTDNSVEIAKHYAENYP--HVRLLHQ-ANAGV 73 (328)
T ss_pred CCeEEEEEeccCCHHHHHHHHHHHHh--------CCCCCeEEEEEeCCCCccHHHHHHHHHhhCC--CEEEEEC-CCCCh
Confidence 47899999999999999999999999 7788999999999999999999999998888 8999875 59999
Q ss_pred HHHHHHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHhC
Q 027065 145 GEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVG 185 (229)
Q Consensus 145 ~~a~n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~ 185 (229)
+.|+|.|++.|+||||+|+|+|+.+.|++++.+++.+.+++
T Consensus 74 ~~arN~gl~~a~g~yi~flD~DD~~~p~~l~~l~~~~~~~~ 114 (328)
T PRK10073 74 SVARNTGLAVATGKYVAFPDADDVVYPTMYETLMTMALEDD 114 (328)
T ss_pred HHHHHHHHHhCCCCEEEEECCCCccChhHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999887644
No 7
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=99.91 E-value=4.5e-23 Score=177.77 Aligned_cols=120 Identities=16% Similarity=0.189 Sum_probs=105.2
Q ss_pred CCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCC
Q 027065 64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG 143 (229)
Q Consensus 64 ~~p~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~g 143 (229)
..|.|||+||+|||++.+++||+|+.+ |+|+++|||++||+|+|.|.++++++.+++|..+++++..+++.|
T Consensus 39 ~~p~VSViiP~~nee~~l~~~L~Sl~~--------q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~~~~G 110 (373)
T TIGR03472 39 AWPPVSVLKPLHGDEPELYENLASFCR--------QDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDARRHG 110 (373)
T ss_pred CCCCeEEEEECCCCChhHHHHHHHHHh--------cCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEECCCCCC
Confidence 357799999999999999999999999 788899999999999999999999999999855688887665554
Q ss_pred ---HHHHHHHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHhCCcceeec
Q 027065 144 ---KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHG 192 (229)
Q Consensus 144 ---k~~a~n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~ 192 (229)
|..+++.+++.+++|+++|+|+|+.++|++|+++++.++ +++.+.+.+
T Consensus 111 ~~~K~~~l~~~~~~a~ge~i~~~DaD~~~~p~~L~~lv~~~~-~~~v~~V~~ 161 (373)
T TIGR03472 111 PNRKVSNLINMLPHARHDILVIADSDISVGPDYLRQVVAPLA-DPDVGLVTC 161 (373)
T ss_pred CChHHHHHHHHHHhccCCEEEEECCCCCcChhHHHHHHHHhc-CCCcceEec
Confidence 778888899999999999999999999999999999996 455554444
No 8
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=99.91 E-value=4.2e-23 Score=162.60 Aligned_cols=119 Identities=18% Similarity=0.235 Sum_probs=102.0
Q ss_pred ceEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCC--
Q 027065 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG-- 143 (229)
Q Consensus 66 p~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~g-- 143 (229)
|.||||||+|||+..++++|+|+.+ |.++++|||||||+|+|+|.++++++.++++..+++++..+.+.|
T Consensus 1 p~vsviip~~n~~~~l~~~L~sl~~--------q~~~~~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 72 (196)
T cd02520 1 PGVSILKPLCGVDPNLYENLESFFQ--------QDYPKYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEKVGIN 72 (196)
T ss_pred CCeEEEEecCCCCccHHHHHHHHHh--------ccCCCeEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCCcCCCC
Confidence 4699999999999999999999998 667789999999999999999999998888744566777665544
Q ss_pred -HHHHHHHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHhCCcceeecc
Q 027065 144 -KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGD 193 (229)
Q Consensus 144 -k~~a~n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~ 193 (229)
++.++|.|++.++|||++|+|+|+.++|++|+++++.+. .++.+++.|.
T Consensus 73 ~~~~~~n~g~~~a~~d~i~~~D~D~~~~~~~l~~l~~~~~-~~~~~~v~~~ 122 (196)
T cd02520 73 PKVNNLIKGYEEARYDILVISDSDISVPPDYLRRMVAPLM-DPGVGLVTCL 122 (196)
T ss_pred HhHHHHHHHHHhCCCCEEEEECCCceEChhHHHHHHHHhh-CCCCCeEEee
Confidence 567899999999999999999999999999999999985 4455554443
No 9
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=99.91 E-value=6.8e-23 Score=177.26 Aligned_cols=115 Identities=28% Similarity=0.361 Sum_probs=101.8
Q ss_pred CCCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCC-ceEEEEEECCCCcchHHHHHHHHHHcCC-CcEEEEEcCC
Q 027065 63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSF-TYEVLIIDDGSSDGTKRVAFDFVRKYTV-DNVRIILLGR 140 (229)
Q Consensus 63 ~~~p~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~-~~eiivvdd~s~d~t~~~~~~~~~~~~~-~~i~vi~~~~ 140 (229)
+..|+||||||+|||++.|++||+|+.+ |+++ ++|||||||+|+|+|.++++++.++++. +++++++.++
T Consensus 37 ~~~p~VSVIIpa~Ne~~~L~~~L~sL~~--------q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~~~~ 108 (384)
T TIGR03469 37 EAWPAVVAVVPARNEADVIGECVTSLLE--------QDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQP 108 (384)
T ss_pred CCCCCEEEEEecCCcHhHHHHHHHHHHh--------CCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEecCCC
Confidence 4567899999999999999999999998 6666 6999999999999999999999887763 2688887532
Q ss_pred ----CCCHHHHHHHHHHhcC-----CCEEEEEcCCCCCChhhHHHHHHHHHHhC
Q 027065 141 ----NHGKGEAIRKGMLHSR-----GELLLMLDADGATKVTDLEKLESQIHAVG 185 (229)
Q Consensus 141 ----~~gk~~a~n~gl~~a~-----~d~v~~lD~D~~~~~~~l~~l~~~~~~~~ 185 (229)
+.||..|+|.|++.++ +|+++|+|+|+.++|++++++++.+++.+
T Consensus 109 ~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~ 162 (384)
T TIGR03469 109 LPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEG 162 (384)
T ss_pred CCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCC
Confidence 3689999999999999 99999999999999999999999998754
No 10
>PRK10018 putative glycosyl transferase; Provisional
Probab=99.90 E-value=7.3e-23 Score=169.38 Aligned_cols=120 Identities=17% Similarity=0.256 Sum_probs=105.9
Q ss_pred CceEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCH
Q 027065 65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGK 144 (229)
Q Consensus 65 ~p~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk 144 (229)
.|.||||||+||+++.+.++|+|+++ |+++++|||||||||++ .+.++++..++..++++++..+.|.|.
T Consensus 4 ~p~VSVIip~yN~~~~l~~~l~Svl~--------Qt~~~~EiIVVDDgS~~--~~~~~~~~~~~~~~ri~~i~~~~n~G~ 73 (279)
T PRK10018 4 NPLISIYMPTWNRQQLAIRAIKSVLR--------QDYSNWEMIIVDDCSTS--WEQLQQYVTALNDPRITYIHNDINSGA 73 (279)
T ss_pred CCEEEEEEEeCCCHHHHHHHHHHHHh--------CCCCCeEEEEEECCCCC--HHHHHHHHHHcCCCCEEEEECCCCCCH
Confidence 57899999999999999999999999 77889999999999984 566777776654458999999999999
Q ss_pred HHHHHHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHhCCcceeeccc
Q 027065 145 GEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDS 194 (229)
Q Consensus 145 ~~a~n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 194 (229)
+.|+|.|++.|+|+||+|+|+|+.+.|+.|+.+++.+.+.+.....+++.
T Consensus 74 ~~a~N~gi~~a~g~~I~~lDaDD~~~p~~l~~~~~~~~~~~~~~~~~~~~ 123 (279)
T PRK10018 74 CAVRNQAIMLAQGEYITGIDDDDEWTPNRLSVFLAHKQQLVTHAFLYAND 123 (279)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCccHHHHHHHHHHhCCCccEEEccc
Confidence 99999999999999999999999999999999999998766666666553
No 11
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=99.90 E-value=1.3e-22 Score=165.04 Aligned_cols=123 Identities=24% Similarity=0.387 Sum_probs=106.0
Q ss_pred CCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCC
Q 027065 64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG 143 (229)
Q Consensus 64 ~~p~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~g 143 (229)
..|++|||||+|||++.|+.+++++.++.. +..++|||||||||+|+|.++++++..+++...+.++..++|.|
T Consensus 7 ~~~~vsVvIp~yne~~~l~~~l~~l~~~~~------~~~~~eiivvDdgS~D~t~~i~~~~~~~~~~~~v~~~~~~~n~G 80 (243)
T PLN02726 7 GAMKYSIIVPTYNERLNIALIVYLIFKALQ------DVKDFEIIVVDDGSPDGTQDVVKQLQKVYGEDRILLRPRPGKLG 80 (243)
T ss_pred CCceEEEEEccCCchhhHHHHHHHHHHHhc------cCCCeEEEEEeCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCCC
Confidence 457899999999999999999888876442 34489999999999999999999998887655788888888999
Q ss_pred HHHHHHHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHhCCcceeecc
Q 027065 144 KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGD 193 (229)
Q Consensus 144 k~~a~n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~ 193 (229)
+++|+|.|++.++|||++++|+|+.++|++++++++.+.+. +..++.|.
T Consensus 81 ~~~a~n~g~~~a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~-~~~~v~g~ 129 (243)
T PLN02726 81 LGTAYIHGLKHASGDFVVIMDADLSHHPKYLPSFIKKQRET-GADIVTGT 129 (243)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCCCCCCHHHHHHHHHHHHhc-CCcEEEEc
Confidence 99999999999999999999999999999999999998664 33334443
No 12
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=99.89 E-value=1e-22 Score=165.34 Aligned_cols=118 Identities=15% Similarity=0.220 Sum_probs=98.4
Q ss_pred ceEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCC--ceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCC
Q 027065 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSF--TYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG 143 (229)
Q Consensus 66 p~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~--~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~g 143 (229)
|.+|||||+|||++.|.++|+|+.+ |+++ .+|||||||+|+|+|.++++++... +..++.++....+.|
T Consensus 1 p~vsIiIp~~Ne~~~l~~~l~sl~~--------~~y~~~~~eiivVdd~s~d~t~~i~~~~~~~-~~~~i~~~~~~~~~G 71 (241)
T cd06427 1 PVYTILVPLYKEAEVLPQLIASLSA--------LDYPRSKLDVKLLLEEDDEETIAAARALRLP-SIFRVVVVPPSQPRT 71 (241)
T ss_pred CeEEEEEecCCcHHHHHHHHHHHHh--------CcCCcccEEEEEEECCCCchHHHHHHHhccC-CCeeEEEecCCCCCc
Confidence 5799999999999999999999988 4444 4899999999999999999887532 112455555556789
Q ss_pred HHHHHHHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHh-CCcceeec
Q 027065 144 KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAV-GRKEYNHG 192 (229)
Q Consensus 144 k~~a~n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~-~~~~~~~~ 192 (229)
+++|+|.|++.++||||+++|+|+.++|+++.++++.+.+. ++.+++.+
T Consensus 72 ~~~a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~ 121 (241)
T cd06427 72 KPKACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQA 121 (241)
T ss_pred hHHHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeC
Confidence 99999999999999999999999999999999999999865 44444333
No 13
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.89 E-value=1.5e-22 Score=160.46 Aligned_cols=120 Identities=23% Similarity=0.307 Sum_probs=107.8
Q ss_pred EEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHH
Q 027065 69 SLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAI 148 (229)
Q Consensus 69 sviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~ 148 (229)
|||||+||+++.|+++|+|+.+ |+++++|||||||||+|+|.++++++..+++ ..++++..+++.|++.++
T Consensus 1 sIvIp~yn~~~~l~~~l~sl~~--------q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~-~~~~~~~~~~~~G~~~~~ 71 (214)
T cd04196 1 AVLMATYNGEKYLREQLDSILA--------QTYKNDELIISDDGSTDGTVEIIKEYIDKDP-FIIILIRNGKNLGVARNF 71 (214)
T ss_pred CEEEEecCcHHHHHHHHHHHHh--------CcCCCeEEEEEeCCCCCCcHHHHHHHHhcCC-ceEEEEeCCCCccHHHHH
Confidence 6899999999999999999999 6677899999999999999999999998876 467888888899999999
Q ss_pred HHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHhCCcceeeccceee
Q 027065 149 RKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTV 197 (229)
Q Consensus 149 n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 197 (229)
|.|+..++||||+++|+|+.+.|+++.++++.+...+...+..+.....
T Consensus 72 n~g~~~~~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 120 (214)
T cd04196 72 ESLLQAADGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLELV 120 (214)
T ss_pred HHHHHhCCCCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecCcEEE
Confidence 9999999999999999999999999999999977777776666655443
No 14
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.89 E-value=2.2e-22 Score=158.51 Aligned_cols=119 Identities=24% Similarity=0.379 Sum_probs=106.6
Q ss_pred EEEEeecCCC--CChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCC-CcchHHHHHHHHHHcCCCcEEEEEcCCCCCHH
Q 027065 69 SLIIPAFNEE--HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGS-SDGTKRVAFDFVRKYTVDNVRIILLGRNHGKG 145 (229)
Q Consensus 69 sviip~~ne~--~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s-~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~ 145 (229)
||+||+||++ +.+++||+|+.+ |+++++||||||||| +|.|.++++++.++++ ++++..++|.|++
T Consensus 1 sviip~~n~~~~~~l~~~l~Sl~~--------q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~~---i~~i~~~~n~G~~ 69 (201)
T cd04195 1 SVLMSVYIKEKPEFLREALESILK--------QTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLP---LKVVPLEKNRGLG 69 (201)
T ss_pred CEEEEccccchHHHHHHHHHHHHh--------cCCCCcEEEEEECCCCchhHHHHHHHHHhcCC---eEEEEcCccccHH
Confidence 6999999998 489999999999 677789999999998 7889999999887765 8889988899999
Q ss_pred HHHHHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHhCCcceeeccceeec
Q 027065 146 EAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVD 198 (229)
Q Consensus 146 ~a~n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 198 (229)
.|+|.|++.++|||++|+|+|+.++|++++.+++.++++++..++.|.....+
T Consensus 70 ~a~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 122 (201)
T cd04195 70 KALNEGLKHCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFD 122 (201)
T ss_pred HHHHHHHHhcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEEC
Confidence 99999999999999999999999999999999999998888877777655543
No 15
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.89 E-value=4.7e-22 Score=156.58 Aligned_cols=121 Identities=20% Similarity=0.313 Sum_probs=106.1
Q ss_pred ceEEEEEeecCCC-CChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchH-HHHHHHHHHcCCCcEEEEEcCCCCC
Q 027065 66 KYISLIIPAFNEE-HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTK-RVAFDFVRKYTVDNVRIILLGRNHG 143 (229)
Q Consensus 66 p~vsviip~~ne~-~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~-~~~~~~~~~~~~~~i~vi~~~~~~g 143 (229)
|++|||||+||++ +.+++||+|+.+ |+++++|||||||||+|++. ++++.+..+.+ .++++..+++.|
T Consensus 1 p~vsiii~~~n~~~~~l~~~l~sl~~--------q~~~~~eiivvd~gs~d~~~~~~~~~~~~~~~--~~~~~~~~~~~g 70 (202)
T cd04184 1 PLISIVMPVYNTPEKYLREAIESVRA--------QTYPNWELCIADDASTDPEVKRVLKKYAAQDP--RIKVVFREENGG 70 (202)
T ss_pred CeEEEEEecccCcHHHHHHHHHHHHh--------CcCCCeEEEEEeCCCCChHHHHHHHHHHhcCC--CEEEEEcccCCC
Confidence 4699999999999 999999999999 67778999999999999755 56666666666 788888888999
Q ss_pred HHHHHHHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHhCCcceeecccee
Q 027065 144 KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVT 196 (229)
Q Consensus 144 k~~a~n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 196 (229)
.+.++|.|++.+++||++++|+|+.++|++++++++.+...++..+++++...
T Consensus 71 ~~~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~ 123 (202)
T cd04184 71 ISAATNSALELATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDEDK 123 (202)
T ss_pred HHHHHHHHHHhhcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccHHh
Confidence 99999999999999999999999999999999999999777777776665443
No 16
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=99.89 E-value=2.6e-22 Score=152.21 Aligned_cols=111 Identities=29% Similarity=0.475 Sum_probs=97.3
Q ss_pred EEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHH
Q 027065 69 SLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAI 148 (229)
Q Consensus 69 sviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~ 148 (229)
|||||+||+++.+.++|+|+.+ |+..++|||||||||+|++.++++++.+... +++++..+++.|++.++
T Consensus 1 Svvip~~n~~~~l~~~l~sl~~--------q~~~~~eiivvdd~s~d~~~~~~~~~~~~~~--~i~~i~~~~n~g~~~~~ 70 (169)
T PF00535_consen 1 SVVIPTYNEAEYLERTLESLLK--------QTDPDFEIIVVDDGSTDETEEILEEYAESDP--NIRYIRNPENLGFSAAR 70 (169)
T ss_dssp EEEEEESS-TTTHHHHHHHHHH--------HSGCEEEEEEEECS-SSSHHHHHHHHHCCST--TEEEEEHCCCSHHHHHH
T ss_pred CEEEEeeCCHHHHHHHHHHHhh--------ccCCCEEEEEecccccccccccccccccccc--ccccccccccccccccc
Confidence 7999999999999999999999 4567899999999999999999999987333 89999999999999999
Q ss_pred HHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHhCCcce
Q 027065 149 RKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEY 189 (229)
Q Consensus 149 n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~ 189 (229)
|.|++.++++|++++|+|+.+.+++++++++.+++.+....
T Consensus 71 n~~~~~a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~ 111 (169)
T PF00535_consen 71 NRGIKHAKGEYILFLDDDDIISPDWLEELVEALEKNPPDVV 111 (169)
T ss_dssp HHHHHH--SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEE
T ss_pred cccccccceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEE
Confidence 99999999999999999999999999999999999665443
No 17
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=99.88 E-value=2.9e-22 Score=159.36 Aligned_cols=111 Identities=48% Similarity=0.841 Sum_probs=100.1
Q ss_pred EEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHH
Q 027065 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR 149 (229)
Q Consensus 70 viip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n 149 (229)
||||+||+++.++++|+++.++... |+..++|||||||||+|+|.++++++.++++. .++++..++|.|+++|+|
T Consensus 1 iiip~yN~~~~l~~~l~~l~~~~~~----~~~~~~eiivvdd~S~D~t~~~~~~~~~~~~~-~i~~i~~~~n~G~~~a~~ 75 (211)
T cd04188 1 VVIPAYNEEKRLPPTLEEAVEYLEE----RPSFSYEIIVVDDGSKDGTAEVARKLARKNPA-LIRVLTLPKNRGKGGAVR 75 (211)
T ss_pred CEEcccChHHHHHHHHHHHHHHHhc----cCCCCEEEEEEeCCCCCchHHHHHHHHHhCCC-cEEEEEcccCCCcHHHHH
Confidence 6999999999999999999997664 35568999999999999999999999888772 258999888999999999
Q ss_pred HHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHhC
Q 027065 150 KGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVG 185 (229)
Q Consensus 150 ~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~ 185 (229)
.|++.|++|||+++|+|+.++|+++.++++.+.+.+
T Consensus 76 ~g~~~a~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~ 111 (211)
T cd04188 76 AGMLAARGDYILFADADLATPFEELEKLEEALKTSG 111 (211)
T ss_pred HHHHHhcCCEEEEEeCCCCCCHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999975543
No 18
>PRK10063 putative glycosyl transferase; Provisional
Probab=99.88 E-value=9.6e-22 Score=160.42 Aligned_cols=120 Identities=21% Similarity=0.334 Sum_probs=97.4
Q ss_pred ceEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHH
Q 027065 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKG 145 (229)
Q Consensus 66 p~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~ 145 (229)
|.+|||||+||+++.++++|+|+.++.. |++.++|||||||||+|+|.++++++.++. +++++..+ +.|.+
T Consensus 1 ~~vSVIi~~yN~~~~l~~~l~sl~~~~~-----~~~~~~EiIVvDdgStD~t~~i~~~~~~~~---~i~~i~~~-~~G~~ 71 (248)
T PRK10063 1 MLLSVITVAFRNLEGIVKTHASLRHLAQ-----DPGISFEWIVVDGGSNDGTREFLENLNGIF---NLRFVSEP-DNGIY 71 (248)
T ss_pred CeEEEEEEeCCCHHHHHHHHHHHHHHHh-----CCCCCEEEEEEECcCcccHHHHHHHhcccC---CEEEEECC-CCCHH
Confidence 5799999999999999999999987543 456789999999999999999999875442 47888764 77999
Q ss_pred HHHHHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHhCCcceeeccce
Q 027065 146 EAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSV 195 (229)
Q Consensus 146 ~a~n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 195 (229)
.|+|.|++.|+||||+++|+|+.+.|+.++. +..+...+....++|...
T Consensus 72 ~A~N~Gi~~a~g~~v~~ld~DD~~~~~~~~~-~~~~~~~~~~~~v~g~~~ 120 (248)
T PRK10063 72 DAMNKGIAMAQGRFALFLNSGDIFHQDAANF-VRQLKMQKDNAMIIGDAL 120 (248)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcccCcCHHHH-HHHHHhCCCCeEEEeeeE
Confidence 9999999999999999999999999987654 444444444444555543
No 19
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=99.88 E-value=1.8e-21 Score=164.65 Aligned_cols=118 Identities=31% Similarity=0.464 Sum_probs=102.0
Q ss_pred CceEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCH
Q 027065 65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGK 144 (229)
Q Consensus 65 ~p~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk 144 (229)
.+++|||||+|||++.++++++++.+.+. |...++|||||||||+|+|.++++++.++.. .++..+..+.|.|+
T Consensus 5 ~~~vSVVIP~yNE~~~i~~~l~~l~~~~~-----~~~~~~EIIvVDDgS~D~T~~il~~~~~~~~-~~v~~i~~~~n~G~ 78 (325)
T PRK10714 5 IKKVSVVIPVYNEQESLPELIRRTTAACE-----SLGKEYEILLIDDGSSDNSAEMLVEAAQAPD-SHIVAILLNRNYGQ 78 (325)
T ss_pred CCeEEEEEcccCchhhHHHHHHHHHHHHH-----hCCCCEEEEEEeCCCCCcHHHHHHHHHhhcC-CcEEEEEeCCCCCH
Confidence 45699999999999999999999877554 3345799999999999999999998876533 25666677789999
Q ss_pred HHHHHHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHhCCcc
Q 027065 145 GEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKE 188 (229)
Q Consensus 145 ~~a~n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~ 188 (229)
+.|+|.|++.|+||+++++|+|+..+|+++.++++.++++.+.+
T Consensus 79 ~~A~~~G~~~A~gd~vv~~DaD~q~~p~~i~~l~~~~~~~~DvV 122 (325)
T PRK10714 79 HSAIMAGFSHVTGDLIITLDADLQNPPEEIPRLVAKADEGYDVV 122 (325)
T ss_pred HHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHhhCCEE
Confidence 99999999999999999999999999999999999998665533
No 20
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=99.88 E-value=1.8e-21 Score=158.61 Aligned_cols=123 Identities=24% Similarity=0.413 Sum_probs=106.0
Q ss_pred CCCCCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCc--eEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEc
Q 027065 61 TDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFT--YEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILL 138 (229)
Q Consensus 61 ~~~~~p~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~--~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~ 138 (229)
.....|++|||||+||++..++++|+++.+ |.+++ +||||+||||+|+|.++++++.+. +++++..
T Consensus 24 ~~~~~~~isVvip~~n~~~~l~~~l~si~~--------q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~----~v~~i~~ 91 (251)
T cd06439 24 DPAYLPTVTIIIPAYNEEAVIEAKLENLLA--------LDYPRDRLEIIVVSDGSTDGTAEIAREYADK----GVKLLRF 91 (251)
T ss_pred CCCCCCEEEEEEecCCcHHHHHHHHHHHHh--------CcCCCCcEEEEEEECCCCccHHHHHHHHhhC----cEEEEEc
Confidence 334577899999999999999999999988 45544 899999999999999999988654 4888888
Q ss_pred CCCCCHHHHHHHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHhCCcceeecccee
Q 027065 139 GRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVT 196 (229)
Q Consensus 139 ~~~~gk~~a~n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 196 (229)
+++.|++.|+|.|++.+++||++|+|+|+.+.+++++++++.+++ ++..++.+....
T Consensus 92 ~~~~g~~~a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~-~~~~~v~~~~~~ 148 (251)
T cd06439 92 PERRGKAAALNRALALATGEIVVFTDANALLDPDALRLLVRHFAD-PSVGAVSGELVI 148 (251)
T ss_pred CCCCChHHHHHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcC-CCccEEEeEEEe
Confidence 889999999999999999999999999999999999999999963 455555554443
No 21
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=99.87 E-value=2e-21 Score=156.70 Aligned_cols=119 Identities=24% Similarity=0.327 Sum_probs=97.9
Q ss_pred ceEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCC--ceEEEEEECCCCcchHHHHHHHHHHcC--CCcEEEEEcCCC
Q 027065 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSF--TYEVLIIDDGSSDGTKRVAFDFVRKYT--VDNVRIILLGRN 141 (229)
Q Consensus 66 p~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~--~~eiivvdd~s~d~t~~~~~~~~~~~~--~~~i~vi~~~~~ 141 (229)
|+||||||+|||++.|.++|+|+.+ |+++ .+||||+|| |+|+|.++++++..++. ..+++++...++
T Consensus 1 p~vSViIp~yNe~~~l~~~L~sl~~--------q~~~~~~~eIiVvD~-s~D~t~~~~~~~~~~~~~~~~~i~~~~~~~~ 71 (232)
T cd06437 1 PMVTVQLPVFNEKYVVERLIEAACA--------LDYPKDRLEIQVLDD-STDETVRLAREIVEEYAAQGVNIKHVRRADR 71 (232)
T ss_pred CceEEEEecCCcHHHHHHHHHHHHh--------cCCCccceEEEEEEC-CCCcHHHHHHHHHHHHhhcCCceEEEECCCC
Confidence 4699999999999999999999988 4444 589999998 99999999998876543 235777766666
Q ss_pred CC-HHHHHHHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHhCCcceeeccc
Q 027065 142 HG-KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDS 194 (229)
Q Consensus 142 ~g-k~~a~n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 194 (229)
.| |+.|+|.|++.++||||+++|+|+.++|++|+++...+ .+++.+.+.+..
T Consensus 72 ~G~k~~a~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~~-~~~~v~~v~~~~ 124 (232)
T cd06437 72 TGYKAGALAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYF-ADPKLGFVQTRW 124 (232)
T ss_pred CCCchHHHHHHHHhCCCCEEEEEcCCCCCChHHHHHhhhhh-cCCCeEEEecce
Confidence 67 78999999999999999999999999999999977666 456665555543
No 22
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=99.87 E-value=2.4e-21 Score=155.79 Aligned_cols=117 Identities=19% Similarity=0.273 Sum_probs=100.7
Q ss_pred ceEEEEEeecCCC-CChHHHHHHHHHHHHHhhhhcCCCc--eEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCC
Q 027065 66 KYISLIIPAFNEE-HRLPGALDETLNYLQQRAAKDKSFT--YEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNH 142 (229)
Q Consensus 66 p~vsviip~~ne~-~~l~~~l~sl~~~~~~~~~~~~~~~--~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~ 142 (229)
|.||||||+||++ ..++++|+|+++ |++++ +|||||||||+|+|.++++++..+++ ++++..+.+.
T Consensus 1 p~vsviip~~n~~~~~l~~~l~sl~~--------q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~---~~~~~~~~~~ 69 (234)
T cd06421 1 PTVDVFIPTYNEPLEIVRKTLRAALA--------IDYPHDKLRVYVLDDGRRPELRALAAELGVEYG---YRYLTRPDNR 69 (234)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHh--------cCCCcccEEEEEEcCCCchhHHHHHHHhhcccC---ceEEEeCCCC
Confidence 4699999999987 578999999998 66777 99999999999999999999876653 5666666555
Q ss_pred C-HHHHHHHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHhCCcceeecc
Q 027065 143 G-KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGD 193 (229)
Q Consensus 143 g-k~~a~n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~ 193 (229)
| +++++|.|++.+++||++++|+|+.++|++++++++.+.++++...+.+.
T Consensus 70 ~~~~~~~n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~ 121 (234)
T cd06421 70 HAKAGNLNNALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTP 121 (234)
T ss_pred CCcHHHHHHHHHhCCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecc
Confidence 4 78899999999999999999999999999999999999887776665554
No 23
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=99.87 E-value=2.4e-21 Score=162.28 Aligned_cols=114 Identities=23% Similarity=0.277 Sum_probs=97.2
Q ss_pred EEEEeecCCC-CChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHH
Q 027065 69 SLIIPAFNEE-HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEA 147 (229)
Q Consensus 69 sviip~~ne~-~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a 147 (229)
|||||+||++ +.+++||+|+.++.. +...+|||||||||+|+|.+.+.+.......++++++..++|.|.+.|
T Consensus 1 SIIIp~~N~~~~~l~~~l~Sl~~~~~------~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~vi~~~~n~G~~~a 74 (299)
T cd02510 1 SVIIIFHNEALSTLLRTVHSVINRTP------PELLKEIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKKREGLIRA 74 (299)
T ss_pred CEEEEEecCcHHHHHHHHHHHHhcCc------hhcCCEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEEcCCCCCHHHH
Confidence 6999999999 999999999998322 112469999999999999998876322211237999999999999999
Q ss_pred HHHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHhCCcc
Q 027065 148 IRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKE 188 (229)
Q Consensus 148 ~n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~ 188 (229)
+|.|++.|+||||+|+|+|+.+.|+||++|++.+.+++...
T Consensus 75 ~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~ 115 (299)
T cd02510 75 RIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTV 115 (299)
T ss_pred HHHHHHHccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeE
Confidence 99999999999999999999999999999999998876543
No 24
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=99.86 E-value=4.9e-21 Score=153.13 Aligned_cols=112 Identities=21% Similarity=0.270 Sum_probs=97.8
Q ss_pred EEEeecCCCCChHHHHHHHHHHHHHhhhhcCCC-ceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEc----CCCCCH
Q 027065 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSF-TYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILL----GRNHGK 144 (229)
Q Consensus 70 viip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~-~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~----~~~~gk 144 (229)
||||+||+++.|++||+|+.+ |+++ ++|||||||||+|+|.++++++..+++..+++++.. +.+.|.
T Consensus 1 ViIp~yn~~~~l~~~l~sl~~--------q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 72 (219)
T cd06913 1 IILPVHNGEQWLDECLESVLQ--------QDFEGTLELSVFNDASTDKSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGV 72 (219)
T ss_pred CEEeecCcHHHHHHHHHHHHh--------CCCCCCEEEEEEeCCCCccHHHHHHHHHHhCcccCeEEEEecccCCCCccH
Confidence 689999999999999999998 5555 699999999999999999999988876446777653 346899
Q ss_pred HHHHHHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHhCCcce
Q 027065 145 GEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEY 189 (229)
Q Consensus 145 ~~a~n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~ 189 (229)
+.|+|.|++.++|||++|+|+|+.+.|+++++++..+.+++...+
T Consensus 73 ~~a~N~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v 117 (219)
T cd06913 73 GYAKNQAIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSII 117 (219)
T ss_pred HHHHHHHHHhcCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEE
Confidence 999999999999999999999999999999999999987665443
No 25
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=99.86 E-value=4.9e-21 Score=153.12 Aligned_cols=106 Identities=27% Similarity=0.533 Sum_probs=96.9
Q ss_pred EEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHH
Q 027065 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR 149 (229)
Q Consensus 70 viip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n 149 (229)
||||+||++..|+++|+++.++.. ..++|||||||||+|+|.++++++.++++ .++++..+++.|++.|+|
T Consensus 1 ViIp~yn~~~~l~~~l~sl~~q~~-------~~~~eiiiVDd~S~d~t~~~~~~~~~~~~--~i~~~~~~~n~G~~~a~n 71 (224)
T cd06442 1 IIIPTYNERENIPELIERLDAALK-------GIDYEIIVVDDNSPDGTAEIVRELAKEYP--RVRLIVRPGKRGLGSAYI 71 (224)
T ss_pred CeEeccchhhhHHHHHHHHHHhhc-------CCCeEEEEEeCCCCCChHHHHHHHHHhCC--ceEEEecCCCCChHHHHH
Confidence 689999999999999999998432 15799999999999999999999988877 789999899999999999
Q ss_pred HHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHh
Q 027065 150 KGMLHSRGELLLMLDADGATKVTDLEKLESQIHAV 184 (229)
Q Consensus 150 ~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~ 184 (229)
.|++.|++|+|+|+|+|+.+.|+++..+++.+.+.
T Consensus 72 ~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~ 106 (224)
T cd06442 72 EGFKAARGDVIVVMDADLSHPPEYIPELLEAQLEG 106 (224)
T ss_pred HHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999997543
No 26
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=99.86 E-value=6.8e-21 Score=147.80 Aligned_cols=112 Identities=26% Similarity=0.476 Sum_probs=101.1
Q ss_pred EEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHH
Q 027065 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR 149 (229)
Q Consensus 70 viip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n 149 (229)
||||+||+++.+.++++++.++.. |++.++|||||||||+|+|.++++++.++++ +++++...+|.|++.|+|
T Consensus 1 viIp~~n~~~~l~~~l~sl~~~~~-----~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~--~i~~i~~~~n~G~~~a~n 73 (181)
T cd04187 1 IVVPVYNEEENLPELYERLKAVLE-----SLGYDYEIIFVDDGSTDRTLEILRELAARDP--RVKVIRLSRNFGQQAALL 73 (181)
T ss_pred CEEeecCchhhHHHHHHHHHHHHH-----hcCCCeEEEEEeCCCCccHHHHHHHHHhhCC--CEEEEEecCCCCcHHHHH
Confidence 689999999999999999988765 3566899999999999999999999988877 899999888999999999
Q ss_pred HHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHhCCcc
Q 027065 150 KGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKE 188 (229)
Q Consensus 150 ~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~ 188 (229)
.|++.+++||++++|+|+.+++++++++++.+.+..+.+
T Consensus 74 ~g~~~a~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~v 112 (181)
T cd04187 74 AGLDHARGDAVITMDADLQDPPELIPEMLAKWEEGYDVV 112 (181)
T ss_pred HHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHhCCCcEE
Confidence 999999999999999999999999999999976554443
No 27
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=99.86 E-value=4.3e-20 Score=170.62 Aligned_cols=119 Identities=25% Similarity=0.351 Sum_probs=99.4
Q ss_pred CCCceEEEEEeecCCCCC-hHHHHHHHHHHHHHhhhhcCCC--ceEEEEEECCCCcch--------------HHHHHHHH
Q 027065 63 PAEKYISLIIPAFNEEHR-LPGALDETLNYLQQRAAKDKSF--TYEVLIIDDGSSDGT--------------KRVAFDFV 125 (229)
Q Consensus 63 ~~~p~vsviip~~ne~~~-l~~~l~sl~~~~~~~~~~~~~~--~~eiivvdd~s~d~t--------------~~~~~~~~ 125 (229)
+..|.|||+||+|||+.. ++++++++.+ ++|+ ++||+|+||||+|+| .+.+++++
T Consensus 128 ~~~P~VsViIP~yNE~~~iv~~tl~s~~~--------~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~ 199 (713)
T TIGR03030 128 EEWPTVDVFIPTYNEDLEIVATTVLAAKN--------MDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFC 199 (713)
T ss_pred ccCCeeEEEEcCCCCCHHHHHHHHHHHHh--------CCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHH
Confidence 456789999999999964 4678988877 4555 799999999999987 34566666
Q ss_pred HHcCCCcEEEEEcCCC-CCHHHHHHHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHhCCcceeec
Q 027065 126 RKYTVDNVRIILLGRN-HGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHG 192 (229)
Q Consensus 126 ~~~~~~~i~vi~~~~~-~gk~~a~n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~ 192 (229)
++. +++++..++| .+|++|+|.|++.++||||+++|+|+.++|++|++++..+.++++.+.+.+
T Consensus 200 ~~~---~v~yi~r~~n~~~KAgnLN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqt 264 (713)
T TIGR03030 200 RKL---GVNYITRPRNVHAKAGNINNALKHTDGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQT 264 (713)
T ss_pred HHc---CcEEEECCCCCCCChHHHHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEeC
Confidence 654 4888887776 469999999999999999999999999999999999999988887666533
No 28
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=99.85 E-value=4e-20 Score=171.04 Aligned_cols=117 Identities=16% Similarity=0.242 Sum_probs=99.2
Q ss_pred CCCceEEEEEeecCCCC-ChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCC
Q 027065 63 PAEKYISLIIPAFNEEH-RLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRN 141 (229)
Q Consensus 63 ~~~p~vsviip~~ne~~-~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~ 141 (229)
...|+|||+||+|||+. .+++++.+++++. ++..++||+|+||||+|++.++++++ +++++..++|
T Consensus 257 ~~~P~VsViIPtYNE~~~vv~~tI~a~l~~d------YP~~k~EViVVDDgS~D~t~~la~~~-------~v~yI~R~~n 323 (852)
T PRK11498 257 SLWPTVDIFVPTYNEDLNVVKNTIYASLGID------WPKDKLNIWILDDGGREEFRQFAQEV-------GVKYIARPTH 323 (852)
T ss_pred CCCCcEEEEEecCCCcHHHHHHHHHHHHhcc------CCCCceEEEEEeCCCChHHHHHHHHC-------CcEEEEeCCC
Confidence 34578999999999994 5678888888732 23346999999999999999888765 6888887755
Q ss_pred -CCHHHHHHHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHhCCcceeec
Q 027065 142 -HGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHG 192 (229)
Q Consensus 142 -~gk~~a~n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~ 192 (229)
.||++|+|.|++.++||||+++|+|+.+++++|++++..+.++++.+.+.+
T Consensus 324 ~~gKAGnLN~aL~~a~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~VglVQt 375 (852)
T PRK11498 324 EHAKAGNINNALKYAKGEFVAIFDCDHVPTRSFLQMTMGWFLKDKKLAMMQT 375 (852)
T ss_pred CcchHHHHHHHHHhCCCCEEEEECCCCCCChHHHHHHHHHHHhCCCeEEEEc
Confidence 569999999999999999999999999999999999999988888776544
No 29
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.85 E-value=1.4e-20 Score=147.33 Aligned_cols=117 Identities=24% Similarity=0.386 Sum_probs=101.8
Q ss_pred EEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHH
Q 027065 69 SLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAI 148 (229)
Q Consensus 69 sviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~ 148 (229)
|||||+||+++.++++|+|+.+ |.++++|||||||||+|++.++++++..+ +.++...++.|++.++
T Consensus 1 sivi~~~n~~~~l~~~l~sl~~--------q~~~~~evivvDd~s~d~~~~~~~~~~~~-----~~~~~~~~~~g~~~a~ 67 (202)
T cd06433 1 SIITPTYNQAETLEETIDSVLS--------QTYPNIEYIVIDGGSTDGTVDIIKKYEDK-----ITYWISEPDKGIYDAM 67 (202)
T ss_pred CEEEeccchHHHHHHHHHHHHh--------CCCCCceEEEEeCCCCccHHHHHHHhHhh-----cEEEEecCCcCHHHHH
Confidence 6899999999999999999998 67778999999999999999999887553 3344456789999999
Q ss_pred HHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHhCCcceeeccceeec
Q 027065 149 RKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVD 198 (229)
Q Consensus 149 n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 198 (229)
|.|++.+++|||+++|+|+.+.++++.+++..+...++..+++|......
T Consensus 68 n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~ 117 (202)
T cd06433 68 NKGIALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVD 117 (202)
T ss_pred HHHHHHcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEc
Confidence 99999999999999999999999999999988888777777777665443
No 30
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.85 E-value=1e-19 Score=159.74 Aligned_cols=114 Identities=32% Similarity=0.517 Sum_probs=104.5
Q ss_pred CceEEEEEeecCCCC-ChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEc-CCCC
Q 027065 65 EKYISLIIPAFNEEH-RLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILL-GRNH 142 (229)
Q Consensus 65 ~p~vsviip~~ne~~-~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~-~~~~ 142 (229)
.|+++|+||+|||+. .++++++++.+ |+|+++||++|||+|+|++.+++++...+++ ++++++.. .++.
T Consensus 53 ~p~vsviiP~ynE~~~~~~~~l~s~~~--------~dyp~~evivv~d~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 123 (439)
T COG1215 53 LPKVSVIIPAYNEEPEVLEETLESLLS--------QDYPRYEVIVVDDGSTDETYEILEELGAEYG-PNFRVIYPEKKNG 123 (439)
T ss_pred CCceEEEEecCCCchhhHHHHHHHHHh--------CCCCCceEEEECCCCChhHHHHHHHHHhhcC-cceEEEeccccCc
Confidence 588999999999997 99999999999 8899999999999999999999999999984 26777644 5689
Q ss_pred CHHHHHHHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHhCCc
Q 027065 143 GKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRK 187 (229)
Q Consensus 143 gk~~a~n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~ 187 (229)
||++|+|.|+..+++|+|+++|+|+.++|++|.+++..+.+.+..
T Consensus 124 gK~~al~~~l~~~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~ 168 (439)
T COG1215 124 GKAGALNNGLKRAKGDVVVILDADTVPEPDALRELVSPFEDPPVG 168 (439)
T ss_pred cchHHHHHHHhhcCCCEEEEEcCCCCCChhHHHHHHhhhcCCCee
Confidence 999999999999999999999999999999999999999887655
No 31
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=99.84 E-value=2.8e-20 Score=150.16 Aligned_cols=114 Identities=18% Similarity=0.281 Sum_probs=97.0
Q ss_pred EEEEeecCCC-CChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchH-HHHHHHHHHcCCCcEEEEEcCCCCC-HH
Q 027065 69 SLIIPAFNEE-HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTK-RVAFDFVRKYTVDNVRIILLGRNHG-KG 145 (229)
Q Consensus 69 sviip~~ne~-~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~-~~~~~~~~~~~~~~i~vi~~~~~~g-k~ 145 (229)
|||||+|||+ +.++++|+|+.+ |+++++|||||||+|+|+|. +.++++.++++ .+++++...++.| ++
T Consensus 1 siiip~~ne~~~~l~~~l~sl~~--------q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~~-~~i~~i~~~~~~G~~~ 71 (236)
T cd06435 1 SIHVPCYEEPPEMVKETLDSLAA--------LDYPNFEVIVIDNNTKDEALWKPVEAHCAQLG-ERFRFFHVEPLPGAKA 71 (236)
T ss_pred CeeEeeCCCcHHHHHHHHHHHHh--------CCCCCcEEEEEeCCCCchhHHHHHHHHHHHhC-CcEEEEEcCCCCCCch
Confidence 6999999998 689999999988 77888999999999999985 77777776654 3678888777777 69
Q ss_pred HHHHHHHHhcC--CCEEEEEcCCCCCChhhHHHHHHHHHHhCCcceeec
Q 027065 146 EAIRKGMLHSR--GELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHG 192 (229)
Q Consensus 146 ~a~n~gl~~a~--~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~ 192 (229)
+|+|.|++.++ +|||+|+|+|+.++|++|.+++..++ .++.+++.+
T Consensus 72 ~a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~-~~~~~~v~~ 119 (236)
T cd06435 72 GALNYALERTAPDAEIIAVIDADYQVEPDWLKRLVPIFD-DPRVGFVQA 119 (236)
T ss_pred HHHHHHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhc-CCCeeEEec
Confidence 99999999986 69999999999999999999999996 466555544
No 32
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=99.84 E-value=1.7e-20 Score=157.31 Aligned_cols=122 Identities=24% Similarity=0.330 Sum_probs=98.8
Q ss_pred CCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEE-EcCCCC
Q 027065 64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRII-LLGRNH 142 (229)
Q Consensus 64 ~~p~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi-~~~~~~ 142 (229)
..|++|||||+|||++.|.++|+++.++..+ ...+|||||||||+|+|.++++++..+.-. ...++ ..+.|.
T Consensus 29 ~~~~vSVVIPayNee~~I~~~l~sl~~~~~~------~~~~EIIVVDDgStD~T~~ia~~~~~~v~~-~~~~~~~~~~n~ 101 (306)
T PRK13915 29 AGRTVSVVLPALNEEETVGKVVDSIRPLLME------PLVDELIVIDSGSTDATAERAAAAGARVVS-REEILPELPPRP 101 (306)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHHHHHHhcc------CCCcEEEEEeCCCccHHHHHHHHhcchhhc-chhhhhccccCC
Confidence 4578999999999999999999999885431 236799999999999999999887443210 11222 235689
Q ss_pred CHHHHHHHHHHhcCCCEEEEEcCCCC-CChhhHHHHHHHHHHhCCcceeec
Q 027065 143 GKGEAIRKGMLHSRGELLLMLDADGA-TKVTDLEKLESQIHAVGRKEYNHG 192 (229)
Q Consensus 143 gk~~a~n~gl~~a~~d~v~~lD~D~~-~~~~~l~~l~~~~~~~~~~~~~~~ 192 (229)
|++.|+|.|++.+++|+|+|+|+|+. ++|+++.++++.+..+++...+.|
T Consensus 102 Gkg~A~~~g~~~a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g 152 (306)
T PRK13915 102 GKGEALWRSLAATTGDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKA 152 (306)
T ss_pred CHHHHHHHHHHhcCCCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEE
Confidence 99999999999999999999999996 899999999999986666555544
No 33
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.84 E-value=4.1e-20 Score=147.90 Aligned_cols=110 Identities=24% Similarity=0.280 Sum_probs=95.4
Q ss_pred EEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCc--eEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcC--CCCCHH
Q 027065 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFT--YEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG--RNHGKG 145 (229)
Q Consensus 70 viip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~--~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~--~~~gk~ 145 (229)
||||+||+++.|++||+|+.. |++++ +|||||||||+|+|.++++ +....+..+++++..+ .+.|+.
T Consensus 1 viip~~n~~~~l~~~l~sl~~--------q~~~~~~~eiivvdd~s~d~t~~~~~-~~~~~~~~~v~~~~~~~~~~~g~~ 71 (229)
T cd04192 1 VVIAARNEAENLPRLLQSLSA--------LDYPKEKFEVILVDDHSTDGTVQILE-FAAAKPNFQLKILNNSRVSISGKK 71 (229)
T ss_pred CEEEecCcHHHHHHHHHHHHh--------CCCCCCceEEEEEcCCCCcChHHHHH-HHHhCCCcceEEeeccCcccchhH
Confidence 699999999999999999988 66666 9999999999999999988 4444443478888776 478999
Q ss_pred HHHHHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHhCCcc
Q 027065 146 EAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKE 188 (229)
Q Consensus 146 ~a~n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~ 188 (229)
.++|.|++.+++|||+++|+|+.+.|++|+++++.+.+.+...
T Consensus 72 ~a~n~g~~~~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~ 114 (229)
T cd04192 72 NALTTAIKAAKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGL 114 (229)
T ss_pred HHHHHHHHHhcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcE
Confidence 9999999999999999999999999999999999887655433
No 34
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=99.83 E-value=2e-20 Score=145.73 Aligned_cols=109 Identities=25% Similarity=0.301 Sum_probs=90.7
Q ss_pred EEEeecCCCCChHHHHHHHHHHHHHhhhhcCC--CceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHH
Q 027065 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKS--FTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEA 147 (229)
Q Consensus 70 viip~~ne~~~l~~~l~sl~~~~~~~~~~~~~--~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a 147 (229)
||||+|||++.|.++|+++.+ |.+ ..+|||||||||+|+|.++++++.. .+.+...+++.||+.|
T Consensus 1 VvIp~~ne~~~i~~~l~sl~~--------~~~p~~~~eiivvdd~s~D~t~~~~~~~~~-----~~~~~~~~~~~gk~~a 67 (183)
T cd06438 1 ILIPAHNEEAVIGNTVRSLKA--------QDYPRELYRIFVVADNCTDDTAQVARAAGA-----TVLERHDPERRGKGYA 67 (183)
T ss_pred CEEeccchHHHHHHHHHHHHh--------cCCCCcccEEEEEeCCCCchHHHHHHHcCC-----eEEEeCCCCCCCHHHH
Confidence 699999999999999999988 444 5699999999999999998876521 2333344568899999
Q ss_pred HHHHHHhc-----CCCEEEEEcCCCCCChhhHHHHHHHHHHhCCcceee
Q 027065 148 IRKGMLHS-----RGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNH 191 (229)
Q Consensus 148 ~n~gl~~a-----~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~ 191 (229)
+|.|++.+ ++|+++++|+|+.++|+++.++++.+.++.+.+.++
T Consensus 68 ln~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~ 116 (183)
T cd06438 68 LDFGFRHLLNLADDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAY 116 (183)
T ss_pred HHHHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEE
Confidence 99999976 499999999999999999999999998876655443
No 35
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=99.83 E-value=4.8e-20 Score=140.24 Aligned_cols=121 Identities=26% Similarity=0.427 Sum_probs=105.0
Q ss_pred EEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHH
Q 027065 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR 149 (229)
Q Consensus 70 viip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n 149 (229)
||||+||+++.+.++|+++.+ |.+.++||+|+||+|+|.|.+.++++....+ ..+.++..+++.|++.++|
T Consensus 1 Viip~~n~~~~l~~~l~sl~~--------q~~~~~~iivvdd~s~d~t~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~n 71 (180)
T cd06423 1 IIVPAYNEEAVIERTIESLLA--------LDYPKLEVIVVDDGSTDDTLEILEELAALYI-RRVLVVRDKENGGKAGALN 71 (180)
T ss_pred CeecccChHHHHHHHHHHHHh--------CCCCceEEEEEeCCCccchHHHHHHHhcccc-ceEEEEEecccCCchHHHH
Confidence 689999999999999999999 6667899999999999999999998876653 2567777888999999999
Q ss_pred HHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHhCCcceeeccceeecC
Q 027065 150 KGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDS 199 (229)
Q Consensus 150 ~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 199 (229)
.|++.+++++++++|+|+.+.++++++++..+...++...+.+.......
T Consensus 72 ~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~ 121 (180)
T cd06423 72 AGLRHAKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNG 121 (180)
T ss_pred HHHHhcCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecC
Confidence 99999999999999999999999999998888877777776665554443
No 36
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=99.83 E-value=5e-20 Score=142.92 Aligned_cols=107 Identities=36% Similarity=0.700 Sum_probs=97.7
Q ss_pred EEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHH
Q 027065 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR 149 (229)
Q Consensus 70 viip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n 149 (229)
|+||+||+++.+.+||+++.++.++ +.++||||+||+|+|+|.++++++..+++ .++++..+++.|+++|+|
T Consensus 1 iii~~~n~~~~l~~~l~sl~~~~~~------~~~~eiivvd~~s~d~~~~~~~~~~~~~~--~~~~~~~~~n~G~~~a~n 72 (185)
T cd04179 1 VVIPAYNEEENIPELVERLLAVLEE------GYDYEIIVVDDGSTDGTAEIARELAARVP--RVRVIRLSRNFGKGAAVR 72 (185)
T ss_pred CeecccChHhhHHHHHHHHHHHhcc------CCCEEEEEEcCCCCCChHHHHHHHHHhCC--CeEEEEccCCCCccHHHH
Confidence 6899999999999999999995431 35799999999999999999999988887 778999999999999999
Q ss_pred HHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHh
Q 027065 150 KGMLHSRGELLLMLDADGATKVTDLEKLESQIHAV 184 (229)
Q Consensus 150 ~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~ 184 (229)
.|++.++|||++++|+|+.+.|++|++++..+.+.
T Consensus 73 ~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~ 107 (185)
T cd04179 73 AGFKAARGDIVVTMDADLQHPPEDIPKLLEKLLEG 107 (185)
T ss_pred HHHHHhcCCEEEEEeCCCCCCHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999995543
No 37
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=99.83 E-value=1.8e-19 Score=139.55 Aligned_cols=104 Identities=23% Similarity=0.371 Sum_probs=91.3
Q ss_pred EEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHH
Q 027065 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR 149 (229)
Q Consensus 70 viip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n 149 (229)
||||+||+++.++++|+|+.+ |++.++||||+||||+|.|.++++++.+..+.+.+.+...+.+.|++.++|
T Consensus 1 ivip~~n~~~~l~~~l~sl~~--------q~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n 72 (182)
T cd06420 1 LIITTYNRPEALELVLKSVLN--------QSILPFEVIIADDGSTEETKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRN 72 (182)
T ss_pred CEEeecCChHHHHHHHHHHHh--------ccCCCCEEEEEeCCCchhHHHHHHHHHhhcCCceEEEEcCCcchhHHHHHH
Confidence 689999999999999999999 567789999999999999999999887755422444555555678999999
Q ss_pred HHHHhcCCCEEEEEcCCCCCChhhHHHHHHHH
Q 027065 150 KGMLHSRGELLLMLDADGATKVTDLEKLESQI 181 (229)
Q Consensus 150 ~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~ 181 (229)
.|++.+++||++++|+|+.+++++++++++.+
T Consensus 73 ~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 73 KAIAAAKGDYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred HHHHHhcCCEEEEEcCCcccCHHHHHHHHHHh
Confidence 99999999999999999999999999999988
No 38
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=99.83 E-value=5.8e-20 Score=148.04 Aligned_cols=117 Identities=20% Similarity=0.348 Sum_probs=98.2
Q ss_pred eEEEEEeecCCC-CChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHH
Q 027065 67 YISLIIPAFNEE-HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKG 145 (229)
Q Consensus 67 ~vsviip~~ne~-~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~ 145 (229)
.||||||+|||+ +.+.+||+++.+ |+ ++|||||||||+|++.+.+++.. ..+ .+.++. .++.||.
T Consensus 1 ~isVvIp~~ne~~~~l~~~l~sl~~--------q~--~~eiivvdd~s~d~~~~~l~~~~-~~~--~~~v~~-~~~~g~~ 66 (235)
T cd06434 1 DVTVIIPVYDEDPDVFRECLRSILR--------QK--PLEIIVVTDGDDEPYLSILSQTV-KYG--GIFVIT-VPHPGKR 66 (235)
T ss_pred CeEEEEeecCCChHHHHHHHHHHHh--------CC--CCEEEEEeCCCChHHHHHHHhhc-cCC--cEEEEe-cCCCChH
Confidence 389999999999 999999999999 55 68999999999999998875432 233 566665 5689999
Q ss_pred HHHHHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHhCCcceeeccceeec
Q 027065 146 EAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVD 198 (229)
Q Consensus 146 ~a~n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 198 (229)
.|+|.|++.+++|+|+|+|+|+.+.|++|+++++.+. .++...+.+......
T Consensus 67 ~a~n~g~~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~-~~~v~~v~~~~~~~~ 118 (235)
T cd06434 67 RALAEGIRHVTTDIVVLLDSDTVWPPNALPEMLKPFE-DPKVGGVGTNQRILR 118 (235)
T ss_pred HHHHHHHHHhCCCEEEEECCCceeChhHHHHHHHhcc-CCCEeEEcCceEeec
Confidence 9999999999999999999999999999999999998 666666655544433
No 39
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=99.83 E-value=5.9e-20 Score=144.18 Aligned_cols=110 Identities=25% Similarity=0.382 Sum_probs=91.4
Q ss_pred EEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcC---CCCCHHH
Q 027065 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG---RNHGKGE 146 (229)
Q Consensus 70 viip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~---~~~gk~~ 146 (229)
||||+|||++.|.+||+++.+ |. +++|||||||||+|.|.++++ +...++ +++++... .+.||+.
T Consensus 1 ViIp~~Ne~~~l~~~l~sl~~--------~~-~~~eIivvdd~S~D~t~~~~~-~~~~~~--~v~~i~~~~~~~~~Gk~~ 68 (191)
T cd06436 1 VLVPCLNEEAVIQRTLASLLR--------NK-PNFLVLVIDDASDDDTAGIVR-LAITDS--RVHLLRRHLPNARTGKGD 68 (191)
T ss_pred CEEeccccHHHHHHHHHHHHh--------CC-CCeEEEEEECCCCcCHHHHHh-heecCC--cEEEEeccCCcCCCCHHH
Confidence 699999999999999999998 55 679999999999999999988 433334 78888753 4689999
Q ss_pred HHHHHHHhcC-----------CCEEEEEcCCCCCChhhHHHHHHHHHHhCCcceeec
Q 027065 147 AIRKGMLHSR-----------GELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHG 192 (229)
Q Consensus 147 a~n~gl~~a~-----------~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~ 192 (229)
|+|.|++.++ +|+|+++|+|+.++|++|+++...+. .++...+.+
T Consensus 69 aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~~~~-~~~v~~v~~ 124 (191)
T cd06436 69 ALNAAYDQIRQILIEEGADPERVIIAVIDADGRLDPNALEAVAPYFS-DPRVAGTQS 124 (191)
T ss_pred HHHHHHHHHhhhccccccCCCccEEEEECCCCCcCHhHHHHHHHhhc-CCceEEEee
Confidence 9999999875 37999999999999999999888775 455444433
No 40
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.82 E-value=7.7e-20 Score=144.22 Aligned_cols=118 Identities=19% Similarity=0.244 Sum_probs=101.8
Q ss_pred EEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHH
Q 027065 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR 149 (229)
Q Consensus 70 viip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n 149 (229)
||||+||+++.+++||+|+.+ |+++++||||+||||+|+|.++++++....+ ++++..++|.|.+.++|
T Consensus 1 viI~~~n~~~~l~~~l~sl~~--------q~~~~~eiiivD~~s~d~t~~~~~~~~~~~~---i~~~~~~~n~g~~~~~n 69 (202)
T cd04185 1 AVVVTYNRLDLLKECLDALLA--------QTRPPDHIIVIDNASTDGTAEWLTSLGDLDN---IVYLRLPENLGGAGGFY 69 (202)
T ss_pred CEEEeeCCHHHHHHHHHHHHh--------ccCCCceEEEEECCCCcchHHHHHHhcCCCc---eEEEECccccchhhHHH
Confidence 689999999999999999998 6677899999999999999999998865543 78899999999999999
Q ss_pred HHHHhc---CCCEEEEEcCCCCCChhhHHHHHHHHHHhCCcceeeccceeecC
Q 027065 150 KGMLHS---RGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDS 199 (229)
Q Consensus 150 ~gl~~a---~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 199 (229)
.|++.+ ++|+++|+|+|+.+++++++++++.+. .+......+.....++
T Consensus 70 ~~~~~a~~~~~d~v~~ld~D~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~~ 121 (202)
T cd04185 70 EGVRRAYELGYDWIWLMDDDAIPDPDALEKLLAYAD-KDNPQFLAPLVLDPDG 121 (202)
T ss_pred HHHHHHhccCCCEEEEeCCCCCcChHHHHHHHHHHh-cCCceEecceeEcCCC
Confidence 999876 689999999999999999999999998 5555555655554443
No 41
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=99.82 E-value=1.9e-19 Score=145.83 Aligned_cols=107 Identities=26% Similarity=0.456 Sum_probs=96.8
Q ss_pred EEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCC--CceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHH
Q 027065 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKS--FTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKG 145 (229)
Q Consensus 68 vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~--~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~ 145 (229)
+|||||+||+++.+.++|+++.+ |.+ .++|||||||+|+|+|.+.++++..+.+ .++++..+ +.|++
T Consensus 2 ~sIiip~~n~~~~l~~~l~sl~~--------q~~~~~~~evivvd~~s~d~~~~~~~~~~~~~~--~v~~i~~~-~~~~~ 70 (249)
T cd02525 2 VSIIIPVRNEEKYIEELLESLLN--------QSYPKDLIEIIVVDGGSTDGTREIVQEYAAKDP--RIRLIDNP-KRIQS 70 (249)
T ss_pred EEEEEEcCCchhhHHHHHHHHHh--------ccCCCCccEEEEEeCCCCccHHHHHHHHHhcCC--eEEEEeCC-CCCch
Confidence 89999999999999999999988 444 5899999999999999999999988766 78888875 66899
Q ss_pred HHHHHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHhC
Q 027065 146 EAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVG 185 (229)
Q Consensus 146 ~a~n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~ 185 (229)
.|+|.|++.+++||++|+|+|+.++|++|+++++.+.+.+
T Consensus 71 ~a~N~g~~~a~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~ 110 (249)
T cd02525 71 AGLNIGIRNSRGDIIIRVDAHAVYPKDYILELVEALKRTG 110 (249)
T ss_pred HHHHHHHHHhCCCEEEEECCCccCCHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999886643
No 42
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=99.82 E-value=1.8e-19 Score=145.41 Aligned_cols=103 Identities=20% Similarity=0.290 Sum_probs=92.6
Q ss_pred EEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHH
Q 027065 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEA 147 (229)
Q Consensus 68 vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a 147 (229)
+||+||+||++..|++||+|+.. | ..|||||||||+|+|.++++++ +++++.. .+.|.+.+
T Consensus 2 isvii~~~Ne~~~l~~~l~sl~~--------~---~~eiivvD~gStD~t~~i~~~~-------~~~v~~~-~~~g~~~~ 62 (229)
T cd02511 2 LSVVIITKNEERNIERCLESVKW--------A---VDEIIVVDSGSTDRTVEIAKEY-------GAKVYQR-WWDGFGAQ 62 (229)
T ss_pred EEEEEEeCCcHHHHHHHHHHHhc--------c---cCEEEEEeCCCCccHHHHHHHc-------CCEEEEC-CCCChHHH
Confidence 89999999999999999999977 3 2499999999999999998854 5788877 79999999
Q ss_pred HHHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHhCCcce
Q 027065 148 IRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEY 189 (229)
Q Consensus 148 ~n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~ 189 (229)
+|.|++.+++|||+++|+|+.++|++++++.+.+++++....
