Query 027066
Match_columns 229
No_of_seqs 111 out of 216
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 04:29:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027066.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027066hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06749 DUF1218: Protein of u 100.0 7.6E-30 1.7E-34 198.1 8.4 96 91-189 1-97 (97)
2 PF05478 Prominin: Prominin; 87.1 1.8 3.9E-05 44.8 7.1 73 77-151 406-491 (806)
3 cd07912 Tweety_N N-terminal do 82.1 6.7 0.00014 38.3 8.1 30 85-114 38-68 (418)
4 PF05360 YiaAB: yiaA/B two hel 81.3 2.3 4.9E-05 29.9 3.5 44 130-188 2-45 (53)
5 PF07344 Amastin: Amastin surf 75.0 25 0.00055 29.2 8.6 88 6-144 67-155 (155)
6 PF09788 Tmemb_55A: Transmembr 73.6 7.2 0.00016 35.9 5.3 45 106-151 177-222 (256)
7 PF04906 Tweety: Tweety; Inte 67.5 14 0.0003 35.6 6.1 31 88-118 22-52 (406)
8 PF05478 Prominin: Prominin; 66.7 23 0.00051 36.8 7.9 25 122-146 138-163 (806)
9 KOG4433 Tweety transmembrane/c 63.4 8.8 0.00019 38.4 3.9 55 84-138 41-99 (526)
10 PF07062 Clc-like: Clc-like; 58.2 1.3E+02 0.0029 26.7 10.1 94 88-193 103-203 (211)
11 PF07344 Amastin: Amastin surf 51.9 95 0.0021 25.7 7.8 92 76-191 53-149 (155)
12 PRK11383 hypothetical protein; 47.4 45 0.00098 28.4 5.1 25 127-152 10-34 (145)
13 PRK11383 hypothetical protein; 45.3 49 0.0011 28.2 5.0 58 127-205 73-130 (145)
14 PTZ00201 amastin surface glyco 45.2 1.2E+02 0.0025 26.8 7.6 96 77-193 66-166 (192)
15 PF11169 DUF2956: Protein of u 44.1 22 0.00048 28.6 2.6 18 125-142 85-102 (103)
16 PF01284 MARVEL: Membrane-asso 36.2 2E+02 0.0043 22.1 14.5 62 127-193 80-141 (144)
17 KOG1292 Xanthine/uracil transp 35.4 58 0.0013 32.8 4.6 65 127-202 210-298 (510)
18 PF06800 Sugar_transport: Suga 34.3 1.1E+02 0.0024 28.3 5.9 26 133-158 102-127 (269)
19 COG4682 Predicted membrane pro 33.4 1.1E+02 0.0024 25.6 5.2 47 124-185 7-53 (128)
20 PRK11403 hypothetical protein; 28.4 1.2E+02 0.0027 24.8 4.6 46 127-187 61-106 (113)
21 PF13828 DUF4190: Domain of un 27.6 2.2E+02 0.0047 20.6 5.4 56 85-141 5-60 (62)
22 PF14798 Ca_hom_mod: Calcium h 26.2 1.2E+02 0.0026 27.6 4.7 63 81-155 13-75 (251)
23 PF00822 PMP22_Claudin: PMP-22 25.0 1.7E+02 0.0036 23.3 5.0 57 87-157 75-131 (166)
24 PF13903 Claudin_2: PMP-22/EMP 24.7 3.5E+02 0.0075 21.2 9.3 27 125-151 103-129 (172)
25 KOG4684 Uncharacterized conser 23.0 1.1E+02 0.0024 28.1 3.8 45 101-145 184-229 (275)
26 PF10267 Tmemb_cc2: Predicted 22.9 1.6E+02 0.0035 28.7 5.1 46 86-132 338-383 (395)
27 KOG4016 Synaptic vesicle prote 21.3 6.4E+02 0.014 23.1 12.6 111 74-201 55-171 (233)
28 PF07271 Cytadhesin_P30: Cytad 21.1 2.3E+02 0.0049 26.6 5.5 25 171-195 72-96 (279)
No 1
>PF06749 DUF1218: Protein of unknown function (DUF1218); InterPro: IPR009606 This family contains hypothetical plant proteins of unknown function. Family members contain a number of conserved cysteine residues.
