Query 027066
Match_columns 229
No_of_seqs 111 out of 216
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 06:52:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027066.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027066hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2z73_A Rhodopsin; visual pigme 12.9 6.3E+02 0.021 21.5 9.3 42 101-142 126-168 (448)
2 3b23_C Variegin; hydrolase-hyd 12.2 65 0.0022 19.9 0.7 11 218-228 12-22 (32)
3 3eml_A Human adenosine A2A rec 8.7 8.7E+02 0.03 20.4 8.7 47 101-147 110-157 (488)
4 3arc_M Photosystem II reaction 6.5 4.4E+02 0.015 16.6 2.9 25 173-197 5-29 (36)
5 2jp3_A FXYD domain-containing 6.4 3.3E+02 0.011 19.4 2.5 38 74-113 8-45 (67)
6 4ea3_A Fusion protein of nocic 6.3 1.2E+03 0.04 19.8 8.6 39 102-140 216-255 (434)
7 3eml_A Human adenosine A2A rec 5.7 1.2E+03 0.042 19.5 6.7 58 125-200 399-456 (488)
8 3uon_A Human M2 muscarinic ace 5.4 1.3E+03 0.044 19.3 12.2 47 101-147 114-161 (467)
9 2lk9_A Bone marrow stromal ant 5.3 3.8E+02 0.013 16.8 2.0 24 4-27 10-33 (35)
10 3vw7_A Proteinase-activated re 5.1 1.4E+03 0.047 19.3 11.4 47 101-147 111-158 (484)
No 1
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=12.92 E-value=6.3e+02 Score=21.51 Aligned_cols=42 Identities=14% Similarity=0.211 Sum_probs=22.8
Q ss_pred HHHHHHhccccccCCCCCC-CCchHHHHHHHHHHHHHHHHHHH
Q 027066 101 AVVNGVTRCLCFGKGLVTG-TSSTTWAVFFFIVSWVSFLGAEA 142 (229)
Q Consensus 101 vv~~~~~~C~Ccg~~~~~~-~~~r~~ai~~~v~SWi~F~IAe~ 142 (229)
+++..+-+|..-.++.... -.++..+....++.|+..++-.+
T Consensus 126 l~~isidRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~~~~~ 168 (448)
T 2z73_A 126 MAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAI 168 (448)
T ss_dssp HHHHHHHHHHHTTSCTTTCCCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccccccccceechhHHHHHHHHHHHHHHHHHH
Confidence 4455566775444443321 13444566677788987654433
No 2
>3b23_C Variegin; hydrolase-hydrolase inhibitor complex; 2.40A {Amblyomma variegatum}
Probab=12.18 E-value=65 Score=19.94 Aligned_cols=11 Identities=36% Similarity=0.616 Sum_probs=8.9
Q ss_pred ccCCCCCCCcc
Q 027066 218 QQQQPGNDFEK 228 (229)
Q Consensus 218 ~~~~~~~~~~~ 228 (229)
+..-+|+|||.
T Consensus 12 ~~~~p~gDFE~ 22 (32)
T 3b23_C 12 HKTAPPFDFEA 22 (32)
T ss_pred cccCCCCChhh
Confidence 56778999985
No 3
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=8.68 E-value=8.7e+02 Score=20.45 Aligned_cols=47 Identities=15% Similarity=0.162 Sum_probs=25.5
Q ss_pred HHHHHHhccccccCCCCCC-CCchHHHHHHHHHHHHHHHHHHHHHHHh
Q 027066 101 AVVNGVTRCLCFGKGLVTG-TSSTTWAVFFFIVSWVSFLGAEACLLAG 147 (229)
Q Consensus 101 vv~~~~~~C~Ccg~~~~~~-~~~r~~ai~~~v~SWi~F~IAe~~Ll~G 147 (229)
++++..-+|....+|.... -.++..+....++.|+..++-.+..+.+
T Consensus 110 l~~is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~~~~~~~~~~ 157 (488)
T 3eml_A 110 LLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLG 157 (488)
T ss_dssp HHHHHHHHHHHHSCGGGSTTTSCHHHHHHHHHHHHHHHHHHHTTGGGT
T ss_pred HHHHHHHhheeEecccccccccCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455556664444444322 1344456666778898776555444444
No 4
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=6.46 E-value=4.4e+02 Score=16.56 Aligned_cols=25 Identities=20% Similarity=0.107 Sum_probs=20.8
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHH
Q 027066 173 KGVFAAGAALTLLSLAGSILYYWAH 197 (229)
Q Consensus 173 ~GvFaagAvl~l~t~~~~i~yYv~~ 197 (229)
..=|.+-+.|.++-++|-+..|+--
T Consensus 5 ~l~fiAt~Lfi~iPt~FLlilYvqT 29 (36)
T 3arc_M 5 QLGLIATALFVLVPSVFLIILYVQT 29 (36)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhee
Confidence 3457888999999999999999853
No 5
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=6.44 E-value=3.3e+02 Score=19.39 Aligned_cols=38 Identities=8% Similarity=0.057 Sum_probs=19.7
Q ss_pred CcceeecCCChhhhhHHHHHHHHHHHHHHHHHHhcccccc
Q 027066 74 EMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFG 113 (229)
Q Consensus 74 ~~~~C~Ypsd~A~~lGv~A~v~Ll~aqvv~~~~~~C~Ccg 113 (229)
+..+.-|.+=.--||=+++.+|+ .-+++....+|-|+.
