BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027067
(229 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 90/179 (50%), Gaps = 16/179 (8%)
Query: 23 QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQ 82
+ +L + ++I G + G NG GK+T L+ ++ + KP GEI++NG IT +
Sbjct: 22 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT------K 75
Query: 83 YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGN------SLPALELMGLGRLAKEKA 136
K ++ +L + V K +V D ++ L G + N +L ++E++ L K+K
Sbjct: 76 VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL----KKKL 131
Query: 137 RMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVAT 195
LS G ++ I++LD+P VA+D D + I E K+ GIVI+++
Sbjct: 132 GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISS 190
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 91/188 (48%), Gaps = 13/188 (6%)
Query: 23 QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQ 82
++IL+ ++ I +G L G NG+GK+T LR+++ KPS+G + G ++ + H+
Sbjct: 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEP--HE 85
Query: 83 YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLP--------ALELMGLGRLAKE 134
+ +++L + + + +++ + G +S A E+ GLG K+
Sbjct: 86 VRKLISYLPEEAGA---YRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKD 142
Query: 135 KARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVA 194
+ S G ++ + +LDEP+ LD R + I+ + ++G ++V+
Sbjct: 143 RVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVS 202
Query: 195 THLPIQIE 202
+H +++E
Sbjct: 203 SHNMLEVE 210
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 82/181 (45%), Gaps = 11/181 (6%)
Query: 25 ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI-TQSGIFHQY 83
+L +++S+ G L + G +G GK+T LR LAGF +P +GEI +G I +++
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVR 78
Query: 84 KLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSL-------PALELMGLGRLAKEKA 136
+ +L +L + + TV N+ + L +G + LEL G+ LA
Sbjct: 79 ERRLGYLVQEGVLFPHLTVYRNIAYG--LGNGKGRTAQERQRIEAMLELTGISELAGRYP 136
Query: 137 RMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLL-EYIIAEHRKKGGIVIVAT 195
LS G D + LLDEP ALD R + E +IA R G + +
Sbjct: 137 HELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVS 196
Query: 196 H 196
H
Sbjct: 197 H 197
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 60.5 bits (145), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 86/190 (45%), Gaps = 30/190 (15%)
Query: 26 LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGH--DITQSGIFHQY 83
L+ +N++I G + G NG GKST + G KPS+G IL++ D ++ GI
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGI---- 79
Query: 84 KLQLNWLSLKDAVKEKFTVLDNVQWF------EVLEGKQGNSLP----------ALELMG 127
+ L++++ F DN Q F +V G LP AL+ G
Sbjct: 80 ------MKLRESIGIVFQDPDN-QLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTG 132
Query: 128 LGRLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK 187
+ L + LS G ++ + +LDEP+ LD GV + ++ E +K+
Sbjct: 133 IEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKE 192
Query: 188 GGI-VIVATH 196
GI +I+ATH
Sbjct: 193 LGITIIIATH 202
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 85/194 (43%), Gaps = 22/194 (11%)
Query: 26 LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL 85
L HV+ SI G + L G +GSGKST + F +G I +GHD+ YKL
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDV------RDYKL 412
Query: 86 Q--LNWLSLKDAVKEKF--TVLDNVQWF-------EVLE--GKQGNSLPALELM--GLGR 130
+L F T+ +N+ + E +E +Q +++ +E M GL
Sbjct: 413 TNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDT 472
Query: 131 LAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGI 190
+ E LS G D P+ +LDE + ALD + R ++ + E +K +
Sbjct: 473 VIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTV 532
Query: 191 VIVATHLPIQIEDA 204
+++A L IE A
Sbjct: 533 LVIAHRLST-IEQA 545
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 96/197 (48%), Gaps = 26/197 (13%)
Query: 23 QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN-----GHDITQS 77
++ L +V++ I++G L++ G GSGKST L+++AG +P++G++L++ G++I ++
Sbjct: 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRN 79
Query: 78 -GIFHQYK-----LQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRL 131
GI QY + + + AVK + D V + A+E +GL
Sbjct: 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVK----------KAMEFVGLDFD 129
Query: 132 A-KEKARMLSMGXXXXXXXXXXXXIDRP-IWLLDEPSVALDYDGVRLLEYIIAEHRKKGG 189
+ K++ G + P I +LDEP V LD +G L I+ + + G
Sbjct: 130 SFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGK 189
Query: 190 IVIVATHLPIQIEDAMN 206
VI+ +H IE +N
Sbjct: 190 TVILISH---DIETVIN 203
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 86/182 (47%), Gaps = 11/182 (6%)
Query: 24 QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI-FHQ 82
++L+ +N+ I +G +V+ G +GSGKSTFLR L GEI+ +G ++ ++
Sbjct: 17 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNK 76
Query: 83 YKLQLNWLSLKDAVKEKFTVLDNV--------QWFEVLEGKQGNSLPALELMGLGRLAKE 134
+ ++ + + + TVL+N+ +W E + ++ L+ +GL A
Sbjct: 77 VREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPR--EKAEAKAMELLDKVGLKDKAHA 134
Query: 135 KARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVA 194
LS G ++ I L DEP+ ALD + V + ++ + +G ++V
Sbjct: 135 YPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVV 194
Query: 195 TH 196
TH
Sbjct: 195 TH 196
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 96/197 (48%), Gaps = 26/197 (13%)
Query: 23 QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN-----GHDITQS 77
++ L +V++ I++G L++ G GSGKST L+++AG +P++G++L++ G++I ++
Sbjct: 22 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRN 81
Query: 78 -GIFHQYK-----LQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRL 131
GI QY + + + AVK + D V + A+E +GL
Sbjct: 82 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVK----------KAMEFVGLDFD 131
Query: 132 A-KEKARMLSMGXXXXXXXXXXXXIDRP-IWLLDEPSVALDYDGVRLLEYIIAEHRKKGG 189
+ K++ G + P I +LDEP V LD +G L I+ + + G
Sbjct: 132 SFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGK 191
Query: 190 IVIVATHLPIQIEDAMN 206
VI+ +H IE +N
Sbjct: 192 TVILISH---DIETVIN 205
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 81/188 (43%), Gaps = 10/188 (5%)
Query: 26 LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI---TQSGIFHQ 82
LR++N+ I G + L G +GSGKST ++ F GEIL +GHD+ T + + +Q
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQ 418
Query: 83 YKL-QLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELM-----GLGRLAKEKA 136
L N D V Q+ + A++ + GL + E
Sbjct: 419 VALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENG 478
Query: 137 RMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATH 196
+LS G D PI +LDE + ALD + R ++ + E +K +++A
Sbjct: 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHR 538
Query: 197 LPIQIEDA 204
L IE A
Sbjct: 539 LS-TIEKA 545
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 86/182 (47%), Gaps = 11/182 (6%)
Query: 24 QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI-FHQ 82
++L+ +N+ I +G +V+ G +GSGKSTFLR L GEI+ +G ++ ++
Sbjct: 38 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNK 97
Query: 83 YKLQLNWLSLKDAVKEKFTVLDNV--------QWFEVLEGKQGNSLPALELMGLGRLAKE 134
+ ++ + + + TVL+N+ +W E + ++ L+ +GL A
Sbjct: 98 VREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPR--EKAEAKAMELLDKVGLKDKAHA 155
Query: 135 KARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVA 194
LS G ++ I L DEP+ ALD + V + ++ + +G ++V
Sbjct: 156 YPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVV 215
Query: 195 TH 196
TH
Sbjct: 216 TH 217
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 88/184 (47%), Gaps = 13/184 (7%)
Query: 26 LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNG---HDITQSGIFHQ 82
L++VN++I +G + + G +GSGKST L ++ KP+ GE+ + +D+ +
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 83 YKLQLNWLSLKDAVKEKFTVLDNVQWFEVL--------EGKQGNSLPALELMGL-GRLAK 133
+ ++ ++ + + T L+NV+ + E ++ +L L++ L R A
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFAN 140
Query: 134 EKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYD-GVRLLEYIIAEHRKKGGIVI 192
