BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027067
(229 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C8T1|AB1I_ARATH ABC transporter I family member 1 OS=Arabidopsis thaliana GN=ABCI1
PE=2 SV=1
Length = 229
Score = 422 bits (1085), Expect = e-117, Method: Compositional matrix adjust.
Identities = 203/229 (88%), Positives = 219/229 (95%)
Query: 1 MTLRKPPLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS 60
M++R+P +PRLLL+NVSCMRNAQQILRHVN+S+HDGGALVLTGTNGSGKSTFLRMLAGFS
Sbjct: 1 MSIRRPQIPRLLLQNVSCMRNAQQILRHVNVSLHDGGALVLTGTNGSGKSTFLRMLAGFS 60
Query: 61 KPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSL 120
KPSAGEILWNGHDITQSGIF QYKLQLNW+SLKDA+KE+FTVLDNVQWFE+LE K G +
Sbjct: 61 KPSAGEILWNGHDITQSGIFQQYKLQLNWISLKDAIKERFTVLDNVQWFELLENKIGKAQ 120
Query: 121 PALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYI 180
PALELMGLGRL KEK+RMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD +GVRLLEYI
Sbjct: 121 PALELMGLGRLVKEKSRMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDDEGVRLLEYI 180
Query: 181 IAEHRKKGGIVIVATHLPIQIEDAMNLRLPPRFPRRMTLVDMLDRADIS 229
IAEHRKKGGIVIVATHLPI IEDAM LRLPPRFPR+MTL+DMLDRADIS
Sbjct: 181 IAEHRKKGGIVIVATHLPIDIEDAMILRLPPRFPRKMTLIDMLDRADIS 229
>sp|Q2VZJ1|CCMA_MAGSA Cytochrome c biogenesis ATP-binding export protein CcmA
OS=Magnetospirillum magneticum (strain AMB-1 / ATCC
700264) GN=ccmA PE=3 SV=1
Length = 217
Score = 152 bits (383), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 123/201 (61%), Gaps = 7/201 (3%)
Query: 14 KNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHD 73
KN++C+R + + + S+ GGALVL G NGSGKS+ LR+LAG KP+ G + WNG
Sbjct: 9 KNLACVRGGRVVFAGLGFSLSAGGALVLLGPNGSGKSSLLRVLAGLLKPAHGLLAWNGEA 68
Query: 74 ITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG----KQGNSL-PALELMGL 128
+ + H + ++L DAVK +V +N++++ L + G ++ AL GL
Sbjct: 69 LAEDPEAHAART--HYLGHHDAVKPVLSVAENLRFWAHLHDPHAERAGRAVDAALSRFGL 126
Query: 129 GRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKG 188
RLA +MLS GQ++R LARLLA P+WLLDEP+ ALD +++LE ++AEHR G
Sbjct: 127 ARLATIPGKMLSAGQKRRTNLARLLAAPSPLWLLDEPTTALDKASIKVLEDVLAEHRAAG 186
Query: 189 GIVIVATHLPIQIEDAMNLRL 209
G+V+++TH I + A L L
Sbjct: 187 GMVVLSTHADINMPGAQELHL 207
>sp|Q6NDA6|CCMA_RHOPA Cytochrome c biogenesis ATP-binding export protein CcmA
OS=Rhodopseudomonas palustris (strain ATCC BAA-98 /
CGA009) GN=ccmA PE=3 SV=1
Length = 200
Score = 132 bits (332), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 112/193 (58%), Gaps = 6/193 (3%)
Query: 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW 69
RL +++ C+R +++ + G AL L G NG+GK++ LR++AG P AG I
Sbjct: 2 RLSGRDLRCVRGGREVFAGLAFEASGGEALALVGHNGAGKTSLLRLIAGLLTPEAGTITL 61
Query: 70 NGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQ-WFEVLEGKQGNSLPALELMGL 128
+G + Q ++L +DA+K +V +N+ W + L G++ + ++ +GL
Sbjct: 62 DGGEPDTP-----VAEQAHYLGHRDALKPSLSVGENLGFWRDFLGGERTDLSAGIKAVGL 116
Query: 129 GRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKG 188
G A+ A LS GQR+RL +ARLL + RPIWLLDEP+ ALD G L ++ EH +G
Sbjct: 117 GHAAELPAAYLSAGQRRRLSIARLLVVRRPIWLLDEPTSALDVKGQELFVGLMQEHLARG 176
Query: 189 GIVIVATHLPIQI 201
GI++ ATH P+ I
Sbjct: 177 GIIVAATHTPLGI 189
>sp|Q13DS7|CCMA_RHOPS Cytochrome c biogenesis ATP-binding export protein CcmA
OS=Rhodopseudomonas palustris (strain BisB5) GN=ccmA
PE=3 SV=1
Length = 200
Score = 130 bits (328), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 109/189 (57%), Gaps = 6/189 (3%)
Query: 14 KNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHD 73
+ + C+R +++ + G AL L G NG+GK++ LR++AG P+AG I ++G +
Sbjct: 6 RGLRCVRGGREVFDGLGFEAAGGEALALVGHNGAGKTSLLRLIAGLLAPAAGTITFDGGE 65
Query: 74 ITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQ-WFEVLEGKQGNSLPALELMGLGRLA 132
Q ++L +DA+K +V +N+ W E L G+ + A+E +GL A
Sbjct: 66 PDTP-----VAEQAHYLGHRDALKPSLSVTENLAFWREFLGGEPTDLPAAIEAVGLAHAA 120
Query: 133 KEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVI 192
+ A LS GQR+RL +ARLL + RPIWLLDEP+ ALD G ++++H GG++I
Sbjct: 121 ELPAAYLSAGQRRRLSIARLLVVRRPIWLLDEPTSALDVRGQEAFGRLMSDHLAGGGLII 180
Query: 193 VATHLPIQI 201
ATH P+ I
Sbjct: 181 AATHSPLGI 189
>sp|Q2J3F7|CCMA_RHOP2 Cytochrome c biogenesis ATP-binding export protein CcmA
OS=Rhodopseudomonas palustris (strain HaA2) GN=ccmA PE=3
SV=1
Length = 200
Score = 130 bits (326), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 113/193 (58%), Gaps = 6/193 (3%)
Query: 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW 69
RL + + C+R +++ ++ G AL L G NG+GK++ LR++AG P+AG I +
Sbjct: 2 RLSGRGLRCVRGGREVFDGLDFEAAGGEALALIGRNGAGKTSLLRLIAGLLMPAAGSIDF 61
Query: 70 NGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQ-WFEVLEGKQGNSLPALELMGL 128
+G + Q ++L +DA+K +V++N+ W + L G+ + + + +GL
Sbjct: 62 DGSEPDT-----PVAEQAHYLGHRDALKPSLSVVENLAFWRDFLGGEPTDLMAGITAVGL 116
Query: 129 GRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKG 188
A+ A LS GQR+RL +ARLL + RPIWLLDEP+ ALD G + ++++H G
Sbjct: 117 SHAAELPAAYLSAGQRRRLSIARLLVVRRPIWLLDEPTSALDVRGQAMFARLMSDHLASG 176
Query: 189 GIVIVATHLPIQI 201
G+++ ATH P+ I
Sbjct: 177 GLIVAATHSPLGI 189
>sp|Q2Y9Q1|CCMA_NITMU Cytochrome c biogenesis ATP-binding export protein CcmA
OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB
11849) GN=ccmA PE=3 SV=1
Length = 206
Score = 129 bits (323), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 116/205 (56%), Gaps = 5/205 (2%)
Query: 8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEI 67
+P L +++C+R +++ VN + GG + + G NGSGK++ LRML G + P+ GEI
Sbjct: 1 MPTLEGIDLTCIRGDRKLFSGVNFLLESGGLMQVQGPNGSGKTSLLRMLCGLASPAEGEI 60
Query: 68 LWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG---KQGNSLPALE 124
W+G I G Y + +L VK+ T ++N++ L G + + AL+
Sbjct: 61 RWDGTQIRSLG--GDYFGAMTYLGHLGGVKDDLTAIENLRISSALGGVDLDERKAHDALQ 118
Query: 125 LMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEH 184
MGLG A++LS GQR+R+ LARLL +W+LDEP ALD V+L++ +I H
Sbjct: 119 HMGLGGRELLPAKVLSQGQRRRVTLARLLVCGTVLWILDEPLTALDTSAVKLVQGLIERH 178
Query: 185 RKKGGIVIVATHLPIQIEDAMNLRL 209
+ GG++++ TH I+I A RL
Sbjct: 179 LEHGGMIVMTTHQEIEIAGAAIQRL 203
>sp|Q5FQN4|CCMA_GLUOX Cytochrome c biogenesis ATP-binding export protein CcmA