Probab=99.96 E-value=7.6e-30 Score=198.11 Aligned_cols=96 Identities=45% Similarity=0.688 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCCCC-CCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCcccc
Q 027066 91 SAFGLLLISQAVVNGVTRCLCFGKGLVT-GTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGDLSCA 169 (229)
Q Consensus 91 ~A~v~Ll~aqvv~~~~~~C~Ccg~~~~~-~~~~r~~ai~~~v~SWi~F~IAe~~Ll~Ga~~N~~htk~~~~~~~~~~~C~ 169 (229)
+|++||+++|+++|+++||.||+++.+| +..+|++++++|++||++|+|||++|++|+++|++|+|++.+. +++|+
T Consensus 1 ~A~~~L~~aqvi~~~~~gC~cc~~~~~~~~~~~r~~a~~~~v~SWi~f~ia~~~ll~ga~~n~~~~~~~~~~---~~~C~ 77 (97)
T PF06749_consen 1 AAAVFLLAAQVIANVAGGCLCCGKRVSPKSSRNRTLAVVFFVLSWIVFIIAEALLLAGASMNARHTKGNGWF---NPSCY 77 (97)
T ss_pred CHHHHHHHHHHHHHHHhcceEeCCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcccccccccccc---CCccc
Confidence 4899999999999999999999998877 5689999999999999999999999999999999999998775 77999
Q ss_pred cccccchhhhhHHHHHHHHH
Q 027066 170 TLRKGVFAAGAALTLLSLAG 189 (229)
Q Consensus 170 ~~r~GvFaagAvl~l~t~~~ 189 (229)
++|+|+|++||+|+|+|++|
T Consensus 78 ~~k~GvF~~~a~l~l~t~~f 97 (97)
T PF06749_consen 78 TVKKGVFAGGAVLSLVTALF 97 (97)
T ss_pred ccCCceeeHhHHHHHHHHhC
Confidence 99999999999999999875
No 2
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=87.11 E-value=1.8 Score=44.85 Aligned_cols=73 Identities=21% Similarity=0.207 Sum_probs=44.2
Q ss_pred eeecCCChhh-hhHHHHHHHHHHHHHHHHHHhcccccc-CC-CCCC-------CCchH--HH-HHHHHHHHHHHHHHHHH
Q 027066 77 YCVYSTDAST-VYGLSAFGLLLISQAVVNGVTRCLCFG-KG-LVTG-------TSSTT--WA-VFFFIVSWVSFLGAEAC 143 (229)
Q Consensus 77 ~C~Ypsd~A~-~lGv~A~v~Ll~aqvv~~~~~~C~Ccg-~~-~~~~-------~~~r~--~a-i~~~v~SWi~F~IAe~~ 143 (229)
+-+|.++.-. +++++..++|++ ++....--|.||| ++ ..|+ .+.+. .+ ++.|+++|+..+++.+.
T Consensus 406 ~~~y~~yR~~~~lil~~~llLIv--~~~~lGLl~G~~G~~~~~~p~~r~c~~~tGg~~Lm~gv~~~Flf~~~l~l~~~~~ 483 (806)
T PF05478_consen 406 YEKYDSYRWIVGLILCCVLLLIV--LCLLLGLLCGCCGYRRRADPTDRGCSSNTGGNFLMAGVGLSFLFSWFLMLLVLFY 483 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhccCCCCCCCcccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555444 445555555544 3333444578898 32 1221 22332 22 66789999999999999
Q ss_pred HHHhhhhc
Q 027066 144 LLAGSARN 151 (229)
Q Consensus 144 Ll~Ga~~N 151 (229)
|+.|....
T Consensus 484 Fl~G~~~~ 491 (806)
T PF05478_consen 484 FLVGGNTY 491 (806)
T ss_pred HHHHhhhh
Confidence 99999763
No 3
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=82.12 E-value=6.7 Score=38.25 Aligned_cols=30 Identities=13% Similarity=0.071 Sum_probs=17.1
Q ss_pred hhhh-HHHHHHHHHHHHHHHHHHhccccccC
Q 027066 85 STVY-GLSAFGLLLISQAVVNGVTRCLCFGK 114 (229)
Q Consensus 85 A~~l-Gv~A~v~Ll~aqvv~~~~~~C~Ccg~ 114 (229)
|+++ |..|++.+++.-++..+...|.||.+
T Consensus 38 Sv~~~a~iaavwlil~ll~ll~~~~~~CCcr 68 (418)
T cd07912 38 SLLILASIPAACLILSLLFLLVYLITRCCDR 68 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 5555 55555555555566665555666633
No 4
>PF05360 YiaAB: yiaA/B two helix domain; InterPro: IPR008024 This domain consists of two transmembrane helices and a conserved linking section.
Probab=81.31 E-value=2.3 Score=29.86 Aligned_cols=44 Identities=32% Similarity=0.307 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCcccccccccchhhhhHHHHHHHH
Q 027066 130 FIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGDLSCATLRKGVFAAGAALTLLSLA 188 (229)
Q Consensus 130 ~v~SWi~F~IAe~~Ll~Ga~~N~~htk~~~~~~~~~~~C~~~r~GvFaagAvl~l~t~~ 188 (229)
...+|+.|+++..+++.|.- |....- --||.++.+-.+++.+++
T Consensus 2 ~~~~~~~f~i~~~~~~iGl~-~~~~~l--------------~~KGy~~~~~l~~l~s~~ 45 (53)
T PF05360_consen 2 VGQSWISFGISIVLMLIGLW-NAPLDL--------------SEKGYYAMGLLFLLFSAF 45 (53)
T ss_pred hhHHHHHHHHHHHHHHHHHH-hCCCCH--------------HHHHHHHHHHHHHHHHHH
Confidence 46799999999999999986 654332 268889888888877654
No 5
>PF07344 Amastin: Amastin surface glycoprotein; InterPro: IPR009944 This family contains the eukaryotic surface glycoprotein amastin (approximately 180 residues long).In Trypanosoma cruzi, amastin is particularly abundant during the amastigote stage.
Probab=74.95 E-value=25 Score=29.15 Aligned_cols=88 Identities=17% Similarity=0.057 Sum_probs=56.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcccccccchhhhhhhhcccccccccchhhhhhhhccceeeecCCCCcceeecCCChh
Q 027066 6 SIVAVVTALHLIAFVFAVGAERRRSTVLFTHSILYIHKFFENYLSFSGSLIFWVFLCLKAKVVPDQYDEMTYCVYSTDAS 85 (229)
Q Consensus 6 ~v~~vV~~LgliAfiLgi~AE~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~C~Ypsd~A 85 (229)
...++.++++..|+++|+..=...+. .+-+.
