Query 027067
Match_columns 229
No_of_seqs 301 out of 1144
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 04:29:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027067.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027067hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 3.1E-62 6.6E-67 400.2 21.2 198 9-206 1-204 (240)
2 COG1116 TauB ABC-type nitrate/ 100.0 7.4E-58 1.6E-62 382.7 20.2 191 9-205 2-198 (248)
3 COG1125 OpuBA ABC-type proline 100.0 2.2E-57 4.8E-62 379.1 19.5 196 10-206 1-204 (309)
4 COG1135 AbcC ABC-type metal io 100.0 2E-56 4.3E-61 382.5 21.2 197 10-206 1-210 (339)
5 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.9E-56 4E-61 378.0 20.6 194 9-206 3-207 (254)
6 COG1136 SalX ABC-type antimicr 100.0 1.5E-55 3.3E-60 367.5 23.5 194 10-203 1-208 (226)
7 COG1120 FepC ABC-type cobalami 100.0 7.1E-56 1.5E-60 376.0 20.5 197 9-206 1-207 (258)
8 COG1127 Ttg2A ABC-type transpo 100.0 1.5E-55 3.3E-60 365.6 20.7 200 7-206 5-214 (263)
9 COG3842 PotA ABC-type spermidi 100.0 1.7E-55 3.8E-60 388.3 20.2 195 9-206 4-205 (352)
10 COG3839 MalK ABC-type sugar tr 100.0 3.8E-55 8.3E-60 384.3 21.2 194 9-205 2-201 (338)
11 COG2884 FtsE Predicted ATPase 100.0 1.5E-54 3.3E-59 348.3 17.5 195 10-204 1-203 (223)
12 COG1131 CcmA ABC-type multidru 100.0 1E-53 2.2E-58 373.0 23.2 196 9-206 3-205 (293)
13 TIGR00960 3a0501s02 Type II (G 100.0 3.5E-53 7.5E-58 353.8 23.7 197 10-206 1-206 (216)
14 PRK13537 nodulation ABC transp 100.0 4.3E-53 9.3E-58 371.3 24.8 197 8-206 5-206 (306)
15 COG1118 CysA ABC-type sulfate/ 100.0 7.3E-54 1.6E-58 366.1 16.9 194 10-206 2-206 (345)
16 cd03261 ABC_Org_Solvent_Resist 100.0 1.4E-52 3E-57 354.5 23.6 196 11-206 1-205 (235)
17 TIGR02314 ABC_MetN D-methionin 100.0 1.6E-52 3.4E-57 372.3 24.6 197 10-206 1-209 (343)
18 COG3638 ABC-type phosphate/pho 100.0 3.7E-53 8E-58 350.6 17.9 201 9-209 2-219 (258)
19 PRK11650 ugpC glycerol-3-phosp 100.0 2E-52 4.3E-57 373.7 23.8 194 10-206 3-203 (356)
20 TIGR02673 FtsE cell division A 100.0 3.4E-52 7.4E-57 347.2 23.5 198 10-207 1-206 (214)
21 COG1124 DppF ABC-type dipeptid 100.0 8.4E-53 1.8E-57 350.1 19.7 198 9-206 2-210 (252)
22 PRK13536 nodulation factor exp 100.0 3.7E-52 8E-57 369.9 25.1 196 9-206 40-240 (340)
23 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 3.2E-52 6.9E-57 348.3 22.8 195 11-206 1-208 (218)
24 cd03259 ABC_Carb_Solutes_like 100.0 2.5E-52 5.4E-57 348.0 21.5 194 11-207 1-200 (213)
25 cd03268 ABC_BcrA_bacitracin_re 100.0 3.5E-52 7.5E-57 345.9 22.1 193 11-206 1-194 (208)
26 PRK11432 fbpC ferric transport 100.0 4.4E-52 9.5E-57 370.7 24.2 196 8-206 4-205 (351)
27 cd03219 ABC_Mj1267_LivG_branch 100.0 4.7E-52 1E-56 351.2 23.1 197 11-207 1-212 (236)
28 COG4555 NatA ABC-type Na+ tran 100.0 2.6E-53 5.6E-58 344.0 14.5 196 10-207 1-202 (245)
29 cd03265 ABC_DrrA DrrA is the A 100.0 6.9E-52 1.5E-56 347.0 23.2 195 11-207 1-201 (220)
30 TIGR03265 PhnT2 putative 2-ami 100.0 6.8E-52 1.5E-56 369.8 24.4 195 9-206 3-203 (353)
31 cd03266 ABC_NatA_sodium_export 100.0 6.4E-52 1.4E-56 346.5 22.6 195 10-206 1-204 (218)
32 cd03226 ABC_cobalt_CbiO_domain 100.0 6E-52 1.3E-56 343.9 21.6 191 12-206 1-194 (205)
33 PRK09452 potA putrescine/sperm 100.0 1.2E-51 2.6E-56 370.6 25.2 197 7-206 11-213 (375)
34 COG1117 PstB ABC-type phosphat 100.0 3E-52 6.5E-57 340.5 19.3 197 8-206 5-216 (253)
35 TIGR01288 nodI ATP-binding ABC 100.0 1.4E-51 3E-56 361.2 24.7 196 9-206 3-203 (303)
36 cd03218 ABC_YhbG The ABC trans 100.0 1.5E-51 3.2E-56 347.3 23.2 196 11-206 1-201 (232)
37 cd03292 ABC_FtsE_transporter F 100.0 2.3E-51 5.1E-56 342.0 23.8 196 11-206 1-204 (214)
38 cd03296 ABC_CysA_sulfate_impor 100.0 2.2E-51 4.8E-56 348.2 23.5 194 10-206 2-205 (239)
39 cd03224 ABC_TM1139_LivF_branch 100.0 1.7E-51 3.7E-56 344.6 22.4 197 11-207 1-201 (222)
40 cd03293 ABC_NrtD_SsuB_transpor 100.0 2.2E-51 4.7E-56 344.0 23.1 191 11-207 1-201 (220)
41 cd03262 ABC_HisP_GlnQ_permease 100.0 2.3E-51 4.9E-56 341.8 23.0 197 11-207 1-204 (213)
42 cd03225 ABC_cobalt_CbiO_domain 100.0 2.2E-51 4.7E-56 341.6 22.6 194 12-206 1-202 (211)
43 PRK10908 cell division protein 100.0 4.6E-51 1E-55 342.5 24.5 197 10-206 1-205 (222)
44 PRK11629 lolD lipoprotein tran 100.0 4.8E-51 1E-55 344.9 24.7 196 9-204 4-212 (233)
45 cd03269 ABC_putative_ATPase Th 100.0 2.4E-51 5.2E-56 341.3 22.5 192 11-207 1-197 (210)
46 PRK11831 putative ABC transpor 100.0 4.6E-51 9.9E-56 352.3 25.0 201 6-206 3-212 (269)
47 TIGR03258 PhnT 2-aminoethylpho 100.0 3.1E-51 6.8E-56 366.5 24.7 194 10-206 5-207 (362)
48 cd03301 ABC_MalK_N The N-termi 100.0 3.3E-51 7.2E-56 341.0 22.7 193 11-206 1-199 (213)
49 PRK13538 cytochrome c biogenes 100.0 4E-51 8.6E-56 339.0 23.1 192 10-203 1-194 (204)
50 cd03256 ABC_PhnC_transporter A 100.0 2.5E-51 5.5E-56 347.5 22.2 197 11-207 1-214 (241)
51 cd03258 ABC_MetN_methionine_tr 100.0 3.8E-51 8.2E-56 345.2 23.0 199 10-208 1-211 (233)
52 PRK11153 metN DL-methionine tr 100.0 5.6E-51 1.2E-55 363.0 25.2 197 10-206 1-209 (343)
53 PRK10851 sulfate/thiosulfate t 100.0 3.6E-51 7.7E-56 365.2 24.0 194 10-206 2-205 (353)
54 PRK11000 maltose/maltodextrin 100.0 4.4E-51 9.4E-56 366.8 24.1 194 10-206 3-202 (369)
55 COG1122 CbiO ABC-type cobalt t 100.0 1.8E-51 3.9E-56 347.3 20.2 201 9-209 2-210 (235)
56 PRK09536 btuD corrinoid ABC tr 100.0 3.9E-51 8.4E-56 369.7 23.4 197 9-206 2-207 (402)
57 TIGR02315 ABC_phnC phosphonate 100.0 2.7E-51 5.8E-56 348.0 20.8 197 10-206 1-214 (243)
58 cd03235 ABC_Metallic_Cations A 100.0 1.6E-51 3.4E-56 343.1 18.9 190 12-207 1-201 (213)
59 TIGR02211 LolD_lipo_ex lipopro 100.0 1.1E-50 2.3E-55 339.7 23.9 196 10-206 1-209 (221)
60 TIGR03411 urea_trans_UrtD urea 100.0 8.6E-51 1.9E-55 344.8 23.6 197 9-206 1-210 (242)
61 PRK11300 livG leucine/isoleuci 100.0 8.2E-51 1.8E-55 347.4 23.7 198 9-206 4-222 (255)
62 TIGR03522 GldA_ABC_ATP gliding 100.0 8.5E-51 1.8E-55 355.9 24.2 194 10-206 2-200 (301)
63 PRK13540 cytochrome c biogenes 100.0 1E-50 2.2E-55 335.6 22.9 194 10-206 1-194 (200)
64 PRK10895 lipopolysaccharide AB 100.0 8.8E-51 1.9E-55 344.7 23.0 197 10-206 3-205 (241)
65 cd03231 ABC_CcmA_heme_exporter 100.0 7.7E-51 1.7E-55 336.7 21.9 198 11-211 1-198 (201)
66 PRK09493 glnQ glutamine ABC tr 100.0 1.2E-50 2.6E-55 343.7 23.6 197 10-206 1-204 (240)
67 cd03264 ABC_drug_resistance_li 100.0 7.7E-51 1.7E-55 338.5 22.0 192 11-206 1-197 (211)
68 cd03260 ABC_PstB_phosphate_tra 100.0 8.6E-51 1.9E-55 341.8 22.4 194 11-206 1-208 (227)
69 PRK11607 potG putrescine trans 100.0 1.5E-50 3.2E-55 363.8 25.4 196 8-206 17-218 (377)
70 PRK11248 tauB taurine transpor 100.0 1.6E-50 3.4E-55 346.6 23.9 191 10-206 1-197 (255)
71 cd03263 ABC_subfamily_A The AB 100.0 1.1E-50 2.5E-55 339.3 22.5 194 11-207 1-201 (220)
72 PRK10584 putative ABC transpor 100.0 2.5E-50 5.4E-55 339.2 24.6 198 8-206 4-214 (228)
73 PRK11264 putative amino-acid A 100.0 1.9E-50 4.1E-55 344.3 24.1 197 10-206 3-212 (250)
74 PRK11247 ssuB aliphatic sulfon 100.0 1E-50 2.3E-55 348.1 22.6 193 7-206 9-202 (257)
75 PRK13543 cytochrome c biogenes 100.0 2E-50 4.4E-55 337.2 23.7 198 5-206 6-205 (214)
76 PRK11614 livF leucine/isoleuci 100.0 1.3E-50 2.7E-55 343.0 22.5 199 9-207 4-206 (237)
77 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 2.3E-50 5E-55 341.3 23.7 194 10-206 1-200 (236)
78 TIGR01188 drrA daunorubicin re 100.0 1.1E-50 2.4E-55 355.4 22.2 187 18-206 1-192 (302)
79 cd03257 ABC_NikE_OppD_transpor 100.0 2.8E-50 6E-55 338.3 23.7 197 10-206 1-214 (228)
80 TIGR03410 urea_trans_UrtE urea 100.0 2.5E-50 5.3E-55 339.6 23.1 196 11-206 1-200 (230)
81 PRK13647 cbiO cobalt transport 100.0 3.2E-50 7E-55 347.9 23.6 196 10-206 4-206 (274)
82 cd03295 ABC_OpuCA_Osmoprotecti 100.0 3.5E-50 7.5E-55 341.4 23.3 195 11-206 1-204 (242)
83 COG1137 YhbG ABC-type (unclass 100.0 5.8E-52 1.3E-56 335.8 11.7 199 9-207 3-208 (243)
84 COG0411 LivG ABC-type branched 100.0 4.5E-51 9.8E-56 339.9 17.3 208 8-215 2-227 (250)
85 TIGR03608 L_ocin_972_ABC putat 100.0 2.9E-50 6.3E-55 333.5 22.1 193 13-206 1-201 (206)
86 TIGR01189 ccmA heme ABC export 100.0 3.6E-50 7.7E-55 331.7 22.5 190 11-202 1-191 (198)
87 PRK13539 cytochrome c biogenes 100.0 5.8E-50 1.3E-54 332.9 23.1 190 10-203 2-192 (207)
88 PRK13548 hmuV hemin importer A 100.0 7.1E-50 1.5E-54 342.9 24.1 196 10-206 2-209 (258)
89 PRK11124 artP arginine transpo 100.0 4.7E-50 1E-54 340.5 22.6 197 10-206 2-209 (242)
90 PRK11231 fecE iron-dicitrate t 100.0 4.8E-50 1E-54 343.1 22.1 196 10-206 2-206 (255)
91 PRK13637 cbiO cobalt transport 100.0 9.4E-50 2E-54 347.2 24.3 197 10-206 2-213 (287)
92 PRK13641 cbiO cobalt transport 100.0 1E-49 2.2E-54 346.9 24.4 196 10-206 2-213 (287)
93 TIGR00972 3a0107s01c2 phosphat 100.0 1.4E-49 3E-54 338.7 24.6 196 10-207 1-212 (247)
94 PRK13631 cbiO cobalt transport 100.0 1.3E-49 2.9E-54 351.0 25.1 200 6-206 17-244 (320)
95 PRK10619 histidine/lysine/argi 100.0 1.5E-49 3.2E-54 340.5 24.6 198 9-206 4-220 (257)
96 cd03298 ABC_ThiQ_thiamine_tran 100.0 6.2E-50 1.4E-54 333.0 21.5 192 11-207 1-198 (211)
97 TIGR01978 sufC FeS assembly AT 100.0 1.2E-49 2.6E-54 337.6 23.4 196 11-206 1-213 (243)
98 PRK14250 phosphate ABC transpo 100.0 1.1E-49 2.3E-54 338.5 23.0 195 10-206 3-200 (241)
99 TIGR01186 proV glycine betaine 100.0 4.8E-50 1E-54 358.5 21.7 189 18-206 1-198 (363)
100 TIGR03740 galliderm_ABC gallid 100.0 1.3E-49 2.7E-54 334.0 22.9 191 11-206 1-192 (223)
101 PRK10070 glycine betaine trans 100.0 1.4E-49 3E-54 359.4 24.8 198 9-206 3-233 (400)
102 PRK10575 iron-hydroxamate tran 100.0 7.6E-50 1.7E-54 343.9 22.0 197 9-206 10-216 (265)
103 PRK15079 oligopeptide ABC tran 100.0 2E-49 4.3E-54 351.3 24.9 199 8-206 6-230 (331)
104 PRK13638 cbiO cobalt transport 100.0 1.2E-49 2.7E-54 343.6 23.0 197 10-206 1-204 (271)
105 PRK10247 putative ABC transpor 100.0 2.1E-49 4.6E-54 333.4 23.8 196 8-206 5-205 (225)
106 PRK13644 cbiO cobalt transport 100.0 1.7E-49 3.7E-54 343.4 23.7 196 10-206 1-203 (274)
107 PRK13643 cbiO cobalt transport 100.0 1.6E-49 3.5E-54 345.8 23.6 196 10-206 1-212 (288)
108 COG4152 ABC-type uncharacteriz 100.0 2E-50 4.3E-55 335.5 16.7 203 9-216 1-208 (300)
109 PRK13650 cbiO cobalt transport 100.0 2.4E-49 5.1E-54 343.4 24.0 196 9-206 3-208 (279)
110 PRK09984 phosphonate/organopho 100.0 1.9E-49 4.1E-54 340.7 22.6 198 9-206 3-221 (262)
111 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.1E-49 2.3E-54 343.9 21.0 195 12-206 26-229 (269)
112 TIGR03005 ectoine_ehuA ectoine 100.0 2.7E-49 5.9E-54 337.8 22.8 196 11-206 1-215 (252)
113 PRK13634 cbiO cobalt transport 100.0 3.7E-49 8E-54 343.9 23.8 196 10-206 2-214 (290)
114 TIGR02769 nickel_nikE nickel i 100.0 4E-49 8.7E-54 339.4 23.7 197 10-206 2-219 (265)
115 PRK14242 phosphate transporter 100.0 5.5E-49 1.2E-53 336.0 24.3 197 8-206 4-216 (253)
116 PRK13651 cobalt transporter AT 100.0 2.9E-49 6.3E-54 346.8 23.2 197 10-206 2-233 (305)
117 PRK14247 phosphate ABC transpo 100.0 4.9E-49 1.1E-53 335.7 23.9 195 10-206 3-213 (250)
118 PRK10253 iron-enterobactin tra 100.0 2.2E-49 4.7E-54 341.0 21.8 198 8-206 5-212 (265)
119 PRK14273 phosphate ABC transpo 100.0 6E-49 1.3E-53 336.1 24.0 198 7-206 4-217 (254)
120 COG0410 LivF ABC-type branched 100.0 4.3E-49 9.3E-54 325.8 22.3 202 9-210 2-209 (237)
121 PRK15439 autoinducer 2 ABC tra 100.0 3.3E-49 7.3E-54 368.1 24.2 199 8-206 9-208 (510)
122 PRK10762 D-ribose transporter 100.0 1.8E-49 3.9E-54 369.1 22.3 198 9-206 3-209 (501)