OS=Gluconobacter oxydans (strain 621H) GN=ccmA PE=3 SV=1
Length = 211
Score = 127 bits (319), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 120/209 (57%), Gaps = 20/209 (9%)
Query: 5 KPPLP-RLL-LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP 62
PP+P RLL +++V+ R + +L V++++ G A++LTG NG+GKST LR ++G +P
Sbjct: 9 TPPVPGRLLDVEDVTVFRGDRLVLDGVSLTLDAGDAMILTGPNGAGKSTLLRTISGLRRP 68
Query: 63 SAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLP- 121
+GE++ G L WL +DA+K T+ N+ E L NSL
Sbjct: 69 DSGEVIRYG--------------DLAWLGHQDALKPGLTLAQNLALAEKL---GTNSLSD 111
Query: 122 ALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYII 181
ALE + L L AR+LS GQ++R AR++ +WLLDEP+V LD + L ++
Sbjct: 112 ALEALDLTHLTDLPARLLSSGQKRRAAFARVMLSGALLWLLDEPTVGLDVASIERLGAVM 171
Query: 182 AEHRKKGGIVIVATHLPIQIEDAMNLRLP 210
A HR KGG +IV TH+P+ +++ + LP
Sbjct: 172 AAHRAKGGAMIVTTHVPLPLDNTRSHELP 200
>sp|Q32I01|CCMA_SHIDS Cytochrome c biogenesis ATP-binding export protein CcmA OS=Shigella
dysenteriae serotype 1 (strain Sd197) GN=ccmA PE=3 SV=2
Length = 207
Score = 126 bits (316), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 111/194 (57%), Gaps = 3/194 (1%)
Query: 11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN 70
L ++ + C R+ + + ++ +++ G + +TG+NG+GK+ LR+L G S+P AGE+LW
Sbjct: 4 LEVRELLCERDERTLFSGLSFTLNAGEWVQITGSNGAGKTMLLRLLTGLSRPDAGEVLWQ 63
Query: 71 GHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGR 130
G + Q + Y L W+ + +K + T L+N+ ++ +G L AL GL
Sbjct: 64 GQPLHQ--VRDSYHQNLLWIGHQPGIKTRLTALENLHFYH-RDGDTAQCLEALAQAGLAG 120
Query: 131 LAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGI 190
LS GQ++R+ LARL +W+LDEP A+D +GV L +A+H ++GGI
Sbjct: 121 FEDIPVNQLSAGQQRRVALARLWLTRATLWILDEPFTAIDVNGVDRLTQRMAQHTEQGGI 180
Query: 191 VIVATHLPIQIEDA 204
VI+ TH P+ + ++
Sbjct: 181 VILTTHQPLNVAES 194
>sp|Q1MAL7|CCMA_RHIL3 Cytochrome c biogenesis ATP-binding export protein CcmA
OS=Rhizobium leguminosarum bv. viciae (strain 3841)
GN=ccmA PE=3 SV=1
Length = 215
Score = 125 bits (314), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/188 (38%), Positives = 111/188 (59%), Gaps = 10/188 (5%)
Query: 29 VNISIH--DGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ 86
VNIS H G ALVLTG NGSGKST LR++AG +P G +++ HD G H ++
Sbjct: 19 VNISFHLAAGEALVLTGKNGSGKSTLLRVVAGLLRPEKGTVIF--HDEESPGGRHAGEVS 76
Query: 87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLP-----ALELMGLGRLAKEKARMLSM 141
++L ++A+K + TV +N+ ++ G G++ A + +GL + LS
Sbjct: 77 -HYLGHRNAMKNELTVAENLDFWRAFLGNTGSAAALSVEDATDAVGLSGITHLPFGYLSA 135
Query: 142 GQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQI 201
GQ++R+ A+LL RP+W+LDEP+ ALD RL +I H +KGGIV+ ATH P+ +
Sbjct: 136 GQQRRIAFAKLLVAHRPVWILDEPTAALDASADRLFADLIEAHLEKGGIVLAATHQPLGL 195
Query: 202 EDAMNLRL 209
++ L++
Sbjct: 196 RNSQELKM 203
>sp|Q92L55|CCMA_RHIME Cytochrome c biogenesis ATP-binding export protein CcmA
OS=Rhizobium meliloti (strain 1021) GN=ccmA PE=3 SV=1
Length = 207
Score = 123 bits (308), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 116/206 (56%), Gaps = 11/206 (5%)
Query: 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEI-L 68
RL+ + +S R I ++ ++ G ALV+TG NG+GKST LR+LAG +P G + L
Sbjct: 2 RLMAEGLSARRGEDLIFNDISFALAAGEALVVTGPNGAGKSTLLRVLAGLLEPEGGRVRL 61
Query: 69 WNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQ-WFEVLEGKQGNS----LPAL 123
+G SG H +L ++L ++A+K + TV +N+ W L G S + A
Sbjct: 62 EDG----PSGFEHPRELS-HYLGHRNAMKRELTVEENLTFWQRFLGDSPGGSGIGLVEAA 116
Query: 124 ELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAE 183
E +GL + LS GQ++R+ +A+L+ RPIWLLDEP+ ALD RL ++A
Sbjct: 117 EAVGLADIIHLPFGYLSAGQQRRMAMAKLIVAFRPIWLLDEPTAALDLSADRLFAGLVAA 176
Query: 184 HRKKGGIVIVATHLPIQIEDAMNLRL 209
H +GGIV+ ATH P+ A +L +
Sbjct: 177 HLDRGGIVVAATHQPLGFAGAKSLEM 202
>sp|Q478L3|CCMA_DECAR Cytochrome c biogenesis ATP-binding export protein CcmA
OS=Dechloromonas aromatica (strain RCB) GN=ccmA PE=3
SV=1
Length = 204
Score = 122 bits (306), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 108/190 (56%), Gaps = 5/190 (2%)
Query: 15 NVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI 74
N+ C+R +++ ++ + G L L G NG+GK++ LRML G P AGEI W G I
Sbjct: 6 NLECVRGERRLFAGLDFKLEGGELLNLQGRNGAGKTSLLRMLIGLLPPEAGEIRWKGKSI 65
Query: 75 TQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVL---EGKQGNSLPALELMGLGRL 131
G ++ L +L +A+KE+ T L+N+ L E + +++ ALE +GL
Sbjct: 66 KTQG--DDFRADLCYLGHLNAIKEELTPLENLLAAAHLADEELSEDDAIDALEQVGLAGR 123
Query: 132 AKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIV 191
+ LS GQ++R+ LARL+ RP+W+LDEP VALD V L II+ H ++GG+
Sbjct: 124 EDLACKYLSQGQKRRVALARLVKEKRPLWILDEPFVALDVAAVDWLAGIISGHLQRGGMA 183
Query: 192 IVATHLPIQI 201
++ TH + I
Sbjct: 184 VMTTHQQVNI 193
>sp|Q21JK3|CCMA_SACD2 Cytochrome c biogenesis ATP-binding export protein CcmA
OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 /
DSM 17024) GN=ccmA PE=3 SV=1
Length = 223
Score = 122 bits (305), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 117/226 (51%), Gaps = 25/226 (11%)
Query: 13 LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN-- 70
+++++C R+ + + ++ + G + + G+NG+GK+T +R++AG S GE+LWN
Sbjct: 1 MRSLACERDERLLFSDLSANFEAGDIVQILGSNGAGKTTLMRIVAGLSDSYTGEVLWNNA 60
Query: 71 ---GHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALEL-- 125
G+D S ++ + VK+ T L+N++W+ L G + S A+++
Sbjct: 61 PHRGYDFFASVLYFGHAT---------GVKQTLTALENLRWYFGLNGNKNTSAQAIDVSE 111
Query: 126 ---------MGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRL 176
+GL +S GQ++R+ LARL PIWLLDEP A+D GV+
Sbjct: 112 AQLEAALHKVGLAGYEDVPCHQMSAGQKRRVALARLYCSKAPIWLLDEPFTAIDVGGVQQ 171
Query: 177 LEYIIAEHRKKGGIVIVATHLPIQIEDAMNLRLPPRFPRRMTLVDM 222
LE +I H + GGIV++ +H P+ + + + + P R DM
Sbjct: 172 LESLIRAHAESGGIVLLTSHQPVSVPNLKTVDINQYRPLRGQKSDM 217
>sp|O33570|CCMA_RHOS4 Cytochrome c biogenesis ATP-binding export protein CcmA
OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 /
NCIB 8253 / DSM 158) GN=ccmA PE=3 SV=1
Length = 210
Score = 121 bits (303), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 107/201 (53%), Gaps = 14/201 (6%)