K LS G + PI L D+P+ ALD G ++++ + + + G V+
Sbjct: 141 HKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVV 200
Query: 193 VATH 196
V TH
Sbjct: 201 VVTH 204
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 88/184 (47%), Gaps = 13/184 (7%)
Query: 26 LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNG---HDITQSGIFHQ 82
L++VN++I +G + + G +GSGKST L ++ KP+ GE+ + +D+ +
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 83 YKLQLNWLSLKDAVKEKFTVLDNVQWFEVL--------EGKQGNSLPALELMGL-GRLAK 133
+ ++ ++ + + T L+NV+ + E ++ +L L++ L R A
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFAN 140
Query: 134 EKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYD-GVRLLEYIIAEHRKKGGIVI 192
K LS G + PI L D+P+ ALD G ++++ + + + G V+
Sbjct: 141 HKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVV 200
Query: 193 VATH 196
V TH
Sbjct: 201 VVTH 204
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 79/180 (43%), Gaps = 9/180 (5%)
Query: 26 LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDIT--QSGIFHQY 83
+R +++ + DG ++L G +G GK+T LRM+AG +PS G+I + + GIF
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78
Query: 84 KLQLNWLSLKD-AVKEKFTVLDNVQWFEVLEGKQGNSL-----PALELMGLGRLAKEKAR 137
K + + + A+ TV DN+ + L + EL+GL L K R
Sbjct: 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPR 138
Query: 138 MLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYD-GVRLLEYIIAEHRKKGGIVIVATH 196
LS G ++L+DEP LD VR+ + R+ G I TH
Sbjct: 139 ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTH 198
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 13/184 (7%)
Query: 26 LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNG---HDITQSGIFHQ 82
L++VN++I +G + + G +GSGKST L ++ KP+ GE+ + +D+ +
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 83 YKLQLNWLSLKDAVKEKFTVLDNVQWFEVL--------EGKQGNSLPALELMGL-GRLAK 133
+ ++ ++ + + T L+NV+ + E ++ +L L+ L R A
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAELEERFAN 140
Query: 134 EKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYD-GVRLLEYIIAEHRKKGGIVI 192
K LS G + PI L DEP+ ALD G ++ + + + + G V+
Sbjct: 141 HKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVV 200
Query: 193 VATH 196
V TH
Sbjct: 201 VVTH 204
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 84/194 (43%), Gaps = 22/194 (11%)
Query: 26 LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL 85
LR++N+ I G + L G +GSGKST ++ F G IL +GHD+ +Y L
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDL------REYTL 412
Query: 86 Q--LNWLSLKDAVKEKF--TVLDNVQWFEVLE---------GKQGNSLPALELM--GLGR 130
N ++L F TV +N+ + E + ++ + M GL
Sbjct: 413 ASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDT 472
Query: 131 LAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGI 190
+ E +LS G D PI +LDE + ALD + R ++ + E +K
Sbjct: 473 IIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTS 532
Query: 191 VIVATHLPIQIEDA 204
+++A L IE A
Sbjct: 533 LVIAHRLS-TIEQA 545
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 67/155 (43%), Gaps = 24/155 (15%)
Query: 29 VNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQ--------SGIF 80
+N++I DG LVL G +G GK+T LRM+AG +P+ G I + D+T S +F
Sbjct: 31 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF 90
Query: 81 HQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLP-----ALELMGLGRLAKEK 135
Y AV TV +N+ + ++ + + A EL+ + L
Sbjct: 91 QSY-----------AVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRY 139
Query: 136 ARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALD 170
LS G ++ + L+DEP LD
Sbjct: 140 PAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 174
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 67/155 (43%), Gaps = 24/155 (15%)
Query: 29 VNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQ--------SGIF 80
+N++I DG LVL G +G GK+T LRM+AG +P+ G I + D+T S +F
Sbjct: 30 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF 89
Query: 81 HQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLP-----ALELMGLGRLAKEK 135
Y AV TV +N+ + ++ + + A EL+ + L
Sbjct: 90 QSY-----------AVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRY 138
Query: 136 ARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALD 170
LS G ++ + L+DEP LD
Sbjct: 139 PAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 173
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 35/51 (68%)
Query: 26 LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQ 76
L ++N+ I DG + L G +GSGKST L +AG KP++G+I ++ D+T+
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTE 69
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 79/191 (41%), Gaps = 17/191 (8%)
Query: 15 NVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI 74
+VS N +L+ VN G V+ G NGSGK+T L++LAG +AGEI +G
Sbjct: 16 SVSFRYNGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLL-AAAGEIFLDGSPA 74
Query: 75 -------TQSGIFHQYKLQLNWLSLKDAVKEKFTV--LDNVQWFEVLEGKQGNSLPALEL 125
+F Q+ ++++ V + LD + + ++ LEL
Sbjct: 75 DPFLLRKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIK-------KVLEL 127
Query: 126 MGLGRLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHR 185
+GL LA LS G D LDEP LD R + ++ +
Sbjct: 128 VGLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLK 187
Query: 186 KKGGIVIVATH 196
+G +I+ TH
Sbjct: 188 NEGKGIILVTH 198
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 85/199 (42%), Gaps = 31/199 (15%)
Query: 25 ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK 84
IL ++N+SI G + + G +GSGKST +++ F P G++L +GHD+ +
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALA------- 70
Query: 85 LQLNWLS------LKDAVKEKFTVLDNVQWFE--------VLEGKQGNSLPALELM--GL 128
NWL L+D V +++DN+ + K + + + G
Sbjct: 71 -DPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGY 129
Query: 129 GRLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK-- 186
+ E+ LS G + I + DE + ALDY+ E++I +
Sbjct: 130 NTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYES----EHVIMRNMHKI 185
Query: 187 -KGGIVIVATHLPIQIEDA 204
KG VI+ H +++A
Sbjct: 186 CKGRTVIIIAHRLSTVKNA 204
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 85/199 (42%), Gaps = 31/199 (15%)
Query: 25 ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK 84
IL ++N+SI G + + G +GSGKST +++ F P G++L +GHD+ +
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALA------- 76
Query: 85 LQLNWLS------LKDAVKEKFTVLDNVQWFE--------VLEGKQGNSLPALELM--GL 128
NWL L+D V +++DN+ + K + + + G
Sbjct: 77 -DPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGY 135
Query: 129 GRLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK-- 186
+ E+ LS G + I + DE + ALDY+ E++I +
Sbjct: 136 NTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYES----EHVIMRNMHKI 191
Query: 187 -KGGIVIVATHLPIQIEDA 204
KG VI+ H +++A
Sbjct: 192 CKGRTVIIIAHRLSTVKNA 210
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 79/186 (42%), Gaps = 25/186 (13%)
Query: 25 ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEIL-----WNGHDITQSG- 78
+ + +N+ IH+G +V G +G GKST LRM+AG ++G++ N + G
Sbjct: 18 VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGV 77
Query: 79 --IFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSL-----PALELMGLGRL 131
+F Y A+ +V +N+ + L G + + E++ L L
Sbjct: 78 GMVFQSY-----------ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHL 126
Query: 132 AKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYD-GVRLLEYIIAEHRKKGGI 190
K + LS G + ++LLDEP LD V++ I H++ G
Sbjct: 127 LDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRT 186
Query: 191 VIVATH 196
+I TH
Sbjct: 187 MIYVTH 192
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 79/186 (42%), Gaps = 25/186 (13%)
Query: 25 ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEIL-----WNGHDITQSG- 78
+ + +N+ IH+G +V G +G GKST LRM+AG ++G++ N + G
Sbjct: 18 VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGV 77
Query: 79 --IFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSL-----PALELMGLGRL 131
+F Y A+ +V +N+ + L G + + E++ L L
Sbjct: 78 GMVFQSY-----------ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHL 126
