BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027066
         (229 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A0RX10|SYA_CENSY Alanine--tRNA ligase OS=Cenarchaeum symbiosum (strain A) GN=alaS
           PE=3 SV=1
          Length = 894

 Score = 32.0 bits (71), Expect = 3.8,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 139 GAEACLLAGSARNAYHTKYRKIFGGGDLSCATLRKGVFAAGAALTLLSLAGS 190
           G   CL AG     +HT + K     D +CA     +F AG  + +L+ AGS
Sbjct: 790 GGRRCLAAGIHDEYFHTSFGKKLVAMDPACAYC--AIFEAGPTVRVLAYAGS 839


>sp|A9HI81|UPPP_GLUDA Undecaprenyl-diphosphatase OS=Gluconacetobacter diazotrophicus
           (strain ATCC 49037 / DSM 5601 / PAl5) GN=uppP PE=3 SV=1
          Length = 285

 Score = 31.2 bits (69), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 8/119 (6%)

Query: 85  STVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFI----VSWVSFLGA 140
             V G  A   L  + A + G+ +CL F  G+    ++   A+F  +     +  SFL A
Sbjct: 148 QPVQGGYAIASLTYADAAIIGLWQCLAFLPGISRSGATIIGALFRGLNHEGAARFSFLMA 207

Query: 141 EACLLAGSARNAYHTKYRKIFGGGDLSCATLRKGVFAAGAALTLLSLAGSILYYWAHTR 199
           +  ++A + R A H ++  I   G +  AT+   V A  A   L S A  + Y+  H R
Sbjct: 208 QPVIIAATVREALHMRHVAI-PPGQMQVATIGAMVAAVTA---LASTAFLMRYFHNHER 262


>sp|P03178|GK_HHV1K Glycoprotein K OS=Human herpesvirus 1 (strain KOS) GN=gK PE=3 SV=1
          Length = 338

 Score = 31.2 bits (69), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 35/79 (44%)

Query: 85  STVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACL 144
           STV  ++A+GL+L+   V        C      TGT++ T  V+  +   + FLGA    
Sbjct: 11  STVVLITAYGLVLVWYTVFGASPLHRCIYAVRPTGTNNDTALVWMKMNQTLLFLGAPTHP 70

Query: 145 LAGSARNAYHTKYRKIFGG 163
             G  RN  H  Y  +  G
Sbjct: 71  PNGGWRNHAHISYANLIAG 89


>sp|Q07005|GK_HHV19 Glycoprotein K OS=Human herpesvirus 1 (strain R19) GN=gK PE=3 SV=1
          Length = 338

 Score = 31.2 bits (69), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 35/79 (44%)

Query: 85  STVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACL 144
           STV  ++A+GL+L+   V        C      TGT++ T  V+  +   + FLGA    
Sbjct: 11  STVVLITAYGLVLVWYTVFGASPLHRCIYAVRPTGTNNDTALVWMKMNQTLLFLGAPTHP 70

Query: 145 LAGSARNAYHTKYRKIFGG 163
             G  RN  H  Y  +  G
Sbjct: 71  PNGGWRNHAHISYANLIAG 89


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.326    0.137    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,636,132
Number of Sequences: 539616
Number of extensions: 3046189
Number of successful extensions: 8167
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 8155
Number of HSP's gapped (non-prelim): 14
length of query: 229
length of database: 191,569,459
effective HSP length: 113
effective length of query: 116
effective length of database: 130,592,851
effective search space: 15148770716
effective search space used: 15148770716
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (27.3 bits)