Query: 11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN 70
L + N++C R +L V+ + G AL+L G NG GK+T LR +AG AGEI
Sbjct: 3 LTVTNLACARGGVTVLERVSFRLSRGAALILRGPNGIGKTTLLRTVAGLQPAVAGEISMP 62
Query: 71 GHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGR 130
+ + + D +K TV +N+ ++ + G + A+E M L
Sbjct: 63 PEAVA-------------YAAHADGLKATLTVAENLAFWAAIYGTD-RAARAIERMNLAA 108
Query: 131 LAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGI 190
LA +A+ LS GQ++RL LARLL RP+W+LDEP+V+LD V L ++ H +GG
Sbjct: 109 LADRQAQNLSAGQKRRLGLARLLVTGRPLWVLDEPTVSLDAASVALFGDVVRTHLAEGGA 168
Query: 191 VIVATHLPIQIEDAMNLRLPP 211
++ATH+ + + +A L L P
Sbjct: 169 ALMATHIDLGLAEAEVLDLAP 189
>sp|P52218|CCMA_PARDP Cytochrome c biogenesis ATP-binding export protein CcmA
OS=Paracoccus denitrificans (strain Pd 1222) GN=ccmA
PE=1 SV=2
Length = 210
Score = 120 bits (302), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 108/202 (53%), Gaps = 16/202 (7%)
Query: 11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN 70
L +++++ R + + V +++ GGALVL G NG GK+T LR LAG
Sbjct: 4 LAVRDLAVARGGLRAVEGVCFNLNAGGALVLRGPNGIGKTTLLRTLAGLQP--------- 54
Query: 71 GHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQ-WFEVLEGKQGNSLPALELMGLG 129
SG+ + + D +K TV +N++ W E+ G+ N ALE M L
Sbjct: 55 ----LVSGVIEAAPDAIAYAGHSDGLKPALTVTENLRFWAEIFGGR--NIDAALEAMNLR 108
Query: 130 RLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGG 189
LA A LS GQ++RL LARL+ RP+WLLDEP+V+LD D V L ++ H +GG
Sbjct: 109 DLANRPAHALSAGQKRRLGLARLMVTGRPVWLLDEPTVSLDRDSVALFAAMLRAHLGRGG 168
Query: 190 IVIVATHLPIQIEDAMNLRLPP 211
++ATH+ + + +A L L P
Sbjct: 169 AAVIATHIDLGLPEAEILELGP 190
>sp|Q98EA4|CCMA_RHILO Cytochrome c biogenesis ATP-binding export protein CcmA
OS=Rhizobium loti (strain MAFF303099) GN=ccmA PE=3 SV=1
Length = 201
Score = 120 bits (302), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 111/197 (56%), Gaps = 7/197 (3%)
Query: 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW 69
RL+ +N+ R + + V ++ G ALV+TG NGSGKST LR++AG + G +L
Sbjct: 2 RLIAENLGGERGGEAVFSGVGFALDQGQALVVTGPNGSGKSTLLRIIAGLLPKAEGRLLL 61
Query: 70 -NGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLP-ALELMG 127
NG D F ++L ++A+K +V++N++++ G+ + + AL+ +G
Sbjct: 62 ENGGDD-----FPSIASACHYLGHQNAMKTALSVVENLRFWRDFNGRGDSGVEEALDTVG 116
Query: 128 LGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK 187
LG + LS GQR+R +A+LL RP+WLLDEP+ LD ++A H
Sbjct: 117 LGGVGHLPFGYLSTGQRRRAAIAKLLVSHRPLWLLDEPTAGLDKASEARFAGLMAGHCAG 176
Query: 188 GGIVIVATHLPIQIEDA 204
GG+++ ATHLP+ IE A
Sbjct: 177 GGMIVAATHLPLGIEGA 193
>sp|Q4ZQZ7|CCMA_PSEU2 Cytochrome c biogenesis ATP-binding export protein CcmA
OS=Pseudomonas syringae pv. syringae (strain B728a)
GN=ccmA PE=3 SV=1
Length = 215
Score = 120 bits (301), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 108/195 (55%), Gaps = 6/195 (3%)
Query: 6 PPLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAG 65
P P L ++C R+ + + ++++ +H G L ++G NG GK++ LR+L G +P+AG
Sbjct: 3 PATPFLQATALACERDGRMLFENLDLHLHTGDMLQISGPNGCGKTSLLRLLCGLMQPTAG 62
Query: 66 EILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVL---EGKQGNSLP- 121
+IL + + + K W+ A+K+ T L+N+ W L +G +++
Sbjct: 63 QILLDAQPLGRQPAAPGRKPL--WIGHAPAIKDVLTPLENLSWLSALHQPDGADADTIAT 120
Query: 122 ALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYII 181
AL+ +GL LS GQ++R+ LARL P+WLLDEP ALD G+ LE +
Sbjct: 121 ALDAVGLAGFEDVPCHTLSAGQQRRVALARLYLPGPPLWLLDEPFTALDRQGIEQLEKHL 180
Query: 182 AEHRKKGGIVIVATH 196
AEH + GG++++ TH
Sbjct: 181 AEHCEHGGMIVMTTH 195
>sp|Q5NQX0|CCMA_ZYMMO Cytochrome c biogenesis ATP-binding export protein CcmA
OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 /
ZM4 / CP4) GN=ccmA PE=3 SV=2
Length = 221
Score = 120 bits (301), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 111/225 (49%), Gaps = 19/225 (8%)
Query: 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEI- 67
RL +VSC+R + + H++ + G A+++TG NG GKS+ LR+LAGF KP +G I
Sbjct: 12 ARLACHDVSCLRGDRLLFTHLSFEVKAGEAVLITGANGIGKSSLLRLLAGFLKPFSGHIE 71
Query: 68 LWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMG 127
W + A+ + + ++ L+G G A+ +M
Sbjct: 72 KWGRVAFADEAL---------------AMDRHLPLEKALAYWAALDGVLGAEKEAMAVMA 116
Query: 128 LGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK 187
L LA R+LS GQRKR LARLLA IWLLDEP+ LD VR L +I HR+K
Sbjct: 117 LDILADSPVRLLSTGQRKRAVLARLLASQAAIWLLDEPANGLDAASVRALIEMIEHHRQK 176
Query: 188 GGIVIVATHLPIQIEDAMNLRLP---PRFPRRMTLVDMLDRADIS 229
GGI++ +H + + D L L + D+LD + S
Sbjct: 177 GGIILAVSHQGLDMADYKTLSLENFVANSGQSSGFFDLLDESHFS 221
>sp|Q166I9|CCMA_ROSDO Cytochrome c biogenesis ATP-binding export protein CcmA
OS=Roseobacter denitrificans (strain ATCC 33942 / OCh
114) GN=ccmA PE=3 SV=1
Length = 206
Score = 119 bits (299), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 109/199 (54%), Gaps = 14/199 (7%)
Query: 13 LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGH 72
+ ++ R IL V+ + +G AL+L G NGSGK+T LR LAG P AG+I
Sbjct: 5 VDDLCVTRGGVPILSGVSFDLAEGAALILQGPNGSGKTTLLRTLAGLQPPLAGQI----- 59
Query: 73 DITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLA 132
SG + ++ + + D +K +V +N++++ + G+ + PAL+ L LA
Sbjct: 60 ----SGT----EDRIAYAAHSDGLKSMLSVAENLRFWAAVFGRS-DIAPALQAFDLHDLA 110
Query: 133 KEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVI 192
A LS GQ++RL LARLL RP+W+LDEP+V+LD V + + H GG +
Sbjct: 111 DRLAGTLSAGQKRRLGLARLLVTGRPVWMLDEPTVSLDKRAVEMFAAAVEAHLATGGSAL 170
Query: 193 VATHLPIQIEDAMNLRLPP 211
+ATH+ + + DA L + P
Sbjct: 171 IATHIDLGLRDAQVLDVGP 189
>sp|Q5E3S7|CCMA_VIBF1 Cytochrome c biogenesis ATP-binding export protein CcmA OS=Vibrio
fischeri (strain ATCC 700601 / ES114) GN=ccmA PE=3 SV=1
Length = 204
Score = 119 bits (299), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 109/194 (56%), Gaps = 4/194 (2%)
Query: 11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN 70
L ++NV+C+R+ + + +N +I DG + + G NG+GK+T LR++AG G+I W
Sbjct: 2 LEIRNVTCIRDERVLFERLNFTISDGELIQIEGQNGAGKTTLLRIIAGLGYADEGDIFWK 61
Query: 71 GHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSL--PALELMGL 128
I Q+ ++ L +L VK + T +N+ +++ + + AL +GL
Sbjct: 62 NESIKQNR--EEFHSDLLFLGHHTGVKRELTAFENLAFYQSMHDNYNEAAIWDALARVGL 119