T Consensus 67 afaIisi~~~~~a~v~g~~~l~~~~~-------------------------------------------------~r~v~ 97 (155)
T PF07344_consen 67 AFAIISIFVYGAAFVLGVLLLCCCSC-------------------------------------------------LRWVC 97 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-------------------------------------------------HHHHH
Confidence 44567788899999999986554332 22345
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCch-HHHHHHHHHHHHHHHHHHHHH
Q 027066 86 TVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSST-TWAVFFFIVSWVSFLGAEACL 144 (229)
Q Consensus 86 ~~lGv~A~v~Ll~aqvv~~~~~~C~Ccg~~~~~~~~~r-~~ai~~~v~SWi~F~IAe~~L 144 (229)
..|.+.+++++++.=++....=.=.-|+ +..+. ..+ -.+-.+++++|+..+++.+.|
T Consensus 98 l~L~~~~~~~~~v~wa~~v~~Y~~~~C~-~~~~~-~~~yg~GF~L~v~aw~l~~i~ii~L 155 (155)
T PF07344_consen 98 LVLNIVGIVTLLVVWALMVVVYYGGFCG-ALKSR-GYKYGAGFALFVAAWCLDIINIIFL 155 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCc-CccCC-CcccCccHHHHHHHHHHHHHHHHhC
Confidence 7788888888877765543332223333 22222 223 367889999999999988764
No 6
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=73.56 E-value=7.2 Score=35.90 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=32.0
Q ss_pred HhccccccCCCCCC-CCchHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 027066 106 VTRCLCFGKGLVTG-TSSTTWAVFFFIVSWVSFLGAEACLLAGSARN 151 (229)
Q Consensus 106 ~~~C~Ccg~~~~~~-~~~r~~ai~~~v~SWi~F~IAe~~Ll~Ga~~N 151 (229)
..+|+-|+|-.+-+ .-.|..+++||+++-+++++|..+ .+|+-..
T Consensus 177 lARCPHCrKvSSVG~~faRkR~i~f~llgllfliiaigl-tvGT~~~ 222 (256)
T PF09788_consen 177 LARCPHCRKVSSVGPRFARKRAIIFFLLGLLFLIIAIGL-TVGTWTY 222 (256)
T ss_pred cccCCCCceeccccchHhhhHHHHHHHHHHHHHHHHHHH-hhhhHHH
Confidence 47999998765444 357889999999998877766554 4566543
No 7
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=67.48 E-value=14 Score=35.61 Aligned_cols=31 Identities=16% Similarity=0.071 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhccccccCCCCC
Q 027066 88 YGLSAFGLLLISQAVVNGVTRCLCFGKGLVT 118 (229)
Q Consensus 88 lGv~A~v~Ll~aqvv~~~~~~C~Ccg~~~~~ 118 (229)
+|..+++.|.+.-++..+-.-|.||.|+..+
T Consensus 22 la~v~~~~l~l~Ll~ll~yl~~~CC~r~~~~ 52 (406)
T PF04906_consen 22 LASVAAACLALSLLFLLIYLICRCCCRRPRE 52 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCc
Confidence 3666667777777776676777777665444
No 8
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=66.66 E-value=23 Score=36.84 Aligned_cols=25 Identities=8% Similarity=0.400 Sum_probs=15.1
Q ss_pred ch-HHHHHHHHHHHHHHHHHHHHHHH
Q 027066 122 ST-TWAVFFFIVSWVSFLGAEACLLA 146 (229)
Q Consensus 122 ~r-~~ai~~~v~SWi~F~IAe~~Ll~ 146 (229)
.| .+++++++++.+..+.....+++
T Consensus 138 ~R~~l~~~L~~~~~~il~g~i~aF~~ 163 (806)
T PF05478_consen 138 RRGCLGILLLLLTLIILFGVICAFVA 163 (806)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35 47777777776665544444444
No 9
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=63.41 E-value=8.8 Score=38.42 Aligned_cols=55 Identities=15% Similarity=0.092 Sum_probs=35.2
Q ss_pred hhhhh-HHHHHHHHHHHHHHHHHHhccccccCCCCCC---CCchHHHHHHHHHHHHHHH
Q 027066 84 ASTVY-GLSAFGLLLISQAVVNGVTRCLCFGKGLVTG---TSSTTWAVFFFIVSWVSFL 138 (229)
Q Consensus 84 ~A~~l-Gv~A~v~Ll~aqvv~~~~~~C~Ccg~~~~~~---~~~r~~ai~~~v~SWi~F~ 138 (229)
+|..+ |..|+.+|.+.-+..-+.--|.||.|+..++ ...|-....++|++-+++.