T Consensus 63 ~n~~~~~a~~d~vl~lDaD~~~~~~~~~~l~~~~~~~~~~~~ 104 (229)
T cd02511 63 RNFALELATNDWVLSLDADERLTPELADEILALLATDDYDGY 104 (229)
T ss_pred HHHHHHhCCCCEEEEEeCCcCcCHHHHHHHHHHHhCCCCcEE
Confidence 999999999999999999999999999999999988775333
No 43
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=99.81 E-value=5.2e-19 Score=133.38 Aligned_cols=115 Identities=27% Similarity=0.447 Sum_probs=103.5
Q ss_pred ceEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHH
Q 027065 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKG 145 (229)
Q Consensus 66 p~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~ 145 (229)
++.||++|+|||.++++-++.-+..... +...++|||+|||+|.|+|.++++++++.+..+++.+.......|.+
T Consensus 3 ~kYsvilPtYnEk~Nlpi~~~li~~~~~-----e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg~d~i~l~pR~~klGLg 77 (238)
T KOG2978|consen 3 IKYSVILPTYNEKENLPIITRLIAKYMS-----EEGKKYEIIIVDDASPDGTQEVAKALQKIYGEDNILLKPRTKKLGLG 77 (238)
T ss_pred cceeEEeccccCCCCCeeeHHHHHhhhh-----hhcCceEEEEEeCCCCCccHHHHHHHHHHhCCCcEEEEeccCcccch
Confidence 4689999999999999866665555444 34668999999999999999999999999998899999999899999
Q ss_pred HHHHHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHhC
Q 027065 146 EAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVG 185 (229)
Q Consensus 146 ~a~n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~ 185 (229)
.|.-.|++.|+|+|++++|+|-..+|.++.++.+..+++.
T Consensus 78 tAy~hgl~~a~g~fiviMDaDlsHhPk~ipe~i~lq~~~~ 117 (238)
T KOG2978|consen 78 TAYIHGLKHATGDFIVIMDADLSHHPKFIPEFIRLQKEGN 117 (238)
T ss_pred HHHHhhhhhccCCeEEEEeCccCCCchhHHHHHHHhhccC
Confidence 9999999999999999999999999999999999887765
No 44
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=99.81 E-value=1.6e-20 Score=150.71 Aligned_cols=120 Identities=31% Similarity=0.442 Sum_probs=89.0
Q ss_pred ceEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCC--
Q 027065 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG-- 143 (229)
Q Consensus 66 p~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~g-- 143 (229)
|.|+|+||+||+++.+.++|+|+++ |+++++||+|+||++++++.+.++++.++++...++++..+.+.|
T Consensus 1 P~v~Vvip~~~~~~~l~~~l~sl~~--------~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~g~~ 72 (228)
T PF13641_consen 1 PRVSVVIPAYNEDDVLRRCLESLLA--------QDYPRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRPRNPGPG 72 (228)
T ss_dssp --EEEE--BSS-HHHHHHHHHHHTT--------SHHHTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE----HHHH
T ss_pred CEEEEEEEecCCHHHHHHHHHHHHc--------CCCCCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecCCCCCcc
Confidence 5699999999999999999999998 444589999999999999999999999998844678888776554
Q ss_pred -HHHHHHHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHhCCcceeeccc
Q 027065 144 -KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDS 194 (229)
Q Consensus 144 -k~~a~n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 194 (229)
|+.++|.|++.+++|+|+++|+|+.++|++|.++++.+ ..++...+.+..
T Consensus 73 ~k~~a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~-~~~~~~~v~~~~ 123 (228)
T PF13641_consen 73 GKARALNEALAAARGDYILFLDDDTVLDPDWLERLLAAF-ADPGVGAVGGPV 123 (228)
T ss_dssp HHHHHHHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHH-HBSS--EEEEEE
T ss_pred hHHHHHHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHH-HhCCCCeEeeeE
Confidence 88999999999999999999999999999999999999 666666554433
No 45
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.80 E-value=1.1e-18 Score=135.85 Aligned_cols=107 Identities=35% Similarity=0.553 Sum_probs=94.8
Q ss_pred CceEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCH
Q 027065 65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGK 144 (229)
Q Consensus 65 ~p~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk 144 (229)
.|++|||||+||++..+.++|+|+.+| ++.++|||||||||+|+|.++++++....+ .+......++.|.
T Consensus 2 ~~~~siiip~~n~~~~l~~~l~s~~~q--------~~~~~eiivvddgs~d~t~~~~~~~~~~~~--~~~~~~~~~~~g~ 71 (291)
T COG0463 2 MPKVSVVIPTYNEEEYLPEALESLLNQ--------TYKDFEIIVVDDGSTDGTTEIAIEYGAKDV--RVIRLINERNGGL 71 (291)
T ss_pred CccEEEEEeccchhhhHHHHHHHHHhh--------hhcceEEEEEeCCCCCChHHHHHHHhhhcc--eEEEeecccCCCh
Confidence 468999999999999999999999994 455689999999999999999999987753 5667777789999
Q ss_pred HHHHHHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHH
Q 027065 145 GEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIH 182 (229)
Q Consensus 145 ~~a~n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~ 182 (229)
+.++|.|+..+.++++.++|+|+. .++.+..+.....
T Consensus 72 ~~~~~~~~~~~~~~~~~~~d~d~~-~~~~~~~~~~~~~ 108 (291)
T COG0463 72 GAARNAGLEYARGDYIVFLDADDQ-HPPELIPLVAAGG 108 (291)
T ss_pred HHHHHhhHHhccCCEEEEEccCCC-CCHHHHHHHHHhh
Confidence 999999999999999999999999 9999888555553
No 46
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=99.79 E-value=5.3e-18 Score=149.97 Aligned_cols=110 Identities=17% Similarity=0.286 Sum_probs=93.5
Q ss_pred CCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC--C
Q 027065 64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR--N 141 (229)
Q Consensus 64 ~~p~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~--~ 141 (229)
+.|.++|+||+|||++.|.++|++++.+ ++|+++||+|++|+|+|+|.+.++++.+++| +++++..+. .
T Consensus 64 ~~p~vaIlIPA~NE~~vI~~~l~s~L~~-------ldY~~~eIiVv~d~ndd~T~~~v~~l~~~~p--~v~~vv~~~~gp 134 (504)
T PRK14716 64 PEKRIAIFVPAWREADVIGRMLEHNLAT-------LDYENYRIFVGTYPNDPATLREVDRLAARYP--RVHLVIVPHDGP 134 (504)
T ss_pred CCCceEEEEeccCchhHHHHHHHHHHHc-------CCCCCeEEEEEECCCChhHHHHHHHHHHHCC--CeEEEEeCCCCC
Confidence 4677999999999999999999998762 5678999999999999999999999999998 676555432 3
Q ss_pred CCHHHHHHHHHHhc------CC---CEEEEEcCCCCCChhhHHHHHHHHH
Q 027065 142 HGKGEAIRKGMLHS------RG---ELLLMLDADGATKVTDLEKLESQIH 182 (229)
Q Consensus 142 ~gk~~a~n~gl~~a------~~---d~v~~lD~D~~~~~~~l~~l~~~~~ 182 (229)
.||+.|+|.|++.+ +| |+++++|+|+.++|+++..+...+.
T Consensus 135 ~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd~Lr~~~~~~~ 184 (504)
T PRK14716 135 TSKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHPLELRLYNYLLP 184 (504)
T ss_pred CCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCccHHHHHHhhcC
Confidence 56999999999754 45 9999999999999999998765543
No 47
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.79 E-value=1.8e-18 Score=131.38 Aligned_cols=110 Identities=25% Similarity=0.385 Sum_probs=97.9
Q ss_pred EEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHH
Q 027065 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR 149 (229)
Q Consensus 70 viip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n 149 (229)
|+||+||+.+.+.++++|+.+ |.++++||+|+||||+|++.+.+++.. + +++++..+++.|++.|+|
T Consensus 1 vii~~~~~~~~l~~~l~sl~~--------~~~~~~~iiivdd~s~~~~~~~~~~~~---~--~~~~~~~~~~~g~~~a~n 67 (166)
T cd04186 1 IIIVNYNSLEYLKACLDSLLA--------QTYPDFEVIVVDNASTDGSVELLRELF---P--EVRLIRNGENLGFGAGNN 67 (166)
T ss_pred CEEEecCCHHHHHHHHHHHHh--------ccCCCeEEEEEECCCCchHHHHHHHhC---C--CeEEEecCCCcChHHHhh
Confidence 689999999999999999998 555789999999999999998887652 2 588888888999999999
Q ss_pred HHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHhCCcceeec
Q 027065 150 KGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHG 192 (229)
Q Consensus 150 ~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~ 192 (229)
.|++.+++++++|+|+|+.+.++++..+++.+.+.++.....+
T Consensus 68 ~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~ 110 (166)
T cd04186 68 QGIREAKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGP 110 (166)
T ss_pred HHHhhCCCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEc
Confidence 9999999999999999999999999999999988887665443
No 48
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=99.77 E-value=6.4e-17 Score=147.85 Aligned_cols=122 Identities=17% Similarity=0.225 Sum_probs=95.3
Q ss_pred CCCceEEEEEeecCCCC-----ChHHHHHHHHHHHHHhhhhcCC-CceEEEEEECCCCcchHHH----HHHHHHHcC-CC
Q 027065 63 PAEKYISLIIPAFNEEH-----RLPGALDETLNYLQQRAAKDKS-FTYEVLIIDDGSSDGTKRV----AFDFVRKYT-VD 131 (229)
Q Consensus 63 ~~~p~vsviip~~ne~~-----~l~~~l~sl~~~~~~~~~~~~~-~~~eiivvdd~s~d~t~~~----~~~~~~~~~-~~ 131 (229)
+..|+|+|+||+|||+. .++.+++|+.+ +++ .++|++|+||+++|++... ..++.++++ ..
T Consensus 121 ~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~--------~~~~~~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~ 192 (691)
T PRK05454 121 PPEARTAILMPIYNEDPARVFAGLRAMYESLAA--------TGHGAHFDFFILSDTRDPDIAAAEEAAWLELRAELGGEG 192 (691)
T ss_pred CCCCceEEEEeCCCCChHHHHHHHHHHHHHHHh--------cCCCCCEEEEEEECCCChhHHHHHHHHHHHHHHhcCCCC
Confidence 45678999999999984 35555555554 334 5799999999999987643 345566654 23
Q ss_pred cEEEEEcCCCCC-HHHHHHHHHHh--cCCCEEEEEcCCCCCChhhHHHHHHHHHHhCCcceeec
Q 027065 132 NVRIILLGRNHG-KGEAIRKGMLH--SRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHG 192 (229)
Q Consensus 132 ~i~vi~~~~~~g-k~~a~n~gl~~--a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~ 192 (229)
++.+.+...|.| |++++|.+++. +++||++++|+|+.++++++.+++..++.+++.+++-+
T Consensus 193 ~i~yr~R~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~vGlVQt 256 (691)
T PRK05454 193 RIFYRRRRRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPRAGLIQT 256 (691)
T ss_pred cEEEEECCcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcCEEEEeC
Confidence 688887777766 88999999998 56799999999999999999999999998887766543
No 49
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.77 E-value=4e-18 Score=135.95 Aligned_cols=102 Identities=29% Similarity=0.463 Sum_probs=89.3
Q ss_pred EEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHH
Q 027065 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEA 147 (229)
Q Consensus 68 vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a 147 (229)
|||+||+||+++.+.++|+|+.+ |.+.++|||||||+|+|++.+++++ . ++.++. .+.|++.+
T Consensus 1 vsvii~~~n~~~~l~~~l~sl~~--------q~~~~~evivvdd~s~d~~~~~~~~-----~--~~~~~~--~~~g~~~a 63 (221)
T cd02522 1 LSIIIPTLNEAENLPRLLASLRR--------LNPLPLEIIVVDGGSTDGTVAIARS-----A--GVVVIS--SPKGRARQ 63 (221)
T ss_pred CEEEEEccCcHHHHHHHHHHHHh--------ccCCCcEEEEEeCCCCccHHHHHhc-----C--CeEEEe--CCcCHHHH
Confidence 68999999999999999999998 5567899999999999999988876 2 566655 35789999
Q ss_pred HHHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHhCC
Q 027065 148 IRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGR 186 (229)
Q Consensus 148 ~n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~ 186 (229)
+|.|++.+++++++++|+|+.+.++++++++..+.+.+.
T Consensus 64 ~n~g~~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~~ 102 (221)
T cd02522 64 MNAGAAAARGDWLLFLHADTRLPPDWDAAIIETLRADGA 102 (221)
T ss_pred HHHHHHhccCCEEEEEcCCCCCChhHHHHHHHHhhcCCc
Confidence 999999999999999999999999999999877765443
No 50
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.76 E-value=4.7e-17 Score=149.42 Aligned_cols=115 Identities=15% Similarity=0.192 Sum_probs=96.8
Q ss_pred CCCCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC-
Q 027065 62 DPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR- 140 (229)
Q Consensus 62 ~~~~p~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~- 140 (229)
....|.+||+||+|||+..+.+++++++.. ++|+++||++++|++++.|.++++++++++| +++++..++
T Consensus 59 ~~~~~~vsIlVPa~nE~~vi~~~i~~ll~~-------ldYP~~eI~vi~~~nD~~T~~~~~~l~~~~p--~~~~v~~~~~ 129 (727)
T PRK11234 59 KPDEKPLAIMVPAWNETGVIGNMAELAATT-------LDYENYHIFVGTYPNDPATQADVDAVCARFP--NVHKVVCARP 129 (727)
T ss_pred cCCCCCEEEEEecCcchhhHHHHHHHHHHh-------CCCCCeEEEEEecCCChhHHHHHHHHHHHCC--CcEEEEeCCC
Confidence 345577999999999999999999998751 6788999999999999999999999999998 676655544
Q ss_pred -CCCHHHHHHHHHHhc---------CCCEEEEEcCCCCCChhhHHHHHHHHHHhCC
Q 027065 141 -NHGKGEAIRKGMLHS---------RGELLLMLDADGATKVTDLEKLESQIHAVGR 186 (229)
Q Consensus 141 -~~gk~~a~n~gl~~a---------~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~ 186 (229)
+.||+.|+|.|++.+ ..+++++.|+|+.++|++|. +++.+.+..+
T Consensus 130 g~~gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~pd~L~-~~~~l~~~~~ 184 (727)
T PRK11234 130 GPTSKADCLNNVLDAITQFERSANFAFAGFILHDAEDVISPMELR-LFNYLVERKD 184 (727)
T ss_pred CCCCHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCCCChhHHH-HHHhhcCCCC
Confidence 789999999999987 34678889999999999998 6677755333
No 51
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=99.74 E-value=7.6e-17 Score=131.83 Aligned_cols=122 Identities=17% Similarity=0.231 Sum_probs=97.5
Q ss_pred EEEEEeecCCCCC-hHHHHHHHHHHHHHhhhhcC-CCceEEEEEECCCCcchHH----HHHHHHHHcC-CCcEEEEEcCC
Q 027065 68 ISLIIPAFNEEHR-LPGALDETLNYLQQRAAKDK-SFTYEVLIIDDGSSDGTKR----VAFDFVRKYT-VDNVRIILLGR 140 (229)
Q Consensus 68 vsviip~~ne~~~-l~~~l~sl~~~~~~~~~~~~-~~~~eiivvdd~s~d~t~~----~~~~~~~~~~-~~~i~vi~~~~ 140 (229)
|||+||+|||+.. +.++|+++.+.+.. |. ++++||+++||++++.... .+.++.++++ ..++++++.++
T Consensus 1 ~SIliP~~ne~~~~l~~~l~~~~~~~~~----~~~~~~~eI~vldD~~d~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~~ 76 (254)
T cd04191 1 TAIVMPVYNEDPARVFAGLRAMYESLAK----TGLADHFDFFILSDTRDPDIWLAEEAAWLDLCEELGAQGRIYYRRRRE 76 (254)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHHHh----cCCcCceEEEEECCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 6999999999975 88999998876654 33 3789999999998765432 2333555554 34688888888
Q ss_pred CCC-HHHHHHHHHHh--cCCCEEEEEcCCCCCChhhHHHHHHHHHHhCCcceeecc
Q 027065 141 NHG-KGEAIRKGMLH--SRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGD 193 (229)
Q Consensus 141 ~~g-k~~a~n~gl~~--a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~ 193 (229)
+.| |++++|.++.. +++|||+++|+|..+.|++|.+++..+.++++.+++.+.
T Consensus 77 ~~g~Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~vg~vq~~ 132 (254)
T cd04191 77 NTGRKAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPRAGIIQTA 132 (254)
T ss_pred CCCccHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEeCC
Confidence 877 78899999986 788999999999999999999999999888877766443
No 52
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=99.73 E-value=1e-17 Score=136.47 Aligned_cols=103 Identities=21% Similarity=0.251 Sum_probs=81.5
Q ss_pred EEEeecCCC-CChHHHHHHHHHHHHHhhh--hcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHH
Q 027065 70 LIIPAFNEE-HRLPGALDETLNYLQQRAA--KDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGE 146 (229)
Q Consensus 70 viip~~ne~-~~l~~~l~sl~~~~~~~~~--~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~ 146 (229)
||||+|||+ ..|+++|+|+++|.++.+. +....++|||||+|||+| .|.||..
T Consensus 1 v~ip~yNE~~~~i~~~l~sv~~q~y~~~~~~~~~~~~~evivv~Dgs~d------------------------~~~gk~~ 56 (244)
T cd04190 1 VCVTMYNEDEEELARTLDSILKNDYPFCARGGDSWKKIVVCVIFDGAIK------------------------KNRGKRD 56 (244)
T ss_pred CEEeeecCCHHHHHHHHHHHHHhhHHHHhcCCCCccEEEEEEEeCCccc------------------------ccCcchH
Confidence 699999997 7999999999995442000 000238999999999999 2445543
Q ss_pred -------HHHHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHhCCcceeecccee
Q 027065 147 -------AIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVT 196 (229)
Q Consensus 147 -------a~n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 196 (229)
++|.++..+++|||+++|+|+.++|++|++++++|..+++.+.+.|....
T Consensus 57 ~~~~~~~~~~~~~~~a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v~g~~~~ 113 (244)
T cd04190 57 SQLWFFNYFCRVLFPDDPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCGEIHP 113 (244)
T ss_pred HHHHHHHHHHHHhhcCCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEEEeeeEE
Confidence 56888888999999999999999999999999999888887766665444
No 53
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=99.73 E-value=1.7e-17 Score=133.79 Aligned_cols=104 Identities=18% Similarity=0.274 Sum_probs=87.3
Q ss_pred EEEeecCCC-CChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHH
Q 027065 70 LIIPAFNEE-HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAI 148 (229)
Q Consensus 70 viip~~ne~-~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~ 148 (229)
+|||+||++ +.+.+||+|+.+ | ..|||||||+|+|.+....+. .. .+++++..++|.|++.|+
T Consensus 1 ~vI~~yn~~~~~l~~~l~sl~~--------q---~~~iivvDn~s~~~~~~~~~~---~~--~~i~~i~~~~n~G~~~a~ 64 (237)
T cd02526 1 AVVVTYNPDLSKLKELLAALAE--------Q---VDKVVVVDNSSGNDIELRLRL---NS--EKIELIHLGENLGIAKAL 64 (237)
T ss_pred CEEEEecCCHHHHHHHHHHHhc--------c---CCEEEEEeCCCCccHHHHhhc---cC--CcEEEEECCCceehHHhh
Confidence 589999999 999999999998 3 579999999999887655433 22 379999999999999999
Q ss_pred HHHHHhcCC---CEEEEEcCCCCCChhhHHHHH---HHHHHhCCcce
Q 027065 149 RKGMLHSRG---ELLLMLDADGATKVTDLEKLE---SQIHAVGRKEY 189 (229)
Q Consensus 149 n~gl~~a~~---d~v~~lD~D~~~~~~~l~~l~---~~~~~~~~~~~ 189 (229)
|.|++.+++ ||++++|+|+.++|++|++++ ..+.++++...
T Consensus 65 N~g~~~a~~~~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~ 111 (237)
T cd02526 65 NIGIKAALENGADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGA 111 (237)
T ss_pred hHHHHHHHhCCCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEE
Confidence 999999987 999999999999999999995 44444544443
No 54
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.67 E-value=3.2e-15 Score=136.08 Aligned_cols=117 Identities=11% Similarity=0.127 Sum_probs=93.8
Q ss_pred CCCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCC-
Q 027065 63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRN- 141 (229)
Q Consensus 63 ~~~p~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~- 141 (229)
...|.+||+||+|||+.++.+++++++.. ++|+++||+|+....+.+|.+.++++..++| ++++++.+.+
T Consensus 68 ~~~~~vsIlVPa~nE~~VI~~~v~~ll~~-------ldYp~~~I~v~~~~nD~~T~~~~~~~~~~~p--~~~~v~~~~~g 138 (703)
T PRK15489 68 RDEQPLAIMVPAWKEYDVIAKMIENMLAT-------LDYRRYVIFVGTYPNDAETITEVERMRRRYK--RLVRVEVPHDG 138 (703)
T ss_pred cCCCceEEEEeCCCcHHHHHHHHHHHHhc-------CCCCCeEEEEEecCCCccHHHHHHHHhccCC--cEEEEEcCCCC
Confidence 34567999999999999999999998752 5788999999655555588888999888888 7888776644
Q ss_pred -CCHHHHHHHHHHhc-------CCC--EEEEEcCCCCCChhhHHHHHHHHHHhCCcce
Q 027065 142 -HGKGEAIRKGMLHS-------RGE--LLLMLDADGATKVTDLEKLESQIHAVGRKEY 189 (229)
Q Consensus 142 -~gk~~a~n~gl~~a-------~~d--~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~ 189 (229)
.||+.|+|.|++.+ .++ .|++.|+|+.++|+.|..+ +++...++.++
T Consensus 139 p~gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~~~P~~L~~~-~~~~~~~~~iQ 195 (703)
T PRK15489 139 PTCKADCLNWIIQAIFRYEAGHGIEFAGVILHDSEDVLHPLELKYF-NYLLPRKDLVQ 195 (703)
T ss_pred CCCHHHHHHHHHHHHHhhhhhccCccceEEEEcCCCCCChhHHHHH-HhhcCCcceee
Confidence 78999999999875 333 4899999999999999876 55554455444
No 55
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=99.67 E-value=2.1e-15 Score=125.33 Aligned_cols=116 Identities=28% Similarity=0.361 Sum_probs=95.0
Q ss_pred EEEEeecCCCCC--hHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCC---CC
Q 027065 69 SLIIPAFNEEHR--LPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRN---HG 143 (229)
Q Consensus 69 sviip~~ne~~~--l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~---~g 143 (229)
|||||++++... +.+.|++++.++... +...++|||||||||++.+.+.++++.+... ..+++..+.+ .|
T Consensus 1 SiIIPv~~~~~~~~i~~~l~~~l~~l~~~---~~~~~~eiIvvd~~s~~~~~~~l~~~~~~~~--~~~~i~~~~~~~~f~ 75 (281)
T PF10111_consen 1 SIIIPVRNRSERPDILERLRNCLESLSQF---QSDPDFEIIVVDDGSSDEFDEELKKLCEKNG--FIRYIRHEDNGEPFS 75 (281)
T ss_pred CEEEEecCCccchHHHHHHHHHHHHHHhc---CCCCCEEEEEEECCCchhHHHHHHHHHhccC--ceEEEEcCCCCCCcC
Confidence 799999998853 666777777766653 4578999999999999998888888888766 4446665533 59
Q ss_pred HHHHHHHHHHhcCCCEEEEEcCCCCCChhhHHHHHH---HHHHhCCcce
Q 027065 144 KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLES---QIHAVGRKEY 189 (229)
Q Consensus 144 k~~a~n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~---~~~~~~~~~~ 189 (229)
++.|+|.|++.|++|+|+|+|+|+.++|+.+++++. .+..++....
T Consensus 76 ~a~arN~g~~~A~~d~l~flD~D~i~~~~~i~~~~~~~~~l~~~~~~~~ 124 (281)
T PF10111_consen 76 RAKARNIGAKYARGDYLIFLDADCIPSPDFIEKLLNHVKKLDKNPNAFL 124 (281)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCCeeeCHHHHHHHHHHHHHHhcCCCceE
Confidence 999999999999999999999999999999999999 6666554443
No 56
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=99.64 E-value=2.3e-15 Score=126.47 Aligned_cols=122 Identities=22% Similarity=0.254 Sum_probs=106.3
Q ss_pred CceEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCH
Q 027065 65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGK 144 (229)
Q Consensus 65 ~p~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk 144 (229)
+|.+++||++||..+.+.+||.++.+ |++...++++|||+|+|.+.+.+++.. ++ +++++.+++|.|.
T Consensus 2 ~~~i~~iiv~yn~~~~l~~~l~~l~~--------~~~~~~~iv~vDn~s~d~~~~~~~~~~--~~--~v~~i~~~~NlG~ 69 (305)
T COG1216 2 MPKISIIIVTYNRGEDLVECLASLAA--------QTYPDDVIVVVDNGSTDGSLEALKARF--FP--NVRLIENGENLGF 69 (305)
T ss_pred CcceEEEEEecCCHHHHHHHHHHHhc--------CCCCCcEEEEccCCCCCCCHHHHHhhc--CC--cEEEEEcCCCccc
Confidence 46799999999999999999999999 677788888999999999998887643 44 8999999999999
Q ss_pred HHHHHHHHHhcCCC---EEEEEcCCCCCChhhHHHHHHHHHHhCCcceeeccceeec
Q 027065 145 GEAIRKGMLHSRGE---LLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVD 198 (229)
Q Consensus 145 ~~a~n~gl~~a~~d---~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 198 (229)
+++.|.|++.|.++ |+++++.|..+.+++|+++++.+++.+....+.......+
T Consensus 70 agg~n~g~~~a~~~~~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~ 126 (305)
T COG1216 70 AGGFNRGIKYALAKGDDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYD 126 (305)
T ss_pred hhhhhHHHHHHhcCCCcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCC
Confidence 99999999998654 9999999999999999999999999887666544444433
No 57
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=99.62 E-value=4.8e-15 Score=122.98 Aligned_cols=98 Identities=18% Similarity=0.212 Sum_probs=82.0
Q ss_pred eecCCC-CChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHH
Q 027065 73 PAFNEE-HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKG 151 (229)
Q Consensus 73 p~~ne~-~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n~g 151 (229)
.+||++ +.+++||+++.+ | ..|||||||||++. +.+++..+.++ ++++++.++|.|.++|+|.|
T Consensus 1 Vtyn~~~~~l~~~l~sl~~--------q---~~~iiVVDN~S~~~--~~~~~~~~~~~--~i~~i~~~~N~G~a~a~N~G 65 (281)
T TIGR01556 1 VTFNPDLEHLGELITSLPK--------Q---VDRIIAVDNSPHSD--QPLKNARLRGQ--KIALIHLGDNQGIAGAQNQG 65 (281)
T ss_pred CccCccHHHHHHHHHHHHh--------c---CCEEEEEECcCCCc--HhHHHHhccCC--CeEEEECCCCcchHHHHHHH
Confidence 379975 788899998888 3 36999999999765 22333334445 89999999999999999999
Q ss_pred HHhc---CCCEEEEEcCCCCCChhhHHHHHHHHHHhC
Q 027065 152 MLHS---RGELLLMLDADGATKVTDLEKLESQIHAVG 185 (229)
Q Consensus 152 l~~a---~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~ 185 (229)
++.| .+|||+++|+|+.+++++++++++.+++.+
T Consensus 66 i~~a~~~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~ 102 (281)
T TIGR01556 66 LDASFRRGVQGVLLLDQDSRPGNAFLAAQWKLLSAEN 102 (281)
T ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHhcC
Confidence 9998 689999999999999999999999998754
No 58
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=99.61 E-value=1.4e-14 Score=107.37 Aligned_cols=113 Identities=34% Similarity=0.494 Sum_probs=96.7
Q ss_pred EEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHH
Q 027065 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR 149 (229)
Q Consensus 70 viip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n 149 (229)
|+||++|+.+.++.+++++.+ +.+.+.|++++||++++.+.+.+++...... ....+...++.|++.++|
T Consensus 1 iii~~~~~~~~l~~~l~s~~~--------~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~ 70 (156)
T cd00761 1 VIIPAYNEEPYLERCLESLLA--------QTYPNFEVIVVDDGSTDGTLEILEEYAKKDP--RVIRVINEENQGLAAARN 70 (156)
T ss_pred CEEeecCcHHHHHHHHHHHHh--------CCccceEEEEEeCCCCccHHHHHHHHHhcCC--CeEEEEecCCCChHHHHH
Confidence 589999999999999999988 5556899999999999999999988866523 566777778999999999
Q ss_pred HHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHhCCcceeec
Q 027065 150 KGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHG 192 (229)
Q Consensus 150 ~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~ 192 (229)
.|++.+.+|+++++|+|+.+.++++..++..+...++..+..+
T Consensus 71 ~~~~~~~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (156)
T cd00761 71 AGLKAARGEYILFLDADDLLLPDWLERLVAELLADPEADAVGG 113 (156)
T ss_pred HHHHHhcCCEEEEECCCCccCccHHHHHHHHHhcCCCceEEec
Confidence 9999999999999999999999999999777766665554433
No 59
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=99.45 E-value=2.2e-12 Score=107.12 Aligned_cols=130 Identities=18% Similarity=0.236 Sum_probs=114.1
Q ss_pred CCCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCC
Q 027065 63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNH 142 (229)
Q Consensus 63 ~~~p~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~ 142 (229)
+..|.|||+.|..+-++++...+++.+. ..|+++|++++-+.++|+..++++++.++||....+++...+..
T Consensus 82 ~~LPgVSiikPl~G~d~nl~~Nlesfft--------s~Y~~~ElLfcv~s~eDpAi~vv~~Ll~kyp~VdAklf~gG~~v 153 (431)
T KOG2547|consen 82 PKLPGVSIIKPLKGVDPNLYHNLESFFT--------SQYHKYELLFCVESSEDPAIEVVERLLKKYPNVDAKLFFGGEKV 153 (431)
T ss_pred CCCCCceEEeecccCCchhHHhHHHHHh--------hccCceEEEEEEccCCCcHHHHHHHHHhhCCCcceEEEEccccc
Confidence 4678899999999999999999999888 34669999999999999999999999999997778999988888
Q ss_pred C---HHHHHHHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHhCCcceeeccceeecCc
Q 027065 143 G---KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDST 200 (229)
Q Consensus 143 g---k~~a~n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 200 (229)
| |..++--|.+.|++|+|++.|+|..+.||.+..|...+.++...+.+++.....+..
T Consensus 154 g~npKInN~mpgy~~a~ydlvlisDsgI~m~pdtildm~t~M~shekmalvtq~py~~dr~ 214 (431)
T KOG2547|consen 154 GLNPKINNMMPGYRAAKYDLVLISDSGIFMKPDTILDMATTMMSHEKMALVTQTPYCKDRQ 214 (431)
T ss_pred ccChhhhccCHHHHHhcCCEEEEecCCeeecCchHHHHHHhhhcccceeeecCCceeeccc
Confidence 8 555555688999999999999999999999999999999888888887766655544
No 60
>KOG3738 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1.4e-12 Score=109.18 Aligned_cols=115 Identities=20% Similarity=0.201 Sum_probs=97.0
Q ss_pred CCceEEEEEeecCCC-CChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCC
Q 027065 64 AEKYISLIIPAFNEE-HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNH 142 (229)
Q Consensus 64 ~~p~vsviip~~ne~-~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~ 142 (229)
..|..||||..+||+ ..+-+++.|++++.-+. --.|||+|||+|.|.+. .+.+ .+.+ +++++++.++.
T Consensus 122 dlp~TsviITfHNEARS~LLRTv~SvlnrsP~~------li~EiILVDD~S~Dped--~~~L-~ri~--kvr~LRN~~Re 190 (559)
T KOG3738|consen 122 DLPPTSVIITFHNEARSTLLRTVVSVLNRSPEH------LIHEIILVDDFSQDPED--GKLL-KRIP--KVRVLRNNERE 190 (559)
T ss_pred CCCCceEEEEeccHHHHHHHHHHHHHHcCChHH------hhheeEEecCCCCChHH--HHHH-hhhh--eeeeecccchh
Confidence 467899999999999 78889999999854432 24699999999998653 3332 3444 89999999999
Q ss_pred CHHHHHHHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHhCCcce
Q 027065 143 GKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEY 189 (229)
Q Consensus 143 gk~~a~n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~ 189 (229)
|....++.|...|.+.++.|+|+.+.+..+||+.|++.+.+++..++
T Consensus 191 GLirSRvrGAdvA~a~vltFLDSHcEvN~~WLePLL~Rvaed~trvV 237 (559)
T KOG3738|consen 191 GLIRSRVRGADVAQATVLTFLDSHCEVNEGWLEPLLERVAEDTTRVV 237 (559)
T ss_pred hhhhhhccccccccceEEEEEecceeecchhhHHHHHHHhhccccee
Confidence 99999999999999999999999999999999999999988775443
No 61
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=99.28 E-value=7.3e-11 Score=99.39 Aligned_cols=116 Identities=16% Similarity=0.125 Sum_probs=89.8
Q ss_pred EEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC----CCC
Q 027065 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR----NHG 143 (229)
Q Consensus 68 vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~----~~g 143 (229)
+.|+|.+||..+.++++|++++++- ....+++|+|.+||+++++.+.++.+.. .++++..+. +.|
T Consensus 2 ~PVlv~ayNRp~~l~r~LesLl~~~------p~~~~~~liIs~DG~~~~~~~~v~~~~~-----~i~~i~~~~~~~~~~~ 70 (334)
T cd02514 2 IPVLVIACNRPDYLRRMLDSLLSYR------PSAEKFPIIVSQDGGYEEVADVAKSFGD-----GVTHIQHPPISIKNVN 70 (334)
T ss_pred cCEEEEecCCHHHHHHHHHHHHhcc------ccCCCceEEEEeCCCchHHHHHHHhhcc-----ccEEEEcccccccccC
Confidence 5689999999999999999999931 0456899999999999988888877631 356555431 222
Q ss_pred ----------HH----HHHHHHHHhcCCCEEEEEcCCCCCChh---hHHHHHHHHHHhCCcceeeccc
Q 027065 144 ----------KG----EAIRKGMLHSRGELLLMLDADGATKVT---DLEKLESQIHAVGRKEYNHGDS 194 (229)
Q Consensus 144 ----------k~----~a~n~gl~~a~~d~v~~lD~D~~~~~~---~l~~l~~~~~~~~~~~~~~~~~ 194 (229)
.+ .|+|.++...++++++++|+|+.++|+ ++++++..+++++...++.+.-
T Consensus 71 ~~~~~~~y~~ia~hyk~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ISa~N 138 (334)
T cd02514 71 PPHKFQGYYRIARHYKWALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWCISAWN 138 (334)
T ss_pred cccccchhhHHHHHHHHHHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEEEEeec
Confidence 23 389999988899999999999999999 4577777777777777766643
No 62
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=7.5e-12 Score=104.67 Aligned_cols=117 Identities=21% Similarity=0.255 Sum_probs=102.3
Q ss_pred CCCCceEEEEEeecCCC-CChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcc-hHHHHHHHHHHcCCCcEEEEEcC
Q 027065 62 DPAEKYISLIIPAFNEE-HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDG-TKRVAFDFVRKYTVDNVRIILLG 139 (229)
Q Consensus 62 ~~~~p~vsviip~~ne~-~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~-t~~~~~~~~~~~~~~~i~vi~~~ 139 (229)
+...|..||||..+||. ..+-+++.|++...... .--|||+|||-|+.+ ..+.+.++...+. ..++|++++
T Consensus 151 pe~Lpt~SVviVFHNEGws~LmRTVHSVi~RsP~~------~l~eivlvDDfSdKehLkekLDeYv~~fn-GlVkV~Rne 223 (603)
T KOG3737|consen 151 PENLPTSSVVIVFHNEGWSTLMRTVHSVIKRSPRK------YLAEIVLVDDFSDKEHLKEKLDEYVKLFN-GLVKVFRNE 223 (603)
T ss_pred cccCCcceEEEEEecCccHHHHHHHHHHHhcCcHH------hhheEEEeccCCccHHHHHHHHHHHHHhc-CEEEEEecc
Confidence 34678999999999998 88999999988743332 246999999999866 6699999999988 478999999
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHhC
Q 027065 140 RNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVG 185 (229)
Q Consensus 140 ~~~gk~~a~n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~ 185 (229)
++.|...|+..|.+.|+|+.++|+|+.|.+..+|+..+++.+..+.
T Consensus 224 ~REGLI~aRSiGA~~atGeV~ifLDAHCEVntNWlpPLlAPI~rdR 269 (603)
T KOG3737|consen 224 RREGLIQARSIGAQKATGEVLIFLDAHCEVNTNWLPPLLAPISRDR 269 (603)
T ss_pred hhhhhhhhhccchhhccccEEEEEecceeeecccccccccccccCc
Confidence 9999999999999999999999999999999999999999997654
No 63
>KOG3736 consensus Polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=5.7e-12 Score=111.88 Aligned_cols=119 Identities=24% Similarity=0.276 Sum_probs=103.5
Q ss_pred CCCceEEEEEeecCCC-CChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcch-HHHHHHHHHHcCCCcEEEEEcCC
Q 027065 63 PAEKYISLIIPAFNEE-HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGT-KRVAFDFVRKYTVDNVRIILLGR 140 (229)
Q Consensus 63 ~~~p~vsviip~~ne~-~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t-~~~~~~~~~~~~~~~i~vi~~~~ 140 (229)
...|..||||+.+||. ..+.+++.|+++.... +---|||+|||+|+..- ...++++.+++. .+++++.++
T Consensus 139 ~~Lp~~Svii~f~nE~~s~llRtv~Svi~rtp~------~lLkEIiLVdD~S~~~~l~~~Ld~y~k~~~--~v~i~r~~~ 210 (578)
T KOG3736|consen 139 DKLPTTSVIIIFHNEAWSTLLRTVHSVINRTPP------YLLKEIILVDDFSDRDHLKDKLEEYVKRFS--KVRILRTKK 210 (578)
T ss_pred cccCCCceEEEEecCCCcchhheEEeehccCCh------hHeEEEEEeecCcchhhhhhhhHHHHhhhc--ceeEEeecc
Confidence 4578999999999999 7888888888885433 23579999999998664 577899999988 599999999
Q ss_pred CCCHHHHHHHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHhCCcce
Q 027065 141 NHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEY 189 (229)
Q Consensus 141 ~~gk~~a~n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~ 189 (229)
+.|...|+..|.+.|+||+++|+|+.+....+||+.+++.+..+...+.
T Consensus 211 R~GLIrARl~GA~~A~geVL~FLDsHcE~n~gWLePLL~~I~~~r~tvv 259 (578)
T KOG3736|consen 211 REGLIRARLLGASMATGEVLTFLDSHCEVNVGWLEPLLARIAEDRKTVV 259 (578)
T ss_pred hhhhHHHHhhhhhhhhchheeeeecceeEecCcchHHHHHhhhcCceee
Confidence 9999999999999999999999999999999999999999988765443
No 64
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.98 E-value=4.9e-08 Score=85.03 Aligned_cols=121 Identities=19% Similarity=0.222 Sum_probs=88.3
Q ss_pred ceEEEEEeecCCC-CChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHH-----HHHHHc-CCCcEEEEEc
Q 027065 66 KYISLIIPAFNEE-HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAF-----DFVRKY-TVDNVRIILL 138 (229)
Q Consensus 66 p~vsviip~~ne~-~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~-----~~~~~~-~~~~i~vi~~ 138 (229)
-...|++|+|||+ ..+-.-|+.+.+++.+. -...+|++.|+.|..+.+. ...+ +++++. ...++.+-+.
T Consensus 144 hrTAilmPiynEd~~rVfAgLrA~~eSla~T---g~~~~FD~FVLSDs~dpdi-alAEq~a~~~l~~e~~g~~~ifYRrR 219 (736)
T COG2943 144 HRTAILMPIYNEDVNRVFAGLRATYESLAAT---GHAEHFDFFVLSDSRDPDI-ALAEQKAWAELCRELGGEGNIFYRRR 219 (736)
T ss_pred cceeEEeeccccCHHHHHHHHHHHHHHHHhh---CCcccceEEEEcCCCCchh-hhhHHHHHHHHHHHhCCCCceeeehH
Confidence 3489999999999 56666777777777664 3456899999999655442 2222 223332 2346777666
Q ss_pred CCCCC-HHHHHHHHHHhc--CCCEEEEEcCCCCCChhhHHHHHHHHHHhCCccee
Q 027065 139 GRNHG-KGEAIRKGMLHS--RGELLLMLDADGATKVTDLEKLESQIHAVGRKEYN 190 (229)
Q Consensus 139 ~~~~g-k~~a~n~gl~~a--~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~ 190 (229)
.+|.| |++++..=.++= .+++.+++|+|..++++++.++++.++.+|+.++.
T Consensus 220 r~n~~RKaGNIaDfcrRwG~~Y~~MlVLDADSvMtgd~lvrLv~~ME~~P~aGlI 274 (736)
T COG2943 220 RRNVKRKAGNIADFCRRWGSAYSYMLVLDADSVMTGDCLVRLVRLMEANPDAGLI 274 (736)
T ss_pred hhhhcccccCHHHHHHHhCcccceEEEeecccccCchHHHHHHHHHhhCCCCcee
Confidence 66766 666666655553 57999999999999999999999999999988764
No 65
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=98.36 E-value=2.3e-06 Score=59.41 Aligned_cols=83 Identities=27% Similarity=0.231 Sum_probs=55.0
Q ss_pred cCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCC---H-HHHHHH
Q 027065 75 FNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG---K-GEAIRK 150 (229)
Q Consensus 75 ~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~g---k-~~a~n~ 150 (229)
+||+..|++.|+.-.+ -.--+++|+||||+|+|.++++++ + .+.++....... . ...++.
T Consensus 1 rne~~~L~~wl~~~~~----------lG~d~i~i~d~~s~D~t~~~l~~~----~--~v~i~~~~~~~~~~~~~~~~~~~ 64 (97)
T PF13704_consen 1 RNEADYLPEWLAHHLA----------LGVDHIYIYDDGSTDGTREILRAL----P--GVGIIRWVDPYRDERRQRAWRNA 64 (97)
T ss_pred CChHHHHHHHHHHHHH----------cCCCEEEEEECCCCccHHHHHHhC----C--CcEEEEeCCCccchHHHHHHHHH
Confidence 5777777666665544 113479999999999999998776 3 566665543221 2 223333
Q ss_pred HHHh-cCCCEEEEEcCCCCCChhh
Q 027065 151 GMLH-SRGELLLMLDADGATKVTD 173 (229)
Q Consensus 151 gl~~-a~~d~v~~lD~D~~~~~~~ 173 (229)
..+. ..++|++++|+|..+.+..
T Consensus 65 ~~~~~~~~dWvl~~D~DEfl~~~~ 88 (97)
T PF13704_consen 65 LIERAFDADWVLFLDADEFLVPPP 88 (97)
T ss_pred HHHhCCCCCEEEEEeeeEEEecCC
Confidence 3344 3679999999999875543
No 66
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=98.11 E-value=6.6e-06 Score=65.83 Aligned_cols=87 Identities=20% Similarity=0.181 Sum_probs=58.3
Q ss_pred EEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHH
Q 027065 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEA 147 (229)
Q Consensus 68 vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a 147 (229)
||||+ +.|.+...++|++++.+ +..++.|.|-+++ .....+.+.+
T Consensus 1 isiI~-c~n~~~~~~~~~~~i~~--------~~~~~~~~i~i~~--------------------------~~~~~s~~~~ 45 (217)
T PF13712_consen 1 ISIII-CVNDEELYEECLRSIKR--------LIGPPGELIEIDN--------------------------VRNAKSMAAA 45 (217)
T ss_dssp EEEEE-EES-HHHHHHHHHHHHH--------TT--TEEEEEEE---------------------------SSS-S-TTTH
T ss_pred CEEEE-EECCHHHHHHHHHHHHh--------hCCCCceEEEEec--------------------------cCCCcCHHHH
Confidence 34444 45665667778877776 3445566555443 3334667789
Q ss_pred HHHHHHhcCCCEEEEEcCCCCC-ChhhHHHHHHHHHHhCCcce
Q 027065 148 IRKGMLHSRGELLLMLDADGAT-KVTDLEKLESQIHAVGRKEY 189 (229)
Q Consensus 148 ~n~gl~~a~~d~v~~lD~D~~~-~~~~l~~l~~~~~~~~~~~~ 189 (229)
.|.|++.|+++|++|+..|..+ +++|+..+++.+++.++.+.
T Consensus 46 yN~a~~~a~~~ylvflHqDv~i~~~~~l~~il~~~~~~~~~G~ 88 (217)
T PF13712_consen 46 YNEAMEKAKAKYLVFLHQDVFIINENWLEDILEIFEEDPNIGM 88 (217)
T ss_dssp HHHHGGG--SSEEEEEETTEE-SSHHHHHHHHHHHHH-TTEEE
T ss_pred HHHHHHhCCCCEEEEEeCCeEEcchhHHHHHHHHHhhCCCccE
Confidence 9999999999999999999998 68999999999987787644
No 67
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=98.08 E-value=0.00012 Score=65.56 Aligned_cols=126 Identities=18% Similarity=0.223 Sum_probs=84.3
Q ss_pred ceEEEEEeecCCC-CChHHHHHHHHHHHHHhhhhcCCCceEEEEEECC------CCcchHHHHHHHHHH--c----CC--
Q 027065 66 KYISLIIPAFNEE-HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDG------SSDGTKRVAFDFVRK--Y----TV-- 130 (229)
Q Consensus 66 p~vsviip~~ne~-~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~------s~d~t~~~~~~~~~~--~----~~-- 130 (229)
+.+-.+||||||. +.|..+|+|+..+- ++..+-=|+||-|| .+..|.+++.+.... . +.
T Consensus 25 ~~~i~~v~cy~E~~~~l~~tldsl~~~~------y~~~~k~~~vi~DG~i~g~g~~~~tp~~~l~~~~~~~~~~~~~~~~ 98 (527)
T PF03142_consen 25 KFVICLVPCYSEGEEELRTTLDSLATTD------YDDSRKLIFVICDGMIKGSGNDKTTPEIVLDILGDFVDPPEDPEPL 98 (527)
T ss_pred ceEEEEEccccCChHHHHHHHHHHHhcC------CCCcccEEEEEcCcEEecCCCCCChHHHHHHhhcccCCCcCCCCCc
Confidence 4466799999998 67777888876632 23334456666666 355688888776550 0 00
Q ss_pred --------------------------------------CcEEEEE----------cCCCCCHHHHHHHHHHh--------
Q 027065 131 --------------------------------------DNVRIIL----------LGRNHGKGEAIRKGMLH-------- 154 (229)
Q Consensus 131 --------------------------------------~~i~vi~----------~~~~~gk~~a~n~gl~~-------- 154 (229)
|-+.|+. .+.|+||.-..-..+..
T Consensus 99 ~~~~~~~g~~~~n~~~vy~g~y~~~~~~~~~~~~~~~vp~~~vvk~g~~~e~~~~k~~NrGKRDsq~~~~~fl~~~~~~~ 178 (527)
T PF03142_consen 99 SYVSLGEGSKQHNMAKVYSGFYEYDGDSHVPPEKQQRVPYIVVVKCGTPSERSSPKPGNRGKRDSQILLMSFLNKVHFNN 178 (527)
T ss_pred ceEEeccCchhhcCEEEEEEEEecCCccccccccccccCEEEEEEcCChHHhcccccccCCchHHHHHHHHHHHHHhcCC
Confidence 1123333 35688887554332221
Q ss_pred ---------------------cCCCEEEEEcCCCCCChhhHHHHHHHHHHhCCcceeeccceee
Q 027065 155 ---------------------SRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTV 197 (229)
Q Consensus 155 ---------------------a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 197 (229)
...||++.+|+|+.+.|+.+.+|++.+.++++...+.|.....
T Consensus 179 ~~~~~~~e~~~~i~~~~g~~~~~~~~il~~DaDt~~~p~~~~~lv~~m~~d~~i~gvCG~t~i~ 242 (527)
T PF03142_consen 179 PMTPLELELFHQIWNIIGVDPDFYEYILMVDADTKFDPDSVNRLVDAMERDPKIGGVCGETRID 242 (527)
T ss_pred CCchHHHHHHHHHHHHhccCccceEEEEEecCCceEcHHHHHHHHHHHcCCCCeEEEeceeEEc
Confidence 1359999999999999999999999999999888877754433
No 68
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=98.06 E-value=1.6e-05 Score=61.51 Aligned_cols=58 Identities=19% Similarity=0.279 Sum_probs=48.1
Q ss_pred EEEEcCCCCC---HHHHHHHHHHh-cCCCEEEEEcCCCCCChhhHHHHHHHHHHhCCcceeec
Q 027065 134 RIILLGRNHG---KGEAIRKGMLH-SRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHG 192 (229)
Q Consensus 134 ~vi~~~~~~g---k~~a~n~gl~~-a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~ 192 (229)
+++..++..| |..++..+++. +++|+++++|+|..++|++|.+++..+++ ++.+++.+
T Consensus 5 ~lvv~~~~~g~N~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~-p~vglVt~ 66 (175)
T PF13506_consen 5 RLVVGGPPRGCNPKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLAD-PGVGLVTG 66 (175)
T ss_pred EEEECCCCCCCChHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhC-CCCcEEEe
Confidence 3555554443 99999999998 99999999999999999999999999987 55555544
No 69
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=97.88 E-value=0.00011 Score=64.04 Aligned_cols=108 Identities=17% Similarity=0.212 Sum_probs=65.1
Q ss_pred CCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC---
Q 027065 64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR--- 140 (229)
Q Consensus 64 ~~p~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~--- 140 (229)
..+.+-|+|-+||....+.+||+++++.- .....+.|+|..||+...+.++++++... +++++.+.
T Consensus 91 ~~~~~pVlV~AcNRp~yl~r~L~sLl~~r------p~~~~fpIiVSQDg~~~~~~~vi~~y~~~-----v~~i~~~~~~~ 159 (434)
T PF03071_consen 91 KEPVIPVLVFACNRPDYLRRTLDSLLKYR------PSAEKFPIIVSQDGDDEEVAEVIKSYGDQ-----VTYIQHPDFSP 159 (434)
T ss_dssp ------EEEEESS-TT-HHHHHHHHHHH-------S-TTTS-EEEEE-TT-HHHHHHHHGGGGG-----SEEEE-S--S-
T ss_pred CCCcceEEEEecCCcHHHHHHHHHHHHcC------CCCCCccEEEEecCCcHHHHHHHHHhhhh-----heeeecCCcCC
Confidence 45678999999999999999999999832 12346889999999999998888877433 33333221
Q ss_pred -----CC-------CHH----HHHHHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHH
Q 027065 141 -----NH-------GKG----EAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIH 182 (229)
Q Consensus 141 -----~~-------gk~----~a~n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~ 182 (229)
.. +.+ .|++..+..-+.+.++++.+|..++||+++.+.+...
T Consensus 160 i~~~~~~~~~~~y~~IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~~~~~ 217 (434)
T PF03071_consen 160 ITIPPKEKKFKGYYKIARHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFSATLP 217 (434)
T ss_dssp ----TT-GGGHHHHHHHHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHHHHHH
T ss_pred ceeCcccccccchHHHHHHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHHHHHH
Confidence 00 011 2334444434679999999999999999887766653
No 70
>PF09488 Osmo_MPGsynth: Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth); InterPro: IPR012812 This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together with mannosyl-3-phosphoglycerate phosphatase (MPGP), comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus (Rhodothermus obamensis), this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.; GO: 0050504 mannosyl-3-phosphoglycerate synthase activity, 0051479 mannosylglycerate biosynthetic process, 0005737 cytoplasm; PDB: 2WVM_A 2WVL_A 2WVK_A 2ZU7_B 2ZU9_B 2ZU8_A.
Probab=97.68 E-value=0.00045 Score=58.11 Aligned_cols=104 Identities=19% Similarity=0.314 Sum_probs=62.5
Q ss_pred eEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCC---cch---HHHHHHHHHHcCCCcEEEEEcCC
Q 027065 67 YISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSS---DGT---KRVAFDFVRKYTVDNVRIILLGR 140 (229)
Q Consensus 67 ~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~---d~t---~~~~~~~~~~~~~~~i~vi~~~~ 140 (229)
..+||||+.||. ...|+-++..+ +.++-||||.|++. |.- .+.++++...-. ..+-+++...
T Consensus 51 ~maIVVP~KnE~---l~lleGVL~gI--------Ph~C~IIvVSNS~r~~~d~f~~E~d~l~~f~~~t~-r~~~~vHQkD 118 (381)
T PF09488_consen 51 KMAIVVPCKNEK---LKLLEGVLSGI--------PHDCLIIVVSNSSREPVDRFKMEVDLLKHFCRLTR-RQIIIVHQKD 118 (381)
T ss_dssp TEEEEEEESS-----HHHHHHHHHCS---------TTSEEEEEE---CSSSCHHHHHHHHHHHHHHHCT---EEEEETT-
T ss_pred CcEEEEECCCCc---hhhhhhhhhcC--------CCCCeEEEEECCCCCCccHHHHHHHHHHHHHHhhc-CceEEEecCC
Confidence 599999999999 45577777733 23688999999887 442 255566655432 2455555421
Q ss_pred ----------------------CCCHHHHHHHHHHhcC---CCEEEEEcCCCCCChhhHHHHHHHHHH
Q 027065 141 ----------------------NHGKGEAIRKGMLHSR---GELLLMLDADGATKVTDLEKLESQIHA 183 (229)
Q Consensus 141 ----------------------~~gk~~a~n~gl~~a~---~d~v~~lD~D~~~~~~~l~~l~~~~~~ 183 (229)
+-||+.++-.|+..|+ .+||-|+|+|..++ +.+.+-++.+..
T Consensus 119 p~lA~Af~~aGy~~il~~~g~VR~GKgEGMiiGillAk~~g~~YVGFvDADNyiP-GaV~EYvk~yAA 185 (381)
T PF09488_consen 119 PGLAEAFKEAGYPEILDEDGLVRNGKGEGMIIGILLAKAPGKRYVGFVDADNYIP-GAVNEYVKDYAA 185 (381)
T ss_dssp HHHHHHHHHTT--TTB-TTSSB-SSHHHHHHHHHHHHHHTT-SEEEE--TTBS-H-HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHhCCCCceecCchHHHHHHHHHHHhcCCceEeEeeccCCCc-chHHHHHHHHHh
Confidence 3589999999998774 59999999999875 445454554543
No 71
>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni [].
Probab=97.68 E-value=0.00024 Score=58.83 Aligned_cols=106 Identities=19% Similarity=0.168 Sum_probs=79.2
Q ss_pred ceEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEE-------c
Q 027065 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIIL-------L 138 (229)
Q Consensus 66 p~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~-------~ 138 (229)
-..+-.|-+.||+..|+++|+|++..++ |.|+.=+.|+|+|.|++.++++++|. -+.+.. +
T Consensus 87 l~~~~~iRvKnE~~tl~~si~S~Lpai~-----------~gVI~yNdc~D~t~Eiil~fckkyP~-fip~~Ypy~v~~~n 154 (347)
T PF06306_consen 87 LNPWAFIRVKNEAMTLAESIESILPAID-----------EGVIGYNDCTDGTEEIILEFCKKYPS-FIPIKYPYEVIIKN 154 (347)
T ss_pred CCcceEEEEcchhhhHHHHHHHHHHHHh-----------ccEEEeecCCCCHHHHHHHHHHhCcc-cccccCcchhhccC
Confidence 3588899999999999999999999775 67888888999999999999999993 222211 1
Q ss_pred CC--CCCHHHHHHHHHHhc-CCCEEEEEcCCCCCChhhHHHHHHHHHH
Q 027065 139 GR--NHGKGEAIRKGMLHS-RGELLLMLDADGATKVTDLEKLESQIHA 183 (229)
Q Consensus 139 ~~--~~gk~~a~n~gl~~a-~~d~v~~lD~D~~~~~~~l~~l~~~~~~ 183 (229)
++ +.....=.|.++... +++|++=+|+|....+..|-+..-...+
T Consensus 155 ~~~~~n~l~~YYNy~ls~ipk~~w~iKID~DhIy~~~KL~ksfY~pk~ 202 (347)
T PF06306_consen 155 PKSEENSLYNYYNYVLSFIPKNEWAIKIDADHIYDTKKLYKSFYIPKN 202 (347)
T ss_pred CchhhhhhhhhhhhhhcccccceEEEEeccceeecHHHHhhhheeecc
Confidence 11 112333456666664 5899999999999999987555443333
No 72
>PF11316 Rhamno_transf: Putative rhamnosyl transferase ; InterPro: IPR021466 This bacterial family of proteins has no known function.