Query: 129 GRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKG 188
A LS GQ++R+ LARL + +W+LDEP A+D GV++LE + +H K+G
Sbjct: 120 AGREDVAAGQLSAGQQRRVALARLWLSNHKLWILDEPLTAIDKQGVKVLEKLFMDHAKQG 179
Query: 189 GIVIVATHLPIQIE 202
GIV++ TH + I+
Sbjct: 180 GIVLLTTHQDLFID 193
>sp|Q52733|CCMA_RHIET Cytochrome c biogenesis ATP-binding export protein CcmA
OS=Rhizobium etli GN=ccmA PE=3 SV=1
Length = 215
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 115/206 (55%), Gaps = 10/206 (4%)
Query: 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW 69
L +N++ R I +++ + G ALVLTG NGSGKST LR++AG KP G +++
Sbjct: 2 HLTAENLAARRGEDMIFINISFYLAAGEALVLTGRNGSGKSTLLRVVAGLLKPEKGTVIF 61
Query: 70 NGHDITQSGIFHQYKLQL-NWLSLKDAVKEKFTVLDNVQ-WFEVLEGKQGNS----LPAL 123
+ + Q+ ++ ++L ++A+K + TV +N+ W L ++ A
Sbjct: 62 GDKESPEG----QHPGEVSHYLGHRNAMKNELTVAENLDFWRHFLRSTCSSADLSVEDAT 117
Query: 124 ELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAE 183
E +GL ++ LS GQ++R A+LL RP+W+LDEP+ ALD RL +I
Sbjct: 118 EAVGLSGISHLPFGYLSAGQQRRFAFAKLLVAHRPVWILDEPTAALDASADRLFAGLIEA 177
Query: 184 HRKKGGIVIVATHLPIQIEDAMNLRL 209
H KGGIV+ ATH P+ +++A L++
Sbjct: 178 HLAKGGIVLAATHQPLGLKNAQELKM 203
>sp|Q2K396|CCMA_RHIEC Cytochrome c biogenesis ATP-binding export protein CcmA
OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=ccmA
PE=3 SV=2
Length = 215
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 115/206 (55%), Gaps = 10/206 (4%)
Query: 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW 69
L +N++ R I +++ + G ALVLTG NGSGKST LR++AG KP G +++
Sbjct: 2 HLTAENLAARRGEDMIFINISFYLAAGEALVLTGRNGSGKSTLLRVVAGLLKPEKGTVIF 61
Query: 70 NGHDITQSGIFHQYKLQL-NWLSLKDAVKEKFTVLDNVQ-WFEVLEGKQGNS----LPAL 123
+ + Q+ ++ ++L ++A+K + TV +N+ W L ++ A
Sbjct: 62 GDKESPEG----QHPGEVSHYLGHRNAMKNELTVAENLDFWRHFLRSTCSSADLSVEDAT 117
Query: 124 ELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAE 183
E +GL ++ LS GQ++R A+LL RP+W+LDEP+ ALD RL +I
Sbjct: 118 EAVGLSGISHLPFGYLSAGQQRRFAFAKLLVAHRPVWILDEPTAALDASADRLFAGLIEA 177
Query: 184 HRKKGGIVIVATHLPIQIEDAMNLRL 209
H KGGIV+ ATH P+ +++A L++
Sbjct: 178 HLAKGGIVLAATHQPLGLKNAQELKM 203
>sp|Q48GL0|CCMA_PSE14 Cytochrome c biogenesis ATP-binding export protein CcmA
OS=Pseudomonas syringae pv. phaseolicola (strain 1448A /
Race 6) GN=ccmA PE=3 SV=2
Length = 213
Score = 118 bits (296), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 103/193 (53%), Gaps = 4/193 (2%)
Query: 6 PPLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAG 65
P P L ++C R+ + + ++++ + G L ++G NGSGK++ LR+L G +P+AG
Sbjct: 3 PAPPFLQATALTCERDGRMLFENLDLQVRTGDMLQVSGPNGSGKTSLLRLLCGLMQPTAG 62
Query: 66 EILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNS--LPAL 123
+L NG + L L W+ A+K+ T L+N+ W L AL
Sbjct: 63 HVLLNGQPAGRQPT--APGLNLLWVGHASALKDLLTPLENLSWLCALHHPADADAIFNAL 120
Query: 124 ELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAE 183
+ +GL LS GQ++R+ LARL P+WLLDEP ALD G+ LE +A
Sbjct: 121 DAVGLAGFEDVPCHTLSAGQQRRVALARLYLPGPPLWLLDEPFTALDRQGIAQLENHLAG 180
Query: 184 HRKKGGIVIVATH 196
H +KGG++I+ TH
Sbjct: 181 HCEKGGMIIMTTH 193
>sp|Q11CZ6|CCMA_MESSB Cytochrome c biogenesis ATP-binding export protein CcmA
OS=Mesorhizobium sp. (strain BNC1) GN=ccmA PE=3 SV=1
Length = 202
Score = 118 bits (296), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 110/201 (54%), Gaps = 5/201 (2%)
Query: 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW 69
RL +N+S R + + V+ ++ L++TG NG+GKST LR++AG + G + +
Sbjct: 2 RLAAENLSGERGGETVFSGVSFALGQSETLLVTGPNGAGKSTLLRIIAGLLPVAKGHVAF 61
Query: 70 NGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDN-VQWFEVLEGKQGNSLPALELMGL 128
+G IF ++L + +K ++ +N V W + L ++ + L ALE++GL
Sbjct: 62 SG----GGEIFPDAGAACHYLGHLNGMKPALSIEENLVFWRDFLGEERLSPLEALEIVGL 117
Query: 129 GRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKG 188
G +A LS GQR+R +ARLL RP+WLLDEP+ LD ++ H G
Sbjct: 118 GEIAHLPFGYLSTGQRRRTAIARLLVSYRPVWLLDEPTAGLDRASEAQFAEVMRAHLSAG 177
Query: 189 GIVIVATHLPIQIEDAMNLRL 209
GI++ ATHLP+ +E L++
Sbjct: 178 GIIVAATHLPLGLEGTQELKM 198
>sp|O21280|CCMA_RECAM Cytochrome c biogenesis ATP-binding export protein CcmA
OS=Reclinomonas americana GN=CCMA PE=3 SV=1
Length = 222
Score = 117 bits (294), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 119/202 (58%), Gaps = 9/202 (4%)
Query: 6 PPLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAG 65
+ L + N++ +R+ + I +++N S+ G ++ G+NGSGK+T L++++G S G
Sbjct: 4 TKIQNLTIHNITGIRSNKIIFQNINFSLEKGSLFIIQGSNGSGKTTLLKIISGLLPKSQG 63
Query: 66 EILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDN-VQWFEVLEGKQGNSL---- 120
+I+ N + I+++ + K L ++ + KE T+LD + W + G Q S
Sbjct: 64 DIIINNNFISENYL----KDSLFYMDSTPSFKEDITLLDYLIYWNTLYNGLQNISYEYIR 119
Query: 121 PALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYI 180
+L +GL L +K LS+GQ+KRL +++LL ++ +W+LDEP + LD +++ I
Sbjct: 120 TSLFQLGLSHLQNKKISTLSLGQKKRLLISKLLLTNKQLWILDEPLIGLDKYWIKIFSTI 179
Query: 181 IAEHRKKGGIVIVATHLPIQIE 202
+ +H K+GGI+I++TH + I+
Sbjct: 180 LLKHCKRGGIIIMSTHTDLNIK 201
>sp|Q3SVV2|CCMA_NITWN Cytochrome c biogenesis ATP-binding export protein CcmA
OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391)
GN=ccmA PE=3 SV=1
Length = 200
Score = 117 bits (294), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 112/201 (55%), Gaps = 7/201 (3%)
Query: 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW 69
RL + C+R +++ ++++ G A+ +TG NG+GK++ LR+LAG + G I
Sbjct: 2 RLSGNGLRCVRGGREVFSGLDVAAESGHAVAITGPNGAGKTSLLRLLAGLLAIADGSISL 61
Query: 70 NGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQ-WFEVLEGKQGNSLPALELMGL 128
G D + Q ++L +DA+K TV +N+ W + L G + AL +GL
Sbjct: 62 EGGDPELT-----LPEQAHYLGHRDALKPALTVSENLSFWRDFLGGGKSGESDALAAVGL 116
Query: 129 GRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKG 188
+A A LS GQR+RL +ARLLA+ RP+WLLDEP+ ALD G I+ H G
Sbjct: 117 DHVAHLPAAYLSAGQRRRLSIARLLAVKRPVWLLDEPTSALDVTGQAAFAAIMTGHLAGG 176
Query: 189 GIVIVATHLPIQIEDAMNLRL 209
GI++ ATH P+ I A LR+
Sbjct: 177 GIILAATHTPLGIA-ARELRI 196
>sp|Q8G358|CCMA_BRUSU Cytochrome c biogenesis ATP-binding export protein CcmA OS=Brucella
suis biovar 1 (strain 1330) GN=ccmA PE=3 SV=1