123 COG3840 ThiQ ABC-type thiamine 100.0 5.4E-50 1.2E-54 320.2 16.1 193 10-207 1-199 (231)
124 PRK13635 cbiO cobalt transport 100.0 5.7E-49 1.2E-53 341.0 23.7 196 9-206 4-208 (279)
125 TIGR03873 F420-0_ABC_ATP propo 100.0 4.6E-49 1E-53 337.2 22.9 195 11-206 2-205 (256)
126 cd03297 ABC_ModC_molybdenum_tr 100.0 3.9E-49 8.5E-54 329.1 21.8 193 11-207 2-201 (214)
127 PRK13636 cbiO cobalt transport 100.0 8.6E-49 1.9E-53 340.5 24.6 198 9-206 4-210 (283)
128 PRK10744 pstB phosphate transp 100.0 6.5E-49 1.4E-53 337.1 23.5 201 4-206 7-223 (260)
129 PRK13652 cbiO cobalt transport 100.0 1E-48 2.2E-53 339.0 24.8 196 10-206 3-206 (277)
130 PRK11144 modC molybdate transp 100.0 5E-49 1.1E-53 351.6 23.5 193 10-206 1-197 (352)
131 PRK13646 cbiO cobalt transport 100.0 5E-49 1.1E-53 342.5 22.6 196 10-206 2-214 (286)
132 PRK13649 cbiO cobalt transport 100.0 7.9E-49 1.7E-53 340.0 23.4 196 10-206 2-213 (280)
133 PRK09700 D-allose transporter 100.0 3E-49 6.5E-54 368.3 22.2 198 9-206 4-213 (510)
134 TIGR01277 thiQ thiamine ABC tr 100.0 7.4E-49 1.6E-53 327.3 22.2 192 11-207 1-198 (213)
135 PRK11308 dppF dipeptide transp 100.0 1.5E-48 3.3E-53 345.2 25.5 198 9-206 4-223 (327)
136 PRK13549 xylose transporter AT 100.0 3.4E-49 7.4E-54 367.7 22.3 198 9-206 4-211 (506)
137 PRK15112 antimicrobial peptide 100.0 9.9E-49 2.1E-53 337.4 23.4 197 9-206 3-218 (267)
138 PRK14268 phosphate ABC transpo 100.0 1.4E-48 3.1E-53 334.7 24.2 197 8-206 10-221 (258)
139 PRK10771 thiQ thiamine transpo 100.0 5.7E-49 1.2E-53 332.0 21.4 192 10-206 1-198 (232)
140 PRK13541 cytochrome c biogenes 100.0 8.1E-49 1.8E-53 323.1 21.8 189 10-204 1-189 (195)
141 PRK13639 cbiO cobalt transport 100.0 1.3E-48 2.7E-53 338.1 23.7 197 10-206 1-205 (275)
142 PRK13632 cbiO cobalt transport 100.0 9.6E-49 2.1E-53 338.1 22.8 198 7-206 4-210 (271)
143 TIGR02324 CP_lyasePhnL phospho 100.0 1.5E-48 3.3E-53 327.4 23.4 197 10-206 1-217 (224)
144 PRK14267 phosphate ABC transpo 100.0 1E-48 2.2E-53 334.3 22.6 196 9-206 3-216 (253)
145 PRK14259 phosphate ABC transpo 100.0 1.5E-48 3.3E-53 336.6 23.6 201 6-208 9-223 (269)
146 TIGR02982 heterocyst_DevA ABC 100.0 1.9E-48 4.1E-53 326.4 23.4 195 11-206 2-209 (220)
147 PRK11701 phnK phosphonate C-P 100.0 2.2E-48 4.9E-53 333.3 24.3 198 9-206 5-220 (258)
148 cd03300 ABC_PotA_N PotA is an 100.0 1.5E-48 3.3E-53 329.6 22.4 194 11-207 1-200 (232)
149 PRK13633 cobalt transporter AT 100.0 1.6E-48 3.5E-53 338.3 23.2 195 9-203 3-210 (280)
150 PRK14241 phosphate transporter 100.0 3E-48 6.5E-53 332.5 24.4 197 10-207 4-216 (258)
151 PRK14235 phosphate transporter 100.0 3.6E-48 7.8E-53 333.9 24.9 197 8-206 17-230 (267)
152 TIGR02142 modC_ABC molybdenum 100.0 1.7E-48 3.7E-53 348.4 23.5 190 15-206 4-200 (354)
153 PRK11288 araG L-arabinose tran 100.0 1.1E-48 2.3E-53 364.0 22.9 198 9-206 3-208 (501)
154 PRK15093 antimicrobial peptide 100.0 2.6E-48 5.6E-53 344.3 24.2 198 9-206 2-227 (330)
155 PRK14248 phosphate ABC transpo 100.0 4.1E-48 8.9E-53 333.5 24.8 200 5-206 16-231 (268)
156 PRK14269 phosphate ABC transpo 100.0 2.4E-48 5.2E-53 331.0 22.9 194 10-206 2-209 (246)
157 PRK13547 hmuV hemin importer A 100.0 2.1E-48 4.5E-53 336.4 22.5 196 10-206 1-223 (272)
158 TIGR01166 cbiO cobalt transpor 100.0 1.1E-48 2.4E-53 320.8 19.8 181 20-200 2-189 (190)
159 PRK11022 dppD dipeptide transp 100.0 3.8E-48 8.2E-53 342.6 24.1 197 10-206 3-222 (326)
160 TIGR02323 CP_lyasePhnK phospho 100.0 4.4E-48 9.6E-53 330.4 23.6 199 9-207 2-218 (253)
161 PRK14254 phosphate ABC transpo 100.0 6.4E-48 1.4E-52 335.4 25.0 199 7-207 36-248 (285)
162 PRK13648 cbiO cobalt transport 100.0 5.5E-48 1.2E-52 333.0 23.7 195 8-203 5-208 (269)
163 PRK14245 phosphate ABC transpo 100.0 8.3E-48 1.8E-52 328.3 24.2 197 9-207 2-214 (250)
164 PRK14274 phosphate ABC transpo 100.0 7.8E-48 1.7E-52 330.1 24.1 198 7-206 9-222 (259)
165 TIGR00968 3a0106s01 sulfate AB 100.0 5.7E-48 1.2E-52 327.1 23.0 194 11-207 1-200 (237)
166 PRK13645 cbiO cobalt transport 100.0 5.3E-48 1.2E-52 336.3 23.4 198 9-206 5-219 (289)
167 PRK09473 oppD oligopeptide tra 100.0 1.1E-47 2.4E-52 340.1 25.6 201 6-206 8-230 (330)
168 PRK14270 phosphate ABC transpo 100.0 1.2E-47 2.6E-52 327.5 24.4 196 9-206 3-214 (251)
169 PRK13640 cbiO cobalt transport 100.0 7.9E-48 1.7E-52 334.3 23.5 196 9-206 4-211 (282)
170 cd03230 ABC_DR_subfamily_A Thi 100.0 8.6E-48 1.9E-52 311.5 21.9 163 11-206 1-163 (173)
171 CHL00131 ycf16 sulfate ABC tra 100.0 1.4E-47 3E-52 326.9 24.2 197 8-204 5-217 (252)
172 cd03229 ABC_Class3 This class 100.0 7E-48 1.5E-52 313.4 21.2 168 11-207 1-170 (178)
173 PRK13642 cbiO cobalt transport 100.0 1.2E-47 2.5E-52 332.4 23.9 193 10-203 4-206 (277)
174 cd03299 ABC_ModC_like Archeal 100.0 1.2E-47 2.6E-52 324.7 23.3 192 11-206 1-198 (235)
175 PRK14240 phosphate transporter 100.0 1.6E-47 3.4E-52 326.5 23.9 195 10-206 3-213 (250)
176 PRK14251 phosphate ABC transpo 100.0 1.1E-47 2.4E-52 327.5 23.0 196 9-206 3-214 (251)
177 PRK14238 phosphate transporter 100.0 1.4E-47 3.1E-52 330.9 23.9 200 5-206 19-234 (271)
178 PRK14239 phosphate transporter 100.0 1.9E-47 4.1E-52 326.2 24.2 196 9-206 4-215 (252)
179 cd03245 ABCC_bacteriocin_expor 100.0 3.8E-48 8.2E-53 324.1 19.4 192 10-206 2-206 (220)
180 PRK14249 phosphate ABC transpo 100.0 2.1E-47 4.5E-52 326.0 24.3 196 9-206 3-214 (251)
181 PRK14256 phosphate ABC transpo 100.0 2E-47 4.4E-52 326.2 24.2 197 10-207 4-216 (252)
182 PRK14237 phosphate transporter 100.0 2.3E-47 5E-52 328.9 24.7 198 7-206 17-230 (267)
183 cd03267 ABC_NatA_like Similar 100.0 7.6E-48 1.6E-52 326.3 21.3 187 19-207 30-223 (236)
184 TIGR02633 xylG D-xylose ABC tr 100.0 6.3E-48 1.4E-52 358.6 22.8 197 10-206 1-209 (500)
185 PRK10419 nikE nickel transport 100.0 1.8E-47 4E-52 329.7 23.8 198 9-206 2-220 (268)
186 PRK14262 phosphate ABC transpo 100.0 2E-47 4.3E-52 325.8 23.3 196 9-206 2-213 (250)
187 PRK14265 phosphate ABC transpo 100.0 2.6E-47 5.6E-52 329.8 24.1 199 7-207 17-229 (274)
188 cd03215 ABC_Carb_Monos_II This 100.0 2E-47 4.3E-52 311.7 21.8 168 9-207 3-173 (182)
189 PRK15056 manganese/iron transp 100.0 9.5E-48 2.1E-52 332.1 21.0 194 10-207 6-211 (272)
190 PRK14275 phosphate ABC transpo 100.0 2.8E-47 6.1E-52 331.5 24.0 198 7-206 36-249 (286)
191 cd03234 ABCG_White The White s 100.0 1.9E-47 4.1E-52 321.5 22.2 194 10-207 3-213 (226)
192 PRK14236 phosphate transporter 100.0 4.9E-47 1.1E-51 327.6 25.2 197 8-206 23-235 (272)
193 PRK09544 znuC high-affinity zi 100.0 1.4E-47 3.1E-52 327.7 21.5 184 9-206 3-189 (251)
194 PRK14271 phosphate ABC transpo 100.0 4.4E-47 9.5E-52 328.7 24.7 197 8-206 19-230 (276)
195 PRK14253 phosphate ABC transpo 100.0 3.4E-47 7.4E-52 324.2 23.6 195 10-206 3-212 (249)
196 TIGR03415 ABC_choXWV_ATP choli 100.0 5.9E-48 1.3E-52 346.7 19.7 191 16-206 30-233 (382)
197 PRK10982 galactose/methyl gala 100.0 6.9E-48 1.5E-52 357.7 20.8 194 13-206 1-202 (491)
198 PRK14272 phosphate ABC transpo 100.0 4.3E-47 9.4E-52 323.9 23.7 196 10-206 4-215 (252)
199 COG4598 HisP ABC-type histidin 100.0 8.7E-49 1.9E-53 313.2 12.3 199 8-206 4-220 (256)
200 PRK14260 phosphate ABC transpo 100.0 4.6E-47 9.9E-52 325.5 23.7 197 9-207 6-218 (259)
201 PRK14243 phosphate transporter 100.0 3.4E-47 7.4E-52 327.3 22.8 197 9-207 9-219 (264)
202 PRK10418 nikD nickel transport 100.0 4.1E-47 8.8E-52 325.0 23.1 193 10-206 4-209 (254)
203 cd03248 ABCC_TAP TAP, the Tran 100.0 1.2E-47 2.7E-52 322.4 19.5 196 7-206 8-216 (226)
204 cd03251 ABCC_MsbA MsbA is an e 100.0 1.4E-47 3E-52 323.5 19.9 191 11-206 1-204 (234)
205 PRK09700 D-allose transporter 100.0 9.9E-48 2.1E-52 358.1 20.4 197 8-206 263-477 (510)
206 PRK14255 phosphate ABC transpo 100.0 8.5E-47 1.8E-51 322.3 24.5 197 8-206 3-215 (252)
207 PRK14258 phosphate ABC transpo 100.0 7.5E-47 1.6E-51 324.6 24.2 199 8-207 5-220 (261)
208 PRK09580 sufC cysteine desulfu 100.0 3.8E-47 8.3E-52 323.4 22.1 197 10-206 1-214 (248)
209 PRK10261 glutathione transport 100.0 6.3E-47 1.4E-51 360.2 26.0 199 8-206 311-532 (623)
210 COG4181 Predicted ABC-type tra 100.0 1.2E-47 2.7E-52 304.1 17.5 195 10-204 6-213 (228)
211 PRK14244 phosphate ABC transpo 100.0 5.9E-47 1.3E-51 323.2 22.8 194 11-206 6-216 (251)
212 PRK13549 xylose transporter AT 100.0 1.5E-47 3.3E-52 356.6 20.6 200 8-207 257-474 (506)
213 COG1129 MglA ABC-type sugar tr 100.0 2.4E-47 5.3E-52 347.8 21.2 200 7-206 5-213 (500)
214 cd03252 ABCC_Hemolysin The ABC 100.0 2.5E-47 5.4E-52 322.7 19.7 191 11-206 1-204 (237)
215 COG4175 ProV ABC-type proline/ 100.0 6.7E-48 1.5E-52 330.4 16.1 196 10-205 4-232 (386)
216 PRK14261 phosphate ABC transpo 100.0 1.1E-46 2.5E-51 321.8 23.6 196 9-206 5-216 (253)
217 cd03254 ABCC_Glucan_exporter_l 100.0 2.3E-47 4.9E-52 321.2 18.9 192 10-206 2-205 (229)
218 cd03214 ABC_Iron-Siderophores_ 100.0 3.8E-47 8.3E-52 309.5 19.6 166 12-207 1-167 (180)
219 COG4525 TauB ABC-type taurine 100.0 1.9E-47 4.1E-52 308.8 16.9 190 9-204 2-199 (259)
220 PRK14246 phosphate ABC transpo 100.0 1.4E-46 3E-51 322.5 23.2 200 6-207 6-221 (257)
221 PRK10261 glutathione transport 100.0 7.5E-47 1.6E-51 359.6 23.4 200 7-206 9-237 (623)
222 PRK14264 phosphate ABC transpo 100.0 2E-46 4.4E-51 328.8 24.3 199 7-207 42-268 (305)
223 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 3.8E-47 8.3E-52 319.7 18.9 183 11-206 23-210 (224)
224 PRK10938 putative molybdenum t 100.0 3.2E-47 6.9E-52 353.1 20.2 193 10-206 3-203 (490)
225 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 4.8E-47 1E-51 321.1 19.3 191 11-206 1-205 (238)
226 cd03246 ABCC_Protease_Secretio 100.0 1.1E-46 2.3E-51 305.0 20.5 161 11-206 1-163 (173)
227 cd03213 ABCG_EPDR ABCG transpo 100.0 1.4E-46 3.1E-51 309.8 21.5 170 9-206 2-180 (194)
228 cd03253 ABCC_ATM1_transporter 100.0 8.2E-47 1.8E-51 319.1 20.1 191 11-206 1-203 (236)
229 TIGR02633 xylG D-xylose ABC tr 100.0 4.7E-47 1E-51 352.8 20.2 198 9-206 256-471 (500)
230 PRK14263 phosphate ABC transpo 100.0 3.6E-46 7.7E-51 320.6 24.2 198 8-207 6-217 (261)
231 TIGR03269 met_CoM_red_A2 methy 100.0 1.4E-46 2.9E-51 351.2 23.2 196 11-206 1-237 (520)
232 PRK14252 phosphate ABC transpo 100.0 4.1E-46 8.9E-51 320.6 24.1 198 7-206 13-228 (265)
233 PRK15134 microcin C ABC transp 100.0 1.7E-46 3.6E-51 351.3 23.2 198 8-206 273-494 (529)
234 COG3845 ABC-type uncharacteriz 100.0 6.5E-47 1.4E-51 340.1 19.6 198 9-206 3-208 (501)
235 cd03244 ABCC_MRP_domain2 Domai 100.0 1.1E-46 2.3E-51 315.5 19.6 189 10-203 2-203 (221)
236 TIGR01184 ntrCD nitrate transp 100.0 1.3E-46 2.8E-51 317.6 20.2 175 26-206 1-183 (230)
237 PRK15134 microcin C ABC transp 100.0 2E-46 4.4E-51 350.7 23.2 198 9-206 4-225 (529)
238 cd03232 ABC_PDR_domain2 The pl 100.0 3.9E-46 8.6E-51 306.6 22.1 169 9-206 2-177 (192)
239 cd03217 ABC_FeS_Assembly ABC-t 100.0 3E-46 6.5E-51 309.1 21.3 170 11-206 1-173 (200)
240 PRK14266 phosphate ABC transpo 100.0 5.6E-46 1.2E-50 316.9 23.3 195 10-206 3-213 (250)
241 TIGR03269 met_CoM_red_A2 methy 100.0 3.1E-46 6.7E-51 348.8 23.2 201 7-207 276-497 (520)
242 cd03369 ABCC_NFT1 Domain 2 of 100.0 3.7E-46 8E-51 309.7 20.7 186 8-206 4-191 (207)
243 cd03216 ABC_Carb_Monos_I This 100.0 8.9E-46 1.9E-50 297.2 21.2 150 11-206 1-150 (163)
244 cd03247 ABCC_cytochrome_bd The 100.0 3.5E-46 7.5E-51 303.3 18.9 162 11-206 1-164 (178)
245 cd03228 ABCC_MRP_Like The MRP 100.0 5.3E-46 1.2E-50 300.4 19.4 160 11-206 1-162 (171)