Query: 132 AKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYD-GVRLLEYIIAEHRKKGGI 190
K + LS G + ++LLDEP LD V++ I H++ G
Sbjct: 127 LDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRT 186
Query: 191 VIVATH 196
+I TH
Sbjct: 187 MIYVTH 192
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 85/199 (42%), Gaps = 31/199 (15%)
Query: 25 ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK 84
IL ++N+SI G + + G +GSGKST +++ F P G++L +GHD+ +
Sbjct: 20 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALA------- 72
Query: 85 LQLNWLS------LKDAVKEKFTVLDNVQWFE--------VLEGKQGNSLPALELM--GL 128
NWL L+D V +++DN+ + K + + + G
Sbjct: 73 -DPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGY 131
Query: 129 GRLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK-- 186
+ E+ LS G + I + DE + ALDY+ E++I +
Sbjct: 132 NTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYES----EHVIMRNMHKI 187
Query: 187 -KGGIVIVATHLPIQIEDA 204
KG VI+ H +++A
Sbjct: 188 CKGRTVIIIAHRLSTVKNA 206
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 62/142 (43%), Gaps = 19/142 (13%)
Query: 32 SIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLS 91
I G + + G NG GK+TF++MLAG +P+ G++ W D+T + YK Q
Sbjct: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW---DLTVA-----YKPQYIKAE 415
Query: 92 LKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALEL---MGLGRLAKEKARMLSMGXXXXXX 148
+ V E + +D+ K ++ EL +G+ L LS G
Sbjct: 416 YEGTVYELLSKIDS--------SKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVA 467
Query: 149 XXXXXXIDRPIWLLDEPSVALD 170
D I+LLDEPS LD
Sbjct: 468 IAATLLRDADIYLLDEPSAYLD 489
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 33 IHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGE 66
+ DG + + G NG+GK+T +++LAG P+ E
Sbjct: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE 133
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 62/142 (43%), Gaps = 19/142 (13%)
Query: 32 SIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLS 91
I G + + G NG GK+TF++MLAG +P+ G++ W D+T + YK Q
Sbjct: 378 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW---DLTVA-----YKPQYIKAE 429
Query: 92 LKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALEL---MGLGRLAKEKARMLSMGXXXXXX 148
+ V E + +D+ K ++ EL +G+ L LS G
Sbjct: 430 YEGTVYELLSKIDS--------SKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVA 481
Query: 149 XXXXXXIDRPIWLLDEPSVALD 170
D I+LLDEPS LD
Sbjct: 482 IAATLLRDADIYLLDEPSAYLD 503
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 33 IHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGE 66
+ DG + + G NG+GK+T +++LAG P+ E
Sbjct: 114 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE 147
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 84/199 (42%), Gaps = 31/199 (15%)
Query: 25 ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK 84
IL ++N+SI G + + G GSGKST +++ F P G++L +GHD+ +
Sbjct: 20 ILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVLIDGHDLALA------- 72
Query: 85 LQLNWLS------LKDAVKEKFTVLDNVQWFE--------VLEGKQGNSLPALELM--GL 128
NWL L+D V +++DN+ + K + + + G
Sbjct: 73 -DPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGY 131
Query: 129 GRLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK-- 186
+ E+ LS G + I + DE + ALDY+ E++I +
Sbjct: 132 NTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYES----EHVIMRNMHKI 187
Query: 187 -KGGIVIVATHLPIQIEDA 204
KG VI+ H +++A
Sbjct: 188 CKGRTVIIIAHRLSTVKNA 206
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 81/189 (42%), Gaps = 24/189 (12%)
Query: 25 ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK 84
IL ++N+SI G + + G +GSGKST +++ F P G++L +GHD+ +
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALA------- 70
Query: 85 LQLNWLS------LKDAVKEKFTVLDNVQWFE--------VLEGKQGNSLPALELM--GL 128
NWL L+D V +++DN+ + K + + + G
Sbjct: 71 -DPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGY 129
Query: 129 GRLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKG 188
+ E+ LS G + I + DE + ALDY+ ++ + + K
Sbjct: 130 NTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGR 189
Query: 189 GIVIVATHL 197
++I+A L
Sbjct: 190 TVIIIAARL 198
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 81/189 (42%), Gaps = 24/189 (12%)
Query: 25 ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK 84
IL ++N+SI G + + G +GSGKST +++ F P G++L +GHD+ +
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALA------- 76
Query: 85 LQLNWLS------LKDAVKEKFTVLDNVQWFE--------VLEGKQGNSLPALELM--GL 128
NWL L+D V +++DN+ + K + + + G
Sbjct: 77 -DPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGY 135
Query: 129 GRLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKG 188
+ E+ LS G + I + DE + ALDY+ ++ + + K
Sbjct: 136 NTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGR 195
Query: 189 GIVIVATHL 197
++I+A L
Sbjct: 196 TVIIIAARL 204
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 82/198 (41%), Gaps = 34/198 (17%)
Query: 21 NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI------ 74
N IL+ +N+SI G + G +G GKST + ++ F ++G+IL +GH+I
Sbjct: 352 NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTG 411
Query: 75 ---TQSGIFHQYKLQLNWLSLKDAVKEKF-----TVLDNVQWFEVLE-GKQGNS------ 119
Q G+ Q + + D VKE T D EV+E K N+
Sbjct: 412 SLRNQIGLVQQ-----DNILFSDTVKENILLGRPTATDE----EVVEAAKMANAHDFIMN 462
Query: 120 LPALELMGLGRLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEY 179
LP G E+ LS G + PI +LDE + ALD + +++
Sbjct: 463 LP----QGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQE 518
Query: 180 IIAEHRKKGGIVIVATHL 197
+ K +IVA L
Sbjct: 519 ALDVLSKDRTTLIVAHRL 536
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 79/186 (42%), Gaps = 25/186 (13%)
Query: 25 ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEIL-----WNGHDITQSG- 78
+ + +N+ IH+G +V G +G GKST LRM+AG ++G++ N + G
Sbjct: 18 VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGV 77
Query: 79 --IFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSL-----PALELMGLGRL 131
+F Y A+ +V +N+ + L G + + E++ L L
Sbjct: 78 GMVFQSY-----------ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHL 126
Query: 132 AKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYD-GVRLLEYIIAEHRKKGGI 190
K + LS G + ++LLD+P LD V++ I H++ G
Sbjct: 127 LDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRT 186
Query: 191 VIVATH 196
+I TH
Sbjct: 187 MIYVTH 192
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 85/199 (42%), Gaps = 31/199 (15%)
Query: 25 ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK 84
IL ++N+SI G + + G +GSGKST +++ F P G++L +GHD+ +
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALA------- 76
Query: 85 LQLNWLS------LKDAVKEKFTVLDNVQWFE--------VLEGKQGNSLPALELM--GL 128
NWL L+D V +++DN+ + K + + + G
Sbjct: 77 -DPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGY 135
Query: 129 GRLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK-- 186
+ E+ LS G + I + D+ + ALDY+ E++I +
Sbjct: 136 NTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYES----EHVIMRNMHKI 191
Query: 187 -KGGIVIVATHLPIQIEDA 204
KG VI+ H +++A
Sbjct: 192 CKGRTVIIIAHRLSTVKNA 210
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 73/182 (40%), Gaps = 19/182 (10%)
Query: 26 LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL 85
+R V+ I +G + L G +GSGK+T LR++AG +P+ G++ G +T K
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTD---LPPQKR 87
Query: 86 QLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPA----------LELMGLGRLAKEK 135
+ + A+ + TV DNV + G + +P L M L A
Sbjct: 88 NVGLVFQNYALFQHMTVYDNVSF-----GLREKRVPKDEMDARVRELLRFMRLESYANRF 142
Query: 136 ARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAE-HRKKGGIVIVA 194
LS G + L DEP A+D R L + + H + G +
Sbjct: 143 PHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFV 202
Query: 195 TH 196
TH
Sbjct: 203 TH 204
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 87/195 (44%), Gaps = 21/195 (10%)
Query: 25 ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK 84
+L+ +++ + G L L G++G GKST +++L F P AG + +G +I Q + +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNV-QWLR 1106