Length = 215
Score = 117 bits (293), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 116/201 (57%), Gaps = 12/201 (5%)
Query: 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW 69
RL +N++ R + I H++ +I G ALV+TG NGSGKST LR++ G P AGE+
Sbjct: 2 RLEAENLAGERGGETIFSHLSFTIGTGQALVVTGPNGSGKSTLLRIICGLLAPEAGEV-- 59
Query: 70 NGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQ----GNSLPALEL 125
+T+ + ++L ++A+K +V +N+ +++ G + G +L A++L
Sbjct: 60 ---KLTEGTQIVPVRAACHYLGHQNAMKPALSVRENLLFWQKFNGGEALDIGAALEAVDL 116
Query: 126 MGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHR 185
G+ L LS GQ++R+ +A+LL RP+W++DEP+ LD ++ EH
Sbjct: 117 AGVEHL---PFGYLSTGQKRRVSIAKLLVSHRPLWIVDEPTAGLDKASEARFAELMREHM 173
Query: 186 KKGGIVIVATHLPIQIEDAMN 206
++ G++I ATH+P+ ++ A++
Sbjct: 174 RQDGMIIAATHIPLGLDGAIS 194
>sp|Q57FS7|CCMA_BRUAB Cytochrome c biogenesis ATP-binding export protein CcmA OS=Brucella
abortus biovar 1 (strain 9-941) GN=ccmA PE=3 SV=1
Length = 215
Score = 117 bits (293), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 116/201 (57%), Gaps = 12/201 (5%)
Query: 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW 69
RL +N++ R + I H++ +I G ALV+TG NGSGKST LR++ G P AGE+
Sbjct: 2 RLEAENLAGERGGETIFSHLSFTIGTGQALVVTGPNGSGKSTLLRIICGLLAPEAGEV-- 59
Query: 70 NGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQ----GNSLPALEL 125
+T+ + ++L ++A+K +V +N+ +++ G + G +L A++L
Sbjct: 60 ---KLTEGTQIVPVRAACHYLGHQNAMKPALSVRENLLFWQKFNGGEALDIGAALEAVDL 116
Query: 126 MGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHR 185
G+ L LS GQ++R+ +A+LL RP+W++DEP+ LD ++ EH
Sbjct: 117 AGVEHL---PFGYLSTGQKRRVSIAKLLVSHRPLWIVDEPTAGLDKASEARFAELMREHM 173
Query: 186 KKGGIVIVATHLPIQIEDAMN 206
++ G++I ATH+P+ ++ A++
Sbjct: 174 RQDGMIIAATHIPLGLDGAIS 194
>sp|Q2YNU0|CCMA_BRUA2 Cytochrome c biogenesis ATP-binding export protein CcmA OS=Brucella
abortus (strain 2308) GN=ccmA PE=3 SV=1
Length = 215
Score = 117 bits (293), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 116/201 (57%), Gaps = 12/201 (5%)
Query: 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW 69
RL +N++ R + I H++ +I G ALV+TG NGSGKST LR++ G P AGE+
Sbjct: 2 RLEAENLAGERGGETIFSHLSFTIGTGQALVVTGPNGSGKSTLLRIICGLLAPEAGEV-- 59
Query: 70 NGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQ----GNSLPALEL 125
+T+ + ++L ++A+K +V +N+ +++ G + G +L A++L
Sbjct: 60 ---KLTEGTQIVPVRAACHYLGHQNAMKPALSVRENLLFWQKFNGGEALDIGAALEAVDL 116
Query: 126 MGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHR 185
G+ L LS GQ++R+ +A+LL RP+W++DEP+ LD ++ EH
Sbjct: 117 AGVEHL---PFGYLSTGQKRRVSIAKLLVSHRPLWIVDEPTAGLDKASEARFAELMREHM 173
Query: 186 KKGGIVIVATHLPIQIEDAMN 206
++ G++I ATH+P+ ++ A++
Sbjct: 174 RQDGMIIAATHIPLGLDGAIS 194
>sp|Q8YEM5|CCMA_BRUME Cytochrome c biogenesis ATP-binding export protein CcmA OS=Brucella
melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC
10094) GN=ccmA PE=3 SV=2
Length = 215
Score = 117 bits (293), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 116/201 (57%), Gaps = 12/201 (5%)
Query: 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW 69
RL +N++ R + I H++ +I G ALV+TG NGSGKST LR++ G P AGE+
Sbjct: 2 RLEAENLAGERGGETIFSHLSFTIGTGQALVVTGPNGSGKSTLLRIICGLLAPEAGEV-- 59
Query: 70 NGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQ----GNSLPALEL 125
+T+ + ++L ++A+K +V +N+ +++ G + G +L A++L
Sbjct: 60 ---KLTEGTQIVPVRAACHYLGHQNAMKPALSVRENLLFWQKFNGGEALDIGAALEAVDL 116
Query: 126 MGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHR 185
G+ L LS GQ++R+ +A+LL RP+W++DEP+ LD ++ EH
Sbjct: 117 AGVEHL---PFGYLSTGQKRRVSIAKLLVSHRPLWIVDEPTAGLDKASEARFAELMREHM 173
Query: 186 KKGGIVIVATHLPIQIEDAMN 206
++ G++I ATH+P+ ++ A++
Sbjct: 174 RQDGMIIAATHIPLGLDGAIS 194
>sp|Q82WC8|CCMA_NITEU Cytochrome c biogenesis ATP-binding export protein CcmA
OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC
14298) GN=ccmA PE=3 SV=1
Length = 213
Score = 117 bits (293), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 116/199 (58%), Gaps = 5/199 (2%)
Query: 1 MTLRKPPLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS 60
MT P+ L +N+ C+R ++ +++ S++ G + + G NGSGK++ LR+L G S
Sbjct: 1 MTTGPSPIEMLTARNLECIRGEHRLFSNLSFSVNPGELMFVGGPNGSGKTSLLRLLCGLS 60
Query: 61 KPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSL 120
P GEI WNG DI + G+ Y+ + +L +K+ T ++N++ L G + +
Sbjct: 61 LPDDGEIYWNGTDIRKLGV--DYRDVMTYLGHLGGIKDDLTAIENLRISCALAGCEIDED 118
Query: 121 PALELMG-LGRLAKE--KARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLL 177
A + +G +G +E AR+LS GQR+R+ LARLL +W+LDEP ALD V L+
Sbjct: 119 QAADALGQIGLAGREMLPARVLSQGQRRRVALARLLVTRTKLWILDEPLTALDVAAVELI 178
Query: 178 EYIIAEHRKKGGIVIVATH 196
+ I+ + KGG+VI+ TH
Sbjct: 179 KGILEHNLAKGGMVIMTTH 197
>sp|Q8UC12|CCMA_AGRT5 Cytochrome c biogenesis ATP-binding export protein CcmA
OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970)
GN=ccmA PE=3 SV=1
Length = 213
Score = 117 bits (292), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 113/208 (54%), Gaps = 16/208 (7%)
Query: 11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN 70
L +N+ R I +++ + DG ALVLTG NGSGKST LR +AG +P G +
Sbjct: 3 LTAENLGVRRGEDFIFMNISFKLSDGEALVLTGRNGSGKSTLLRTVAGLLRPEQGRVKIA 62
Query: 71 GHDITQ----SGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQ-WFEVLEGKQGNSLPALE- 124
G I S FH +L ++A+K + TV +N++ W + L G++ A++
Sbjct: 63 GEGIDAEMRPSEAFH-------YLGHRNAMKTELTVAENLRFWKDFLGDFPGSTGVAIDE 115
Query: 125 ---LMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYII 181
++GL + LS GQ++R +A+LL RP+W+LDEP+ ALD + ++
Sbjct: 116 AAAIVGLAGITHLPFGYLSAGQQRRFAMAKLLVAWRPVWILDEPTAALDRAADAMFTDLV 175
Query: 182 AEHRKKGGIVIVATHLPIQIEDAMNLRL 209
H KGGIV+ ATH P+ +E A L++
Sbjct: 176 KSHLGKGGIVLAATHQPLGLEKAQELQM 203
>sp|Q5LR15|CCMA_RUEPO Cytochrome c biogenesis ATP-binding export protein CcmA OS=Ruegeria
pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3)
GN=ccmA PE=3 SV=1
Length = 204
Score = 116 bits (291), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 111/212 (52%), Gaps = 17/212 (8%)
Query: 11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN 70
L + +++ R +L ++ ++ G AL+L G NG+GK+T LR LAG P AG I