246 TIGR02868 CydC thiol reductant 100.0 2.4E-46 5.1E-51 350.0 20.0 184 10-198 334-529 (529)
247 cd03233 ABC_PDR_domain1 The pl 100.0 1.1E-45 2.4E-50 306.2 21.8 179 9-207 2-189 (202)
248 PRK03695 vitamin B12-transport 100.0 3.9E-46 8.5E-51 318.0 19.6 189 12-206 2-201 (248)
249 cd03250 ABCC_MRP_domain1 Domai 100.0 3.7E-46 8.1E-51 309.0 18.8 178 11-206 1-195 (204)
250 cd03290 ABCC_SUR1_N The SUR do 100.0 8.4E-46 1.8E-50 309.8 20.1 191 12-206 2-209 (218)
251 PRK14257 phosphate ABC transpo 100.0 2.3E-45 5E-50 325.1 23.6 197 8-206 78-292 (329)
252 COG1123 ATPase components of v 100.0 1.1E-45 2.4E-50 339.0 22.2 200 7-206 277-498 (539)
253 TIGR02770 nickel_nikD nickel i 100.0 1E-45 2.2E-50 312.0 20.2 179 25-206 1-194 (230)
254 COG0444 DppD ABC-type dipeptid 100.0 1.8E-45 3.9E-50 317.7 21.9 197 10-206 1-222 (316)
255 COG4619 ABC-type uncharacteriz 100.0 9.9E-47 2.1E-51 298.1 12.5 194 10-205 3-201 (223)
256 COG4559 ABC-type hemin transpo 100.0 7.8E-46 1.7E-50 302.6 17.8 196 10-206 1-209 (259)
257 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.3E-45 2.8E-50 319.4 20.1 190 10-206 2-204 (275)
258 COG1119 ModF ABC-type molybden 100.0 2.5E-46 5.4E-51 311.7 15.0 204 9-220 30-247 (257)
259 PRK10762 D-ribose transporter 100.0 1E-45 2.2E-50 344.0 20.6 193 9-206 256-463 (501)
260 PRK11288 araG L-arabinose tran 100.0 1E-45 2.2E-50 344.0 19.6 194 9-206 256-464 (501)
261 COG2274 SunT ABC-type bacterio 100.0 9.5E-46 2.1E-50 353.1 19.8 192 9-204 470-674 (709)
262 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 2.5E-45 5.5E-50 352.6 22.2 188 10-204 451-651 (686)
263 PRK11176 lipid transporter ATP 100.0 1.6E-45 3.5E-50 347.9 19.9 191 10-203 341-544 (582)
264 PRK11174 cysteine/glutathione 100.0 2.8E-45 6E-50 346.7 21.2 190 10-204 349-550 (588)
265 TIGR01257 rim_protein retinal- 100.0 6.5E-45 1.4E-49 374.3 25.3 197 8-206 1935-2138(2272)
266 COG4604 CeuD ABC-type enteroch 100.0 2E-46 4.4E-51 303.1 10.5 197 10-207 1-205 (252)
267 PRK10938 putative molybdenum t 100.0 3E-45 6.5E-50 339.9 19.5 199 8-206 258-471 (490)
268 PRK11160 cysteine/glutathione 100.0 5.8E-45 1.3E-49 343.9 21.5 192 9-204 337-540 (574)
269 PRK15439 autoinducer 2 ABC tra 100.0 3.5E-45 7.5E-50 341.1 19.5 194 8-206 266-471 (510)
270 PRK10982 galactose/methyl gala 100.0 5.6E-45 1.2E-49 338.2 20.7 197 8-206 248-459 (491)
271 COG4133 CcmA ABC-type transpor 100.0 3.1E-45 6.6E-50 294.1 16.2 191 9-201 1-193 (209)
272 PRK10790 putative multidrug tr 100.0 6.7E-45 1.5E-49 344.4 21.2 190 10-204 340-541 (592)
273 cd03223 ABCD_peroxisomal_ALDP 100.0 1.1E-44 2.5E-49 291.6 19.4 154 11-206 1-155 (166)
274 cd03288 ABCC_SUR2 The SUR doma 100.0 8.8E-45 1.9E-49 311.1 19.8 190 9-203 18-220 (257)
275 TIGR02857 CydD thiol reductant 100.0 9.9E-45 2.1E-49 339.1 21.4 190 10-203 320-522 (529)
276 PRK15064 ABC transporter ATP-b 100.0 1.4E-44 3E-49 338.4 21.9 183 9-206 318-503 (530)
277 PRK11819 putative ABC transpor 100.0 1.2E-44 2.6E-49 340.6 21.1 182 9-206 5-228 (556)
278 PRK15064 ABC transporter ATP-b 100.0 1.5E-44 3.3E-49 338.1 21.7 182 10-206 1-220 (530)
279 KOG0058 Peptide exporter, ABC 100.0 3.9E-45 8.6E-50 340.8 17.5 192 9-204 464-669 (716)
280 COG4988 CydD ABC-type transpor 100.0 7.6E-45 1.6E-49 332.9 19.0 190 11-204 321-521 (559)
281 TIGR01257 rim_protein retinal- 100.0 4E-44 8.6E-49 368.5 25.8 195 9-206 927-1128(2272)
282 TIGR01193 bacteriocin_ABC ABC- 100.0 1.1E-44 2.4E-49 349.3 20.5 190 10-203 473-674 (708)
283 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1E-44 2.3E-49 349.5 19.8 188 10-203 477-677 (710)
284 PRK13409 putative ATPase RIL; 100.0 2.9E-44 6.3E-49 339.3 22.3 184 8-206 338-522 (590)
285 PRK13545 tagH teichoic acids e 100.0 5.4E-44 1.2E-48 329.0 23.5 186 8-207 19-212 (549)
286 TIGR02203 MsbA_lipidA lipid A 100.0 1.1E-44 2.3E-49 341.4 19.1 191 10-203 330-533 (571)
287 COG1123 ATPase components of v 100.0 3.9E-44 8.4E-49 328.9 21.9 198 9-206 4-223 (539)
288 TIGR03375 type_I_sec_LssB type 100.0 2.3E-44 4.9E-49 346.4 21.1 192 9-204 462-666 (694)
289 PRK13657 cyclic beta-1,2-gluca 100.0 3.5E-44 7.6E-49 339.3 21.5 190 10-203 334-535 (588)
290 cd03237 ABC_RNaseL_inhibitor_d 100.0 3.1E-44 6.8E-49 306.2 19.1 171 23-206 7-184 (246)
291 TIGR00958 3a01208 Conjugate Tr 100.0 2.8E-44 6E-49 346.6 20.1 190 9-204 477-680 (711)
292 PRK13546 teichoic acids export 100.0 1.9E-43 4.1E-48 304.3 22.9 183 10-206 4-211 (264)
293 TIGR01842 type_I_sec_PrtD type 100.0 8E-44 1.7E-48 334.2 22.0 192 9-203 315-519 (544)
294 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 9.3E-44 2E-48 334.3 22.2 185 8-207 320-509 (552)
295 COG1132 MdlB ABC-type multidru 100.0 5.4E-44 1.2E-48 336.8 20.3 192 9-204 327-530 (567)
296 PRK11819 putative ABC transpor 100.0 1.3E-43 2.7E-48 333.7 22.7 185 8-207 322-511 (556)
297 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 6.9E-44 1.5E-48 335.2 20.6 182 9-206 3-226 (552)
298 COG4161 ArtP ABC-type arginine 100.0 3.6E-44 7.8E-49 282.5 14.4 196 10-205 2-208 (242)
299 cd03236 ABC_RNaseL_inhibitor_d 100.0 5E-44 1.1E-48 306.4 16.6 191 14-206 4-207 (255)
300 TIGR03771 anch_rpt_ABC anchore 100.0 6.3E-44 1.4E-48 299.9 16.7 171 31-207 1-182 (223)
301 PRK11147 ABC transporter ATPas 100.0 2E-43 4.3E-48 336.9 21.9 184 8-206 317-505 (635)
302 TIGR02204 MsbA_rel ABC transpo 100.0 1.6E-43 3.5E-48 333.7 21.1 190 10-203 337-540 (576)
303 KOG0057 Mitochondrial Fe/S clu 100.0 7.3E-44 1.6E-48 323.3 17.7 191 9-204 350-552 (591)
304 PLN03211 ABC transporter G-25; 100.0 1.4E-43 3E-48 338.4 19.8 189 13-206 71-275 (659)
305 TIGR01192 chvA glucan exporter 100.0 3.1E-43 6.8E-48 332.8 21.9 190 10-203 334-535 (585)
306 PRK10535 macrolide transporter 100.0 1.1E-42 2.3E-47 332.4 24.8 195 9-203 3-209 (648)
307 PRK10789 putative multidrug tr 100.0 3.1E-43 6.6E-48 331.9 20.8 190 10-203 313-515 (569)
308 TIGR01846 type_I_sec_HlyB type 100.0 5.6E-43 1.2E-47 336.8 21.2 191 9-203 454-657 (694)
309 COG4608 AppF ABC-type oligopep 100.0 2.8E-43 6E-48 298.3 16.7 165 9-206 3-178 (268)
310 PRK10636 putative ABC transpor 100.0 1.1E-42 2.3E-47 331.8 21.6 184 7-206 309-495 (638)
311 PRK10522 multidrug transporter 100.0 1.2E-42 2.6E-47 326.5 21.5 187 10-203 322-515 (547)
312 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.2E-42 2.7E-47 326.9 21.6 188 9-202 336-535 (555)
313 PTZ00265 multidrug resistance 100.0 4.1E-43 8.8E-48 357.8 19.4 192 10-204 1165-1425(1466)
314 KOG0055 Multidrug/pheromone ex 100.0 3.6E-43 7.7E-48 343.2 17.0 192 9-204 349-554 (1228)
315 COG4674 Uncharacterized ABC-ty 100.0 5.6E-43 1.2E-47 282.7 14.9 197 9-206 4-214 (249)
316 COG4987 CydC ABC-type transpor 100.0 2.7E-43 5.8E-48 319.3 14.6 191 10-204 336-539 (573)
317 cd03291 ABCC_CFTR1 The CFTR su 100.0 4.2E-42 9.2E-47 298.4 21.5 175 8-202 37-223 (282)
318 COG4148 ModC ABC-type molybdat 100.0 3.4E-43 7.5E-48 297.2 13.7 188 16-206 6-197 (352)
319 PRK10636 putative ABC transpor 100.0 4.1E-42 8.8E-47 327.8 21.4 193 10-206 1-214 (638)
320 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 6.3E-42 1.4E-46 269.7 18.7 135 11-206 1-135 (144)
321 TIGR01187 potA spermidine/putr 100.0 3.9E-42 8.5E-47 304.2 18.6 163 41-206 1-169 (325)
322 PTZ00265 multidrug resistance 100.0 3.7E-42 8E-47 350.7 19.9 192 10-203 382-645 (1466)
323 cd03222 ABC_RNaseL_inhibitor T 100.0 1.2E-41 2.5E-46 276.8 18.2 136 14-206 4-140 (177)
324 PLN03232 ABC transporter C fam 100.0 8.5E-42 1.8E-46 349.7 21.1 191 9-204 1233-1436(1495)
325 PLN03130 ABC transporter C fam 100.0 1.1E-41 2.4E-46 349.9 21.6 191 9-204 1236-1439(1622)
326 PRK15177 Vi polysaccharide exp 100.0 1.4E-41 3.1E-46 283.9 18.0 168 24-206 1-171 (213)
327 COG0488 Uup ATPase components 100.0 1.3E-41 2.8E-46 315.8 19.0 182 9-206 2-218 (530)
328 TIGR00954 3a01203 Peroxysomal 100.0 1.6E-41 3.5E-46 324.7 20.1 179 9-203 450-644 (659)
329 COG0396 sufC Cysteine desulfur 100.0 5.4E-41 1.2E-45 277.2 20.2 196 9-204 2-210 (251)
330 cd00267 ABC_ATPase ABC (ATP-bi 100.0 1.1E-40 2.3E-45 265.6 20.4 147 13-206 2-148 (157)
331 PRK11147 ABC transporter ATPas 100.0 4.3E-41 9.3E-46 320.9 21.1 191 10-206 3-221 (635)
332 TIGR00956 3a01205 Pleiotropic 100.0 6.1E-41 1.3E-45 341.1 23.3 188 9-201 758-965 (1394)
333 COG4136 ABC-type uncharacteriz 100.0 9.8E-42 2.1E-46 265.6 13.4 190 10-202 2-199 (213)
334 PLN03073 ABC transporter F fam 100.0 1E-40 2.3E-45 320.6 23.3 182 8-206 506-692 (718)
335 PTZ00243 ABC transporter; Prov 100.0 8.2E-41 1.8E-45 342.9 22.2 190 10-204 1308-1511(1560)
336 KOG0055 Multidrug/pheromone ex 100.0 2.1E-41 4.6E-46 330.8 16.8 191 10-204 987-1191(1228)
337 TIGR00957 MRP_assoc_pro multi 100.0 8.5E-41 1.8E-45 342.8 21.1 191 9-204 1283-1486(1522)
338 PRK13409 putative ATPase RIL; 100.0 2E-41 4.3E-46 320.0 14.9 185 15-206 78-279 (590)
339 TIGR00955 3a01204 The Eye Pigm 100.0 1.7E-40 3.7E-45 315.8 19.6 182 21-206 36-235 (617)
340 COG4618 ArpD ABC-type protease 100.0 2.3E-40 4.9E-45 298.4 18.6 207 8-217 332-556 (580)
341 PLN03140 ABC transporter G fam 100.0 7.7E-40 1.7E-44 333.1 23.2 193 10-206 867-1088(1470)
342 COG4172 ABC-type uncharacteriz 100.0 7.7E-40 1.7E-44 288.4 19.7 204 8-212 274-501 (534)
343 TIGR01271 CFTR_protein cystic 100.0 9.4E-40 2E-44 334.5 22.4 190 9-204 1216-1418(1490)
344 cd03238 ABC_UvrA The excision 100.0 2.5E-39 5.4E-44 262.9 17.2 147 22-206 7-156 (176)
345 COG4586 ABC-type uncharacteriz 100.0 1.3E-39 2.8E-44 274.7 13.9 181 24-206 38-225 (325)
346 COG4172 ABC-type uncharacteriz 100.0 6.5E-39 1.4E-43 282.5 18.7 200 7-206 3-226 (534)
347 COG1101 PhnK ABC-type uncharac 100.0 1.2E-38 2.6E-43 261.0 15.5 195 10-205 1-216 (263)
348 COG0488 Uup ATPase components 100.0 1.6E-38 3.6E-43 295.0 18.4 184 7-206 318-504 (530)
349 PLN03073 ABC transporter F fam 100.0 1.5E-38 3.3E-43 305.7 16.8 195 9-206 176-409 (718)
350 KOG0059 Lipid exporter ABCA1 a 100.0 2.2E-38 4.9E-43 311.0 18.2 198 9-206 563-766 (885)
351 TIGR00956 3a01205 Pleiotropic 100.0 3.4E-38 7.4E-43 321.1 18.5 182 23-206 74-279 (1394)
352 COG1134 TagH ABC-type polysacc 100.0 2.4E-37 5.3E-42 257.9 17.3 174 23-209 40-218 (249)
353 COG4778 PhnL ABC-type phosphon 100.0 1.9E-37 4.2E-42 245.9 14.6 198 10-207 4-221 (235)
354 PLN03232 ABC transporter C fam 100.0 2.8E-37 6E-42 316.6 19.9 178 10-204 614-806 (1495)
355 KOG0056 Heavy metal exporter H 100.0 3E-38 6.5E-43 283.5 11.0 192 9-204 536-739 (790)
356 PLN03130 ABC transporter C fam 100.0 3.8E-37 8.2E-42 316.5 20.3 178 9-204 613-806 (1622)
357 TIGR00957 MRP_assoc_pro multi 100.0 3.6E-37 7.8E-42 316.2 20.0 177 10-203 636-827 (1522)
358 COG4167 SapF ABC-type antimicr 100.0 2.3E-37 4.9E-42 248.3 14.4 198 9-207 3-219 (267)
359 KOG0061 Transporter, ABC super 100.0 9.5E-37 2.1E-41 289.0 21.2 187 9-199 24-231 (613)
360 PF00005 ABC_tran: ABC transpo 100.0 1.5E-37 3.2E-42 241.2 11.9 133 26-167 1-137 (137)
361 COG4107 PhnK ABC-type phosphon 100.0 6.6E-37 1.4E-41 244.0 15.6 200 7-206 3-220 (258)
362 PLN03140 ABC transporter G fam 100.0 3.9E-37 8.5E-42 313.3 17.9 181 22-206 177-406 (1470)
363 TIGR01271 CFTR_protein cystic 100.0 1.5E-36 3.3E-41 310.9 20.3 163 23-203 439-613 (1490)
364 cd03270 ABC_UvrA_I The excisio 100.0 3.3E-35 7.2E-40 247.6 17.1 183 18-206 3-206 (226)
365 PTZ00243 ABC transporter; Prov 100.0 2.9E-35 6.4E-40 302.1 19.5 167 21-203 671-847 (1560)
366 COG5265 ATM1 ABC-type transpor 100.0 5.3E-35 1.1E-39 258.8 11.1 191 10-204 262-464 (497)
367 cd03278 ABC_SMC_barmotin Barmo 100.0 1.4E-34 3.1E-39 239.1 12.8 161 23-206 9-183 (197)