Probab=97.57 E-value=0.0012 Score=53.27 Aligned_cols=89 Identities=18% Similarity=0.275 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHhhhhcCCCceEEEEE-ECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHhc---CCCE
Q 027065 84 ALDETLNYLQQRAAKDKSFTYEVLII-DDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS---RGEL 159 (229)
Q Consensus 84 ~l~sl~~~~~~~~~~~~~~~~eiivv-dd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n~gl~~a---~~d~ 159 (229)
||.|+.. |+.++|+++|+ ++...+.-.+.++++.+.+| .++++..+. .....++..+++.+ .+++
T Consensus 47 ~LpSl~~--------QTd~dF~~lv~~~~~~P~~~~~rL~~l~~~~p--~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~ 115 (234)
T PF11316_consen 47 CLPSLRA--------QTDQDFTWLVLFDDDLPEPYRERLRDLLADYP--QFRIVFRPP-GPHRDAMRRAINAARRDGADP 115 (234)
T ss_pred HhhHHHh--------ccCCCeEEEEEECCCCCHHHHHHHHHHhccCC--CcEEEecCC-chHHHHHHHHHhhhccCCCCE
Confidence 5556666 78889999885 45555666788999988888 777777653 33666777776433 3465
Q ss_pred EEE--EcCCCCCChhhHHHHHHHHHH
Q 027065 160 LLM--LDADGATKVTDLEKLESQIHA 183 (229)
Q Consensus 160 v~~--lD~D~~~~~~~l~~l~~~~~~ 183 (229)
++. +|+|+.++.++++++-+...+
T Consensus 116 ~~~~RLDdDDAl~~dFV~rlr~~a~~ 141 (234)
T PF11316_consen 116 VLQFRLDDDDALHRDFVARLRRAAAD 141 (234)
T ss_pred EEEEEECCcchhhHHHHHHHHHHHHh
Confidence 554 699999999999999999853
No 73
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase. This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.
Probab=97.56 E-value=0.00046 Score=57.74 Aligned_cols=105 Identities=19% Similarity=0.280 Sum_probs=67.7
Q ss_pred ceEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcc------hHHHHHHHHHHcCCCcEEEEEcC
Q 027065 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDG------TKRVAFDFVRKYTVDNVRIILLG 139 (229)
Q Consensus 66 p~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~------t~~~~~~~~~~~~~~~i~vi~~~ 139 (229)
....||||+.||.- ..|+-++..+ +.++-||||.|++..+ -.+.++.+.+--. ..+-+++..
T Consensus 50 ~~maIVVP~KdE~l---~lleGVL~gI--------Ph~c~iIvVSNS~r~~~d~f~~E~d~~~~f~~~t~-r~~i~vHQk 117 (381)
T TIGR02460 50 GKTAIVVPVKNEKL---HLLEGVLSGI--------PHECPIIIVSNSKREPPDRFKMEVDLIRHFSNLTH-RKIIIIHQK 117 (381)
T ss_pred hCcEEEEEcCCCch---hHHhhHhhcC--------CCCCeEEEEeCCCCCChhHHHHHHHHHHHHHHhhc-CceEEEEcC
Confidence 46899999999993 4466666632 2267889999987632 1234444443222 234444432
Q ss_pred C----------------------CCCHHHHHHHHHHhcC---CCEEEEEcCCCCCChhhHHHHHHHHHH
Q 027065 140 R----------------------NHGKGEAIRKGMLHSR---GELLLMLDADGATKVTDLEKLESQIHA 183 (229)
Q Consensus 140 ~----------------------~~gk~~a~n~gl~~a~---~d~v~~lD~D~~~~~~~l~~l~~~~~~ 183 (229)
. +-||+.++-.|+..|+ .+||-|+|+|..++.. +.+-+..+..
T Consensus 118 Dp~la~Af~~~gy~~il~~~g~VR~GKgEGMiiG~lLAk~~g~~YVGFiDaDNyiPGa-V~EYvk~yAa 185 (381)
T TIGR02460 118 DPALAEAFKEVGYTSILGENGRVRSGKGEGMLLGLLLAKAIGAEYVGFVDADNYFPGA-VNEYVKIYAA 185 (381)
T ss_pred CHHHHHHHHHcCchhhhCCCCceecCcchHHHHHHHHHHHhCCceEeEeecccCCCch-HHHHHHHHHh
Confidence 1 2589999999987774 5999999999998654 4444444443
No 74
>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional
Probab=97.55 E-value=0.00045 Score=58.12 Aligned_cols=104 Identities=17% Similarity=0.286 Sum_probs=67.1
Q ss_pred ceEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCC---cch---HHHHHHHHHHcCCCcEEEEEcC
Q 027065 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSS---DGT---KRVAFDFVRKYTVDNVRIILLG 139 (229)
Q Consensus 66 p~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~---d~t---~~~~~~~~~~~~~~~i~vi~~~ 139 (229)
....||||+.||.- ..|+-++..+ +.++-||||.|++. |.- .+.++.+.+--. ..+-+++..
T Consensus 51 ~~mAIVVP~KdE~l---~lleGVL~gI--------Ph~c~iIvVSNS~r~~~d~f~~E~dlv~~f~~~t~-r~~i~vHQk 118 (393)
T PRK14503 51 GRMAIVVPVKNERL---KLLEGVLKGI--------PHECPIIVVSNSKREPPDRFKLEVDLVRHFYRLTQ-RPIIIVHQK 118 (393)
T ss_pred hCcEEEEEcCCCch---hHHhhHhhcC--------CCCCeEEEEeCCCCCCchHHHHHHHHHHHHHhhhc-CceEEEEcC
Confidence 46899999999993 4466666632 22678899988865 321 234444443222 234444432
Q ss_pred C----------------------CCCHHHHHHHHHHhcC---CCEEEEEcCCCCCChhhHHHHHHHHH
Q 027065 140 R----------------------NHGKGEAIRKGMLHSR---GELLLMLDADGATKVTDLEKLESQIH 182 (229)
Q Consensus 140 ~----------------------~~gk~~a~n~gl~~a~---~d~v~~lD~D~~~~~~~l~~l~~~~~ 182 (229)
. +-||+.++-.|+..|+ .+||-|+|+|..++.. +.+-+..+.
T Consensus 119 Dp~la~Af~~aGyp~il~~~g~VR~GKgEGMiiG~lLAk~~g~~YVGFiDADNyiPGa-V~EYvk~yA 185 (393)
T PRK14503 119 DPGLAEALKEAGYPYILDENGLVRSGKGEGMIIGLLLAKALGARYVGFVDADNYIPGA-VNEYVKIYA 185 (393)
T ss_pred CHHHHHHHHHcCChhhhCCCCceecCcchHHHHHHHHHHHhCCCeEeEeecccCCCch-HHHHHHHHH
Confidence 1 2589999999987774 5999999999998654 444444444
No 75
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=97.50 E-value=0.0019 Score=58.00 Aligned_cols=116 Identities=16% Similarity=0.177 Sum_probs=85.4
Q ss_pred CCCceEEEEEeecCC-CCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCC-Ccc-----hHHHHHHHHHHcCCCcEEE
Q 027065 63 PAEKYISLIIPAFNE-EHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGS-SDG-----TKRVAFDFVRKYTVDNVRI 135 (229)
Q Consensus 63 ~~~p~vsviip~~ne-~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s-~d~-----t~~~~~~~~~~~~~~~i~v 135 (229)
.+...|.||||..+. .+.+.+-|+...+ .+. ++..+..++||..++ .|. ..+.++++..+++..++.+
T Consensus 244 ~~~~~V~iIvPl~~r~~~~~~~Fl~~~~~----~~l-~~~~~~~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~ 318 (499)
T PF05679_consen 244 TESTRVHIIVPLSGREADWFRRFLENFEK----VCL-ETDDNVFLTVVLFYDPSDSDSISQIKELLEELERKYPFSRIKW 318 (499)
T ss_pred cCCCEEEEEEEecCccHHHHHHHHHHHHH----Hhc-ccCCceEEEEEEecCcccchhHHHHHHHHHHHHHhCCccceEE
Confidence 344789999999999 5555555555433 333 245567777776655 222 2357788888888778999
Q ss_pred EEcC-CCCCHHHHHHHHHHhcC-CCEEEEEcCCCCCChhhHHHHHHHHHH
Q 027065 136 ILLG-RNHGKGEAIRKGMLHSR-GELLLMLDADGATKVTDLEKLESQIHA 183 (229)
Q Consensus 136 i~~~-~~~gk~~a~n~gl~~a~-~d~v~~lD~D~~~~~~~l~~l~~~~~~ 183 (229)
+... +....+.++..|++... .++++|+|.|..+++++|.+.-..-..
T Consensus 319 i~~~~~~fsr~~~Ld~g~~~~~~d~L~f~~Dvd~~f~~~fL~rcR~nti~ 368 (499)
T PF05679_consen 319 ISVKTGEFSRGAALDVGAKKFPPDSLLFFCDVDMVFTSDFLNRCRMNTIP 368 (499)
T ss_pred EEecCCCccHHHHHHhhcccCCCCcEEEEEeCCcccCHHHHHHHHHhhhc
Confidence 9987 78889999999998664 578899999999999999988664433
No 76
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=97.45 E-value=0.0016 Score=52.67 Aligned_cols=111 Identities=18% Similarity=0.156 Sum_probs=70.2
Q ss_pred ceEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCC--C-
Q 027065 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRN--H- 142 (229)
Q Consensus 66 p~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~--~- 142 (229)
+..+++||.--.+ ..+.|-.+++..+.....=++....++|++++.+.-. ..++.+....+ ++.++..... .
T Consensus 2 ~~~~~iiPv~~S~-e~p~~~~R~f~~~~~~k~fts~~~~~vi~~~~~~~~d--~~i~~~i~~~~--~~~yl~~~s~~~F~ 76 (346)
T COG4092 2 QPNGEIIPVAESE-ELPLTDSRQFSRTSAVKVFTSSDITMVICLRAHEVMD--RLIRSYIDPMP--RVLYLDFGSPEPFA 76 (346)
T ss_pred CCcceEeecchhh-ccchhHHHHHhhHhhhhhccccccEEEEEEecchhHH--HHHHHHhcccc--ceEEEecCCCcccc
Confidence 4588899986433 2233444444422211112577789999998877332 44555655555 6666654322 1
Q ss_pred CHHHHHHHHHHhcC----CCEEEEEcCCCCCChhhHHHHHHHH
Q 027065 143 GKGEAIRKGMLHSR----GELLLMLDADGATKVTDLEKLESQI 181 (229)
Q Consensus 143 gk~~a~n~gl~~a~----~d~v~~lD~D~~~~~~~l~~l~~~~ 181 (229)
..+.-.|.|..++. +++|+|+|.|+..+.+-+.+++.-+
T Consensus 77 s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~dnF~k~l~~~ 119 (346)
T COG4092 77 SETICANNGADYSHEKCESNLVLFLDVDCFGSSDNFAKMLSIA 119 (346)
T ss_pred chhhhhhccchhhhccccccEEEEEeccccccHHHHHHHHHHH
Confidence 23556677777765 8999999999999988888887544
No 77
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=97.36 E-value=0.0026 Score=52.12 Aligned_cols=110 Identities=17% Similarity=0.150 Sum_probs=73.5
Q ss_pred CCCCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCC--cchHHHHHHHHHHcC--------CC
Q 027065 62 DPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSS--DGTKRVAFDFVRKYT--------VD 131 (229)
Q Consensus 62 ~~~~p~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~--d~t~~~~~~~~~~~~--------~~ 131 (229)
....++|-|+.|..|.+.++.+-++.+.+. ++|...+.+=++...++ |.|.+.+++..++.. ..
T Consensus 21 ~~~~e~VLILtplrna~~~l~~y~~~L~~L------~YP~~lIsLgfLv~d~~e~d~t~~~l~~~~~~~q~~~~~~~~F~ 94 (269)
T PF03452_consen 21 ARNKESVLILTPLRNAASFLPDYFDNLLSL------TYPHELISLGFLVSDSSEFDNTLKILEAALKKLQSHGPESKRFR 94 (269)
T ss_pred cccCCeEEEEEecCCchHHHHHHHHHHHhC------CCCchheEEEEEcCCCchhHHHHHHHHHHHHHHhccCcccCCcc
Confidence 345678999999999999988888888873 24455677755555566 888888876554421 23
Q ss_pred cEEEEEcCCC--------------------CCHHHHHHHHHHhc---CCCEEEEEcCCCCCChh-hHHHH
Q 027065 132 NVRIILLGRN--------------------HGKGEAIRKGMLHS---RGELLLMLDADGATKVT-DLEKL 177 (229)
Q Consensus 132 ~i~vi~~~~~--------------------~gk~~a~n~gl~~a---~~d~v~~lD~D~~~~~~-~l~~l 177 (229)
.++++..+-. .-.+.|+|..+..+ ..+||+++|+|..-.|. .++.|
T Consensus 95 ~itIl~~df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN~LL~~aL~p~~swVlWlDaDIv~~P~~lI~dl 164 (269)
T PF03452_consen 95 SITILRKDFGQQLSQDRSERHAFEVQRPRRRAMARARNFLLSSALGPWHSWVLWLDADIVETPPTLIQDL 164 (269)
T ss_pred eEEEEcCCCcccccCchhhccchhhHHHHHHHHHHHHHHHHHhhcCCcccEEEEEecCcccCChHHHHHH
Confidence 6777665321 01345667666655 35999999999997554 34444
No 78
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=97.09 E-value=0.0027 Score=58.35 Aligned_cols=105 Identities=16% Similarity=0.285 Sum_probs=67.7
Q ss_pred ceEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCC---cc---hHHHHHHHHHHcCCCcEEEEEcC
Q 027065 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSS---DG---TKRVAFDFVRKYTVDNVRIILLG 139 (229)
Q Consensus 66 p~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~---d~---t~~~~~~~~~~~~~~~i~vi~~~ 139 (229)
....||||+.||.- ..|+-++..+ +.++-||||.|++. |. -.+.++.+..--. ..+-+++..
T Consensus 55 ~~~aivvp~k~e~~---~~~~gvl~~i--------p~~c~ii~vsns~r~~~d~~~~e~~~~~~~~~~~~-~~~~~vhq~ 122 (694)
T PRK14502 55 KKMAIVLPIKDEDL---KVFEGVLSGI--------PHDCLMIVISNSSKQEVDNFKNEKDIVNRFCRITH-RQAIVVHQK 122 (694)
T ss_pred hCcEEEEEcCCCch---hHHhhHhhcC--------CCCCeEEEEeCCCCCchHHHHHHHHHHHHHHHhhc-CceEEEEcC
Confidence 36899999999993 4466666632 22678899988875 32 1234444443222 234444431
Q ss_pred C----------------------CCCHHHHHHHHHHhcC---CCEEEEEcCCCCCChhhHHHHHHHHHH
Q 027065 140 R----------------------NHGKGEAIRKGMLHSR---GELLLMLDADGATKVTDLEKLESQIHA 183 (229)
Q Consensus 140 ~----------------------~~gk~~a~n~gl~~a~---~d~v~~lD~D~~~~~~~l~~l~~~~~~ 183 (229)
. +-||+.++-.|+..|+ .+||-|+|+|.+++....+. +..+..
T Consensus 123 dp~~a~a~~~~g~~~~~~~~~~vr~gk~egm~~g~~la~~~g~~yvgfidadny~pg~v~ey-~~~yaa 190 (694)
T PRK14502 123 NPELANAIADAGYPELLGEDGLIRSGKAEGMILGIILTMFSGRDYVGFIDTDNYIPGAVWEY-AKHFAT 190 (694)
T ss_pred CHHHHHHHHHcCChhhhCCCCceecCcchHHHHHHHHHHhcCCceEeEeeccCCCCchHHHH-HHHHHh
Confidence 1 2589999999998774 59999999999986554444 444433
No 79
>PLN02458 transferase, transferring glycosyl groups
Probab=96.89 E-value=0.018 Score=48.25 Aligned_cols=105 Identities=8% Similarity=0.106 Sum_probs=64.4
Q ss_pred CCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCC-cchHHHHHHHHHHcCCCcEEEEEcCCCC
Q 027065 64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSS-DGTKRVAFDFVRKYTVDNVRIILLGRNH 142 (229)
Q Consensus 64 ~~p~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~-d~t~~~~~~~~~~~~~~~i~vi~~~~~~ 142 (229)
+.+.|-||.|+|.....-..-|..+.+.+. .-.+++..|||+|+.. ..+.+++++. .- ..+.+..+++.
T Consensus 110 ~~rlIivVTPTY~rR~~Q~a~LTRLahTL~-----lVp~pL~WIVVEd~~~t~~va~lLrrs----Gl-~y~HL~~k~~~ 179 (346)
T PLN02458 110 PRRLVIIVTPISTKDRYQGVLLRRLANTLR-----LVPPPLLWIVVEGQSDSEEVSEMLRKT----GI-MYRHLVFKENF 179 (346)
T ss_pred CCceEEEECCCCCCcchhHHHHHHHHHHHh-----cCCCCceEEEEeCCCCCHHHHHHHHHc----CC-ceEEeccCCCC
Confidence 346799999999842222233455555443 2345799999998762 2244444433 31 12222222232
Q ss_pred -----CHHHHHHHHHHhcC----CCEEEEEcCCCCCChhhHHHHH
Q 027065 143 -----GKGEAIRKGMLHSR----GELLLMLDADGATKVTDLEKLE 178 (229)
Q Consensus 143 -----gk~~a~n~gl~~a~----~d~v~~lD~D~~~~~~~l~~l~ 178 (229)
.....+|.|++..+ .-+|.|.|+|..++-+.+++|-
T Consensus 180 ~~~~~r~~~QRN~AL~~IR~h~l~GVVyFADDdNtYsl~LFeEmR 224 (346)
T PLN02458 180 TDPEAELDHQRNLALRHIEHHKLSGIVHFAGLSNVYDLDFFDEIR 224 (346)
T ss_pred CCccchhHHHHHHHHHHHHhcCcCceEEEccCCCcccHHHHHHHh
Confidence 12466999998764 4799999999999988887743
No 80
>PLN02893 Cellulose synthase-like protein
Probab=96.83 E-value=0.0058 Score=56.69 Aligned_cols=52 Identities=15% Similarity=0.126 Sum_probs=45.5
Q ss_pred cEEEEEcCCC-----CCHHHHHHHHHHh----cCCCEEEEEcCCCCC-ChhhHHHHHHHHHH
Q 027065 132 NVRIILLGRN-----HGKGEAIRKGMLH----SRGELLLMLDADGAT-KVTDLEKLESQIHA 183 (229)
Q Consensus 132 ~i~vi~~~~~-----~gk~~a~n~gl~~----a~~d~v~~lD~D~~~-~~~~l~~l~~~~~~ 183 (229)
++.++.++++ .-|++|+|.+++. ++|++|+.+|+|..+ +|+.+.+.+-.|.+
T Consensus 265 ~lvYvsReKrp~~~Hh~KAGaLN~llrvS~~~TngpfIl~lDcD~y~n~p~~l~~amcff~D 326 (734)
T PLN02893 265 NLIYVSREKSKNSPHHFKAGALNTLLRVSATMTNAPIILTLDCDMYSNDPQTPLRALCYLLD 326 (734)
T ss_pred ceEEEeCCCCCCCCcccccchHHHHHHhhcccCCCCEEEEecCCcCCCchhHHHHHHHHhcC
Confidence 8888888865 4499999999996 689999999999996 68999999988865
No 81
>KOG1476 consensus Beta-1,3-glucuronyltransferase B3GAT1/SQV-8 [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.063 Score=44.68 Aligned_cols=107 Identities=13% Similarity=0.175 Sum_probs=68.6
Q ss_pred CceEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCC--CcchHHHHHHHHHHcCCCcEEEEEcCCCC
Q 027065 65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGS--SDGTKRVAFDFVRKYTVDNVRIILLGRNH 142 (229)
Q Consensus 65 ~p~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s--~d~t~~~~~~~~~~~~~~~i~vi~~~~~~ 142 (229)
.|.|-||.|+|+..... .-|..+.+.+.. - +++..|||+||+ +..+..++++- .-+..++. .+...
T Consensus 86 ~~~iivVTPTY~R~~q~-~~LtRlanTL~~-----V-~nLhWIVVEd~~~~~p~v~~~L~rt----gl~ythl~-~~t~~ 153 (330)
T KOG1476|consen 86 LPTIIVVTPTYVRPVQA-AELTRLANTLRL-----V-PNLHWIVVEDGEGTTPEVSGILRRT----GLPYTHLV-HKTPM 153 (330)
T ss_pred CccEEEEcccccchhHH-HHHHHHHHHHhh-----c-CCeeEEEEecCCCCCHHHHHHHHHc----CCceEEEe-ccCCC
Confidence 67899999999988332 234555554442 2 389999999995 33444555443 21123333 33333
Q ss_pred C-H----HHHHHHHHHhcC---------CCEEEEEcCCCCCChhhHHHHHHHHHHh
Q 027065 143 G-K----GEAIRKGMLHSR---------GELLLMLDADGATKVTDLEKLESQIHAV 184 (229)
Q Consensus 143 g-k----~~a~n~gl~~a~---------~d~v~~lD~D~~~~~~~l~~l~~~~~~~ 184 (229)
+ + -..+|.|++..+ .-+|.|-|+|...+-+.+++ ++.....
T Consensus 154 ~~~~~rg~~qRn~aL~~ir~~~~~~~~~~GVVyFADDdN~YdleLF~e-iR~v~~~ 208 (330)
T KOG1476|consen 154 GYKARRGWEQRNMALRWIRSRILRHHKLEGVVYFADDDNTYDLELFEE-IRNVKKF 208 (330)
T ss_pred CCccccchhHHHHHHHHHHHhcccccccceEEEEccCCcchhHHHHHH-Hhcccee
Confidence 3 2 467899987654 36899999999999888887 4444443
No 82
>PF11735 CAP59_mtransfer: Cryptococcal mannosyltransferase 1 ; InterPro: IPR021047 The capsule of pathogenic fungi is a complex polysaccharide whose formation is determined by a number of enzymes including, most importantly, alpha-1,3-mannosyltransferase 1 [, ]. It is responsible for addition of mannose residues in an alpha-1,3 linkage to a polymannosly precursor.
Probab=96.57 E-value=0.11 Score=42.07 Aligned_cols=110 Identities=21% Similarity=0.157 Sum_probs=74.5
Q ss_pred EEEEEeecCCCCChHHHHH-HHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCc--EEEEEcCCCCC-
Q 027065 68 ISLIIPAFNEEHRLPGALD-ETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDN--VRIILLGRNHG- 143 (229)
Q Consensus 68 vsviip~~ne~~~l~~~l~-sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~--i~vi~~~~~~g- 143 (229)
+-|..-.||.++.+..... ++++.+... ...+.=|-|+++||.|.|.+.++.+.......+ -++...+....
T Consensus 2 ~fIA~~l~~~~~iL~~~~~~~ll~li~~L----Gp~nv~vSIyE~~S~D~T~~~L~~L~~~L~~lgv~~~i~~~~~~~~~ 77 (241)
T PF11735_consen 2 YFIAANLYNNEDILPSLWGDALLELIRFL----GPENVFVSIYESGSWDGTKEALRALDAELDALGVPHSIVLSDITHRD 77 (241)
T ss_pred EEEEEEcccCHhHHHHHHHHHHHHHHHHh----CcCeEEEEEEeCCCCccHHHHHHHHHHHHHhCCCCeEEEeCCCcccc
Confidence 3445566888888887777 777777664 345788889999999999999998874443111 22223221111
Q ss_pred -------------HHHHHHHHHHhc---------CCCEEEEEcCCCCCChhhHHHHHHHHH
Q 027065 144 -------------KGEAIRKGMLHS---------RGELLLMLDADGATKVTDLEKLESQIH 182 (229)
Q Consensus 144 -------------k~~a~n~gl~~a---------~~d~v~~lD~D~~~~~~~l~~l~~~~~ 182 (229)
.+.-+|.|++-. +.+-|+|++ |....+..+-+++..-+
T Consensus 78 ~~~~~~~~~RI~~LA~lRN~ALePL~~~~~~~~~~fd~VlfLN-DV~f~~~Dil~LL~~~~ 137 (241)
T PF11735_consen 78 EIERPPRLRRIEYLAELRNRALEPLYDLARKRGRRFDKVLFLN-DVFFCPEDILELLFTRN 137 (241)
T ss_pred cccccchhhhHHHHHHHHhHHHHHHHhhhhccCCCcCEEEEec-CcccCHHHHHHHHhhcC
Confidence 246788888632 237899998 77888887777777655
No 83
>PF03214 RGP: Reversibly glycosylated polypeptide; InterPro: IPR004901 Alpha-1,4-glucan-protein synthase catalyses the reaction: protein + UDP-D-glucose = alpha-D-glucosyl-protein + UDP The enzyme has a possible role in the synthesis of cell wall polysaccharides in plants []. It is found associated with the cell wall, with the highest concentrations in the plasmodesmata. It is also located in the Golgi apparatus.; GO: 0008466 glycogenin glucosyltransferase activity, 0016758 transferase activity, transferring hexosyl groups, 0007047 cellular cell wall organization, 0030244 cellulose biosynthetic process, 0005618 cell wall, 0030054 cell junction
Probab=96.52 E-value=0.0026 Score=53.10 Aligned_cols=111 Identities=18% Similarity=0.258 Sum_probs=66.7
Q ss_pred eEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHH-cCC-CcEEEEEcCCC--C
Q 027065 67 YISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK-YTV-DNVRIILLGRN--H 142 (229)
Q Consensus 67 ~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~-~~~-~~i~vi~~~~~--~ 142 (229)
.+.||||+-+.. +-..|+....-. .++++|||-|+...+...+-+-+-.+ |.. +-.+++-.+.- .
T Consensus 9 ~~divi~~~~~~--l~~~~~~wr~~~---------~~~hliiv~d~~~~~~~~~p~g~~~~~y~~~di~~~lg~~~~i~~ 77 (348)
T PF03214_consen 9 EVDIVIPALRPN--LTDFLEEWRPFF---------SPYHLIIVQDPDPNEEIKVPEGFDYEVYNRNDIERVLGAKTLIPF 77 (348)
T ss_pred cccEEeeccccc--HHHHHHHHHHhh---------cceeEEEEeCCCccccccCCcccceeeecHhhHHhhcCCcccccc
Confidence 499999997754 222233332211 27999999998766554443332100 000 00111111111 1
Q ss_pred CHHHHHHHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHhCCcc
Q 027065 143 GKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKE 188 (229)
Q Consensus 143 gk~~a~n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~ 188 (229)
...+.+|.|+-.++.+|++++|+|+.+..+.....++.+..+....
T Consensus 78 ~~~a~R~fGyL~s~~~yivsiDDD~~P~~D~~g~~~~~v~qh~~~~ 123 (348)
T PF03214_consen 78 KGDACRNFGYLVSKKDYIVSIDDDCLPAKDDFGTHIDAVAQHVENL 123 (348)
T ss_pred cccchhhhHhhhcccceEEEEccccccccCCccceehhhhccceee
Confidence 1335688899999999999999999999888877777776655433
No 84
>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).
Probab=96.46 E-value=0.073 Score=42.44 Aligned_cols=99 Identities=11% Similarity=0.115 Sum_probs=63.5
Q ss_pred ceEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCC--CcchHHHHHHHHHHcCCCcEEEEEc--CCC
Q 027065 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGS--SDGTKRVAFDFVRKYTVDNVRIILL--GRN 141 (229)
Q Consensus 66 p~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s--~d~t~~~~~~~~~~~~~~~i~vi~~--~~~ 141 (229)
|.+-+|.|+|.......+ |..+.+.+.- - +++..|||+|+. ++.+.+++++. ++.+.+. +.+
T Consensus 1 p~i~vVTPTy~R~~Q~~~-LtRLa~TL~l-----V-p~l~WIVVEd~~~~t~~va~lL~~s-------gl~y~HL~~~~~ 66 (223)
T cd00218 1 PTIYVVTPTYARPVQKAE-LTRLAHTLRL-----V-PPLHWIVVEDSEEKTPLVAELLRRS-------GLMYTHLNAKTP 66 (223)
T ss_pred CeEEEECCCCccchhhHH-HHHHHHHHhc-----C-CceEEEEEeCCCCCCHHHHHHHHHc-------CCceEEeccCCC
Confidence 458899999988744332 4444444432 2 289999999987 34455555554 2333322 211
Q ss_pred -------CCHHHHHHHHHHhcC-------CCEEEEEcCCCCCChhhHHHHH
Q 027065 142 -------HGKGEAIRKGMLHSR-------GELLLMLDADGATKVTDLEKLE 178 (229)
Q Consensus 142 -------~gk~~a~n~gl~~a~-------~d~v~~lD~D~~~~~~~l~~l~ 178 (229)
.-....+|.|++..+ .-+|.|.|+|...+-+.+++|-
T Consensus 67 ~~~~~~~~rg~~qRn~AL~~ir~~~~~~~~GVVyFADDdN~Ysl~lF~emR 117 (223)
T cd00218 67 SDPTWLKPRGVEQRNLALRWIREHLSAKLDGVVYFADDDNTYDLELFEEMR 117 (223)
T ss_pred CCcccCCcccHHHHHHHHHHHHhccccCcceEEEEccCCCcccHHHHHHHh
Confidence 113467899997652 3689999999999988888743
No 85
>PF13733 Glyco_transf_7N: N-terminal region of glycosyl transferase group 7; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=96.38 E-value=0.013 Score=42.91 Aligned_cols=78 Identities=19% Similarity=0.359 Sum_probs=52.6
Q ss_pred CceEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCH
Q 027065 65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGK 144 (229)
Q Consensus 65 ~p~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk 144 (229)
.-++.||||.+|.++.+...|..+..-+.+|. ..+.|+||+...+ ....+
T Consensus 46 ~~kvAiIIPyRdR~~hL~~fl~~l~~~L~rQ~-----~~y~I~vieQ~~~-------------------------~~FNR 95 (136)
T PF13733_consen 46 RHKVAIIIPYRDREEHLRIFLPHLHPFLQRQQ-----LDYRIFVIEQVDN-------------------------GPFNR 95 (136)
T ss_dssp S-EEEEEEEESS-HHHHHHHHHHHHHHHHHTT------EEEEEEEEE-SS-------------------------S---H
T ss_pred ccceEEEEEeCCHHHHHHHHHHHHHHHHhhCc-----ceEEEEEEeeccC-------------------------CCCch
Confidence 34799999999999888888888888777642 3678888866322 13456
Q ss_pred HHHHHHHHHhc----CCCEEEEEcCCCCCChh
Q 027065 145 GEAIRKGMLHS----RGELLLMLDADGATKVT 172 (229)
Q Consensus 145 ~~a~n~gl~~a----~~d~v~~lD~D~~~~~~ 172 (229)
+.-+|.|+..| ..|.++|=|.|..+..+
T Consensus 96 g~L~NvGf~eA~~~~~~dc~ifHDVDllP~~~ 127 (136)
T PF13733_consen 96 GKLMNVGFLEALKDDDFDCFIFHDVDLLPEND 127 (136)
T ss_dssp HHHHHHHHHHHHHHS--SEEEEE-TTEEESBT
T ss_pred hhhhhHHHHHHhhccCCCEEEEecccccccCC
Confidence 67788887766 35899999999876543
No 86
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=96.35 E-value=0.044 Score=43.65 Aligned_cols=97 Identities=16% Similarity=0.197 Sum_probs=65.4
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 027065 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (229)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n~ 150 (229)
++|.-+. .-+..+++++.+ ..-.+++++-.... +.++++...+ +++++..+...|.+.++..
T Consensus 20 l~~v~gk-pli~~~i~~l~~----------~~i~~i~iv~~~~~----~~i~~~~~~~---~~~~~~~~~~~g~~~ai~~ 81 (229)
T cd02540 20 LHPLAGK-PMLEHVLDAARA----------LGPDRIVVVVGHGA----EQVKKALANP---NVEFVLQEEQLGTGHAVKQ 81 (229)
T ss_pred cceeCCc-cHHHHHHHHHHh----------CCCCeEEEEECCCH----HHHHHHhCCC---CcEEEECCCCCCCHHHHHH
Confidence 4455443 667777777766 12346666654222 2333333332 4677777767888999999
Q ss_pred HHHhcC--CCEEEEEcCCC-CCChhhHHHHHHHHHHhC
Q 027065 151 GMLHSR--GELLLMLDADG-ATKVTDLEKLESQIHAVG 185 (229)
Q Consensus 151 gl~~a~--~d~v~~lD~D~-~~~~~~l~~l~~~~~~~~ 185 (229)
|+.... .+.++++++|. .+.+..+.++++.+.+.+
T Consensus 82 a~~~~~~~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~ 119 (229)
T cd02540 82 ALPALKDFEGDVLVLYGDVPLITPETLQRLLEAHREAG 119 (229)
T ss_pred HHHhhccCCCeEEEEeCCccccCHHHHHHHHHHHHhcC
Confidence 998775 68999999999 568899999998886643
No 87
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=96.19 E-value=0.065 Score=40.17 Aligned_cols=97 Identities=10% Similarity=0.179 Sum_probs=66.7
Q ss_pred EeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcC-CCCCHHHHHHH
Q 027065 72 IPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG-RNHGKGEAIRK 150 (229)
Q Consensus 72 ip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~-~~~gk~~a~n~ 150 (229)
++. +...-++.+++.+.+. ..-+|+|+-.. ++..+.+ ... +++++.++ ...|...++-.
T Consensus 19 ~~i-~g~~li~~~l~~l~~~----------~~~~Ivvv~~~--~~~~~~~----~~~---~~~~v~~~~~~~G~~~sl~~ 78 (160)
T PF12804_consen 19 LPI-GGKPLIERVLEALREA----------GVDDIVVVTGE--EEIYEYL----ERY---GIKVVVDPEPGQGPLASLLA 78 (160)
T ss_dssp SEE-TTEEHHHHHHHHHHHH----------TESEEEEEEST--HHHHHHH----TTT---TSEEEE-STSSCSHHHHHHH
T ss_pred eeE-CCccHHHHHHHHhhcc----------CCceEEEecCh--HHHHHHH----hcc---CceEEEeccccCChHHHHHH
Confidence 444 5556666666666552 12477777664 2222222 222 57777775 46899999999
Q ss_pred HHHhc-CCCEEEEEcCCCC-CChhhHHHHHHHHHHhCCcc
Q 027065 151 GMLHS-RGELLLMLDADGA-TKVTDLEKLESQIHAVGRKE 188 (229)
Q Consensus 151 gl~~a-~~d~v~~lD~D~~-~~~~~l~~l~~~~~~~~~~~ 188 (229)
|+... ..+.++++.+|.. ++++.+.++++.+++.+...
T Consensus 79 a~~~~~~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i 118 (160)
T PF12804_consen 79 ALSQLPSSEPVLVLPCDQPFLSPELLRRLLEALEKSPADI 118 (160)
T ss_dssp HHHTSTTSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSE
T ss_pred HHHhcccCCCcEEEeCCccccCHHHHHHHHHHHhccCCcE
Confidence 99998 8999999999995 59999999999998755433
No 88
>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.
Probab=96.11 E-value=0.022 Score=45.44 Aligned_cols=79 Identities=16% Similarity=0.263 Sum_probs=58.8
Q ss_pred eEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHH
Q 027065 67 YISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGE 146 (229)
Q Consensus 67 ~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~ 146 (229)
+++||||.+|.++.+...+..+..-+..|. -++.|+|++.-. .....++.
T Consensus 3 ~~aiivpyr~R~~~l~~~l~~~~~~L~rq~-----~~~~i~vi~Q~~-------------------------~~~FNR~~ 52 (219)
T cd00899 3 KVAIIVPFRNRFEHLLIFLPHLHPFLQRQQ-----LDYRIFVIEQVG-------------------------NFRFNRAK 52 (219)
T ss_pred ceEEEEecCCHHHHHHHHHHHHHHHHHhcC-----CcEEEEEEEecC-------------------------Cccchhhh
Confidence 599999999999888888888888777642 356666665311 12355677
Q ss_pred HHHHHHHhc----CCCEEEEEcCCCCCChhhHH
Q 027065 147 AIRKGMLHS----RGELLLMLDADGATKVTDLE 175 (229)
Q Consensus 147 a~n~gl~~a----~~d~v~~lD~D~~~~~~~l~ 175 (229)
.+|.|+..| ..++++|-|.|-.+..+...
T Consensus 53 llNvG~~~a~k~~~~dc~i~hDVDllP~~~~~~ 85 (219)
T cd00899 53 LLNVGFLEALKDGDWDCFIFHDVDLLPENDRNL 85 (219)
T ss_pred hhhHHHHHHhhcCCccEEEEecccccccCcccc
Confidence 888877766 35899999999999888744
No 89
>KOG2571 consensus Chitin synthase/hyaluronan synthase (glycosyltransferases) [Cell wall/membrane/envelope biogenesis]
Probab=96.02 E-value=0.079 Score=50.04 Aligned_cols=56 Identities=13% Similarity=0.086 Sum_probs=42.4
Q ss_pred HHHHHHHHhcCC--CEEEEEcCCCCCChhhHHHHHHHHHHhCCcceeeccceeecCcc
Q 027065 146 EAIRKGMLHSRG--ELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTF 201 (229)
Q Consensus 146 ~a~n~gl~~a~~--d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 201 (229)
..++........ ++|+++|+|+.+.|+.+.+|++.|+.++..+...|......+.+
T Consensus 428 ~~~y~~~~~L~~~v~~il~vD~dT~~~P~ai~~lv~~f~~dp~VggaCG~I~~~~~~w 485 (862)
T KOG2571|consen 428 WVMYTAFKALMPSVDYILVVDADTRLDPDALYHLVKVFDEDPQVGGACGRILNKGGSW 485 (862)
T ss_pred HHHHHHHHHhcCcceEEEEecCCCccCcHHHHHHHHHhccCcccceeccccccCCCce
Confidence 444555555543 68899999999999999999999999998888777444444433
No 90
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=95.92 E-value=0.091 Score=40.19 Aligned_cols=94 Identities=19% Similarity=0.218 Sum_probs=60.1
Q ss_pred CCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcC-CCCCHHHHHHHHHHh
Q 027065 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG-RNHGKGEAIRKGMLH 154 (229)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~-~~~gk~~a~n~gl~~ 154 (229)
+....++.+++.+... ..-+|+|+-+..... . .+....+ .+.++..+ ...|...++..|++.
T Consensus 24 ~g~~li~~~i~~l~~~----------~~~~i~vv~~~~~~~---~-~~~~~~~---~~~~~~~~~~~~G~~~~i~~al~~ 86 (186)
T cd04182 24 DGKPLLRHALDAALAA----------GLSRVIVVLGAEADA---V-RAALAGL---PVVVVINPDWEEGMSSSLAAGLEA 86 (186)
T ss_pred CCeeHHHHHHHHHHhC----------CCCcEEEECCCcHHH---H-HHHhcCC---CeEEEeCCChhhCHHHHHHHHHHh
Confidence 3445666666666551 123677765432221 1 1222222 35555544 346888999999998
Q ss_pred cC--CCEEEEEcCCC-CCChhhHHHHHHHHHHhCC
Q 027065 155 SR--GELLLMLDADG-ATKVTDLEKLESQIHAVGR 186 (229)
Q Consensus 155 a~--~d~v~~lD~D~-~~~~~~l~~l~~~~~~~~~ 186 (229)
+. .|+++++.+|. .++++.+.++++.+.+.+.
T Consensus 87 ~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~ 121 (186)
T cd04182 87 LPADADAVLILLADQPLVTAETLRALIDAFREDGA 121 (186)
T ss_pred ccccCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCC
Confidence 86 79999999999 5689999999998875443
No 91
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=95.84 E-value=0.26 Score=38.17 Aligned_cols=98 Identities=11% Similarity=0.114 Sum_probs=61.6
Q ss_pred CCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC-CCCHHHHHHHHHHh
Q 027065 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR-NHGKGEAIRKGMLH 154 (229)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~-~~gk~~a~n~gl~~ 154 (229)
+....++.+++.+.. ...-+++||.... ++..+.+.+...... .+.++.++. ..|...++..|++.
T Consensus 24 ~g~~ll~~~i~~~~~----------~~~~~i~vv~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~G~~~si~~gl~~ 90 (190)
T TIGR03202 24 GETTLGSASLKTALS----------SRLSKVIVVIGEK-YAHLSWLDPYLLADE--RIMLVCCRDACEGQAHSLKCGLRK 90 (190)
T ss_pred CCccHHHHHHHHHHh----------CCCCcEEEEeCCc-cchhhhhhHhhhcCC--CeEEEECCChhhhHHHHHHHHHHH
Confidence 445566666665544 1134777776543 322222222211112 456555443 45788899999987
Q ss_pred c---CCCEEEEEcCCCCC-ChhhHHHHHHHHHHhCC
Q 027065 155 S---RGELLLMLDADGAT-KVTDLEKLESQIHAVGR 186 (229)
Q Consensus 155 a---~~d~v~~lD~D~~~-~~~~l~~l~~~~~~~~~ 186 (229)
+ ..|+++++++|..+ +++.+.++++.+.+.+.
T Consensus 91 ~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~ 126 (190)
T TIGR03202 91 AEAMGADAVVILLADQPFLTADVINALLALAKRRPD 126 (190)
T ss_pred hccCCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCCC
Confidence 6 46999999999986 88899999998866544
No 92
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=95.81 E-value=0.35 Score=40.56 Aligned_cols=117 Identities=18% Similarity=0.213 Sum_probs=71.4
Q ss_pred CceEEEEEeecCC--CCChHHHHHHHHHHHHHhhhhcCCCceEEEE-EECCCCcchHHHHHHHHHHcC----CCcEEEEE
Q 027065 65 EKYISLIIPAFNE--EHRLPGALDETLNYLQQRAAKDKSFTYEVLI-IDDGSSDGTKRVAFDFVRKYT----VDNVRIIL 137 (229)
Q Consensus 65 ~p~vsviip~~ne--~~~l~~~l~sl~~~~~~~~~~~~~~~~eiiv-vdd~s~d~t~~~~~~~~~~~~----~~~i~vi~ 137 (229)
.++++|=||+=.+ +.++..+|.|++..+.+. .....-|+| +.|...+....+.+++..+++ .+.+.|+.
T Consensus 51 ~~~L~IGIpTV~R~~~sYL~~TL~SLl~~ls~~----Er~~i~IvVllAd~Dp~~~~~~~~~i~~~f~~~i~sG~l~VI~ 126 (297)
T PF04666_consen 51 GKKLCIGIPTVKREKESYLLDTLASLLDGLSPE----ERKDIVIVVLLADTDPDYHPSVAQNISTRFADHIESGLLEVIS 126 (297)
T ss_pred CCeEEEEecccccCCCchHHHHHHHHHHhCCHH----HhcCeEEEEEecCCChhhhHHHHHHHHHHhHHHHHhCceEEEe
Confidence 3459999998554 479999999999977652 122333333 334333334455555554433 23455555
Q ss_pred cCCC-----------CCHH---------HHHH--HHHHhc--CCCEEEEEcCCCCCChhhHHHHHHHHHHhC
Q 027065 138 LGRN-----------HGKG---------EAIR--KGMLHS--RGELLLMLDADGATKVTDLEKLESQIHAVG 185 (229)
Q Consensus 138 ~~~~-----------~gk~---------~a~n--~gl~~a--~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~ 185 (229)
.+.. .|-. ..+. ..|.+| .|+|.+.+.+|....++|+..+.+.+....
T Consensus 127 ~p~~~Yp~l~~l~~~~~d~~~rv~wrsKq~lDya~Lm~y~~~~~~YyL~LEDDVia~~~f~~~i~~~v~~~~ 198 (297)
T PF04666_consen 127 PPPSYYPDLDNLKRNFGDSEERVRWRSKQNLDYAFLMNYCQNLGDYYLQLEDDVIAAPGFLSRIKRFVEAWE 198 (297)
T ss_pred cccccCCChhhhhhcccChhhhhhHHHhhcccHHHHHHHHHhcCCeEEEecCCeEechhHHHHHHHHHHHhc
Confidence 4422 1110 0111 122223 589999999999999999999999998765
No 93
>PLN02189 cellulose synthase
Probab=95.69 E-value=0.087 Score=50.64 Aligned_cols=52 Identities=13% Similarity=0.157 Sum_probs=43.3
Q ss_pred cEEEEEcCCCCC-----HHHHHHHHHH----hcCCCEEEEEcCCCCCC-hhhHHHHHHHHHH
Q 027065 132 NVRIILLGRNHG-----KGEAIRKGML----HSRGELLLMLDADGATK-VTDLEKLESQIHA 183 (229)
Q Consensus 132 ~i~vi~~~~~~g-----k~~a~n~gl~----~a~~d~v~~lD~D~~~~-~~~l~~l~~~~~~ 183 (229)
.+-++.++++.| |++|+|..++ .++++||+.+|+|.++. +..+.+.+=.|.+
T Consensus 499 ~LVYVSREKrPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmY~Nns~alr~AMCfflD 560 (1040)
T PLN02189 499 RLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMD 560 (1040)
T ss_pred eeEEEeccCCCCCCcccchhhHHHHHHHhhhccCCCeEEEccCccccCchHHHHHhhhhhcC
Confidence 688888776544 9999999995 45799999999999996 5888888888865
No 94
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=95.66 E-value=0.22 Score=38.23 Aligned_cols=95 Identities=16% Similarity=0.216 Sum_probs=61.4
Q ss_pred CCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC-CCCHHHHHHHHHH-
Q 027065 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR-NHGKGEAIRKGML- 153 (229)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~-~~gk~~a~n~gl~- 153 (229)
+....++..++.+.+. ..-+++|+-+...+ +..+.+...+ ++.++..+. ..|...++..|++
T Consensus 23 ~g~pll~~~i~~l~~~----------~~~~iivv~~~~~~---~~~~~~~~~~---~v~~v~~~~~~~g~~~si~~~l~~ 86 (188)
T TIGR03310 23 KGKTILEHVVDNALRL----------FFDEVILVLGHEAD---ELVALLANHS---NITLVHNPQYAEGQSSSIKLGLEL 86 (188)
T ss_pred CCeeHHHHHHHHHHHc----------CCCcEEEEeCCcHH---HHHHHhccCC---CeEEEECcChhcCHHHHHHHHhcC
Confidence 3455666666666651 13467666543322 2333332222 467766543 3588888999998
Q ss_pred hcCCCEEEEEcCCCC-CChhhHHHHHHHHHHhCC
Q 027065 154 HSRGELLLMLDADGA-TKVTDLEKLESQIHAVGR 186 (229)
Q Consensus 154 ~a~~d~v~~lD~D~~-~~~~~l~~l~~~~~~~~~ 186 (229)
....+.++++++|.. ++++.++++++.+.+.+.
T Consensus 87 ~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~ 120 (188)
T TIGR03310 87 PVQSDGYLFLLGDQPFVTPDIIQLLLEAFALKND 120 (188)
T ss_pred CCCCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCC
Confidence 456789999999995 689999999998876554
No 95
>PF01697 Glyco_transf_92: Glycosyltransferase family 92; InterPro: IPR008166 This entry represents a region approximately 300 residues long that is of unknown function. The aligned region contains several conserved cysteine residues and several charged residues that may be catalytic residues.
Probab=95.64 E-value=0.14 Score=42.35 Aligned_cols=109 Identities=20% Similarity=0.260 Sum_probs=72.8
Q ss_pred EEEEE-eecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcC-------
Q 027065 68 ISLII-PAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG------- 139 (229)
Q Consensus 68 vsvii-p~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~------- 139 (229)
++||+ |.|..+.... .+...+..-.-+ .--.+++-+.++++.+.++++.+.+. + .++++.-+
T Consensus 3 ~~vCv~pl~~~~~~~~-~l~e~ie~~~~~------G~~~~~~Y~~~~~~~~~~vL~~Y~~~-g--~v~~~~w~~~~~~~~ 72 (285)
T PF01697_consen 3 FVVCVSPLFGNEDDWL-QLIEWIEYHRLL------GVDHFYFYDNSSSPSVRKVLKEYERS-G--YVEVIPWPLRPKFPD 72 (285)
T ss_pred EEEEccchhcccccHH-HHHHHHHHHHHh------CCCEEEEEEccCCHHHHHhHHHHhhc-C--eEEEEEcccccccCC
Confidence 67777 5665442222 233333322221 24578888888999999999988776 2 57776654
Q ss_pred -------C-----CCCHHHHHHHHHHhcC--CCEEEEEcCCCCCChhh----HHHHHHHHHHhCC
Q 027065 140 -------R-----NHGKGEAIRKGMLHSR--GELLLMLDADGATKVTD----LEKLESQIHAVGR 186 (229)
Q Consensus 140 -------~-----~~gk~~a~n~gl~~a~--~d~v~~lD~D~~~~~~~----l~~l~~~~~~~~~ 186 (229)
. ..|-..+.|.++.+.+ .+|++|+|-|..+-|.. .+.+...+++.+.
T Consensus 73 ~~~~~~~~~~~~~~~~q~~a~~DCl~r~~~~~~~v~f~DiDE~lvP~~~~~~~~~~~~~l~~~~~ 137 (285)
T PF01697_consen 73 FPSPFPDPNSSVERRGQIAAYNDCLLRYRYRAKWVAFIDIDEFLVPTNAPTYPEEFEDLLREFPN 137 (285)
T ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHhhhhceEEEEeccccEEEeccccchhhHHHHHHhhccc
Confidence 0 1345678888887775 58999999999987666 6777777776654
No 96
>KOG3916 consensus UDP-Gal:glucosylceramide beta-1,4-galactosyltransferase [Carbohydrate transport and metabolism]
Probab=95.30 E-value=0.2 Score=42.23 Aligned_cols=75 Identities=20% Similarity=0.374 Sum_probs=56.4
Q ss_pred ceEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHH
Q 027065 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKG 145 (229)
Q Consensus 66 p~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~ 145 (229)
-+|.||||.+|.++.+...|..+...+.+|-+ .+.|+||+.-.++ ...++
T Consensus 151 ~kvAIIIPfR~Re~HL~~~l~~LhP~LqrQrL-----~y~iyVieQ~g~~-------------------------~FNRa 200 (372)
T KOG3916|consen 151 HKVAIIIPFRNREEHLRYLLHHLHPFLQRQRL-----DYRIYVIEQAGNK-------------------------PFNRA 200 (372)
T ss_pred ceeEEEeecccHHHHHHHHHHHhhHHHHhhhh-----ceeEEEEEecCCC-------------------------cccHH
Confidence 48999999999999999999999888877533 5777777653222 34556
Q ss_pred HHHHHHHHhc----CCCEEEEEcCCCCCC
Q 027065 146 EAIRKGMLHS----RGELLLMLDADGATK 170 (229)
Q Consensus 146 ~a~n~gl~~a----~~d~v~~lD~D~~~~ 170 (229)
.-+|.|+..| .-|-++|-|-|-.+.
T Consensus 201 kL~NVGf~eAlkd~~wdCfIFHDVDllPe 229 (372)
T KOG3916|consen 201 KLLNVGFLEALKDYGWDCFIFHDVDLLPE 229 (372)
T ss_pred HhhhhHHHHHHHhcCCCEEEEeccccccc
Confidence 6778887766 347888889887754
No 97
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=95.27 E-value=0.42 Score=37.09 Aligned_cols=53 Identities=17% Similarity=0.155 Sum_probs=41.6
Q ss_pred EEEEEcCC--CCCHHHHHHHHHHhcCCCEEEEEcCCCC-CChhhHHHHHHHHHHhC
Q 027065 133 VRIILLGR--NHGKGEAIRKGMLHSRGELLLMLDADGA-TKVTDLEKLESQIHAVG 185 (229)
Q Consensus 133 i~vi~~~~--~~gk~~a~n~gl~~a~~d~v~~lD~D~~-~~~~~l~~l~~~~~~~~ 185 (229)
++++.... ..|...++..|++....++++++++|.. ++++.+.++++.+.+.+
T Consensus 63 ~~~v~~~~~~~~g~~~~i~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~ 118 (193)
T PRK00317 63 LPVIPDSLADFPGPLAGILAGLKQARTEWVLVVPCDTPFIPPDLVARLAQAAGKDD 118 (193)
T ss_pred CcEEeCCCCCCCCCHHHHHHHHHhcCCCeEEEEcCCcCCCCHHHHHHHHHhhhcCC
Confidence 45555432 3677788999999888899999999995 59999999999876544
No 98
>KOG3588 consensus Chondroitin synthase 1 [Carbohydrate transport and metabolism]
Probab=95.25 E-value=0.19 Score=42.91 Aligned_cols=106 Identities=12% Similarity=0.116 Sum_probs=76.5
Q ss_pred CCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCC-CcchH--HHHHHHHHHcCCCcEEEEEcCC
Q 027065 64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGS-SDGTK--RVAFDFVRKYTVDNVRIILLGR 140 (229)
Q Consensus 64 ~~p~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s-~d~t~--~~~~~~~~~~~~~~i~vi~~~~ 140 (229)
..|.+.+++|...+..-+.....++.. ....+++++|+-=|+ .++-+ +....+..+++ ++.++....
T Consensus 227 ~~pgih~i~pl~gr~~~f~rf~q~~c~--------~~d~~l~l~vv~f~~se~e~ak~e~~tslra~f~--~~q~l~lng 296 (494)
T KOG3588|consen 227 EDPGIHMIMPLRGRAAIFARFAQSICA--------RGDDRLALSVVYFGYSEDEMAKRETITSLRASFI--PVQFLGLNG 296 (494)
T ss_pred cCCCceEEEeccchHHHhhhhhHHHhc--------cCCCceEEEEEEecCCChHHHhhhHHHHHhhcCC--ceEEecccc
Confidence 456799999999998766666664444 356678877765554 33322 34446667777 777777776
Q ss_pred CCCHHHHHHHHHHhcCCCE-EEEEcCCCCCChhhHHHHHH
Q 027065 141 NHGKGEAIRKGMLHSRGEL-LLMLDADGATKVTDLEKLES 179 (229)
Q Consensus 141 ~~gk~~a~n~gl~~a~~d~-v~~lD~D~~~~~~~l~~l~~ 179 (229)
....+.|+..|.+.-+.+. +.|+|.|..+..++|.+.-.
T Consensus 297 eFSRa~aL~vGAe~~~~nvLLFfcDVDi~FT~efL~rcr~ 336 (494)
T KOG3588|consen 297 EFSRAKALMVGAETLNANVLLFFCDVDIYFTTEFLNRCRL 336 (494)
T ss_pred hhhhhHHHHhhHHHhccceeEEEeccceeehHHHHHHHhh
Confidence 7888999999999886654 56689999999998887643
No 99
>KOG1413 consensus N-acetylglucosaminyltransferase I [Carbohydrate transport and metabolism]
Probab=95.11 E-value=0.099 Score=44.25 Aligned_cols=111 Identities=12% Similarity=0.173 Sum_probs=80.3
Q ss_pred CCCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEE-------
Q 027065 63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRI------- 135 (229)
Q Consensus 63 ~~~p~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~v------- 135 (229)
+.+|.+.|++-++|..+.++++++.++++- -....+-|||.-||+...+.+.++.+..... .+.-
T Consensus 64 ~~~~v~pvvVf~csR~~~lr~~v~kll~yr------PsaekfpiiVSQD~~~e~vk~~~~~~g~~v~--~i~~~~h~~~e 135 (411)
T KOG1413|consen 64 NWPPVIPVVVFACSRADALRRHVKKLLEYR------PSAEKFPIIVSQDCEKEAVKKKLLSYGSDVS--HIQHPMHLKDE 135 (411)
T ss_pred CCCCceeEEEEecCcHHHHHHHHHHHHHhC------cchhhcCEEEeccCCcHHHHHHHHHhccchh--hhcCccccccc
Confidence 445678999999999999999999999842 1234688999999999999988888865543 1111
Q ss_pred EEcCCCCC-----------HHHHHHHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHH
Q 027065 136 ILLGRNHG-----------KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQI 181 (229)
Q Consensus 136 i~~~~~~g-----------k~~a~n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~ 181 (229)
+..+++.+ ...|+|..+..-+.+.++++.+|--+.|+++.......
T Consensus 136 i~v~~~~~k~~~Yy~IarHYkwAL~q~F~~~~~s~vii~eDDl~iapDFF~YF~~t~ 192 (411)
T KOG1413|consen 136 ISVPPRHKKFNAYYKIARHYKWALNQLFIVFRESRVIITEDDLNIAPDFFSYFRNTI 192 (411)
T ss_pred cccCCcccccchhHHHHHHHHHHHhhHHhhcCCceeEEecchhhhhhHHHHHHHHHH
Confidence 11111212 22466666666678999999999999999998877655
No 100
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=95.01 E-value=0.32 Score=38.15 Aligned_cols=99 Identities=13% Similarity=0.125 Sum_probs=60.7
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 027065 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (229)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n~ 150 (229)
++|..+. .-+..+++++.+. .--+|+++-+...+...+.+.+... +. ..+.++..++..|.+.++..
T Consensus 23 ll~v~g~-pli~~~l~~l~~~----------g~~~i~vv~~~~~~~i~~~~~~~~~-~~-~~i~~~~~~~~~g~~~al~~ 89 (217)
T cd04181 23 LLPIAGK-PILEYIIERLARA----------GIDEIILVVGYLGEQIEEYFGDGSK-FG-VNIEYVVQEEPLGTAGAVRN 89 (217)
T ss_pred ccEECCe-eHHHHHHHHHHHC----------CCCEEEEEeccCHHHHHHHHcChhh-cC-ceEEEEeCCCCCccHHHHHH
Confidence 3444444 6677777777661 1346777765433333333322110 11 24666666556888999999
Q ss_pred HHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHH
Q 027065 151 GMLHSRGELLLMLDADGATKVTDLEKLESQIHA 183 (229)
Q Consensus 151 gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~ 183 (229)
|++....+.++++++|.....+ +.++++...+
T Consensus 90 ~~~~~~~~~~lv~~~D~~~~~~-~~~~~~~~~~ 121 (217)
T cd04181 90 AEDFLGDDDFLVVNGDVLTDLD-LSELLRFHRE 121 (217)
T ss_pred hhhhcCCCCEEEEECCeecCcC-HHHHHHHHHh
Confidence 9988877889999999988766 5555555544
No 101
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=94.88 E-value=0.021 Score=46.67 Aligned_cols=114 Identities=11% Similarity=0.069 Sum_probs=67.1
Q ss_pred EEEEEee-cCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHH
Q 027065 68 ISLIIPA-FNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGE 146 (229)
Q Consensus 68 vsviip~-~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~ 146 (229)
+||+|.+ |+..+.|.+.|+++.+ ...--||+||=++....-.. . +..... ..++++..+.| .-.
T Consensus 1 fTvvi~t~~~R~~~L~~~l~~l~~---------~~~l~~IvVvWn~~~~~P~~-~-~~~~~~--vpV~~~~~~~n--sLn 65 (247)
T PF09258_consen 1 FTVVINTSYKRSDLLKRLLRHLAS---------SPSLRKIVVVWNNPNPPPPS-S-KWPSTG--VPVRVVRSSRN--SLN 65 (247)
T ss_dssp EEEEEEE-SS-HHHHHHHHHHHTT---------STTEEEEEEEEE-TS--THH-H-HHT-----S-EEEEEESSH--HGG
T ss_pred CEEEEEecccchHHHHHHHHHHHc---------CCCCCeEEEEeCCCCCCCcc-c-ccCCCC--ceEEEEecCCc--cHH
Confidence 4889999 8887666666666633 23356788876653322212 1 111111 25788876543 112
Q ss_pred HHHHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHhCCcceeecccee
Q 027065 147 AIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVT 196 (229)
Q Consensus 147 a~n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 196 (229)
++-......+++.|+.+|+|..++.+.|+...+..++.|+...++-.+..