Sbjct: 3 LTVTDLAIARGGIPVLEGLSFTLTPGRALILRGPNGAGKTTLLRTLAGLQPPLAGRI--- 59
Query: 71 GHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQ-WFEVLEGKQGNSLPALELMGLG 129
+ ++ + D +K +V +N+ W V G+ + PALE LG
Sbjct: 60 ----------EGAEDKIAYAGHSDGLKPTLSVTENLLFWAAVFGGR--DITPALEGFALG 107
Query: 130 RLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGG 189
LA A LS GQ++RL LARLL RPIW+LDEP+V+LD D V + + H +GG
Sbjct: 108 DLADRHAGNLSAGQKRRLGLARLLVTGRPIWMLDEPTVSLDRDAVAMFADTVRAHLGQGG 167
Query: 190 IVIVATHLPIQIEDAMNLRLPPRFPRRMTLVD 221
++ATH+ + + DA L + P R L D
Sbjct: 168 SALIATHIDLGL-DAEVLDVGPYRARPAPLDD 198
>sp|Q6D606|CCMA_ERWCT Cytochrome c biogenesis ATP-binding export protein CcmA OS=Erwinia
carotovora subsp. atroseptica (strain SCRI 1043 / ATCC
BAA-672) GN=ccmA PE=3 SV=1
Length = 206
Score = 116 bits (291), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 101/187 (54%), Gaps = 3/187 (1%)
Query: 14 KNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHD 73
++V C+R+ + ++ + G + + G NG GK++ LRML+G + P +G++ W G
Sbjct: 5 RDVVCIRDEHVLFSALSFTASSGEMVQIAGANGVGKTSLLRMLSGLATPESGDVCWQGQR 64
Query: 74 ITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAK 133
I + I + QL WL + +K T +N+++F + Q AL +GL
Sbjct: 65 INR--IREHFNQQLLWLGHQPGIKSVLTGEENLRFF-YPQQHQDAHWQALAAVGLAGYED 121
Query: 134 EKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIV 193
LS GQ++R+ LARL D P+W+LDEP ALD GV +L + H GGI+I+
Sbjct: 122 VPVARLSAGQQRRVALARLWLTDVPLWILDEPLTALDVAGVEMLTQRMEHHIAHGGIIIL 181
Query: 194 ATHLPIQ 200
TH P++
Sbjct: 182 TTHQPLR 188
>sp|P45032|CCMA_HAEIN Cytochrome c biogenesis ATP-binding export protein CcmA
OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121
/ KW20 / Rd) GN=ccmA PE=3 SV=1
Length = 212
Score = 116 bits (290), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 111/194 (57%), Gaps = 7/194 (3%)
Query: 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW 69
+L L+N+SC R + + R + + G + + G NG GK++ LR+LAG +P GE+ W
Sbjct: 6 KLSLQNLSCQRGERVLFRALTCDFNSGDFVQIEGHNGIGKTSLLRILAGLVRPLEGEVRW 65
Query: 70 NGHDIT-QSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELM-G 127
+ I+ Q +HQ L L LS VK + T +N+Q+++ + + N+ +L+
Sbjct: 66 DSEAISKQREQYHQNLLYLGHLS---GVKPELTAWENLQFYQRISQAEQNTDMLWDLLEK 122
Query: 128 LGRLAKEK--ARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHR 185
+G L +E A LS GQ+KR+ L RL P+W+LDEP A+D GV +L + EH
Sbjct: 123 VGLLGREDLPAAQLSAGQQKRIALGRLWLSQAPLWILDEPFTAIDKKGVEILTALFDEHA 182
Query: 186 KKGGIVIVATHLPI 199
++GGIV++ +H +
Sbjct: 183 QRGGIVLLTSHQEV 196
>sp|Q21QL9|CCMA_RHOFD Cytochrome c biogenesis ATP-binding export protein CcmA
OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC
BAA-621 / T118) GN=ccmA PE=3 SV=1
Length = 210
Score = 115 bits (288), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 105/197 (53%), Gaps = 5/197 (2%)
Query: 8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEI 67
+P L + C R +Q+ ++++ + G L + G NG GK++ LRM+ G + +GEI
Sbjct: 4 VPTLSFSKLGCSRGGRQLFQNIDCVLESGHWLYVAGANGVGKTSLLRMVCGLAPIESGEI 63
Query: 68 LWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG---KQGNSLPALE 124
WNG I Y+ L +L +A++E TV +N+ + L G + L
Sbjct: 64 FWNGTPIHAQA--DAYRQDLCYLGHLNALQESMTVHENLAFTAALGGMAPDMAQTQSVLA 121
Query: 125 LMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEH 184
G+ ++ R LS GQ++R+ L+RL +W+LDEP VA+D GVR+L +IA H
Sbjct: 122 HFGVAGRDRQLVRHLSQGQKRRVALSRLALSQARLWVLDEPFVAMDEAGVRMLADLIAAH 181
Query: 185 RKKGGIVIVATHLPIQI 201
+GG+ ++ +H + I
Sbjct: 182 LTQGGLAVLTSHQQVDI 198
>sp|Q0BV49|CCMA_GRABC Cytochrome c biogenesis ATP-binding export protein CcmA
OS=Granulibacter bethesdensis (strain ATCC BAA-1260 /
CGDNIH1) GN=ccmA PE=3 SV=1
Length = 258
Score = 115 bits (287), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 118/225 (52%), Gaps = 17/225 (7%)
Query: 1 MTLRKPPLPRLLLKNVSCMRNAQQILRHVNISI--------HDGG--ALVLTGTNGSGKS 50
+ R P L + ++ R + + R ++ S+ +G A+ L G NGSGKS
Sbjct: 12 ICTRDGPGGMLTARGLAVFRAERLVFRDLDFSLVPATLRPAGEGAPDAVTLIGPNGSGKS 71
Query: 51 TFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFE 110
T LR+LAGF +P+ G + W + + ++ +DAVK T +N+ F+
Sbjct: 72 TLLRLLAGFVRPAVGTVWWQEEPLPADPA--DRARIVTYIGHQDAVKPGLTAAENLL-FD 128
Query: 111 VLEGKQGNS----LPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPS 166
+G L ALE +GL L+ RMLS GQ++RL L+RL+ + P+WLLDEP+
Sbjct: 129 ASWHPRGRRREAILNALEAVGLSALSALPGRMLSAGQKRRLALSRLMLRETPVWLLDEPT 188
Query: 167 VALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNLRLPP 211
+ LD + L ++ HR +GG+V+ ATH+P+ + A L L P
Sbjct: 189 LGLDDASIALFGDMLRAHRARGGVVMAATHVPLPLPGAGVLSLHP 233
>sp|Q4QLJ9|CCMA_HAEI8 Cytochrome c biogenesis ATP-binding export protein CcmA
OS=Haemophilus influenzae (strain 86-028NP) GN=ccmA PE=3
SV=1
Length = 212
Score = 115 bits (287), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 110/193 (56%), Gaps = 5/193 (2%)
Query: 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW 69
+L L+N+SC R + + R + + G + + G NG GK++ LR+LAG ++P GE+ W
Sbjct: 6 KLSLQNLSCQRGERVLFRALTCDFNSGDFVQIEGHNGIGKTSLLRILAGLAQPLEGEVRW 65
Query: 70 NGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELM-GL 128
+ I++ QY L +L VK + T +N+Q+++ + + N+ +L+ +
Sbjct: 66 DAEAISKQR--EQYHQNLLYLGHLLGVKPELTAWENLQFYQRISQAEQNTDMLWDLLEKV 123
Query: 129 GRLAKEK--ARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK 186
G L +E A LS GQ+KR+ L RL P+W+LDEP A+D GV +L + EH +
Sbjct: 124 GLLGREDLPAAQLSAGQQKRIALGRLWLSQAPLWILDEPFTAIDKKGVEILTALFDEHAQ 183
Query: 187 KGGIVIVATHLPI 199
+GGIV++ +H +
Sbjct: 184 RGGIVLLTSHQEV 196
>sp|Q28NZ8|CCMA_JANSC Cytochrome c biogenesis ATP-binding export protein CcmA
OS=Jannaschia sp. (strain CCS1) GN=ccmA PE=3 SV=1
Length = 211
Score = 114 bits (286), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 111/211 (52%), Gaps = 14/211 (6%)
Query: 11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN 70
L + +++C R Q+L V+ S+ G AL+L G NG+GK+T LR LAG + P AG I
Sbjct: 3 LTVTDLACARGPAQVLSGVSFSVSAGEALILRGPNGAGKTTLLRTLAGLTPPLAGTI--- 59
Query: 71 GHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGR 130
+ + + + D +K + TV +N+ ++ + G + PA+ L
Sbjct: 60 ----------SHAEDAIAYAAHADGLKAQLTVAENLTFWATIFGTL-DIAPAIAAFALAP 108