368 KOG0054 Multidrug resistance-a 100.0 8E-34 1.7E-38 282.7 17.6 192 8-204 1136-1340(1381)
369 cd03271 ABC_UvrA_II The excisi 100.0 2.7E-33 5.9E-38 240.2 17.6 180 23-203 8-237 (261)
370 cd03272 ABC_SMC3_euk Eukaryoti 100.0 4.4E-33 9.6E-38 236.2 14.6 188 11-206 4-228 (243)
371 COG4138 BtuD ABC-type cobalami 100.0 6E-34 1.3E-38 227.1 6.4 187 10-202 3-196 (248)
372 KOG0054 Multidrug resistance-a 100.0 3.6E-32 7.9E-37 270.9 18.9 181 6-204 514-709 (1381)
373 cd03273 ABC_SMC2_euk Eukaryoti 100.0 4.4E-33 9.6E-38 237.9 10.2 188 11-206 6-236 (251)
374 cd03279 ABC_sbcCD SbcCD and ot 100.0 3.5E-32 7.7E-37 227.1 14.3 183 10-206 5-201 (213)
375 cd03274 ABC_SMC4_euk Eukaryoti 100.0 3.4E-33 7.4E-38 233.3 4.8 173 11-206 6-197 (212)
376 KOG0927 Predicted transporter 100.0 2.7E-32 5.9E-37 247.5 10.5 192 7-212 386-579 (614)
377 COG1129 MglA ABC-type sugar tr 100.0 6.6E-31 1.4E-35 240.2 19.0 216 7-226 260-497 (500)
378 COG4615 PvdE ABC-type sideroph 100.0 3.3E-31 7.1E-36 233.3 14.9 187 9-203 321-514 (546)
379 cd03240 ABC_Rad50 The catalyti 100.0 3.2E-31 7E-36 220.1 12.0 156 28-202 15-187 (204)
380 KOG0062 ATPase component of AB 100.0 6E-31 1.3E-35 237.6 12.9 178 10-205 80-262 (582)
381 COG4178 ABC-type uncharacteriz 100.0 2.3E-30 4.9E-35 240.8 14.4 179 8-200 390-576 (604)
382 KOG0065 Pleiotropic drug resis 100.0 2.3E-30 5E-35 253.9 12.3 176 21-200 802-992 (1391)
383 COG1245 Predicted ATPase, RNas 100.0 4E-29 8.6E-34 223.4 15.4 180 10-205 342-523 (591)
384 KOG0927 Predicted transporter 100.0 2.7E-29 5.8E-34 228.1 14.1 195 10-207 75-288 (614)
385 COG4170 SapD ABC-type antimicr 100.0 2.1E-29 4.6E-34 206.4 11.3 198 9-206 2-227 (330)
386 PRK00635 excinuclease ABC subu 100.0 2.7E-28 5.8E-33 248.6 19.6 192 9-206 599-879 (1809)
387 KOG0066 eIF2-interacting prote 100.0 6.2E-29 1.3E-33 221.5 11.9 180 7-203 583-766 (807)
388 PRK00349 uvrA excinuclease ABC 100.0 7.5E-28 1.6E-32 236.0 19.9 103 100-203 792-898 (943)
389 COG3845 ABC-type uncharacteriz 100.0 1.5E-27 3.3E-32 215.1 19.2 203 4-206 251-471 (501)
390 cd03276 ABC_SMC6_euk Eukaryoti 100.0 1.7E-28 3.6E-33 203.0 10.9 166 24-204 10-182 (198)
391 cd03275 ABC_SMC1_euk Eukaryoti 100.0 1E-28 2.2E-33 210.7 8.8 188 11-206 4-226 (247)
392 KOG0062 ATPase component of AB 99.9 1.7E-27 3.8E-32 215.3 12.7 183 7-205 359-546 (582)
393 TIGR00630 uvra excinuclease AB 99.9 1.4E-26 3E-31 226.7 19.1 104 101-206 791-898 (924)
394 KOG0060 Long-chain acyl-CoA tr 99.9 3.9E-26 8.5E-31 208.9 16.6 182 9-203 432-632 (659)
395 COG1245 Predicted ATPase, RNas 99.9 1.6E-25 3.4E-30 200.4 12.1 166 32-205 96-280 (591)
396 cd03280 ABC_MutS2 MutS2 homolo 99.9 2E-24 4.4E-29 178.6 11.4 133 25-206 16-158 (200)
397 KOG2355 Predicted ABC-type tra 99.9 4.2E-24 9.2E-29 174.6 12.7 192 8-204 11-214 (291)
398 cd03277 ABC_SMC5_euk Eukaryoti 99.9 1.1E-23 2.3E-28 176.2 11.0 76 130-205 118-199 (213)
399 cd03283 ABC_MutS-like MutS-lik 99.9 4.3E-24 9.4E-29 176.8 7.8 140 22-204 13-154 (199)
400 COG2401 ABC-type ATPase fused 99.9 2.8E-23 6E-28 184.4 13.2 165 23-203 396-573 (593)
401 KOG0064 Peroxisomal long-chain 99.9 8.3E-24 1.8E-28 192.0 10.0 177 11-203 482-674 (728)
402 KOG0066 eIF2-interacting prote 99.9 7.6E-24 1.6E-28 189.2 8.4 193 10-206 264-477 (807)
403 cd03241 ABC_RecN RecN ATPase i 99.9 6.4E-23 1.4E-27 177.7 12.7 68 137-206 169-240 (276)
404 cd03239 ABC_SMC_head The struc 99.9 1.1E-22 2.3E-27 165.7 13.1 64 139-202 95-162 (178)
405 cd03227 ABC_Class2 ABC-type Cl 99.9 7.5E-23 1.6E-27 163.9 10.7 131 26-203 11-146 (162)
406 cd03282 ABC_MSH4_euk MutS4 hom 99.9 1.2E-22 2.6E-27 168.7 10.7 144 21-205 14-158 (204)
407 cd03285 ABC_MSH2_euk MutS2 hom 99.9 8.9E-22 1.9E-26 165.5 11.2 139 21-206 15-160 (222)
408 cd03243 ABC_MutS_homologs The 99.8 1.5E-20 3.3E-25 155.6 11.2 137 27-205 20-158 (202)
409 PRK00635 excinuclease ABC subu 99.8 7.2E-20 1.6E-24 187.5 17.0 86 119-204 1679-1768(1809)
410 KOG0065 Pleiotropic drug resis 99.8 1.2E-20 2.7E-25 185.9 10.0 172 23-198 128-321 (1391)
411 cd03242 ABC_RecF RecF is a rec 99.8 1.5E-19 3.2E-24 156.2 11.3 67 135-205 180-255 (270)
412 COG0178 UvrA Excinuclease ATPa 99.8 3.6E-19 7.8E-24 168.6 14.2 86 119-204 802-891 (935)
413 TIGR00630 uvra excinuclease AB 99.8 1.3E-18 2.7E-23 171.0 11.2 85 121-206 469-556 (924)
414 cd03281 ABC_MSH5_euk MutS5 hom 99.8 6.2E-18 1.4E-22 141.4 13.5 136 24-205 17-161 (213)
415 PRK00349 uvrA excinuclease ABC 99.8 1.6E-18 3.5E-23 170.5 11.5 83 121-203 471-556 (943)
416 KOG0063 RNAse L inhibitor, ABC 99.8 3.1E-18 6.7E-23 152.8 11.3 166 19-198 344-517 (592)
417 smart00534 MUTSac ATPase domai 99.8 3.9E-19 8.4E-24 145.4 4.8 126 38-206 1-129 (185)
418 TIGR01069 mutS2 MutS2 family p 99.8 3.2E-18 7E-23 166.1 11.6 152 10-202 295-449 (771)
419 cd03284 ABC_MutS1 MutS1 homolo 99.8 4.3E-18 9.4E-23 142.6 10.6 137 22-205 17-159 (216)
420 TIGR02858 spore_III_AA stage I 99.7 1.8E-17 3.9E-22 143.0 12.9 120 37-200 112-231 (270)
421 cd03287 ABC_MSH3_euk MutS3 hom 99.7 2.7E-16 5.9E-21 132.2 11.3 138 22-203 17-159 (222)
422 PF02463 SMC_N: RecF/RecN/SMC 99.7 7.6E-17 1.7E-21 134.7 7.2 66 138-204 136-205 (220)
423 KOG0063 RNAse L inhibitor, ABC 99.7 1.5E-16 3.2E-21 142.2 9.3 169 34-204 98-279 (592)
424 PTZ00132 GTP-binding nuclear p 99.7 1.1E-16 2.4E-21 133.2 6.3 50 137-186 149-205 (215)
425 PRK00064 recF recombination pr 99.7 2.9E-15 6.4E-20 134.5 15.5 67 136-205 271-346 (361)
426 PRK00409 recombination and DNA 99.6 7.5E-16 1.6E-20 150.0 10.3 138 28-206 318-458 (782)
427 cd00820 PEPCK_HprK Phosphoenol 99.6 1.3E-15 2.8E-20 113.6 5.9 77 22-108 1-77 (107)
428 cd03286 ABC_MSH6_euk MutS6 hom 99.6 2.3E-14 5E-19 120.2 12.7 144 21-206 15-161 (218)
429 PRK08533 flagellar accessory p 99.6 5E-14 1.1E-18 119.1 12.9 148 11-200 8-164 (230)
430 PF13304 AAA_21: AAA domain; P 99.5 1.8E-14 3.9E-19 119.2 8.2 67 135-201 233-302 (303)
431 COG3910 Predicted ATPase [Gene 99.5 2.6E-13 5.7E-18 109.9 11.7 68 132-200 123-190 (233)
432 PRK06793 fliI flagellum-specif 99.5 1.5E-13 3.2E-18 125.3 10.6 156 10-206 130-294 (432)
433 TIGR00618 sbcc exonuclease Sbc 99.5 8.1E-14 1.8E-18 140.2 9.5 78 129-206 941-1028(1042)
434 cd01128 rho_factor Transcripti 99.5 2.2E-14 4.9E-19 122.5 4.4 160 31-204 11-200 (249)
435 cd01124 KaiC KaiC is a circadi 99.5 2.9E-13 6.2E-18 109.7 9.8 77 124-200 57-142 (187)
436 PHA02562 46 endonuclease subun 99.5 1.4E-13 3.1E-18 129.7 7.9 66 134-201 464-540 (562)
437 TIGR00606 rad50 rad50. This fa 99.4 3E-13 6.5E-18 138.7 9.7 79 135-213 1196-1285(1311)
438 TIGR00634 recN DNA repair prot 99.4 3.2E-13 6.9E-18 127.8 8.7 69 137-207 439-511 (563)
439 PRK10246 exonuclease subunit S 99.4 4.4E-13 9.5E-18 134.7 9.5 72 132-203 943-1022(1047)
440 cd01120 RecA-like_NTPases RecA 99.4 6.8E-13 1.5E-17 104.0 8.6 132 38-203 1-142 (165)
441 PRK10869 recombination and rep 99.4 6.7E-13 1.4E-17 125.2 8.3 69 138-208 430-502 (553)
442 PRK03918 chromosome segregatio 99.4 1.1E-12 2.3E-17 129.9 9.1 73 133-206 783-861 (880)
443 PRK07721 fliI flagellum-specif 99.4 2E-12 4.3E-17 118.5 9.7 155 22-200 145-318 (438)
444 PRK13695 putative NTPase; Prov 99.4 7.9E-13 1.7E-17 106.8 6.3 62 133-198 73-136 (174)
445 TIGR03238 dnd_assoc_3 dnd syst 99.4 5.6E-13 1.2E-17 122.0 4.5 52 24-77 20-72 (504)
446 TIGR02788 VirB11 P-type DNA tr 99.3 1.3E-11 2.9E-16 108.6 10.4 117 29-199 137-254 (308)
447 TIGR02168 SMC_prok_B chromosom 99.3 4.6E-12 9.9E-17 127.8 8.3 73 132-206 1083-1159(1179)
448 PRK01156 chromosome segregatio 99.3 9.8E-12 2.1E-16 123.4 9.4 72 134-206 797-877 (895)
449 smart00382 AAA ATPases associa 99.3 4.8E-10 1E-14 84.5 15.1 118 35-197 1-125 (148)
450 PRK13830 conjugal transfer pro 99.2 1E-10 2.2E-15 115.1 13.6 49 154-202 650-699 (818)
451 PRK06067 flagellar accessory p 99.2 1.3E-10 2.9E-15 98.1 10.0 141 32-200 21-167 (234)
452 PRK06995 flhF flagellar biosyn 99.2 1.4E-10 3E-15 107.3 10.0 145 25-196 245-400 (484)
453 TIGR02169 SMC_prok_A chromosom 99.2 5.3E-11 1.1E-15 120.4 7.6 72 133-206 1069-1144(1164)
454 cd01131 PilT Pilus retraction 99.1 7.4E-10 1.6E-14 91.5 12.3 109 38-201 3-112 (198)
455 PRK02224 chromosome segregatio 99.1 1.3E-10 2.8E-15 115.3 8.3 71 135-206 778-861 (880)
456 TIGR00611 recf recF protein. A 99.1 1.3E-10 2.9E-15 104.6 6.7 64 137-203 274-346 (365)
457 TIGR02655 circ_KaiC circadian 99.1 8.9E-12 1.9E-16 116.0 -2.2 149 32-200 17-169 (484)
458 COG0178 UvrA Excinuclease ATPa 99.1 8.1E-10 1.8E-14 105.8 10.8 83 122-204 464-549 (935)
459 PRK06002 fliI flagellum-specif 99.1 7.3E-10 1.6E-14 101.5 9.3 86 9-95 138-230 (450)
460 cd01130 VirB11-like_ATPase Typ 99.0 2.6E-10 5.7E-15 93.2 5.3 80 27-110 16-97 (186)
461 PRK13891 conjugal transfer pro 99.0 8.6E-09 1.9E-13 102.0 16.8 55 149-203 680-735 (852)
462 cd01125 repA Hexameric Replica 99.0 1.5E-09 3.4E-14 91.9 9.7 47 152-199 107-160 (239)
463 PRK07196 fliI flagellum-specif 99.0 5.4E-10 1.2E-14 102.1 6.7 90 22-112 142-239 (434)
464 PRK05399 DNA mismatch repair p 99.0 2.6E-09 5.6E-14 105.6 11.9 134 23-204 595-735 (854)
465 cd02023 UMPK Uridine monophosp 99.0 2.6E-10 5.6E-15 93.8 4.0 113 38-172 1-114 (198)
466 PRK13898 type IV secretion sys 99.0 9.2E-09 2E-13 101.3 15.2 52 152-203 638-690 (800)
467 COG0419 SbcC ATPase involved i 99.0 1.8E-09 4E-14 107.5 9.0 68 134-201 811-886 (908)
468 TIGR02680 conserved hypothetic 98.9 1.7E-09 3.8E-14 111.3 7.8 65 131-198 1240-1316(1353)
469 TIGR01420 pilT_fam pilus retra 98.9 2.7E-08 5.8E-13 88.9 12.4 113 34-201 120-233 (343)
470 TIGR02903 spore_lon_C ATP-depe 98.8 8.8E-09 1.9E-13 98.6 8.1 110 35-183 174-291 (615)
471 PRK09825 idnK D-gluconate kina 98.8 4.7E-09 1E-13 85.3 4.8 68 35-108 2-69 (176)
472 PF00488 MutS_V: MutS domain V 98.8 1.6E-07 3.6E-12 79.7 13.8 50 154-203 120-171 (235)
473 cd00009 AAA The AAA+ (ATPases 98.8 2.2E-08 4.8E-13 76.1 7.7 56 144-200 72-132 (151)
474 PRK07594 type III secretion sy 98.8 8.2E-09 1.8E-13 94.4 6.1 63 10-73 129-192 (433)
475 PRK09862 putative ATP-dependen 98.8 6.4E-09 1.4E-13 96.9 4.8 62 13-74 187-248 (506)
476 PRK13873 conjugal transfer ATP 98.7 1.7E-07 3.7E-12 92.5 12.9 51 153-203 632-683 (811)
477 PLN03210 Resistant to P. syrin 98.7 4.1E-08 9E-13 100.1 8.8 44 29-72 200-244 (1153)
478 cd01136 ATPase_flagellum-secre 98.7 2.8E-08 6E-13 88.0 6.4 52 21-73 55-106 (326)
479 PRK08149 ATP synthase SpaL; Va 98.7 3E-08 6.4E-13 90.7 6.4 55 21-76 137-194 (428)
480 TIGR03881 KaiC_arch_4 KaiC dom 98.7 5.8E-09 1.2E-13 87.6 1.0 39 32-71 16-56 (229)
481 PRK06315 type III secretion sy 98.6 5.1E-08 1.1E-12 89.5 6.7 49 22-71 151-200 (442)
482 PF13555 AAA_29: P-loop contai 98.6 4.1E-08 8.9E-13 66.0 4.3 39 26-64 12-51 (62)
483 PRK14079 recF recombination pr 98.6 4.3E-08 9.2E-13 87.9 5.6 61 137-200 262-331 (349)
484 PRK10078 ribose 1,5-bisphospho 98.6 5.5E-08 1.2E-12 79.4 5.7 38 36-76 2-39 (186)
485 TIGR00554 panK_bact pantothena 98.6 5.1E-08 1.1E-12 85.1 5.7 74 36-112 62-137 (290)
486 PRK09270 nucleoside triphospha 98.6 6.4E-08 1.4E-12 81.6 6.0 72 34-111 31-106 (229)
487 PRK09099 type III secretion sy 98.6 5.8E-08 1.3E-12 89.1 6.0 53 21-74 149-201 (441)
488 TIGR00152 dephospho-CoA kinase 98.6 3.5E-08 7.6E-13 80.6 3.6 85 142-228 61-147 (188)
489 TIGR03496 FliI_clade1 flagella 98.6 1E-07 2.2E-12 87.0 6.7 62 11-73 112-174 (411)
490 TIGR02546 III_secr_ATP type II 98.6 6E-08 1.3E-12 88.9 5.0 51 22-73 132-182 (422)
491 PF13558 SbcCD_C: Putative exo 98.6 9.7E-08 2.1E-12 69.2 5.1 51 133-183 27-90 (90)