T Consensus 66 nRF~p~~~i~T~AVl~~DDDv~~~~~~l~faF~~W~~~pdrlVGf~~R~h 115 (247)
T PF09258_consen 66 NRFLPDPEIETDAVLSLDDDVMLSCDELEFAFQVWREFPDRLVGFPPRSH 115 (247)
T ss_dssp GGGS--TT--SSEEEEEETTEEE-HHHHHHHHHHHCCSTTSEEES-EEEE
T ss_pred hcCcCccccCcceEEEecCCcccCHHHHHHHHHHHHhChhheeCCcccee
Confidence 22234456679999999999999999999999999999987776554433
No 102
>PLN02917 CMP-KDO synthetase
Probab=94.50 E-value=1.2 Score=37.38 Aligned_cols=54 Identities=7% Similarity=0.194 Sum_probs=38.4
Q ss_pred EEEEEc--CCCCCHHHHHHHHHHhcC--CCEEEEEcCCCC-CChhhHHHHHHHHHHhCCc
Q 027065 133 VRIILL--GRNHGKGEAIRKGMLHSR--GELLLMLDADGA-TKVTDLEKLESQIHAVGRK 187 (229)
Q Consensus 133 i~vi~~--~~~~gk~~a~n~gl~~a~--~d~v~~lD~D~~-~~~~~l~~l~~~~~~~~~~ 187 (229)
+.++.. ....|.+.+ ..|++... .|+++++++|.. ++++.+.++++.+.++.+.
T Consensus 109 v~vi~~~~~~~~GT~~~-~~a~~~l~~~~d~Vlil~gD~PlI~~~tI~~li~~~~~~~~~ 167 (293)
T PLN02917 109 ADVIMTSESCRNGTERC-NEALKKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA 167 (293)
T ss_pred CEEEeCCcccCCchHHH-HHHHHhccCCCCEEEEecCCcCCCCHHHHHHHHHHHHhcCCc
Confidence 555543 223455544 46776664 689999999999 5999999999988765544
No 103
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=94.30 E-value=0.94 Score=36.27 Aligned_cols=96 Identities=9% Similarity=0.084 Sum_probs=56.4
Q ss_pred CCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHhc
Q 027065 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS 155 (229)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n~gl~~a 155 (229)
+...-++.+++.+... ...-+++|+-+.... . +.+.++.... .++++.++...+. +....+++..
T Consensus 22 ~Gkpli~~~i~~l~~~---------~~~~~ivVv~~~~~~-~-~~i~~~~~~~---~v~~v~~~~~~~l-~~~~~~~~~~ 86 (233)
T cd02518 22 GGKPLLEHLLDRLKRS---------KLIDEIVIATSTNEE-D-DPLEALAKKL---GVKVFRGSEEDVL-GRYYQAAEEY 86 (233)
T ss_pred CCccHHHHHHHHHHhC---------CCCCeEEEECCCCcc-c-HHHHHHHHHc---CCeEEECCchhHH-HHHHHHHHHc
Confidence 3445666666666551 112356666554431 1 2222333332 4677776643222 2333345455
Q ss_pred CCCEEEEEcCCCCC-ChhhHHHHHHHHHHhCC
Q 027065 156 RGELLLMLDADGAT-KVTDLEKLESQIHAVGR 186 (229)
Q Consensus 156 ~~d~v~~lD~D~~~-~~~~l~~l~~~~~~~~~ 186 (229)
..++++++++|..+ +++.++++++.+.+.+.
T Consensus 87 ~~d~vli~~~D~P~i~~~~i~~li~~~~~~~~ 118 (233)
T cd02518 87 NADVVVRITGDCPLIDPEIIDAVIRLFLKSGA 118 (233)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHHhCCC
Confidence 67999999999985 99999999998876543
No 104
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=94.29 E-value=0.25 Score=47.80 Aligned_cols=52 Identities=19% Similarity=0.211 Sum_probs=43.4
Q ss_pred cEEEEEcCCCCC-----HHHHHHHHHHh----cCCCEEEEEcCCCCCC-hhhHHHHHHHHHH
Q 027065 132 NVRIILLGRNHG-----KGEAIRKGMLH----SRGELLLMLDADGATK-VTDLEKLESQIHA 183 (229)
Q Consensus 132 ~i~vi~~~~~~g-----k~~a~n~gl~~----a~~d~v~~lD~D~~~~-~~~l~~l~~~~~~ 183 (229)
.+-++.++++.| |++|+|..++. ++++||+.+|+|..+. |..+.+.+=.|.+
T Consensus 517 ~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmYiNns~alr~AMCf~lD 578 (1079)
T PLN02638 517 RLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFLMD 578 (1079)
T ss_pred ceEEEecccCCCCCcccccchHHHHHHHhhhccCCCeEeecccCcccCchHHHHHhhhhhcC
Confidence 677777776544 99999999954 4799999999999886 9999998888864
No 105
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=94.10 E-value=0.36 Score=36.90 Aligned_cols=84 Identities=18% Similarity=0.136 Sum_probs=58.4
Q ss_pred CCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcC-CCCCHHHHHHHHHHh
Q 027065 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG-RNHGKGEAIRKGMLH 154 (229)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~-~~~gk~~a~n~gl~~ 154 (229)
+....++.+++.+... .-+|+|+-+..... .. .. +++++..+ ...|...++..|++.
T Consensus 24 ~g~~ll~~~i~~l~~~-----------~~~iivv~~~~~~~----~~----~~---~~~~v~~~~~~~G~~~si~~~l~~ 81 (181)
T cd02503 24 GGKPLLEHVLERLKPL-----------VDEVVISANRDQER----YA----LL---GVPVIPDEPPGKGPLAGILAALRA 81 (181)
T ss_pred CCEEHHHHHHHHHHhh-----------cCEEEEECCCChHH----Hh----hc---CCcEeeCCCCCCCCHHHHHHHHHh
Confidence 3455666666665541 23677765433221 11 11 46666654 367888999999999
Q ss_pred cCCCEEEEEcCCCC-CChhhHHHHHHHH
Q 027065 155 SRGELLLMLDADGA-TKVTDLEKLESQI 181 (229)
Q Consensus 155 a~~d~v~~lD~D~~-~~~~~l~~l~~~~ 181 (229)
...+.++++.+|.. ++++.+..+++.+
T Consensus 82 ~~~~~vlv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 82 APADWVLVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred cCCCeEEEEeCCcCCCCHHHHHHHHHhh
Confidence 88999999999996 5999999999988
No 106
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=94.01 E-value=0.091 Score=40.60 Aligned_cols=37 Identities=24% Similarity=0.279 Sum_probs=30.1
Q ss_pred EEEEEcCCCCCChhhHHHHHHHHHHhCCcceeecccee
Q 027065 159 LLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVT 196 (229)
Q Consensus 159 ~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 196 (229)
||+++|+|+.+++++++++++.++ +++...+.+....
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~-~~~~~~vq~~~~~ 37 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALE-DPKVDAVQGPIIF 37 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHh-CCCceEEEccEEe
Confidence 689999999999999999999999 5666655554443
No 107
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=93.84 E-value=0.23 Score=39.90 Aligned_cols=90 Identities=14% Similarity=0.251 Sum_probs=67.3
Q ss_pred CCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC--CCCHHHHHHHHHHh
Q 027065 77 EEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR--NHGKGEAIRKGMLH 154 (229)
Q Consensus 77 e~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~--~~gk~~a~n~gl~~ 154 (229)
..+-|.++++++.. ..--|+++|-+|=. .+.++++.++++. ..+++.++. ..+.+..+-.|...
T Consensus 30 gr~ii~~~i~~L~~----------~gi~e~vvV~~g~~---~~lve~~l~~~~~-~~~iv~N~~y~ktN~~~Sl~~akd~ 95 (239)
T COG1213 30 GREIIYRTIENLAK----------AGITEFVVVTNGYR---ADLVEEFLKKYPF-NAKIVINSDYEKTNTGYSLLLAKDY 95 (239)
T ss_pred CeEeHHHHHHHHHH----------cCCceEEEEeccch---HHHHHHHHhcCCc-ceEEEeCCCcccCCceeEEeeehhh
Confidence 34567888888877 34578999977544 3556667777774 678888763 23346678888888
Q ss_pred cCCCEEEEEcCCCCCChhhHHHHHHHH
Q 027065 155 SRGELLLMLDADGATKVTDLEKLESQI 181 (229)
Q Consensus 155 a~~d~v~~lD~D~~~~~~~l~~l~~~~ 181 (229)
+.++ ++++++|...+|..+++++++-
T Consensus 96 ~~~~-fii~~sD~vye~~~~e~l~~a~ 121 (239)
T COG1213 96 MDGR-FILVMSDHVYEPSILERLLEAP 121 (239)
T ss_pred hcCc-EEEEeCCEeecHHHHHHHHhCc
Confidence 8888 7889999999999999999853
No 108
>PLN02190 cellulose synthase-like protein
Probab=93.70 E-value=0.37 Score=45.09 Aligned_cols=55 Identities=15% Similarity=0.094 Sum_probs=42.1
Q ss_pred CCceEEEEEeecC---CC-CChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHH
Q 027065 64 AEKYISLIIPAFN---EE-HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDF 124 (229)
Q Consensus 64 ~~p~vsviip~~n---e~-~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~ 124 (229)
..|.|.|.|++++ |+ ..+..++.|+++ .++|..++-++|.|||...-|.+.+.|.
T Consensus 91 ~Lp~VDvFV~TaDP~kEPpl~v~nTvLSilA------~dYP~eklscYvSDDG~s~LT~~al~EA 149 (756)
T PLN02190 91 DLPSVDMFVPTADPVREPPIIVVNTVLSLLA------VNYPANKLACYVSDDGCSPLTYFSLKEA 149 (756)
T ss_pred cCCcceEEEecCCCCcCCHHHHHHHHHHHHh------ccCCccccceEEecCCCcHhHHHHHHHH
Confidence 4688999999999 65 345555666655 3467789999999999999888776654
No 109
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=93.67 E-value=1 Score=35.33 Aligned_cols=98 Identities=16% Similarity=0.130 Sum_probs=59.2
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHc-CCCcEEEEEcCCCCCHHHHHH
Q 027065 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKY-TVDNVRIILLGRNHGKGEAIR 149 (229)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~-~~~~i~vi~~~~~~gk~~a~n 149 (229)
++|..+. ..|...++++.+. .--+|+|+.+...+...+.+. ..+ ....+.+.......|.+.++-
T Consensus 23 ll~i~g~-pli~~~l~~l~~~----------g~~~v~vv~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~G~~~~l~ 88 (223)
T cd06915 23 LAPVAGR-PFLEYLLEYLARQ----------GISRIVLSVGYLAEQIEEYFG---DGYRGGIRIYYVIEPEPLGTGGAIK 88 (223)
T ss_pred ccEECCc-chHHHHHHHHHHC----------CCCEEEEEcccCHHHHHHHHc---CccccCceEEEEECCCCCcchHHHH
Confidence 3444443 5677777666651 123677765533333333322 111 111234444455688888999
Q ss_pred HHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHH
Q 027065 150 KGMLHSRGELLLMLDADGATKVTDLEKLESQIHA 183 (229)
Q Consensus 150 ~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~ 183 (229)
.|++....+.++++.+|..++. .+.++++.+.+
T Consensus 89 ~a~~~~~~~~~lv~~~D~~~~~-~~~~~l~~~~~ 121 (223)
T cd06915 89 NALPKLPEDQFLVLNGDTYFDV-DLLALLAALRA 121 (223)
T ss_pred HHHhhcCCCCEEEEECCcccCC-CHHHHHHHHHh
Confidence 9999887788999999998754 57777777754
No 110
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=93.65 E-value=0.56 Score=41.47 Aligned_cols=96 Identities=15% Similarity=0.150 Sum_probs=62.1
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 027065 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (229)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n~ 150 (229)
++|..+. .-+..+++++.+ ....+++++.....+. +++...++ ++.++..++..|.+.++..
T Consensus 22 l~~i~gk-pli~~~l~~l~~----------~g~~~iiiv~~~~~~~----i~~~~~~~---~i~~~~~~~~~G~~~ai~~ 83 (451)
T TIGR01173 22 LHPLAGK-PMLEHVIDAARA----------LGPQKIHVVYGHGAEQ----VRKALANR---DVNWVLQAEQLGTGHAVLQ 83 (451)
T ss_pred hceeCCc-cHHHHHHHHHHh----------CCCCeEEEEECCCHHH----HHHHhcCC---CcEEEEcCCCCchHHHHHH
Confidence 4454443 566666666655 1124666664432222 23333333 3666666656788888999
Q ss_pred HHHhcC-CCEEEEEcCCC-CCChhhHHHHHHHHHHh
Q 027065 151 GMLHSR-GELLLMLDADG-ATKVTDLEKLESQIHAV 184 (229)
Q Consensus 151 gl~~a~-~d~v~~lD~D~-~~~~~~l~~l~~~~~~~ 184 (229)
|++... .+.++++++|. .++++.+.++++...+.
T Consensus 84 a~~~l~~~~~~lv~~~D~p~i~~~~~~~l~~~~~~~ 119 (451)
T TIGR01173 84 ALPFLPDDGDVLVLYGDVPLISAETLERLLEAHRQN 119 (451)
T ss_pred HHHhcCCCCcEEEEECCcCCcCHHHHHHHHHHHhhC
Confidence 988874 47899999998 57899999999887654
No 111
>PLN03180 reversibly glycosylated polypeptide; Provisional
Probab=93.55 E-value=0.042 Score=46.19 Aligned_cols=86 Identities=17% Similarity=0.297 Sum_probs=52.1
Q ss_pred ceEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHH-------------HHHHHHcCCCc
Q 027065 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVA-------------FDFVRKYTVDN 132 (229)
Q Consensus 66 p~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~-------------~~~~~~~~~~~ 132 (229)
..+.||||+-.+. .+|++...-+. ++++|+|-|+....+..+- .+....++
T Consensus 11 ~evdIVi~TI~~~----~fL~~~r~~l~---------~~h~iiV~d~D~~~~~~~~~G~d~~vy~r~d~~~~Lg~~~--- 74 (346)
T PLN03180 11 DELDIVIPTIRNL----DFLEMWRPFFQ---------PYHLIIVQDGDPSKEIKVPEGFDYELYNRNDINRILGPKA--- 74 (346)
T ss_pred CcceEEEeccCch----hHHHHHHHhcC---------cccEEEEecCCcccceeccCCCceeecCHHHHHhhhcccc---
Confidence 3599999995553 55666555332 5778888875433221111 11111111
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCEEEEEcCCCCCChh
Q 027065 133 VRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVT 172 (229)
Q Consensus 133 i~vi~~~~~~gk~~a~n~gl~~a~~d~v~~lD~D~~~~~~ 172 (229)
+.+ .....+.+|.|+-.++.+|++++|+|+.+..+
T Consensus 75 -~~I----p~~~~a~R~fGyL~s~~~yivsiDDD~~Pa~d 109 (346)
T PLN03180 75 -SCI----SFKDSACRCFGYLVSKKKYIFTIDDDCFVAKD 109 (346)
T ss_pred -ccc----ccCcccchhhhheeecceEEEEECCCCCCCCC
Confidence 111 12223567889888899999999999999887
No 112
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=93.55 E-value=0.96 Score=35.80 Aligned_cols=96 Identities=15% Similarity=0.007 Sum_probs=57.3
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcC-CCCCHHHHHH
Q 027065 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG-RNHGKGEAIR 149 (229)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~-~~~gk~~a~n 149 (229)
++|..+. ..+...|+++.+. .--+|+|+.....+...+.+.+ +...-.+.+.... +..|.++++.
T Consensus 24 llpi~g~-~li~~~l~~l~~~----------gi~~i~iv~~~~~~~i~~~~~~---~~~~~~i~~~~~~~~~~g~~~~l~ 89 (221)
T cd06422 24 LVPVAGK-PLIDHALDRLAAA----------GIRRIVVNTHHLADQIEAHLGD---SRFGLRITISDEPDELLETGGGIK 89 (221)
T ss_pred eeeECCE-EHHHHHHHHHHHC----------CCCEEEEEccCCHHHHHHHHhc---ccCCceEEEecCCCcccccHHHHH
Confidence 4555555 6777777777661 2346666654333333333322 1121123333333 3568889999
Q ss_pred HHHHhcCCCEEEEEcCCCCCChhhHHHHHHHH
Q 027065 150 KGMLHSRGELLLMLDADGATKVTDLEKLESQI 181 (229)
Q Consensus 150 ~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~ 181 (229)
.|+.....+.++++.+|.....+... ++...
T Consensus 90 ~~~~~~~~~~~lv~~~D~i~~~~~~~-~~~~~ 120 (221)
T cd06422 90 KALPLLGDEPFLVVNGDILWDGDLAP-LLLLH 120 (221)
T ss_pred HHHHhcCCCCEEEEeCCeeeCCCHHH-HHHHH
Confidence 99998866889999999998776554 45444
No 113
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=93.39 E-value=1.7 Score=34.09 Aligned_cols=94 Identities=10% Similarity=0.183 Sum_probs=67.9
Q ss_pred cCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC-CCCHHHHHHHHHH
Q 027065 75 FNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR-NHGKGEAIRKGML 153 (229)
Q Consensus 75 ~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~-~~gk~~a~n~gl~ 153 (229)
++....+..+++..++ ..--++|+|.-.- ..+..+..... .+++++.++. ..|.+.++..|++
T Consensus 28 ~~g~plv~~~~~~a~~----------a~~~~vivV~g~~---~~~~~~a~~~~---~~~~~v~npd~~~Gls~Sl~ag~~ 91 (199)
T COG2068 28 LDGKPLVRASAETALS----------AGLDRVIVVTGHR---VAEAVEALLAQ---LGVTVVVNPDYAQGLSTSLKAGLR 91 (199)
T ss_pred cCCCcHHHHHHHHHHh----------cCCCeEEEEeCcc---hhhHHHhhhcc---CCeEEEeCcchhhhHhHHHHHHHH
Confidence 4444566666666665 2234777776644 33333333332 2688988875 6899999999999
Q ss_pred hcCCC--EEEEEcCCCC-CChhhHHHHHHHHHHh
Q 027065 154 HSRGE--LLLMLDADGA-TKVTDLEKLESQIHAV 184 (229)
Q Consensus 154 ~a~~d--~v~~lD~D~~-~~~~~l~~l~~~~~~~ 184 (229)
.+.++ .++++=+|.. +.++.+.++.+.+...
T Consensus 92 a~~~~~~~v~~~lgDmP~V~~~t~~rl~~~~~~~ 125 (199)
T COG2068 92 AADAEGDGVVLMLGDMPQVTPATVRRLIAAFRAR 125 (199)
T ss_pred hcccCCCeEEEEeCCCCCCCHHHHHHHHHhcccc
Confidence 99765 9999999988 7999999999999876
No 114
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=93.33 E-value=1.9 Score=38.45 Aligned_cols=98 Identities=13% Similarity=0.152 Sum_probs=64.1
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 027065 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (229)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n~ 150 (229)
++|..+. .-++..|+++.+ ..-.+++++-....+ ++ .++..+.. .+.++..++..|.+.++..
T Consensus 25 l~pi~g~-pli~~~l~~l~~----------~gi~~iiiv~~~~~~---~i-~~~~~~~~--~i~~~~~~~~~Gt~~al~~ 87 (459)
T PRK14355 25 MHPLAGR-PMVSWPVAAARE----------AGAGRIVLVVGHQAE---KV-REHFAGDG--DVSFALQEEQLGTGHAVAC 87 (459)
T ss_pred eceeCCc-cHHHHHHHHHHh----------cCCCeEEEEECCCHH---HH-HHHhccCC--ceEEEecCCCCCHHHHHHH
Confidence 5555554 566666666655 123466666553222 22 22222222 4666666667888899999
Q ss_pred HHHhcC--CCEEEEEcCCC-CCChhhHHHHHHHHHHhC
Q 027065 151 GMLHSR--GELLLMLDADG-ATKVTDLEKLESQIHAVG 185 (229)
Q Consensus 151 gl~~a~--~d~v~~lD~D~-~~~~~~l~~l~~~~~~~~ 185 (229)
|++... .+.++++++|. .+.+..+.++++...+..
T Consensus 88 a~~~l~~~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~ 125 (459)
T PRK14355 88 AAPALDGFSGTVLILCGDVPLLRAETLQGMLAAHRATG 125 (459)
T ss_pred HHHHhhccCCcEEEEECCccCcCHHHHHHHHHHHHhcC
Confidence 988764 47899999999 578999999999876543
No 115
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=93.15 E-value=0.21 Score=40.22 Aligned_cols=102 Identities=14% Similarity=0.130 Sum_probs=66.6
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcC-C-CcEEEEEcCCCCCHHHHH
Q 027065 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYT-V-DNVRIILLGRNHGKGEAI 148 (229)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~-~-~~i~vi~~~~~~gk~~a~ 148 (229)
++|..|..+-|...|+.+.+ ..--++|+|..+.. .+.+.++..... . ..+.++..++..|.+.|+
T Consensus 24 ll~i~g~~pli~~~l~~l~~----------~g~~~ii~V~~~~~---~~~i~~~~~~~~~~~~~i~~i~~~~~~Gta~al 90 (248)
T PF00483_consen 24 LLPIGGKYPLIDYVLENLAN----------AGIKEIIVVVNGYK---EEQIEEHLGSGYKFGVKIEYIVQPEPLGTAGAL 90 (248)
T ss_dssp GSEETTEEEHHHHHHHHHHH----------TTCSEEEEEEETTT---HHHHHHHHTTSGGGTEEEEEEEESSSSCHHHHH
T ss_pred cceecCCCcchhhhhhhhcc----------cCCceEEEEEeecc---cccccccccccccccccceeeecccccchhHHH
Confidence 45566664566666666665 22456455544332 222333333332 1 147788888888999999
Q ss_pred HHHHHhcCCCE----EEEEcCCCCCChhhHHHHHHHHHHhCC
Q 027065 149 RKGMLHSRGEL----LLMLDADGATKVTDLEKLESQIHAVGR 186 (229)
Q Consensus 149 n~gl~~a~~d~----v~~lD~D~~~~~~~l~~l~~~~~~~~~ 186 (229)
..+......+. ++++.+|...+. .+..+++...+...
T Consensus 91 ~~a~~~i~~~~~~~~~lv~~gD~i~~~-~~~~~l~~~~~~~~ 131 (248)
T PF00483_consen 91 LQALDFIEEEDDDEDFLVLNGDIIFDD-DLQDMLEFHRESNA 131 (248)
T ss_dssp HHTHHHHTTSEE-SEEEEETTEEEEST-THHHHHHHHHHHSS
T ss_pred HHHHHHhhhccccceEEEEeccccccc-hhhhHHHhhhcccc
Confidence 99999887765 999999998888 67777777766554
No 116
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=93.12 E-value=1.1 Score=39.64 Aligned_cols=99 Identities=15% Similarity=0.132 Sum_probs=62.7
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 027065 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (229)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n~ 150 (229)
++|..+. ..++.+|+++.+ ....+++++-....+. ++++..+.. .++++..+...|.+.++..
T Consensus 23 ll~v~gk-pli~~~l~~l~~----------~g~~~iivvv~~~~~~----i~~~~~~~~--~i~~v~~~~~~G~~~sv~~ 85 (450)
T PRK14360 23 LHPLGGK-SLVERVLDSCEE----------LKPDRRLVIVGHQAEE----VEQSLAHLP--GLEFVEQQPQLGTGHAVQQ 85 (450)
T ss_pred cCEECCh-hHHHHHHHHHHh----------CCCCeEEEEECCCHHH----HHHHhcccC--CeEEEEeCCcCCcHHHHHH
Confidence 4454443 666677776665 1224566665433222 233333333 5777776656777888888
Q ss_pred HHHhcC--CCEEEEEcCCC-CCChhhHHHHHHHHHHhCC
Q 027065 151 GMLHSR--GELLLMLDADG-ATKVTDLEKLESQIHAVGR 186 (229)
Q Consensus 151 gl~~a~--~d~v~~lD~D~-~~~~~~l~~l~~~~~~~~~ 186 (229)
+++... .+.++++++|. .+.+..++++++.+.+.+.
T Consensus 86 ~~~~l~~~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~ 124 (450)
T PRK14360 86 LLPVLKGFEGDLLVLNGDVPLLRPETLEALLNTHRSSNA 124 (450)
T ss_pred HHHHhhccCCcEEEEeCCccccCHHHHHHHHHHHHhcCC
Confidence 887653 45678899998 4689999999998876543
No 117
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=93.11 E-value=0.77 Score=36.04 Aligned_cols=52 Identities=19% Similarity=0.224 Sum_probs=43.8
Q ss_pred cEEEEEcCC-CCCHHHHHHHHHHhcCCCEEEEEcCCCCC-ChhhHHHHHHHHHH
Q 027065 132 NVRIILLGR-NHGKGEAIRKGMLHSRGELLLMLDADGAT-KVTDLEKLESQIHA 183 (229)
Q Consensus 132 ~i~vi~~~~-~~gk~~a~n~gl~~a~~d~v~~lD~D~~~-~~~~l~~l~~~~~~ 183 (229)
+++++..+. ..|...++..|++....++++++++|..+ +++.++++++..++
T Consensus 67 ~~~~i~~~~~~~G~~~si~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 120 (200)
T PRK02726 67 GCHWLREPPPSQGPLVAFAQGLPQIKTEWVLLLACDLPRLTVDVLQEWLQQLEN 120 (200)
T ss_pred CCeEecCCCCCCChHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 466666543 47888999999999888999999999986 99999999998865
No 118
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=93.11 E-value=2 Score=34.20 Aligned_cols=99 Identities=13% Similarity=0.081 Sum_probs=57.4
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 027065 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (229)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n~ 150 (229)
++|..+. .-++..++++.+ . .--+++|+.....+...+.+++.. .++ ..+.++..+...|.+.++..
T Consensus 25 l~~i~g~-~li~~~l~~l~~--------~--~~~~i~vv~~~~~~~~~~~~~~~~-~~~-~~i~~~~~~~~~g~~~sl~~ 91 (236)
T cd04189 25 LIPVAGK-PIIQYAIEDLRE--------A--GIEDIGIVVGPTGEEIKEALGDGS-RFG-VRITYILQEEPLGLAHAVLA 91 (236)
T ss_pred eeEECCc-chHHHHHHHHHH--------C--CCCEEEEEcCCCHHHHHHHhcchh-hcC-CeEEEEECCCCCChHHHHHH
Confidence 4555454 677777777665 1 134677776543333333333211 112 13555555556788899999
Q ss_pred HHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHH
Q 027065 151 GMLHSRGELLLMLDADGATKVTDLEKLESQIHA 183 (229)
Q Consensus 151 gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~ 183 (229)
|......+-++++.+|...+.+. .+++.....
T Consensus 92 a~~~i~~~~~li~~~D~~~~~~~-~~~~~~~~~ 123 (236)
T cd04189 92 ARDFLGDEPFVVYLGDNLIQEGI-SPLVRDFLE 123 (236)
T ss_pred HHHhcCCCCEEEEECCeecCcCH-HHHHHHHHh
Confidence 99887533355578898887664 456555443
No 119
>PLN02195 cellulose synthase A
Probab=93.00 E-value=0.23 Score=47.58 Aligned_cols=42 Identities=14% Similarity=0.055 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHh----cCCCEEEEEcCCCCCCh-hhHHHHHHHHHHh
Q 027065 143 GKGEAIRKGMLH----SRGELLLMLDADGATKV-TDLEKLESQIHAV 184 (229)
Q Consensus 143 gk~~a~n~gl~~----a~~d~v~~lD~D~~~~~-~~l~~l~~~~~~~ 184 (229)
-|++|+|.+++. ++++||+.+|+|..+.+ +++.+.+=.|.+.
T Consensus 436 ~KAGamNallrvSavmTNap~il~lDcDmy~n~s~~lr~AMCf~~D~ 482 (977)
T PLN02195 436 KKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFLMDP 482 (977)
T ss_pred cccchhHHHHHHhhhccCCCeEEEecCccccCcHHHHHHHHhhccCc
Confidence 399999999975 46999999999998866 6888888877653
No 120
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=92.74 E-value=0.84 Score=36.34 Aligned_cols=90 Identities=13% Similarity=0.144 Sum_probs=58.1
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC--CCCHHHHH
Q 027065 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR--NHGKGEAI 148 (229)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~--~~gk~~a~ 148 (229)
++|.-+. ..++..|+++.+. .--+|+||-.... +.++++..... ++.++.+++ ..|.+.++
T Consensus 23 l~~~~g~-~li~~~l~~l~~~----------gi~~i~vv~~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~g~~~s~ 85 (229)
T cd02523 23 LLEINGK-PLLERQIETLKEA----------GIDDIVIVTGYKK----EQIEELLKKYP--NIKFVYNPDYAETNNIYSL 85 (229)
T ss_pred eeeECCE-EHHHHHHHHHHHC----------CCceEEEEeccCH----HHHHHHHhccC--CeEEEeCcchhhhCcHHHH
Confidence 4444443 6677777776661 2346777655322 23333333323 577777654 47888899
Q ss_pred HHHHHhcCCCEEEEEcCCCCCChhhHHHHH
Q 027065 149 RKGMLHSRGELLLMLDADGATKVTDLEKLE 178 (229)
Q Consensus 149 n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~ 178 (229)
..|+... .+.++++.+|....++.++.+.
T Consensus 86 ~~~~~~~-~~~~lv~~~D~~~~~~~~~~~~ 114 (229)
T cd02523 86 YLARDFL-DEDFLLLEGDVVFDPSILERLL 114 (229)
T ss_pred HHHHHHc-CCCEEEEeCCEecCHHHHHHHH
Confidence 9998888 6778999999999887666655
No 121
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=92.63 E-value=1.2 Score=34.65 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=41.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHhcC--CCEEEEEcCCCC-CChhhHHHHHHHHHH
Q 027065 132 NVRIILLGRNHGKGEAIRKGMLHSR--GELLLMLDADGA-TKVTDLEKLESQIHA 183 (229)
Q Consensus 132 ~i~vi~~~~~~gk~~a~n~gl~~a~--~d~v~~lD~D~~-~~~~~l~~l~~~~~~ 183 (229)
++.++.++. .|...++..|++... ++.++++-+|.. ++++.++++++.++.
T Consensus 65 ~v~~i~~~~-~G~~~si~~al~~~~~~~~~vlv~~~D~P~l~~~~i~~l~~~~~~ 118 (195)
T TIGR03552 65 GAPVLRDPG-PGLNNALNAALAEAREPGGAVLILMADLPLLTPRELKRLLAAATE 118 (195)
T ss_pred CCEEEecCC-CCHHHHHHHHHHHhhccCCeEEEEeCCCCCCCHHHHHHHHHhccc
Confidence 467776653 489999999998754 468999999988 599999999998753
No 122
>PF11397 GlcNAc: Glycosyltransferase (GlcNAc); InterPro: IPR021067 GlcNAc is an enzyme that carries out the first glycosylation step of hydroxylated Skp1; it is found in the cytoplasm and results in a pentasaccharide-linked 'HyPro-143[, ].
Probab=92.57 E-value=2.3 Score=36.49 Aligned_cols=111 Identities=14% Similarity=0.130 Sum_probs=75.8
Q ss_pred EEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchH--H----------------HHHHHHHH--
Q 027065 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTK--R----------------VAFDFVRK-- 127 (229)
Q Consensus 68 vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~--~----------------~~~~~~~~-- 127 (229)
|-|.|++|...+ ...||.+++++.. ...++-|=|++....+... . ....+...
T Consensus 2 IFvsiasyRD~~-c~~Tl~~~~~~A~------~P~r~~~gv~~Q~~~~~~~c~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 74 (343)
T PF11397_consen 2 IFVSIASYRDPE-CAPTLKDLFARAT------NPERLFVGVVWQHYEEDPPCLSEGAPMDPGVHAAREEECVYCFLASSA 74 (343)
T ss_pred EEEEEeeecCch-HHHHHHHHHHhcC------CCceEEEEEEEEecCCCCcccccccccccccccccccchhhhhhhccc
Confidence 678899998864 7788888887432 2345666666654432221 0 01111111
Q ss_pred ----------cCCCcEEEEEcC--CCCCHHHHHHHHHHhcCC-CEEEEEcCCCCCChhhHHHHHHHHHHhC
Q 027065 128 ----------YTVDNVRIILLG--RNHGKGEAIRKGMLHSRG-ELLLMLDADGATKVTDLEKLESQIHAVG 185 (229)
Q Consensus 128 ----------~~~~~i~vi~~~--~~~gk~~a~n~gl~~a~~-d~v~~lD~D~~~~~~~l~~l~~~~~~~~ 185 (229)
....+|++++.+ +..|...|++.+.+.-++ +|++.+|+...+.++|=+.+++.++..+
T Consensus 75 ~~~~~~~~~~~~~~~Ir~~~~~~~~a~Gp~~AR~la~~l~~gE~y~LqiDSH~rF~~~WD~~li~~~~~~~ 145 (343)
T PF11397_consen 75 CAEWPDGALCLRSDQIRVIRVDASEARGPCWARYLAQKLYRGEDYYLQIDSHMRFVPGWDEILIEMLKSLR 145 (343)
T ss_pred ccccccccccccCCeEEEEEeCHHHCcChHHHHHHHHHHhCCCeEEEEEeccceeeccHHHHHHHHHHhcC
Confidence 112467777765 458999999999988775 8999999999999999999999887653
No 123
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=92.24 E-value=2.4 Score=35.54 Aligned_cols=97 Identities=18% Similarity=0.189 Sum_probs=62.7
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHH---HcCCCcEEEEEcCCCCCHHHH
Q 027065 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVR---KYTVDNVRIILLGRNHGKGEA 147 (229)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~---~~~~~~i~vi~~~~~~gk~~a 147 (229)
++|.++. +.|.-.|.++.. ..--+|+++..... .+.++++.. ++. .++.++..++..|.+.|
T Consensus 28 Llpv~gk-PmI~~~l~~l~~----------aGi~~I~ii~~~~~---~~~~~~~l~~g~~~g-~~i~y~~q~~~~Gta~A 92 (292)
T PRK15480 28 LLPIYDK-PMIYYPLSTLML----------AGIRDILIISTPQD---TPRFQQLLGDGSQWG-LNLQYKVQPSPDGLAQA 92 (292)
T ss_pred EeEECCE-EHHHHHHHHHHH----------CCCCEEEEEecCCc---hHHHHHHHcCccccC-ceeEEEECCCCCCHHHH
Confidence 7788887 677777777776 12357776654322 122333322 222 25677777778899999
Q ss_pred HHHHHHhcCC-CEEEEEcCCCCCChhhHHHHHHHHHH
Q 027065 148 IRKGMLHSRG-ELLLMLDADGATKVTDLEKLESQIHA 183 (229)
Q Consensus 148 ~n~gl~~a~~-d~v~~lD~D~~~~~~~l~~l~~~~~~ 183 (229)
+..|...... ++++++ +|+.+....+..+++...+
T Consensus 93 l~~a~~~i~~~~~~lv~-gD~i~~~~~l~~ll~~~~~ 128 (292)
T PRK15480 93 FIIGEEFIGGDDCALVL-GDNIFYGHDLPKLMEAAVN 128 (292)
T ss_pred HHHHHHHhCCCCEEEEE-CCeeeeccCHHHHHHHHHh
Confidence 9999988754 666655 7766656668888886644
No 124
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=92.15 E-value=1.6 Score=34.95 Aligned_cols=101 Identities=11% Similarity=0.124 Sum_probs=59.5
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEE--cCCCCCHHHHH
Q 027065 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIIL--LGRNHGKGEAI 148 (229)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~--~~~~~gk~~a~ 148 (229)
++|..+. ..+..+++++.++ .--+|+|+-....+...+.+.+..... ++.++. .++..|.+.++
T Consensus 25 llpv~g~-pli~~~l~~l~~~----------g~~~v~iv~~~~~~~~~~~l~~~~~~~---~~~i~~~~~~~~~G~~~al 90 (233)
T cd06425 25 LVEFCNK-PMIEHQIEALAKA----------GVKEIILAVNYRPEDMVPFLKEYEKKL---GIKITFSIETEPLGTAGPL 90 (233)
T ss_pred cCeECCc-chHHHHHHHHHHC----------CCcEEEEEeeeCHHHHHHHHhcccccC---CeEEEeccCCCCCccHHHH
Confidence 4455554 6677777777661 123566665544343444443321111 344443 34457888899
Q ss_pred HHHHHhcCC--CEEEEEcCCCCCChhhHHHHHHHHHHhCC
Q 027065 149 RKGMLHSRG--ELLLMLDADGATKVTDLEKLESQIHAVGR 186 (229)
Q Consensus 149 n~gl~~a~~--d~v~~lD~D~~~~~~~l~~l~~~~~~~~~ 186 (229)
..|....+. +-++++.+|.....+ +.++++...+...
T Consensus 91 ~~a~~~~~~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~~~ 129 (233)
T cd06425 91 ALARDLLGDDDEPFFVLNSDVICDFP-LAELLDFHKKHGA 129 (233)
T ss_pred HHHHHHhccCCCCEEEEeCCEeeCCC-HHHHHHHHHHcCC
Confidence 988887753 446777899887655 5788887765443
No 125
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=92.13 E-value=1.1 Score=35.88 Aligned_cols=96 Identities=15% Similarity=0.228 Sum_probs=58.4
Q ss_pred CCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCC--CcEEEEEcCCCCCHHHHHHHHHH
Q 027065 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTV--DNVRIILLGRNHGKGEAIRKGML 153 (229)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~--~~i~vi~~~~~~gk~~a~n~gl~ 153 (229)
+...-+..+++++... ..--+|+||.+. +....+++...++.. .++.++.. ..+...++..|++
T Consensus 28 ~gkpll~~~i~~~~~~---------~~~~~ivVv~~~---~~~~~~~~~~~~~~~~~~~~~~v~~--g~~r~~sv~~gl~ 93 (230)
T PRK13385 28 VGEPIFIHALRPFLAD---------NRCSKIIIVTQA---QERKHVQDLMKQLNVADQRVEVVKG--GTERQESVAAGLD 93 (230)
T ss_pred CCeEHHHHHHHHHHcC---------CCCCEEEEEeCh---hhHHHHHHHHHhcCcCCCceEEcCC--CchHHHHHHHHHH
Confidence 3455666677766551 113466666543 222333333333321 13444432 2345688888888
Q ss_pred hcC-CCEEEEEcCCCCC-ChhhHHHHHHHHHHhC
Q 027065 154 HSR-GELLLMLDADGAT-KVTDLEKLESQIHAVG 185 (229)
Q Consensus 154 ~a~-~d~v~~lD~D~~~-~~~~l~~l~~~~~~~~ 185 (229)
... .++++++|+|..+ +++.+.++++.+.+.+
T Consensus 94 ~~~~~d~vli~~~d~P~i~~~~i~~li~~~~~~~ 127 (230)
T PRK13385 94 RIGNEDVILVHDGARPFLTQDIIDRLLEGVAKYG 127 (230)
T ss_pred hccCCCeEEEccCCCCCCCHHHHHHHHHHHhhCC
Confidence 763 5789999999986 9999999999987654
No 126
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=92.12 E-value=4 Score=32.61 Aligned_cols=90 Identities=9% Similarity=0.138 Sum_probs=53.6
Q ss_pred CCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC--CCCHHHHHHHHHH
Q 027065 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR--NHGKGEAIRKGML 153 (229)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~--~~gk~~a~n~gl~ 153 (229)
+...-++..++.+.+. ..--+|+|+-+ .+ .+.++..+++ ++++..++ ..|.+ .+-.+++
T Consensus 24 ~gkpll~~~l~~l~~~---------~~i~~ivvv~~--~~----~i~~~~~~~~---~~~~~~~~~~~~gt~-~~~~~~~ 84 (239)
T cd02517 24 AGKPMIQHVYERAKKA---------KGLDEVVVATD--DE----RIADAVESFG---GKVVMTSPDHPSGTD-RIAEVAE 84 (239)
T ss_pred CCcCHHHHHHHHHHhC---------CCCCEEEEECC--cH----HHHHHHHHcC---CEEEEcCcccCchhH-HHHHHHH
Confidence 3445666666666551 12346776643 12 2333333333 55554432 33544 3445555
Q ss_pred hcCC--CEEEEEcCCC-CCChhhHHHHHHHHHHh
Q 027065 154 HSRG--ELLLMLDADG-ATKVTDLEKLESQIHAV 184 (229)
Q Consensus 154 ~a~~--d~v~~lD~D~-~~~~~~l~~l~~~~~~~ 184 (229)
.... +.++++++|. .++++.+..+++.+.+.
T Consensus 85 ~~~~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~ 118 (239)
T cd02517 85 KLDADDDIVVNVQGDEPLIPPEMIDQVVAALKDD 118 (239)
T ss_pred hcCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhC
Confidence 5554 8999999999 67899999999988654
No 127
>PF03360 Glyco_transf_43: Glycosyltransferase family 43; InterPro: IPR005027 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 43 GT43 from CAZY comprises enzymes with only one known activities; beta-glucuronyltransferase(2.4.1 from EC);.; GO: 0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, 0016020 membrane; PDB: 2D0J_B 3CU0_A 1FGG_B 1KWS_B 1V84_B 1V83_B 1V82_A.
Probab=92.07 E-value=0.45 Score=37.67 Aligned_cols=67 Identities=10% Similarity=0.125 Sum_probs=40.0
Q ss_pred ceEEEEEECCCCcc--hHHHHHHHHHHcCCCcEEEEEc--CC-------CCCH---HHHHHHHHHhcC-------CCEEE
Q 027065 103 TYEVLIIDDGSSDG--TKRVAFDFVRKYTVDNVRIILL--GR-------NHGK---GEAIRKGMLHSR-------GELLL 161 (229)
Q Consensus 103 ~~eiivvdd~s~d~--t~~~~~~~~~~~~~~~i~vi~~--~~-------~~gk---~~a~n~gl~~a~-------~d~v~ 161 (229)
++..|||+|++.-. +.+++++. ++.+.+. +. +..+ ...+|.|++..+ .-+|.
T Consensus 10 ~l~WIVVEd~~~~~~~v~~lL~~s-------gl~y~hL~~~~p~~~~~~~~~~~rg~~qRn~AL~~ir~~~~~~~~GVVy 82 (207)
T PF03360_consen 10 PLHWIVVEDSEETTPLVARLLRRS-------GLPYTHLNVKTPSNFKDPRWIKPRGVHQRNAALRWIRNNANHRLDGVVY 82 (207)
T ss_dssp SEEEEEEESSSS--HHHHHHHHHH-------TSEEEEEE----HHHH-------TSHHHHHHHHHHHHSTTTSSS-EEEE
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHc-------CCceeEEecCCccccccccccccccHHHHHHHHHHHHhcccCCCCcEEE
Confidence 89999999987532 55665554 2333332 21 1112 457899998654 36889
Q ss_pred EEcCCCCCChhhHHH
Q 027065 162 MLDADGATKVTDLEK 176 (229)
Q Consensus 162 ~lD~D~~~~~~~l~~ 176 (229)
|.|+|..++...+++
T Consensus 83 FaDDdNtYdl~LF~e 97 (207)
T PF03360_consen 83 FADDDNTYDLRLFDE 97 (207)
T ss_dssp E--TTSEE-HHHHHH
T ss_pred ECCCCCeeeHHHHHH
Confidence 999999998887777
No 128
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=92.02 E-value=2.2 Score=34.73 Aligned_cols=103 Identities=14% Similarity=0.092 Sum_probs=62.2
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 027065 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (229)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n~ 150 (229)
.+|..+. ..|+..|+++.+. ..--+|+|+-....+...+.+.+...... ..+.++..++..|.++++..
T Consensus 25 llpv~g~-plI~~~l~~l~~~---------~gi~~i~iv~~~~~~~i~~~l~~~~~~~~-~~i~~~~~~~~~Gt~~al~~ 93 (257)
T cd06428 25 LFPVAGK-PMIHHHIEACAKV---------PDLKEVLLIGFYPESVFSDFISDAQQEFN-VPIRYLQEYKPLGTAGGLYH 93 (257)
T ss_pred cCeECCe-eHHHHHHHHHHhc---------CCCcEEEEEecCCHHHHHHHHHhcccccC-ceEEEecCCccCCcHHHHHH
Confidence 5666665 6777777766651 12347777765444444444433211111 23555555556788888877
Q ss_pred HHHhcC---CCEEEEEcCCCCCChhhHHHHHHHHHHhC
Q 027065 151 GMLHSR---GELLLMLDADGATKVTDLEKLESQIHAVG 185 (229)
Q Consensus 151 gl~~a~---~d~v~~lD~D~~~~~~~l~~l~~~~~~~~ 185 (229)
+..... .+.++++.+|..... .+..+++...+..
T Consensus 94 a~~~l~~~~~~~~lv~~gD~~~~~-dl~~~~~~h~~~~ 130 (257)
T cd06428 94 FRDQILAGNPSAFFVLNADVCCDF-PLQELLEFHKKHG 130 (257)
T ss_pred HHHHhhccCCCCEEEEcCCeecCC-CHHHHHHHHHHcC
Confidence 776542 467888999988655 4888888766544
No 129
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=91.88 E-value=5.4 Score=31.68 Aligned_cols=43 Identities=16% Similarity=0.328 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHhc-CCCEEEEEcCCCC-CChhhHHHHHHHHHHhC
Q 027065 143 GKGEAIRKGMLHS-RGELLLMLDADGA-TKVTDLEKLESQIHAVG 185 (229)
Q Consensus 143 gk~~a~n~gl~~a-~~d~v~~lD~D~~-~~~~~l~~l~~~~~~~~ 185 (229)
+...++..|++.. +.++++++|+|.. ++++.+.++++.+.+++
T Consensus 81 ~~~~sv~~~l~~~~~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~ 125 (227)
T PRK00155 81 ERQDSVLNGLQALPDDDWVLVHDAARPFLTPDDIDRLIEAAEETG 125 (227)
T ss_pred hHHHHHHHHHHhCCCCCEEEEccCccCCCCHHHHHHHHHHHhhCC
Confidence 5788888888876 5789999999987 59999999999987653
No 130
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=91.73 E-value=3 Score=34.44 Aligned_cols=95 Identities=17% Similarity=0.188 Sum_probs=59.4
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHH-cCCCcEEEEEcCCCCCHHHHHH
Q 027065 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK-YTVDNVRIILLGRNHGKGEAIR 149 (229)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~-~~~~~i~vi~~~~~~gk~~a~n 149 (229)
.+|..+...-++.+++++... .+.-+|+|+-+.. -.+.+++.... .+ .++++..+...|.+.|+.
T Consensus 26 ll~l~g~~~li~~~l~~l~~~---------~~~~~i~vvt~~~---~~~~v~~~l~~~~~--~~~ii~ep~~~gTa~ai~ 91 (274)
T cd02509 26 FLKLFGDKSLLQQTLDRLKGL---------VPPDRILVVTNEE---YRFLVREQLPEGLP--EENIILEPEGRNTAPAIA 91 (274)
T ss_pred EeEcCCCCcHHHHHHHHHhcC---------CCCCcEEEEechH---HHHHHHHHHhhcCC--CceEEECCCCCCcHHHHH
Confidence 566666666777777776651 1124777776521 22333333333 23 678887777788888888
Q ss_pred HHHHhcC----CCEEEEEcCCCCCCh-hhHHHHHH
Q 027065 150 KGMLHSR----GELLLMLDADGATKV-TDLEKLES 179 (229)
Q Consensus 150 ~gl~~a~----~d~v~~lD~D~~~~~-~~l~~l~~ 179 (229)
.|..... .++++++.+|..+.. ..+.++++
T Consensus 92 ~a~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~ 126 (274)
T cd02509 92 LAALYLAKRDPDAVLLVLPSDHLIEDVEAFLKAVK 126 (274)
T ss_pred HHHHHHHhcCCCCeEEEecchhcccCHHHHHHHHH
Confidence 8877653 579999999988863 44444443
No 131
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=91.66 E-value=3.3 Score=34.53 Aligned_cols=98 Identities=17% Similarity=0.172 Sum_probs=60.8
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHH---cCCCcEEEEEcCCCCCHHHH
Q 027065 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK---YTVDNVRIILLGRNHGKGEA 147 (229)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~---~~~~~i~vi~~~~~~gk~~a 147 (229)
++|.++. +.|.-.|..+.. ..--+|+||..... .+.++++... +. -++.++..++..|.+.|
T Consensus 24 Llpv~gk-PmI~~~L~~l~~----------aGi~~I~iv~~~~~---~~~~~~~lg~g~~~g-~~i~~~~q~~~~Gta~a 88 (286)
T TIGR01207 24 LLPIYDK-PMIYYPLSTLML----------AGIRDILIISTPQD---TPRFQQLLGDGSQWG-VNLSYAVQPSPDGLAQA 88 (286)
T ss_pred eeEECCE-EhHHHHHHHHHH----------CCCCEEEEEecCCc---HHHHHHHhccccccC-ceEEEEEccCCCCHHHH
Confidence 6788886 677777777766 12346766643222 1222333222 21 24566666667899999
Q ss_pred HHHHHHhcCC-CEEEEEcCCCCCChhhHHHHHHHHHHh
Q 027065 148 IRKGMLHSRG-ELLLMLDADGATKVTDLEKLESQIHAV 184 (229)
Q Consensus 148 ~n~gl~~a~~-d~v~~lD~D~~~~~~~l~~l~~~~~~~ 184 (229)
+-.|...... ++++++ +|+.+.+..+..+++...+.
T Consensus 89 l~~a~~~l~~~~~~li~-gD~i~~~~~l~~ll~~~~~~ 125 (286)
T TIGR01207 89 FIIGEDFIGGDPSALVL-GDNIFYGHDLSDLLKRAAAR 125 (286)
T ss_pred HHHHHHHhCCCCEEEEE-CCEeccccCHHHHHHHHHhc
Confidence 9999988764 555554 77666667788888766443
No 132
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=91.57 E-value=1.7 Score=34.14 Aligned_cols=100 Identities=14% Similarity=0.199 Sum_probs=59.5
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 027065 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (229)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n~ 150 (229)
++|. +....++.+++++... ...-+|+|+-+.... +....+........+.++..+ .|...++..
T Consensus 22 l~~i-~Gkpll~~~i~~l~~~---------~~~~~ivVv~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~si~~ 86 (218)
T cd02516 22 FLEL-GGKPVLEHTLEAFLAH---------PAIDEIVVVVPPDDI---DLAKELAKYGLSKVVKIVEGG--ATRQDSVLN 86 (218)
T ss_pred eeEE-CCeEHHHHHHHHHhcC---------CCCCEEEEEeChhHH---HHHHHHHhcccCCCeEEECCc--hHHHHHHHH
Confidence 3443 3445666666666541 112467776543322 222222111111134444332 356788999
Q ss_pred HHHhc---CCCEEEEEcCCCC-CChhhHHHHHHHHHHhC
Q 027065 151 GMLHS---RGELLLMLDADGA-TKVTDLEKLESQIHAVG 185 (229)
Q Consensus 151 gl~~a---~~d~v~~lD~D~~-~~~~~l~~l~~~~~~~~ 185 (229)
|++.. ..++++++++|.. ++++.++++++.+.+..
T Consensus 87 al~~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~ 125 (218)
T cd02516 87 GLKALPDADPDIVLIHDAARPFVSPELIDRLIDALKEYG 125 (218)
T ss_pred HHHhcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhCC
Confidence 99876 4689999999987 59999999999987654
No 133
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=91.52 E-value=1.8 Score=33.15 Aligned_cols=52 Identities=13% Similarity=0.143 Sum_probs=42.5
Q ss_pred EEEEEcC--CCCCHHHHHHHHHHhcCCCEEEEEcCCC-CCChhhHHHHHHHHHHh
Q 027065 133 VRIILLG--RNHGKGEAIRKGMLHSRGELLLMLDADG-ATKVTDLEKLESQIHAV 184 (229)
Q Consensus 133 i~vi~~~--~~~gk~~a~n~gl~~a~~d~v~~lD~D~-~~~~~~l~~l~~~~~~~ 184 (229)
++++... ...|...++..|++....++++++++|. .++++.++++++.+.+.
T Consensus 62 ~~~i~~~~~~~~g~~~si~~al~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~ 116 (186)
T TIGR02665 62 LPVVPDALADFPGPLAGILAGLRWAGTDWVLTVPCDTPFLPEDLVARLAAALEAS 116 (186)
T ss_pred CcEEecCCCCCCCCHHHHHHHHHhcCCCeEEEEecCCCcCCHHHHHHHHHHhhcc
Confidence 4555543 3578889999999988889999999998 57999999999988653
No 134
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=91.13 E-value=5 Score=31.54 Aligned_cols=94 Identities=18% Similarity=0.252 Sum_probs=57.4
Q ss_pred CCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHhc
Q 027065 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS 155 (229)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n~gl~~a 155 (229)
+...-++.+++++.. ....-+|+|+-+... .+.+.+...... .+.++... .+...++..|++..
T Consensus 25 ~gkpll~~~l~~l~~---------~~~~~~ivVv~~~~~---~~~~~~~~~~~~--~~~~~~~~--~~~~~sl~~~l~~~ 88 (217)
T TIGR00453 25 GGRPLLEHTLDAFLA---------HPAIDEVVVVVSPED---QEFFQKYLVARA--VPKIVAGG--DTRQDSVRNGLKAL 88 (217)
T ss_pred CCeEHHHHHHHHHhc---------CCCCCEEEEEEChHH---HHHHHHHhhcCC--cEEEeCCC--chHHHHHHHHHHhC
Confidence 344566666666654 112346777765321 122222222111 24443322 24567888899887
Q ss_pred -CCCEEEEEcCCCC-CChhhHHHHHHHHHHhC
Q 027065 156 -RGELLLMLDADGA-TKVTDLEKLESQIHAVG 185 (229)
Q Consensus 156 -~~d~v~~lD~D~~-~~~~~l~~l~~~~~~~~ 185 (229)
..|+++++++|.. ++++.+.++++.+.+++
T Consensus 89 ~~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~ 120 (217)
T TIGR00453 89 KDAEWVLVHDAARPFVPKELLDRLLEALRKAG 120 (217)
T ss_pred CCCCEEEEccCccCCCCHHHHHHHHHHHhhCC
Confidence 6799999999996 69999999999887653
No 135
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=91.11 E-value=2.1 Score=38.41 Aligned_cols=98 Identities=14% Similarity=0.164 Sum_probs=62.2
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 027065 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (229)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n~ 150 (229)
++|.-+. ..|..+|+++.+. .--+++++-....+ .++++.... ++.++..+...|.+.++..
T Consensus 29 llpi~gk-pli~~~l~~l~~~----------gi~~ivvv~~~~~~----~i~~~~~~~---~i~~v~~~~~~Gt~~al~~ 90 (481)
T PRK14358 29 LHPVAGR-PMVAWAVKAARDL----------GARKIVVVTGHGAE----QVEAALQGS---GVAFARQEQQLGTGDAFLS 90 (481)
T ss_pred ecEECCe-eHHHHHHHHHHhC----------CCCeEEEEeCCCHH----HHHHHhccC---CcEEecCCCcCCcHHHHHH
Confidence 4455443 6666666666551 23467777553222 233333222 4777776667788888888
Q ss_pred HHHhcC--CCEEEEEcCCC-CCChhhHHHHHHHHHHhCC
Q 027065 151 GMLHSR--GELLLMLDADG-ATKVTDLEKLESQIHAVGR 186 (229)
Q Consensus 151 gl~~a~--~d~v~~lD~D~-~~~~~~l~~l~~~~~~~~~ 186 (229)
|++... .+-++++++|. .+.+..+.++++...+.+.
T Consensus 91 ~~~~l~~~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~ 129 (481)
T PRK14358 91 GASALTEGDADILVLYGDTPLLRPDTLRALVADHRAQGS 129 (481)
T ss_pred HHHHhhCCCCcEEEEeCCeeccCHHHHHHHHHHHHhcCC
Confidence 887753 23367799998 5788899999988766543
No 136
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=91.08 E-value=6.7 Score=31.28 Aligned_cols=89 Identities=12% Similarity=0.196 Sum_probs=52.7
Q ss_pred CCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC--CCCHHHHHHHHHHhc
Q 027065 78 EHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR--NHGKGEAIRKGMLHS 155 (229)
Q Consensus 78 ~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~--~~gk~~a~n~gl~~a 155 (229)
.+-++.+++.+.+. ..--+|+|+-+ .+.. +++.+.++ ++++..++ ..|.+ .+-.++...
T Consensus 27 kPli~~~i~~l~~~---------~~~~~ivv~t~--~~~i----~~~~~~~~---~~v~~~~~~~~~g~~-~~~~a~~~~ 87 (238)
T PRK13368 27 KPMIQHVYERAAQA---------AGVEEVYVATD--DQRI----EDAVEAFG---GKVVMTSDDHLSGTD-RLAEVMLKI 87 (238)
T ss_pred cCHHHHHHHHHHhc---------CCCCeEEEECC--hHHH----HHHHHHcC---CeEEecCccCCCccH-HHHHHHHhC
Confidence 44555666655551 12346777643 1333 33333333 44444332 23443 455566666
Q ss_pred CCCEEEEEcCCC-CCChhhHHHHHHHHHHhC
Q 027065 156 RGELLLMLDADG-ATKVTDLEKLESQIHAVG 185 (229)
Q Consensus 156 ~~d~v~~lD~D~-~~~~~~l~~l~~~~~~~~ 185 (229)
..|.++++++|. .+.++.+.++++.+.+.+
T Consensus 88 ~~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~ 118 (238)
T PRK13368 88 EADIYINVQGDEPMIRPRDIDTLIQPMLDDP 118 (238)
T ss_pred CCCEEEEEcCCcCcCCHHHHHHHHHHHHHCC
Confidence 668999999999 578999999999886554
No 137
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=91.06 E-value=4.9 Score=33.20 Aligned_cols=98 Identities=12% Similarity=0.184 Sum_probs=65.7
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHH---cCCCcEEEEEcCCCCCHHHH
Q 027065 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK---YTVDNVRIILLGRNHGKGEA 147 (229)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~---~~~~~i~vi~~~~~~gk~~a 147 (229)
++|.|+.+ -+.-+|+.+.. ..--+|+||..-.+ ....+++... +. .++++...++..|.+.|
T Consensus 25 LlpV~~KP-mi~y~l~~L~~----------aGI~dI~II~~~~~---~~~~~~llGdgs~~g-v~itY~~Q~~p~GlA~A 89 (286)
T COG1209 25 LLPVYDKP-MIYYPLETLML----------AGIRDILIVVGPED---KPTFKELLGDGSDFG-VDITYAVQPEPDGLAHA 89 (286)
T ss_pred cceecCcc-hhHhHHHHHHH----------cCCceEEEEecCCc---hhhhhhhhcCccccC-cceEEEecCCCCcHHHH
Confidence 68888864 56666777666 22457777754222 2223333222 22 47999999999999999
Q ss_pred HHHHHHhcC-CCEEEEEcCCCCCChhhHHHHHHHHHHhC
Q 027065 148 IRKGMLHSR-GELLLMLDADGATKVTDLEKLESQIHAVG 185 (229)
Q Consensus 148 ~n~gl~~a~-~d~v~~lD~D~~~~~~~l~~l~~~~~~~~ 185 (229)
.-.|-.... .++++++.+... .. -+.+++..+++..