Query: 131 LAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGI 190
LA A LS GQ++RL LARLL RPIW LDEP+V+LD + + H + GG
Sbjct: 109 LADRPAGELSAGQKRRLSLARLLVTGRPIWALDEPTVSLDTENTARFAAAVEAHLRAGGA 168
Query: 191 VIVATHLPIQIEDAMNLRLPPRFPRRMTLVD 221
I+ATH+ + + +A +L + P + + D
Sbjct: 169 AIIATHIDLGLPNARSLDITPFIAKGLPASD 199
>sp|Q487I2|CCMA_COLP3 Cytochrome c biogenesis ATP-binding export protein CcmA
OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681)
GN=ccmA PE=3 SV=1
Length = 219
Score = 114 bits (285), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 121/225 (53%), Gaps = 12/225 (5%)
Query: 4 RKPPLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPS 63
+K P + N++C+R + + +++ I+ G + + G NGSGK++ LR+L+G S+P
Sbjct: 3 KKNSTPLISAVNLTCIREERLLFDELSLQINAGDIVQVEGPNGSGKTSLLRILSGLSQPY 62
Query: 64 AGEILWNGHDITQS-GIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG-KQGNSLP 121
G+IL+ I+ FHQ L LS VK + T +N+ + L G K SL
Sbjct: 63 DGQILYREQLISHCREEFHQNLLYFGHLS---GVKGEMTAEENLDFNLALHGNKTQESLS 119
Query: 122 ALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYII 181
L + L + A LS GQ +R+ LARL + PIW+LDEP A+D GV LE +
Sbjct: 120 YLAKVNLSGFEECLASHLSAGQHRRIALARLYQSNVPIWILDEPFTAIDKQGVASLERLF 179
Query: 182 AEHRKKGGIVIVATHLPIQIEDAMNLRLPPRFPRRMTLVDMLDRA 226
+ H ++GG VI+ TH +D ++++ P +++TL D A
Sbjct: 180 SLHAERGGCVILTTH-----QDLISIK--PEQIKKITLDYSYDSA 217
>sp|Q0A808|CCMA_ALHEH Cytochrome c biogenesis ATP-binding export protein CcmA
OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=ccmA
PE=3 SV=1
Length = 236
Score = 114 bits (285), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 102/197 (51%), Gaps = 6/197 (3%)
Query: 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEIL 68
P L + R + + R + + GG L + G NGSGK+T LR LAG S+P G IL
Sbjct: 12 PALEATGLQVARGGRPLFRGLGFRLARGGLLCVRGANGSGKTTLLRTLAGLSRPHRGRIL 71
Query: 69 WNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNS---LPALEL 125
G I Q+ H+ LQ + +D ++ TVL+N+QW L + + AL
Sbjct: 72 RAGRCIRQAANDHRGTLQ--YRGHRDGLRGALTVLENLQWQAALYHHRPDREAVRTALAG 129
Query: 126 MGLGRLAKEKARMLSMGQRKRLQLARLLAIDRP-IWLLDEPSVALDYDGVRLLEYIIAEH 184
MG+ R A LS GQR+R+ LA L R +WLLDEP ALD +G ++A H
Sbjct: 130 MGMARHLDTLASQLSQGQRRRVVLASLALFPRCRLWLLDEPQAALDVEGAERFHALLARH 189
Query: 185 RKKGGIVIVATHLPIQI 201
++GG V+ +H ++I
Sbjct: 190 CQEGGAVVACSHQHLRI 206
>sp|Q8XE58|CCMA_ECO57 Cytochrome c biogenesis ATP-binding export protein CcmA
OS=Escherichia coli O157:H7 GN=ccmA PE=3 SV=2
Length = 207
Score = 114 bits (285), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 112/194 (57%), Gaps = 3/194 (1%)
Query: 11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN 70
L ++ + C R+ + + ++ +++ G + +TG+NG+GK+T LR+L G S+P AGE+LW
Sbjct: 4 LEVRELLCERDERTLFSGLSFTLNAGEWVQITGSNGAGKTTLLRLLTGLSRPDAGEVLWQ 63
Query: 71 GHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGR 130
G + Q + Y L W+ + +K + T L+N+ ++ +G L AL GL
Sbjct: 64 GQPLHQ--VRDSYHQNLLWIGHQPGIKTRLTALENLHFYH-RDGDTAQCLEALAQAGLAG 120
Query: 131 LAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGI 190
LS GQ++R+ LARL +W+LDEP A+D +GV L +A+H ++GGI
Sbjct: 121 FEDIPVNQLSAGQQRRVALARLWLTRATLWILDEPFTAIDVNGVDRLTQRMAQHTEQGGI 180
Query: 191 VIVATHLPIQIEDA 204
VI+ TH P+ + ++
Sbjct: 181 VILTTHQPLNVAES 194
>sp|Q31Z24|CCMA_SHIBS Cytochrome c biogenesis ATP-binding export protein CcmA OS=Shigella
boydii serotype 4 (strain Sb227) GN=ccmA PE=3 SV=2
Length = 207
Score = 113 bits (283), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 108/187 (57%), Gaps = 3/187 (1%)
Query: 18 CMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQS 77
C R+ + + ++ +++ G + +TG+NG+GK+T LR+L G S+P AGE+LW G + Q
Sbjct: 11 CERDERTLFSGLSFTLNAGEWVQITGSNGAGKTTLLRLLTGLSRPDAGEVLWQGQPLHQ- 69
Query: 78 GIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKAR 137
+ Y L W+ + +K + T L+N+ ++ +G L AL GL
Sbjct: 70 -VRDSYHQNLLWIGHQPGIKTRLTALENLHFYH-RDGDTAQCLEALAQAGLAGFEDIPVN 127
Query: 138 MLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHL 197
LS GQ++R+ LARL +W+LDEP A+D +GV L +A+H ++GGIVI+ TH
Sbjct: 128 QLSAGQQRRVALARLWLTRATLWILDEPFTAIDVNGVDRLTQRMAQHTEQGGIVILTTHQ 187
Query: 198 PIQIEDA 204
P+ + ++
Sbjct: 188 PLNVAES 194
>sp|P33931|CCMA_ECOLI Cytochrome c biogenesis ATP-binding export protein CcmA
OS=Escherichia coli (strain K12) GN=ccmA PE=1 SV=2
Length = 207
Score = 113 bits (283), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 108/187 (57%), Gaps = 3/187 (1%)
Query: 18 CMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQS 77
C R+ + + ++ +++ G + +TG+NG+GK+T LR+L G S+P AGE+LW G + Q
Sbjct: 11 CERDERTLFSGLSFTLNAGEWVQITGSNGAGKTTLLRLLTGLSRPDAGEVLWQGQPLHQ- 69
Query: 78 GIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKAR 137
+ Y L W+ + +K + T L+N+ ++ +G L AL GL
Sbjct: 70 -VRDSYHQNLLWIGHQPGIKTRLTALENLHFYH-RDGDTAQCLEALAQAGLAGFEDIPVN 127
Query: 138 MLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHL 197
LS GQ++R+ LARL +W+LDEP A+D +GV L +A+H ++GGIVI+ TH
Sbjct: 128 QLSAGQQRRVALARLWLTRATLWILDEPFTAIDVNGVDRLTQRMAQHTEQGGIVILTTHQ 187
Query: 198 PIQIEDA 204
P+ + ++
Sbjct: 188 PLNVAES 194
>sp|Q0TFP1|CCMA_ECOL5 Cytochrome c biogenesis ATP-binding export protein CcmA
OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC)
GN=ccmA PE=3 SV=2
Length = 207
Score = 113 bits (283), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 108/187 (57%), Gaps = 3/187 (1%)
Query: 18 CMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQS 77
C R+ + + ++ +++ G + +TG+NG+GK+T LR+L G S+P AGE+LW G + Q
Sbjct: 11 CERDERTLFSGLSFTLNAGEWVQITGSNGAGKTTLLRLLTGLSRPDAGEVLWQGQPLHQ- 69
Query: 78 GIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKAR 137
+ Y L W+ + +K + T L+N+ ++ +G L AL GL
Sbjct: 70 -VRDSYHQNLLWIGHQPGIKTRLTALENLHFYH-RDGDTAQCLEALAQAGLAGFEDIPVN 127
Query: 138 MLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHL 197
LS GQ++R+ LARL +W+LDEP A+D +GV L +A+H ++GGIVI+ TH
Sbjct: 128 QLSAGQQRRVALARLWLTRATLWILDEPFTAIDVNGVDRLTQRMAQHTEQGGIVILTTHQ 187
Query: 198 PIQIEDA 204
P+ + ++
Sbjct: 188 PLNVAES 194
>sp|Q1R9L8|CCMA_ECOUT Cytochrome c biogenesis ATP-binding export protein CcmA
OS=Escherichia coli (strain UTI89 / UPEC) GN=ccmA PE=3