492 PRK00300 gmk guanylate kinase; 98.6 4.7E-08 1E-12 80.5 3.8 28 34-61 3-30 (205)
493 TIGR03498 FliI_clade3 flagella 98.6 9E-08 2E-12 87.4 5.9 54 21-75 126-179 (418)
494 PRK10416 signal recognition pa 98.6 7.1E-08 1.5E-12 85.4 4.8 75 34-108 112-191 (318)
495 TIGR01026 fliI_yscN ATPase Fli 98.6 9.1E-08 2E-12 88.0 5.5 53 21-74 149-201 (440)
496 TIGR03497 FliI_clade2 flagella 98.5 1.3E-07 2.8E-12 86.3 6.5 53 21-74 123-175 (413)
497 TIGR00767 rho transcription te 98.5 1.8E-07 3.9E-12 84.7 6.9 54 9-62 129-194 (415)
498 PRK09183 transposase/IS protei 98.5 9E-07 2E-11 76.2 10.4 36 25-61 92-127 (259)
499 TIGR02322 phosphon_PhnN phosph 98.5 4E-07 8.6E-12 73.5 7.3 33 36-69 1-33 (179)
500 TIGR00235 udk uridine kinase. 98.5 8E-08 1.7E-12 79.7 3.2 29 34-62 4-32 (207)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-62 Score=400.15 Aligned_cols=198 Identities=29% Similarity=0.416 Sum_probs=181.2
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
++|+++||+|+||+..+|++||++|++||+++|+||||||||||||||+||.+|++|+|+++|+++.........++++|
T Consensus 1 ~mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vG 80 (240)
T COG1126 1 MMIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVG 80 (240)
T ss_pred CeEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcC
Confidence 47999999999999999999999999999999999999999999999999999999999999988754333456788999
Q ss_pred EeecccccCCCCCHHHhHHHHHHh-cC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEVL-EG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLL 162 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~~-~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illl 162 (229)
+++|+.++||++||.||+.+.... .+ .++.+.++|+++||.+..+.+|.+|||||||||+|||||+++|+++|+
T Consensus 81 mVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLF 160 (240)
T COG1126 81 MVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLF 160 (240)
T ss_pred eecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEee
Confidence 999999999999999999876532 11 123456789999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 163 DEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 163 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|||||+|||+...++.+.+++++++|.|.|+|||++.++.++.|
T Consensus 161 DEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~Vad 204 (240)
T COG1126 161 DEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVAD 204 (240)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhh
Confidence 99999999999999999999999999999999999999999864
No 2
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.4e-58 Score=382.73 Aligned_cols=191 Identities=31% Similarity=0.414 Sum_probs=173.1
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
.++++++|++.|++..+|+|+||+|.+||+++|+||||||||||||+|+|+.+|++|+|.++|+++.. ....++
T Consensus 2 ~~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~------p~~~~~ 75 (248)
T COG1116 2 ALLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTG------PGPDIG 75 (248)
T ss_pred ceEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCC------CCCCEE
Confidence 46899999999999999999999999999999999999999999999999999999999999998843 235789
Q ss_pred EeecccccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEe
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLD 163 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlD 163 (229)
|++|++.++|..||.||+.++....+ ..+.+.++++.+||.++.+++|++|||||||||+|||||+.+|++|+||
T Consensus 76 ~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlD 155 (248)
T COG1116 76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLD 155 (248)
T ss_pred EEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999999999999998765432 1235678999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHH-HhCCcEEEEEeCChhhHHhhh
Q 027067 164 EPSVALDYDGVRLLEYIIAEH-RKKGGIVIVATHLPIQIEDAM 205 (229)
Q Consensus 164 EPt~~LD~~~~~~l~~~l~~~-~~~g~tii~vtH~~~~~~~~~ 205 (229)
|||++||..+++.+.+.+.++ ++.++||++||||.+++-...
T Consensus 156 EPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~Ls 198 (248)
T COG1116 156 EPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLA 198 (248)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhh
Confidence 999999999999998877774 666899999999988877654
No 3
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-57 Score=379.14 Aligned_cols=196 Identities=32% Similarity=0.427 Sum_probs=179.5
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW 89 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 89 (229)
|++++||+|+|+++.+++|+||+|++||+++++|||||||||+||+|+++++|++|+|+++|+++...... ..++++||
T Consensus 1 MI~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~-~LRr~IGY 79 (309)
T COG1125 1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPV-ELRRKIGY 79 (309)
T ss_pred CceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHH-HHHHhhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999876653 56789999
Q ss_pred eecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCC--hhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067 90 LSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLG--RLAKEKARMLSMGQRKRLQLARLLAIDRPIWLL 162 (229)
Q Consensus 90 ~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~--~~~~~~~~~LSgGqkqRv~lAral~~~p~illl 162 (229)
+-|+..+||++||.||+.+...+.++ ..++.++++.+||+ ++.+++|++|||||+|||.+||||+.+|+++||
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLM 159 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLM 159 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEee
Confidence 99999999999999999987666543 24567899999996 589999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067 163 DEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 163 DEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~ 206 (229)
||||++|||.++..+.+.+.++++ -|+|||+||||++++-...|
T Consensus 160 DEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLad 204 (309)
T COG1125 160 DEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLAD 204 (309)
T ss_pred cCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhc
Confidence 999999999999999988888755 49999999999999887653
No 4
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-56 Score=382.46 Aligned_cols=197 Identities=27% Similarity=0.375 Sum_probs=180.8
Q ss_pred cEEEEeEEEEeCC-----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCch--hhh
Q 027067 10 RLLLKNVSCMRNA-----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI--FHQ 82 (229)
Q Consensus 10 ~l~l~~l~~~~~~-----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~--~~~ 82 (229)
|+++++|+|.|.. ..+|+||||+|++||++||+|.||||||||+|+|++|.+|++|+|.++|+++...+. .++
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 6899999999975 579999999999999999999999999999999999999999999999999876542 345
Q ss_pred hhhcceEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCC
Q 027067 83 YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDR 157 (229)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 157 (229)
.++++++++|+++++...||++|++|+....+. +.++.++++.+||.+..+++|.+|||||||||+|||||+.+|
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P 160 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNP 160 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCC
Confidence 788999999999999999999999998776543 245678999999999999999999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067 158 PIWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~ 206 (229)
+|||+|||||+|||++.+.+.++|+++.+ .|.||++|||.++.+.++||
T Consensus 161 ~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~ 210 (339)
T COG1135 161 KILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICD 210 (339)
T ss_pred CEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhh
Confidence 99999999999999999999999999755 49999999999999999986
No 5
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-56 Score=378.05 Aligned_cols=194 Identities=29% Similarity=0.426 Sum_probs=172.4
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
++++++|++++|++.++|+||||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|++..... .+..++
T Consensus 3 ~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~----~~~~Ig 78 (254)
T COG1121 3 PMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRR----KRLRIG 78 (254)
T ss_pred cEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccc----cCCeEE
Confidence 5799999999999768999999999999999999999999999999999999999999999998875431 235799
Q ss_pred EeecccccC--CCCCHHHhHHHHHHhc---------CccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCC
Q 027067 89 WLSLKDAVK--EKFTVLDNVQWFEVLE---------GKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDR 157 (229)
Q Consensus 89 ~~~~~~~~~--~~~tv~e~l~~~~~~~---------~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 157 (229)
|+||...+. ...||+|.+..+.... ...+.+.++|+++|+.++.++.+.+|||||+|||.|||||+++|
T Consensus 79 YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p 158 (254)
T COG1121 79 YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNP 158 (254)
T ss_pred EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCC
Confidence 999976443 3459999987642211 11356788999999999999999999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 158 PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
++|+|||||+|+|+.++..++++|++++++|+||++||||++.+.+.+|
T Consensus 159 ~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D 207 (254)
T COG1121 159 DLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFD 207 (254)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCC
Confidence 9999999999999999999999999999889999999999999999764
No 6
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.5e-55 Score=367.46 Aligned_cols=194 Identities=32% Similarity=0.459 Sum_probs=170.3
Q ss_pred cEEEEeEEEEeCC----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchh---hh
Q 027067 10 RLLLKNVSCMRNA----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF---HQ 82 (229)
Q Consensus 10 ~l~l~~l~~~~~~----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~---~~ 82 (229)
+++++||++.|+. ..+|+++||+|++||+++|+|||||||||||++|.|+.+|++|+|+++|+++...+.. ..
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~ 80 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKL 80 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHH
Confidence 4789999999853 4799999999999999999999999999999999999999999999999998865432 22
Q ss_pred hhhcceEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhc-CCCCCCChhHHHHHHHHHHHhcC
Q 027067 83 YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAK-EKARMLSMGQRKRLQLARLLAID 156 (229)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~-~~~~~LSgGqkqRv~lAral~~~ 156 (229)
.+..+||++|+.++.+.+||.||+.++..+... .....++++.+|+.+..+ ++|.+|||||||||+|||||+.+
T Consensus 81 R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~ 160 (226)
T COG1136 81 RRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINN 160 (226)
T ss_pred HHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcC
Confidence 456799999999999999999999986554432 234567788899987666 88999999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHh
Q 027067 157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIED 203 (229)
Q Consensus 157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~ 203 (229)
|+++|+||||.+||.++.+.+.+++.++.++ |+|||+||||+..+..