Query: 85 LQLNWLS-----LKDAVKEKFTVLDN---VQWFEVLE-GKQGN------SLPALELMGLG 129
QL +S ++ E DN V + E++ K+ N SLP +G
Sbjct: 1107 AQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVG 1166
Query: 130 RLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGG 189
+K LS G I LLDE + ALD + ++++ + + R +G
Sbjct: 1167 ----DKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR-EGR 1221
Query: 190 IVIVATHLPIQIEDA 204
IV H I++A
Sbjct: 1222 TCIVIAHRLSTIQNA 1236
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 85/193 (44%), Gaps = 22/193 (11%)
Query: 20 RNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI 79
R QIL+ +N+ + G + L G +G GKST ++++ P G + +G DI +
Sbjct: 400 RKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINV 459
Query: 80 FHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALE-----------LMGL 128
+Y ++ + ++ V T+ +N+++ G++ ++ +E +M L
Sbjct: 460 --RYLREIIGVVSQEPVLFATTIAENIRY-----GREDVTMDEIEKAVKEANAYDFIMKL 512
Query: 129 ----GRLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEH 184
L E+ LS G + I LLDE + ALD + +++ + +
Sbjct: 513 PHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKA 572
Query: 185 RKKGGIVIVATHL 197
R+ +++A L
Sbjct: 573 REGRTTIVIAHRL 585
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 87/195 (44%), Gaps = 21/195 (10%)
Query: 25 ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK 84
+L+ +++ + G L L G++G GKST +++L F P AG + +G +I Q + +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNV-QWLR 1106
Query: 85 LQLNWLS-----LKDAVKEKFTVLDN---VQWFEVLE-GKQGN------SLPALELMGLG 129
QL +S ++ E DN V + E++ K+ N SLP +G
Sbjct: 1107 AQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVG 1166
Query: 130 RLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGG 189
+K LS G I LLDE + ALD + ++++ + + R +G
Sbjct: 1167 ----DKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR-EGR 1221
Query: 190 IVIVATHLPIQIEDA 204
IV H I++A
Sbjct: 1222 TCIVIAHRLSTIQNA 1236
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 85/193 (44%), Gaps = 22/193 (11%)
Query: 20 RNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI 79
R QIL+ +N+ + G + L G +G GKST ++++ P G + +G DI +
Sbjct: 400 RKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINV 459
Query: 80 FHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALE-----------LMGL 128
+Y ++ + ++ V T+ +N+++ G++ ++ +E +M L
Sbjct: 460 --RYLREIIGVVSQEPVLFATTIAENIRY-----GREDVTMDEIEKAVKEANAYDFIMKL 512
Query: 129 ----GRLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEH 184
L E+ LS G + I LLDE + ALD + +++ + +
Sbjct: 513 PHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKA 572
Query: 185 RKKGGIVIVATHL 197
R+ +++A L
Sbjct: 573 REGRTTIVIAHRL 585
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 21/143 (14%)
Query: 32 SIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLS 91
I G + + G NG GK+TF++ LAG +P+ G+I W D+T + YK Q
Sbjct: 308 EIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEW---DLTVA-----YKPQYIKAD 359
Query: 92 LKDAVKEKFTVLD----NVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGXXXXX 147
+ V E + +D N +++ L+ +G+ L + LS G
Sbjct: 360 YEGTVYELLSKIDASKLNSNFYKT---------ELLKPLGIIDLYDREVNELSGGELQRV 410
Query: 148 XXXXXXXIDRPIWLLDEPSVALD 170
D I+LLDEPS LD
Sbjct: 411 AIAATLLRDADIYLLDEPSAYLD 433
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 33 IHDGGALVLTGTNGSGKSTFLRMLAG 58
+ +G + + G NG+GKST +++LAG
Sbjct: 44 VKEGXVVGIVGPNGTGKSTAVKILAG 69
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 79/188 (42%), Gaps = 14/188 (7%)
Query: 21 NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF 80
+ ++ L+ V+ ++ G L L G +G+GKST LR+L F S+G I +G DI+Q
Sbjct: 65 DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQ---V 121
Query: 81 HQYKLQLN-WLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALEL----------MGLG 129
Q L+ + + +D V T+ DN+++ V G A G
Sbjct: 122 TQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYR 181
Query: 130 RLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGG 189
E+ LS G I LLDE + ALD R ++ +A+
Sbjct: 182 TQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRT 241
Query: 190 IVIVATHL 197
++VA L
Sbjct: 242 TIVVAHRL 249
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 80/202 (39%), Gaps = 34/202 (16%)
Query: 25 ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK 84
I + ++SI G L G +GSGKST L +L P++G I +GHDI Q
Sbjct: 359 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQ-------- 410
Query: 85 LQLNWLSLKDAVKEKFTVLDNVQWFEVLE--GKQGNSLPALEL----------------- 125
L WL K + +L + E + +S+ A E+
Sbjct: 411 LNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFP 470
Query: 126 MGLGRLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHR 185
G + EK +LS G + I LLDE + ALD + EY++ E
Sbjct: 471 QGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAEN----EYLVQEAL 526
Query: 186 KK---GGIVIVATHLPIQIEDA 204
+ G V+V H I++A
Sbjct: 527 DRLMDGRTVLVIAHRLSTIKNA 548
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 12/173 (6%)
Query: 26 LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL 85
L ++N+ + +G +++ G NGSGK+T LR ++G P +G I NG ++ + + +Y
Sbjct: 21 LENINLEV-NGEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYS- 77
Query: 86 QLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGN-SLPALELMGLG-RLAKEKARMLSMGX 143
+L +A + TV D V +E L+G + L L+ + LG + + K LS G
Sbjct: 78 ----TNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQ 133
Query: 144 XXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATH 196
I LDEP +D ++ I E+ K+G I+ TH
Sbjct: 134 SVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEG---ILVTH 183
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 80/202 (39%), Gaps = 34/202 (16%)
Query: 25 ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK 84
I + ++SI G L G +GSGKST L +L P++G I +GHDI Q
Sbjct: 390 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQ-------- 441
Query: 85 LQLNWLSLKDAVKEKFTVLDNVQWFEVLE--GKQGNSLPALEL----------------- 125
L WL K + +L + E + +S+ A E+
Sbjct: 442 LNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFP 501
Query: 126 MGLGRLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHR 185
G + EK +LS G + I LLDE + ALD + EY++ E
Sbjct: 502 QGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAEN----EYLVQEAL 557
Query: 186 KK---GGIVIVATHLPIQIEDA 204
+ G V+V H I++A
Sbjct: 558 DRLMDGRTVLVIAHHLSTIKNA 579
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 74/182 (40%), Gaps = 37/182 (20%)
Query: 19 MRNAQQILRH---------------VNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPS 63
MR+ +ILR V+IS++ G ++ G NGSGKST + ++ GF K
Sbjct: 1 MRDTMEILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD 60
Query: 64 AGEILWNGHDIT--QSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQG-NSL 120
G + + DIT + + Y + + +KE TVL+N+ E+ G+ NSL
Sbjct: 61 EGRVYFENKDITNKEPAELYHYGI-VRTFQTPQPLKE-MTVLENLLIGEICPGESPLNSL 118
Query: 121 -----------------PALELMGLGRLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLD 163
LE + L L KA LS G + + ++D
Sbjct: 119 FYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMD 178
Query: 164 EP 165
EP
Sbjct: 179 EP 180
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 78/179 (43%), Gaps = 8/179 (4%)
Query: 25 ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQS-GIFHQY 83
+ + +N ++ G L + G NG GKST L +L G +P G+I ++ QS G Q+
Sbjct: 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI-----EVYQSIGFVPQF 74
Query: 84 KLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGX 143
S+ D V + N + + ++ AL+ + L LAK + LS G
Sbjct: 75 FSSPFAYSVLDIVLMGRSTHINT-FAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQ 133
Query: 144 XXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRL-LEYIIAEHRKKGGIVIVATHLPIQI 201
+ + LLDEP+ ALD + L +I + + V+ TH P Q+
Sbjct: 134 RQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQV 192
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 10/154 (6%)
Query: 26 LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDIT--QSGIFHQY 83
++ +++ I DG LVL G +G GK+T LR +AG +P+ G+I + + + G+F