T Consensus 41 QaL~lla~l~aa~l~l~Ll~ll~yli~~cC~Rr~~~~~~~~~~~c~s~~l~I~tl~cca 99 (526)
T KOG4433|consen 41 QALLLLAALAAACLGLSLLFLLFYLICRCCCRRETTGRKRRRVRCLSWSLIIATLMCCA 99 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCCcceeeehHHHHHHHHHH
Confidence 45544 7778888888888888888888886665333 2233344555666666554
No 10
>PF07062 Clc-like: Clc-like; InterPro: IPR010761 Clc proteins are a nine-member gene family of chloride channels that have diverse roles in the plasma membrane and in intracellular organelles, especially membrane excitability and the maintenance of osmotic balance [, ]. This family contains a number of Clc-like proteins that are approximately 250 residues long and their homologues. ; GO: 0016021 integral to membrane
Probab=58.24 E-value=1.3e+02 Score=26.73 Aligned_cols=94 Identities=13% Similarity=0.090 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHHHHHHHHh---ccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCC
Q 027066 88 YGLSAFGLLLISQAVVNGVT---RCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGG 164 (229)
Q Consensus 88 lGv~A~v~Ll~aqvv~~~~~---~C~Ccg~~~~~~~~~r~~ai~~~v~SWi~F~IAe~~Ll~Ga~~N~~htk~~~~~~~~ 164 (229)
-=.+.+++++++++++..+. .|.+|.++. -..-.++.++++++..+|.+.+..-+-+-. +|...+
T Consensus 103 Wh~AvLil~~~s~lf~~lsi~~~iCa~c~~~~------ai~~~v~~~ia~l~S~~g~~iF~~~a~~~d----~r~~~g-- 170 (211)
T PF07062_consen 103 WHKAVLILISFSMLFALLSICFGICAPCHPSF------AIFYTVLVFIAALLSLIGLGIFFFNAHMVD----NRFVQG-- 170 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hheeec--
Confidence 34667777778887655544 454453321 144455667778888888888877665422 111111
Q ss_pred Cccccccccc----chhhhhHHHHHHHHHHHHH
Q 027066 165 DLSCATLRKG----VFAAGAALTLLSLAGSILY 193 (229)
Q Consensus 165 ~~~C~~~r~G----vFaagAvl~l~t~~~~i~y 193 (229)
...=|.-|-| +..+|..+-+++.++++++
T Consensus 171 ~~~tYeq~~G~afYl~~~g~l~~~~a~l~sv~~ 203 (211)
T PF07062_consen 171 IVGTYEQHYGYAFYLHLAGSLLLLFAFLFSVFV 203 (211)
T ss_pred ccceEEEeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111122223 3456666666666666653
No 11
>PF07344 Amastin: Amastin surface glycoprotein; InterPro: IPR009944 This family contains the eukaryotic surface glycoprotein amastin (approximately 180 residues long).In Trypanosoma cruzi, amastin is particularly abundant during the amastigote stage.
Probab=51.93 E-value=95 Score=25.73 Aligned_cols=92 Identities=16% Similarity=0.131 Sum_probs=55.4
Q ss_pred ceeecCCC---hhhhhHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 027066 76 TYCVYSTD---ASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNA 152 (229)
Q Consensus 76 ~~C~Ypsd---~A~~lGv~A~v~Ll~aqvv~~~~~~C~Ccg~~~~~~~~~r~~ai~~~v~SWi~F~IAe~~Ll~Ga~~N~ 152 (229)
..|...++ .+-++.+.+.++.+++-+++-..-. || ...|...+.+.++++++..|.. +.+..-
T Consensus 53 ~~C~~~~~~f~aa~afaIisi~~~~~a~v~g~~~l~--~~-------~~~r~v~l~L~~~~~~~~~v~w-----a~~v~~ 118 (155)
T PF07344_consen 53 FNCPQRRSRFRAAQAFAIISIFVYGAAFVLGVLLLC--CC-------SCLRWVCLVLNIVGIVTLLVVW-----ALMVVV 118 (155)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hh-------hhHHHHHHHHHHHHHHHHHHHH-----HHHHHH
Confidence 47876666 5667788888888888777666443 33 1567777777777777765544 444444
Q ss_pred cccccccccCCCCcccccccccc--hhhhhHHHHHHHHHHH
Q 027066 153 YHTKYRKIFGGGDLSCATLRKGV--FAAGAALTLLSLAGSI 191 (229)
Q Consensus 153 ~htk~~~~~~~~~~~C~~~r~Gv--FaagAvl~l~t~~~~i 191 (229)
|+. +.|...+++- |+.|=.|.+++=++.+
T Consensus 119 Y~~----------~~C~~~~~~~~~yg~GF~L~v~aw~l~~ 149 (155)
T PF07344_consen 119 YYG----------GFCGALKSRGYKYGAGFALFVAAWCLDI 149 (155)
T ss_pred Hcc----------CCCcCccCCCcccCccHHHHHHHHHHHH
Confidence 442 2676655444 4554444444444433
No 12
>PRK11383 hypothetical protein; Provisional
Probab=47.45 E-value=45 Score=28.36 Aligned_cols=25 Identities=40% Similarity=0.638 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcc
Q 027066 127 VFFFIVSWVSFLGAEACLLAGSARNA 152 (229)
Q Consensus 127 i~~~v~SWi~F~IAe~~Ll~Ga~~N~ 152 (229)
-.|..+||+.++++...+++|- +|+
T Consensus 10 ~af~~~sw~al~~g~~~y~iGL-wnA 34 (145)
T PRK11383 10 PAFSIVSWIALVGGIVTYLLGL-WNA 34 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhc
Confidence 3567799999999999999997 455
No 13
>PRK11383 hypothetical protein; Provisional
Probab=45.28 E-value=49 Score=28.16 Aligned_cols=58 Identities=19% Similarity=0.299 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCcccccccccchhhhhHHHHHHHHHHHHHHHHHhhcCCCCC
Q 027066 127 VFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGDLSCATLRKGVFAAGAALTLLSLAGSILYYWAHTRADTGGW 205 (229)
Q Consensus 127 i~~~v~SWi~F~IAe~~Ll~Ga~~N~~htk~~~~~~~~~~~C~~~r~GvFaagAvl~l~t~~~~i~yYv~~~~a~~~~~ 205 (229)
-++.-+||..++++..+|++|. +|+.-. .--||++..+=+++|+..+. ...+.||..+
T Consensus 73 ~~f~~~cw~a~l~~i~LL~iGL-wNA~l~--------------lsEKGfY~~af~lsLFgai~------vQKn~RD~~~ 130 (145)
T PRK11383 73 SIYYMTCLTVFIISVALLMVGL-WNATLL--------------LSEKGFYGLAFFLSLFGAVA------VQKNIRDAGI 130 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hcCCcc--------------hhhhhHHHHHHHHHHHHHHH------HHhhhhhhhh
Confidence 3677789999999999999997 576322 33689999888888877653 2455566543
No 14
>PTZ00201 amastin surface glycoprotein; Provisional
Probab=45.17 E-value=1.2e+02 Score=26.78 Aligned_cols=96 Identities=14% Similarity=0.063 Sum_probs=54.6
Q ss_pred eeecCCC---hhhhhHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 027066 77 YCVYSTD---ASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAY 153 (229)
Q Consensus 77 ~C~Ypsd---~A~~lGv~A~v~Ll~aqvv~~~~~~C~Ccg~~~~~~~~~r~~ai~~~v~SWi~F~IAe~~Ll~Ga~~N~~ 153 (229)
.|.-.++ .|-++.+.|.++..+|-+++-.... ||. ..|+...++-+++= +-.+..|+.+.-.|
T Consensus 66 ~C~~rr~~Fr~aqAfaIISI~v~~aA~vlg~~~l~--cc~-------~lr~vcl~Lnivg~-----vt~~VvWa~mv~~Y 131 (192)
T PTZ00201 66 NCPARILQFRVAQALAVISILVYGAAFVLGLVLLY--GCT-------IHRWVCLALNIVGA-----VTLGVVWAAMVVTY 131 (192)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--ccc-------hHHHHHHHHHHHHH-----HHHheeeeeEEEEE
Confidence 5776665 5667888888888888777665553 331 34555444444433 33445566666555
Q ss_pred ccccccccCCCCcccccccc-c-chhhhhHHHHHHHHHHHHH
Q 027066 154 HTKYRKIFGGGDLSCATLRK-G-VFAAGAALTLLSLAGSILY 193 (229)
Q Consensus 154 htk~~~~~~~~~~~C~~~r~-G-vFaagAvl~l~t~~~~i~y 193 (229)
++++ .+.|...|+ + -|++|=.|-+++-.+.++-
T Consensus 132 ~~~~-------~~~C~~~~~~~~~yGaGF~Llv~AW~L~iin 166 (192)
T PTZ00201 132 YKDD-------GPLCPRVRDMGYRFGTGFALLVVAWILDILN 166 (192)
T ss_pred EcCC-------CccccccccCCCCccCcHHHHHHHHHHHHHH
Confidence 5431 236887777 4 3555544544444444433
No 15
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=44.08 E-value=22 Score=28.61 Aligned_cols=18 Identities=17% Similarity=0.440 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027066 125 WAVFFFIVSWVSFLGAEA 142 (229)
Q Consensus 125 ~ai~~~v~SWi~F~IAe~ 142 (229)
+.-.++++||+-|++-..
T Consensus 85 LPW~LL~lSW~gF~~Y~~ 102 (103)
T PF11169_consen 85 LPWGLLVLSWIGFIAYIF 102 (103)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 445589999999986553
No 16
>PF01284 MARVEL: Membrane-associating domain; InterPro: IPR021128 This entry represents the ~130-residue MARVEL (MAL and related proteins for vesicle trafficking and membrane link) domain. The MARVEL domain is a module with a four transmembrane-helix architecture that has been identified in proteins of the myelin and lymphocyte (MAL), physins, gyrins and occludin families. All described MARVEL domain-containing proteins are consistent with the M-shaped topology: four transmembrane-helix region architecture with cytoplasmic N- and C-terminal regions. Their function could be related to cholesterol-rich membrane apposition events in a variety of cellular processes, such as biogenesis of vesicular transport carriers or tight junction regulation [].
Probab=36.24 E-value=2e+02 Score=22.10 Aligned_cols=62 Identities=23% Similarity=0.149 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCcccccccccchhhhhHHHHHHHHHHHHH
Q 027066 127 VFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGDLSCATLRKGVFAAGAALTLLSLAGSILY 193 (229)
Q Consensus 127 i~~~v~SWi~F~IAe~~Ll~Ga~~N~~htk~~~~~~~~~~~C~~~r~GvFaagAvl~l~t~~~~i~y 193 (229)
.+.=.+-++.++++.+.+.......+-. ++ ++++......+-+...++++|++++.++.+..