SV=1
Length = 207
Score = 113 bits (283), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 108/187 (57%), Gaps = 3/187 (1%)
Query: 18 CMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQS 77
C R+ + + ++ +++ G + +TG+NG+GK+T LR+L G S+P AGE+LW G + Q
Sbjct: 11 CERDERTLFSGLSFTLNAGEWVQITGSNGAGKTTLLRLLTGLSRPDAGEVLWQGQPLHQ- 69
Query: 78 GIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKAR 137
+ Y L W+ + +K + T L+N+ ++ +G L AL GL
Sbjct: 70 -VRDSYHQNLLWIGHQPGIKTRLTALENLHFYH-RDGDTAQCLEALAQAGLAGFEDIPVN 127
Query: 138 MLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHL 197
LS GQ++R+ LARL +W+LDEP A+D +GV L +A+H ++GGIVI+ TH
Sbjct: 128 QLSAGQQRRVALARLWLTRATLWILDEPFTAIDVNGVDRLTQRMAQHTEQGGIVILTTHQ 187
Query: 198 PIQIEDA 204
P+ + ++
Sbjct: 188 PLNVAES 194
>sp|Q3Z006|CCMA_SHISS Cytochrome c biogenesis ATP-binding export protein CcmA OS=Shigella
sonnei (strain Ss046) GN=ccmA PE=3 SV=2
Length = 207
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 108/187 (57%), Gaps = 3/187 (1%)
Query: 18 CMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQS 77
C R+ + + ++ +++ G + +TG+NG+GK+T LR+L G S+P AGE+LW G + Q
Sbjct: 11 CERDERTLFSGLSFTLNAGEWVQITGSNGAGKTTLLRLLTGLSRPDAGEVLWQGQPLHQ- 69
Query: 78 GIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKAR 137
+ Y L W+ + +K + T L+N+ ++ +G L AL GL
Sbjct: 70 -VRDSYHQNLLWIGHQPGIKTRLTALENLHFYH-RDGDTAQCLEALAQAGLAGFDDIPVN 127
Query: 138 MLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHL 197
LS GQ++R+ LARL +W+LDEP A+D +GV L +A+H ++GGIVI+ TH
Sbjct: 128 QLSAGQQRRVALARLWLTRATLWILDEPFTAIDVNGVDRLTQRMAQHTEQGGIVILTTHQ 187
Query: 198 PIQIEDA 204
P+ + ++
Sbjct: 188 PLNVAES 194
>sp|Q83KD5|CCMA_SHIFL Cytochrome c biogenesis ATP-binding export protein CcmA OS=Shigella
flexneri GN=ccmA PE=3 SV=1
Length = 207
Score = 113 bits (282), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 108/187 (57%), Gaps = 3/187 (1%)
Query: 18 CMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQS 77
C R+ + + ++ +++ G + +TG+NG+GK+T LR+L G S+P AGE+LW G + Q
Sbjct: 11 CERDERTLFSGLSFTLNAGEWVQITGSNGAGKTTLLRLLTGLSRPDAGEVLWQGQPLHQ- 69
Query: 78 GIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKAR 137
+ Y L W+ + +K + T L+N+ ++ +G L AL GL
Sbjct: 70 -VRDSYHQTLLWIGHQPGIKTRLTALENLHFYH-RDGDAAQCLEALAQAGLAGFEDIPVN 127
Query: 138 MLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHL 197
LS GQ++R+ LARL +W+LDEP A+D +GV L +A+H ++GGIVI+ TH
Sbjct: 128 QLSAGQQRRVALARLWLTRATLWILDEPFTAIDVNGVDRLTQRMAQHTEQGGIVILTTHQ 187
Query: 198 PIQIEDA 204
P+ + ++
Sbjct: 188 PLNVAES 194
>sp|Q0BWF7|CCMA_HYPNA Cytochrome c biogenesis ATP-binding export protein CcmA
OS=Hyphomonas neptunium (strain ATCC 15444) GN=ccmA PE=3
SV=1
Length = 193
Score = 113 bits (282), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 106/206 (51%), Gaps = 20/206 (9%)
Query: 1 MTLRKPPLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS 60
MT+ PL L ++ +R + + R + +++ G A+VL G NG+GK+T LRMLAG +
Sbjct: 1 MTVSTAPL--LSASGLAILRGERVLFRGIGLTLQPGEAIVLRGANGAGKTTLLRMLAGLT 58
Query: 61 KPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSL 120
+P AGEI + H W+ K+ +K + T ++ + G +
Sbjct: 59 RPEAGEI-------ARPAAHH-------WIGHKEGIKPQETPRIHLALWAKAWGSSASIA 104
Query: 121 PALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYI 180
L+ + L R A R LS GQR+R ARLL RP+WLLDEP ALD G +L+ +
Sbjct: 105 DILDQLALTRAADVPGRYLSAGQRRRTAFARLLLEARPLWLLDEPYTALDAAGKTMLDQV 164
Query: 181 IAEHRKKGGIVIVATH----LPIQIE 202
I+ H + GG +I + H P+ E
Sbjct: 165 ISGHLRTGGAIIASMHDAAGFPVTAE 190
>sp|Q1LFZ8|CCMA2_RALME Cytochrome c biogenesis ATP-binding export protein CcmA 2
OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 /
DSM 2839) GN=ccmA2 PE=3 SV=1
Length = 211
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 103/195 (52%), Gaps = 5/195 (2%)
Query: 14 KNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHD 73
+ + R I R + IS+ G L + G NG+GK++ LR+L+ P+ G++ W G
Sbjct: 9 RELGVRRGHCAIFRGLGISLAPGDLLQVMGPNGAGKTSLLRVLSSLMPPAEGDLYWRGRA 68
Query: 74 ITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLP---ALELMGLGR 130
+ Y Q+ +L + + + +N+Q+ + G+Q ++ AL GL R
Sbjct: 69 VRAGDP--DYLAQVAYLGHVNGIYPDLSAFENLQFAARMAGQQPDADAMHHALARFGLDR 126
Query: 131 LAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGI 190
+A AR LS GQR+R+ L+RL R +WLLDEP +LD ++AEH ++GGI
Sbjct: 127 VADAPARTLSQGQRRRVALSRLALTPRALWLLDEPLTSLDDASTDCFHTLLAEHLQRGGI 186
Query: 191 VIVATHLPIQIEDAM 205
+VATH + E A+
Sbjct: 187 AVVATHQRLPAEGAV 201
>sp|Q2NSG3|CCMA_SODGM Cytochrome c biogenesis ATP-binding export protein CcmA OS=Sodalis
glossinidius (strain morsitans) GN=ccmA PE=3 SV=1
Length = 211
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 107/191 (56%), Gaps = 4/191 (2%)
Query: 11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN 70
+ + N++C+R+ +Q+ +N G + + G+NG+GK+ LR+LAG + P AGEI W
Sbjct: 1 MAIHNLACVRDERQLFSGLNEEFAPGDGVQIEGSNGAGKTLLLRILAGLTPPDAGEIRWR 60
Query: 71 GHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNS--LPALELMGL 128
+ Q Y +L ++ + A+K T +N+ +++ + G + + ALE +GL
Sbjct: 61 QRPLRQC--RSDYYRELVYIGHRAAIKPVLTPRENLTFYQGITGLRNDYAIYRALEQVGL 118
Query: 129 GRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKG 188
+A LS GQ++R+ LARL +W+LDEP A+D+ G + L + +H G
Sbjct: 119 LGYEDVRAAGLSAGQQQRIALARLWLTSASLWILDEPLTAIDHQGAQALVRLFEQHCATG 178
Query: 189 GIVIVATHLPI 199
G+VI+ TH P+
Sbjct: 179 GMVIMTTHQPL 189
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.139 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,733,317
Number of Sequences: 539616
Number of extensions: 3510691
Number of successful extensions: 21379
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 3675
Number of HSP's successfully gapped in prelim test: 269
Number of HSP's that attempted gapping in prelim test: 12642
Number of HSP's gapped (non-prelim): 5618
length of query: 229
length of database: 191,569,459
effective HSP length: 113
effective length of query: 116
effective length of database: 130,592,851
effective search space: 15148770716
effective search space used: 15148770716
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)