Sbjct: 22 VKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPP 81
Query: 84 KLQ-LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSL-----PALELMGLGRLAKEKAR 137
K + + + A+ TV DN+ + L + E +GL L K R
Sbjct: 82 KERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELLNRKPR 141
Query: 138 MLSMGXXXXXXXXXXXXIDRP-IWLLDEPSVALD 170
LS G I RP ++L DEP LD
Sbjct: 142 ELS-GGQRQRVALGRAIIRRPKVFLXDEPLSNLD 174
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 35/53 (66%)
Query: 26 LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG 78
L +VNI+I +G + G +G+GK+TF+R++AG PS GE+ ++ + +G
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNG 73
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 35/53 (66%)
Query: 26 LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG 78
L +VNI+I +G + G +G+GK+TF+R++AG PS GE+ ++ + +G
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNG 73
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 29 VNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88
V+ + DG + L G +G GK+T L MLAG KP++GEI ++ D+ + I +Y+ ++
Sbjct: 22 VSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFD--DVLVNDIPPKYR-EVG 78
Query: 89 WLSLKDAVKEKFTVLDNVQW 108
+ A+ TV +N+ +
Sbjct: 79 MVFQNYALYPHMTVFENIAF 98
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 26 LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDIT 75
L ++++ + G V+ G G+GK+ FL ++AGF P +G IL +G D+T
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVT 65
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 55/134 (41%), Gaps = 6/134 (4%)
Query: 40 VLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEK 99
VL G G+GKS FL ++AG KP GE+ NG DIT + + ++ A+
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITP---LPPERRGIGFVPQDYALFPH 84
Query: 100 FTVLDNVQW---FEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGXXXXXXXXXXXXID 156
+V N+ + + E +G+ L K LS G I
Sbjct: 85 LSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQ 144
Query: 157 RPIWLLDEPSVALD 170
+ LLDEP A+D
Sbjct: 145 PRLLLLDEPLSAVD 158
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 70/182 (38%), Gaps = 37/182 (20%)
Query: 19 MRNAQQILRH---------------VNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPS 63
MR+ +ILR V+IS+ G ++ G NGSGKST + ++ GF K
Sbjct: 1 MRDTMEILRTENIVKYFGEFKALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKAD 60
Query: 64 AGEILWNGHDIT--QSGIFHQYKLQLNWLSLKDAVKEKFTVLDNV--------------- 106
G + + DIT + + Y + + +KE TVL+N+
Sbjct: 61 EGRVYFENKDITNKEPAELYHYGI-VRTFQTPQPLKE-MTVLENLLIGEINPGESPLNSL 118
Query: 107 ---QWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLD 163
+W E + LE + L L KA LS G + + ++D
Sbjct: 119 FYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMD 178
Query: 164 EP 165
EP
Sbjct: 179 EP 180
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 71/182 (39%), Gaps = 37/182 (20%)
Query: 19 MRNAQQILRH---------------VNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPS 63
MR+ +ILR V+IS++ G ++ G NGSGKST + ++ GF K
Sbjct: 1 MRDTMEILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD 60
Query: 64 AGEILWNGHDIT--QSGIFHQYKLQLNWLSLKDAVKEKFTVLDNV--------------- 106
G + + DIT + + Y + + +KE TVL+N+
Sbjct: 61 EGRVYFENKDITNKEPAELYHYGI-VRTFQTPQPLKE-MTVLENLLIGEINPGESPLNSL 118
Query: 107 ---QWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLD 163
+W E + LE + L L KA LS G + + ++D
Sbjct: 119 FYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMD 178
Query: 164 EP 165
+P
Sbjct: 179 QP 180
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 21 NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF 80
+++QILR ++ + G +G GKST +L F +P+AGEI +G I +
Sbjct: 13 DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISL- 71
Query: 81 HQYKLQLNWLSLKDAV 96
++ Q+ ++S A+
Sbjct: 72 ENWRSQIGFVSQDSAI 87
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 32/50 (64%)
Query: 26 LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDIT 75
++ +++ + G + L G NG+GK+T L +AG + G+I++NG DIT
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDIT 71
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 80/191 (41%), Gaps = 28/191 (14%)
Query: 24 QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDIT-------- 75
Q L +V++ + G + G +G+GKST +R + +P+ G +L +G ++T
Sbjct: 19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 78
Query: 76 ----QSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPA-----LELM 126
Q G+ Q+ N LS + TV NV L+ + + L L+
Sbjct: 79 KARRQIGMIFQH---FNLLSSR-------TVFGNVALPLELDNTPKDEVKRRVTELLSLV 128
Query: 127 GLGRLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVR-LLEYIIAEHR 185
GLG LS G + + L DE + ALD R +LE + +R
Sbjct: 129 GLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINR 188
Query: 186 KKGGIVIVATH 196
+ G +++ TH
Sbjct: 189 RLGLTILLITH 199
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 23 QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI 74
Q ++ V++ I G + + G NG+GKST LR+L G+ PS GE G ++
Sbjct: 24 QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNL 75
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 80/191 (41%), Gaps = 28/191 (14%)
Query: 24 QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDIT-------- 75
Q L +V++ + G + G +G+GKST +R + +P+ G +L +G ++T
Sbjct: 42 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 101
Query: 76 ----QSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPA-----LELM 126
Q G+ Q+ N LS + TV NV L+ + + L L+
Sbjct: 102 KARRQIGMIFQH---FNLLSSR-------TVFGNVALPLELDNTPKDEVKRRVTELLSLV 151
Query: 127 GLGRLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVR-LLEYIIAEHR 185
GLG LS G + + L D+ + ALD R +LE + +R
Sbjct: 152 GLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINR 211
Query: 186 KKGGIVIVATH 196
+ G +++ TH
Sbjct: 212 RLGLTILLITH 222
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 24 QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQ 76
Q+L+ + +++ G L G NGSGKST +L +P+ G++L +G + Q
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQ 85
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 73/174 (41%), Gaps = 27/174 (15%)
Query: 35 DGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKD 94
D LV+ G NG+GK+T +++LAG KP G+ DI +LN
Sbjct: 377 DSEILVMMGENGTGKTTLIKLLAGALKPDEGQ------DIP----------KLNVSMKPQ 420
Query: 95 AVKEKFTVLDNVQWFEVLEGKQGN---SLPALELMGLGRLAKEKARMLSMGXXXXXXXXX 151
+ KF +F+ + G+ N ++ + + + ++ + LS G
Sbjct: 421 KIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVL 480
Query: 152 XXXIDRPIWLLDEPSVALDYDGVRLLEYIIAE---HRKKGGIV-----IVATHL 197
I I+L+DEPS LD + + +I H KK + I+AT+L
Sbjct: 481 ALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYL 534
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 36 GGALVLTGTNGSGKSTFLRMLAGFSKPSAG 65
G L L GTNG GKST L++LAG KP+ G
Sbjct: 103 GQVLGLVGTNGIGKSTALKILAGKQKPNLG 132
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 24 QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQ 76
Q+L+ + +++ G L G NGSGKST +L +P+ G++L +G + Q
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQ 85
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 24 QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQ 76
Q+L+ + +++ G L G NGSGKST +L +P+ G++L +G + Q
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQ 85
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 79/191 (41%), Gaps = 28/191 (14%)
Query: 24 QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDIT-------- 75
Q L +V++ + G + G +G+GKST +R + +P+ G +L +G ++T
Sbjct: 42 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 101
Query: 76 ----QSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPA-----LELM 126
Q G Q+ N LS + TV NV L+ + + L L+
Sbjct: 102 KARRQIGXIFQH---FNLLSSR-------TVFGNVALPLELDNTPKDEVKRRVTELLSLV 151
Query: 127 GLGRLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVR-LLEYIIAEHR 185
GLG LS G + + L D+ + ALD R +LE + +R
Sbjct: 152 GLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINR 211
Query: 186 KKGGIVIVATH 196
+ G +++ TH
Sbjct: 212 RLGLTILLITH 222
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 84/199 (42%), Gaps = 26/199 (13%)