T Consensus 80 ~~~~~v~~il~l~a~~~~a~~~~~~~~~--~~---~~~~~~~~~~~~~~~~Aa~~f~~~~~~l~~~s 141 (144)
T PF01284_consen 80 FIFDAVFAILWLAAFIALAAYLSDHSCS--NT---GNDYSYSGCSRCGAWKAAAAFGFLNWLLFIVS 141 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccc--cC---CCCcCCCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 4444455666666666665555442221 10 11222344556677889999999998887764
No 17
>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]
Probab=35.39 E-value=58 Score=32.81 Aligned_cols=65 Identities=25% Similarity=0.354 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCcccccccccchh-------------------hhhHH-----
Q 027066 127 VFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGDLSCATLRKGVFA-------------------AGAAL----- 182 (229)
Q Consensus 127 i~~~v~SWi~F~IAe~~Ll~Ga~~N~~htk~~~~~~~~~~~C~~~r~GvFa-------------------agAvl----- 182 (229)
++...+.|+. |+++-+.|+-.++.++.+ .+|++-|.+++. ++.+|
T Consensus 210 ll~i~ivW~~---~~iLT~tgay~~~~~~t~--------~~~RTD~~~vi~~apWi~vPyP~QwG~P~f~~~~~f~m~aa 278 (510)
T KOG1292|consen 210 LLAIAIVWLY---CFILTITGAYPYKPTTTQ--------SSCRTDRNGVISSAPWIRVPYPFQWGPPTFSAGLVFAMMAA 278 (510)
T ss_pred HHHHHHHHHH---HHHHHhccccCCCccccC--------CcccccHhhhhccCCceeecCCCccCCCcccHHHHHHHHHH
Confidence 5556677865 778888888777655543 266666666543 33343
Q ss_pred HHHHHHHHHHHHHHHhhcCC
Q 027066 183 TLLSLAGSILYYWAHTRADT 202 (229)
Q Consensus 183 ~l~t~~~~i~yYv~~~~a~~ 202 (229)
++++++-++..|....|-..
T Consensus 279 ~~va~iES~G~y~a~ar~~~ 298 (510)
T KOG1292|consen 279 SLVAMIESTGDYIACARLSS 298 (510)
T ss_pred HHHHHHHhcchHHHHHHHhc
Confidence 45666777777777666543
No 18
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=34.33 E-value=1.1e+02 Score=28.28 Aligned_cols=26 Identities=15% Similarity=0.098 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHhhhhcccccccc
Q 027066 133 SWVSFLGAEACLLAGSARNAYHTKYR 158 (229)
Q Consensus 133 SWi~F~IAe~~Ll~Ga~~N~~htk~~ 158 (229)
.|+.-++|.++++.|+...+++.++.
T Consensus 102 ~~~~G~~Al~liiiGv~lts~~~~~~ 127 (269)
T PF06800_consen 102 QKIIGFLALVLIIIGVILTSYQDKKS 127 (269)
T ss_pred hHHHHHHHHHHHHHHHHHhccccccc
Confidence 47888889999999999999888864
No 19
>COG4682 Predicted membrane protein [Function unknown]
Probab=33.43 E-value=1.1e+02 Score=25.55 Aligned_cols=47 Identities=28% Similarity=0.359 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCcccccccccchhhhhHHHHH
Q 027066 124 TWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGDLSCATLRKGVFAAGAALTLL 185 (229)
Q Consensus 124 ~~ai~~~v~SWi~F~IAe~~Ll~Ga~~N~~htk~~~~~~~~~~~C~~~r~GvFaagAvl~l~ 185 (229)
..+..+-++||..|+++++..+.|- +|+-++= -.||-|-+.=+++++
T Consensus 7 ~~s~af~~va~~~lv~G~vvyLiGL-Wna~~qL--------------nEKGYyfaVlvl~~F 53 (128)
T COG4682 7 IVSKAFTIVAWLALVVGAVVYLVGL-WNACMQL--------------NEKGYYFAVLVLGLF 53 (128)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhh-cccchhh--------------ccCceeehhHHHHhh
Confidence 4556677899999999999999996 5654332 256777665444443
No 20
>PRK11403 hypothetical protein; Provisional
Probab=28.39 E-value=1.2e+02 Score=24.77 Aligned_cols=46 Identities=17% Similarity=0.156 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCcccccccccchhhhhHHHHHHH
Q 027066 127 VFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGDLSCATLRKGVFAAGAALTLLSL 187 (229)
Q Consensus 127 i~~~v~SWi~F~IAe~~Ll~Ga~~N~~htk~~~~~~~~~~~C~~~r~GvFaagAvl~l~t~ 187 (229)
-++.-+||...+++..+|..|. .|+.-. .--||+++.+=+++++..
T Consensus 61 ~~y~~~cw~~~llsi~LL~vGl-~NA~l~--------------lsEKgfY~~af~lsLfg~ 106 (113)
T PRK11403 61 DFFIHICQLVALITIGLLFIGV-LNAPIN--------------AYEMVIYPIAFFVCLFGQ 106 (113)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-hccccc--------------HHHhhHHHHHHHHHHHHH
Confidence 4577789999999999999997 576432 236889988888888764
No 21
>PF13828 DUF4190: Domain of unknown function (DUF4190)
Probab=27.58 E-value=2.2e+02 Score=20.57 Aligned_cols=56 Identities=14% Similarity=0.132 Sum_probs=30.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 027066 85 STVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAE 141 (229)
Q Consensus 85 A~~lGv~A~v~Ll~aqvv~~~~~~C~Ccg~~~~~~~~~r~~ai~~~v~SWi~F~IAe 141 (229)
|+.+|+.+++++.+.- +.-++.|..--++-.......|-.|+.=.+++|+..+++.