T Consensus 90 v~~a~~fv~~~~f~l~LGDNi~-~~-~l~~~~~~~~~~~ 126 (286)
T COG1209 90 VLIAEDFVGDDDFVLYLGDNIF-QD-GLSELLEHFAEEG 126 (286)
T ss_pred HHHHHhhcCCCceEEEecCcee-cc-ChHHHHHHHhccC
Confidence 999999998 567776655544 44 7888888887643
No 138
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=90.86 E-value=2 Score=37.96 Aligned_cols=100 Identities=13% Similarity=0.103 Sum_probs=60.5
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 027065 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (229)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n~ 150 (229)
++|..+. ..++.+++.+.+ ..--+++++-....+.. +++...+. ..+.++...+..|...++..
T Consensus 27 ll~v~gk-pli~~~l~~l~~----------~gi~~ivvv~~~~~~~i----~~~~~~~~-~~~~~~~~~~~~G~~~sl~~ 90 (446)
T PRK14353 27 LHPVAGR-PMLAHVLAAAAS----------LGPSRVAVVVGPGAEAV----AAAAAKIA-PDAEIFVQKERLGTAHAVLA 90 (446)
T ss_pred cCEECCc-hHHHHHHHHHHh----------CCCCcEEEEECCCHHHH----HHHhhccC-CCceEEEcCCCCCcHHHHHH
Confidence 4455453 566666666655 11246666654332222 33333222 13444444556788888888
Q ss_pred HHHhcC--CCEEEEEcCCC-CCChhhHHHHHHHHHHhCC
Q 027065 151 GMLHSR--GELLLMLDADG-ATKVTDLEKLESQIHAVGR 186 (229)
Q Consensus 151 gl~~a~--~d~v~~lD~D~-~~~~~~l~~l~~~~~~~~~ 186 (229)
+++... .+.++++++|. .++++.++.+++..++..+
T Consensus 91 a~~~l~~~~~~~lv~~~D~P~i~~~~l~~l~~~~~~~~~ 129 (446)
T PRK14353 91 AREALAGGYGDVLVLYGDTPLITAETLARLRERLADGAD 129 (446)
T ss_pred HHHHHhccCCCEEEEeCCcccCCHHHHHHHHHhHhcCCc
Confidence 887653 57788899998 6799999999986654433
No 139
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=90.53 E-value=4.2 Score=36.49 Aligned_cols=99 Identities=13% Similarity=0.125 Sum_probs=61.7
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 027065 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (229)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n~ 150 (229)
++|..+. ..|+.+|+++.+. ..-+++++-....+.. ++...... ..+.++..+...|.+.++-.
T Consensus 26 llpi~gk-pli~~~l~~l~~~----------g~~~iivvv~~~~~~i----~~~~~~~~-~~~~~~~~~~~~Gt~~si~~ 89 (482)
T PRK14352 26 LHTLAGR-SMLGHVLHAAAGL----------APQHLVVVVGHDRERV----APAVAELA-PEVDIAVQDEQPGTGHAVQC 89 (482)
T ss_pred eceeCCc-cHHHHHHHHHHhc----------CCCcEEEEECCCHHHH----HHHhhccC-CccEEEeCCCCCCcHHHHHH
Confidence 4555553 4666666666651 1236666654322222 22222221 13555555566788888988
Q ss_pred HHHhcC---CCEEEEEcCCC-CCChhhHHHHHHHHHHhC
Q 027065 151 GMLHSR---GELLLMLDADG-ATKVTDLEKLESQIHAVG 185 (229)
Q Consensus 151 gl~~a~---~d~v~~lD~D~-~~~~~~l~~l~~~~~~~~ 185 (229)
|++... .+.++++++|. .+.+..+.++++...+.+
T Consensus 90 al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~ 128 (482)
T PRK14352 90 ALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAEG 128 (482)
T ss_pred HHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcC
Confidence 888764 37899999998 578999999999876544
No 140
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=90.08 E-value=3.1 Score=36.87 Aligned_cols=95 Identities=9% Similarity=0.064 Sum_probs=60.7
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 027065 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (229)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n~ 150 (229)
++|..+. ..|+.+|+++.+. .-.+++++-....+ .++++... .+.++..++..|.+.++..
T Consensus 24 ll~i~Gk-pli~~~l~~l~~~----------gi~~iivvv~~~~~----~i~~~~~~----~~~~~~~~~~~g~~~al~~ 84 (458)
T PRK14354 24 LHKVCGK-PMVEHVVDSVKKA----------GIDKIVTVVGHGAE----EVKEVLGD----RSEFALQEEQLGTGHAVMQ 84 (458)
T ss_pred hCEeCCc-cHHHHHHHHHHhC----------CCCeEEEEeCCCHH----HHHHHhcC----CcEEEEcCCCCCHHHHHHH
Confidence 4455554 6677777776651 12356655442222 22333221 2455555566788888888
Q ss_pred HHHhcC--CCEEEEEcCCC-CCChhhHHHHHHHHHHh
Q 027065 151 GMLHSR--GELLLMLDADG-ATKVTDLEKLESQIHAV 184 (229)
Q Consensus 151 gl~~a~--~d~v~~lD~D~-~~~~~~l~~l~~~~~~~ 184 (229)
+++... .+.++++++|. .+.++.+.++++..++.
T Consensus 85 a~~~l~~~~d~vlv~~~D~p~i~~~~l~~li~~~~~~ 121 (458)
T PRK14354 85 AEEFLADKEGTTLVICGDTPLITAETLKNLIDFHEEH 121 (458)
T ss_pred HHHHhcccCCeEEEEECCccccCHHHHHHHHHHHHhc
Confidence 888764 47899999998 57899999999887653
No 141
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=89.93 E-value=5.8 Score=31.71 Aligned_cols=44 Identities=7% Similarity=0.027 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHhc----CCCEEEEEcCCCCC-ChhhHHHHHHHHHHh
Q 027065 141 NHGKGEAIRKGMLHS----RGELLLMLDADGAT-KVTDLEKLESQIHAV 184 (229)
Q Consensus 141 ~~gk~~a~n~gl~~a----~~d~v~~lD~D~~~-~~~~l~~l~~~~~~~ 184 (229)
..|...++..|++.. ..|+|+++++|..+ .++.+.++++.+.++
T Consensus 75 ~~~~~~si~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~ 123 (222)
T TIGR03584 75 FTGTAPVVKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQP 123 (222)
T ss_pred CCCchHHHHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhC
Confidence 456777888888764 36999999999987 889999999999864
No 142
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=89.68 E-value=2.1 Score=37.92 Aligned_cols=89 Identities=13% Similarity=0.157 Sum_probs=56.8
Q ss_pred CCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHhcC
Q 027065 77 EEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSR 156 (229)
Q Consensus 77 e~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n~gl~~a~ 156 (229)
....++.+++++.. ...-+++++-....+ .++++... ..++++..+...|.+.++..+++...
T Consensus 32 gkpli~~~l~~l~~----------~~~~~iivv~~~~~~----~i~~~~~~---~~~~~v~~~~~~Gt~~al~~a~~~l~ 94 (456)
T PRK14356 32 GEPMLRFVYRALRP----------LFGDNVWTVVGHRAD----MVRAAFPD---EDARFVLQEQQLGTGHALQCAWPSLT 94 (456)
T ss_pred CCcHHHHHHHHHHh----------cCCCcEEEEECCCHH----HHHHhccc---cCceEEEcCCCCCcHHHHHHHHHHHh
Confidence 34556666665544 112367666543222 22332222 14677776666788888888877653
Q ss_pred ---CCEEEEEcCCC-CCChhhHHHHHHHHH
Q 027065 157 ---GELLLMLDADG-ATKVTDLEKLESQIH 182 (229)
Q Consensus 157 ---~d~v~~lD~D~-~~~~~~l~~l~~~~~ 182 (229)
.++++++++|. .++++.++.+++...
T Consensus 95 ~~~~d~vlv~~gD~P~i~~~~i~~li~~~~ 124 (456)
T PRK14356 95 AAGLDRVLVVNGDTPLVTTDTIDDFLKEAA 124 (456)
T ss_pred hcCCCcEEEEeCCcccCCHHHHHHHHHHHh
Confidence 58999999999 578999999998765
No 143
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=89.67 E-value=6.6 Score=31.49 Aligned_cols=89 Identities=7% Similarity=0.131 Sum_probs=50.8
Q ss_pred CCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEc--CCCCCHHHHHHHHHH
Q 027065 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILL--GRNHGKGEAIRKGML 153 (229)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~--~~~~gk~~a~n~gl~ 153 (229)
+...-++.+++.+... ..-+|+|+.+ .+.. .++...+. ++++.. +...|.+.... ++.
T Consensus 25 ~Gkpll~~~l~~l~~~----------~i~~ivvv~~--~~~i----~~~~~~~~---~~v~~~~~~~~~gt~~~~~-~~~ 84 (245)
T PRK05450 25 GGKPMIVRVYERASKA----------GADRVVVATD--DERI----ADAVEAFG---GEVVMTSPDHPSGTDRIAE-AAA 84 (245)
T ss_pred CCcCHHHHHHHHHHhc----------CCCeEEEECC--cHHH----HHHHHHcC---CEEEECCCcCCCchHHHHH-HHH
Confidence 3345666666666551 2346666653 2222 23333332 444443 22335443332 333
Q ss_pred hc---CCCEEEEEcCCC-CCChhhHHHHHHHHHHh
Q 027065 154 HS---RGELLLMLDADG-ATKVTDLEKLESQIHAV 184 (229)
Q Consensus 154 ~a---~~d~v~~lD~D~-~~~~~~l~~l~~~~~~~ 184 (229)
.. ..+.++++++|. .++++.+.++++.....
T Consensus 85 ~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~ 119 (245)
T PRK05450 85 KLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANP 119 (245)
T ss_pred hcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcC
Confidence 22 458899999999 67999999999988654
No 144
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=89.61 E-value=8.6 Score=30.75 Aligned_cols=98 Identities=12% Similarity=0.123 Sum_probs=57.5
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHH---cCCCcEEEEEcCCCCCHHHH
Q 027065 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK---YTVDNVRIILLGRNHGKGEA 147 (229)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~---~~~~~i~vi~~~~~~gk~~a 147 (229)
.+|.- ....|..+|+++.+ ..--+|++|..... .+.++++... +. -.+.+...++..|.+.+
T Consensus 25 llpv~-~~pli~~~l~~l~~----------~gi~~i~vv~~~~~---~~~~~~~l~~~~~~~-~~i~~~~~~~~~G~~~a 89 (240)
T cd02538 25 LLPVY-DKPMIYYPLSTLML----------AGIREILIISTPED---LPLFKELLGDGSDLG-IRITYAVQPKPGGLAQA 89 (240)
T ss_pred eeEEC-CEEhHHHHHHHHHH----------CCCCEEEEEeCcch---HHHHHHHHhcccccC-ceEEEeeCCCCCCHHHH
Confidence 34444 34566777776665 12346777654322 1222222221 21 13444444456789999
Q ss_pred HHHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHH
Q 027065 148 IRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHA 183 (229)
Q Consensus 148 ~n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~ 183 (229)
+..+......+-++++.+|..+.+..+.++++...+
T Consensus 90 l~~a~~~~~~~~~lv~~gD~~~~~~~~~~~~~~~~~ 125 (240)
T cd02538 90 FIIGEEFIGDDPVCLILGDNIFYGQGLSPILQRAAA 125 (240)
T ss_pred HHHHHHhcCCCCEEEEECCEEEccHHHHHHHHHHHh
Confidence 999988876665667788877766678888876643
No 145
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=89.61 E-value=4.1 Score=31.70 Aligned_cols=103 Identities=16% Similarity=0.090 Sum_probs=63.9
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcC----CCcEEEEEc------CC
Q 027065 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYT----VDNVRIILL------GR 140 (229)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~----~~~i~vi~~------~~ 140 (229)
++|..|..+.+..+++.+.. ..--+++|+-....+...+.+.+. ..+. ..+++++.. ++
T Consensus 23 llpv~g~~pli~~~l~~l~~----------~gi~~iivv~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (200)
T cd02508 23 AVPFGGRYRLIDFPLSNMVN----------SGIRNVGVLTQYKSRSLNDHLGSG-KEWDLDRKNGGLFILPPQQRKGGDW 91 (200)
T ss_pred eeEECCeeeeHHHHHHHHHH----------CCCCEEEEEeCCChHHHHHHHhCC-CcccCCCCCCCEEEeCcccCCCCCc
Confidence 67777764567777777766 123578877765443333333211 0111 112555542 34
Q ss_pred CCCHHHHHHHHHHhcC---CCEEEEEcCCCCCChhhHHHHHHHHHHhC
Q 027065 141 NHGKGEAIRKGMLHSR---GELLLMLDADGATKVTDLEKLESQIHAVG 185 (229)
Q Consensus 141 ~~gk~~a~n~gl~~a~---~d~v~~lD~D~~~~~~~l~~l~~~~~~~~ 185 (229)
..|.+.++..|..... .+.++++-+|. +.+..+.++++...+.+
T Consensus 92 ~~Gta~al~~a~~~i~~~~~~~~lv~~gD~-v~~~~~~~~l~~~~~~~ 138 (200)
T cd02508 92 YRGTADAIYQNLDYIERSDPEYVLILSGDH-IYNMDYREMLDFHIESG 138 (200)
T ss_pred ccCcHHHHHHHHHHHHhCCCCEEEEecCCE-EEecCHHHHHHHHHHcC
Confidence 5788999999988763 57888999998 55667888888776544
No 146
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=89.24 E-value=7.7 Score=33.48 Aligned_cols=98 Identities=12% Similarity=0.123 Sum_probs=68.9
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHc--CCCcEEEEEcCCCCCHHHHH
Q 027065 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKY--TVDNVRIILLGRNHGKGEAI 148 (229)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~--~~~~i~vi~~~~~~gk~~a~ 148 (229)
++|.-|.+ -++-.|+++.. ..-.|++++-. ...+.++++.... ...++.++...+..|-++++
T Consensus 26 llpI~gkP-ii~~~l~~L~~----------~Gv~eivi~~~----y~~~~i~~~~~d~~~~~~~I~y~~e~~~lGTag~l 90 (358)
T COG1208 26 LLPIAGKP-LIEYVLEALAA----------AGVEEIVLVVG----YLGEQIEEYFGDGEGLGVRITYVVEKEPLGTAGAL 90 (358)
T ss_pred cceeCCcc-HHHHHHHHHHH----------CCCcEEEEEec----cchHHHHHHHhcccccCCceEEEecCCcCccHHHH
Confidence 56666653 45555555544 23467777733 2333344443331 12468888888889999999
Q ss_pred HHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHh
Q 027065 149 RKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAV 184 (229)
Q Consensus 149 n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~ 184 (229)
..+.+...++-++++.+|...+-+ +..+++..++.
T Consensus 91 ~~a~~~l~~~~f~v~~GDv~~~~d-l~~l~~~~~~~ 125 (358)
T COG1208 91 KNALDLLGGDDFLVLNGDVLTDLD-LSELLEFHKKK 125 (358)
T ss_pred HHHHHhcCCCcEEEEECCeeeccC-HHHHHHHHHhc
Confidence 999999988889999999999998 99999988776
No 147
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=89.01 E-value=9.5 Score=29.90 Aligned_cols=43 Identities=7% Similarity=0.132 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHHhcC-----CCEEEEEcCCCCC-ChhhHHHHHHHHHHh
Q 027065 142 HGKGEAIRKGMLHSR-----GELLLMLDADGAT-KVTDLEKLESQIHAV 184 (229)
Q Consensus 142 ~gk~~a~n~gl~~a~-----~d~v~~lD~D~~~-~~~~l~~l~~~~~~~ 184 (229)
.|...++..|++... .+.++++++|..+ +++.+.++++.+.+.
T Consensus 78 ~~~~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~ 126 (223)
T cd02513 78 ASSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSE 126 (223)
T ss_pred CCcHHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhC
Confidence 356777778887543 3899999999984 899999999998764
No 148
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=88.93 E-value=5.7 Score=32.38 Aligned_cols=104 Identities=13% Similarity=0.145 Sum_probs=63.5
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHH------HHHc-------------CCC
Q 027065 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDF------VRKY-------------TVD 131 (229)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~------~~~~-------------~~~ 131 (229)
.+|..+. ..|...|+++.+. .--+|+|+-....+...+.+... ..+. +..
T Consensus 25 llpv~gk-pli~~~l~~l~~~----------gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (267)
T cd02541 25 MLPIVDK-PVIQYIVEEAVAA----------GIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKGKTDLLEEVRIISDLA 93 (267)
T ss_pred eeEECCE-EHHHHHHHHHHHC----------CCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhcccHHHhhhhhcccCCc
Confidence 4566555 6777777777661 12367776664433333333110 0000 012
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCEEEEEcCCCCCChh--hHHHHHHHHHHhC
Q 027065 132 NVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVT--DLEKLESQIHAVG 185 (229)
Q Consensus 132 ~i~vi~~~~~~gk~~a~n~gl~~a~~d~v~~lD~D~~~~~~--~l~~l~~~~~~~~ 185 (229)
.+.++..+...|.+.++..|......+-++++.+|..+... .+.++++...+..
T Consensus 94 ~i~~~~~~~~~Gt~~al~~~~~~i~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~ 149 (267)
T cd02541 94 NIHYVRQKEPLGLGHAVLCAKPFIGDEPFAVLLGDDLIDSKEPCLKQLIEAYEKTG 149 (267)
T ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCceEEEECCeEEeCCchHHHHHHHHHHHhC
Confidence 45566656668999999999988866667777888877654 5899998776543
No 149
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=88.77 E-value=9.4 Score=30.91 Aligned_cols=54 Identities=13% Similarity=0.110 Sum_probs=38.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCEEEEEcCCCCCChh--hHHHHHHHHHHhCC
Q 027065 133 VRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVT--DLEKLESQIHAVGR 186 (229)
Q Consensus 133 i~vi~~~~~~gk~~a~n~gl~~a~~d~v~~lD~D~~~~~~--~l~~l~~~~~~~~~ 186 (229)
+.+.......|.+.++..+......+-++++-+|..+... .+.++++...+.+.
T Consensus 95 i~~~~~~~~~G~~~al~~~~~~~~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~ 150 (260)
T TIGR01099 95 IFYVRQKEQKGLGHAVLCAEPFVGDEPFAVILGDDIVVSEEPALKQMIDLYEKYGC 150 (260)
T ss_pred EEEEecCCCCCHHHHHHHHHHhhCCCCEEEEeccceecCCcHHHHHHHHHHHHhCC
Confidence 4445455568899999999887755557777788777554 78999987765443
No 150
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=88.73 E-value=5.8 Score=31.46 Aligned_cols=95 Identities=15% Similarity=0.149 Sum_probs=54.7
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEc-CCCCCHHHHHH
Q 027065 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILL-GRNHGKGEAIR 149 (229)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~-~~~~gk~~a~n 149 (229)
++|..+. .-++.+|+++.++ .--+++++-. ......+.+++...... .++.++.. +...|.+.++.
T Consensus 23 ll~i~g~-pli~~~l~~l~~~----------g~~~ivvv~~-~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~g~~~~l~ 89 (231)
T cd04183 23 LIEVDGK-PMIEWVIESLAKI----------FDSRFIFICR-DEHNTKFHLDESLKLLA-PNATVVELDGETLGAACTVL 89 (231)
T ss_pred eeEECCE-EHHHHHHHhhhcc----------CCceEEEEEC-hHHhhhhhHHHHHHHhC-CCCEEEEeCCCCCcHHHHHH
Confidence 4565554 5666767666651 1235565553 22222222332222211 14544433 35678899999
Q ss_pred HHHHhcC-CCEEEEEcCCCCCChhhHHHHH
Q 027065 150 KGMLHSR-GELLLMLDADGATKVTDLEKLE 178 (229)
Q Consensus 150 ~gl~~a~-~d~v~~lD~D~~~~~~~l~~l~ 178 (229)
.|..... .+.++++.+|.....+....+.
T Consensus 90 ~a~~~l~~~~~~lv~~~D~i~~~~~~~~~~ 119 (231)
T cd04183 90 LAADLIDNDDPLLIFNCDQIVESDLLAFLA 119 (231)
T ss_pred HHHhhcCCCCCEEEEecceeeccCHHHHHH
Confidence 9988774 4778889999998877554443
No 151
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=88.36 E-value=4.7 Score=31.30 Aligned_cols=79 Identities=13% Similarity=0.103 Sum_probs=51.8
Q ss_pred CCceEEEEEECCCC--cc-hHHHHHHHHHHcCCCcEEEEEcCCC---CC--HHHHHHHHHHhcC-CCEEEEEcCCCCCCh
Q 027065 101 SFTYEVLIIDDGSS--DG-TKRVAFDFVRKYTVDNVRIILLGRN---HG--KGEAIRKGMLHSR-GELLLMLDADGATKV 171 (229)
Q Consensus 101 ~~~~eiivvdd~s~--d~-t~~~~~~~~~~~~~~~i~vi~~~~~---~g--k~~a~n~gl~~a~-~d~v~~lD~D~~~~~ 171 (229)
....+++++-..+. +. ..+.+++=.+++. .+-.....+. .. ...+++.+.+.+. .+|++.+|+|..+.+
T Consensus 18 ~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~--Dil~~d~~D~y~nlt~K~~~~~~w~~~~c~~~~~v~k~DDD~~vn~ 95 (195)
T PF01762_consen 18 GVRVKVVFVVGESPNSDSDLQEALQEEAEKYG--DILQGDFVDSYRNLTLKTLAGLKWASKHCPNAKYVLKVDDDVFVNP 95 (195)
T ss_pred CCcEEEEEEEecCCCCcHHHHHHhhhhhhhcC--ceEeeecccccchhhHHHHHHHHHHHhhCCchhheeecCcEEEEeh
Confidence 35778888776666 33 2333444445555 4544444332 22 2255666777776 799999999999999
Q ss_pred hhHHHHHHHH
Q 027065 172 TDLEKLESQI 181 (229)
Q Consensus 172 ~~l~~l~~~~ 181 (229)
+.|...+...
T Consensus 96 ~~l~~~L~~~ 105 (195)
T PF01762_consen 96 DRLVSFLKSL 105 (195)
T ss_pred HHhhhhhhhc
Confidence 9888887777
No 152
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=87.53 E-value=5.9 Score=31.08 Aligned_cols=98 Identities=12% Similarity=0.017 Sum_probs=54.7
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHc--CCCcEEEEEcCCCCCHHHHH
Q 027065 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKY--TVDNVRIILLGRNHGKGEAI 148 (229)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~--~~~~i~vi~~~~~~gk~~a~ 148 (229)
++|..|. ..+..+|+++.+. .--+++|+-+.. .+.++++.... ....+.++..+...|.++++
T Consensus 23 ll~~~g~-pli~~~l~~l~~~----------~~~~iivv~~~~----~~~i~~~~~~~~~~~~~i~~~~~~~~~g~~~~l 87 (220)
T cd06426 23 MLKVGGK-PILETIIDRFIAQ----------GFRNFYISVNYL----AEMIEDYFGDGSKFGVNISYVREDKPLGTAGAL 87 (220)
T ss_pred cCeECCc-chHHHHHHHHHHC----------CCcEEEEECccC----HHHHHHHHCCccccCccEEEEECCCCCcchHHH
Confidence 4555565 5677777777661 123666665432 22233332221 11135555544456767777
Q ss_pred HHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHhC
Q 027065 149 RKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVG 185 (229)
Q Consensus 149 n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~ 185 (229)
..+.+.. .+.++++.+|... ...+..+++.+.+..
T Consensus 88 ~~~~~~~-~~~~lv~~~D~i~-~~~~~~l~~~~~~~~ 122 (220)
T cd06426 88 SLLPEKP-TDPFLVMNGDILT-NLNYEHLLDFHKENN 122 (220)
T ss_pred HHHHhhC-CCCEEEEcCCEee-ccCHHHHHHHHHhcC
Confidence 5444433 6678888899755 456788888776544
No 153
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=87.49 E-value=11 Score=29.02 Aligned_cols=92 Identities=10% Similarity=0.049 Sum_probs=58.8
Q ss_pred CCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHhc-
Q 027065 77 EEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS- 155 (229)
Q Consensus 77 e~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n~gl~~a- 155 (229)
...-+...++++.. .. --+|+++-+..++.+.+.+++. ...+ ......|...++..|++..
T Consensus 26 GkplI~~vi~~l~~---------~~-i~~I~Vv~~~~~~~~~~~l~~~-------~~~~-~~~~g~G~~~~l~~al~~~~ 87 (183)
T TIGR00454 26 GRCLIDHVLSPLLK---------SK-VNNIIIATSPHTPKTEEYINSA-------YKDY-KNASGKGYIEDLNECIGELY 87 (183)
T ss_pred CEEHHHHHHHHHHh---------CC-CCEEEEEeCCCHHHHHHHHhhc-------CcEE-EecCCCCHHHHHHHHhhccc
Confidence 34566666666654 11 3466666554444454444321 1222 3345678888999999853
Q ss_pred CCCEEEEEcCCCC-CChhhHHHHHHHHHHhCC
Q 027065 156 RGELLLMLDADGA-TKVTDLEKLESQIHAVGR 186 (229)
Q Consensus 156 ~~d~v~~lD~D~~-~~~~~l~~l~~~~~~~~~ 186 (229)
..+.++++-+|.. +.++.+..+++.+...+.
T Consensus 88 ~~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~ 119 (183)
T TIGR00454 88 FSEPFLVVSSDLINLRSKIIDSIVDYYYCIKA 119 (183)
T ss_pred CCCCEEEEeCCcCcCCHHHHHHHHHHHHhcCC
Confidence 3577899999987 599999999998866543
No 154
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=87.35 E-value=3.8 Score=32.07 Aligned_cols=54 Identities=20% Similarity=0.174 Sum_probs=46.1
Q ss_pred cEEEEEcCCCC-CHHHHHHHHHHhcCCCEEEEEcCCCCC-ChhhHHHHHHHHHHhC
Q 027065 132 NVRIILLGRNH-GKGEAIRKGMLHSRGELLLMLDADGAT-KVTDLEKLESQIHAVG 185 (229)
Q Consensus 132 ~i~vi~~~~~~-gk~~a~n~gl~~a~~d~v~~lD~D~~~-~~~~l~~l~~~~~~~~ 185 (229)
.+.++...... |.-.++-.|++...+++++++-+|..+ .++.++.+...+...+
T Consensus 61 g~~vv~D~~~~~GPL~Gi~~al~~~~~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~ 116 (192)
T COG0746 61 GLPVVPDELPGFGPLAGILAALRHFGTEWVLVLPCDMPFIPPELVERLLSAFKQTG 116 (192)
T ss_pred CCceeecCCCCCCCHHHHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence 46777766555 999999999999999999999999986 8888899988887655
No 155
>PLN02893 Cellulose synthase-like protein
Probab=87.33 E-value=3 Score=39.31 Aligned_cols=56 Identities=16% Similarity=0.151 Sum_probs=43.1
Q ss_pred CCCceEEEEEee---cCCCC-ChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHH
Q 027065 63 PAEKYISLIIPA---FNEEH-RLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDF 124 (229)
Q Consensus 63 ~~~p~vsviip~---~ne~~-~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~ 124 (229)
...|.|.|.|++ ++|+. .+..++-|+++. ++|.+++-+++.|||.+.-|.+.+.|.
T Consensus 98 ~~lP~vDvfv~TaDP~~Epp~~~~ntvLSilA~------dyp~~kls~YvSDDGgs~lt~~al~Ea 157 (734)
T PLN02893 98 SDYPGLDVFICTADPYKEPPMGVVNTALSVMAY------DYPTEKLSVYVSDDGGSKLTLFAFMEA 157 (734)
T ss_pred ccCCcceeeeccCCcccCchHHHHHHHHHHHhh------ccCccceEEEEecCCccHHHHHHHHHH
Confidence 457899999999 56663 455666666662 467789999999999999988777654
No 156
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=87.15 E-value=8.1 Score=34.17 Aligned_cols=94 Identities=15% Similarity=0.135 Sum_probs=62.5
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 027065 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (229)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n~ 150 (229)
++|..+. +-++.+|+++.+. .-+++|+-+... +.++++... .+.++..++..|.+.++..
T Consensus 22 l~~v~gk-pli~~~l~~l~~~-----------~~~i~vv~~~~~----~~i~~~~~~----~~~~~~~~~~~g~~~ai~~ 81 (448)
T PRK14357 22 LHKISGK-PMINWVIDTAKKV-----------AQKVGVVLGHEA----ELVKKLLPE----WVKIFLQEEQLGTAHAVMC 81 (448)
T ss_pred eeEECCe-eHHHHHHHHHHhc-----------CCcEEEEeCCCH----HHHHHhccc----ccEEEecCCCCChHHHHHH
Confidence 5566554 6677777766661 136666654221 333333221 3556655567788999999
Q ss_pred HHHhcC-CCEEEEEcCCC-CCChhhHHHHHHHHHHh
Q 027065 151 GMLHSR-GELLLMLDADG-ATKVTDLEKLESQIHAV 184 (229)
Q Consensus 151 gl~~a~-~d~v~~lD~D~-~~~~~~l~~l~~~~~~~ 184 (229)
+++... .+.++++++|. .+....+.++++.+.+.
T Consensus 82 a~~~l~~~~~vlv~~gD~p~i~~~~i~~l~~~~~~~ 117 (448)
T PRK14357 82 ARDFIEPGDDLLILYGDVPLISENTLKRLIEEHNRK 117 (448)
T ss_pred HHHhcCcCCeEEEEeCCcccCCHHHHHHHHHHHHhc
Confidence 988774 58999999998 46888899999887654
No 157
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=87.10 E-value=9.6 Score=30.84 Aligned_cols=43 Identities=16% Similarity=0.140 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHhcCC-CEEEEEcCCCCCChhhHHHHHHHHHHh
Q 027065 141 NHGKGEAIRKGMLHSRG-ELLLMLDADGATKVTDLEKLESQIHAV 184 (229)
Q Consensus 141 ~~gk~~a~n~gl~~a~~-d~v~~lD~D~~~~~~~l~~l~~~~~~~ 184 (229)
..|.++++-.|.+...+ +.++++++|.....+. ..+++.....
T Consensus 101 ~~~t~~al~~a~~~~~~~~~~lv~~gD~i~~~dl-~~ll~~h~~~ 144 (253)
T cd02524 101 NTMTGGRLKRVRRYLGDDETFMLTYGDGVSDVNI-NALIEFHRSH 144 (253)
T ss_pred ccccHHHHHHHHHhcCCCCeEEEEcCCEEECCCH-HHHHHHHHHc
Confidence 35578888888888865 8899999999887666 8888765443
No 158
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=86.99 E-value=6.4 Score=32.74 Aligned_cols=105 Identities=10% Similarity=0.065 Sum_probs=63.7
Q ss_pred eEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC---C--
Q 027065 67 YISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR---N-- 141 (229)
Q Consensus 67 ~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~---~-- 141 (229)
.++||....|-...+..++.|++. ....++++.|++|+.+++..+.+.+....++ ..+.++..+. .
T Consensus 2 ~~~iv~~~~~y~~~~~~~i~Sil~--------n~~~~~~fhii~d~~s~~~~~~l~~~~~~~~-~~i~f~~i~~~~~~~~ 72 (280)
T cd06431 2 HVAIVCAGYNASRDVVTLVKSVLF--------YRRNPLHFHLITDEIARRILATLFQTWMVPA-VEVSFYNAEELKSRVS 72 (280)
T ss_pred EEEEEEccCCcHHHHHHHHHHHHH--------cCCCCEEEEEEECCcCHHHHHHHHHhccccC-cEEEEEEhHHhhhhhc
Confidence 377777775555677888888877 3345799999999887777666655443332 2455555421 1
Q ss_pred ----CCHHHH---HHHHHH-hc--CCCEEEEEcCCCCCChhhHHHHHHHH
Q 027065 142 ----HGKGEA---IRKGML-HS--RGELLLMLDADGATKVTDLEKLESQI 181 (229)
Q Consensus 142 ----~gk~~a---~n~gl~-~a--~~d~v~~lD~D~~~~~~~l~~l~~~~ 181 (229)
...+.. ....+. .- .-+=|+.+|+|..+..+ +.++.+.+
T Consensus 73 ~~~~~~~s~~y~y~RL~ip~llp~~~dkvLYLD~Diiv~~d-i~eL~~~~ 121 (280)
T cd06431 73 WIPNKHYSGIYGLMKLVLTEALPSDLEKVIVLDTDITFATD-IAELWKIF 121 (280)
T ss_pred cCcccchhhHHHHHHHHHHHhchhhcCEEEEEcCCEEEcCC-HHHHHHHh
Confidence 011111 122222 22 36889999999998644 66666654
No 159
>PLN02436 cellulose synthase A
Probab=86.48 E-value=3.4 Score=40.39 Aligned_cols=56 Identities=11% Similarity=0.044 Sum_probs=41.6
Q ss_pred CCCceEEEEEeecC---CC-CChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHH
Q 027065 63 PAEKYISLIIPAFN---EE-HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDF 124 (229)
Q Consensus 63 ~~~p~vsviip~~n---e~-~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~ 124 (229)
...|.|.|.|++=. |. -.+..|+-|+++ .++|..++-++|.|||...-|.+.+.+.
T Consensus 362 s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA------~DYP~eKlscYvSDDGgS~LTf~AL~EA 421 (1094)
T PLN02436 362 SELASVDVFVSTVDPMKEPPLITANTVLSILA------VDYPVDKVACYVSDDGAAMLTFEALSET 421 (1094)
T ss_pred ccCCceeeEeccCCcccCcchHHHHHHHHHHh------hcccccceEEEEecCCchHHHHHHHHHH
Confidence 45888999999864 33 245566666666 2467789999999999998888776544
No 160
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=86.41 E-value=9.3 Score=33.29 Aligned_cols=93 Identities=11% Similarity=0.096 Sum_probs=57.4
Q ss_pred CCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHhc
Q 027065 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS 155 (229)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n~gl~~a 155 (229)
+....++.+++.+.+. ..--+|+||-+... .+..+.+...+. .++++.. ..+...++..|++..
T Consensus 31 ~GkPll~~tl~~l~~~---------~~i~~IvVVv~~~~---~~~~~~~~~~~~--~v~~v~g--G~~r~~SV~~gL~~l 94 (378)
T PRK09382 31 GGKPLWLHVLENLSSA---------PAFKEIVVVIHPDD---IAYMKKALPEIK--FVTLVTG--GATRQESVRNALEAL 94 (378)
T ss_pred CCeeHHHHHHHHHhcC---------CCCCeEEEEeChHH---HHHHHHhcccCC--eEEEeCC--CchHHHHHHHHHHhc
Confidence 3455666777666651 11236777654222 233333322222 2444332 234667888899888
Q ss_pred CCCEEEEEcCCCC-CChhhHHHHHHHHHHh
Q 027065 156 RGELLLMLDADGA-TKVTDLEKLESQIHAV 184 (229)
Q Consensus 156 ~~d~v~~lD~D~~-~~~~~l~~l~~~~~~~ 184 (229)
..++|++.|+|-. ++++.++++++.+.+.
T Consensus 95 ~~d~VLVhdadrPfv~~e~I~~li~~~~~~ 124 (378)
T PRK09382 95 DSEYVLIHDAARPFVPKELIDRLIEALDKA 124 (378)
T ss_pred CCCeEEEeeccccCCCHHHHHHHHHHhhcC
Confidence 7799999999965 5899999999988754
No 161
>PLN02248 cellulose synthase-like protein
Probab=86.15 E-value=1.1 Score=43.77 Aligned_cols=40 Identities=20% Similarity=0.165 Sum_probs=33.5
Q ss_pred HHHHHHHHHH----hcCCCEEEEEcCCCCCChh-hHHHHHHHHHH
Q 027065 144 KGEAIRKGML----HSRGELLLMLDADGATKVT-DLEKLESQIHA 183 (229)
Q Consensus 144 k~~a~n~gl~----~a~~d~v~~lD~D~~~~~~-~l~~l~~~~~~ 183 (229)
|++|+|..++ .++++||+.+|+|.++.+. .+.+.+=.|.+
T Consensus 603 KAGAMNALlRVSavmTNgPfILNLDCDmYiNns~alr~AMCf~lD 647 (1135)
T PLN02248 603 KAGAMNALVRASAIMSNGPFILNLDCDHYIYNSLAIREGMCFMMD 647 (1135)
T ss_pred ccchhhhHHHhhhhccCCCeEEEeccCcccCCchhHHhcchheec
Confidence 9999988776 4579999999999998555 88888877765
No 162
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=85.99 E-value=3.7 Score=35.51 Aligned_cols=44 Identities=20% Similarity=0.336 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHhcCCCEEEEEcCCCC-CChhhHHHHHHHHHHhC
Q 027065 142 HGKGEAIRKGMLHSRGELLLMLDADGA-TKVTDLEKLESQIHAVG 185 (229)
Q Consensus 142 ~gk~~a~n~gl~~a~~d~v~~lD~D~~-~~~~~l~~l~~~~~~~~ 185 (229)
.|...++..|++....++++++++|.. ++++.++++++.+.+.+
T Consensus 78 ~G~~~si~~gl~~~~~~~vlv~~~D~P~i~~~~i~~L~~~~~~~~ 122 (366)
T PRK14489 78 QGPLSGILAGLEHADSEYLFVVACDTPFLPENLVKRLSKALAIEG 122 (366)
T ss_pred CChHHHHHHHHHhcCCCcEEEeeCCcCCCCHHHHHHHHHHhhccC
Confidence 578888999999988899999999974 69999999999876543
No 163
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=85.86 E-value=4.2 Score=39.71 Aligned_cols=56 Identities=11% Similarity=0.004 Sum_probs=41.5
Q ss_pred CCCceEEEEEeecC---CC-CChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHH
Q 027065 63 PAEKYISLIIPAFN---EE-HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDF 124 (229)
Q Consensus 63 ~~~p~vsviip~~n---e~-~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~ 124 (229)
...|.|.|.|++=. |. -....|+-|+++ .++|..++-++|.|||...-|.+.+.+.
T Consensus 284 ~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA------~DYP~eKlscYvSDDGgS~LTf~AL~EA 343 (1044)
T PLN02915 284 NRLAPVDVFVSTVDPLKEPPIITANTVLSILA------VDYPVDKVSCYVSDDGASMLLFDTLSET 343 (1044)
T ss_pred ccCCceeeEeccCCcccCcchHHHHHHHHHHh------hcccccceeEEEecCCchHhHHHHHHHH
Confidence 35788999999865 33 245566666666 2467789999999999998888776544
No 164
>PLN02400 cellulose synthase
Probab=85.84 E-value=3.5 Score=40.38 Aligned_cols=56 Identities=13% Similarity=0.046 Sum_probs=41.3
Q ss_pred CCCceEEEEEeecC---CC-CChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHH
Q 027065 63 PAEKYISLIIPAFN---EE-HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDF 124 (229)
Q Consensus 63 ~~~p~vsviip~~n---e~-~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~ 124 (229)
...|.|.|.|++=+ |. -.+..|+-|+++ .++|..++-++|.|||...-|.+.+.+.
T Consensus 353 s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA------~DYP~eKlscYvSDDGgS~LTf~Al~Ea 412 (1085)
T PLN02400 353 SQLAPVDVFVSTVDPLKEPPLVTANTVLSILA------VDYPVDKVSCYVSDDGSAMLTFEALSET 412 (1085)
T ss_pred ccCCceeeEeccCCcccCcchHHHHHHHHHHh------hcccccceEEEEecCCchHHHHHHHHHH
Confidence 45788999999865 33 244566666666 3467789999999999998887766543
No 165
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=85.49 E-value=11 Score=32.28 Aligned_cols=101 Identities=12% Similarity=0.176 Sum_probs=59.3
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECC-CCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHH
Q 027065 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDG-SSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR 149 (229)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~-s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n 149 (229)
.+|.-+. ..+..+|+++.+ ..--+++++-.. ..+...+.+.+. ..+. ..+.++..+...|.+.++.
T Consensus 24 l~pv~g~-pli~~~l~~l~~----------~gi~~i~vv~~~~~~~~i~~~~~~~-~~~~-~~~~~~~~~~~~G~~~al~ 90 (353)
T TIGR01208 24 LIPVANK-PILQYAIEDLAE----------AGITDIGIVVGPVTGEEIKEIVGEG-ERFG-AKITYIVQGEPLGLAHAVY 90 (353)
T ss_pred ccEECCE-eHHHHHHHHHHH----------CCCCEEEEEeCCCCHHHHHHHHhcc-cccC-ceEEEEECCCCCCHHHHHH
Confidence 3455455 667777777766 123467666554 322233332210 1111 1355555556789999999
Q ss_pred HHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHhC
Q 027065 150 KGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVG 185 (229)
Q Consensus 150 ~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~ 185 (229)
.|++....+-++++.+|..++ ..+.++++...+..
T Consensus 91 ~a~~~l~~~~~li~~gD~~~~-~~l~~l~~~~~~~~ 125 (353)
T TIGR01208 91 TARDFLGDDDFVVYLGDNLIQ-DGISRFVKSFEEKD 125 (353)
T ss_pred HHHHhcCCCCEEEEECCeecC-ccHHHHHHHHHhcC
Confidence 999877544456677898775 56777887765433
No 166
>PLN02195 cellulose synthase A
Probab=85.30 E-value=3.7 Score=39.77 Aligned_cols=56 Identities=9% Similarity=0.048 Sum_probs=42.1
Q ss_pred CCCceEEEEEeecC---CC-CChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHH
Q 027065 63 PAEKYISLIIPAFN---EE-HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDF 124 (229)
Q Consensus 63 ~~~p~vsviip~~n---e~-~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~ 124 (229)
...|.|.|.|++=+ |+ -....|+-|+++ .++|..++-++|.|||...-|.+.+.+.
T Consensus 249 s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA------~DYP~eKlscYvSDDGgS~LTf~AL~EA 308 (977)
T PLN02195 249 SQLAAVDFFVSTVDPLKEPPLITANTVLSILA------VDYPVDKVSCYVSDDGAAMLSFESLVET 308 (977)
T ss_pred ccCCceeeEeccCCcccCcchHHHHHHHHHHh------hcccccceEEEEecCCchHHHHHHHHHH
Confidence 45889999999865 33 245566666666 2467789999999999999888777654
No 167
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=85.12 E-value=18 Score=29.10 Aligned_cols=89 Identities=7% Similarity=0.125 Sum_probs=51.4
Q ss_pred CCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEc-CCCCCHHHHHHHHHHh
Q 027065 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILL-GRNHGKGEAIRKGMLH 154 (229)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~-~~~~gk~~a~n~gl~~ 154 (229)
+...-+..+++.+.. . .--+|+|+-|. +.. ++....+. ++++.. +...|.......+++.
T Consensus 22 ~GkPli~~~le~~~~---------~-~~d~VvVvt~~--~~i----~~~~~~~g---~~~v~~~~~~~~Gt~r~~~~~~~ 82 (238)
T TIGR00466 22 FGKPMIVHVAENANE---------S-GADRCIVATDD--ESV----AQTCQKFG---IEVCMTSKHHNSGTERLAEVVEK 82 (238)
T ss_pred CCcCHHHHHHHHHHh---------C-CCCeEEEEeCH--HHH----HHHHHHcC---CEEEEeCCCCCChhHHHHHHHHH
Confidence 344566667776554 1 13467777542 222 33333333 455442 2223323333333332
Q ss_pred ---cCCCEEEEEcCCCC-CChhhHHHHHHHHHH
Q 027065 155 ---SRGELLLMLDADGA-TKVTDLEKLESQIHA 183 (229)
Q Consensus 155 ---a~~d~v~~lD~D~~-~~~~~l~~l~~~~~~ 183 (229)
...|+|+++|+|.. ++++.+.++++.+.+
T Consensus 83 l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~ 115 (238)
T TIGR00466 83 LALKDDERIVNLQGDEPFIPKEIIRQVADNLAT 115 (238)
T ss_pred hCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhc
Confidence 24689999999999 599999999999854
No 168
>PLN02248 cellulose synthase-like protein
Probab=85.06 E-value=5.2 Score=39.31 Aligned_cols=56 Identities=14% Similarity=0.045 Sum_probs=42.2
Q ss_pred CCCceEEEEEeecCCC----CChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHH
Q 027065 63 PAEKYISLIIPAFNEE----HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDF 124 (229)
Q Consensus 63 ~~~p~vsviip~~ne~----~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~ 124 (229)
...|.|.|.|++=... -....|+-|+++ .++|..++-++|.|||...-|.+.+.|.
T Consensus 364 s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA------~DYP~eKLacYvSDDGgS~LTf~AL~EA 423 (1135)
T PLN02248 364 SDLPGIDVFVSTADPEKEPPLVTANTILSILA------ADYPVEKLACYLSDDGGALLTFEAMAEA 423 (1135)
T ss_pred ccCCcceeEeecCCCccCcchHHHHHHHHHhc------ccccccceeEEEecCCchHHHHHHHHHH
Confidence 3589999999996533 245566666666 3467789999999999999888777654
No 169
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=84.98 E-value=3.7 Score=40.16 Aligned_cols=56 Identities=11% Similarity=0.051 Sum_probs=41.8
Q ss_pred CCCceEEEEEeecC---CC-CChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHH
Q 027065 63 PAEKYISLIIPAFN---EE-HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDF 124 (229)
Q Consensus 63 ~~~p~vsviip~~n---e~-~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~ 124 (229)
...|.|.|.|++=. |. -.+..|+-|+++ .++|..++-++|.|||...-|.+.+.+.
T Consensus 346 s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA------~DYP~eKlscYvSDDGgS~LTf~AL~EA 405 (1079)
T PLN02638 346 SQLAAVDIFVSTVDPLKEPPLVTANTVLSILA------VDYPVDKVSCYVSDDGAAMLTFEALSET 405 (1079)
T ss_pred ccCCCccEEEeCCCCccCccHHHHHHHHHHHh------hcccccceeEEEecCCchHHHHHHHHHH
Confidence 45788999999965 33 245566666666 2467789999999999999888777654
No 170
>PLN02189 cellulose synthase
Probab=84.92 E-value=4.2 Score=39.68 Aligned_cols=55 Identities=13% Similarity=0.048 Sum_probs=41.4
Q ss_pred CCceEEEEEeecC---CC-CChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHH
Q 027065 64 AEKYISLIIPAFN---EE-HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDF 124 (229)
Q Consensus 64 ~~p~vsviip~~n---e~-~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~ 124 (229)
..|.|.|.|++=+ |. -.+..|+-|+++ .++|..++-++|.|||...-|.+.+.+.
T Consensus 329 ~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA------~DYP~eKlscYvSDDGgS~LTf~AL~EA 387 (1040)
T PLN02189 329 MLSPVDIFVSTVDPLKEPPLVTANTVLSILA------MDYPVDKISCYVSDDGASMLTFEALSET 387 (1040)
T ss_pred cCCceeeEeccCCcccCcchHHHHHHHHHHh------hcccccceeEEEecCCchHHHHHHHHHH
Confidence 4788999999865 33 245566666666 2467789999999999999888777654
No 171
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=84.53 E-value=22 Score=29.80 Aligned_cols=103 Identities=12% Similarity=0.133 Sum_probs=61.8
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHH-------------------HHHH-cCC
Q 027065 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFD-------------------FVRK-YTV 130 (229)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~-------------------~~~~-~~~ 130 (229)
++|..+.+ .|+..|+.+.+ ..--||+|+-.-..+...+.+.. +... .+.
T Consensus 28 LvpV~gkP-iI~~vl~~l~~----------~Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (297)
T TIGR01105 28 MLPIVDKP-MIQYIVDEIVA----------AGIKEIVLVTHASKNAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPG 96 (297)
T ss_pred eeEECCEE-HHHHHHHHHHH----------CCCCEEEEEecCChHHHHHHHhchHHHHHHHHHhcchhhhhhhhhcCCCC
Confidence 56665543 66666666665 22357777766544333333321 0000 011
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHhcC-CCEEEEEcCCCCCCh-------hhHHHHHHHHHHhC
Q 027065 131 DNVRIILLGRNHGKGEAIRKGMLHSR-GELLLMLDADGATKV-------TDLEKLESQIHAVG 185 (229)
Q Consensus 131 ~~i~vi~~~~~~gk~~a~n~gl~~a~-~d~v~~lD~D~~~~~-------~~l~~l~~~~~~~~ 185 (229)
.+++++..++..|.++|+-.|..... .++++++ +|...++ -.+.++++...+..
T Consensus 97 ~~i~~~~q~~~lGtg~Av~~a~~~l~~~~flvv~-gD~l~~~~~~~~~~~~l~~li~~~~~~~ 158 (297)
T TIGR01105 97 VTIMNVRQAQPLGLGHSILCARPVVGDNPFVVVL-PDIIIDDATADPLRYNLAAMIARFNETG 158 (297)
T ss_pred ceEEEeeCCCcCchHHHHHHHHHHhCCCCEEEEE-CCeeccccccccchhHHHHHHHHHHHhC
Confidence 24667777778999999999999875 3566555 8877654 37888888765433
No 172
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=84.29 E-value=18 Score=28.41 Aligned_cols=99 Identities=15% Similarity=0.164 Sum_probs=58.8
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcC-----CCcEEEEEcCCCCCHH
Q 027065 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYT-----VDNVRIILLGRNHGKG 145 (229)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~-----~~~i~vi~~~~~~gk~ 145 (229)
++|.-|. +-+..+|+.+.+ ..--+|+|+-... ..+.++++.+.+. ...+.+....+..|.+
T Consensus 25 Llpv~g~-pli~~~l~~l~~----------~g~~~iivv~~~~---~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~gt~ 90 (214)
T cd04198 25 LLPVANK-PMIWYPLDWLEK----------AGFEDVIVVVPEE---EQAEISTYLRSFPLNLKQKLDEVTIVLDEDMGTA 90 (214)
T ss_pred cCEECCe-eHHHHHHHHHHH----------CCCCeEEEEECHH---HHHHHHHHHHhcccccCcceeEEEecCCCCcChH
Confidence 5565565 667777777666 1234777776521 2233344433321 0122333344578899
Q ss_pred HHHHHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHhC
Q 027065 146 EAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVG 185 (229)
Q Consensus 146 ~a~n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~ 185 (229)
.++..+.....++ ++++.+|. +.+..+..+++.....+
T Consensus 91 ~al~~~~~~i~~d-~lv~~~D~-i~~~~l~~~l~~h~~~~ 128 (214)
T cd04198 91 DSLRHIRKKIKKD-FLVLSCDL-ITDLPLIELVDLHRSHD 128 (214)
T ss_pred HHHHHHHhhcCCC-EEEEeCcc-ccccCHHHHHHHHhccC
Confidence 9999999887665 67778885 45556778887776544
No 173
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=83.95 E-value=13 Score=30.47 Aligned_cols=79 Identities=16% Similarity=0.238 Sum_probs=47.9
Q ss_pred ceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHhc--CCCEEEEEcCCCC-CChhhHHHHHH
Q 027065 103 TYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS--RGELLLMLDADGA-TKVTDLEKLES 179 (229)
Q Consensus 103 ~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n~gl~~a--~~d~v~~lD~D~~-~~~~~l~~l~~ 179 (229)
--+|+||..... .+.+++....++ ..+.++ ....+....+-.|++.. ..++|++.|++-. ++++.+.++++
T Consensus 68 i~~IvVV~~~~~---~~~~~~~~~~~~-~~i~~v--~gg~~r~~SV~~gl~~l~~~~~~VlihDaarP~vs~~~i~~li~ 141 (252)
T PLN02728 68 VKEIVVVCDPSY---RDVFEEAVENID-VPLKFA--LPGKERQDSVFNGLQEVDANSELVCIHDSARPLVTSADIEKVLK 141 (252)
T ss_pred CCeEEEEeCHHH---HHHHHHHHHhcC-CceEEc--CCCCchHHHHHHHHHhccCCCCEEEEecCcCCCCCHHHHHHHHH
Confidence 346777765221 233333333333 124332 23344567788888876 3578999998554 58999999999
Q ss_pred HHHHhCCc
Q 027065 180 QIHAVGRK 187 (229)
Q Consensus 180 ~~~~~~~~ 187 (229)
....+...
T Consensus 142 ~~~~~ga~ 149 (252)
T PLN02728 142 DAAVHGAA 149 (252)
T ss_pred HHhhCCeE
Confidence 88776543
No 174
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=83.55 E-value=22 Score=28.86 Aligned_cols=43 Identities=14% Similarity=0.158 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHH
Q 027065 140 RNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHA 183 (229)
Q Consensus 140 ~~~gk~~a~n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~ 183 (229)
+..|-++|+..+.+....+.++++++|...+ ..+.++++...+
T Consensus 101 ~~~gt~~al~~~~~~i~~e~flv~~gD~i~~-~dl~~~~~~h~~ 143 (254)
T TIGR02623 101 ESTQTGGRLKRVREYLDDEAFCFTYGDGVAD-IDIKALIAFHRK 143 (254)
T ss_pred CcCCcHHHHHHHHHhcCCCeEEEEeCCeEec-CCHHHHHHHHHH
Confidence 3467788898888887667778999998764 456677775544
No 175
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=83.49 E-value=8.7 Score=34.12 Aligned_cols=94 Identities=15% Similarity=0.152 Sum_probs=58.5
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 027065 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (229)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n~ 150 (229)
++|..+ ...++..++++.+ . .--+++++-.... +.+++.... .+++++..++..|.+.++..
T Consensus 27 l~~i~g-kpli~~~i~~l~~--------~--gi~~i~vv~~~~~----~~i~~~~~~---~~~~~i~~~~~~Gt~~al~~ 88 (456)
T PRK09451 27 LHTLAG-KPMVQHVIDAANE--------L--GAQHVHLVYGHGG----DLLKQTLAD---EPLNWVLQAEQLGTGHAMQQ 88 (456)
T ss_pred cceeCC-hhHHHHHHHHHHh--------c--CCCcEEEEECCCH----HHHHHhhcc---CCcEEEECCCCCCcHHHHHH
Confidence 445544 3455555665544 1 1346666654221 223333222 14667766667788899988
Q ss_pred HHHhcC-CCEEEEEcCCC-CCChhhHHHHHHHHH
Q 027065 151 GMLHSR-GELLLMLDADG-ATKVTDLEKLESQIH 182 (229)
Q Consensus 151 gl~~a~-~d~v~~lD~D~-~~~~~~l~~l~~~~~ 182 (229)
|+.... .+.++++++|. .+.+..+.++++...
T Consensus 89 a~~~l~~~~~vlV~~gD~P~i~~~~i~~l~~~~~ 122 (456)
T PRK09451 89 AAPFFADDEDILMLYGDVPLISVETLQRLRDAKP 122 (456)
T ss_pred HHHhhccCCcEEEEeCCcccCCHHHHHHHHHHhh
Confidence 888764 57899999998 468888999887643
No 176
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=82.83 E-value=20 Score=27.65 Aligned_cols=71 Identities=15% Similarity=0.141 Sum_probs=58.6
Q ss_pred ceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHhcCCCEEEEEcCCCC-CChhhHHHHHHHH
Q 027065 103 TYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGA-TKVTDLEKLESQI 181 (229)
Q Consensus 103 ~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n~gl~~a~~d~v~~lD~D~~-~~~~~l~~l~~~~ 181 (229)
..||+++-+-++..|.+.+++. .+.++..+ ..|-..-+|.+++....+ ++++-+|-. +.|..+..+.+.+
T Consensus 41 ~d~i~v~isp~tp~t~~~~~~~-------gv~vi~tp-G~GYv~Dl~~al~~l~~P-~lvvsaDLp~l~~~~i~~vi~~~ 111 (177)
T COG2266 41 VDEIIVAISPHTPKTKEYLESV-------GVKVIETP-GEGYVEDLRFALESLGTP-ILVVSADLPFLNPSIIDSVIDAA 111 (177)
T ss_pred cCcEEEEeCCCCHhHHHHHHhc-------CceEEEcC-CCChHHHHHHHHHhcCCc-eEEEecccccCCHHHHHHHHHHH
Confidence 4699999999999999888765 68888876 678999999999998775 555566665 5899999999998
Q ss_pred H
Q 027065 182 H 182 (229)
Q Consensus 182 ~ 182 (229)
.
T Consensus 112 ~ 112 (177)
T COG2266 112 A 112 (177)
T ss_pred h
Confidence 7
No 177
>PF01644 Chitin_synth_1: Chitin synthase; InterPro: IPR004834 This region is found commonly in chitin synthases classes I, II and III 2.4.1.16 from EC. Chitin a linear homopolymer of GlcNAc residues, it is an important component of the cell wall of fungi and is synthesised on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases []. ; GO: 0004100 chitin synthase activity, 0006031 chitin biosynthetic process
Probab=82.80 E-value=19 Score=27.43 Aligned_cols=42 Identities=12% Similarity=0.050 Sum_probs=31.1
Q ss_pred CCCCHHHHH----HHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHH
Q 027065 140 RNHGKGEAI----RKGMLHSRGELLLMLDADGATKVTDLEKLESQI 181 (229)
Q Consensus 140 ~~~gk~~a~----n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~ 181 (229)
.|.||-..- |.=.+..+-++++++|+.+.+.++.|.+|.++|
T Consensus 118 ~N~kKinSHrWfFnaf~~~l~P~vcvllDvGT~P~~~siy~Lwkaf 163 (163)
T PF01644_consen 118 KNAKKINSHRWFFNAFCRQLQPNVCVLLDVGTKPGKDSIYHLWKAF 163 (163)
T ss_pred ccccccchhhHHHHHHHhhcCCcEEEEEecCCCcCchHHHHHHhhC
Confidence 355654333 333345578999999999999999999998764
No 178
>PF07507 WavE: WavE lipopolysaccharide synthesis; InterPro: IPR011122 These proteins are encoded by putative wav gene clusters, which are responsible for the synthesis of the core oligosaccharide (OS) region of Vibrio cholerae lipopolysaccharide [].
Probab=82.71 E-value=6.4 Score=33.30 Aligned_cols=95 Identities=11% Similarity=0.061 Sum_probs=55.5
Q ss_pred CCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHH--HH-HHHcCCCcEEEEEc-CCCCCHHHHH---
Q 027065 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAF--DF-VRKYTVDNVRIILL-GRNHGKGEAI--- 148 (229)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~--~~-~~~~~~~~i~vi~~-~~~~gk~~a~--- 148 (229)
.++....+|++++.. ..|..|||+.-=..+|- +.+. ++ ..+.| +..++.. ....+...+.