Query: 15 NVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI 74
N+ + +IL+ +++S+ G + + G +GSGKST L +L P+ G++ G ++
Sbjct: 9 NIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEV 68
Query: 75 TQS-----GIFHQYKL----QLNWLSLKDAVKEKFTVLDNVQWFEVLEGK-------QGN 118
+ + KL Q ++L + T L+NV + GK +G
Sbjct: 69 DYTNEKELSLLRNRKLGFVFQFHYLI------PELTALENVIVPMLKMGKPKKEAKERGE 122
Query: 119 SLPALELMGLGRLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLL-DEPSVALDYDGVRLL 177
L L +GLG K LS G + PI L DEP+ LD + +
Sbjct: 123 YL--LSELGLGDKLSRKPYELS-GGEQQRVAIARALANEPILLFADEPTGNLDSANTKRV 179
Query: 178 EYIIAEHRKKGGIVIVATH 196
I + + G +++ TH
Sbjct: 180 MDIFLKINEGGTSIVMVTH 198
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 90/194 (46%), Gaps = 19/194 (9%)
Query: 22 AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDIT------ 75
++L+ V++ G + + G++GSGKSTFLR + KPS G I+ NG +I
Sbjct: 18 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKD 77
Query: 76 -QSGIFHQYKLQLNWLSLKDAVKE-----KFTVLDNVQW--FEVL----EGKQGNSLPAL 123
Q + + +L+L L + TVL+NV +VL + +L L
Sbjct: 78 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYL 137
Query: 124 ELMGLGRLAKEKARM-LSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIA 182
+G+ A+ K + LS G ++ + L DEP+ ALD + V + I+
Sbjct: 138 AKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQ 197
Query: 183 EHRKKGGIVIVATH 196
+ ++G ++V TH
Sbjct: 198 QLAEEGKTMVVVTH 211
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 79/191 (41%), Gaps = 24/191 (12%)
Query: 24 QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQY 83
+IL+ ++ S+ G L L G +G GKST + +L F GEI +G +I H
Sbjct: 1093 EILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHT- 1151
Query: 84 KLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAK---------- 133
+ Q+ +S ++ T+ D ++ G +S+ ++ RLA
Sbjct: 1152 RSQIAIVS------QEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPE 1205
Query: 134 -------EKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK 186
++ LS G + I LLDE + ALD + ++++ + R+
Sbjct: 1206 GFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRARE 1265
Query: 187 KGGIVIVATHL 197
+++A L
Sbjct: 1266 GRTCIVIAHRL 1276
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 79/189 (41%), Gaps = 24/189 (12%)
Query: 25 ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK 84
ILR +N+ ++ G + L G++G GKST + +L + G+I +G D+
Sbjct: 433 ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRD-------- 484
Query: 85 LQLNWLSLKDAVKEKFTVLDNVQWFEVLE-GKQGNS----LPALELM-----------GL 128
+ L +L AV + L N E + GK+G + + A ++ G
Sbjct: 485 INLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGY 544
Query: 129 GRLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKG 188
L ++ LS G + I LLDE + ALD + +++ + + K
Sbjct: 545 NTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGR 604
Query: 189 GIVIVATHL 197
+I+A L
Sbjct: 605 TTIIIAHRL 613
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase
Sufc From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase
Sufc From Thermus Thermophilus Hb8
Length = 250
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 21 NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSA--GEILWNGHDITQ 76
+ + IL+ VN+ + G L G NG+GKST ++LAG + + GEIL +G +I +
Sbjct: 14 DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILE 71
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 24/197 (12%)
Query: 25 ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQY- 83
+L+ + ++ G L G NGSGKST +L +P+ G++L +G + Q H+Y
Sbjct: 32 VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQ--YEHRYL 89
Query: 84 ---------KLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQG-----NSLPALELMGLG 129
+ Q+ SL++ + T ++ K G + LP G
Sbjct: 90 HRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLP----QGYD 145
Query: 130 RLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAE--HRKK 187
E LS G + +LD+ + ALD + +E ++ E R
Sbjct: 146 TEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYS 205
Query: 188 GGIVIVATHLPIQIEDA 204
++++ HL + +E A
Sbjct: 206 RSVLLITQHLSL-VEQA 221
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 25 ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGH 72
+L+ +N I G L + G+ G+GK++ L M+ G +PS G+I +G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR 100
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%)
Query: 25 ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNG 71
+L+ +N I G L + G+ G+GK++ L M+ G +PS G+I +G
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 81
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 25 ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGH 72
+L+ +N I G L + G+ G+GK++ L M+ G +PS G+I +G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR 100
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%)
Query: 25 ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNG 71
+L+ +N I G L + G+ G+GK++ L M+ G +PS G+I +G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 69
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%)
Query: 25 ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNG 71
+L+ +N I G L + G+ G+GK++ L M+ G +PS G+I +G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 69
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 25 ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGH 72
+L+ +N I G L + G+ G+GK++ L M+ G +PS G+I +G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR 100
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%)
Query: 25 ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNG 71
+L+ +N I G L + G+ G+GK++ L M+ G +PS G+I +G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 99
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%)
Query: 25 ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNG 71
+L+ +N I G L + G+ G+GK++ L M+ G +PS G+I +G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 99
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 25 ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI 74
+L+ + I G + L G GSGK+T + +L F G+IL +G DI
Sbjct: 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDI 419
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 31/47 (65%)
Query: 25 ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNG 71
+L+++N++I G L +TG+ GSGK++ L ++ G + S G I +G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 79/195 (40%), Gaps = 26/195 (13%)
Query: 23 QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS--KPSAGEILWNGHDI------ 74
+ ILR +++ +H G + G NGSGKST LAG + + G + + G D+
Sbjct: 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPE 92
Query: 75 --TQSGIF--HQYKLQL----NWLSLKDAVKEKFT-----VLDNVQWFEVLEGKQGNSLP 121
GIF QY +++ N L+ A+ + LD + +++E K
Sbjct: 93 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEK-----I 147
Query: 122 ALELMGLGRLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYII 181
AL M L + S G ++ + +LDE LD D ++++ +
Sbjct: 148 ALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGV 207
Query: 182 AEHRKKGGIVIVATH 196
R I+ TH
Sbjct: 208 NSLRDGKRSFIIVTH 222
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse
Cftr Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse
Cftr Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse
Cftr Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse
Cftr Protein, Deltaf508 Mutant
Length = 285
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 31/47 (65%)
Query: 25 ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNG 71
+L+++N++I G L +TG+ GSGK++ L ++ G + S G I +G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 79/195 (40%), Gaps = 26/195 (13%)
Query: 23 QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS--KPSAGEILWNGHDI------ 74
+ ILR +++ +H G + G NGSGKST LAG + + G + + G D+
Sbjct: 14 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPE 73
Query: 75 --TQSGIF--HQYKLQL----NWLSLKDAVKEKFT-----VLDNVQWFEVLEGKQGNSLP 121
GIF QY +++ N L+ A+ + LD + +++E K
Sbjct: 74 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEK-----I 128
Query: 122 ALELMGLGRLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYII 181