T Consensus 161 P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~ 208 (226)
T COG1136 161 PKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKY 208 (226)
T ss_pred CCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHh
Confidence 9999999999999999999999999998654 8999999999876653
No 7
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=7.1e-56 Score=376.04 Aligned_cols=197 Identities=32% Similarity=0.407 Sum_probs=179.0
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
++|+++||++.|+++++|+|+||++++||+++|+||||||||||||+|+|+++|.+|+|+++|+++...+. ....+.++
T Consensus 1 ~~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~-kelAk~ia 79 (258)
T COG1120 1 MMLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSP-KELAKKLA 79 (258)
T ss_pred CeeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCH-HHHhhhEE
Confidence 36899999999999999999999999999999999999999999999999999999999999999987654 45677899
Q ss_pred EeecccccCCCCCHHHhHHHHHHhc----C-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCe
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEVLE----G-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPI 159 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~~~----~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~i 159 (229)
|+||.+...+.+||+|.+.++.... . +.+.+.++++.+|+.++.++.+.+|||||||||.|||||+++|++
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~i 159 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPI 159 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCE
Confidence 9999998889999999988753211 1 112456789999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEeCChhhHHhhhc
Q 027067 160 WLLDEPSVALDYDGVRLLEYIIAEHR-KKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 160 lllDEPt~~LD~~~~~~l~~~l~~~~-~~g~tii~vtH~~~~~~~~~~ 206 (229)
|||||||++||..++..++++++++. ++|.|||+|+||++.+...+|
T Consensus 160 LLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad 207 (258)
T COG1120 160 LLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYAD 207 (258)
T ss_pred EEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCC
Confidence 99999999999999999999999987 559999999999999999887
No 8
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.5e-55 Score=365.65 Aligned_cols=200 Identities=32% Similarity=0.424 Sum_probs=179.8
Q ss_pred CCCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhh--hhh
Q 027067 7 PLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFH--QYK 84 (229)
Q Consensus 7 ~~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~--~~~ 84 (229)
+.+.+++++|+++||++.+++||||+|++||+++|+||||||||||||+|.|+++|++|+|+++|+++.+.+... ..+
T Consensus 5 ~~~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 5 PEPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred CcceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999999988765433 346
Q ss_pred hcceEeecccccCCCCCHHHhHHHHHHhcC-c-c----ccHHHHHHHhCCChh-hcCCCCCCChhHHHHHHHHHHHhcCC
Q 027067 85 LQLNWLSLKDAVKEKFTVLDNVQWFEVLEG-K-Q----GNSLPALELMGLGRL-AKEKARMLSMGQRKRLQLARLLAIDR 157 (229)
Q Consensus 85 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~-~-~----~~~~~~l~~~~l~~~-~~~~~~~LSgGqkqRv~lAral~~~p 157 (229)
+++|+++|+-++|..+||+||+.|+..... . + +.+...++.+||... .+++|++|||||++||+||||++.+|
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdP 164 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDP 164 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCC
Confidence 679999999999999999999998654322 1 1 224456889999866 89999999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 158 PIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
+++++||||+||||.+...+.+++.++++. |.|+++||||++.+..++|
T Consensus 165 ell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~D 214 (263)
T COG1127 165 ELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIAD 214 (263)
T ss_pred CEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhc
Confidence 999999999999999999999999998766 8999999999999999886
No 9
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-55 Score=388.30 Aligned_cols=195 Identities=34% Similarity=0.429 Sum_probs=178.6
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
+.++++||+|+|++..+++|+||+|++||+++|+||||||||||||+|+|+..|++|+|.++|++++..++ .++.++
T Consensus 4 ~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp---~kR~ig 80 (352)
T COG3842 4 PALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPP---EKRPIG 80 (352)
T ss_pred ceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh---hhcccc
Confidence 57999999999999999999999999999999999999999999999999999999999999999988653 567899
Q ss_pred EeecccccCCCCCHHHhHHHHHHhcCc------cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEVLEGK------QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLL 162 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~------~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illl 162 (229)
+++|+.++||++||.||+.|+....+. ..++.++++.+++.++.+++|++|||||||||+|||||+.+|++|||
T Consensus 81 ~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLL 160 (352)
T COG3842 81 MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLL 160 (352)
T ss_pred eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhh
Confidence 999999999999999999998764331 13567899999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHH-HhCCcEEEEEeCChhhHHhhhc
Q 027067 163 DEPSVALDYDGVRLLEYIIAEH-RKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 163 DEPt~~LD~~~~~~l~~~l~~~-~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|||+|+||.+-++.+..-++++ ++.|.|.|+||||.+++-...|
T Consensus 161 DEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msD 205 (352)
T COG3842 161 DEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSD 205 (352)
T ss_pred cCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcc
Confidence 9999999999999888878776 4559999999999998877654
No 10
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.8e-55 Score=384.29 Aligned_cols=194 Identities=35% Similarity=0.461 Sum_probs=177.8
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
.+|+++||+|.||+..+++++||+|++||+++|+||||||||||||+|+|+.+|++|+|+++|++++...+ ..++++
T Consensus 2 ~~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P---~~R~ia 78 (338)
T COG3839 2 AELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPP---EKRGIA 78 (338)
T ss_pred cEEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh---hHCCEE
Confidence 36999999999998779999999999999999999999999999999999999999999999999988654 357899
Q ss_pred EeecccccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEe
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLD 163 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlD 163 (229)
+++|+..+||++||+||+.|+....+ .++++.++.+.++++++++++|.+|||||||||+|||||+.+|+++|||
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~D 158 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLD 158 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEec
Confidence 99999999999999999999877653 2356778999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhh
Q 027067 164 EPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAM 205 (229)
Q Consensus 164 EPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~ 205 (229)
||+|+||...+..+...+++++++ |.|+|+||||..++....
T Consensus 159 EPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtla 201 (338)
T COG3839 159 EPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLA 201 (338)
T ss_pred CchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhC
Confidence 999999999999999888887654 899999999988876654
No 11
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.5e-54 Score=348.28 Aligned_cols=195 Identities=29% Similarity=0.380 Sum_probs=178.0
Q ss_pred cEEEEeEEEEeCC-eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCch--hhhhhhc
Q 027067 10 RLLLKNVSCMRNA-QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI--FHQYKLQ 86 (229)
Q Consensus 10 ~l~l~~l~~~~~~-~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~--~~~~~~~ 86 (229)
||+++||+|.|++ +++|+||||+|++||++-|+||||||||||||+|++..+|++|+|+++|.+++.... ....+++
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 6899999999954 569999999999999999999999999999999999999999999999999976432 2346889
Q ss_pred ceEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEE
Q 027067 87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWL 161 (229)
Q Consensus 87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ill 161 (229)
+|.++|+..+.+..||+||++|.....+. ..++.++|+.+||.+..+..|.+|||||||||+||||++.+|++||
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLl 160 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLL 160 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEe
Confidence 99999999999999999999997665432 3456789999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067 162 LDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA 204 (229)
Q Consensus 162 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~ 204 (229)
.||||.+|||.....+++++.++...|+||+|+|||.+.+..+
T Consensus 161 ADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 161 ADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRM 203 (223)
T ss_pred ecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhc
Confidence 9999999999999999999999999999999999999887763
No 12
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1e-53 Score=373.00 Aligned_cols=196 Identities=30% Similarity=0.468 Sum_probs=181.5
Q ss_pred CcEEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 9 PRLLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 9 ~~l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
..++++||+++|+ ++.+|+||||+|++|+++||+||||||||||+|+|+|+.+|++|+|.++|.+.... ....++++
T Consensus 3 ~~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~--~~~~~~~i 80 (293)
T COG1131 3 EVIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE--PAKVRRRI 80 (293)
T ss_pred ceeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC--HHHHHhhe
Confidence 3588999999999 69999999999999999999999999999999999999999999999999998654 24567789
Q ss_pred eEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLL 162 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illl 162 (229)
+|++|++.+++.+|++||+.|+..++.. ..++.++++.++|.+..++++.+||+|||||++||+||+.+|++|||
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliL 160 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLIL 160 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999999999998877653 24577899999998877889999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEeCChhhHHhhhc
Q 027067 163 DEPSVALDYDGVRLLEYIIAEHRKKG-GIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 163 DEPt~~LD~~~~~~l~~~l~~~~~~g-~tii~vtH~~~~~~~~~~ 206 (229)
||||+|||+.++..++++|+.++++| .||+++||.+++++..||
T Consensus 161 DEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d 205 (293)
T COG1131 161 DEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCD 205 (293)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCC
Confidence 99999999999999999999999887 799999999999999886
No 13
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=3.5e-53 Score=353.82 Aligned_cols=197 Identities=30% Similarity=0.406 Sum_probs=173.6
Q ss_pred cEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchh--hhhhh
Q 027067 10 RLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF--HQYKL 85 (229)
Q Consensus 10 ~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~--~~~~~ 85 (229)
+++++|++++|++ +++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...... ..+++
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 5899999999964 4799999999999999999999999999999999999999999999999987543211 12456
Q ss_pred cceEeecccccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeE
Q 027067 86 QLNWLSLKDAVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIW 160 (229)
Q Consensus 86 ~~~~~~~~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~il 160 (229)
.++|++|++.+++.+|+.||+.+...... ...++.++++.+++.+..++++.+|||||||||+|||||+.+|++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLL 160 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 79999999999999999999987543221 1234567899999998899999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 161 LLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 161 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
||||||++||+.+++.+.+++.+++++|.|||++|||++++..++|
T Consensus 161 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d 206 (216)
T TIGR00960 161 LADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRH 206 (216)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence 9999999999999999999999987778999999999999988776
No 14
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=4.3e-53 Score=371.26 Aligned_cols=197 Identities=27% Similarity=0.401 Sum_probs=178.8
Q ss_pred CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
.++++++||+++|+++.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|.++.... ...++.+
T Consensus 5 ~~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~--~~~~~~i 82 (306)
T PRK13537 5 VAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA--RHARQRV 82 (306)
T ss_pred CceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch--HHHHhcE
Confidence 36899999999999999999999999999999999999999999999999999999999999999986543 2356789
Q ss_pred eEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLL 162 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illl 162 (229)
+|++|++.+++.+|+.||+.++...++. ..++.++++.+++.+..++++.+||+|||||++||+||+.+|++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllL 162 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVL 162 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 9999999999999999999876654321 12345788999999899999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 163 DEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 163 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
||||+|||+.+++.+++++++++++|+|||++||++++++.+||
T Consensus 163 DEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d 206 (306)
T PRK13537 163 DEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCD 206 (306)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCC
Confidence 99999999999999999999998789999999999999999875
No 15
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.3e-54 Score=366.12 Aligned_cols=194 Identities=29% Similarity=0.391 Sum_probs=177.3
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCE---eCCCCchhhhhhhc
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGH---DITQSGIFHQYKLQ 86 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~---~~~~~~~~~~~~~~ 86 (229)
+++++|+++.|+...+++|||++|+.||.+|++||||||||||||+|+|++.|++|.|.++|+ |.++. ....++
T Consensus 2 ~i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~---~~~~R~ 78 (345)
T COG1118 2 SIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNL---AVRDRK 78 (345)
T ss_pred ceeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhcc---chhhcc
Confidence 689999999999999999999999999999999999999999999999999999999999999 55442 334578
Q ss_pred ceEeecccccCCCCCHHHhHHHHHHhcC-------ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCe
Q 027067 87 LNWLSLKDAVKEKFTVLDNVQWFEVLEG-------KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPI 159 (229)
Q Consensus 87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~-------~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~i 159 (229)
+||++|+..+|+++||.|||+|+....+ ...++.++|+.++|+.+.+++|.+|||||||||+|||||+.+|++
T Consensus 79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~v 158 (345)
T COG1118 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKV 158 (345)
T ss_pred eeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCe
Confidence 9999999999999999999999875431 124567889999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 160 WLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 160 lllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
|||||||++||..-+..+...|+++.++ |.|+++||||.+++.+.+|
T Consensus 159 LLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~lad 206 (345)
T COG1118 159 LLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELAD 206 (345)
T ss_pred EeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcc
Confidence 9999999999999999999999998766 9999999999999988764
No 16
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-52 Score=354.52 Aligned_cols=196 Identities=29% Similarity=0.418 Sum_probs=173.0
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCch--hhhhhhcce
Q 027067 11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI--FHQYKLQLN 88 (229)
Q Consensus 11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~--~~~~~~~~~ 88 (229)
|+++||+++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++..... ...++..++
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 80 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMG 80 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceE
Confidence 578999999998899999999999999999999999999999999999999999999999998865332 123456799
Q ss_pred EeecccccCCCCCHHHhHHHHHHhc-C-c----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEVLE-G-K----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLL 162 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~~~-~-~----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illl 162 (229)
|++|++.+++.+|+.||+.+..... . . ...+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||
T Consensus 81 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llll 160 (235)
T cd03261 81 MLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLY 160 (235)
T ss_pred EEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 9999999999999999998753321 1 1 12356789999999888999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 163 DEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 163 DEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
||||++||+.+++.+.+++++++++ |+|||++||+++++...+|
T Consensus 161 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d 205 (235)
T cd03261 161 DEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIAD 205 (235)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcC
Confidence 9999999999999999999998764 8999999999999988775
No 17
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=1.6e-52 Score=372.26 Aligned_cols=197 Identities=24% Similarity=0.343 Sum_probs=175.2
Q ss_pred cEEEEeEEEEeCC----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchh--hhh
Q 027067 10 RLLLKNVSCMRNA----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF--HQY 83 (229)
Q Consensus 10 ~l~l~~l~~~~~~----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~--~~~ 83 (229)
||+++||+++|++ .++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...... ...
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 5899999999952 4799999999999999999999999999999999999999999999999998764321 224
Q ss_pred hhcceEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCC
Q 027067 84 KLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRP 158 (229)
Q Consensus 84 ~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 158 (229)
++.++|++|+..+++..||+||+.++....+. ..++.++++.+|+.+..++++.+|||||||||+|||||+.+|+
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~ 160 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK 160 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 56899999999999999999999886543221 2345688999999999999999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 159 IWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 159 illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
+|||||||++||+.+++.+.+++++++++ |.|||++||+++.+.+++|
T Consensus 161 iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d 209 (343)
T TIGR02314 161 VLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICD 209 (343)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999999999998765 8999999999999988774
No 18
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.7e-53 Score=350.55 Aligned_cols=201 Identities=31% Similarity=0.435 Sum_probs=179.3
Q ss_pred CcEEEEeEEEEe-CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCc--hhhhhhh
Q 027067 9 PRLLLKNVSCMR-NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG--IFHQYKL 85 (229)
Q Consensus 9 ~~l~l~~l~~~~-~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~--~~~~~~~ 85 (229)
.+|+++||++.| +++++|++|||+|++||+++|+||||||||||||+|+|+..|++|+|.++|.++.... ..+++++
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 479999999999 8899999999999999999999999999999999999999999999999999887643 2456788
Q ss_pred cceEeecccccCCCCCHHHhHHHHHH--------hcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHH
Q 027067 86 QLNWLSLKDAVKEKFTVLDNVQWFEV--------LEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARL 152 (229)
Q Consensus 86 ~~~~~~~~~~~~~~~tv~e~l~~~~~--------~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAra 152 (229)
++||++|++++.+.++|++|+..+.. +.+ ....+.++|+++|+.+...++..+|||||+|||+||||
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARa 161 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARA 161 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHH
Confidence 99999999999999999999975321 111 12345678999999999999999999999999999999
Q ss_pred HhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEeCChhhHHhhhccCC
Q 027067 153 LAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHR-KKGGIVIVATHLPIQIEDAMNLRL 209 (229)
Q Consensus 153 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~-~~g~tii~vtH~~~~~~~~~~~~~ 209 (229)
|+++|+++|.|||+++|||.+.+.+++.+++.. ++|.|||++.|+++.+.+.++--+
T Consensus 162 L~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Rii 219 (258)
T COG3638 162 LVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRII 219 (258)
T ss_pred HhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhhe
Confidence 999999999999999999999999999999875 458999999999999999886444
No 19
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-52 Score=373.68 Aligned_cols=194 Identities=25% Similarity=0.372 Sum_probs=175.7
Q ss_pred cEEEEeEEEEe-CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 10 RLLLKNVSCMR-NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 10 ~l~l~~l~~~~-~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
+|+++||+++| +++.+|+|+||+|++||+++|+||||||||||||+|+|+.+|++|+|+++|+++..... .++.++
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~---~~r~ig 79 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEP---ADRDIA 79 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH---HHCCEE
Confidence 69999999999 78899999999999999999999999999999999999999999999999999876432 346899
Q ss_pred EeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEe
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLD 163 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlD 163 (229)
|++|++.+++++||+||+.+.....+. ..++.++++.+++.++.++++.+|||||||||+|||||+.+|++||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLD 159 (356)
T PRK11650 80 MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFD 159 (356)
T ss_pred EEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999999999999999987543221 234568899999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 164 EPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 164 EPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
|||++||+..++.+.+.++++.++ |.|+|+||||++++...+|
T Consensus 160 EP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D 203 (356)
T PRK11650 160 EPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLAD 203 (356)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 999999999999999999988665 8999999999999988764
No 20
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=3.4e-52 Score=347.19 Aligned_cols=198 Identities=28% Similarity=0.340 Sum_probs=174.5
Q ss_pred cEEEEeEEEEe-CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchh--hhhhhc
Q 027067 10 RLLLKNVSCMR-NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF--HQYKLQ 86 (229)
Q Consensus 10 ~l~l~~l~~~~-~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~--~~~~~~ 86 (229)
||+++|++++| +++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...... ..++..
