Query 027066
Match_columns 229
No_of_seqs 111 out of 216
Neff 4.6
Searched_HMMs 13730
Date Mon Mar 25 06:52:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027066.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027066hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2p7tc1 f.14.1.1 (C:86-119) Po 25.6 33 0.0024 19.7 3.1 22 7-28 6-27 (34)
2 d2pila_ d.24.1.1 (A:) Pilin Gc 8.2 97 0.0071 20.6 2.4 17 7-23 6-22 (158)
3 d1m0ga_ g.46.1.1 (A:) Metallot 5.6 1.3E+02 0.0095 16.5 1.5 13 106-118 14-26 (30)
4 d1p8ba_ g.3.6.4 (A:) Pab1, sub 5.5 66 0.0048 18.9 0.1 8 75-82 29-36 (37)
5 d1xmec1 f.23.9.1 (C:2-34) Bact 5.0 2.8E+02 0.02 15.5 2.7 26 173-198 5-30 (33)
6 d2axtm1 f.23.35.1 (M:1-36) Pho 4.8 3.3E+02 0.024 15.6 3.7 21 176-196 8-28 (36)
7 d1ju8a_ g.3.6.4 (A:) Leginsuli 4.4 86 0.0063 18.4 0.1 8 75-82 29-36 (37)
8 d1ebda1 c.3.1.5 (A:7-154,A:272 4.2 1.1E+02 0.0081 21.6 0.6 17 165-181 176-192 (223)
9 d1ojta1 c.3.1.5 (A:117-275,A:4 3.9 1.2E+02 0.0088 22.0 0.6 18 164-181 183-200 (229)
10 d1jb0m_ f.23.19.1 (M:) Subunit 3.7 3.8E+02 0.028 14.7 3.0 11 12-22 16-26 (31)
No 1
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=25.64 E-value=33 Score=19.70 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhh
Q 027066 7 IVAVVTALHLIAFVFAVGAERR 28 (229)
Q Consensus 7 v~~vV~~LgliAfiLgi~AE~~ 28 (229)
+.++|.+-|+.+|.|-++|-.+
T Consensus 6 vavvvmvagits~glv~aa~at 27 (34)
T d2p7tc1 6 VAVVVMVAGITSFGLVTAALAT 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEeccchhhhHHHHHHH
Confidence 4567889999999999888653
No 2
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=8.23 E-value=97 Score=20.58 Aligned_cols=17 Identities=18% Similarity=0.278 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHH
Q 027066 7 IVAVVTALHLIAFVFAV 23 (229)
Q Consensus 7 v~~vV~~LgliAfiLgi 23 (229)
+.+++.++|++|.+.--
T Consensus 6 LlVViaIIgILaaia~P 22 (158)
T d2pila_ 6 LMIVIAIVGILAAVALP 22 (158)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666777877776543
No 3
>d1m0ga_ g.46.1.1 (A:) Metallothionein {Black rockcod (Notothenia coriiceps) [TaxId: 8208]}
Probab=5.62 E-value=1.3e+02 Score=16.52 Aligned_cols=13 Identities=38% Similarity=0.741 Sum_probs=8.3
Q ss_pred HhccccccCCCCC
Q 027066 106 VTRCLCFGKGLVT 118 (229)
Q Consensus 106 ~~~C~Ccg~~~~~ 118 (229)
++||.|.|+.-..
T Consensus 14 asgcvckgktcdt 26 (30)
T d1m0ga_ 14 ASGCVCKGKTCDT 26 (30)
T ss_dssp HTSCGGGTSSSST
T ss_pred ccCceecCCcccc
Confidence 5677777765443
No 4
>d1p8ba_ g.3.6.4 (A:) Pab1, subunit b {Garden pea (Pisum sativum) [TaxId: 3888]}
Probab=5.48 E-value=66 Score=18.94 Aligned_cols=8 Identities=25% Similarity=0.800 Sum_probs=6.3
Q ss_pred cceeecCC
Q 027066 75 MTYCVYST 82 (229)
Q Consensus 75 ~~~C~Yps 82 (229)
..+|+||+
T Consensus 29 ~G~c~~Ps 36 (37)
T d1p8ba_ 29 IGYCRNPS 36 (37)
T ss_dssp CEEEECTT
T ss_pred EEEEecCC
Confidence 46899986
No 5
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=5.00 E-value=2.8e+02 Score=15.46 Aligned_cols=26 Identities=31% Similarity=0.144 Sum_probs=20.5
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHh
Q 027066 173 KGVFAAGAALTLLSLAGSILYYWAHT 198 (229)
Q Consensus 173 ~GvFaagAvl~l~t~~~~i~yYv~~~ 198 (229)
+|-.+.-++|+|.-.+||...|-.+.