T Consensus 17 ~~~~~t~~~l~siR~---------~~P~A~IILSTW~~~d~--~~l~~D~vv~s~DP--G~~~~~~~~~~~~~~~NiNrQ 83 (311)
T PF07507_consen 17 QEPDITKNCLASIRK---------HFPGAEIILSTWEGQDI--SGLDYDQVVISDDP--GSNVVLYKKDGKPGPNNINRQ 83 (311)
T ss_pred ccchhHHHHHHHHHH---------hCCCCEEEEECCCCCCc--ccCCcceEEecCCC--CcceeeccCCCCCcccchhHH
Confidence 455667888888877 35678988843222221 1111 11 12233 3333211 1111113333
Q ss_pred ----HHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHH
Q 027065 149 ----RKGMLHSRGELLLMLDADGATKVTDLEKLESQIHA 183 (229)
Q Consensus 149 ----n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~ 183 (229)
..|++.++.+|++=+=+|..+..+.+-++...+.+
T Consensus 84 i~St~aGL~~~~~~Ya~KlRtD~~l~~~~~l~~~~~~~~ 122 (311)
T PF07507_consen 84 IVSTLAGLKAAKTKYAMKLRTDNRLTGNNFLDLYEKYPD 122 (311)
T ss_pred HHHHHHHHHHhCCceEEEEcccccccchHHHHHHHHhcc
Confidence 45889999999999999999988877666666655
No 179
>PF13896 Glyco_transf_49: Glycosyl-transferase for dystroglycan
Probab=82.68 E-value=1.8 Score=36.69 Aligned_cols=41 Identities=17% Similarity=0.022 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHh
Q 027065 144 KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAV 184 (229)
Q Consensus 144 k~~a~n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~ 184 (229)
...-+|.|+..++.++++.+|.|..++++.-+.+.+.+...
T Consensus 115 iN~LRNvAr~~a~T~~v~~~DvD~~ps~~l~~~l~~~~~~~ 155 (317)
T PF13896_consen 115 INLLRNVARSGARTDYVFLLDVDFLPSPGLYEKLLRFARRN 155 (317)
T ss_pred hHHHHHHHHHhcCcceEEEecceeeeCcchHHHHHHHhhhh
Confidence 56789999999999999999999999999988888877654
No 180
>PLN02436 cellulose synthase A
Probab=82.61 E-value=3.5 Score=40.28 Aligned_cols=52 Identities=17% Similarity=0.157 Sum_probs=41.3
Q ss_pred cEEEEEcCCCCC-----HHHHHHHHHHhc----CCCEEEEEcCCCCC-ChhhHHHHHHHHHH
Q 027065 132 NVRIILLGRNHG-----KGEAIRKGMLHS----RGELLLMLDADGAT-KVTDLEKLESQIHA 183 (229)
Q Consensus 132 ~i~vi~~~~~~g-----k~~a~n~gl~~a----~~d~v~~lD~D~~~-~~~~l~~l~~~~~~ 183 (229)
++.++.++++.| |++|+|..++.+ +++||+-+|+|... ++..+.+.+=.|-+
T Consensus 533 ~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaP~ILNLDCDmYiNns~a~r~AMCfllD 594 (1094)
T PLN02436 533 RLVYVSREKRPGFDHHKKAGAMNSLIRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMD 594 (1094)
T ss_pred eEEEEecccCCCCCcchhhhhhhhhhhhheeecCCceEEecccccccCchHHHHHhhhhhcC
Confidence 777777776543 999999999854 78999999999976 77777777776654
No 181
>PLN02190 cellulose synthase-like protein
Probab=81.91 E-value=3.4 Score=38.92 Aligned_cols=53 Identities=11% Similarity=0.044 Sum_probs=42.0
Q ss_pred cEEEEEcCCCCC-----HHHHHHHHHHh----cCCCEEEEEcCCCCC-ChhhHHHHHHHHHHh
Q 027065 132 NVRIILLGRNHG-----KGEAIRKGMLH----SRGELLLMLDADGAT-KVTDLEKLESQIHAV 184 (229)
Q Consensus 132 ~i~vi~~~~~~g-----k~~a~n~gl~~----a~~d~v~~lD~D~~~-~~~~l~~l~~~~~~~ 184 (229)
.+-++.++++.| |++|+|..++. +++++|+-+|+|... +++.+.+.+=.+-+.
T Consensus 253 ~LVYvSREKrP~~~Hh~KAGAmNaLlRVSavmtNaP~iLnlDCDmY~Nns~~~r~AmCf~ld~ 315 (756)
T PLN02190 253 HLVYISREKRPNYLHHYKAGAMNFLVRVSGLMTNAPYMLNVDCDMYANEADVVRQAMCIFLQK 315 (756)
T ss_pred eEEEEeccCCCCCCcccccchhHHHHHHhhhhccCCeEEEecCccccCchhHHHHhhhhhcCC
Confidence 777777765433 99999999875 479999999999987 788888877776543
No 182
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=81.23 E-value=20 Score=28.93 Aligned_cols=95 Identities=15% Similarity=0.036 Sum_probs=56.8
Q ss_pred CCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCC--CCHH--------
Q 027065 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRN--HGKG-------- 145 (229)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~--~gk~-------- 145 (229)
|-...+..++.|++.. ...+..++|++|+-+++..+.++++...+. ..++++..+.. ....
T Consensus 11 ~y~~~~~v~i~Sl~~~--------~~~~~~~~il~~~is~~~~~~L~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~ 81 (246)
T cd00505 11 EYLRGAIVLMKSVLRH--------RTKPLRFHVLTNPLSDTFKAALDNLRKLYN-FNYELIPVDILDSVDSEHLKRPIKI 81 (246)
T ss_pred chhHHHHHHHHHHHHh--------CCCCeEEEEEEccccHHHHHHHHHHHhccC-ceEEEEeccccCcchhhhhcCcccc
Confidence 3345666777777762 233789999999877778888887755433 24566554311 1110
Q ss_pred H--HHHHHHHhcC-CCEEEEEcCCCCCChhhHHHHHHH
Q 027065 146 E--AIRKGMLHSR-GELLLMLDADGATKVTDLEKLESQ 180 (229)
Q Consensus 146 ~--a~n~gl~~a~-~d~v~~lD~D~~~~~~~l~~l~~~ 180 (229)
. .+-...+... .+=|+++|+|..+. +.+.++.+.
T Consensus 82 ~~y~RL~i~~llp~~~kvlYLD~D~iv~-~di~~L~~~ 118 (246)
T cd00505 82 VTLTKLHLPNLVPDYDKILYVDADILVL-TDIDELWDT 118 (246)
T ss_pred ceeHHHHHHHHhhccCeEEEEcCCeeec-cCHHHHhhc
Confidence 0 1111112223 68899999999887 456666653
No 183
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=79.92 E-value=23 Score=30.59 Aligned_cols=52 Identities=12% Similarity=0.040 Sum_probs=39.1
Q ss_pred ceEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHH
Q 027065 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDF 124 (229)
Q Consensus 66 p~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~ 124 (229)
+.+.|||-++|..++++..|+|+-+.- .-...-+|+.-|.-+++..++++.+
T Consensus 31 ~~~vivvqVH~r~~yl~~li~sL~~~~-------~I~~~llifSHd~~~~ein~~v~~I 82 (356)
T PF05060_consen 31 DSIVIVVQVHNRPEYLKLLIDSLSQAR-------GIEEALLIFSHDFYSEEINDLVQSI 82 (356)
T ss_pred CCEEEEEEECCcHHHHHHHHHHHHHhh-------CccceEEEEeccCChHHHHHHHHhC
Confidence 569999999999999999888887741 2335667777777777777776644
No 184
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=79.66 E-value=4.1 Score=38.26 Aligned_cols=53 Identities=15% Similarity=0.055 Sum_probs=41.3
Q ss_pred CcEEEEEcCCCC-----CHHHHHHHHHHhc----CCCEEEEEcCCCCC-ChhhHHHHHHHHHH
Q 027065 131 DNVRIILLGRNH-----GKGEAIRKGMLHS----RGELLLMLDADGAT-KVTDLEKLESQIHA 183 (229)
Q Consensus 131 ~~i~vi~~~~~~-----gk~~a~n~gl~~a----~~d~v~~lD~D~~~-~~~~l~~l~~~~~~ 183 (229)
|.+-++.++++. -|++|+|..++.+ +++||+.+|+|... +|..+.+.+=.+.+
T Consensus 166 P~lvYvsREKrp~~~Hh~KAGAmNaL~RvSa~~tN~p~iLnlDcD~y~nn~~~~~~amc~~~d 228 (720)
T PF03552_consen 166 PMLVYVSREKRPGYPHHFKAGAMNALLRVSAVMTNAPFILNLDCDMYINNSQALREAMCFFMD 228 (720)
T ss_pred CeEEEEeccCCCCCCchhhhcccccccccceeecCCCEEEEecccccccchHHHHHHHHhhcc
Confidence 377777776653 3999999988654 78999999999976 67778777777754
No 185
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=79.28 E-value=16 Score=29.26 Aligned_cols=104 Identities=18% Similarity=0.235 Sum_probs=52.0
Q ss_pred EEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEE-EEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC---CCC
Q 027065 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEV-LIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR---NHG 143 (229)
Q Consensus 68 vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~ei-ivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~---~~g 143 (229)
|.-+|-+|+.. .+.++.++..++. +.-.+ |-||-.+++...+.++++...++ +++++.... +.|
T Consensus 1 iAylil~h~~~---~~~~~~l~~~l~~-------~~~~f~iHiD~k~~~~~~~~~~~~~~~~~--nv~~v~~r~~v~WG~ 68 (244)
T PF02485_consen 1 IAYLILAHKND---PEQLERLLRLLYH-------PDNDFYIHIDKKSPDYFYEEIKKLISCFP--NVHFVPKRVDVRWGG 68 (244)
T ss_dssp EEEEEEESS-----HHHHHHHHHHH---------TTSEEEEEE-TTS-HHHHHHHHHHHCT-T--TEEE-SS-----TTS
T ss_pred CEEEEEecCCC---HHHHHHHHHHhcC-------CCCEEEEEEcCCCChHHHHHHHHhcccCC--ceeecccccccccCC
Confidence 34577786633 3445555554432 23344 55777667777777777767777 787776322 333
Q ss_pred --HHHH----HHHHHH-hcCCCEEEEEcCCCCCChhhHHHHHHHHHHh
Q 027065 144 --KGEA----IRKGML-HSRGELLLMLDADGATKVTDLEKLESQIHAV 184 (229)
Q Consensus 144 --k~~a----~n~gl~-~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~ 184 (229)
...| +..|++ ..+.+|++++.++|.+-. ..+++.+.++.+
T Consensus 69 ~S~v~A~l~ll~~al~~~~~~~y~~llSg~D~Pl~-s~~~i~~~l~~~ 115 (244)
T PF02485_consen 69 FSLVEATLNLLREALKRDGDWDYFILLSGQDYPLK-SNEEIHEFLESN 115 (244)
T ss_dssp HHHHHHHHHHHHHHHHH-S---EEEEEETTEEESS--HHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHhcCCCCcEEEEccccccccc-chHHHHHHHHhc
Confidence 3333 344555 246799999888877521 233455556555
No 186
>PLN02400 cellulose synthase
Probab=78.74 E-value=3.8 Score=40.12 Aligned_cols=53 Identities=17% Similarity=0.179 Sum_probs=41.9
Q ss_pred CcEEEEEcCCCCC-----HHHHHHHHHHh----cCCCEEEEEcCCCCC-ChhhHHHHHHHHHH
Q 027065 131 DNVRIILLGRNHG-----KGEAIRKGMLH----SRGELLLMLDADGAT-KVTDLEKLESQIHA 183 (229)
Q Consensus 131 ~~i~vi~~~~~~g-----k~~a~n~gl~~----a~~d~v~~lD~D~~~-~~~~l~~l~~~~~~ 183 (229)
|.+.++.++++.| |++|+|..++. ++++||+-+|+|.+. ++..+.+.+=.+-+
T Consensus 523 P~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~ILNlDCDmY~Nns~a~r~AMCf~lD 585 (1085)
T PLN02400 523 PRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMD 585 (1085)
T ss_pred ceeEEEeccCCCCCCcchhhhhhHHHHHHhhhhcCCceEEecccccccCCchhHHhhhhheec
Confidence 3777777776544 99999999984 479999999999999 77777777666644
No 187
>PF09886 DUF2113: Uncharacterized protein conserved in archaea (DUF2113); InterPro: IPR016762 There is currently no experimental data for members of this group or their homologues. Based on distant sequence similarity, they may be tentatively predicted to be nucleic acid-binding proteins, they are also likely to be linked to methanogenesis or a process closely connected to it.
Probab=78.31 E-value=30 Score=26.98 Aligned_cols=93 Identities=15% Similarity=0.223 Sum_probs=56.0
Q ss_pred cCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCC----------cchHHHHHHHH----HHcCCCcEEEEEcCC
Q 027065 75 FNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSS----------DGTKRVAFDFV----RKYTVDNVRIILLGR 140 (229)
Q Consensus 75 ~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~----------d~t~~~~~~~~----~~~~~~~i~vi~~~~ 140 (229)
-+.+.++...|+.+-....+....||. +++|++-++... |+..+..+++. .-.| -++++..+
T Consensus 79 I~dEtYlp~LL~kLW~kyGr~~V~QP~-Rf~I~i~~~~~~~~~i~dlvV~Dp~~~l~~~v~da~~RI~P-EGFRVr~~-- 154 (188)
T PF09886_consen 79 IEDETYLPDLLKKLWEKYGRENVDQPD-RFEIIIDSDIDEAKDIEDLVVYDPSEDLKKKVYDAMFRIAP-EGFRVRRH-- 154 (188)
T ss_pred EcccchHHHHHHHHHHHhCccccCCCC-ceEEEecCCcccccchhhcEEECcHHHHHHHHHHHHHHhCC-CccEEeec--
Confidence 355678888888886654444444544 788887666543 22222222111 1112 12333222
Q ss_pred CCCHHHHHHHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHh
Q 027065 141 NHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAV 184 (229)
Q Consensus 141 ~~gk~~a~n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~ 184 (229)
...++-++++-++..+.++|++...+.+...
T Consensus 155 -------------~~~~~~f~~vASE~~i~~ewi~~a~e~~~el 185 (188)
T PF09886_consen 155 -------------YYEGNSFAFVASEETIKDEWIEEAKEMIEEL 185 (188)
T ss_pred -------------cccCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 1357899999999999999998888877654
No 188
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=76.93 E-value=26 Score=28.56 Aligned_cols=93 Identities=15% Similarity=0.113 Sum_probs=60.3
Q ss_pred CCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcC--C---C--CCH--HHH
Q 027065 77 EEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG--R---N--HGK--GEA 147 (229)
Q Consensus 77 e~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~--~---~--~gk--~~a 147 (229)
....+..++.|++. .+..++++.|++|+-+++..+.++++..+++ ..++++... . . ... ..+
T Consensus 12 y~~~~~v~l~Sll~--------nn~~~~~fyil~~~is~e~~~~l~~~~~~~~-~~i~~i~i~~~~~~~~~~~~~~~~~~ 82 (248)
T cd06432 12 YERFLRIMMLSVMK--------NTKSPVKFWFIKNFLSPQFKEFLPEMAKEYG-FEYELVTYKWPRWLHKQTEKQRIIWG 82 (248)
T ss_pred HHHHHHHHHHHHHH--------cCCCCEEEEEEeCCCCHHHHHHHHHHHHHhC-CceEEEEecChhhhhcccccchhHHH
Confidence 33567777888877 3345799999999999999999999988876 245555543 1 0 111 111
Q ss_pred HHH-HHH-hc--CCCEEEEEcCCCCCChhhHHHHHH
Q 027065 148 IRK-GML-HS--RGELLLMLDADGATKVTDLEKLES 179 (229)
Q Consensus 148 ~n~-gl~-~a--~~d~v~~lD~D~~~~~~~l~~l~~ 179 (229)
... .+. .- .-+=|+.+|+|..+. +.|.++.+
T Consensus 83 y~rL~~~~lLP~~vdkvLYLD~Dilv~-~dL~eL~~ 117 (248)
T cd06432 83 YKILFLDVLFPLNVDKVIFVDADQIVR-TDLKELMD 117 (248)
T ss_pred HHHHHHHHhhhhccCEEEEEcCCceec-ccHHHHHh
Confidence 121 122 22 348899999999876 55666664
No 189
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=76.90 E-value=34 Score=26.87 Aligned_cols=100 Identities=19% Similarity=0.174 Sum_probs=55.5
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcC---CCcEEEEEcCCCCCHHHH
Q 027065 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYT---VDNVRIILLGRNHGKGEA 147 (229)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~---~~~i~vi~~~~~~gk~~a 147 (229)
++|.-|. .-|...|+++.+ ..--+|+|+.+...+...+.+++...... ...+.++..++..|.+.+
T Consensus 25 llpi~g~-piI~~~l~~l~~----------~Gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~a 93 (217)
T cd04197 25 LLPLANV-PLIDYTLEFLAL----------NGVEEVFVFCCSHSDQIKEYIEKSKWSKPKSSLMIVIIIMSEDCRSLGDA 93 (217)
T ss_pred eeEECCE-ehHHHHHHHHHH----------CCCCeEEEEeCCCHHHHHHHHhhccccccccCcceEEEEeCCCcCccchH
Confidence 5677776 577777777776 22457777776444333333333211000 013566666555565655
Q ss_pred HHHHHH--hcCCCEEEEEcCCCCCChhhHHHHHHHHHH
Q 027065 148 IRKGML--HSRGELLLMLDADGATKVTDLEKLESQIHA 183 (229)
Q Consensus 148 ~n~gl~--~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~ 183 (229)
+..... ....+ ++++.+|..... .+..+++...+
T Consensus 94 l~~~~~~~~~~~~-flv~~gD~i~~~-dl~~~l~~h~~ 129 (217)
T cd04197 94 LRDLDAKGLIRGD-FILVSGDVVSNI-DLKEILEEHKE 129 (217)
T ss_pred HHHHhhccccCCC-EEEEeCCeeecc-CHHHHHHHHHH
Confidence 543222 12344 668899987754 47777776655
No 190
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=75.83 E-value=37 Score=30.46 Aligned_cols=98 Identities=17% Similarity=0.137 Sum_probs=55.4
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 027065 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (229)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n~ 150 (229)
++|..+....++.+++.+... ..-+++||-+. .-...+++....+..+..+++..+...|.+.|.-.
T Consensus 26 ~l~l~g~~~ll~~tl~~l~~~----------~~~~iviv~~~---~~~~~~~~~l~~~~~~~~~~i~Ep~~~gTa~ai~~ 92 (468)
T TIGR01479 26 FLALVGDLTMLQQTLKRLAGL----------PCSSPLVICNE---EHRFIVAEQLREIGKLASNIILEPVGRNTAPAIAL 92 (468)
T ss_pred eeEcCCCCcHHHHHHHHHhcC----------CCcCcEEecCH---HHHHHHHHHHHHcCCCcceEEecccccCchHHHHH
Confidence 345545556677777776551 12366666432 11223333333432113456676766777666655
Q ss_pred HHHhc-----CCCEEEEEcCCCCCC-hhhHHHHHHHH
Q 027065 151 GMLHS-----RGELLLMLDADGATK-VTDLEKLESQI 181 (229)
Q Consensus 151 gl~~a-----~~d~v~~lD~D~~~~-~~~l~~l~~~~ 181 (229)
|.... ..++++++-+|..+. +..+.++++..
T Consensus 93 aa~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~ 129 (468)
T TIGR01479 93 AALLAARRNGEDPLLLVLAADHVITDEDAFQAAVKLA 129 (468)
T ss_pred HHHHHHHHHCCCcEEEEecCceeecCHHHHHHHHHHH
Confidence 44433 246899999997764 46677777654
No 191
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=75.03 E-value=33 Score=27.53 Aligned_cols=92 Identities=21% Similarity=0.195 Sum_probs=54.7
Q ss_pred CChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCC----------CC-H-HH
Q 027065 79 HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRN----------HG-K-GE 146 (229)
Q Consensus 79 ~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~----------~g-k-~~ 146 (229)
..+..++.|++.. .+..++.++|+.++-++...+.++++...+. ..++++..+.. .. . ..
T Consensus 13 ~~~~~~l~Sl~~~-------~~~~~~~~~il~~~is~~~~~~L~~~~~~~~-~~i~~~~i~~~~~~~~~~~~~~~~~~~y 84 (248)
T cd04194 13 PYLAVTIKSILAN-------NSKRDYDFYILNDDISEENKKKLKELLKKYN-SSIEFIKIDNDDFKFFPATTDHISYATY 84 (248)
T ss_pred HHHHHHHHHHHhc-------CCCCceEEEEEeCCCCHHHHHHHHHHHHhcC-CeEEEEEcCHHHHhcCCcccccccHHHH
Confidence 4455556666551 1224789999999888888888888876533 35666654321 00 1 11
Q ss_pred HHHHHHHhc-CCCEEEEEcCCCCCChhhHHHHHH
Q 027065 147 AIRKGMLHS-RGELLLMLDADGATKVTDLEKLES 179 (229)
Q Consensus 147 a~n~gl~~a-~~d~v~~lD~D~~~~~~~l~~l~~ 179 (229)
++=...+.. ..+-++++|+|..+.. -+..+.+
T Consensus 85 ~rl~l~~ll~~~~rvlylD~D~lv~~-di~~L~~ 117 (248)
T cd04194 85 YRLLIPDLLPDYDKVLYLDADIIVLG-DLSELFD 117 (248)
T ss_pred HHHHHHHHhcccCEEEEEeCCEEecC-CHHHHhc
Confidence 111122223 3788999999998765 4445544
No 192
>PHA01631 hypothetical protein
Probab=74.84 E-value=4.2 Score=30.81 Aligned_cols=63 Identities=13% Similarity=0.180 Sum_probs=39.4
Q ss_pred ceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCC-----CCHHHHHHHHHHh---cCCCEEEEEcCCCCCChh
Q 027065 103 TYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRN-----HGKGEAIRKGMLH---SRGELLLMLDADGATKVT 172 (229)
Q Consensus 103 ~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~-----~gk~~a~n~gl~~---a~~d~v~~lD~D~~~~~~ 172 (229)
+++.++|||.=.+-|.-.++.. .-.+++...+ ...+..+-..++. ..-|+++++|+|..+++-
T Consensus 17 ~~D~V~VD~~~~~~~~c~~~~~-------~~~Ii~~~t~~e~Rr~RIAk~Ll~Iln~~s~i~DDi~~iIDSDV~ipn~ 87 (176)
T PHA01631 17 DFDYVVVDKTFNDMTECQIPKY-------QEKIIWIMTNTEIRWLRIAKQLLTIVNFAKNIEDDIIAIIDSDLIIPNL 87 (176)
T ss_pred cccEEEEccccccccccccccc-------CCceEEecccchhHHHHHHHHHHHHHHhhccCCccEEEEeccceEecCc
Confidence 5889999997776554322222 2334444332 3355566666443 567888999999998765
No 193
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=74.62 E-value=44 Score=27.02 Aligned_cols=93 Identities=13% Similarity=0.094 Sum_probs=60.1
Q ss_pred CCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHhc
Q 027065 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS 155 (229)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n~gl~~a 155 (229)
+....++.+|+.++.. ..--+|||+.+...+...+.+-+ ....+++.++.. ..........|++..
T Consensus 30 ~g~pll~~tl~~f~~~---------~~i~~Ivvv~~~~~~~~~~~~~~---~~~~~~v~~v~G--G~~R~~SV~~gL~~~ 95 (230)
T COG1211 30 GGRPLLEHTLEAFLES---------PAIDEIVVVVSPEDDPYFEKLPK---LSADKRVEVVKG--GATRQESVYNGLQAL 95 (230)
T ss_pred CCEEehHHHHHHHHhC---------cCCCeEEEEEChhhhHHHHHhhh---hccCCeEEEecC--CccHHHHHHHHHHHh
Confidence 4456778888888872 22458888877655554433332 111124665553 345667778888877
Q ss_pred C---CCEEEEEcCCC-CCChhhHHHHHHHHH
Q 027065 156 R---GELLLMLDADG-ATKVTDLEKLESQIH 182 (229)
Q Consensus 156 ~---~d~v~~lD~D~-~~~~~~l~~l~~~~~ 182 (229)
. .++|++-|+-= .++++.+++++....
T Consensus 96 ~~~~~~~VlvHDaaRPf~~~~~i~~li~~~~ 126 (230)
T COG1211 96 SKYDSDWVLVHDAARPFLTPKLIKRLIELAD 126 (230)
T ss_pred hccCCCEEEEeccccCCCCHHHHHHHHHhhc
Confidence 6 79999999854 458888999994443
No 194
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=74.13 E-value=40 Score=26.29 Aligned_cols=91 Identities=10% Similarity=0.245 Sum_probs=55.8
Q ss_pred CChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCC-CCHHHHHHHHHHhcCC
Q 027065 79 HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRN-HGKGEAIRKGMLHSRG 157 (229)
Q Consensus 79 ~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~-~gk~~a~n~gl~~a~~ 157 (229)
+-+..+++.+.+ ...--+|+|.-| +++..++++++ . +.++..++. ..-......++.....
T Consensus 25 pLi~~~i~~a~~---------s~~~d~IvVaTd--~~~i~~~~~~~----g---~~v~~~~~~~~~~~~r~~~~~~~~~~ 86 (217)
T PF02348_consen 25 PLIEYVIERAKQ---------SKLIDEIVVATD--DEEIDDIAEEY----G---AKVIFRRGSLADDTDRFIEAIKHFLA 86 (217)
T ss_dssp EHHHHHHHHHHH---------TTTTSEEEEEES--SHHHHHHHHHT----T---SEEEE--TTSSSHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHh---------CCCCCeEEEeCC--CHHHHHHHHHc----C---CeeEEcChhhcCCcccHHHHHHHhhh
Confidence 455666666665 122346666544 33344555554 2 444444333 3444455666776666
Q ss_pred C---EEEEEcCCCCC-ChhhHHHHHHHHHHhCCc
Q 027065 158 E---LLLMLDADGAT-KVTDLEKLESQIHAVGRK 187 (229)
Q Consensus 158 d---~v~~lD~D~~~-~~~~l~~l~~~~~~~~~~ 187 (229)
+ +++.+.+|+.+ +|..+.++++.+.+....
T Consensus 87 ~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~ 120 (217)
T PF02348_consen 87 DDEDIVVRLQGDSPLLDPTSIDRAIEDIREANED 120 (217)
T ss_dssp STTSEEEEESTTETT--HHHHHHHHHHHHHSTTS
T ss_pred hHHhhccccCCeeeECCHHHHHHHHHHHhcCchh
Confidence 6 99999988886 999999999999987754
No 195
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=73.86 E-value=24 Score=29.12 Aligned_cols=94 Identities=22% Similarity=0.233 Sum_probs=44.8
Q ss_pred EEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHH--cCCCcEEEEEcCCCCCH---
Q 027065 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK--YTVDNVRIILLGRNHGK--- 144 (229)
Q Consensus 70 viip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~--~~~~~i~vi~~~~~~gk--- 144 (229)
|||++.+.. +...+ .+++.++.. -..-+.||+.-- .+|-+.+..+++... ...-+++-+..++..+.
T Consensus 4 IVi~~g~~~--~~~a~-~lI~~LR~~---g~~LPIEI~~~~--~~dl~~~~~~~l~~~q~v~~vd~~~~~~~~~~~~~~~ 75 (271)
T PF11051_consen 4 IVITAGDKY--LWLAL-RLIRVLRRL---GNTLPIEIIYPG--DDDLSKEFCEKLLPDQDVWFVDASCVIDPDYLGKSFS 75 (271)
T ss_pred EEEEecCcc--HHHHH-HHHHHHHHh---CCCCCEEEEeCC--ccccCHHHHHHHhhhhhhheecceEEeeccccccccc
Confidence 788887733 33322 333334433 234578887773 223333333333320 00012333333322222
Q ss_pred --H-HHHHHHHHhcCCCEEEEEcCCCCCCh
Q 027065 145 --G-EAIRKGMLHSRGELLLMLDADGATKV 171 (229)
Q Consensus 145 --~-~a~n~gl~~a~~d~v~~lD~D~~~~~ 171 (229)
+ ...-.|+-.++-+=|+++|+|..+-.
T Consensus 76 ~~~~~~K~lA~l~ssFeevllLDaD~vpl~ 105 (271)
T PF11051_consen 76 KKGFQNKWLALLFSSFEEVLLLDADNVPLV 105 (271)
T ss_pred cCCchhhhhhhhhCCcceEEEEcCCccccc
Confidence 1 12223444556788999999999733
No 196
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=73.84 E-value=53 Score=27.58 Aligned_cols=104 Identities=12% Similarity=0.131 Sum_probs=59.7
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHH---H------------HH----c-CC
Q 027065 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDF---V------------RK----Y-TV 130 (229)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~---~------------~~----~-~~ 130 (229)
++|..+. ..+..+|+++.+. .--+|+|+-.-..+...+.+..- . .+ . +.
T Consensus 33 l~pv~g~-pii~~~l~~l~~~----------gi~~i~vv~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~e~~~i~~~~ 101 (302)
T PRK13389 33 MLPLVDK-PLIQYVVNECIAA----------GITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKRQLLDEVQSICPPH 101 (302)
T ss_pred eeEECCE-EHHHHHHHHHHHC----------CCCEEEEEeCCCHHHHHHHHccchhhhhhhhhhhhhHHHHhhhhccccC
Confidence 5666665 7777777777772 23467776664443333333210 0 00 0 10
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHhcCCCEEEEEcCCCCCC-------hhhHHHHHHHHHHhC
Q 027065 131 DNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATK-------VTDLEKLESQIHAVG 185 (229)
Q Consensus 131 ~~i~vi~~~~~~gk~~a~n~gl~~a~~d~v~~lD~D~~~~-------~~~l~~l~~~~~~~~ 185 (229)
..+......+..|.+.|+-.+......+-++++-+|..++ ...+.++++...+..
T Consensus 102 ~~i~~~~q~~~~Gtg~Av~~a~~~~~~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~~~ 163 (302)
T PRK13389 102 VTIMQVRQGLAKGLGHAVLCAHPVVGDEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETG 163 (302)
T ss_pred ceEEEeecCCCCChHHHHHHHHHHcCCCCEEEEeCcceecccccccccccHHHHHHHHHhcC
Confidence 1233444445678899988887776444456667888764 367888888765443
No 197
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=73.66 E-value=5.9 Score=38.74 Aligned_cols=51 Identities=16% Similarity=0.160 Sum_probs=38.6
Q ss_pred cEEEEEcCCCCC-----HHHHHHHHHHhc----CCCEEEEEcCCCCC-ChhhHHHHHHHHH
Q 027065 132 NVRIILLGRNHG-----KGEAIRKGMLHS----RGELLLMLDADGAT-KVTDLEKLESQIH 182 (229)
Q Consensus 132 ~i~vi~~~~~~g-----k~~a~n~gl~~a----~~d~v~~lD~D~~~-~~~~l~~l~~~~~ 182 (229)
.+-++.++++.| |++|+|.-++.+ +++||+-+|.|... ++..+.+.+=.+-
T Consensus 455 ~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~iLNlDCDmY~Nns~a~r~AMCf~l 515 (1044)
T PLN02915 455 RLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLM 515 (1044)
T ss_pred eeEEEecccCCCCCcchhhhhhhhHhhhhheeecCcEEEeeccccccCcchhhHhhceeee
Confidence 677777766543 999999999875 78999999999998 5555555554443
No 198
>KOG1022 consensus Acetylglucosaminyltransferase EXT2/exostosin 2 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=72.60 E-value=17 Score=33.02 Aligned_cols=111 Identities=11% Similarity=0.046 Sum_probs=67.5
Q ss_pred CCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcc-hHHHHHHHHHHcCCCcEEEEEcCCCC
Q 027065 64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDG-TKRVAFDFVRKYTVDNVRIILLGRNH 142 (229)
Q Consensus 64 ~~p~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~-t~~~~~~~~~~~~~~~i~vi~~~~~~ 142 (229)
.....|.++-+||+-+.+...+..... -..--+|+||=|.-..+ -.+.++.... ..+++....+|
T Consensus 441 ~~qgFTlim~TYdR~d~L~k~v~~ys~---------vPsL~kIlVVWNnq~k~PP~es~~~~~~----VPlr~r~qkeN- 506 (691)
T KOG1022|consen 441 HSQGFTLIMLTYDRVDLLKKLVKHYSR---------VPSLKKILVVWNNQGKNPPPESLEPDIA----VPLRFRQQKEN- 506 (691)
T ss_pred cccceeeeeehHHHHHHHHHHHHHHhh---------CCCcceEEEEecCCCCCCChhhccccCC----ccEEEEehhhh-
Confidence 445699999999964333333222222 12245666665532111 1122221111 24666555443
Q ss_pred CHHHHHHHHH---HhcCCCEEEEEcCCCCCChhhHHHHHHHHHHhCCcceeec
Q 027065 143 GKGEAIRKGM---LHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHG 192 (229)
Q Consensus 143 gk~~a~n~gl---~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~ 192 (229)
.+|+=+ ...+.+-|+-+|+|..+.-+.|..-.+-.++.|+...++-
T Consensus 507 ----sLnNRF~~~peieT~AVL~IDDDIim~~ddldFgf~VWrefPD~lVGF~ 555 (691)
T KOG1022|consen 507 ----SLNNRFEPYPEIETEAVLEIDDDIIMPCDDLDFGFEVWREFPDRLVGFV 555 (691)
T ss_pred ----hhhcccccCcccccceeEEecCceeeecchhHHHHHHHHhCccceeccC
Confidence 444434 4567899999999999999999999999999998776544
No 199
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=71.83 E-value=31 Score=28.68 Aligned_cols=60 Identities=13% Similarity=0.115 Sum_probs=45.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHHhcCCC-EEEEEcCCCCCC-hhhHHHHHHHHHHhCCccee
Q 027065 131 DNVRIILLGRNHGKGEAIRKGMLHSRGE-LLLMLDADGATK-VTDLEKLESQIHAVGRKEYN 190 (229)
Q Consensus 131 ~~i~vi~~~~~~gk~~a~n~gl~~a~~d-~v~~lD~D~~~~-~~~l~~l~~~~~~~~~~~~~ 190 (229)
.++.+++.++..|.++|.-.|=.....+ +.+.+-+|...+ +..+.+|++.+++....+++
T Consensus 97 ~~i~~vRQ~e~~GLGhAVl~A~~~vg~EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~svi~ 158 (291)
T COG1210 97 VTISFVRQKEPLGLGHAVLCAKPFVGDEPFAVLLPDDLVDSEKPCLKQMIELYEETGGSVIG 158 (291)
T ss_pred ceEEEEecCCCCcchhHHHhhhhhcCCCceEEEeCCeeecCCchHHHHHHHHHHHhCCcEEE
Confidence 4678888888899999999999888776 555555554443 68899999999887764443
No 200
>PRK10122 GalU regulator GalF; Provisional
Probab=71.41 E-value=60 Score=27.16 Aligned_cols=53 Identities=15% Similarity=0.228 Sum_probs=38.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHhcC-CCEEEEEcCCCCCChh-------hHHHHHHHHHHhC
Q 027065 132 NVRIILLGRNHGKGEAIRKGMLHSR-GELLLMLDADGATKVT-------DLEKLESQIHAVG 185 (229)
Q Consensus 132 ~i~vi~~~~~~gk~~a~n~gl~~a~-~d~v~~lD~D~~~~~~-------~l~~l~~~~~~~~ 185 (229)
++.++..++..|.++|+-.+..... .+++++. +|..++++ .+.++++...+..
T Consensus 98 ~i~~~~q~~~lGtg~al~~a~~~l~~~~fvvi~-gD~l~~~~~~~~~~~dl~~li~~h~~~~ 158 (297)
T PRK10122 98 TIMNVRQGQPLGLGHSILCARPAIGDNPFVVVL-PDVVIDDASADPLRYNLAAMIARFNETG 158 (297)
T ss_pred eEEEeecCCcCchHHHHHHHHHHcCCCCEEEEE-CCeeccCccccccchhHHHHHHHHHHhC
Confidence 4666777778999999999998874 4677666 77777543 5788888765544
No 201
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=70.48 E-value=30 Score=29.95 Aligned_cols=50 Identities=14% Similarity=0.112 Sum_probs=39.7
Q ss_pred cEEEEEcCC-CCCHHHHHHHHHHhcCCCEEEEEcCCCCC-ChhhHHHHHHHH
Q 027065 132 NVRIILLGR-NHGKGEAIRKGMLHSRGELLLMLDADGAT-KVTDLEKLESQI 181 (229)
Q Consensus 132 ~i~vi~~~~-~~gk~~a~n~gl~~a~~d~v~~lD~D~~~-~~~~l~~l~~~~ 181 (229)
+++++.... ..|...++..|++.+..+.++++=+|..+ +++.+++++...
T Consensus 233 ~v~~i~d~~~~~Gpl~gi~~al~~~~~~~~lv~~~DmP~i~~~~i~~L~~~~ 284 (369)
T PRK14490 233 GIPLITDSYLDIGPLGGLLSAQRHHPDAAWLVVACDLPFLDEATLQQLVEGR 284 (369)
T ss_pred CCcEEeCCCCCCCcHHHHHHHHHhCCCCcEEEEeCCcCCCCHHHHHHHHHhc
Confidence 466666543 46877888899988888888999999876 888999998875
No 202
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=70.39 E-value=47 Score=25.56 Aligned_cols=82 Identities=17% Similarity=0.099 Sum_probs=48.2
Q ss_pred CCceEEEEEECCCCcchHHHHHHHHHHcCCCc-EEEEEcCCCCCHHHHHHHHHHhc--CC-CEEEEEcCCCCCChhhHHH
Q 027065 101 SFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDN-VRIILLGRNHGKGEAIRKGMLHS--RG-ELLLMLDADGATKVTDLEK 176 (229)
Q Consensus 101 ~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~-i~vi~~~~~~gk~~a~n~gl~~a--~~-d~v~~lD~D~~~~~~~l~~ 176 (229)
..++|++=..||.+....+....+........ -+.+ .+...|-..+--.+++.+ ++ ++++++.+|..+.+++.+.
T Consensus 27 ~~~~e~~~Avdg~~l~~~~~~~~~~~~~~~~~~~~~l-t~gEiGC~lSH~~~w~~~v~~~~~~~lIlEDDv~~~~~f~~~ 105 (200)
T PF01755_consen 27 GINFEFFDAVDGRDLSEDELFRRYDPELFKKRYGRPL-TPGEIGCALSHIKAWQRIVDSGLEYALILEDDVIFDPDFKEF 105 (200)
T ss_pred CCceEEEEeecccccchHHHHHHhhhhhhhccccccC-CcceEeehhhHHHHHHHHHHcCCCeEEEEeccccccccHHHH
Confidence 44799999999987766444443322221000 0111 223455444444444433 34 9999999999999997666
Q ss_pred HHHHHHH
Q 027065 177 LESQIHA 183 (229)
Q Consensus 177 l~~~~~~ 183 (229)
+......
T Consensus 106 l~~~~~~ 112 (200)
T PF01755_consen 106 LEEILSH 112 (200)
T ss_pred HHHHHhh
Confidence 5554444
No 203
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=69.40 E-value=72 Score=27.26 Aligned_cols=106 Identities=17% Similarity=0.123 Sum_probs=65.7
Q ss_pred ceEEEEEeecCC-CCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC----
Q 027065 66 KYISLIIPAFNE-EHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR---- 140 (229)
Q Consensus 66 p~vsviip~~ne-~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~---- 140 (229)
..+.|+..+=+. ...+..++.|++.. .+...+.+.|++|+-+++..+.++++...++ ..+.++..+.
T Consensus 24 ~~i~Iv~~~D~ny~~~~~vsi~Sil~n-------n~~~~~~f~Il~~~is~e~~~~l~~l~~~~~-~~i~~~~id~~~~~ 95 (334)
T PRK15171 24 NSLDIAYGIDKNFLFGCGVSIASVLLN-------NPDKSLVFHVFTDYISDADKQRFSALAKQYN-TRINIYLINCERLK 95 (334)
T ss_pred CceeEEEECcHhhHHHHHHHHHHHHHh-------CCCCCEEEEEEeCCCCHHHHHHHHHHHHhcC-CeEEEEEeCHHHHh
Confidence 347777666322 25666777777652 1234689999999999999889988888875 2566554321
Q ss_pred ------CCCHHHHHHHHH-Hhc--CCCEEEEEcCCCCCChhhHHHHHHH
Q 027065 141 ------NHGKGEAIRKGM-LHS--RGELLLMLDADGATKVTDLEKLESQ 180 (229)
Q Consensus 141 ------~~gk~~a~n~gl-~~a--~~d~v~~lD~D~~~~~~~l~~l~~~ 180 (229)
+...+.=...-+ +.- .-|-|+.+|+|..+.. .|.++.+.
T Consensus 96 ~~~~~~~~s~atY~Rl~ip~llp~~~dkvLYLD~Diiv~~-dl~~L~~~ 143 (334)
T PRK15171 96 SLPSTKNWTYATYFRFIIADYFIDKTDKVLYLDADIACKG-SIKELIDL 143 (334)
T ss_pred CCcccCcCCHHHHHHHHHHHhhhhhcCEEEEeeCCEEecC-CHHHHHhc
Confidence 111211112122 222 4689999999998865 45555543
No 204
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=67.75 E-value=75 Score=26.86 Aligned_cols=108 Identities=13% Similarity=0.013 Sum_probs=59.5
Q ss_pred EEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECC-CCcchHHHHHHHHHHcCC---CcEEEEEcCCCC-
Q 027065 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDG-SSDGTKRVAFDFVRKYTV---DNVRIILLGRNH- 142 (229)
Q Consensus 68 vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~-s~d~t~~~~~~~~~~~~~---~~i~vi~~~~~~- 142 (229)
++|+....+ .+.+..+|.|++. ....++++.|+.|. ..+...+.++++...+.. -.+..+..+...
T Consensus 3 ~~vv~~g~~-~~~~~~~lkSil~--------~n~~~l~Fhi~~d~~~~~~~~~~l~~~~~~~~~~i~~~i~~I~~P~~~~ 73 (304)
T cd06430 3 LAVVACGER-LEETLTMLKSAIV--------FSQKPLRFHIFAEDQLKQSFKEKLDDWPELIDRKFNYTLHPITFPSGNA 73 (304)
T ss_pred EEEEEcCCc-HHHHHHHHHHHHH--------hCCCCEEEEEEECCccCHHHHHHHHHHHHhccceeeeEEEEEecCccch
Confidence 555555555 3444555555544 23457888888887 677777778888555431 022333333211
Q ss_pred -C-----H-HHHHHHHH-Hhc-CCCEEEEEcCCCCCChhhHHHHHHHHHHhC
Q 027065 143 -G-----K-GEAIRKGM-LHS-RGELLLMLDADGATKVTDLEKLESQIHAVG 185 (229)
Q Consensus 143 -g-----k-~~a~n~gl-~~a-~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~ 185 (229)
+ + ..-...-+ +.- .-|-++.+|+|..+.. -+.++.+.+.+-.
T Consensus 74 ~~ws~l~~~~~y~RL~ip~lLp~~dkvLYLD~Dii~~~-dI~eL~~~~~df~ 124 (304)
T cd06430 74 AEWKKLFKPCAAQRLFLPSLLPDVDSLLYVDTDILFLR-PVEEIWSFLKKFN 124 (304)
T ss_pred hhhhhcccHHHHHHHHHHHHhhhhceEEEeccceeecC-CHHHHHHHHhhcC
Confidence 1 1 11111111 111 3488999999998854 4677777665433
No 205
>PLN03183 acetylglucosaminyltransferase family protein; Provisional
Probab=65.95 E-value=97 Score=27.51 Aligned_cols=95 Identities=16% Similarity=0.080 Sum_probs=52.2
Q ss_pred CCCCceEEEEEeec-CCCCChHHHHHHHHHHHHHhhhhcCCCceEEEE-EECCCCcchHHHHHHHHH------HcCCCcE
Q 027065 62 DPAEKYISLIIPAF-NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLI-IDDGSSDGTKRVAFDFVR------KYTVDNV 133 (229)
Q Consensus 62 ~~~~p~vsviip~~-ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiiv-vdd~s~d~t~~~~~~~~~------~~~~~~i 133 (229)
.+..|++.-+|.++ ++.+.+ +.++..++ ++...++| +|-.|++.-...+....+ .++ ++
T Consensus 74 ~~~~~r~AYLI~~h~~d~~~l----~RLL~aLY-------hprN~y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~--NV 140 (421)
T PLN03183 74 QDKLPRFAYLVSGSKGDLEKL----WRTLRALY-------HPRNQYVVHLDLESPAEERLELASRVENDPMFSKVG--NV 140 (421)
T ss_pred CCCCCeEEEEEEecCCcHHHH----HHHHHHhc-------CCCceEEEEecCCCChHHHHHHHHHhhccchhhccC--cE
Confidence 34578999999998 554444 44444443 12334444 566666553333333322 344 78
Q ss_pred EEEEcCC---CCCH--HHHHH----HHHHhc-CCCEEEEEcCCCCC
Q 027065 134 RIILLGR---NHGK--GEAIR----KGMLHS-RGELLLMLDADGAT 169 (229)
Q Consensus 134 ~vi~~~~---~~gk--~~a~n----~gl~~a-~~d~v~~lD~D~~~ 169 (229)
.++.... +.|. ..|-= ..++.+ ..||+..+.+.|.+
T Consensus 141 ~vl~k~~~V~WGG~S~V~AtL~~m~~LL~~~~~WDyfinLSGsDyP 186 (421)
T PLN03183 141 YMITKANLVTYRGPTMVANTLHACAILLKRSKDWDWFINLSASDYP 186 (421)
T ss_pred EEEecceeeccCChHHHHHHHHHHHHHHhhCCCCCEEEEccCCccc
Confidence 8876432 2332 22222 233332 45999999998887
No 206
>KOG3917 consensus Beta-1,4-galactosyltransferase B4GALT7/SQV-3 [Carbohydrate transport and metabolism]
Probab=65.64 E-value=23 Score=28.51 Aligned_cols=78 Identities=13% Similarity=0.268 Sum_probs=45.6
Q ss_pred CCCCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCC
Q 027065 62 DPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRN 141 (229)
Q Consensus 62 ~~~~p~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~ 141 (229)
..+.-++.|++|.+..-+.+.+.+-.+..-+.++ ....+|+|++. .| ++ +
T Consensus 70 ~aS~HklavlVPfRdRfEELl~FvPHM~~FL~rq-----~v~HHI~vlNQ--vD----------------~f-------R 119 (310)
T KOG3917|consen 70 GASYHKLAVLVPFRDRFEELLEFVPHMSKFLHRQ-----NVSHHILVLNQ--VD----------------PF-------R 119 (310)
T ss_pred CccceeEEEEechHHHHHHHHHhhHHHHHHHhhc-----CcceEEEEeec--cC----------------cc-------e
Confidence 3455689999999876544444333333333332 12334444432 11 11 2
Q ss_pred CCHHHHHHHHHHhcC--CCEEEEEcCCCCC
Q 027065 142 HGKGEAIRKGMLHSR--GELLLMLDADGAT 169 (229)
Q Consensus 142 ~gk~~a~n~gl~~a~--~d~v~~lD~D~~~ 169 (229)
...+.-+|.|+..|. .||++.-|.|-.+
T Consensus 120 FNRAsLINVGf~eas~~~DYiaMhDVDLLP 149 (310)
T KOG3917|consen 120 FNRASLINVGFNEASRLCDYIAMHDVDLLP 149 (310)
T ss_pred echhhheecchhhhcchhceeeeccccccc
Confidence 445667788888775 6999999998764
No 207
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=64.55 E-value=11 Score=34.44 Aligned_cols=108 Identities=13% Similarity=0.143 Sum_probs=74.9
Q ss_pred CceEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcC--CCcEEEEEcCCCC
Q 027065 65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYT--VDNVRIILLGRNH 142 (229)
Q Consensus 65 ~p~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~--~~~i~vi~~~~~~ 142 (229)
...++||+-+|..++++-..|+.+.. .+| --.||||=|+..|...+. .+| ...+.+++.++|
T Consensus 648 REQFTvVmLTYERe~VLm~sLeRL~g--------LPY-LnKvvVVWNspk~P~ddl------~WPdigvPv~viR~~~N- 711 (907)
T KOG2264|consen 648 REQFTVVMLTYEREAVLMGSLERLHG--------LPY-LNKVVVVWNSPKDPPDDL------TWPDIGVPVEVIRVAEN- 711 (907)
T ss_pred cceEEEEEEEehHHHHHHHHHHHhhC--------Ccc-cceEEEEeCCCCCChhcc------cCcCCCCceEEEEcccc-
Confidence 34799999999999888877777766 344 346777777766654322 233 235677887765
Q ss_pred CHHHHHHH---HHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHHhCCcceeec
Q 027065 143 GKGEAIRK---GMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHG 192 (229)
Q Consensus 143 gk~~a~n~---gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~ 192 (229)
++|. -+.....+-|+-+|+|.-+..+.+---.+-..++.|...++.
T Consensus 712 ----sLNNRFlPwd~IETEAvLS~DDDahLrhdEI~fgFRVWRE~RDRiVGFP 760 (907)
T KOG2264|consen 712 ----SLNNRFLPWDRIETEAVLSLDDDAHLRHDEIIFGFRVWRENRDRIVGFP 760 (907)
T ss_pred ----cccccccCchhhhheeeeecccchhhhhhheeeeeehhhhcccccccCC
Confidence 3443 335667899999999999888877666666777777666544
No 208
>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism]
Probab=63.35 E-value=56 Score=29.13 Aligned_cols=105 Identities=10% Similarity=0.082 Sum_probs=67.3
Q ss_pred eEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC---CCC
Q 027065 67 YISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR---NHG 143 (229)
Q Consensus 67 ~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~---~~g 143 (229)
.+..+..+|.+.+.+++.|+++.. +.+.=.+.||..|++.-...++++...++ ++.+..... ..|
T Consensus 104 ~~a~~~~v~kd~~~verll~aiYh----------PqN~ycihvD~~s~~~fk~~~~~L~~cf~--NV~v~~k~~~v~~~G 171 (439)
T KOG0799|consen 104 PAAFLRVVYKDYEQVERLLQAIYH----------PQNVYCIHVDAKSPPEFRVAMQQLASCFP--NVIVLPKRESVTYGG 171 (439)
T ss_pred ceEEEEeecccHHHHHHHHHHHhC----------CcCcceEEECCCCCHHHHHHHHHHHhcCC--ceEEeccccceecCC
Confidence 477788888887555555544444 22455678899999998888899999988 888886332 233
Q ss_pred --HHHHHHHHHH----hc-CCCEEEEEcCCCCC--ChhhHHHHHHHHHH
Q 027065 144 --KGEAIRKGML----HS-RGELLLMLDADGAT--KVTDLEKLESQIHA 183 (229)
Q Consensus 144 --k~~a~n~gl~----~a-~~d~v~~lD~D~~~--~~~~l~~l~~~~~~ 183 (229)
.-.|--.+++ .. +-+|++.+-+.|.+ +.+.+.++.+.+..
T Consensus 172 ~s~l~a~l~c~~~Ll~~~~~W~yfinLs~~D~PlkT~~elv~i~~~L~g 220 (439)
T KOG0799|consen 172 HSILAAHLNCLADLLKLSGDWDYFINLSNSDYPLKTNDELVRIFKILRG 220 (439)
T ss_pred chhhHHHHHHHHHHHhcCCCCceeeeccCCCcccCCHHHHHHHHHHcCC
Confidence 2233333333 21 25788777665554 56667777777743
No 209
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=63.08 E-value=1.1e+02 Score=27.20 Aligned_cols=54 Identities=24% Similarity=0.286 Sum_probs=42.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHhc-C-CC-EEEEEcCCCCC-ChhhHHHHHHHHHHhC
Q 027065 132 NVRIILLGRNHGKGEAIRKGMLHS-R-GE-LLLMLDADGAT-KVTDLEKLESQIHAVG 185 (229)
Q Consensus 132 ~i~vi~~~~~~gk~~a~n~gl~~a-~-~d-~v~~lD~D~~~-~~~~l~~l~~~~~~~~ 185 (229)
.+.++...+..|-++|.-.|.... . ++ .++++-+|..+ .++.|++|++.-....
T Consensus 68 ~v~~v~Q~eqlGTgHAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~ 125 (460)
T COG1207 68 DVEFVLQEEQLGTGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAHG 125 (460)
T ss_pred CceEEEecccCChHHHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhcC
Confidence 478888888999999999999876 3 33 67888888876 8888998887765433
No 210
>PF05045 RgpF: Rhamnan synthesis protein F; InterPro: IPR007739 This family consists of a group of proteins which are related to the Streptococcal rhamnose-glucose polysaccharide assembly protein (RgpF). Rhamnan backbones are found in several O-polysaccharides found in phytopathogenic bacteria and are regarded as pathogenic factors [].
Probab=62.71 E-value=25 Score=31.87 Aligned_cols=79 Identities=14% Similarity=0.237 Sum_probs=53.2
Q ss_pred EEEEECCC-CcchHHHHHHHHHHcCCCcEEEEEcCCCCC-HHHHHHHHHHhc------CCCEEEEEcCCCCCChhhHHHH
Q 027065 106 VLIIDDGS-SDGTKRVAFDFVRKYTVDNVRIILLGRNHG-KGEAIRKGMLHS------RGELLLMLDADGATKVTDLEKL 177 (229)
Q Consensus 106 iivvdd~s-~d~t~~~~~~~~~~~~~~~i~vi~~~~~~g-k~~a~n~gl~~a------~~d~v~~lD~D~~~~~~~l~~l 177 (229)
||+|.||. +++..+.+++++. .++.+ +|.| --+|...|+... +.|-|+++.+-+.-+-.-++.+
T Consensus 1 iv~VsN~~l~~~~~~~L~~~~~-------~vi~R-~N~GyDfgayk~gl~~~g~~~L~~~d~lil~NDS~~GP~~~l~~~ 72 (498)
T PF05045_consen 1 IVFVSNSPLSEEDREKLKDLCD-------KVIQR-ENEGYDFGAYKDGLEHLGWERLKDYDELILMNDSCFGPLFPLSEM 72 (498)
T ss_pred CEEEECCCCCHHHHHHHHHHHH-------HhEEe-ccCCcCHHHHHHHHHHcCchhhcCCCeEEEECCEEEeeCccHHHH
Confidence 46677765 5556677776543 34444 4878 567888888763 4688888887777666779999
Q ss_pred HHHHHHhCCcceeec
Q 027065 178 ESQIHAVGRKEYNHG 192 (229)
Q Consensus 178 ~~~~~~~~~~~~~~~ 192 (229)
.+.+++.....++..
T Consensus 73 f~~~~~~~~DfwGlT 87 (498)
T PF05045_consen 73 FERMEARDVDFWGLT 87 (498)
T ss_pred HHHhccCCCeEEeec
Confidence 999986544444433
No 211
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=62.44 E-value=8.9 Score=30.39 Aligned_cols=75 Identities=20% Similarity=0.046 Sum_probs=42.2
Q ss_pred CceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCC--------------CCHH--HHHHHHHHh-cCCCEEEEEc
Q 027065 102 FTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRN--------------HGKG--EAIRKGMLH-SRGELLLMLD 164 (229)
Q Consensus 102 ~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~--------------~gk~--~a~n~gl~~-a~~d~v~~lD 164 (229)
..+.+++++|+.+++..+.+++...+.. .+..+..... .... .++=...+. ...|-|+++|
T Consensus 29 ~~~~i~i~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~i~~ll~~~drilyLD 106 (250)
T PF01501_consen 29 SNLHIYIITDDISEEDFEKLRALAAEVI--EIEPIEFPDISMLEEFQFNSPSKRHFSPATFARLFIPDLLPDYDRILYLD 106 (250)
T ss_dssp SSEEEEEEESSS-HHHHHHHHHHSCCCC--TTECEEETSGGHHH--TTS-HCCTCGGGGGGGGGGHHHHSTTSSEEEEE-
T ss_pred ccceEEEecCCCCHHHHHHHhhhccccc--ceeeeccchHHhhhhhhhcccccccccHHHHHHhhhHHHHhhcCeEEEEc
Confidence 5788999999888777777776655543 2222222110 1111 111223344 5679999999
Q ss_pred CCCCCChhhHHHHHH
Q 027065 165 ADGATKVTDLEKLES 179 (229)
Q Consensus 165 ~D~~~~~~~l~~l~~ 179 (229)
+|..+-. .+.++.+
T Consensus 107 ~D~lv~~-dl~~lf~ 120 (250)
T PF01501_consen 107 ADTLVLG-DLDELFD 120 (250)
T ss_dssp TTEEESS--SHHHHC
T ss_pred CCeeeec-Chhhhhc
Confidence 9999844 4555554
No 212
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=60.06 E-value=22 Score=28.41 Aligned_cols=55 Identities=20% Similarity=0.261 Sum_probs=42.3
Q ss_pred EEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEc
Q 027065 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILL 138 (229)
Q Consensus 68 vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~ 138 (229)
=.|||+.+|++ .|+...+ -.+.+.-.++|-++.|...+.++.+.++|| ++.++.+
T Consensus 30 N~VIi~gR~e~-----~L~e~~~---------~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P--~lNvliN 84 (245)
T COG3967 30 NTVIICGRNEE-----RLAEAKA---------ENPEIHTEVCDVADRDSRRELVEWLKKEYP--NLNVLIN 84 (245)
T ss_pred CEEEEecCcHH-----HHHHHHh---------cCcchheeeecccchhhHHHHHHHHHhhCC--chheeee
Confidence 36788888885 2444444 234567788888889999999999999999 8888876
No 213
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=59.81 E-value=74 Score=24.05 Aligned_cols=53 Identities=15% Similarity=0.159 Sum_probs=37.1
Q ss_pred EEEEEcC-CCCCHHHHHHHHHHhc---CCCEEEEEcCCCCC-ChhhHHHHHHHHHHhC
Q 027065 133 VRIILLG-RNHGKGEAIRKGMLHS---RGELLLMLDADGAT-KVTDLEKLESQIHAVG 185 (229)
Q Consensus 133 i~vi~~~-~~~gk~~a~n~gl~~a---~~d~v~~lD~D~~~-~~~~l~~l~~~~~~~~ 185 (229)
++++... ...|...++-.|++.+ ..++++++=+|..+ +++.+.+++..+....
T Consensus 47 ~~~i~d~~~g~gpl~~~~~gl~~~~~~~~~~~lv~~~DmP~i~~~~i~~L~~~~~~~~ 104 (178)
T PRK00576 47 APVLRDELRGLGPLPATGRGLRAAAEAGARLAFVCAVDMPYLTVELIDDLARPAAQTD 104 (178)
T ss_pred CCEeccCCCCCCcHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCHHHHHHHHHHhhcCC
Confidence 4555432 2356666666667644 57999999999987 8888999998765443
No 214
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=59.68 E-value=68 Score=28.92 Aligned_cols=58 Identities=12% Similarity=0.220 Sum_probs=42.5
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcC
Q 027065 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG 139 (229)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~ 139 (229)
+|.+|.....+...|....+ -..+++|+|||..+.-+-...++.+....- +++++...