T Consensus 1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 58999999999 567899999999999999999999999999999999999999999999999988653221 124567
Q ss_pred ceEeecccccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEE
Q 027067 87 LNWLSLKDAVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWL 161 (229)
Q Consensus 87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ill 161 (229)
++|++|++.+++..|+.||+.+...... ....+.++++.+++.+..++.+.+|||||||||+|||||+.+|++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll 160 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLL 160 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEE
Confidence 9999999999988999999987543221 12345678999999888899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067 162 LDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 162 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~ 207 (229)
|||||++||+.+++.+.+++++++++|+|||++||+++++...+|.
T Consensus 161 LDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~ 206 (214)
T TIGR02673 161 ADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHR 206 (214)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCE
Confidence 9999999999999999999999877789999999999999887763
No 21
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.4e-53 Score=350.14 Aligned_cols=198 Identities=27% Similarity=0.364 Sum_probs=174.6
Q ss_pred CcEEEEeEEEEeCCee----eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhh
Q 027067 9 PRLLLKNVSCMRNAQQ----ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK 84 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~----iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~ 84 (229)
++++++|+++.|+.+. +|++|||+|.+||++||+|+||||||||.|+|+|+.+|++|+|+++|+++........+.
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~ 81 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc
Confidence 5799999999998877 999999999999999999999999999999999999999999999998876643333456
Q ss_pred hcceEeeccc--ccCCCCCHHHhHHHHHHhc---CccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHHhcCCC
Q 027067 85 LQLNWLSLKD--AVKEKFTVLDNVQWFEVLE---GKQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARLLAIDRP 158 (229)
Q Consensus 85 ~~~~~~~~~~--~~~~~~tv~e~l~~~~~~~---~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~ 158 (229)
+.+.+++|++ ++.|..||.+-+.-..... ..+.++.++++.+||. .+++++|++|||||+|||||||||+.+|+
T Consensus 82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~Pk 161 (252)
T COG1124 82 RPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPK 161 (252)
T ss_pred cceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCC
Confidence 6788999986 6888999998876544321 1234478899999995 77899999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 159 IWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 159 illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
+||+|||||+||...+..+++++.+++++ +.|+|+||||+..++..||
T Consensus 162 lLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cd 210 (252)
T COG1124 162 LLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCD 210 (252)
T ss_pred EEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhh
Confidence 99999999999999999999999998665 7899999999999999885
No 22
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=3.7e-52 Score=369.88 Aligned_cols=196 Identities=27% Similarity=0.367 Sum_probs=177.6
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
++|+++||+++|+++.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.... ...+..++
T Consensus 40 ~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~--~~~~~~ig 117 (340)
T PRK13536 40 VAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA--RLARARIG 117 (340)
T ss_pred eeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch--HHHhccEE
Confidence 5799999999999999999999999999999999999999999999999999999999999999986432 23566899
Q ss_pred EeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEe
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLD 163 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlD 163 (229)
|++|++.+++.+|+.||+.++...++. .....++++.+++.+..++++.+|||||||||+||+||+.+|++||||
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLD 197 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILD 197 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 999999999999999999876544321 123456789999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 164 EPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 164 EPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|||+|||+.++..+++++++++++|+|||++||+++++++++|
T Consensus 198 EPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d 240 (340)
T PRK13536 198 EPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCD 240 (340)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCC
Confidence 9999999999999999999998789999999999999999875
No 23
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=3.2e-52 Score=348.27 Aligned_cols=195 Identities=32% Similarity=0.433 Sum_probs=170.8
Q ss_pred EEEEeEEEEeCC----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchh---hhh
Q 027067 11 LLLKNVSCMRNA----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF---HQY 83 (229)
Q Consensus 11 l~l~~l~~~~~~----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~---~~~ 83 (229)
|+++||+++|++ +++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...... ...
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 578999999986 7899999999999999999999999999999999999999999999999987643211 112
Q ss_pred hhcceEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCC
Q 027067 84 KLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRP 158 (229)
Q Consensus 84 ~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 158 (229)
+..++|++|++.+++.+|+.||+.+....... ...+.++++.+|+.+..++++.+|||||||||+|||||+.+|+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 160 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPK 160 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCC
Confidence 45799999999999999999999875433221 2345678999999988899999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067 159 IWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 159 illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~ 206 (229)
+|||||||++||+.+++.+.+++.++++ .|+|||++||++++++ .+|
T Consensus 161 lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d 208 (218)
T cd03255 161 IILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YAD 208 (218)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhc
Confidence 9999999999999999999999999876 5899999999999886 665
No 24
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-52 Score=347.97 Aligned_cols=194 Identities=31% Similarity=0.407 Sum_probs=172.0
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067 11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL 90 (229)
Q Consensus 11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~ 90 (229)
++++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... ..+..++|+
T Consensus 1 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~---~~~~~i~~v 77 (213)
T cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP---PERRNIGMV 77 (213)
T ss_pred CeeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc---hhhccEEEE
Confidence 57899999999889999999999999999999999999999999999999999999999999886432 124578999
Q ss_pred ecccccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCC
Q 027067 91 SLKDAVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEP 165 (229)
Q Consensus 91 ~~~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEP 165 (229)
+|++.+++.+|+.||+.+...... ....+.++++.+++.+..++++.+|||||||||+|||||+.+|++||||||
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEP 157 (213)
T cd03259 78 FQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEP 157 (213)
T ss_pred cCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999988888999999987543221 122456789999999889999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhcc
Q 027067 166 SVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 166 t~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~~ 207 (229)
|++||+.+++.+.+++.++++ .|.|||++||+++++.+++|.
T Consensus 158 t~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~ 200 (213)
T cd03259 158 LSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADR 200 (213)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCE
Confidence 999999999999999999866 489999999999999887763
No 25
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=3.5e-52 Score=345.90 Aligned_cols=193 Identities=25% Similarity=0.445 Sum_probs=173.6
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067 11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL 90 (229)
Q Consensus 11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~ 90 (229)
|+++|++++|+++++|+++||++++|++++|+||||||||||+++|+|+++|++|+|+++|+++... ...+..++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~---~~~~~~i~~~ 77 (208)
T cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN---IEALRRIGAL 77 (208)
T ss_pred CEEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch---HHHHhhEEEe
Confidence 5789999999888999999999999999999999999999999999999999999999999887542 2345679999
Q ss_pred ecccccCCCCCHHHhHHHHHHhcC-ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 027067 91 SLKDAVKEKFTVLDNVQWFEVLEG-KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVAL 169 (229)
Q Consensus 91 ~~~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~L 169 (229)
+|++.+++..|+.||+.++..... ...++.++++.+++.+..++++.+|||||||||+||||++.+|++|||||||++|
T Consensus 78 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 157 (208)
T cd03268 78 IEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGL 157 (208)
T ss_pred cCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccC
Confidence 999999989999999987643322 2335677899999998899999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 170 DYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 170 D~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|+.+++.+.+++.+++++|.|||++||+++++...+|
T Consensus 158 D~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d 194 (208)
T cd03268 158 DPDGIKELRELILSLRDQGITVLISSHLLSEIQKVAD 194 (208)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcC
Confidence 9999999999999987778999999999999988776
No 26
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-52 Score=370.72 Aligned_cols=196 Identities=27% Similarity=0.392 Sum_probs=177.0
Q ss_pred CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
.++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++..... .++.+
T Consensus 4 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~---~~r~i 80 (351)
T PRK11432 4 KNFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI---QQRDI 80 (351)
T ss_pred CcEEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH---HHCCE
Confidence 358999999999999999999999999999999999999999999999999999999999999999875432 34679
Q ss_pred eEeecccccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLL 162 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illl 162 (229)
+|++|++.+++++||+||+.|.....+ ...++.++++.+++.++.++++.+|||||||||+|||||+.+|++|||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLL 160 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLF 160 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999999999998754322 123566789999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 163 DEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 163 DEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
||||++||+..++.+.+.++++.++ |.|+|+||||++++..++|
T Consensus 161 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD 205 (351)
T PRK11432 161 DEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSD 205 (351)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCC
Confidence 9999999999999999999998654 8999999999999877654
No 27
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=4.7e-52 Score=351.16 Aligned_cols=197 Identities=29% Similarity=0.409 Sum_probs=173.5
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067 11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL 90 (229)
Q Consensus 11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~ 90 (229)
|+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.........+..++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 80 (236)
T cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRT 80 (236)
T ss_pred CeeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEE
Confidence 47899999999888999999999999999999999999999999999999999999999999886543222223568999
Q ss_pred ecccccCCCCCHHHhHHHHHHhcC---------------ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhc
Q 027067 91 SLKDAVKEKFTVLDNVQWFEVLEG---------------KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAI 155 (229)
Q Consensus 91 ~~~~~~~~~~tv~e~l~~~~~~~~---------------~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~ 155 (229)
+|++.+++.+|+.||+.+...... ....+.++++.+++.+..++++.+|||||||||+|||||+.
T Consensus 81 ~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~ 160 (236)
T cd03219 81 FQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALAT 160 (236)
T ss_pred ecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999999999987543211 11235678899999988899999999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067 156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~ 207 (229)
+|++|||||||++||+.+++.+.+++++++++|+|||++||+++++..++|.
T Consensus 161 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~ 212 (236)
T cd03219 161 DPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADR 212 (236)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCE
Confidence 9999999999999999999999999999877789999999999999887763
No 28
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-53 Score=344.04 Aligned_cols=196 Identities=23% Similarity=0.379 Sum_probs=182.0
Q ss_pred cEEEEeEEEEeCCee-eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 10 RLLLKNVSCMRNAQQ-ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~-iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
|+++.+++++|+..+ +++||||+++.||++||+|||||||||+||+|++++.|++|.|+++|.+....+ ..+++++|
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p--~~vrr~IG 78 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDP--SFVRRKIG 78 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccCh--HHHhhhcc
Confidence 689999999999876 999999999999999999999999999999999999999999999999987654 34678899
Q ss_pred EeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEe
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLD 163 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlD 163 (229)
.++.+..+|..+|++||+.|+..+++. +.+..++.+.++|.+.+++++.++|.||||||+|||||+++|++++||
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlD 158 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLD 158 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEc
Confidence 999888999999999999998876542 345667889999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067 164 EPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 164 EPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~ 207 (229)
|||||||..++..+.+++.+++++|++||++||++.+++..||.
T Consensus 159 EP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDr 202 (245)
T COG4555 159 EPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDR 202 (245)
T ss_pred CCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhhe
Confidence 99999999999999999999999999999999999999998873
No 29
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.9e-52 Score=347.04 Aligned_cols=195 Identities=24% Similarity=0.358 Sum_probs=173.6
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067 11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL 90 (229)
Q Consensus 11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~ 90 (229)
|+++|++++|+++++|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|+++|.++.... ...+..++|+
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~--~~~~~~i~~~ 78 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREP--REVRRRIGIV 78 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcCh--HHHhhcEEEe
Confidence 57999999999899999999999999999999999999999999999999999999999999875422 2345679999
Q ss_pred ecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCC
Q 027067 91 SLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEP 165 (229)
Q Consensus 91 ~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEP 165 (229)
+|++.+++.+|+.+|+.+....... ...+.++++.+++.+..++++.+|||||||||+||||++.+|++||||||
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEP 158 (220)
T cd03265 79 FQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEP 158 (220)
T ss_pred cCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999999999999999875433221 22456789999999889999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhcc
Q 027067 166 SVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 166 t~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~~ 207 (229)
|++||+.+++.+.+++.+++++ |+|||++||+++++...+|.
T Consensus 159 t~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~ 201 (220)
T cd03265 159 TIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDR 201 (220)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 9999999999999999998776 89999999999999988763
No 30
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=6.8e-52 Score=369.84 Aligned_cols=195 Identities=30% Similarity=0.383 Sum_probs=177.0
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
++|+++||+++|+++.+|+|+||++++||+++|+||||||||||||+|+|+.+|++|+|.++|+++..... .++.++
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~---~~r~ig 79 (353)
T TIGR03265 3 PYLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPP---QKRDYG 79 (353)
T ss_pred cEEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH---HHCCEE
Confidence 47999999999999999999999999999999999999999999999999999999999999999865432 356799
Q ss_pred EeecccccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEe
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLD 163 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlD 163 (229)
|++|++.+|+++||.||+.|+....+ ...++.++++.++|.++.++++.+|||||||||+|||||+.+|++||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLD 159 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLD 159 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999999999999998754322 1235678999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 164 EPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 164 EPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
|||++||+..++.+.+.++++.++ |.|+|+||||++++...+|
T Consensus 160 EP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d 203 (353)
T TIGR03265 160 EPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMAD 203 (353)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCC
Confidence 999999999999999999987654 8999999999999988765
No 31
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=6.4e-52 Score=346.45 Aligned_cols=195 Identities=27% Similarity=0.432 Sum_probs=174.5
Q ss_pred cEEEEeEEEEeCCe----eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhh
Q 027067 10 RLLLKNVSCMRNAQ----QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL 85 (229)
Q Consensus 10 ~l~l~~l~~~~~~~----~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 85 (229)
+++++||+++|+++ ++++++||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|+++.... ..++.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~--~~~~~ 78 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEP--AEARR 78 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCH--HHHHh
Confidence 48899999999876 8999999999999999999999999999999999999999999999999886421 23456
Q ss_pred cceEeecccccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeE
Q 027067 86 QLNWLSLKDAVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIW 160 (229)
Q Consensus 86 ~~~~~~~~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~il 160 (229)
.++|++|++.+++.+|+.||+.+...... ....+.++++.+++.+..++++.+||||||||++|||||+.+|++|
T Consensus 79 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~il 158 (218)
T cd03266 79 RLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVL 158 (218)
T ss_pred hEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 79999999999998999999987543322 1234567899999998999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 161 LLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 161 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
||||||++||+.+++.+.+++.+++++|.|||++||+++++..++|
T Consensus 159 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d 204 (218)
T cd03266 159 LLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCD 204 (218)
T ss_pred EEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcC
Confidence 9999999999999999999999987778999999999999988776
No 32
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=6e-52 Score=343.94 Aligned_cols=191 Identities=26% Similarity=0.359 Sum_probs=168.7
Q ss_pred EEEeEEEEeCC-eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067 12 LLKNVSCMRNA-QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL 90 (229)
Q Consensus 12 ~l~~l~~~~~~-~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~ 90 (229)
+++||+++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. ...+..++|+
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~----~~~~~~i~~~ 76 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA----KERRKSIGYV 76 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh----HHhhcceEEE
Confidence 47899999987 889999999999999999999999999999999999999999999999998753 2244579999
Q ss_pred ecccc-cCCCCCHHHhHHHHHHhcC-ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 027067 91 SLKDA-VKEKFTVLDNVQWFEVLEG-KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVA 168 (229)
Q Consensus 91 ~~~~~-~~~~~tv~e~l~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~ 168 (229)
+|++. .+...|+.||+.++..... ...++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~ 156 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSG 156 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCcc
Confidence 99864 2345799999987543322 123567889999999889999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 169 LDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 169 LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
||+.+++.+.+++++++++|.|||++||+++++.+.+|
T Consensus 157 LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d 194 (205)
T cd03226 157 LDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCD 194 (205)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence 99999999999999987778999999999999988776
No 33
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=1.2e-51 Score=370.57 Aligned_cols=197 Identities=27% Similarity=0.423 Sum_probs=177.1
Q ss_pred CCCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067 7 PLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ 86 (229)
Q Consensus 7 ~~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 86 (229)
..++|+++|++++|+++.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++..... .++.