AL M L + S G ++ + +LDE LD D ++++ +
Sbjct: 129 ALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGV 188
Query: 182 AEHRKKGGIVIVATH 196
R I+ TH
Sbjct: 189 NSLRDGKRSFIIVTH 203
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp,
I4122 Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp,
I4122 Space Group
Length = 286
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 31/47 (65%)
Query: 25 ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNG 71
+L+++N++I G L +TG+ GSGK++ L ++ G + S G I +G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 31/47 (65%)
Query: 25 ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNG 71
+L+++N++I G L +TG+ GSGK++ L ++ G + S G I +G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 31/47 (65%)
Query: 25 ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNG 71
+L+++N++I G L +TG+ GSGK++ L ++ G + S G I +G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 35.0 bits (79), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 72/193 (37%), Gaps = 27/193 (13%)
Query: 23 QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDIT------- 75
+ L+ +N I G L G GSGKST ++L F + G+I G ++
Sbjct: 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFY-DAEGDIKIGGKNVNKYNRNSI 91
Query: 76 --------QSGIFHQYKLQLNWLSLK-DAVKEK-FTVLDNVQWFEVLEGKQGNSLPALEL 125
Q I ++ N L K DA E+ + Q ++ +E +LP
Sbjct: 92 RSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIE-----ALPK--- 143
Query: 126 MGLGRLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHR 185
+ K LS G D I + DE + +LD L + + + R
Sbjct: 144 -KWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR 202
Query: 186 KKGGIVIVATHLP 198
K ++I+A L
Sbjct: 203 KNRTLIIIAHRLS 215
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 61/142 (42%), Gaps = 17/142 (11%)
Query: 43 GTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTV 102
G NG GK+T L++LAG P+ G+ + + + +++ + + K+ + +
Sbjct: 32 GKNGVGKTTVLKILAGEIIPNFGD---PNSKVGKDEVLKRFRGKEIYNYFKELYSNELKI 88
Query: 103 LDNVQWFE----VLEG----------KQGNSLPALELMGLGRLAKEKARMLSMGXXXXXX 148
+ +Q+ E L+G ++G EL+ + L + A +LS G
Sbjct: 89 VHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLL 148
Query: 149 XXXXXXIDRPIWLLDEPSVALD 170
+ +++ D+PS LD
Sbjct: 149 VAASLLREADVYIFDQPSSYLD 170
Score = 30.4 bits (67), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 62/163 (38%), Gaps = 25/163 (15%)
Query: 30 NISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW 89
N +G + + G NG GK+TF R+L GEI + +T YK Q +
Sbjct: 288 NGEAKEGEIIGILGPNGIGKTTFARIL-------VGEITADEGSVTPEKQILSYKPQRIF 340
Query: 90 LSLKDAVKEKFT-----VLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGXX 144
+ V++ L WF K+ N L RL + LS G
Sbjct: 341 PNYDGTVQQYLENASKDALSTSSWFFEEVTKRLN---------LHRLLESNVNDLSGGEL 391
Query: 145 XXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK 187
+ +++LD+PS LD + YI+A+ K+
Sbjct: 392 QKLYIAATLAKEADLYVLDQPSSYLDVEE----RYIVAKAIKR 430
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 34.3 bits (77), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 73/164 (44%), Gaps = 12/164 (7%)
Query: 20 RNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI 79
+ + IL+ ++ I G +L G NG+GK+T L +L + ++G + G + G
Sbjct: 31 KQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGY 90
Query: 80 FHQYKLQ-LNWL--SLKDAVKEKFTVLDNV---------QWFEVLEGKQGNSLPALELMG 127
+ Q + ++ SL + +E V+D V + ++ + + + L+L+G
Sbjct: 91 SAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVG 150
Query: 128 LGRLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDY 171
A++ LS G + +LDEP+ LD+
Sbjct: 151 XSAKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLDF 194
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 33.9 bits (76), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 19 MRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI 74
N +L VN S+ G + + G GSGKST + ++ P G + + D+
Sbjct: 352 FENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDV 407
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 7/129 (5%)
Query: 73 DITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLG--R 130
++ Q +++ L++++ + ++ + ++FE + G L L +GLG R
Sbjct: 798 EVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEPIAGVH-RYLRTLVDVGLGYVR 856
Query: 131 LAKEKARMLSMGXXXX---XXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK 187
L + A LS G R +++LDEP+ L +D +R L +I K
Sbjct: 857 LG-QPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDK 915
Query: 188 GGIVIVATH 196
G VIV H
Sbjct: 916 GNTVIVIEH 924
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATH 196
R +++LDEP+V L ++ VR L ++ +G VIV H
Sbjct: 827 RTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEH 866
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 31.2 bits (69), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 29 VNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEI 67
+N + + G NG+GKST + +L G P++GE+
Sbjct: 692 INFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 31.2 bits (69), Expect = 0.50, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 29 VNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEI 67
+N + + G NG+GKST + +L G P++GE+
Sbjct: 686 INFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 724
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 31.2 bits (69), Expect = 0.50, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 29 VNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEI 67
+N + + G NG+GKST + +L G P++GE+
Sbjct: 692 INFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 30.8 bits (68), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 75/179 (41%), Gaps = 25/179 (13%)
Query: 33 IHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI-----TQSGIFHQYKLQL 87
+ G L L G NG+GKST L +AG + G I + G + T+ + Y Q
Sbjct: 23 VRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSATKLALHRAYLSQQ 81
Query: 88 ----------NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKAR 137
++L+L K + +L++V L+ K G S L G + + A
Sbjct: 82 QTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLS-GGEWQRVRLAAV 140
Query: 138 MLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATH 196
+L + + LLD+P +LD L+ I++ ++G +++++H
Sbjct: 141 VLQITPQANPAGQ--------LLLLDQPMCSLDVAQQSALDKILSALSQQGLAIVMSSH 191
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 9/51 (17%)
Query: 25 ILRHVNISIHDGGALVLTGTNGSGKST----FLRMLAGFSKPSAGEILWNG 71
IL +++ SI G + L G GSGKST FLR+L + GEI +G
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-----TEGEIQIDG 81
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 75/179 (41%), Gaps = 25/179 (13%)
Query: 33 IHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI-----TQSGIFHQYKLQL 87
+ G L L G NG+GKST L +AG + G I + G + T+ + Y Q
Sbjct: 23 VRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSATKLALHRAYLSQQ 81
Query: 88 ----------NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKAR 137
++L+L K + +L++V L+ K G S L G + + A
Sbjct: 82 QTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLS-GGEWQRVRLAAV 140
Query: 138 MLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATH 196
+L + + LLD+P +LD L+ I++ ++G +++++H
Sbjct: 141 VLQITPQANPAGQ--------LLLLDQPMNSLDVAQQSALDKILSALSQQGLAIVMSSH 191
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 28.9 bits (63), Expect = 2.2, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 26 LRHVNISIHDGGALVLTGTNGSGKSTF 52
L+++++ I G +VLTG +GSGKS+
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSL 60
Score = 27.3 bits (59), Expect = 7.6, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 26 LRHVNISIHDGGALVLTGTNGSGKSTFL 53
L++V++ I G + +TG +GSGKST +
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLV 667
>pdb|3A4L|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4L|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4M|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4M|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4N|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4N|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3AM1|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Anticodon-StemLOOP TRUNCATED TRNA(SEC)