T Consensus 362 viltyg~s~vV~~ill~A~~---------~~k~frVvVVDSRP~~EG~~~lr~Lv~~Gi--nctYv~I~ 419 (556)
T KOG1467|consen 362 VLLTYGSSSVVNMILLEAKE---------LGKKFRVVVVDSRPNLEGRKLLRRLVDRGI--NCTYVLIN 419 (556)
T ss_pred EEEEecchHHHHHHHHHHHH---------hCcceEEEEEeCCCCcchHHHHHHHHHcCC--CeEEEEeh
Confidence 66778887666655555333 355899999999998888888998877754 67777654
No 215
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=59.33 E-value=81 Score=24.40 Aligned_cols=38 Identities=13% Similarity=0.111 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHHhcCCCEEEEEcCCCCC-ChhhHHHHH
Q 027065 141 NHGKGEAIRKGMLHSRGELLLMLDADGAT-KVTDLEKLE 178 (229)
Q Consensus 141 ~~gk~~a~n~gl~~a~~d~v~~lD~D~~~-~~~~l~~l~ 178 (229)
..|.-.++..++.....++++++=+|..+ +++.++++.
T Consensus 75 ~~gpl~gi~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~ 113 (196)
T PRK00560 75 LFSPLFGIINAFLTLQTPEIFFISVDTPFVSFESIKKLC 113 (196)
T ss_pred CCCcHHHHHHHHHhcCCCeEEEEecCcCcCCHHHHHHHH
Confidence 45666788888887888999999999976 888888884
No 216
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=58.12 E-value=71 Score=25.06 Aligned_cols=96 Identities=17% Similarity=0.115 Sum_probs=54.2
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHH--cCCCcEEEEEc--CCCCCHHH
Q 027065 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK--YTVDNVRIILL--GRNHGKGE 146 (229)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~--~~~~~i~vi~~--~~~~gk~~ 146 (229)
++|.-|. +.|..+++.+.+ ..--+|+|+-....+...+.+.+.... .....+.++.. .+..|-+.
T Consensus 25 llpv~g~-pli~~~l~~l~~----------~gi~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~Gta~ 93 (216)
T cd02507 25 LLPVANV-PLIDYTLEWLEK----------AGVEEVFVVCCEHSQAIIEHLLKSKWSSLSSKMIVDVITSDLCESAGDAL 93 (216)
T ss_pred cceECCE-EHHHHHHHHHHH----------CCCCeEEEEeCCcHHHHHHHHHhcccccccCCceEEEEEccCCCCCccHH
Confidence 4566565 667777776665 123467777664444333333221100 01112334333 34678888
Q ss_pred HHHHHHHhcCCCEEEEEcCCCCCChhhHHHHHH
Q 027065 147 AIRKGMLHSRGELLLMLDADGATKVTDLEKLES 179 (229)
Q Consensus 147 a~n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~ 179 (229)
++..+....+++ ++++.+|.....+ +..+++
T Consensus 94 ~l~~~~~~i~~d-flv~~gD~i~~~~-l~~~l~ 124 (216)
T cd02507 94 RLRDIRGLIRSD-FLLLSCDLVSNIP-LSELLE 124 (216)
T ss_pred HHHHHhhcCCCC-EEEEeCCEeecCC-HHHHHH
Confidence 888888777666 6679999876554 556664
No 217
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=57.06 E-value=70 Score=22.92 Aligned_cols=78 Identities=12% Similarity=0.097 Sum_probs=45.8
Q ss_pred CCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHhc--CCCEEEEEcCCCCC-ChhhHHHH
Q 027065 101 SFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS--RGELLLMLDADGAT-KVTDLEKL 177 (229)
Q Consensus 101 ~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n~gl~~a--~~d~v~~lD~D~~~-~~~~l~~l 177 (229)
....++++.-++..+.....-. .... .+.++... ..+.+.-++.+++.+ .++-|+++-+|+.- +++.|.+.
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~~~---~~~~--~~~~~~Q~-g~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~~~~l~~A 81 (122)
T PF09837_consen 8 ADGADVVLAYTPDGDHAAFRQL---WLPS--GFSFFPQQ-GGDLGERMANAFQQAARGYEPVVLIGSDCPDLTPDDLEQA 81 (122)
T ss_dssp TSSSEEEEEE----TTHHHHHH---HH-T--TSEEEE---SSSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--HHHHHHH
T ss_pred CCCcCEEEEEcCCccHHHHhcc---ccCC--CCEEeecC-CCCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHH
Confidence 3467888887777766543211 1112 46666653 456777778888776 56899999999984 88889998
Q ss_pred HHHHHHh
Q 027065 178 ESQIHAV 184 (229)
Q Consensus 178 ~~~~~~~ 184 (229)
.+.++++
T Consensus 82 ~~~L~~~ 88 (122)
T PF09837_consen 82 FEALQRH 88 (122)
T ss_dssp HHHTTT-
T ss_pred HHHhccC
Confidence 8888765
No 218
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=56.77 E-value=79 Score=27.18 Aligned_cols=101 Identities=17% Similarity=0.066 Sum_probs=56.8
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcC----CCcEEEE----EcCC--
Q 027065 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYT----VDNVRII----LLGR-- 140 (229)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~----~~~i~vi----~~~~-- 140 (229)
++|.-+....|+..|+++.+ ..--+|+|+-..-.+...+.+.+. .++. ...++++ ...+
T Consensus 28 llpv~gk~pli~~~l~~l~~----------~Gi~~i~iv~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~ 96 (380)
T PRK05293 28 AVPFGGKYRIIDFTLSNCAN----------SGIDTVGVLTQYQPLELNNHIGIG-SPWDLDRINGGVTILPPYSESEGGK 96 (380)
T ss_pred eeeeCCceeehhHHHHHHHh----------CCCCEEEEEecCCHHHHHHHHhCC-CcccccCCCCCEEEeCCcccCCCCc
Confidence 56666654567777777766 123477777653333222222210 1111 0124443 1122
Q ss_pred -CCCHHHHHHHHHHhcC---CCEEEEEcCCCCCChhhHHHHHHHHHH
Q 027065 141 -NHGKGEAIRKGMLHSR---GELLLMLDADGATKVTDLEKLESQIHA 183 (229)
Q Consensus 141 -~~gk~~a~n~gl~~a~---~d~v~~lD~D~~~~~~~l~~l~~~~~~ 183 (229)
..|.+.|+..+..... .+.++++.+|...+. .+.++++...+
T Consensus 97 ~~~Gta~al~~a~~~l~~~~~~~~lV~~gD~l~~~-d~~~ll~~h~~ 142 (380)
T PRK05293 97 WYKGTAHAIYQNIDYIDQYDPEYVLILSGDHIYKM-DYDKMLDYHKE 142 (380)
T ss_pred ccCCcHHHHHHHHHHHHhCCCCEEEEecCCEEEcC-CHHHHHHHHHh
Confidence 2688899988888764 478999999987655 45666665543
No 219
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=54.62 E-value=1.5e+02 Score=26.12 Aligned_cols=101 Identities=14% Similarity=0.131 Sum_probs=59.4
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCC------CcEEEEEc------
Q 027065 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTV------DNVRIILL------ 138 (229)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~------~~i~vi~~------ 138 (229)
++|.-+....|...|+++.+ ..--+|+|+-.-..+...+.+.+ .+.. ..+.++..
T Consensus 40 llpv~gkp~lI~~~l~~l~~----------~Gi~~i~vv~~~~~~~i~~~~~~---~~~~~~~~~~~~i~i~~~~~~~~~ 106 (425)
T PRK00725 40 AVYFGGKFRIIDFALSNCIN----------SGIRRIGVLTQYKAHSLIRHIQR---GWSFFREELGEFVDLLPAQQRVDE 106 (425)
T ss_pred eEEECCEEEEhHHHHHHHHH----------CCCCeEEEEecCCHHHHHHHHHh---hhcccccCCCCeEEEeCCcccCCC
Confidence 56666654466777777666 22357777776444444343332 1210 01222211
Q ss_pred -CCCCCHHHHHHHHHHhcC---CCEEEEEcCCCCCChhhHHHHHHHHHHhC
Q 027065 139 -GRNHGKGEAIRKGMLHSR---GELLLMLDADGATKVTDLEKLESQIHAVG 185 (229)
Q Consensus 139 -~~~~gk~~a~n~gl~~a~---~d~v~~lD~D~~~~~~~l~~l~~~~~~~~ 185 (229)
+...|.++|+-.+..... .+.++++.+|...+ ..+.++++...+..
T Consensus 107 e~~~lGTa~al~~a~~~l~~~~~d~~lVl~gD~l~~-~dl~~ll~~h~~~~ 156 (425)
T PRK00725 107 ENWYRGTADAVYQNLDIIRRYDPKYVVILAGDHIYK-MDYSRMLADHVESG 156 (425)
T ss_pred CccccCcHHHHHHHHHHHHhcCCCEEEEecCCeEec-cCHHHHHHHHHHcC
Confidence 113688889888887664 47899999998654 45788887665443
No 220
>PLN03153 hypothetical protein; Provisional
Probab=54.10 E-value=38 Score=30.79 Aligned_cols=44 Identities=14% Similarity=0.144 Sum_probs=30.6
Q ss_pred CCHHHHHHH------HHHh--cCCCEEEEEcCCCCCChhhHHHHHHHHHHhC
Q 027065 142 HGKGEAIRK------GMLH--SRGELLLMLDADGATKVTDLEKLESQIHAVG 185 (229)
Q Consensus 142 ~gk~~a~n~------gl~~--a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~ 185 (229)
.|...+++. .+.. -..+|++++|+|+.+..+-|.++++.++...
T Consensus 188 ~Gh~sa~rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptk 239 (537)
T PLN03153 188 TGHPSGLRISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYDPSE 239 (537)
T ss_pred CCcHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhhcCCCC
Confidence 465666554 2333 3569999999999998877777777775433
No 221
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=52.92 E-value=72 Score=27.17 Aligned_cols=101 Identities=18% Similarity=0.175 Sum_probs=57.7
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCC-----cEEEEEc------C
Q 027065 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVD-----NVRIILL------G 139 (229)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~-----~i~vi~~------~ 139 (229)
++|..+....++..|+++.+. .--||+|+-.-..+...+.+.+ .+... .++++.. +
T Consensus 23 llpv~g~~pli~~~l~~l~~~----------gi~~i~iv~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 89 (361)
T TIGR02091 23 AVPFGGKYRIIDFPLSNCINS----------GIRRIGVLTQYKSHSLNRHIQR---GWDFDGFIDGFVTLLPAQQRESGT 89 (361)
T ss_pred cceecceeeEeeehhhhhhhc----------CCceEEEEeccChHHHHHHHHh---ccCccCccCCCEEEeCCcccCCCC
Confidence 455555434566667776661 2347777766444444444332 22110 2343211 1
Q ss_pred -CCCCHHHHHHHHHHhcC---CCEEEEEcCCCCCChhhHHHHHHHHHHhC
Q 027065 140 -RNHGKGEAIRKGMLHSR---GELLLMLDADGATKVTDLEKLESQIHAVG 185 (229)
Q Consensus 140 -~~~gk~~a~n~gl~~a~---~d~v~~lD~D~~~~~~~l~~l~~~~~~~~ 185 (229)
...|.+.++..|+.... .+.++++.+|...+. .+.++++...+..
T Consensus 90 ~~~~Gt~~al~~a~~~~~~~~~~~~lv~~gD~l~~~-~l~~~l~~~~~~~ 138 (361)
T TIGR02091 90 DWYQGTADAVYQNLDLIEDYDPEYVLILSGDHIYKM-DYEKMLDYHIESG 138 (361)
T ss_pred ccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEcC-CHHHHHHHHHHcC
Confidence 12688888888887764 578899999987654 4777777665443
No 222
>TIGR03291 methan_mark_17 putative methanogenesis marker protein 17. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=51.42 E-value=1.1e+02 Score=23.72 Aligned_cols=93 Identities=10% Similarity=0.089 Sum_probs=51.8
Q ss_pred CCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHh-
Q 027065 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLH- 154 (229)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n~gl~~- 154 (229)
..+.++...|+-+-.+..+...+||. +++|++-.|. +...+-+. .+ +++.+ .......+-.++.+
T Consensus 79 ~dEtYlp~lL~~LW~kyGr~~V~QPd-R~~I~i~~~~--~~~~~~~~---------dl-vV~DP-~~~l~~~v~d~~~rI 144 (185)
T TIGR03291 79 ADETYLPDLLRKLWSSYGKDRVSQPD-RFEITIETPI--DEASEGIE---------DL-EVADP-RKDLKKKVYDFMFRV 144 (185)
T ss_pred eccchHHHHHHHHHHHhCcccccCCC-ceEEEecCCc--cccccchh---------cc-eEECc-hHHHHHHHHHHHHHh
Confidence 45678888888886655444444544 7887663222 11111111 11 22222 33333333333332
Q ss_pred -----------cCCCEEEEEcCCCCCChhhHHHHHHHHH
Q 027065 155 -----------SRGELLLMLDADGATKVTDLEKLESQIH 182 (229)
Q Consensus 155 -----------a~~d~v~~lD~D~~~~~~~l~~l~~~~~ 182 (229)
..+.-++|+-++..+.++|++...+.++
T Consensus 145 ~PEGFRVr~~~~~~~~fv~vASE~~l~~ewi~~a~~~~~ 183 (185)
T TIGR03291 145 FPEGFRVKRNAYEDNRFVFVASEETLEDEWIDEAFELID 183 (185)
T ss_pred CCCccEEeehhccCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 2356678999999999999998777654
No 223
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=49.28 E-value=97 Score=27.37 Aligned_cols=101 Identities=17% Similarity=0.240 Sum_probs=59.5
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCC----Cc-EEEEEcCC-----
Q 027065 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTV----DN-VRIILLGR----- 140 (229)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~----~~-i~vi~~~~----- 140 (229)
++|.-|...-|...|+++.+ ..--+|+|+-.-..+...+.+.+ .+.. .. +.+....+
T Consensus 28 Llpi~gk~plI~~~L~~l~~----------~Gi~~vivv~~~~~~~i~~~l~~---~~~~~~~~~g~~~i~~~~~~~~~~ 94 (429)
T PRK02862 28 AVPLAGKYRLIDIPISNCIN----------SGINKIYVLTQFNSASLNRHISQ---TYNFDGFSGGFVEVLAAQQTPENP 94 (429)
T ss_pred eeEECCeeEEeHHHHHHHHH----------CCCCEEEEEecCCHHHHHHHHhc---CcCccccCCCEEEEeCCcccCCCC
Confidence 66776765667777777766 22347777766433333333332 1110 01 22222111
Q ss_pred --CCCHHHHHHHHHHhcC---CCEEEEEcCCCCCChhhHHHHHHHHHHhC
Q 027065 141 --NHGKGEAIRKGMLHSR---GELLLMLDADGATKVTDLEKLESQIHAVG 185 (229)
Q Consensus 141 --~~gk~~a~n~gl~~a~---~d~v~~lD~D~~~~~~~l~~l~~~~~~~~ 185 (229)
..|.++|+..+..... .+.++++.+|... ...+..+++...+..
T Consensus 95 ~~~lGTa~al~~a~~~l~~~~~~~~lVl~gD~l~-~~dl~~ll~~h~~~~ 143 (429)
T PRK02862 95 SWFQGTADAVRKYLWHFQEWDVDEYLILSGDQLY-RMDYRLFVQHHRETG 143 (429)
T ss_pred ccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEE-eCCHHHHHHHHHHcC
Confidence 1688899988887653 3678999999965 456788888665443
No 224
>PF04724 Glyco_transf_17: Glycosyltransferase family 17; InterPro: IPR006813 This family represents beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase (2.4.1.144 from EC). This enzyme transfers the bisecting GlcNAc to the core mannose of complex N-glycans. The addition of this residue is regulated during development and has functional consequences for receptor signalling, cell adhesion, and tumour progression [, ].; GO: 0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0016020 membrane
Probab=48.39 E-value=1.7e+02 Score=25.28 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.7
Q ss_pred CCCEEEEEcCCCCCChhhHHHHH
Q 027065 156 RGELLLMLDADGATKVTDLEKLE 178 (229)
Q Consensus 156 ~~d~v~~lD~D~~~~~~~l~~l~ 178 (229)
.+|++++-|.|.++.|+.|..|-
T Consensus 178 ~dDliivSDvDEIP~p~~l~~Lr 200 (356)
T PF04724_consen 178 DDDLIIVSDVDEIPSPETLKFLR 200 (356)
T ss_pred CCCEEEEcCcccccCHHHHHHHH
Confidence 57999999999999999988774
No 225
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=47.88 E-value=76 Score=20.64 Aligned_cols=61 Identities=16% Similarity=0.289 Sum_probs=41.2
Q ss_pred ceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHhcCCCEEEEEcCCCC
Q 027065 103 TYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGA 168 (229)
Q Consensus 103 ~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n~gl~~a~~d~v~~lD~D~~ 168 (229)
..++.++-..|.|.. ++....+.+ .+..++...+.|-..|+...++..+..+-+.+-.|..
T Consensus 9 ~~~~~~lvS~s~DGe--~ia~~~~~~---G~~~iRGSs~rgg~~Alr~~~~~lk~G~~~~itpDGP 69 (74)
T PF04028_consen 9 RRKIAALVSRSRDGE--LIARVLERF---GFRTIRGSSSRGGARALREMLRALKEGYSIAITPDGP 69 (74)
T ss_pred CCCEEEEEccCcCHH--HHHHHHHHc---CCCeEEeCCCCcHHHHHHHHHHHHHCCCeEEEeCCCC
Confidence 466777777777753 334444444 4888888889999999999999887544444444443
No 226
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=47.03 E-value=2.5e+02 Score=26.44 Aligned_cols=74 Identities=11% Similarity=0.081 Sum_probs=43.2
Q ss_pred eEEEEEECCCCcc-hHHHHHHHHHHcCCCcEEEEEcCC---CCC-HH-HHHHHHHHhcCCCEEEEEcCCCCCChhhHHHH
Q 027065 104 YEVLIIDDGSSDG-TKRVAFDFVRKYTVDNVRIILLGR---NHG-KG-EAIRKGMLHSRGELLLMLDADGATKVTDLEKL 177 (229)
Q Consensus 104 ~eiivvdd~s~d~-t~~~~~~~~~~~~~~~i~vi~~~~---~~g-k~-~a~n~gl~~a~~d~v~~lD~D~~~~~~~l~~l 177 (229)
..+.++-..+.+. ..+.+++=.+.|. .+-.....+ |.. |. ..+..+....+.+|++-.|+|..+..+.|.+.
T Consensus 419 v~~rFvVG~s~n~~l~~~L~~Ea~~yg--DIIq~dF~DsY~NLTlKtl~~~~wa~~c~~akFilK~DDDvFVnv~~Ll~~ 496 (636)
T PLN03133 419 VAVRFFVGLHKNQMVNEELWNEARTYG--DIQLMPFVDYYSLITWKTLAICIFGTEVVSAKYVMKTDDDAFVRVDEVLAS 496 (636)
T ss_pred eEEEEEEecCCcHHHHHHHHHHHHHcC--CeEEEeeechhhhhHHHHHHHHHHHHhCCCceEEEEcCCceEEcHHHHHHH
Confidence 4555555444443 3344555456666 454444332 222 22 23344445557899999999999998876666
Q ss_pred HH
Q 027065 178 ES 179 (229)
Q Consensus 178 ~~ 179 (229)
++
T Consensus 497 L~ 498 (636)
T PLN03133 497 LK 498 (636)
T ss_pred HH
Confidence 64
No 227
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=46.40 E-value=1.4e+02 Score=26.01 Aligned_cols=100 Identities=13% Similarity=0.092 Sum_probs=58.7
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCC--CcEEEEEc-C--C-----
Q 027065 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTV--DNVRIILL-G--R----- 140 (229)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~--~~i~vi~~-~--~----- 140 (229)
++|.-+....|+-.|+++.+ ..--+|+++-....+...+.+. ..+.. ....++.. + +
T Consensus 30 llPv~gk~plI~~~L~~l~~----------~Gi~~i~iv~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (407)
T PRK00844 30 AVPFGGSYRLIDFVLSNLVN----------SGYLRIYVLTQYKSHSLDRHIS---QTWRLSGLLGNYITPVPAQQRLGKR 96 (407)
T ss_pred ceeeCCcceEhHHHHHHHHH----------CCCCEEEEEeccCHHHHHHHHH---hCcCccccCCCeEEECCcccCCCCC
Confidence 56666655567777777666 2245777777654444444443 22210 01222321 1 1
Q ss_pred -CCCHHHHHHHHHHhcC---CCEEEEEcCCCCCChhhHHHHHHHHHHh
Q 027065 141 -NHGKGEAIRKGMLHSR---GELLLMLDADGATKVTDLEKLESQIHAV 184 (229)
Q Consensus 141 -~~gk~~a~n~gl~~a~---~d~v~~lD~D~~~~~~~l~~l~~~~~~~ 184 (229)
..|.++|+..+..... .++++++.+|...+ ..+.++++...+.
T Consensus 97 ~~lGta~al~~a~~~i~~~~~~~~lv~~gD~v~~-~dl~~l~~~h~~~ 143 (407)
T PRK00844 97 WYLGSADAIYQSLNLIEDEDPDYVVVFGADHVYR-MDPRQMVDFHIES 143 (407)
T ss_pred cccCCHHHHHHHHHHHHhcCCCEEEEecCCEEEc-CCHHHHHHHHHhc
Confidence 3688889888887763 26899999998654 4567777755443
No 228
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=46.25 E-value=1.9e+02 Score=25.16 Aligned_cols=89 Identities=19% Similarity=0.185 Sum_probs=49.1
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHH-cCCCcEEEEEcCC--CCCHHHH
Q 027065 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK-YTVDNVRIILLGR--NHGKGEA 147 (229)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~-~~~~~i~vi~~~~--~~gk~~a 147 (229)
++|..+ .+-+...++.+... .-+++|+-. ... +.++++..+ ++ .++++..++ ..|.+++
T Consensus 24 Llpi~g-kPli~~~i~~l~~~-----------~~~i~Ivv~-~~~---~~i~~~~~~~~~--~v~~~~~~~~~~~gt~~a 85 (430)
T PRK14359 24 LHTICG-KPMLFYILKEAFAI-----------SDDVHVVLH-HQK---ERIKEAVLEYFP--GVIFHTQDLENYPGTGGA 85 (430)
T ss_pred eCEECC-ccHHHHHHHHHHHc-----------CCcEEEEEC-CCH---HHHHHHHHhcCC--ceEEEEecCccCCCcHHH
Confidence 445544 45566667666651 124555443 222 222333333 33 577776543 3566666
Q ss_pred HHHHHHhcCCCEEEEEcCCCC-CChhhHHHHHH
Q 027065 148 IRKGMLHSRGELLLMLDADGA-TKVTDLEKLES 179 (229)
Q Consensus 148 ~n~gl~~a~~d~v~~lD~D~~-~~~~~l~~l~~ 179 (229)
+..+ ....|.++++++|.. ..++.++++.+
T Consensus 86 l~~~--~~~~d~vlv~~gD~p~~~~~~l~~l~~ 116 (430)
T PRK14359 86 LMGI--EPKHERVLILNGDMPLVEKDELEKLLE 116 (430)
T ss_pred Hhhc--ccCCCeEEEEECCccCCCHHHHHHHHh
Confidence 6542 224689999999984 57777776653
No 229
>KOG4179 consensus Lysyl hydrolase/glycosyltransferase family 25 [Posttranslational modification, protein turnover, chaperones]
Probab=46.12 E-value=1.1e+02 Score=27.09 Aligned_cols=78 Identities=15% Similarity=0.098 Sum_probs=44.3
Q ss_pred ceEEEEEECCCCcchHHHHHHHHHHcCCC--cEEEEEcCC------CCC------H-----HHHHHHHHHhcC---CCEE
Q 027065 103 TYEVLIIDDGSSDGTKRVAFDFVRKYTVD--NVRIILLGR------NHG------K-----GEAIRKGMLHSR---GELL 160 (229)
Q Consensus 103 ~~eiivvdd~s~d~t~~~~~~~~~~~~~~--~i~vi~~~~------~~g------k-----~~a~n~gl~~a~---~d~v 160 (229)
..-|.+-.|.+.|.+.+.++++.+..... .+.+-...+ ..| . ..-...|++.++ .||+
T Consensus 34 r~aiw~~~dh~~d~~ie~freWL~nv~~~y~~V~~e~~~e~~s~~d~~~pk~W~~sr~q~lm~lKeea~~~~r~~~adyi 113 (568)
T KOG4179|consen 34 RPAIWIGVDHEHDHAIEYFREWLENVGDLYHRVKWEPFIEPKSYPDEHGPKHWPDSRFQHLMSLKEEALNWARSGWADYI 113 (568)
T ss_pred ccceEEecCccccchHHHHHHHHHhcCCccceeEEEecCCccccCcccCCccCchHHHHHHHHHHHHHHHHHHhhhccee
Confidence 44567777778888888888877664421 222221111 011 0 011233444443 5999
Q ss_pred EEEcCCCCC-ChhhHHHHHHH
Q 027065 161 LMLDADGAT-KVTDLEKLESQ 180 (229)
Q Consensus 161 ~~lD~D~~~-~~~~l~~l~~~ 180 (229)
+|.|.|+.+ +++.|.-+++.
T Consensus 114 lf~d~d~lLts~dTl~llm~l 134 (568)
T KOG4179|consen 114 LFKDEDNLLTSGDTLPLLMNL 134 (568)
T ss_pred EEeehhheeeCCchHhHHHhc
Confidence 999999998 55556555443
No 230
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=45.05 E-value=1e+02 Score=21.32 Aligned_cols=29 Identities=17% Similarity=0.347 Sum_probs=19.6
Q ss_pred CCceEEEEE-ECCCCcchHHHHHHHHHHcCCC
Q 027065 101 SFTYEVLII-DDGSSDGTKRVAFDFVRKYTVD 131 (229)
Q Consensus 101 ~~~~eiivv-dd~s~d~t~~~~~~~~~~~~~~ 131 (229)
.++...|+| |+|-.| .++-.++++++|..
T Consensus 62 fP~~kfiLIGDsgq~D--peiY~~ia~~~P~~ 91 (100)
T PF09949_consen 62 FPERKFILIGDSGQHD--PEIYAEIARRFPGR 91 (100)
T ss_pred CCCCcEEEEeeCCCcC--HHHHHHHHHHCCCC
Confidence 455565555 554455 78888999999943
No 231
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=44.64 E-value=99 Score=21.05 Aligned_cols=49 Identities=16% Similarity=0.053 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCceEEEEEECCC--CcchHHHHHHHHHHcCCCcEEEEEcC
Q 027065 81 LPGALDETLNYLQQRAAKDKSFTYEVLIIDDGS--SDGTKRVAFDFVRKYTVDNVRIILLG 139 (229)
Q Consensus 81 l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s--~d~t~~~~~~~~~~~~~~~i~vi~~~ 139 (229)
+.+.|+.+++.+ ..++++++..|++ .+++.+.++++++-.+ .+++...+
T Consensus 6 ~~~qL~~~f~~l--------~~pV~l~~f~~~~~~~~e~~~ll~e~a~lSd--kI~~~~~~ 56 (94)
T cd02974 6 LKQQLKAYLERL--------ENPVELVASLDDSEKSAELLELLEEIASLSD--KITLEEDN 56 (94)
T ss_pred HHHHHHHHHHhC--------CCCEEEEEEeCCCcchHHHHHHHHHHHHhCC--ceEEEEec
Confidence 556667777643 3378887776543 3456677777777666 77775543
No 232
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=44.34 E-value=16 Score=29.88 Aligned_cols=35 Identities=20% Similarity=0.189 Sum_probs=25.9
Q ss_pred cCCCEEEEEcCCCCCChhhHHHHHHHHHHhCCcce
Q 027065 155 SRGELLLMLDADGATKVTDLEKLESQIHAVGRKEY 189 (229)
Q Consensus 155 a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~ 189 (229)
...+|.+++|+|+.+..+-|.+++..+....+.-+
T Consensus 85 ~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yi 119 (252)
T PF02434_consen 85 SDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYI 119 (252)
T ss_dssp HT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EE
T ss_pred CCceEEEEEeCCceecHHHHHHHHhhCCCccCEEe
Confidence 45699999999999999999999998876655443
No 233
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=40.60 E-value=1.8e+02 Score=22.84 Aligned_cols=38 Identities=11% Similarity=0.092 Sum_probs=21.1
Q ss_pred hcCCCEEEEEcCCC-CCChhhHHHHHHHHHHhCCcceee
Q 027065 154 HSRGELLLMLDADG-ATKVTDLEKLESQIHAVGRKEYNH 191 (229)
Q Consensus 154 ~a~~d~v~~lD~D~-~~~~~~l~~l~~~~~~~~~~~~~~ 191 (229)
..+.|.|++..... .++++..+.+.+.++++...+..+
T Consensus 50 L~~~Dvvv~~~~~~~~l~~~~~~al~~~v~~Ggglv~lH 88 (217)
T PF06283_consen 50 LKGYDVVVFYNTGGDELTDEQRAALRDYVENGGGLVGLH 88 (217)
T ss_dssp HCT-SEEEEE-SSCCGS-HHHHHHHHHHHHTT-EEEEEG
T ss_pred hcCCCEEEEECCCCCcCCHHHHHHHHHHHHcCCCEEEEc
Confidence 34566666666653 466677777777777666555555
No 234
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=39.17 E-value=3e+02 Score=24.96 Aligned_cols=89 Identities=16% Similarity=0.114 Sum_probs=52.6
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 027065 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (229)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n~ 150 (229)
++|..+....++.+++.+... ..-+.+||.+ +.-...+++-....+...-+++..|..++.+.|+-.
T Consensus 31 ~l~l~~~~sllq~t~~r~~~~----------~~~~~iivt~---~~~~~~v~~ql~~~~~~~~~ii~EP~~rnTApaial 97 (478)
T PRK15460 31 FLCLKGDLTMLQTTICRLNGV----------ECESPVVICN---EQHRFIVAEQLRQLNKLTENIILEPAGRNTAPAIAL 97 (478)
T ss_pred eeECCCCCCHHHHHHHHHHhC----------CCCCcEEEeC---HHHHHHHHHHHHhcCCccccEEecCCCCChHHHHHH
Confidence 567777777788888876551 1224445532 333344444444443112367777777777777665
Q ss_pred HHHhc--C----CCEEEEEcCCCCCChh
Q 027065 151 GMLHS--R----GELLLMLDADGATKVT 172 (229)
Q Consensus 151 gl~~a--~----~d~v~~lD~D~~~~~~ 172 (229)
|...+ + .+.++++-+|..+.+.
T Consensus 98 aa~~~~~~~~~~~~~v~vlPaDH~I~d~ 125 (478)
T PRK15460 98 AALAAKRHSPESDPLMLVLAADHVIADE 125 (478)
T ss_pred HHHHHHHhcCCCCCeEEEeccccccCCH
Confidence 55443 1 3589999999998653
No 235
>KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism]
Probab=38.23 E-value=93 Score=25.85 Aligned_cols=67 Identities=12% Similarity=0.199 Sum_probs=39.2
Q ss_pred CCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEc
Q 027065 64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILL 138 (229)
Q Consensus 64 ~~p~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~ 138 (229)
+.-.+++|+.|+|.+. .+.+.+++.+... .....++++.||=..-.......+++..+++ ++.++..
T Consensus 29 e~~~ltl~ltcR~~~k-----ae~vc~~lk~f~p-~~~i~~~yvlvD~sNm~Sv~~A~~di~~rf~--~ld~iyl 95 (341)
T KOG1478|consen 29 ENVRLTLCLTCRNMSK-----AEAVCAALKAFHP-KSTIEVTYVLVDVSNMQSVFRASKDIKQRFQ--RLDYIYL 95 (341)
T ss_pred CceeEEEEEEeCChhH-----HHHHHHHHHHhCC-CceeEEEEEEEehhhHHHHHHHHHHHHHHhh--hccEEEE
Confidence 4456999999999874 2333344443211 1133567777766443444456677778887 5655554
No 236
>PF05045 RgpF: Rhamnan synthesis protein F; InterPro: IPR007739 This family consists of a group of proteins which are related to the Streptococcal rhamnose-glucose polysaccharide assembly protein (RgpF). Rhamnan backbones are found in several O-polysaccharides found in phytopathogenic bacteria and are regarded as pathogenic factors [].
Probab=37.88 E-value=3.2e+02 Score=24.91 Aligned_cols=117 Identities=19% Similarity=0.271 Sum_probs=69.3
Q ss_pred CCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCC-CcEEEEEcCCCC
Q 027065 64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTV-DNVRIILLGRNH 142 (229)
Q Consensus 64 ~~p~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~-~~i~vi~~~~~~ 142 (229)
..+++.|++=+|-.+ -+++.++.+.+ -...++++|--+. ++-.+.+++...+.+. +++.|... +|+
T Consensus 263 ~~~kiav~lHv~Y~D-Ll~E~l~~l~~---------~p~~~Dl~ITt~~--~~~~~~i~~~l~~~~~~~~~~v~vv-~Nr 329 (498)
T PF05045_consen 263 SKKKIAVHLHVFYPD-LLEEILDYLAN---------IPFPYDLFITTDS--EEKKEEIEEILAKRPGFKNAEVRVV-ENR 329 (498)
T ss_pred CCCcEEEEEEEEcHh-hHHHHHHHHHh---------CCCCeEEEEECCc--hhhHHHHHHHHHhccCCCceEEEEe-CCC
Confidence 456788888888764 33444444333 3457888887442 2334555555544442 35666666 477
Q ss_pred CHH-HHH----HHHHHhcCCCEEEEEcCCCCC--------------------ChhhHHHHHHHHHHhCCcceeecc
Q 027065 143 GKG-EAI----RKGMLHSRGELLLMLDADGAT--------------------KVTDLEKLESQIHAVGRKEYNHGD 193 (229)
Q Consensus 143 gk~-~a~----n~gl~~a~~d~v~~lD~D~~~--------------------~~~~l~~l~~~~~~~~~~~~~~~~ 193 (229)
|.- +++ ...+...++|+|+.+.+--.. +++.+.++++.|+++++.+++..+
T Consensus 330 GRDi~pfLv~~~~~l~~~~YD~v~~~HtKKS~~~~~~~g~~wr~~l~~~LL~s~~~v~~Il~~F~~~p~lGlv~P~ 405 (498)
T PF05045_consen 330 GRDILPFLVGLKDELLDSKYDYVCHLHTKKSPHNDRSDGDSWRRELLDNLLGSKEYVDNILSAFEDDPRLGLVIPD 405 (498)
T ss_pred CccHHHHHHHHHHHhccCCccEEEEEEcccCcCcCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCceEEeCC
Confidence 722 222 233333578999998764432 235577778888888887776554
No 237
>COG2452 Predicted site-specific integrase-resolvase [DNA replication, recombination, and repair]
Probab=37.29 E-value=1.3e+02 Score=23.57 Aligned_cols=50 Identities=8% Similarity=0.232 Sum_probs=31.2
Q ss_pred CceEEEEEeecCCCC--ChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHH
Q 027065 65 EKYISLIIPAFNEEH--RLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFV 125 (229)
Q Consensus 65 ~p~vsviip~~ne~~--~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~ 125 (229)
.+.|+.++.+|.... .--+.++.++. ..+.||+++|.+..++ .+.++++.
T Consensus 112 ~~~V~rVvV~ykDRL~RFGfe~le~~~~----------a~~~eivvv~~~e~~~-eELveDli 163 (193)
T COG2452 112 GNSVRRVVVSYKDRLNRFGFELVEAVCK----------AHNVEIVVVNQEDKDS-EELVEDLV 163 (193)
T ss_pred CCceeEEEEEccchHhHHhHHHHHHHHH----------hcCcEEEEecCCCCCH-HHHHHHHH
Confidence 457999999998762 12233333333 2378999998776554 56666553
No 238
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=37.12 E-value=1.7e+02 Score=22.57 Aligned_cols=26 Identities=23% Similarity=0.087 Sum_probs=10.9
Q ss_pred cchHHHHHHHHHHcCCCcEEEEEcCCCCC
Q 027065 115 DGTKRVAFDFVRKYTVDNVRIILLGRNHG 143 (229)
Q Consensus 115 d~t~~~~~~~~~~~~~~~i~vi~~~~~~g 143 (229)
+.+.+.+++.+..- .+-++..|...|
T Consensus 35 ~~~i~~i~~~~~~r---gVIIfTDpD~~G 60 (174)
T TIGR00334 35 DETINLIKKAQKKQ---GVIILTDPDFPG 60 (174)
T ss_pred HHHHHHHHHHhhcC---CEEEEeCCCCch
Confidence 34444444443322 345555443333
No 239
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=36.36 E-value=2.2e+02 Score=22.72 Aligned_cols=93 Identities=14% Similarity=0.163 Sum_probs=58.6
Q ss_pred CCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHhc
Q 027065 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS 155 (229)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n~gl~~a 155 (229)
+....+..+|+.+.+ ...--+|++|-... -.+.++++... . .++++... .........|++..
T Consensus 26 ~Gkpvl~~tl~~f~~---------~~~i~~Ivvv~~~~---~~~~~~~~~~~-~--~v~iv~GG--~tR~~SV~ngL~~l 88 (221)
T PF01128_consen 26 GGKPVLEYTLEAFLA---------SPEIDEIVVVVPPE---DIDYVEELLSK-K--KVKIVEGG--ATRQESVYNGLKAL 88 (221)
T ss_dssp TTEEHHHHHHHHHHT---------TTTESEEEEEESGG---GHHHHHHHHHH-T--TEEEEE----SSHHHHHHHHHHCH
T ss_pred CCeEeHHHHHHHHhc---------CCCCCeEEEEecch---hHHHHHHhhcC-C--CEEEecCC--hhHHHHHHHHHHHH
Confidence 344566777777665 23345677775433 23344454444 3 68877643 34566777788875
Q ss_pred C--CCEEEEEcCCC-CCChhhHHHHHHHHHHhC
Q 027065 156 R--GELLLMLDADG-ATKVTDLEKLESQIHAVG 185 (229)
Q Consensus 156 ~--~d~v~~lD~D~-~~~~~~l~~l~~~~~~~~ 185 (229)
. .|+|++-|+== .++++.+.++++.+.++.
T Consensus 89 ~~~~d~VlIHDaaRPfv~~~~i~~~i~~~~~~~ 121 (221)
T PF01128_consen 89 AEDCDIVLIHDAARPFVSPELIDRVIEAAREGH 121 (221)
T ss_dssp HCTSSEEEEEETTSTT--HHHHHHHHHHHHHTC
T ss_pred HcCCCEEEEEccccCCCCHHHHHHHHHHHHhhc
Confidence 4 37999999865 459999999999998733
No 240
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=36.26 E-value=1.9e+02 Score=21.78 Aligned_cols=83 Identities=16% Similarity=0.290 Sum_probs=42.8
Q ss_pred eEEEEEECCCCcchHHHHHHHHHHcC-CCcEEEEEcCCCC-CHHHHHHHHH-------H-h-cCCCEEEEEcCCCC-CCh
Q 027065 104 YEVLIIDDGSSDGTKRVAFDFVRKYT-VDNVRIILLGRNH-GKGEAIRKGM-------L-H-SRGELLLMLDADGA-TKV 171 (229)
Q Consensus 104 ~eiivvdd~s~d~t~~~~~~~~~~~~-~~~i~vi~~~~~~-gk~~a~n~gl-------~-~-a~~d~v~~lD~D~~-~~~ 171 (229)
++|+.|---.+....+.+++|.++.+ ..++.++..++.. ++........ . . ..+++++.+|-... ++.
T Consensus 3 i~i~~vGk~k~~~~~~~~~eY~kRl~~~~~~e~~e~~~~~~~~~~~~~~~~~~E~~~il~~i~~~~~~i~Ld~~Gk~~sS 82 (155)
T PF02590_consen 3 IRIIAVGKLKEKFLKELIEEYLKRLSRYAKLEIIELKEEKIAKAQSIEKIKEKEGERILKKIPPNDYVILLDERGKQLSS 82 (155)
T ss_dssp EEEEEESSS-SHHHHHHHHHHHHHHCTTSEEEEEEE------TCHHHHHHHHHHHHHHHCTSHTTSEEEEE-TTSEE--H
T ss_pred EEEEEEeccCcHHHHHHHHHHHHHcCccCceeEEEeccccccccccHHHHHHHHHHHHHhhccCCCEEEEEcCCCccCCh
Confidence 45566644444445666677766654 1245555554322 1122222111 1 1 25899999997665 578
Q ss_pred hhHHHHHHHHHHhCC
Q 027065 172 TDLEKLESQIHAVGR 186 (229)
Q Consensus 172 ~~l~~l~~~~~~~~~ 186 (229)
..+.+.+..+.....
T Consensus 83 ~~fA~~l~~~~~~g~ 97 (155)
T PF02590_consen 83 EEFAKKLERWMNQGK 97 (155)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcCC
Confidence 888888888776553
No 241
>TIGR00140 hupD hydrogenase expression/formation protein. C at 64 and 67 are believed to be metal binding. Postulated to be involved in processing or hydrogenase. Superfamily suggests that it is a peptidase/protease.
Probab=35.96 E-value=1.5e+02 Score=21.24 Aligned_cols=41 Identities=24% Similarity=0.357 Sum_probs=19.1
Q ss_pred HHHHHHHHcCC-CcEEEEEcCCCCCHHHHHHHHHHhcCCCEEEEEcC
Q 027065 120 VAFDFVRKYTV-DNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDA 165 (229)
Q Consensus 120 ~~~~~~~~~~~-~~i~vi~~~~~~gk~~a~n~gl~~a~~d~v~~lD~ 165 (229)
+++++.++++. +++.++.... ...+..-.....|.++|+|+
T Consensus 3 v~~~L~~~~~~~~~v~vid~gt-----~~~~l~~~l~~~d~viiVDA 44 (134)
T TIGR00140 3 LVEALQQRYAFPDNVTLLDGGT-----QGLYLLPLIESADRLIILDA 44 (134)
T ss_pred HHHHHHHhCCCCCCeEEEecCc-----cHHHHHHHHhcCCeEEEEec
Confidence 34444444432 2455554331 23333333445666777765
No 242
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=35.44 E-value=3.2e+02 Score=24.28 Aligned_cols=90 Identities=16% Similarity=0.138 Sum_probs=57.2
Q ss_pred CCCceEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCC
Q 027065 63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNH 142 (229)
Q Consensus 63 ~~~p~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~ 142 (229)
+..|.|.+--....|-. .+..+++.+.+ .+|...+++- ..|+...+.+++. ++ +.+.+...| .
T Consensus 47 ~~~p~vWiHaaSVGEv~----a~~pLv~~l~~-----~~P~~~ilvT--t~T~Tg~e~a~~~---~~-~~v~h~YlP--~ 109 (419)
T COG1519 47 PEGPLVWIHAASVGEVL----AALPLVRALRE-----RFPDLRILVT--TMTPTGAERAAAL---FG-DSVIHQYLP--L 109 (419)
T ss_pred CCCCeEEEEecchhHHH----HHHHHHHHHHH-----hCCCCCEEEE--ecCccHHHHHHHH---cC-CCeEEEecC--c
Confidence 45577999888888864 44455555443 3556666554 2344445555544 33 134444443 3
Q ss_pred CHHHHHHHHHHhcCCCEEEEEcCCCCC
Q 027065 143 GKGEAIRKGMLHSRGELLLMLDADGAT 169 (229)
Q Consensus 143 gk~~a~n~gl~~a~~d~v~~lD~D~~~ 169 (229)
-...+.+.=++.-+-+.++++.++.++
T Consensus 110 D~~~~v~rFl~~~~P~l~Ii~EtElWP 136 (419)
T COG1519 110 DLPIAVRRFLRKWRPKLLIIMETELWP 136 (419)
T ss_pred CchHHHHHHHHhcCCCEEEEEeccccH
Confidence 446678888889999999999999983
No 243
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=35.38 E-value=1.5e+02 Score=22.38 Aligned_cols=61 Identities=18% Similarity=0.360 Sum_probs=37.9
Q ss_pred eEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcC
Q 027065 67 YISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG 139 (229)
Q Consensus 67 ~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~ 139 (229)
.|.||+-.....+..+.. ...+.+ -..++|+-||.- -.|.+.+.++.++.....++++.-.
T Consensus 4 ~V~IIMGS~SD~~~mk~A----a~~L~~-----fgi~ye~~VvSA---HRTPe~m~~ya~~a~~~g~~viIAg 64 (162)
T COG0041 4 KVGIIMGSKSDWDTMKKA----AEILEE-----FGVPYEVRVVSA---HRTPEKMFEYAEEAEERGVKVIIAG 64 (162)
T ss_pred eEEEEecCcchHHHHHHH----HHHHHH-----cCCCeEEEEEec---cCCHHHHHHHHHHHHHCCCeEEEec
Confidence 588888877776444443 333333 355899999955 4455556666555444478887753
No 244
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=34.39 E-value=2.5e+02 Score=22.73 Aligned_cols=99 Identities=7% Similarity=0.027 Sum_probs=61.7
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 027065 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (229)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n~ 150 (229)
+.|.- .+.-|+.+|+++..+ ..--++||. .|++++-..++.++.+.+ +.+++.++. .--.-.-.
T Consensus 22 LlpL~-~~pmI~~~lervrks---------~~~d~ivvA--TS~~~~d~~l~~~~~~~G---~~vfrGs~~-dVL~Rf~~ 85 (241)
T COG1861 22 LLPLG-GEPMIEYQLERVRKS---------KDLDKIVVA--TSDKEEDDALEEVCRSHG---FYVFRGSEE-DVLQRFII 85 (241)
T ss_pred hhhcC-CCchHHHHHHHHhcc---------ccccceEEE--ecCCcchhHHHHHHHHcC---eeEecCCHH-HHHHHHHH
Confidence 34443 335677888888772 112455554 355666667777776654 777765421 11122333
Q ss_pred HHHhcCCCEEEEEcCCCCC-ChhhHHHHHHHHHHhC
Q 027065 151 GMLHSRGELLLMLDADGAT-KVTDLEKLESQIHAVG 185 (229)
Q Consensus 151 gl~~a~~d~v~~lD~D~~~-~~~~l~~l~~~~~~~~ 185 (229)
+++.-.++.|+=+-+|+.+ +|+.+..++...-+.+
T Consensus 86 a~~a~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~g 121 (241)
T COG1861 86 AIKAYSADVVVRVTGDNPFLDPELVDAAVDRHLEKG 121 (241)
T ss_pred HHHhcCCCeEEEeeCCCCCCCHHHHHHHHHHHHhcC
Confidence 5555578899999999986 8999998888775543
No 245
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=34.34 E-value=1.3e+02 Score=19.57 Aligned_cols=62 Identities=16% Similarity=0.137 Sum_probs=37.9
Q ss_pred CCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHhcCCCEEEEEcCCCC
Q 027065 101 SFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGA 168 (229)
Q Consensus 101 ~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n~gl~~a~~d~v~~lD~D~~ 168 (229)
..++++|.|.- |++.+..+++.++...+...+... .+....+...+....-+.++++|.|..
T Consensus 33 ~~~v~~v~Vs~---d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~i~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 33 KDDVEFVFVSL---DEDEEEWKKFLKKNNFPWYNVPFD---DDNNSELLKKYGINGIPTLVLLDPDGK 94 (95)
T ss_dssp TTTEEEEEEE----SSSHHHHHHHHHTCTTSSEEEETT---THHHHHHHHHTT-TSSSEEEEEETTSB
T ss_pred CCCEEEEEEEe---CCCHHHHHHHHHhcCCCceEEeeC---cchHHHHHHHCCCCcCCEEEEECCCCC
Confidence 46899999966 455666677777763223443322 233445555555556799999998864
No 246
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=34.03 E-value=1.9e+02 Score=24.95 Aligned_cols=51 Identities=18% Similarity=0.129 Sum_probs=39.6
Q ss_pred EEEEEcC-CCCCHHHHHHHHHHhcCCCEEEEEcCCCC-CChhhHHHHHHHHHH
Q 027065 133 VRIILLG-RNHGKGEAIRKGMLHSRGELLLMLDADGA-TKVTDLEKLESQIHA 183 (229)
Q Consensus 133 i~vi~~~-~~~gk~~a~n~gl~~a~~d~v~~lD~D~~-~~~~~l~~l~~~~~~ 183 (229)
+.++... ...|...++..|++.+..+.++++=+|.. ++++.+..+++.+..
T Consensus 220 v~~I~D~~~~~GPlagI~aaL~~~~~~~~lVl~cDmP~l~~~~l~~L~~~~~~ 272 (346)
T PRK14500 220 LPTLPDRGESVGPISGILTALQSYPGVNWLVVACDLAYLNSETVEKLLAHYRQ 272 (346)
T ss_pred CeEEeCCCCCCChHHHHHHHHHhCCCCCEEEEECCcCCCCHHHHHHHHHhhhc
Confidence 4454433 35799999999999887666788999998 588999999997753
No 247
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=34.00 E-value=2.4e+02 Score=22.42 Aligned_cols=10 Identities=30% Similarity=0.637 Sum_probs=5.7
Q ss_pred CCCEEEEEcC
Q 027065 156 RGELLLMLDA 165 (229)
Q Consensus 156 ~~d~v~~lD~ 165 (229)
.|+|+++.|+
T Consensus 172 aG~Y~vVeDs 181 (237)
T COG3510 172 AGDYLVVEDS 181 (237)
T ss_pred cCceEEEecc
Confidence 4566666555
No 248
>PRK10674 deoxyribodipyrimidine photolyase; Provisional
Probab=33.87 E-value=3.5e+02 Score=24.28 Aligned_cols=85 Identities=7% Similarity=-0.019 Sum_probs=45.2
Q ss_pred ChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHhc-CCC
Q 027065 80 RLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS-RGE 158 (229)
Q Consensus 80 ~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n~gl~~a-~~d 158 (229)
.+.++|+++-+++... ..+++|....+.....+++.++.+++. --.|+.+.+-..-...+...++.. .+-
T Consensus 54 Fl~esL~~L~~~L~~~-------g~~L~v~~g~~~g~~~~vl~~l~~~~~--i~~v~~~~~~~~~~~~rd~~v~~~l~~i 124 (472)
T PRK10674 54 FINAQLNALQIALAEK-------GIPLLFHEVDDFAASVEWLKQFCQQHQ--VTHLFYNYQYEVNERQRDAAVERALRNV 124 (472)
T ss_pred HHHHHHHHHHHHHHHc-------CCceEEEecCCcCCHHHHHHHHHHHcC--CCEEEEecccCHHHHHHHHHHHHHcCCC
Confidence 4667777777776653 457777765545567778888887776 233444332222233344444332 332
Q ss_pred EEEEEcCCCCCChhh
Q 027065 159 LLLMLDADGATKVTD 173 (229)
Q Consensus 159 ~v~~lD~D~~~~~~~ 173 (229)
.+.-++++..++|+.
T Consensus 125 ~~~~~~~~~l~~~~~ 139 (472)
T PRK10674 125 VCQGFDDSVLLPPGS 139 (472)
T ss_pred EEEEecCceEeCccc
Confidence 222245555554443
No 249
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=33.77 E-value=3e+02 Score=24.31 Aligned_cols=101 Identities=17% Similarity=0.207 Sum_probs=56.2
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCC--------CcEEEEEcC---
Q 027065 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTV--------DNVRIILLG--- 139 (229)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~--------~~i~vi~~~--- 139 (229)
++|.-+....|+-.|+++.+ ..--||+++-.-..+...+.++ +.+.. ..+.+....
T Consensus 28 llpv~g~~plId~~L~~l~~----------~Gi~~i~iv~~~~~~~i~~~l~---~~~~~~~~~~~~~~~~~i~~~~q~~ 94 (436)
T PLN02241 28 AVPIGGNYRLIDIPMSNCIN----------SGINKIYVLTQFNSASLNRHLS---RAYNFGNGGNFGDGFVEVLAATQTP 94 (436)
T ss_pred ceEeCCcceEehHHHHHHHh----------CCCCEEEEEeccCHHHHHHHHh---ccCCCCCCcccCCCCEEEcCCcccC
Confidence 56665554566777777766 2235777776543333333333 22210 113333221
Q ss_pred ----CCCCHHHHHHHHHHhcC------CCEEEEEcCCCCCChhhHHHHHHHHHHhC
Q 027065 140 ----RNHGKGEAIRKGMLHSR------GELLLMLDADGATKVTDLEKLESQIHAVG 185 (229)
Q Consensus 140 ----~~~gk~~a~n~gl~~a~------~d~v~~lD~D~~~~~~~l~~l~~~~~~~~ 185 (229)
...|.+.|+..++.... .+.++++.+|..... .+.++++...+..
T Consensus 95 ~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~-dl~~ll~~h~~~~ 149 (436)
T PLN02241 95 GEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRM-DYMDFVQKHRESG 149 (436)
T ss_pred CCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEcc-CHHHHHHHHHHcC
Confidence 13677788876654432 477899999997654 5777776655433
No 250
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=33.38 E-value=1.9e+02 Score=21.10 Aligned_cols=85 Identities=12% Similarity=0.187 Sum_probs=43.4
Q ss_pred CCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcC-CCcEEEEEcCCCCCHHHHHHHHHHhc
Q 027065 77 EEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYT-VDNVRIILLGRNHGKGEAIRKGMLHS 155 (229)
Q Consensus 77 e~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~-~~~i~vi~~~~~~gk~~a~n~gl~~a 155 (229)
....+...|+...+.+.. .+...-.||++.||..+...+..+.+..... ...+..+......+ ...+..-.+..
T Consensus 78 g~T~l~~al~~a~~~l~~----~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~i~i~~i~~g~~~~-~~~l~~ia~~~ 152 (171)
T cd01461 78 GGTNMNDALEAALELLNS----SPGSVPQIILLTDGEVTNESQILKNVREALSGRIRLFTFGIGSDVN-TYLLERLAREG 152 (171)
T ss_pred CCcCHHHHHHHHHHhhcc----CCCCccEEEEEeCCCCCCHHHHHHHHHHhcCCCceEEEEEeCCccC-HHHHHHHHHcC
Confidence 334566666666655432 2344678999999987666655555544322 11233333322122 23333333444
Q ss_pred CCCEEEEEcCC
Q 027065 156 RGELLLMLDAD 166 (229)
Q Consensus 156 ~~d~v~~lD~D 166 (229)
.|.|+.+.|.+
T Consensus 153 gG~~~~~~~~~ 163 (171)
T cd01461 153 RGIARRIYETD 163 (171)
T ss_pred CCeEEEecChH
Confidence 55666555544
No 251
>PF05073 Baculo_p24: Baculovirus P24 capsid protein; InterPro: IPR007765 The Culex nigripalpus NPV (Culex nigripalpus nucleopolyhedrovirus) protein p24 is associated with nucleocapsids of budded and polyhedra-derived virions [, ].; GO: 0019028 viral capsid
Probab=33.33 E-value=42 Score=25.81 Aligned_cols=18 Identities=33% Similarity=0.425 Sum_probs=14.4
Q ss_pred hcCCCceEEEEEECCCCc
Q 027065 98 KDKSFTYEVLIIDDGSSD 115 (229)
Q Consensus 98 ~~~~~~~eiivvdd~s~d 115 (229)
+++..++||+||+|+..|
T Consensus 2 ~Y~~~~iEV~II~N~~~d 19 (182)
T PF05073_consen 2 DYNSDPIEVFIIENDEGD 19 (182)
T ss_pred CCCCCceEEEEEeCCCCC
Confidence 356679999999998754
No 252
>KOG2859 consensus DNA repair protein, member of the recA/RAD51 family [Replication, recombination and repair]
Probab=33.03 E-value=2.1e+02 Score=23.30 Aligned_cols=50 Identities=20% Similarity=0.086 Sum_probs=39.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHhc--------CCCEEEEEcCCCCCChhhHHHHHHHH
Q 027065 132 NVRIILLGRNHGKGEAIRKGMLHS--------RGELLLMLDADGATKVTDLEKLESQI 181 (229)
Q Consensus 132 ~i~vi~~~~~~gk~~a~n~gl~~a--------~~d~v~~lD~D~~~~~~~l~~l~~~~ 181 (229)
++-=++.+++.||..-+..+...+ .+--|+|+|-|..++.-.|.+++++-
T Consensus 39 ~~vEi~Gp~~sgKt~vL~ql~a~CilPk~~GGl~~~VLfidld~~fd~lrL~~~l~hr 96 (293)
T KOG2859|consen 39 TLVEISGPGNSGKTLVLQQLVAHCILPKKFGGLQWSVLFIDLDHKFDRLRLAKSLRHR 96 (293)
T ss_pred cEEEEeCCCCccHHHHHHHHHHHeecccccCCceeEEEEEeccccccHHHHHHHHHHH
Confidence 455567788999998888877765 13678999999999999888888764
No 253
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=32.15 E-value=1.8e+02 Score=20.63 Aligned_cols=72 Identities=15% Similarity=0.054 Sum_probs=42.2
Q ss_pred CCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHhc--CC-CEEEEEcCCCCCChh
Q 027065 100 KSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS--RG-ELLLMLDADGATKVT 172 (229)
Q Consensus 100 ~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n~gl~~a--~~-d~v~~lD~D~~~~~~ 172 (229)
...++|++-..||.+....+.......... ....-.-.+...|-..+...+++.+ ++ ++++++.+|..+.++
T Consensus 24 ~~~~~~~~~Avd~~~~~~~~~~~~~~~~~~-~~~~~~l~~gEiGC~lSH~~~w~~~~~~~~~~alIlEDDv~~~~~ 98 (128)
T cd06532 24 LGLDFEFFDAVDGKDLSEEELAALYDALFL-PRYGRPLTPGEIGCFLSHYKLWQKIVESNLEYALILEDDAILDPD 98 (128)
T ss_pred cCCCeEEEeccccccCCHHHHHHHhHHHhh-hhcCCCCChhhHHHHHHHHHHHHHHHHcCCCeEEEEccCcEECCC
Confidence 355899998889888776554433211000 0000001122455555555566554 34 999999999999888
No 254
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=31.88 E-value=1.2e+02 Score=25.83 Aligned_cols=50 Identities=18% Similarity=0.181 Sum_probs=25.3
Q ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHh--cCCCEEEEEcCCCCCChhhHHHH
Q 027065 128 YTVDNVRIILLGRNHGKGEAIRKGMLH--SRGELLLMLDADGATKVTDLEKL 177 (229)
Q Consensus 128 ~~~~~i~vi~~~~~~gk~~a~n~gl~~--a~~d~v~~lD~D~~~~~~~l~~l 177 (229)
+|..++.-+..++..||..-.-..+.. ..+.+++|+|+...++|.+++.+
T Consensus 50 ~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~ld~~~a~~l 101 (322)
T PF00154_consen 50 LPRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAEHALDPEYAESL 101 (322)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS---HHHHHHT
T ss_pred cccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecCcccchhhHHHhc
Confidence 343445445555566665332233332 24677778887777777766655
No 255
>PF15224 SCRG1: Scrapie-responsive protein 1
Probab=31.62 E-value=36 Score=21.63 Aligned_cols=13 Identities=38% Similarity=0.539 Sum_probs=10.5
Q ss_pred CceEEEEEeecCC
Q 027065 65 EKYISLIIPAFNE 77 (229)
Q Consensus 65 ~p~vsviip~~ne 77 (229)
-|++|.|||+-|+
T Consensus 66 GPkiSFVIPCN~~ 78 (78)
T PF15224_consen 66 GPKISFVIPCNNH 78 (78)
T ss_pred CCceeEEEeCCCC
Confidence 4789999999664
No 256
>COG2121 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.24 E-value=1.9e+02 Score=23.08 Aligned_cols=57 Identities=21% Similarity=0.342 Sum_probs=40.1
Q ss_pred EEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHhcC-C-CEEEEEcCC
Q 027065 105 EVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSR-G-ELLLMLDAD 166 (229)
Q Consensus 105 eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n~gl~~a~-~-d~v~~lD~D 166 (229)
+++++..-|-|+ |++....+++ .+..++.+.|.|...|+..++...+ | ++++..|.-
T Consensus 69 ~~~amvS~s~DG--EliA~~l~kf---G~~~IRGSs~Kgg~~Alr~l~k~Lk~G~~i~itpDgP 127 (214)
T COG2121 69 KIYAMVSPSRDG--ELIARLLEKF---GLRVIRGSSNKGGISALRALLKALKQGKSIAITPDGP 127 (214)
T ss_pred cEEEEEcCCcCH--HHHHHHHHHc---CceEEeccCCcchHHHHHHHHHHHhCCCcEEEcCCCC
Confidence 477777777775 3444455554 4899999999999999999998764 4 555555543
No 257
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=30.72 E-value=81 Score=29.98 Aligned_cols=38 Identities=18% Similarity=0.109 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHH
Q 027065 81 LPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDF 124 (229)
Q Consensus 81 l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~ 124 (229)
...++-|+++. ++|..++-++|.|||...-|.+.+.|.