T Consensus 5 slvlgi~~~~~~~~~~-i~aiilG~ial~~i~r~~~~G~g~A~aGivlG~i~~~~~v 60 (62)
T PF13828_consen 5 SLVLGILGLFLCGLLG-IVAIILGHIALRQIRRSGQRGRGMAIAGIVLGYIGIVLAV 60 (62)
T ss_pred HHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHH
Confidence 5566777766632222 2222233221122122224788899999999999877654
No 22
>PF14798 Ca_hom_mod: Calcium homeostasis modulator
Probab=26.17 E-value=1.2e+02 Score=27.65 Aligned_cols=63 Identities=21% Similarity=0.103 Sum_probs=47.0
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 027066 81 STDASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHT 155 (229)
Q Consensus 81 psd~A~~lGv~A~v~Ll~aqvv~~~~~~C~Ccg~~~~~~~~~r~~ai~~~v~SWi~F~IAe~~Ll~Ga~~N~~ht 155 (229)
.++.+.+.|+.+++-+.--|+.-+++=.|+|--+ .|-.-+..| .++-|.++|+.|-..|+.-.
T Consensus 13 ~~~~~~~ngi~~llt~g~e~lfs~~~F~CPC~~~------~N~~YGl~f------LlvPAl~LfllG~~ln~~~W 75 (251)
T PF14798_consen 13 SHSESLGNGICALLTAGGEQLFSSFVFSCPCSPG------WNFLYGLVF------LLVPALVLFLLGYLLNRRTW 75 (251)
T ss_pred hcchhHHHHHHHHHHHHHHhhhheeeeecCCCCc------ccchhHhHH------HHHHHHHHHHHHHHHhcccc
Confidence 4667889999999999999999999999998422 233333332 34578899999999998543
No 23
>PF00822 PMP22_Claudin: PMP-22/EMP/MP20/Claudin family; InterPro: IPR004031 Several vertebrate small integral membrane glycoproteins are evolutionary related [, , ], including eye lens specific membrane protein 20 (MP20 or MP19); epithelial membrane protein-1 (EMP-1), which is also known as tumor-associated membrane protein (TMP) or as squamous cell-specific protein Cl-20; epithelial membrane protein-2 (EMP-2), which is also known as XMP; epithelial membrane protein-3 (EMP-3), also known as YMP; and peripheral myelin protein 22 (PMP-22), which is expressed in many tissues but mainly by Schwann cells as a component of myelin of the peripheral nervous system (PNS). PMP-22 probably plays a role both in myelinization and in cell proliferation. Mutations affecting PMP-22 are associated with hereditary motor and sensory neuropathies such as Charcot-Marie-Tooth disease type 1A (CMT-1A) in human or the trembler phenotype in mice. The proteins of this family are about 160 to 173 amino acid residues in size, and contain four transmembrane segments. PMP-22, EMP-1, -2 and -3 are highly similar, while MP20 is more distantly related. This family also includes the claudins, which are components of tight junctions.; GO: 0016020 membrane
Probab=25.03 E-value=1.7e+02 Score=23.31 Aligned_cols=57 Identities=14% Similarity=0.058 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccc
Q 027066 87 VYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKY 157 (229)
Q Consensus 87 ~lGv~A~v~Ll~aqvv~~~~~~C~Ccg~~~~~~~~~r~~ai~~~v~SWi~F~IAe~~Ll~Ga~~N~~htk~ 157 (229)
++-+.+.++..++-++.... ..|.++...+. . +-+.+++|.++.+++.+.-..++..