Length = 260
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/77 (20%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 39 LVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI------FHQYKLQLNWLSL 92
++LTG G GKSTF + LA + +++ G D+ + + ++ + + +
Sbjct: 7 IILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKYEEFIKKSTYRLI 66
Query: 93 KDAVKEKFTVLDNVQWF 109
A+K + ++D+ ++
Sbjct: 67 DSALKNYWVIVDDTNYY 83
>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
pdb|4F4J|B Chain B, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
Length = 202
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 15/48 (31%)
Query: 39 LVLTGTNGSGKSTFLRML-------AGFSKPS------AGEILWNGHD 73
+V++G +G+GKST L+ L GFS PS AGE+ NG D
Sbjct: 20 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVPSTTRTPRAGEV--NGKD 65
>pdb|1Y63|A Chain A, Initial Crystal Structural Analysis Of A Probable Kinase
From Leishmania Major Friedlin
Length = 184
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 36 GGALVLTGTNGSGKSTFLRMLA----GFSKPSAGEILWNGHDITQ 76
G +++TGT G+GK++ M+A GF G+++ H T+
Sbjct: 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTE 54
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 73/179 (40%), Gaps = 25/179 (13%)
Query: 33 IHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI-----TQSGIFHQYKLQL 87
+ G L L G NG+GKST L AG + G I + G + T+ + Y Q
Sbjct: 23 VRAGEILHLVGPNGAGKSTLLARXAGXTS-GKGSIQFAGQPLEAWSATKLALHRAYLSQQ 81
Query: 88 ----------NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKAR 137
++L+L K + +L++V L+ K G S L G + + A
Sbjct: 82 QTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLS-GGEWQRVRLAAV 140
Query: 138 MLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATH 196
+L + + LLDEP +LD L+ I++ ++G ++ ++H
Sbjct: 141 VLQITPQANPAGQ--------LLLLDEPXNSLDVAQQSALDKILSALSQQGLAIVXSSH 191
>pdb|3ZHE|A Chain A, Structure Of The C. Elegans Smg5-smg7 Complex
pdb|3ZHE|C Chain C, Structure Of The C. Elegans Smg5-smg7 Complex
Length = 420
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
Query: 109 FEVLEGKQG--NSLPALELMGLGRLA----KEKARMLSMGXXXXXXXXXXXXIDRPIWLL 162
F VL G + N L LM LG+LA K+ +L +D IW L
Sbjct: 147 FHVLAGLRADLNVAQKLRLMILGQLADAPYKKGTELLEYLKFPQKESTDKLMVDFVIWAL 206
Query: 163 DEPSVALDYD--GVRLLEYIIAEHRKK 187
+E S +DY G++++ AE +K
Sbjct: 207 NEKSKRMDYQMTGIKIVNEFKAEIEQK 233
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 26 LRHVNISIHDGGALVLTGTNGSGKSTF 52
L+++++ I G +VLTG +GSGKS+
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSL 60
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 26 LRHVNISIHDGGALVLTGTNGSGKSTFL 53
L++V++ I G + +TG +GSGKST +
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLV 667
>pdb|3ADB|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Selenocysteine Trna And Amppnp (Crystal Type 1)
pdb|3ADB|B Chain B, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Selenocysteine Trna And Amppnp (Crystal Type 1)
pdb|3ADC|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Selenocysteine Trna And Amppnp (Crystal Type 2)
pdb|3ADC|B Chain B, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Selenocysteine Trna And Amppnp (Crystal Type 2)
pdb|3ADD|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Selenocysteine Trna And Amppnp (Crystal Type 3)
pdb|3ADD|B Chain B, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Selenocysteine Trna And Amppnp (Crystal Type 3)
Length = 259
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/77 (20%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 39 LVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI------FHQYKLQLNWLSL 92
++LTG G GKSTF + LA + +++ G D+ + + ++ + + +
Sbjct: 14 IILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKYEEFIKKSTYRLI 73
Query: 93 KDAVKEKFTVLDNVQWF 109
A+K + ++D+ ++
Sbjct: 74 DSALKNYWVIVDDTNYY 90
>pdb|2O8R|A Chain A, Crystal Structure Of Polyphosphate Kinase From
Porphyromonas Gingivalis
pdb|2O8R|B Chain B, Crystal Structure Of Polyphosphate Kinase From
Porphyromonas Gingivalis
Length = 705
Score = 28.1 bits (61), Expect = 3.9, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 10/70 (14%)
Query: 156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHR----------KKGGIVIVATHLPIQIEDAM 205
D + LL E +++ D +RL +Y +AE+ + G V V L + ++
Sbjct: 355 DYVVRLLXEAAISPDVSEIRLTQYRVAENSSIISALEAAAQSGKKVSVFVELKARFDEEN 414
Query: 206 NLRLPPRFPR 215
NLRL R R
Sbjct: 415 NLRLSERXRR 424
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 73/179 (40%), Gaps = 25/179 (13%)
Query: 33 IHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI-----TQSGIFHQYKLQL 87
+ G L L G NG+GKST L AG + G I + G + T+ + Y Q
Sbjct: 23 VRAGEILHLVGPNGAGKSTLLARXAGXTS-GKGSIQFAGQPLEAWSATKLALHRAYLSQQ 81
Query: 88 ----------NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKAR 137
++L+L K + +L++V L+ K G S L G + + A
Sbjct: 82 QTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLS-GGEWQRVRLAAV 140
Query: 138 MLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATH 196
+L + + LLDEP +LD L+ I++ ++G ++ ++H
Sbjct: 141 VLQITPQANPAGQ--------LLLLDEPXNSLDVAQQSALDKILSALCQQGLAIVXSSH 191
>pdb|1U6G|C Chain C, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
Length = 1230
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 38 ALVLTGTNGSGKSTFLRMLAG--FSKPSA 64
ALV+TGTN G LRML G +S+ +A
Sbjct: 761 ALVVTGTNNLGYMDLLRMLTGPVYSQSTA 789
>pdb|4A0C|A Chain A, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|B Chain B, Structure Of The Cand1-Cul4b-Rbx1 Complex
Length = 1253
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 38 ALVLTGTNGSGKSTFLRMLAG--FSKPSA 64
ALV+TGTN G LRML G +S+ +A
Sbjct: 784 ALVVTGTNNLGYMDLLRMLTGPVYSQSTA 812
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 26 LRHVNISIHDGGALVLTGTNGSGKSTF 52
L+++++ I G +VLTG +GSGKS+
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSL 60
>pdb|3DMD|B Chain B, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3DMD|A Chain A, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3DMD|C Chain C, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3E70|C Chain C, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
Length = 328
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 39 LVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLK 93
++ G NGSGK+T + LA + K ++ D ++G Q + + +K
Sbjct: 132 IMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVK 186
>pdb|1EWR|A Chain A, Crystal Structure Of Taq Muts
pdb|1EWR|B Chain B, Crystal Structure Of Taq Muts
Length = 649
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 39 LVLTGTNGSGKSTFLRMLA 57
+++TG N +GKSTFLR A
Sbjct: 463 VLITGPNXAGKSTFLRQTA 481
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 26.9 bits (58), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 63/163 (38%), Gaps = 24/163 (14%)
Query: 29 VNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPS----AGEILWNGHDITQSGIFHQYK 84
+++ I + + G + SGKST + + P+ +G +L+ G D+ K
Sbjct: 27 ISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRK 86
Query: 85 LQLNWLSL--KDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARM---- 138
++ ++L + A + + ++ F+ G EL+ A EK RM
Sbjct: 87 IRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELI---EKASEKLRMVRLN 143
Query: 139 -----------LSMGXXXXXXXXXXXXIDRPIWLLDEPSVALD 170
LS G +D + +LDEP+ ALD
Sbjct: 144 PEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALD 186
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,102,645
Number of Sequences: 62578
Number of extensions: 235087
Number of successful extensions: 900
Number of sequences better than 100.0: 116
Number of HSP's better than 100.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 723
Number of HSP's gapped (non-prelim): 152
length of query: 229
length of database: 14,973,337
effective HSP length: 95
effective length of query: 134
effective length of database: 9,028,427
effective search space: 1209809218
effective search space used: 1209809218
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)