T Consensus 5 ~gal~vi~il~l~ilvfw~gv~avf~ 30 (33)
T d1xmec1 5 KGALAVILVLTLTILVFWLGVYAVFF 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56677778899999999998886653
No 6
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.78 E-value=3.3e+02 Score=15.57 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=18.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHH
Q 027066 176 FAAGAALTLLSLAGSILYYWA 196 (229)
Q Consensus 176 FaagAvl~l~t~~~~i~yYv~ 196 (229)
|.+.+.|.++-++|-++.|+=
T Consensus 8 ~iAt~LFilvPt~FLliLyvq 28 (36)
T d2axtm1 8 LIATALFVLVPSVFLIILYVQ 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhee
Confidence 677888999999999999984
No 7
>d1ju8a_ g.3.6.4 (A:) Leginsulin {Soybean (Glycine max) [TaxId: 3847]}
Probab=4.35 E-value=86 Score=18.37 Aligned_cols=8 Identities=25% Similarity=0.870 Sum_probs=6.3
Q ss_pred cceeecCC
Q 027066 75 MTYCVYST 82 (229)
Q Consensus 75 ~~~C~Yps 82 (229)
..+|.||+
T Consensus 29 vG~C~~Ps 36 (37)
T d1ju8a_ 29 VGFCIHPT 36 (37)
T ss_dssp CEEEECCC
T ss_pred EEEeecCC
Confidence 45899986
No 8
>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=4.18 E-value=1.1e+02 Score=21.59 Aligned_cols=17 Identities=35% Similarity=0.581 Sum_probs=14.7
Q ss_pred CcccccccccchhhhhH
Q 027066 165 DLSCATLRKGVFAAGAA 181 (229)
Q Consensus 165 ~~~C~~~r~GvFaagAv 181 (229)
|..+.|-.+||||+|=+
T Consensus 176 d~~~~T~~~gvyA~GDv 192 (223)
T d1ebda1 176 DQQCRTSVPNIFAIGDI 192 (223)
T ss_dssp CTTCBCSSTTEEECGGG
T ss_pred CCCCCCCCCCEEEEecc
Confidence 45799999999999976
No 9
>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}
Probab=3.88 E-value=1.2e+02 Score=21.98 Aligned_cols=18 Identities=22% Similarity=0.165 Sum_probs=14.5
Q ss_pred CCcccccccccchhhhhH
Q 027066 164 GDLSCATLRKGVFAAGAA 181 (229)
Q Consensus 164 ~~~~C~~~r~GvFaagAv 181 (229)
.|..|.|-.+||||+|=+
T Consensus 183 vd~~~~TsvpgVyAaGDv 200 (229)
T d1ojta1 183 VDKQMRTNVPHIYAIGDI 200 (229)
T ss_dssp CCTTSBCSSTTEEECGGG
T ss_pred cCCCccCCCCCEEEEEec
Confidence 355799999999999843
No 10
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=3.71 E-value=3.8e+02 Score=14.71 Aligned_cols=11 Identities=18% Similarity=0.289 Sum_probs=6.1
Q ss_pred HHHHHHHHHHH
Q 027066 12 TALHLIAFVFA 22 (229)
Q Consensus 12 ~~LgliAfiLg 22 (229)
++-|++||=|+
T Consensus 16 l~pg~lafrla 26 (31)
T d1jb0m_ 16 LLPAVLAFRLS 26 (31)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44466666553
Done!