T Consensus 8 dpF~YDY~tLRigGLifA~vLfi--~GI~iilS~kcrCk~ 45 (67)
T 2jp3_A 8 SPFYYDWESLQLGGLIFGGLLCI--AGIALALSGKCKCRR 45 (67)
T ss_dssp SGGGGGGHHHHHHHHHHHHHHHH--HHHHHHHTTHHHHHH
T ss_pred CCcccchHHheecchhhHHHHHH--HHHHHHHcCcccccC
Confidence 34445554444444444444433 344455567798885
No 6
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR network, structural genomics, GPCR membrane 7TM NOP ORL1 cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo sapiens}
Probab=6.35 E-value=1.2e+03 Score=19.82 Aligned_cols=39 Identities=10% Similarity=0.050 Sum_probs=17.4
Q ss_pred HHHHHhccccccCCCCCC-CCchHHHHHHHHHHHHHHHHH
Q 027066 102 VVNGVTRCLCFGKGLVTG-TSSTTWAVFFFIVSWVSFLGA 140 (229)
Q Consensus 102 v~~~~~~C~Ccg~~~~~~-~~~r~~ai~~~v~SWi~F~IA 140 (229)
+++..-+|..--+|.... -.++..+....+..|+..++-
T Consensus 216 ~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~W~~s~~~ 255 (434)
T 4ea3_A 216 TAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIWALASVV 255 (434)
T ss_dssp HHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhEEEcccccccccchhhhHHhhhhhhhHHHHH
Confidence 344455664333443322 123344555567778765543
No 7
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=5.72 E-value=1.2e+03 Score=19.48 Aligned_cols=58 Identities=12% Similarity=0.118 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCcccccccccchhhhhHHHHHHHHHHHHHHHHHhhc
Q 027066 125 WAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGDLSCATLRKGVFAAGAALTLLSLAGSILYYWAHTRA 200 (229)
Q Consensus 125 ~ai~~~v~SWi~F~IAe~~Ll~Ga~~N~~htk~~~~~~~~~~~C~~~r~GvFaagAvl~l~t~~~~i~yYv~~~~a 200 (229)
.-++.|+++|+=+.|...+.... ++|.....-++-..-.|.++...++-+.|....+.
T Consensus 399 ~iv~~F~icw~P~~i~~~~~~~~------------------~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~ 456 (488)
T 3eml_A 399 IIVGLFALCWLPLHIINCFTFFC------------------PDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIRE 456 (488)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC------------------TTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHhhhHHHHHHHHhcc------------------CccccccHHHHHHHHHHHHHHhhhchhhhhhcCHH
Confidence 34677888888877655443332 02333334455677788999999998888776543
No 8
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Probab=5.35 E-value=1.3e+03 Score=19.27 Aligned_cols=47 Identities=19% Similarity=0.187 Sum_probs=25.9
Q ss_pred HHHHHHhccccccCCCCCC-CCchHHHHHHHHHHHHHHHHHHHHHHHh
Q 027066 101 AVVNGVTRCLCFGKGLVTG-TSSTTWAVFFFIVSWVSFLGAEACLLAG 147 (229)
Q Consensus 101 vv~~~~~~C~Ccg~~~~~~-~~~r~~ai~~~v~SWi~F~IAe~~Ll~G 147 (229)
++++.+-+|...-+|.... -.++..+....++.|+..++..+..+.+
T Consensus 114 l~~isidRy~ai~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~ 161 (467)
T 3uon_A 114 LLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFILWAPAILF 161 (467)
T ss_dssp HHHHHHHHHHHHHCTTTSGGGCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556664333444322 1244456667788898877655554444
No 9
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=5.34 E-value=3.8e+02 Score=16.76 Aligned_cols=24 Identities=8% Similarity=0.394 Sum_probs=11.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhh
Q 027066 4 SVSIVAVVTALHLIAFVFAVGAER 27 (229)
Q Consensus 4 s~~v~~vV~~LgliAfiLgi~AE~ 27 (229)
++++.++++.||+.=-++.+-|..
T Consensus 10 Gvl~LLviV~LgV~LI~f~~kAns 33 (35)
T 2lk9_A 10 GILVLLIIVILGVPLIIFTIKKKK 33 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHC-----
T ss_pred cHHHHHHHHHhcchheEEeeeccc
Confidence 345555556677666666555543
No 10
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=5.08 E-value=1.4e+03 Score=19.26 Aligned_cols=47 Identities=17% Similarity=0.131 Sum_probs=25.1
Q ss_pred HHHHHHhccccccCCCCCC-CCchHHHHHHHHHHHHHHHHHHHHHHHh
Q 027066 101 AVVNGVTRCLCFGKGLVTG-TSSTTWAVFFFIVSWVSFLGAEACLLAG 147 (229)
Q Consensus 101 vv~~~~~~C~Ccg~~~~~~-~~~r~~ai~~~v~SWi~F~IAe~~Ll~G 147 (229)
++++.+-+|...-+|.... -.++..+....++.|+..++..+..+.+
T Consensus 111 l~~is~dRy~aI~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~ 158 (484)
T 3vw7_A 111 MTVISIDRFLAVVYPMQSLSWRTLGRASFTCLAIWALAIAGVVPLLLK 158 (484)
T ss_dssp HHHHHHHHHHHHHCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHheEEEcccccccccchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455556664433444332 1344456667788999877655555444
Done!