T Consensus 18 ~~nTvLS~lA~------dYP~~kls~YvSDDg~s~ltf~al~Ea 55 (720)
T PF03552_consen 18 TANTVLSILAY------DYPVEKLSCYVSDDGGSMLTFYALMEA 55 (720)
T ss_pred eHHHHHHHHhh------cCCccceeEEEecCCchHHHHHHHHHH
Confidence 45777888873 467789999999999999988777654
No 258
>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis. One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.
Probab=30.72 E-value=83 Score=25.16 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=29.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCEEEEEcCCCCC-ChhhHHHHHHHHH
Q 027065 132 NVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGAT-KVTDLEKLESQIH 182 (229)
Q Consensus 132 ~i~vi~~~~~~gk~~a~n~gl~~a~~d~v~~lD~D~~~-~~~~l~~l~~~~~ 182 (229)
.+.++..+ ..|...|++.|+.....+-++++=+|... .+..+..++....
T Consensus 64 g~~vl~d~-~~gLN~Al~~a~~~~~~~~vlvl~aDLPll~~~dl~~~l~~~~ 114 (217)
T PF01983_consen 64 GAEVLPDP-GRGLNAALNAALAAAGDDPVLVLPADLPLLTPEDLDALLAAAG 114 (217)
T ss_dssp SSEEEE----S-HHHHHHHHHH-H--S-EEEE-S--TT--HHHHHHHCT-SS
T ss_pred CCeEecCC-CCCHHHHHHHHHhccCCCceEEeecCCccCCHHHHHHHHhccC
Confidence 67888876 66788888888555566778888899876 8888999888754
No 259
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=29.99 E-value=2.9e+02 Score=22.02 Aligned_cols=61 Identities=11% Similarity=0.073 Sum_probs=36.2
Q ss_pred CceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHhcCCCEEEEEcCCCCC
Q 027065 102 FTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGAT 169 (229)
Q Consensus 102 ~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n~gl~~a~~d~v~~lD~D~~~ 169 (229)
.+++++.+|-.-++...+..+ -| ++..+..+..--.....-..++.-...+.+++|+|...
T Consensus 96 q~~kvl~vdIdi~~~~p~a~e-----~p--~i~f~egss~dpai~eqi~~~~~~y~kIfvilDsdHs~ 156 (237)
T COG3510 96 QPFKVLGVDIDIKPLDPAARE-----VP--DILFIEGSSTDPAIAEQIRRLKNEYPKIFVILDSDHSM 156 (237)
T ss_pred CCceEEEEecccCcCChhhhc-----CC--CeEEEeCCCCCHHHHHHHHHHhcCCCcEEEEecCCchH
Confidence 378999998876664443332 33 78888765321122222223333345899999999764
No 260
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=29.10 E-value=3e+02 Score=22.00 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=18.6
Q ss_pred hcCCCEEEEEcCCCCCChhhHHHHHH
Q 027065 154 HSRGELLLMLDADGATKVTDLEKLES 179 (229)
Q Consensus 154 ~a~~d~v~~lD~D~~~~~~~l~~l~~ 179 (229)
....|-|+++|+|..+..+ +..+.+
T Consensus 87 l~~~drvlylD~D~~v~~~-i~~Lf~ 111 (240)
T cd02537 87 LTEYDKVVFLDADTLVLRN-IDELFD 111 (240)
T ss_pred ccccceEEEEeCCeeEccC-HHHHhC
Confidence 3467999999999998764 445544
No 261
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=28.27 E-value=2.9e+02 Score=21.63 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=26.1
Q ss_pred eEEEEEECCC-CcchH-HHHHHHHHHcCCCcEEEEEcCCCCC
Q 027065 104 YEVLIIDDGS-SDGTK-RVAFDFVRKYTVDNVRIILLGRNHG 143 (229)
Q Consensus 104 ~eiivvdd~s-~d~t~-~~~~~~~~~~~~~~i~vi~~~~~~g 143 (229)
.++|+|||-- |-+|. .+++.+.+.+|..++.+...-.+.+
T Consensus 122 ~~lVLVDDEiSTG~T~lnli~al~~~~p~~~yvvasL~d~~~ 163 (191)
T PF15609_consen 122 RTLVLVDDEISTGNTFLNLIRALHAKYPRKRYVVASLLDWRS 163 (191)
T ss_pred CCEEEEecCccchHHHHHHHHHHHHhCCCceEEEEEEeeCCC
Confidence 4889999874 44555 8888888888844444444433443
No 262
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=28.16 E-value=2.1e+02 Score=19.89 Aligned_cols=25 Identities=16% Similarity=0.256 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027065 8 VEALLVVVVIILFGLISAIIFEAYR 32 (229)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (229)
+...+.+.++++++.-+-+|.+.+.
T Consensus 24 v~~al~~SlLIalaaKC~~~~k~~~ 48 (102)
T PF15176_consen 24 VVTALVTSLLIALAAKCPVWYKYLA 48 (102)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 3344445555555555555544443
No 263
>PF10794 DUF2606: Protein of unknown function (DUF2606); InterPro: IPR019730 This entry represents bacterial proteins with unknown function.
Probab=28.05 E-value=97 Score=22.25 Aligned_cols=54 Identities=15% Similarity=0.309 Sum_probs=34.2
Q ss_pred cCCCceEEEEEE--CCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHhcCCCEEEEEcCCCC
Q 027065 99 DKSFTYEVLIID--DGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGA 168 (229)
Q Consensus 99 ~~~~~~eiivvd--d~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n~gl~~a~~d~v~~lD~D~~ 168 (229)
||-..+||.++- |.++.++.|+-..+.+...+. .++.... .+|+|++++--|..
T Consensus 54 ~pi~~~ev~lmKa~ds~~qPs~eig~~IGKTD~~G--ki~Wk~~--------------~kG~Y~v~l~n~e~ 109 (131)
T PF10794_consen 54 QPIKDFEVTLMKAADSDPQPSKEIGISIGKTDEEG--KIIWKNG--------------RKGKYIVFLPNGET 109 (131)
T ss_pred CcccceEEEEEeccccCCCCchhhceeecccCCCC--cEEEecC--------------CcceEEEEEcCCCc
Confidence 566789999999 888888887765554444321 2222111 35788888766543
No 264
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=27.95 E-value=4.2e+02 Score=23.28 Aligned_cols=99 Identities=18% Similarity=0.302 Sum_probs=54.7
Q ss_pred CceEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcC--CCC
Q 027065 65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG--RNH 142 (229)
Q Consensus 65 ~p~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~--~~~ 142 (229)
.+.+++-|..+|++. |+.+++.+.+.. -+.-.-++|++.|.++..+... ++++ .+++.+- +-+
T Consensus 31 ~~~~slavAGRn~~K-----L~~vL~~~~~k~--~~~ls~~~i~i~D~~n~~Sl~e---mak~-----~~vivN~vGPyR 95 (423)
T KOG2733|consen 31 FEGLSLAVAGRNEKK-----LQEVLEKVGEKT--GTDLSSSVILIADSANEASLDE---MAKQ-----ARVIVNCVGPYR 95 (423)
T ss_pred ccCceEEEecCCHHH-----HHHHHHHHhhcc--CCCcccceEEEecCCCHHHHHH---HHhh-----hEEEEeccccce
Confidence 345888999999863 444444444321 1223567788888777665432 2222 3444432 111
Q ss_pred CHHHHHHHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHH
Q 027065 143 GKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHA 183 (229)
Q Consensus 143 gk~~a~n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~ 183 (229)
=.+.+.-.|.-.....+| |..-.|.|++.|-...++
T Consensus 96 ~hGE~VVkacienG~~~v-----DISGEP~f~E~mq~kYhd 131 (423)
T KOG2733|consen 96 FHGEPVVKACIENGTHHV-----DISGEPQFMERMQLKYHD 131 (423)
T ss_pred ecCcHHHHHHHHcCCcee-----ccCCCHHHHHHHHHHHHH
Confidence 123333333333334443 666779999999887754
No 265
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=27.44 E-value=2.4e+02 Score=23.39 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=25.4
Q ss_pred CCceEEEEEECCCCcc-hHHHHHHHHHHcCCCcEEEEEcC
Q 027065 101 SFTYEVLIIDDGSSDG-TKRVAFDFVRKYTVDNVRIILLG 139 (229)
Q Consensus 101 ~~~~eiivvdd~s~d~-t~~~~~~~~~~~~~~~i~vi~~~ 139 (229)
..++|+++.||+++.. ..+.++++..+. ++..+..+
T Consensus 37 G~~v~l~~~D~~~~p~~a~~~~~~l~~~~---~V~aviG~ 73 (334)
T cd06327 37 GRPIELVVADHQNKADVAAAKAREWIDRD---GVDMIVGG 73 (334)
T ss_pred CeEEEEEEecCCCCchHHHHHHHHHHhhc---CceEEECC
Confidence 4479999999998765 557777776553 46666654
No 266
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=27.38 E-value=2.7e+02 Score=22.81 Aligned_cols=80 Identities=13% Similarity=0.109 Sum_probs=39.5
Q ss_pred eecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHH
Q 027065 73 PAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGM 152 (229)
Q Consensus 73 p~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n~gl 152 (229)
-+|.....+.+.|....+ ...+++|+|++.....+-.+.++++.+..- .++++... +.-..+
T Consensus 112 LT~~~S~~v~~~l~~a~~---------~~~~~~V~v~es~P~~eG~~~a~~L~~~gi--~v~~i~d~-------~~~~~m 173 (282)
T PF01008_consen 112 LTHGYSSTVERFLLSAKK---------KGKKFRVIVLESRPYNEGRLMAKELAEAGI--PVTLIPDS-------AVGYVM 173 (282)
T ss_dssp EEES--SHHHHHHHHHHH---------TTEEEEEEEE--TTTTHHHTHHHHHHHTT---EEEEE-GG-------GHHHHH
T ss_pred EEeCCchHHHHHHHHHHH---------cCCeEEEEEccCCcchhhhhHHHHhhhcce--eEEEEech-------HHHHHH
Confidence 334444445555555333 345799999987766556666666665421 34554432 444555
Q ss_pred HhcCCCEEEEEcCCCCCChh
Q 027065 153 LHSRGELLLMLDADGATKVT 172 (229)
Q Consensus 153 ~~a~~d~v~~lD~D~~~~~~ 172 (229)
+. .-|.| ++-+|..+..+
T Consensus 174 ~~-~vd~V-liGad~v~~nG 191 (282)
T PF01008_consen 174 PR-DVDKV-LIGADAVLANG 191 (282)
T ss_dssp HC-TESEE-EEE-SEEETTS
T ss_pred HH-hCCee-EEeeeEEecCC
Confidence 55 23433 44555554444
No 267
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=26.53 E-value=58 Score=26.38 Aligned_cols=28 Identities=29% Similarity=0.330 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHh-cCCCEEEEEcCCCCCC
Q 027065 143 GKGEAIRKGMLH-SRGELLLMLDADGATK 170 (229)
Q Consensus 143 gk~~a~n~gl~~-a~~d~v~~lD~D~~~~ 170 (229)
.|..++..+|.. -+.+||+++|+|..+.
T Consensus 62 ~K~~~lr~~m~~~P~~~wv~~lD~Dali~ 90 (239)
T PF05637_consen 62 AKIPALRAAMKKYPEAEWVWWLDSDALIM 90 (239)
T ss_dssp THHHHHHHHHHH-TT-SEEEEE-TTEEE-
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCeEEE
Confidence 377788888876 5689999999999863
No 268
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=26.13 E-value=2e+02 Score=18.95 Aligned_cols=34 Identities=3% Similarity=0.076 Sum_probs=22.9
Q ss_pred ceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcC
Q 027065 103 TYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG 139 (229)
Q Consensus 103 ~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~ 139 (229)
...++++-...++.+...+..+++.+. +.++..+
T Consensus 27 kaklViiA~D~~~~~~~~i~~~c~~~~---Vp~~~~~ 60 (82)
T PRK13602 27 SVKEVVVAEDADPRLTEKVEALANEKG---VPVSKVD 60 (82)
T ss_pred CeeEEEEECCCCHHHHHHHHHHHHHcC---CCEEEEC
Confidence 456666666666679888888888775 4444443
No 269
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=26.12 E-value=2.1e+02 Score=20.39 Aligned_cols=67 Identities=19% Similarity=0.259 Sum_probs=40.9
Q ss_pred ceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcC--CCCCHHHHHHHHHHhcCCCEEEEEcCCCCCChhhHHHHHHH
Q 027065 103 TYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG--RNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQ 180 (229)
Q Consensus 103 ~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~--~~~gk~~a~n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~ 180 (229)
.--|++..|.++.++...+..+++.+. +-++..+ ...|+..+.+. ...+.+.|.... ++++.+...
T Consensus 44 a~LVviA~Dv~P~~~~~~l~~lc~~~~---vpyv~V~sk~~LG~a~g~~~------~~vv~i~~~~~~---~~~~~l~~~ 111 (116)
T COG1358 44 AKLVVIAEDVSPEELVKHLPALCEEKN---VPYVYVGSKKELGKAVGKEV------RKVVAIVDKGFA---KKLEDLVEK 111 (116)
T ss_pred CcEEEEecCCCHHHHHHHHHHHHHhcC---CCEEEeCCHHHHHHHhCCCc------ceeEEEeehhhh---hHHHHHHHH
Confidence 456777788777888888888888765 4444443 23444333332 556777766554 556655554
Q ss_pred H
Q 027065 181 I 181 (229)
Q Consensus 181 ~ 181 (229)
.
T Consensus 112 ~ 112 (116)
T COG1358 112 V 112 (116)
T ss_pred h
Confidence 3
No 270
>PRK06620 hypothetical protein; Validated
Probab=26.10 E-value=3.3e+02 Score=21.46 Aligned_cols=78 Identities=9% Similarity=-0.035 Sum_probs=40.1
Q ss_pred cchHHHHHHHHHHcC-CC--cEEEEEcCCCCCHHHHHHHHHHhc----------------CCCEEEEEcCCCCCChhhHH
Q 027065 115 DGTKRVAFDFVRKYT-VD--NVRIILLGRNHGKGEAIRKGMLHS----------------RGELLLMLDADGATKVTDLE 175 (229)
Q Consensus 115 d~t~~~~~~~~~~~~-~~--~i~vi~~~~~~gk~~a~n~gl~~a----------------~~d~v~~lD~D~~~~~~~l~ 175 (229)
......++++.+.++ .+ +.-++..+...||.+-++.-.+.. ..+ ++++|+=..+....+-
T Consensus 25 ~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~~~~~~~~~~~~d-~lliDdi~~~~~~~lf 103 (214)
T PRK06620 25 DQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIFFNEEILEKYN-AFIIEDIENWQEPALL 103 (214)
T ss_pred HHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcchhhhchhHHhcCC-EEEEeccccchHHHHH
Confidence 334555555543221 01 234566666666665555321111 122 5566665556666777
Q ss_pred HHHHHHHHhCCcceeecc
Q 027065 176 KLESQIHAVGRKEYNHGD 193 (229)
Q Consensus 176 ~l~~~~~~~~~~~~~~~~ 193 (229)
.+.+.+.+.....+..++
T Consensus 104 ~l~N~~~e~g~~ilits~ 121 (214)
T PRK06620 104 HIFNIINEKQKYLLLTSS 121 (214)
T ss_pred HHHHHHHhcCCEEEEEcC
Confidence 888888776654443333
No 271
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=25.10 E-value=2.6e+02 Score=23.84 Aligned_cols=101 Identities=12% Similarity=0.051 Sum_probs=51.9
Q ss_pred EEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCc-chHHHHHHHHHHcCCC-----cEEEEEcCC-CC-
Q 027065 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSD-GTKRVAFDFVRKYTVD-----NVRIILLGR-NH- 142 (229)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d-~t~~~~~~~~~~~~~~-----~i~vi~~~~-~~- 142 (229)
++|.-|..+-|+..|+.+.+ ..--||+|+-..-.+ ...+.+.+- ..+... ...++..++ ..
T Consensus 27 LlpV~gk~PlIe~~l~~L~~----------~Gi~~I~iv~~~~~~~~I~~~l~~~-~~~~~~~~~~~~~~~~~~e~~~l~ 95 (369)
T TIGR02092 27 SLPFGGRYRLIDFPLSNMVN----------AGIRNVFIFFKNKERQSLFDHLGSG-REWDLHRKRDGLFVFPYNDRDDLS 95 (369)
T ss_pred ccccCCeeeEEEEEhhhhhc----------cCCCEEEEEeCCCcHHHHHHHHhCC-CCCCcccccCcEEEEeccCCCCcc
Confidence 55666653556666666666 123477777664332 333333210 111100 011222222 22
Q ss_pred -CHHHHHHHHHHhc---CCCEEEEEcCCCCCChhhHHHHHHHHHH
Q 027065 143 -GKGEAIRKGMLHS---RGELLLMLDADGATKVTDLEKLESQIHA 183 (229)
Q Consensus 143 -gk~~a~n~gl~~a---~~d~v~~lD~D~~~~~~~l~~l~~~~~~ 183 (229)
|.+.++..+.+.. ..+.++++.+|...+ -.+.++++...+
T Consensus 96 tg~~~a~~~a~~~l~~~~~~~~lvlnGD~l~~-~dl~~ll~~h~~ 139 (369)
T TIGR02092 96 EGGKRYFSQNLEFLKRSTSEYTVVLNSHMVCN-IDLKAVLKYHEE 139 (369)
T ss_pred cChHHHHHHHHHHHHhCCCCEEEEECCCEEEe-cCHHHHHHHHHH
Confidence 4455666666654 247899999998655 446677765543
No 272
>KOG1971 consensus Lysyl hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=25.02 E-value=1.7e+02 Score=25.82 Aligned_cols=66 Identities=18% Similarity=0.075 Sum_probs=48.9
Q ss_pred CcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHhcCCCEEEEEcCCCCC-ChhhHHHHHHHHHHh
Q 027065 114 SDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGAT-KVTDLEKLESQIHAV 184 (229)
Q Consensus 114 ~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n~gl~~a~~d~v~~lD~D~~~-~~~~l~~l~~~~~~~ 184 (229)
.+.+.+.+++...++. ..+++......+...|++.+++.++ + ++.|+|..+ .|+.+..+.....+.
T Consensus 137 ~~~~~~~~~~~~~e~~--p~~~v~~~~~~~~~ea~~~evE~~r--~-~~~dad~~i~~P~~~~~li~~~k~~ 203 (415)
T KOG1971|consen 137 SANIKEFFRRHGSEYS--PGKFVFPMFQPDFSEARLMEVEHFR--K-FSVDADFVITRPNTLRNLIVLNKEF 203 (415)
T ss_pred hhccHHHHHHhccccC--CeeEEeeccCccHHHHHHHHHHHhh--h-cccccceeccCChhHHHHHHHhhhc
Confidence 4567777777777765 3455555567889999999999998 3 889999887 677777776655554
No 273
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=24.72 E-value=3.6e+02 Score=21.44 Aligned_cols=78 Identities=10% Similarity=0.149 Sum_probs=40.8
Q ss_pred EEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHH--HHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHH
Q 027065 105 EVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR--KGMLHSRGELLLMLDADGATKVTDLEKLESQIH 182 (229)
Q Consensus 105 eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n--~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~ 182 (229)
+||+.+| -.+...++...++.++++++..+ +.|.-..+. .-+..+.+.--++++.-+.++...-..+++.++
T Consensus 6 ~Iiit~d-----~e~~~~~l~~~~~~~~~~~f~~~-~i~Vd~iReii~~~~~~~~~~k~iI~~a~~l~~~A~NaLLK~LE 79 (206)
T PRK08485 6 KIIITSD-----FEESKEELINEFGKKNLRFFIKE-EFKIEDAKEVIAEAYIAESEEKIIVIAAPSYGIEAQNALLKILE 79 (206)
T ss_pred eEEEeCC-----HHHHHHHHHHhcCCCceEEECCC-CCCHHHHHHHHHHHhhCCCCcEEEEEchHhhCHHHHHHHHHHhc
Confidence 5566554 33444555566665566666543 555433322 111222211112334445777888888888888
Q ss_pred HhCCcc
Q 027065 183 AVGRKE 188 (229)
Q Consensus 183 ~~~~~~ 188 (229)
+.|+..
T Consensus 80 EPp~~~ 85 (206)
T PRK08485 80 EPPKNI 85 (206)
T ss_pred CCCCCe
Confidence 766544
No 274
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=24.62 E-value=3e+02 Score=20.42 Aligned_cols=72 Identities=8% Similarity=0.117 Sum_probs=40.7
Q ss_pred ceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHhcCCCEEEEEcCCCCCChhhHHHHHHH
Q 027065 103 TYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQ 180 (229)
Q Consensus 103 ~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~ 180 (229)
+++||.|+. |.+.+.++++.++.+ +.....+-.......+...+....-+..+++|.|..+-.......+..
T Consensus 65 ~~~vV~Vs~---D~~~~~~~~f~~~~~---~~~~~~p~~~~~~~~l~~~y~v~~iPt~vlId~~G~Vv~~~~~~~i~~ 136 (146)
T cd03008 65 QLALVYVSM---DQSEQQQESFLKDMP---KKWLFLPFEDEFRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILR 136 (146)
T ss_pred CEEEEEEEC---CCCHHHHHHHHHHCC---CCceeecccchHHHHHHHHcCCCCCCEEEEECCCCcEEeeChHHHHHH
Confidence 599999974 444555677777765 222111111112223333344445699999999988766555554443
No 275
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=24.52 E-value=2.5e+02 Score=23.63 Aligned_cols=72 Identities=10% Similarity=0.041 Sum_probs=43.1
Q ss_pred cchHHHHHHHHHHc--CCCcEEEEEcCCCCCHHHHHHHHHHhcC-CCEEE------------------EE-cCCCCCChh
Q 027065 115 DGTKRVAFDFVRKY--TVDNVRIILLGRNHGKGEAIRKGMLHSR-GELLL------------------ML-DADGATKVT 172 (229)
Q Consensus 115 d~t~~~~~~~~~~~--~~~~i~vi~~~~~~gk~~a~n~gl~~a~-~d~v~------------------~l-D~D~~~~~~ 172 (229)
++|.++++.+.+.. ....-.++..+...||...+..++..|. .+||+ -- ..+.+..|.
T Consensus 5 ~~t~el~~~l~~~~~~~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~~wiVl~vp~a~~~~~~~~~~~~~~~~~~~~~qP~ 84 (309)
T PF10236_consen 5 KPTLELINKLKEADKSSKNNRYVLTGERGSGKSVLLAQAVHYARENGWIVLYVPSAQDWVNGTTDYAPSPYNPGLYDQPM 84 (309)
T ss_pred hHHHHHHHHHHHhcccCCceEEEEECCCCCCHHHHHHHHHHHHHhCCEEEEEcCCHHHHhhCCeeEeeCCCCCCeeecHH
Confidence 34555555554431 1123445566677889988888887762 12222 22 345556788
Q ss_pred hHHHHHHHHHHhCC
Q 027065 173 DLEKLESQIHAVGR 186 (229)
Q Consensus 173 ~l~~l~~~~~~~~~ 186 (229)
.-.++++.|.+.++
T Consensus 85 ~a~~~L~~~~~~N~ 98 (309)
T PF10236_consen 85 YAAKWLKKFLKANE 98 (309)
T ss_pred HHHHHHHHHHHHhH
Confidence 88888888876553
No 276
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=23.98 E-value=3.4e+02 Score=20.84 Aligned_cols=102 Identities=9% Similarity=0.104 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchH-HHHHHHHHHcCCCcEEEEEcCCCCCH--HHHHHHHHHhcCCCE
Q 027065 83 GALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTK-RVAFDFVRKYTVDNVRIILLGRNHGK--GEAIRKGMLHSRGEL 159 (229)
Q Consensus 83 ~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~-~~~~~~~~~~~~~~i~vi~~~~~~gk--~~a~n~gl~~a~~d~ 159 (229)
+.+..+++..... ...|.++ |+++++. +..+.+.++|| ++.+.....-... ..++-..++.+..|+
T Consensus 35 dl~~~l~~~~~~~-------~~~vfll--G~~~~v~~~~~~~l~~~yP--~l~i~g~~g~f~~~~~~~i~~~I~~s~~di 103 (177)
T TIGR00696 35 DLMEELCQRAGKE-------KLPIFLY--GGKPDVLQQLKVKLIKEYP--KLKIVGAFGPLEPEERKAALAKIARSGAGI 103 (177)
T ss_pred HHHHHHHHHHHHc-------CCeEEEE--CCCHHHHHHHHHHHHHHCC--CCEEEEECCCCChHHHHHHHHHHHHcCCCE
Confidence 4556666654431 4688888 7777766 44556777888 6776654222222 133445556666675
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHHhCCcceeeccceeec
Q 027065 160 LLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVD 198 (229)
Q Consensus 160 v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 198 (229)
+++ --...-..-|+.+....+. .....+.|...+.-
T Consensus 104 l~V-glG~PkQE~~~~~~~~~~~--~~v~~gvGg~fd~~ 139 (177)
T TIGR00696 104 VFV-GLGCPKQEIWMRNHRHLKP--DAVMIGVGGSFDVF 139 (177)
T ss_pred EEE-EcCCcHhHHHHHHhHHhCC--CcEEEEeceeeeec
Confidence 554 3344444555554323221 23344455444433
No 277
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=23.90 E-value=5.7e+02 Score=23.45 Aligned_cols=93 Identities=16% Similarity=0.154 Sum_probs=54.5
Q ss_pred ChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCC---CcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHhcC
Q 027065 80 RLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGS---SDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSR 156 (229)
Q Consensus 80 ~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s---~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n~gl~~a~ 156 (229)
.+.+.|+..+..+ ..++++++.-|.+ ..++.+.++++....+ .+++...+....+..+-..+++ +
T Consensus 352 ~~~~~l~~~~~~l--------~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~--~i~~~~~~~~~~~~~~~~~~v~--~ 419 (555)
T TIGR03143 352 SLRQQLVGIFGRL--------ENPVTLLLFLDGSNEKSAELQSFLGEFASLSE--KLNSEAVNRGEEPESETLPKIT--K 419 (555)
T ss_pred HHHHHHHHHHHhc--------CCCEEEEEEECCCchhhHHHHHHHHHHHhcCC--cEEEEEeccccchhhHhhcCCC--c
Confidence 3455566666633 3378887665543 2446677777776555 6777554322223333333333 5
Q ss_pred CCEEEEEcCCC---------CCChhhHHHHHHHHHHh
Q 027065 157 GELLLMLDADG---------ATKVTDLEKLESQIHAV 184 (229)
Q Consensus 157 ~d~v~~lD~D~---------~~~~~~l~~l~~~~~~~ 184 (229)
.+.+.++|.+. .+..+-+..++..+-..
T Consensus 420 ~P~~~i~~~~~~~~~i~f~g~P~G~Ef~s~i~~i~~~ 456 (555)
T TIGR03143 420 LPTVALLDDDGNYTGLKFHGVPSGHELNSFILALYNA 456 (555)
T ss_pred CCEEEEEeCCCcccceEEEecCccHhHHHHHHHHHHh
Confidence 57888887553 35667788888777553
No 278
>KOG3765 consensus Predicted glycosyltransferase [Carbohydrate transport and metabolism]
Probab=23.82 E-value=1.2e+02 Score=26.62 Aligned_cols=40 Identities=13% Similarity=0.032 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhcCCCEEEEEcCCCCCChhhHHHHHHHHHH
Q 027065 144 KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHA 183 (229)
Q Consensus 144 k~~a~n~gl~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~ 183 (229)
....+|.|.+-|++++++..|.|..++.+..+.+...+..
T Consensus 179 ~Nl~RNvAr~ga~t~~~l~sD~dm~~S~gl~~~~~~~~~q 218 (386)
T KOG3765|consen 179 FNLMRNVARKGANTDYMLMSDIDMVPSYGLADMLKKILNQ 218 (386)
T ss_pred hHHHHHHHHhhcCCCcEEEEeeeeeeccchHHHHHHHHHH
Confidence 5577899999999999999999999988877776665554
No 279
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=23.78 E-value=2.7e+02 Score=23.48 Aligned_cols=50 Identities=16% Similarity=0.240 Sum_probs=30.8
Q ss_pred ceEEEEEECCCCcc-hHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHhc
Q 027065 103 TYEVLIIDDGSSDG-TKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS 155 (229)
Q Consensus 103 ~~eiivvdd~s~d~-t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n~gl~~a 155 (229)
++|+++.||+++.. +.+.++++..+. ++.++......+-..+....++..
T Consensus 42 ~i~lv~~D~~~~p~~a~~~a~~li~~d---~v~~iiG~~~s~~~~a~~~~~~~~ 92 (357)
T cd06337 42 EVEIIVRDSQSNPNRAGLVAQELILTD---KVDLLLAGGTPDTTNPVSDQCEAN 92 (357)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHHhcc---CccEEEecCCcchhhHHHHHHHHh
Confidence 68999999988665 557777777663 366665544444443443333333
No 280
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=23.70 E-value=2.4e+02 Score=19.13 Aligned_cols=10 Identities=10% Similarity=0.328 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 027065 23 ISAIIFEAYR 32 (229)
Q Consensus 23 ~~~~~~~~~~ 32 (229)
+.+.|+..++
T Consensus 47 ~VilwfvCC~ 56 (94)
T PF05393_consen 47 LVILWFVCCK 56 (94)
T ss_pred HHHHHHHHHH
Confidence 3334444444
No 281
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=23.34 E-value=3e+02 Score=23.11 Aligned_cols=77 Identities=6% Similarity=0.174 Sum_probs=53.0
Q ss_pred EEEEEECC--CCcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHhc--CCCEEEEEcCCCCCChhhHHHHHHH
Q 027065 105 EVLIIDDG--SSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS--RGELLLMLDADGATKVTDLEKLESQ 180 (229)
Q Consensus 105 eiivvdd~--s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n~gl~~a--~~d~v~~lD~D~~~~~~~l~~l~~~ 180 (229)
.+.++..- |.|+|.++++.+..++| .+.......-.....++..|++.. .-|+++++-+-..-+.+.|.++...
T Consensus 159 ~l~~~tQTTls~ddt~~Iv~~l~~r~p--~~~~~~~~~ICyAT~nRQ~Avk~la~~~Dl~iVVG~~nSSNs~rL~eiA~~ 236 (294)
T COG0761 159 KLAFVTQTTLSVDDTAEIVAALKERFP--KIEVPPFNDICYATQNRQDAVKELAPEVDLVIVVGSKNSSNSNRLAEIAKR 236 (294)
T ss_pred cEEEEeeeecCHHHHHHHHHHHHHhCc--cccCCcccccchhhhhHHHHHHHHhhcCCEEEEECCCCCccHHHHHHHHHH
Confidence 45555443 56889999999999998 444444333344556677777654 3699999988888888877777666
Q ss_pred HHH
Q 027065 181 IHA 183 (229)
Q Consensus 181 ~~~ 183 (229)
...
T Consensus 237 ~g~ 239 (294)
T COG0761 237 HGK 239 (294)
T ss_pred hCC
Confidence 543
No 282
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=23.21 E-value=3e+02 Score=19.91 Aligned_cols=53 Identities=23% Similarity=0.348 Sum_probs=30.2
Q ss_pred CChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCC-cchHHHHHHHHHHcCCCcEEEEEc
Q 027065 79 HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSS-DGTKRVAFDFVRKYTVDNVRIILL 138 (229)
Q Consensus 79 ~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~-d~t~~~~~~~~~~~~~~~i~vi~~ 138 (229)
..+...|+..+.... .+...-.|+++-||.. +...++++...+... +++++..
T Consensus 78 t~l~~aL~~a~~~~~-----~~~~~~~IilltDG~~~~~~~~i~~~v~~~~~--~~~i~~~ 131 (155)
T PF13768_consen 78 TDLLAALRAALALLQ-----RPGCVRAIILLTDGQPVSGEEEILDLVRRARG--HIRIFTF 131 (155)
T ss_pred ccHHHHHHHHHHhcc-----cCCCccEEEEEEeccCCCCHHHHHHHHHhcCC--CceEEEE
Confidence 455666666665431 2345678888888884 444556555443322 4555554
No 283
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=22.97 E-value=3.3e+02 Score=20.32 Aligned_cols=34 Identities=21% Similarity=0.163 Sum_probs=25.1
Q ss_pred CChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHH
Q 027065 79 HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDF 124 (229)
Q Consensus 79 ~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~ 124 (229)
+.+.+.|+.+.+ .+|+.|+-.++.+-+.++++.+
T Consensus 61 Pgv~efL~~l~~------------~yel~I~T~~~~~yA~~vl~~l 94 (156)
T TIGR02250 61 PFLHEFLKEASK------------LYEMHVYTMGTRAYAQAIAKLI 94 (156)
T ss_pred CCHHHHHHHHHh------------hcEEEEEeCCcHHHHHHHHHHh
Confidence 355566655544 5899999999988888877766
No 284
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=22.72 E-value=2.5e+02 Score=23.27 Aligned_cols=65 Identities=17% Similarity=0.269 Sum_probs=38.8
Q ss_pred EEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCC
Q 027065 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG 143 (229)
Q Consensus 68 vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~g 143 (229)
..+|+.+++++. |+.+.+++.. ......+++-+|=+.++....+..++..+.. .|.++.+....|
T Consensus 31 ~~liLvaR~~~k-----L~~la~~l~~----~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~~--~IdvLVNNAG~g 95 (265)
T COG0300 31 YNLILVARREDK-----LEALAKELED----KTGVEVEVIPADLSDPEALERLEDELKERGG--PIDVLVNNAGFG 95 (265)
T ss_pred CEEEEEeCcHHH-----HHHHHHHHHH----hhCceEEEEECcCCChhHHHHHHHHHHhcCC--cccEEEECCCcC
Confidence 677888988753 6666666654 2233456666655555555555555555544 588887755444
No 285
>PRK06683 hypothetical protein; Provisional
Probab=22.69 E-value=2.4e+02 Score=18.63 Aligned_cols=34 Identities=9% Similarity=0.093 Sum_probs=22.9
Q ss_pred ceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcC
Q 027065 103 TYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG 139 (229)
Q Consensus 103 ~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~ 139 (229)
...++++-...++++.+.+..+++.+. +.++..+
T Consensus 27 kaklViiA~Da~~~~~~~i~~~~~~~~---Vpv~~~~ 60 (82)
T PRK06683 27 IVKEVVIAEDADMRLTHVIIRTALQHN---IPITKVE 60 (82)
T ss_pred CeeEEEEECCCCHHHHHHHHHHHHhcC---CCEEEEC
Confidence 456666666677778888888877766 4444443
No 286
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=22.63 E-value=1.7e+02 Score=19.18 Aligned_cols=6 Identities=0% Similarity=0.689 Sum_probs=2.3
Q ss_pred CEEEEE
Q 027065 158 ELLLML 163 (229)
Q Consensus 158 d~v~~l 163 (229)
+|++++
T Consensus 54 p~~iii 59 (94)
T PF03129_consen 54 PFIIII 59 (94)
T ss_dssp SEEEEE
T ss_pred eEEEEE
Confidence 333333
No 287
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=22.62 E-value=3e+02 Score=22.82 Aligned_cols=50 Identities=18% Similarity=0.132 Sum_probs=29.9
Q ss_pred CCceEEEEEECCCCcc-hHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHH
Q 027065 101 SFTYEVLIIDDGSSDG-TKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGML 153 (229)
Q Consensus 101 ~~~~eiivvdd~s~d~-t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n~gl~ 153 (229)
..++|+++.||+++.. +.+.++++..+. .+..+..+...+-..+...-++
T Consensus 37 G~~ielv~~D~~~~p~~a~~~a~~li~~~---~v~aiiG~~~s~~~~a~~~~~~ 87 (332)
T cd06344 37 GKLLKVVIANDGNDPEIAKKVADELVKDP---EILGVVGHYSSDATLAALDIYQ 87 (332)
T ss_pred CCeEEEEEECCCCChHHHHHHHHHHhccc---CceEEEcCCCcHHHHHHHHHHh
Confidence 4579999999987654 557777776542 4666665433333334333333
No 288
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=22.51 E-value=68 Score=26.21 Aligned_cols=44 Identities=20% Similarity=0.374 Sum_probs=27.3
Q ss_pred eEEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHHHHHH
Q 027065 67 YISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDF 124 (229)
Q Consensus 67 ~vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~ 124 (229)
...+=|-..|+. +++.|++.++ .|.||++||+|=+-..++++.+
T Consensus 202 ~~~lkIGFLn~~--ve~~l~~Y~~------------~yDIVlv~D~tm~v~~~il~~I 245 (246)
T PF05822_consen 202 ENVLKIGFLNDK--VEENLEKYLE------------AYDIVLVDDQTMDVPNAILQSI 245 (246)
T ss_dssp SEEEEEEEE-SS--HHHHHHHHHC------------CSSEEEET--B-HHHHHHHHHH
T ss_pred ccEEEEEecccC--HHHHHHHHHh------------cCCEEEECCCCchHHHHHHHHh
Confidence 466667777865 4555666555 6899999998777666666543
No 289
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=22.39 E-value=3.8e+02 Score=20.82 Aligned_cols=49 Identities=18% Similarity=0.291 Sum_probs=23.4
Q ss_pred cEEEEEcCCCCCHHH-HHHHHHHhc-CC------CEEEEEcCCCCCChhhHHHHHHH
Q 027065 132 NVRIILLGRNHGKGE-AIRKGMLHS-RG------ELLLMLDADGATKVTDLEKLESQ 180 (229)
Q Consensus 132 ~i~vi~~~~~~gk~~-a~n~gl~~a-~~------d~v~~lD~D~~~~~~~l~~l~~~ 180 (229)
.+..+..+...||.. ++..+...+ .+ .-++++|.+..+++..+.++...
T Consensus 20 ~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~ 76 (226)
T cd01393 20 RITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVR 76 (226)
T ss_pred cEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHH
Confidence 455555555555543 333333322 22 45556666555555555544443
No 290
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=22.32 E-value=2.2e+02 Score=18.04 Aligned_cols=25 Identities=12% Similarity=0.284 Sum_probs=19.1
Q ss_pred ceEEEEEECCC-CcchHHHHHHHHHH
Q 027065 103 TYEVLIIDDGS-SDGTKRVAFDFVRK 127 (229)
Q Consensus 103 ~~eiivvdd~s-~d~t~~~~~~~~~~ 127 (229)
..++.|+|.-+ .|-|..++.++..+
T Consensus 32 g~~~~V~D~ktgeDiT~~iL~QIi~e 57 (64)
T PF07879_consen 32 GEDFKVVDAKTGEDITRSILLQIILE 57 (64)
T ss_pred CCeEEEEECCCCcccHHHHHHHHHHH
Confidence 57899999987 45588888876543
No 291
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=22.29 E-value=3.7e+02 Score=24.08 Aligned_cols=57 Identities=19% Similarity=0.367 Sum_probs=41.1
Q ss_pred EEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcch---HHHHHHHHHHcC
Q 027065 69 SLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGT---KRVAFDFVRKYT 129 (229)
Q Consensus 69 sviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t---~~~~~~~~~~~~ 129 (229)
-.+--++.....+..+|++.++.+... .+.+.++|++.||-++-. ...+++.++++.
T Consensus 337 ~fL~~~f~GGTD~~~~l~~al~~~k~~----~~~~adiv~ITDg~~~~~~~~~~~v~e~~k~~~ 396 (437)
T COG2425 337 EFLSYVFGGGTDITKALRSALEDLKSR----ELFKADIVVITDGEDERLDDFLRKVKELKKRRN 396 (437)
T ss_pred HHHhhhcCCCCChHHHHHHHHHHhhcc----cccCCCEEEEeccHhhhhhHHHHHHHHHHHHhh
Confidence 334444555578889999999888763 455699999999988777 666666666654
No 292
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=22.11 E-value=1.8e+02 Score=16.95 Aligned_cols=19 Identities=26% Similarity=0.559 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027065 14 VVVIILFGLISAIIFEAYR 32 (229)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~ 32 (229)
+..++++++....++..++
T Consensus 13 ~~~v~~~~~F~gi~~w~~~ 31 (49)
T PF05545_consen 13 IGTVLFFVFFIGIVIWAYR 31 (49)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 3333333333333333343
No 293
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=21.22 E-value=3.9e+02 Score=20.59 Aligned_cols=80 Identities=20% Similarity=0.174 Sum_probs=52.2
Q ss_pred EEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcC-CCCC--HHHHHHHHHHhcCC-CEEEEEcCCCCCChhhHHHHHHHH
Q 027065 106 VLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG-RNHG--KGEAIRKGMLHSRG-ELLLMLDADGATKVTDLEKLESQI 181 (229)
Q Consensus 106 iivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~-~~~g--k~~a~n~gl~~a~~-d~v~~lD~D~~~~~~~l~~l~~~~ 181 (229)
||+|-||.. -....++..+++.. .+.+..+ .|.. .+.-+-..++.|.+ +.++.+|+-.....+.=++.+..+
T Consensus 2 VIlvTDGD~-~A~ravE~aa~~iG---gRCIS~S~GNPT~lsG~elV~lIk~a~~DPV~VMfDD~G~~g~G~GE~Al~~v 77 (180)
T PF14097_consen 2 VILVTDGDE-YAKRAVEIAAKNIG---GRCISQSAGNPTPLSGEELVELIKQAPHDPVLVMFDDKGFIGEGPGEQALEYV 77 (180)
T ss_pred EEEEECChH-HHHHHHHHHHHHhC---cEEEeccCCCCCcCCHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccHHHHHHH
Confidence 788888632 23344444445444 4555543 2322 45567777888876 566678888888888889999999
Q ss_pred HHhCCcce
Q 027065 182 HAVGRKEY 189 (229)
Q Consensus 182 ~~~~~~~~ 189 (229)
..+++...
T Consensus 78 ~~h~~IeV 85 (180)
T PF14097_consen 78 ANHPDIEV 85 (180)
T ss_pred HcCCCceE
Confidence 98887543
No 294
>KOG0189 consensus Phosphoadenosine phosphosulfate reductase [Amino acid transport and metabolism]
Probab=21.19 E-value=4.4e+02 Score=21.14 Aligned_cols=93 Identities=17% Similarity=0.185 Sum_probs=58.6
Q ss_pred CCCceEEEEEECCC-CcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHhcCCCEEEEEcCCCCCC-hhhHHHH
Q 027065 100 KSFTYEVLIIDDGS-SDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATK-VTDLEKL 177 (229)
Q Consensus 100 ~~~~~eiivvdd~s-~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n~gl~~a~~d~v~~lD~D~~~~-~~~l~~l 177 (229)
...+++++.+|-+- ..+|.....+..++|+ ++++..... .++-+.|+=..++-+-+.=|++.... -..++.+
T Consensus 68 ~~~~~~l~~idT~~~~PeT~~l~d~VekkY~--~i~I~~~~p----d~~e~ea~~~~K~~~~~~E~~~q~~~~l~KV~P~ 141 (261)
T KOG0189|consen 68 TGRPFRLFFIDTLHHFPETLRLFDAVEKKYG--NIRIHVYFP----DAVEVEALFASKGGFSLWEDDHQEYDRLRKVEPA 141 (261)
T ss_pred cCCCceeEEeeccccChHHHHHHHHHHHhcC--ceEEEEEcc----hhHHHHHHHHhccchhheecCchhhhhhhhccHH
Confidence 45589999999998 4669999999999999 555544332 23556666667776666666666543 3335555
Q ss_pred HHHHHHhCCcceeeccceeec
Q 027065 178 ESQIHAVGRKEYNHGDSVTVD 198 (229)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~ 198 (229)
-+++....-.....|.+....
T Consensus 142 ~RA~k~L~v~A~~TGrRksQ~ 162 (261)
T KOG0189|consen 142 RRAYKGLNVKAVFTGRRKSQG 162 (261)
T ss_pred HHHhhccceeeEEecccccCC
Confidence 555555443344455444443
No 295
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=21.18 E-value=5.3e+02 Score=22.12 Aligned_cols=94 Identities=16% Similarity=0.099 Sum_probs=51.2
Q ss_pred CCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCC-CcchHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHh
Q 027065 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGS-SDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLH 154 (229)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s-~d~t~~~~~~~~~~~~~~~i~vi~~~~~~gk~~a~n~gl~~ 154 (229)
....-++.|++++... ...-+++||-+.. ...+.+.+.++-...+ -.++-.|..+..+.|+-.|...
T Consensus 32 ~~~Sllq~T~~R~~~l---------~~~~~~~vVtne~~~f~v~eql~e~~~~~~---~~illEP~gRnTApAIA~aa~~ 99 (333)
T COG0836 32 GDLSLLQQTVKRLAFL---------GDIEEPLVVTNEKYRFIVKEQLPEIDIENA---AGIILEPEGRNTAPAIALAALS 99 (333)
T ss_pred CCCcHHHHHHHHHhhc---------CCccCeEEEeCHHHHHHHHHHHhhhhhccc---cceEeccCCCCcHHHHHHHHHH
Confidence 3445667777776662 1246888886522 1223333333212222 1266666666666666666555
Q ss_pred cC---C-CEEEEEcCCCCCChh-hHHHHHHHH
Q 027065 155 SR---G-ELLLMLDADGATKVT-DLEKLESQI 181 (229)
Q Consensus 155 a~---~-d~v~~lD~D~~~~~~-~l~~l~~~~ 181 (229)
+. + ..++++-+|..+..+ .+.+.++..
T Consensus 100 ~~~~~~d~~~lVlpsDH~I~d~~af~~av~~A 131 (333)
T COG0836 100 ATAEGGDALVLVLPSDHVIADEEAFLNAVKKA 131 (333)
T ss_pred HHHhCCCcEEEEecCcceeccHHHHHHHHHHH
Confidence 42 2 489999999998553 444444443
No 296
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=21.01 E-value=2.7e+02 Score=20.30 Aligned_cols=45 Identities=13% Similarity=0.223 Sum_probs=27.0
Q ss_pred EEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECCCC----cchHHHHHHH
Q 027065 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSS----DGTKRVAFDF 124 (229)
Q Consensus 68 vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~----d~t~~~~~~~ 124 (229)
+.-...+.++.+.|.+.++...+ ..++||+.-|+. |-|.+.++++
T Consensus 43 v~~~~~v~Dd~~~i~~~l~~~~~------------~~DliIttGG~g~g~~D~t~~ai~~~ 91 (144)
T TIGR00177 43 VSRLGIVPDDPEEIREILRKAVD------------EADVVLTTGGTGVGPRDVTPEALEEL 91 (144)
T ss_pred EEEEeecCCCHHHHHHHHHHHHh------------CCCEEEECCCCCCCCCccHHHHHHHh
Confidence 44444555555555555555444 578899887763 5566666654
No 297
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=20.79 E-value=4.5e+02 Score=21.14 Aligned_cols=54 Identities=20% Similarity=0.185 Sum_probs=35.8
Q ss_pred CCCceEEEEEECCCC----cchHHHHHHHHHHcCC---CcEEEEEcCCCCCHHHHHHHHHH
Q 027065 100 KSFTYEVLIIDDGSS----DGTKRVAFDFVRKYTV---DNVRIILLGRNHGKGEAIRKGML 153 (229)
Q Consensus 100 ~~~~~eiivvdd~s~----d~t~~~~~~~~~~~~~---~~i~vi~~~~~~gk~~a~n~gl~ 153 (229)
..+.-++.|.-|||. ..-.+.++++..+.-. ..+++...+...|+++|+-.|+.
T Consensus 181 ~~~~~~v~VavDGSv~~~~p~f~~~l~~~l~~L~~~~~~~v~~~~~~dgsg~GAAi~AA~a 241 (243)
T PF03727_consen 181 GRPRREVTVAVDGSVYEKYPNFRERLQEALDELLPEEGCKVEFVLSEDGSGVGAAIAAAVA 241 (243)
T ss_dssp TCSSEEEEEEEESHHHHHSTTHHHHHHHHHHHHSTT-CEEEEEEE-SSTHHHHHHHHHHHH
T ss_pred cccCCceEEEEeCcceeeCHHHHHHHHHHHHHhcccccceEEEEEecCchHHHHHHHHHHh
Confidence 345679999999994 4445556555544321 36777777777789999877764
No 298
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=20.63 E-value=2.2e+02 Score=23.19 Aligned_cols=38 Identities=11% Similarity=0.093 Sum_probs=29.6
Q ss_pred EEEEEcCCCCCHHH-HHHHHHHhcC--CCEEEEEcCCCCCCh
Q 027065 133 VRIILLGRNHGKGE-AIRKGMLHSR--GELLLMLDADGATKV 171 (229)
Q Consensus 133 i~vi~~~~~~gk~~-a~n~gl~~a~--~d~v~~lD~D~~~~~ 171 (229)
+.+. .+...||.. +.|.|...++ |.=|+++|.|-..+-
T Consensus 5 Iav~-~KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq~~~ 45 (275)
T PRK13233 5 IAIY-GKGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKADS 45 (275)
T ss_pred EEEE-cCCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcCcCh
Confidence 4555 666788886 8999998883 777999999998653
No 299
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=20.58 E-value=5.4e+02 Score=21.93 Aligned_cols=80 Identities=15% Similarity=0.155 Sum_probs=49.0
Q ss_pred eecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEEECC--------------------CCcchHHHHHHHHHHcCCCc
Q 027065 73 PAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDG--------------------SSDGTKRVAFDFVRKYTVDN 132 (229)
Q Consensus 73 p~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~--------------------s~d~t~~~~~~~~~~~~~~~ 132 (229)
-+||++..+.+.++.+.+.. + |++|+.|- ..|.|.+++.+.+-.+...+
T Consensus 95 ~A~~~~givqravr~ik~~~----------p-~l~iitDvcLceyT~HGHcGil~~~~~V~ND~Tle~l~k~Avs~AeAG 163 (330)
T COG0113 95 EAYDPDGIVQRAVRAIKEAF----------P-ELVVITDVCLCEYTDHGHCGILDDGGYVDNDETLEILAKQAVSQAEAG 163 (330)
T ss_pred cccCCCChHHHHHHHHHHhC----------C-CeEEEeeecccCCcCCCccccccCCCeecchHHHHHHHHHHHHHHHcC
Confidence 46888888888888888732 2 55554432 24667777765543333224
Q ss_pred EEEEEcCC-CCCHHHHHHHHHHhcCCCEEEEE
Q 027065 133 VRIILLGR-NHGKGEAIRKGMLHSRGELLLML 163 (229)
Q Consensus 133 i~vi~~~~-~~gk~~a~n~gl~~a~~d~v~~l 163 (229)
..++--+. --|..+++..++..+...-+.++
T Consensus 164 AdivAPSdMMDGrV~aIR~aLd~ag~~~v~IM 195 (330)
T COG0113 164 ADIVAPSDMMDGRVGAIREALDEAGFIDVPIM 195 (330)
T ss_pred CCeecccccccchHHHHHHHHHHcCCCcceee
Confidence 55554332 25788888888887755544444
No 300
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=20.41 E-value=4.3e+02 Score=20.69 Aligned_cols=87 Identities=15% Similarity=0.182 Sum_probs=47.6
Q ss_pred EEEEEeecCCCCChHHHHHHHHHHHHHhhhhcCCCceEEEEE-ECCCCcchH-HHHHHHHHHcCCCcEEEEEcCCCCCHH
Q 027065 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLII-DDGSSDGTK-RVAFDFVRKYTVDNVRIILLGRNHGKG 145 (229)
Q Consensus 68 vsviip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivv-dd~s~d~t~-~~~~~~~~~~~~~~i~vi~~~~~~gk~ 145 (229)
|.|++|..+.. +.....+.+.+...+. .+++.++ +...+.... +.++++..+.+ ..-++.........
T Consensus 1 I~vi~~~~~~~-~~~~~~~g~~~~a~~~-------g~~~~~~~~~~~d~~~q~~~i~~~i~~~~--d~Iiv~~~~~~~~~ 70 (257)
T PF13407_consen 1 IGVIVPSMDNP-FWQQVIKGAKAAAKEL-------GYEVEIVFDAQNDPEEQIEQIEQAISQGV--DGIIVSPVDPDSLA 70 (257)
T ss_dssp EEEEESSSSSH-HHHHHHHHHHHHHHHH-------TCEEEEEEESTTTHHHHHHHHHHHHHTTE--SEEEEESSSTTTTH
T ss_pred cEEEeCCCCCH-HHHHHHHHHHHHHHHc-------CCEEEEeCCCCCCHHHHHHHHHHHHHhcC--CEEEecCCCHHHHH
Confidence 46777777666 6666666666655543 5677774 666665433 66666665544 33333322222333
Q ss_pred HHHHHHHHhcCCCEEEEEcCC
Q 027065 146 EAIRKGMLHSRGELLLMLDAD 166 (229)
Q Consensus 146 ~a~n~gl~~a~~d~v~~lD~D 166 (229)
..++.+.+ .|=-|+++|.+
T Consensus 71 ~~l~~~~~--~gIpvv~~d~~ 89 (257)
T PF13407_consen 71 PFLEKAKA--AGIPVVTVDSD 89 (257)
T ss_dssp HHHHHHHH--TTSEEEEESST
T ss_pred HHHHHHhh--cCceEEEEecc
Confidence 44443222 24467777777
No 301
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=20.40 E-value=4.4e+02 Score=22.06 Aligned_cols=37 Identities=24% Similarity=0.192 Sum_probs=24.6
Q ss_pred EEEEcCCCCCHHH-HHHHHHHhcC-CCEEEEEcCCCCCC
Q 027065 134 RIILLGRNHGKGE-AIRKGMLHSR-GELLLMLDADGATK 170 (229)
Q Consensus 134 ~vi~~~~~~gk~~-a~n~gl~~a~-~d~v~~lD~D~~~~ 170 (229)
.++..+...||.. +.|.|...++ |.=++++|.|....
T Consensus 97 av~~~KGGvGkTT~a~nLA~~la~~g~~VlLvD~D~~~~ 135 (322)
T TIGR03815 97 AVIGGRGGAGASTLAAALALAAARHGLRTLLVDADPWGG 135 (322)
T ss_pred EEEcCCCCCcHHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence 3333444567765 7888887764 55689999996643
No 302
>PLN00176 galactinol synthase
Probab=20.22 E-value=2.4e+02 Score=24.18 Aligned_cols=26 Identities=15% Similarity=0.075 Sum_probs=18.3
Q ss_pred HHhcCCCEEEEEcCCCCCChhhHHHHH
Q 027065 152 MLHSRGELLLMLDADGATKVTDLEKLE 178 (229)
Q Consensus 152 l~~a~~d~v~~lD~D~~~~~~~l~~l~ 178 (229)
.+....+=|+++|+|..+..+ +.+|.
T Consensus 108 w~l~~ydkvlyLDaD~lv~~n-id~Lf 133 (333)
T PLN00176 108 WEFVEYSKMIYLDGDIQVFEN-IDHLF 133 (333)
T ss_pred ccccccceEEEecCCEEeecC-hHHHh
Confidence 344578999999999997543 34444
No 303
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=20.18 E-value=3.9e+02 Score=20.16 Aligned_cols=101 Identities=14% Similarity=0.172 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhhhhcCCCceEEEEEECCCCcchHHH-HHHHHHHcCCCcEEEEE-cCCCCCHH--HHHHHHHHhcCCC
Q 027065 83 GALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRV-AFDFVRKYTVDNVRIIL-LGRNHGKG--EAIRKGMLHSRGE 158 (229)
Q Consensus 83 ~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~-~~~~~~~~~~~~i~vi~-~~~~~gk~--~a~n~gl~~a~~d 158 (229)
+.+..+++.... .+..|.++ |+++++.+. .+.+.++|| ++.++. ...-.+.. .++-..++.+..|
T Consensus 33 dl~~~ll~~~~~-------~~~~v~ll--G~~~~~~~~~~~~l~~~yp--~l~i~g~~~g~~~~~~~~~i~~~I~~~~pd 101 (171)
T cd06533 33 DLMPALLELAAQ-------KGLRVFLL--GAKPEVLEKAAERLRARYP--GLKIVGYHHGYFGPEEEEEIIERINASGAD 101 (171)
T ss_pred HHHHHHHHHHHH-------cCCeEEEE--CCCHHHHHHHHHHHHHHCC--CcEEEEecCCCCChhhHHHHHHHHHHcCCC
Confidence 445566665443 15788888 677666644 456778888 788776 33334432 2345566667777
Q ss_pred EEEEEcCCCCCChhhHHHHHHHHHHhCCcceeeccceee
Q 027065 159 LLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTV 197 (229)
Q Consensus 159 ~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 197 (229)
+|++ --...-...|+.+..+.+ ......+.|...+.
T Consensus 102 iv~v-glG~PkQE~~~~~~~~~l--~~~v~~~vG~~~d~ 137 (171)
T cd06533 102 ILFV-GLGAPKQELWIARHKDRL--PVPVAIGVGGSFDF 137 (171)
T ss_pred EEEE-ECCCCHHHHHHHHHHHHC--CCCEEEEeceeeEe
Confidence 6655 344444556666655555 23445555654443
No 304
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=20.07 E-value=2.8e+02 Score=18.39 Aligned_cols=27 Identities=4% Similarity=0.074 Sum_probs=19.4
Q ss_pred ceEEEEEECCCCcchHHHHHHHHHHcC
Q 027065 103 TYEVLIIDDGSSDGTKRVAFDFVRKYT 129 (229)
Q Consensus 103 ~~eiivvdd~s~d~t~~~~~~~~~~~~ 129 (229)
...++++-...++++.+.+..+++.+.
T Consensus 24 kakLViiA~Da~~~~~k~i~~~c~~~~ 50 (82)
T PRK13601 24 NVLQVYIAKDAEEHVTKKIKELCEEKS 50 (82)
T ss_pred CeeEEEEeCCCCHHHHHHHHHHHHhCC
Confidence 455666555566789888888887766
Done!