T Consensus 75 ~l~i~s~il~~l~~~l~~~g--~~~~~~~~~~~----~--------ag~l~~~agl~~l~~~~~y~~~~~~ 131 (166)
T PF00822_consen 75 ALMILSIILGFLGLILALFG--LCCTKRGPRPK----V--------AGILFILAGLCLLIAVSWYTAVIVQ 131 (166)
T ss_pred HHhHHHHHHHHHHHHHHHhc--ccccccCCCCC----c--------ceeeeHHHhhhhheeEEEEeccCch
Confidence 55667777766665554433 22333222221 1 5667888999999999886655543
No 24
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=24.69 E-value=3.5e+02 Score=21.23 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 027066 125 WAVFFFIVSWVSFLGAEACLLAGSARN 151 (229)
Q Consensus 125 ~ai~~~v~SWi~F~IAe~~Ll~Ga~~N 151 (229)
.+.++++++.++.+++.+.+..--..|
T Consensus 103 ~~~~~~~~ag~~~l~~l~~~~~~~~~~ 129 (172)
T PF13903_consen 103 FAGILFILAGLCILIALIVFVVSVNYE 129 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366788899998888887777665544
No 25
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=22.97 E-value=1.1e+02 Score=28.09 Aligned_cols=45 Identities=22% Similarity=0.332 Sum_probs=30.2
Q ss_pred HHHHHHhccccccCCCCCCC-CchHHHHHHHHHHHHHHHHHHHHHH
Q 027066 101 AVVNGVTRCLCFGKGLVTGT-SSTTWAVFFFIVSWVSFLGAEACLL 145 (229)
Q Consensus 101 vv~~~~~~C~Ccg~~~~~~~-~~r~~ai~~~v~SWi~F~IAe~~Ll 145 (229)
-+-|...+|+-|+|-.+-+. -.|.-++.|||+.-+..+.|.++-+
T Consensus 184 t~tnaLArCPHCrKvSsvGsrfar~Ra~~ffilal~~avta~~lt~ 229 (275)
T KOG4684|consen 184 TLTNALARCPHCRKVSSVGSRFARRRALLFFILALTVAVTAVILTM 229 (275)
T ss_pred hHHHHHhcCCcccchhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 34567789999988654442 3456788888887776666655544
No 26
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=22.93 E-value=1.6e+02 Score=28.72 Aligned_cols=46 Identities=13% Similarity=0.033 Sum_probs=30.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCchHHHHHHHHH
Q 027066 86 TVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIV 132 (229)
Q Consensus 86 ~~lGv~A~v~Ll~aqvv~~~~~~C~Ccg~~~~~~~~~r~~ai~~~v~ 132 (229)
..++-.-=++|.+.+++..+++.+..|..|+-.+ ..|++..+++++
T Consensus 338 ~~l~k~inllL~l~~vlLv~vSt~~~~~~Pl~~t-R~r~~~t~~~v~ 383 (395)
T PF10267_consen 338 ALLGKLINLLLTLLTVLLVFVSTVANCPLPLTRT-RLRTLTTLLLVG 383 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHhhc-cHHHHHHHHHHH
Confidence 4455555567777788777777776777777665 667766655544
No 27
>KOG4016 consensus Synaptic vesicle protein Synaptogyrin involved in regulation of Ca2+-dependent exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.29 E-value=6.4e+02 Score=23.07 Aligned_cols=111 Identities=15% Similarity=0.208 Sum_probs=51.1
Q ss_pred CcceeecCCChhh-hhHHHHHHHHHHHHHHHHHHhccccccCCCCCCCC--chH-HHHHHHHHHHHH-HHHHHHHHHHhh
Q 027066 74 EMTYCVYSTDAST-VYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTS--STT-WAVFFFIVSWVS-FLGAEACLLAGS 148 (229)
Q Consensus 74 ~~~~C~Ypsd~A~-~lGv~A~v~Ll~aqvv~~~~~~C~Ccg~~~~~~~~--~r~-~ai~~~v~SWi~-F~IAe~~Ll~Ga 148 (229)
...+|.|++|+.. .+|++.-+|-.++-+.-.+.--. -+...+.+ +|. ++=+.+-.-|.. +.|++ |+|+-
T Consensus 55 ~~~~Ciynrn~~ACsyg~avG~~Afla~~~flvlD~~----f~qISsv~~RkraVl~Dl~~SalwtflwfvGF-c~l~n- 128 (233)
T KOG4016|consen 55 GEEFCIYNRNSNACSYGVAVGVLAFLACLAFLVLDVY----FPQISSVKDRKRAVLADLGVSALWAFLWFVGF-CFLAN- 128 (233)
T ss_pred CceEEEECCCCcchhHHHHHHHHHHHHHHHHHHHHhh----hhhhcccchhHHHHHHHHHHHHHHHHHHHHHH-HHHHH-
Confidence 3568999999543 45554444444444433333221 12222223 332 443333334543 33344 44443
Q ss_pred hhcccccccccccCCCCcccccccccchhhhhHHHHHHHHHHHHH-HHHHhhcC
Q 027066 149 ARNAYHTKYRKIFGGGDLSCATLRKGVFAAGAALTLLSLAGSILY-YWAHTRAD 201 (229)
Q Consensus 149 ~~N~~htk~~~~~~~~~~~C~~~r~GvFaagAvl~l~t~~~~i~y-Yv~~~~a~ 201 (229)
+-+.. +|.=-.++.|==-+|=.|+|++.+.|... |+..+|=+
T Consensus 129 ---qwqvs--------~p~~~~~~a~saraaIafsffSilsW~~~A~lA~qR~~ 171 (233)
T KOG4016|consen 129 ---QWQVS--------KPKENPLGAGSARAAIAFSFFSILSWGGQAVLAFQRYR 171 (233)
T ss_pred ---Hhhcc--------CCCCCCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21111 11112445553334556788888887765 34444434
No 28
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=21.14 E-value=2.3e+02 Score=26.63 Aligned_cols=25 Identities=28% Similarity=0.158 Sum_probs=17.5
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHH
Q 027066 171 LRKGVFAAGAALTLLSLAGSILYYW 195 (229)
Q Consensus 171 ~r~GvFaagAvl~l~t~~~~i~yYv 195 (229)
++++.|+.-++.-++-..+++-||=
T Consensus 72 ~v~~~~G~~~v~liLgl~ig~p~~k 96 (279)
T PF07271_consen 72 VVGGSAGLLAVALILGLAIGIPIYK 96 (279)
T ss_pred eccchhhHHHHHHHHHHhhcchhhh
Confidence 3667777777777777777776663
Done!