T Consensus 11 ~~~~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~---~~r~ 87 (375)
T PRK09452 11 LSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPA---ENRH 87 (375)
T ss_pred CCceEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH---HHCC
Confidence 4467999999999999999999999999999999999999999999999999999999999999999865432 3467
Q ss_pred ceEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEE
Q 027067 87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWL 161 (229)
Q Consensus 87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ill 161 (229)
++|++|++.+++.+||.||+.|.....+. ..++.++++.+++.++.++++.+|||||||||+|||||+.+|++||
T Consensus 88 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llL 167 (375)
T PRK09452 88 VNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLL 167 (375)
T ss_pred EEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999999986543221 2345678999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 162 LDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 162 lDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
|||||++||...++.+.+.|+++.++ |.|+|+||||++++...+|
T Consensus 168 LDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laD 213 (375)
T PRK09452 168 LDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSD 213 (375)
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999999998664 8999999999999887664
No 34
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-52 Score=340.55 Aligned_cols=197 Identities=26% Similarity=0.367 Sum_probs=174.2
Q ss_pred CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCc-----cEEEEcCEeCCCCch-hh
Q 027067 8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSA-----GEILWNGHDITQSGI-FH 81 (229)
Q Consensus 8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~-----G~I~~~g~~~~~~~~-~~ 81 (229)
.+.++++||+++||++.+|++||++|++++++|++||||||||||||+++.+..... |+|.++|+++..... ..
T Consensus 5 ~~~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~ 84 (253)
T COG1117 5 IPAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVV 84 (253)
T ss_pred cceeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHH
Confidence 357999999999999999999999999999999999999999999999999987654 999999999876421 23
Q ss_pred hhhhcceEeecccccCCCCCHHHhHHHHHHhcCcc-----ccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHHHH
Q 027067 82 QYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQ-----GNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLARL 152 (229)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~-----~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lAra 152 (229)
..++++|+++|.++.|| +|++||+.++.+..+.. +.++..|+...|+ +.+++.+..||||||||+|||||
T Consensus 85 ~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARa 163 (253)
T COG1117 85 ELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARA 163 (253)
T ss_pred HHHHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHH
Confidence 56889999999999999 89999999987765432 2355677777775 34678899999999999999999
Q ss_pred HhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 153 LAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 153 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|+.+|+|||||||||+|||.+...+.+++.+++ +.-|||+|||++..+..+.|
T Consensus 164 lAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmqQAaRvSD 216 (253)
T COG1117 164 LAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQQAARVSD 216 (253)
T ss_pred HhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHHHHHHHhH
Confidence 999999999999999999999999999999997 46899999999999888765
No 35
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=1.4e-51 Score=361.19 Aligned_cols=196 Identities=27% Similarity=0.374 Sum_probs=175.3
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
.+++++||+++|+++.+|+++||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.... ...+..++
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~~i~ 80 (303)
T TIGR01288 3 VAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRA--RLARVAIG 80 (303)
T ss_pred cEEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccH--HHHhhcEE
Confidence 4799999999999999999999999999999999999999999999999999999999999999875432 23456799
Q ss_pred EeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEe
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLD 163 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlD 163 (229)
|++|++.+++.+|+.||+.++...... ...+.++++.+++.+..++++.+|||||||||+|||||+.+|++||||
T Consensus 81 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD 160 (303)
T TIGR01288 81 VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILD 160 (303)
T ss_pred EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999999999999999865433221 123456789999998899999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 164 EPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 164 EPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|||+|||+.+++.+.+++.+++++|.|||++||+++++++++|
T Consensus 161 EPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d 203 (303)
T TIGR01288 161 EPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCD 203 (303)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCC
Confidence 9999999999999999999998789999999999999998775
No 36
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=1.5e-51 Score=347.32 Aligned_cols=196 Identities=30% Similarity=0.431 Sum_probs=173.0
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067 11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL 90 (229)
Q Consensus 11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~ 90 (229)
++++||+++|+++.+|+++||++++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.........+..++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYL 80 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEe
Confidence 57899999999889999999999999999999999999999999999999999999999999876433222223468999
Q ss_pred ecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCC
Q 027067 91 SLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEP 165 (229)
Q Consensus 91 ~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEP 165 (229)
+|++.+++.+|+.||+.+....... ...+.++++.+++.+..++.+.+|||||||||+|||||+.+|++||||||
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 160 (232)
T cd03218 81 PQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEP 160 (232)
T ss_pred cCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 9999999999999999875432211 12345788999999889999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 166 SVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 166 t~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|++||+.+++.+.++++++++++.|||++||+++++.+.+|
T Consensus 161 t~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d 201 (232)
T cd03218 161 FAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITD 201 (232)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999987778999999999999988876
No 37
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=2.3e-51 Score=341.95 Aligned_cols=196 Identities=27% Similarity=0.345 Sum_probs=172.5
Q ss_pred EEEEeEEEEeCC-eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchh--hhhhhcc
Q 027067 11 LLLKNVSCMRNA-QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF--HQYKLQL 87 (229)
Q Consensus 11 l~l~~l~~~~~~-~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~--~~~~~~~ 87 (229)
++++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++...... ..++..+
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 478999999964 6899999999999999999999999999999999999999999999999988653221 2245679
Q ss_pred eEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLL 162 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illl 162 (229)
+|++|++.+++.+|+.||+.+....... ..++.++++.+++.+..++++.+||||||||++|||||+.+|+++||
T Consensus 81 ~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 160 (214)
T cd03292 81 GVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIA 160 (214)
T ss_pred EEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999999999999999876432211 12456788999998888999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 163 DEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 163 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
||||++||+.+++.+.+++++++++|+|||++||+++++.+.+|
T Consensus 161 DEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d 204 (214)
T cd03292 161 DEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRH 204 (214)
T ss_pred eCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999999987778999999999999988766
No 38
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-51 Score=348.17 Aligned_cols=194 Identities=30% Similarity=0.404 Sum_probs=172.0
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW 89 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 89 (229)
+++++||+++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++..... .+..++|
T Consensus 2 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~---~~~~i~~ 78 (239)
T cd03296 2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV---QERNVGF 78 (239)
T ss_pred EEEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc---cccceEE
Confidence 5899999999998899999999999999999999999999999999999999999999999998764321 2357899
Q ss_pred eecccccCCCCCHHHhHHHHHHhcC-----c----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeE
Q 027067 90 LSLKDAVKEKFTVLDNVQWFEVLEG-----K----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIW 160 (229)
Q Consensus 90 ~~~~~~~~~~~tv~e~l~~~~~~~~-----~----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~il 160 (229)
++|++.+++..|+.||+.+...... . ...+.++++.+++.+..++++.+|||||||||+|||||+.+|++|
T Consensus 79 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll 158 (239)
T cd03296 79 VFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVL 158 (239)
T ss_pred EecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999888999999987543211 1 123457789999998899999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 161 LLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 161 llDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
||||||++||+.+++.+.+++.+++++ |+|||++||+++++...+|
T Consensus 159 llDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d 205 (239)
T cd03296 159 LLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVAD 205 (239)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence 999999999999999999999998765 8999999999999888765
No 39
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.7e-51 Score=344.57 Aligned_cols=197 Identities=25% Similarity=0.330 Sum_probs=172.2
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067 11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL 90 (229)
Q Consensus 11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~ 90 (229)
|+++||+++|+++++++++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.........+..++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (222)
T cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYV 80 (222)
T ss_pred CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEe
Confidence 57899999999889999999999999999999999999999999999999999999999999886543322234569999
Q ss_pred ecccccCCCCCHHHhHHHHHHhcC---ccccHHHHHHHh-CCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCC
Q 027067 91 SLKDAVKEKFTVLDNVQWFEVLEG---KQGNSLPALELM-GLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPS 166 (229)
Q Consensus 91 ~~~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~l~~~-~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt 166 (229)
+|++.+++.+|+.||+.+...... ......++++.+ ++.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 81 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 160 (222)
T cd03224 81 PEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPS 160 (222)
T ss_pred ccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 999999999999999987543321 112345677777 5777889999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067 167 VALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 167 ~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~ 207 (229)
++||+.+++.+.+++.+++++|.|||++||+++++..++|.
T Consensus 161 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~ 201 (222)
T cd03224 161 EGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADR 201 (222)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccE
Confidence 99999999999999999877789999999999999888763
No 40
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-51 Score=344.02 Aligned_cols=191 Identities=33% Similarity=0.443 Sum_probs=170.3
Q ss_pred EEEEeEEEEeCC----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067 11 LLLKNVSCMRNA----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ 86 (229)
Q Consensus 11 l~l~~l~~~~~~----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 86 (229)
|+++|++++|++ +++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.. .+..
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~------~~~~ 74 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG------PGPD 74 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc------ccCc
Confidence 578999999987 789999999999999999999999999999999999999999999999998753 2356
Q ss_pred ceEeecccccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEE
Q 027067 87 LNWLSLKDAVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWL 161 (229)
Q Consensus 87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ill 161 (229)
++|++|++.+++.+|+.||+.+...... ....+.++++.+++.+..++++.+||||||||++|||||+.+|++||
T Consensus 75 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lll 154 (220)
T cd03293 75 RGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLL 154 (220)
T ss_pred EEEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 8999999988888999999987543221 12345678999999988899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhcc
Q 027067 162 LDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 162 lDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~~ 207 (229)
|||||++||+.+++.+.+++.++.+ .|.|||++||+++++..++|.
T Consensus 155 LDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~ 201 (220)
T cd03293 155 LDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADR 201 (220)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCE
Confidence 9999999999999999999999854 489999999999999887763
No 41
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=2.3e-51 Score=341.80 Aligned_cols=197 Identities=26% Similarity=0.415 Sum_probs=173.2
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCc-hhhhhhhcceE
Q 027067 11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG-IFHQYKLQLNW 89 (229)
Q Consensus 11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~-~~~~~~~~~~~ 89 (229)
++++||+++|+++++|+++||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... ....++..++|
T Consensus 1 l~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (213)
T cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGM 80 (213)
T ss_pred CEEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceE
Confidence 47899999999889999999999999999999999999999999999999999999999999875311 11234568999
Q ss_pred eecccccCCCCCHHHhHHHHHH-hcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEe
Q 027067 90 LSLKDAVKEKFTVLDNVQWFEV-LEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLD 163 (229)
Q Consensus 90 ~~~~~~~~~~~tv~e~l~~~~~-~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlD 163 (229)
++|++.+++.+|+.||+.+... ... ....+.++++.+++.+..++++.+|||||+||++||||++.+|++||||
T Consensus 81 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 160 (213)
T cd03262 81 VFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFD 160 (213)
T ss_pred EecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999999988999999987532 111 1123567889999988899999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067 164 EPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 164 EPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~ 207 (229)
|||+|||+.+++.+.+++.+++++|.|||++||+++++.+++|.
T Consensus 161 EP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~ 204 (213)
T cd03262 161 EPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADR 204 (213)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCE
Confidence 99999999999999999999877789999999999999887763
No 42
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.2e-51 Score=341.64 Aligned_cols=194 Identities=31% Similarity=0.440 Sum_probs=169.6
Q ss_pred EEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067 12 LLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW 89 (229)
Q Consensus 12 ~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 89 (229)
+++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..... ..++..++|
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~-~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSL-KELRRKVGL 79 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCH-HHHHhhceE
Confidence 47899999987 889999999999999999999999999999999999999999999999998864322 234567999
Q ss_pred eecccc-cCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEe
Q 027067 90 LSLKDA-VKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLD 163 (229)
Q Consensus 90 ~~~~~~-~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlD 163 (229)
++|++. .++..|+.||+.+...... ....+.++++.+++.+..++++.+|||||||||+|||||+.+|++||||
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD 159 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLD 159 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 999875 3567899999977543221 1223567889999988889999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 164 EPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 164 EPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|||++||+.+++.+.+++.+++++|.|||++||+++++...+|
T Consensus 160 EPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d 202 (211)
T cd03225 160 EPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELAD 202 (211)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence 9999999999999999999987778999999999999988776
No 43
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=4.6e-51 Score=342.47 Aligned_cols=197 Identities=29% Similarity=0.363 Sum_probs=173.5
Q ss_pred cEEEEeEEEEe-CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchh--hhhhhc
Q 027067 10 RLLLKNVSCMR-NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF--HQYKLQ 86 (229)
Q Consensus 10 ~l~l~~l~~~~-~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~--~~~~~~ 86 (229)
||+++|++++| +++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...... ..++..
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred CEEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 48999999999 678899999999999999999999999999999999999999999999999988643211 124567
Q ss_pred ceEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEE
Q 027067 87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWL 161 (229)
Q Consensus 87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ill 161 (229)
++|++|++.+++..|+.||+.+....... ...+.++++.+++.+..++++.+|||||||||+|||||+.+|++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 160 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLL 160 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999888889999999875432211 1234578899999888899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 162 LDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 162 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|||||++||+.+++.+.+++.++++++.|+|++||+++++..++|
T Consensus 161 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d 205 (222)
T PRK10908 161 ADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSY 205 (222)
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence 999999999999999999999987778999999999999988776
No 44
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-51 Score=344.89 Aligned_cols=196 Identities=26% Similarity=0.413 Sum_probs=171.6
Q ss_pred CcEEEEeEEEEeCC----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhh--h
Q 027067 9 PRLLLKNVSCMRNA----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFH--Q 82 (229)
Q Consensus 9 ~~l~l~~l~~~~~~----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~--~ 82 (229)
++++++||+++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++....... .
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHH
Confidence 57999999999964 57999999999999999999999999999999999999999999999999986543211 1
Q ss_pred h-hhcceEeecccccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcC
Q 027067 83 Y-KLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAID 156 (229)
Q Consensus 83 ~-~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 156 (229)
. +..++|++|++.+++.+|+.||+.+...... ...++.++++.+|+.+..++++.+||||||||++||||++.+
T Consensus 84 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~ 163 (233)
T PRK11629 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNN 163 (233)
T ss_pred HHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 2 2569999999999998999999987533211 123456789999999888999999999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhh
Q 027067 157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDA 204 (229)
Q Consensus 157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~ 204 (229)
|++|||||||++||+.+++.+.++++++++ +|.|||++||+++++..+
T Consensus 164 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~ 212 (233)
T PRK11629 164 PRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM 212 (233)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh
Confidence 999999999999999999999999999865 589999999999998775
No 45
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-51 Score=341.34 Aligned_cols=192 Identities=28% Similarity=0.436 Sum_probs=171.9
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067 11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL 90 (229)
Q Consensus 11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~ 90 (229)
++++|++++|+++.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. ..+..++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-----~~~~~i~~~ 75 (210)
T cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI-----AARNRIGYL 75 (210)
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH-----HHHccEEEe
Confidence 578999999998899999999999999999999999999999999999999999999999987642 234578999
Q ss_pred ecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCC
Q 027067 91 SLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEP 165 (229)
Q Consensus 91 ~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEP 165 (229)
+|++.+++.+|+.||+.+....... ...+.++++.+++.+..++++.+|||||||||+|||||+.+|+++|||||
T Consensus 76 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP 155 (210)
T cd03269 76 PEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEP 155 (210)
T ss_pred ccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 9999999999999999875433221 23456789999999888999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067 166 SVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 166 t~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~ 207 (229)
|++||+.+++.+.++++++++++.|||++||+++++.+++|.
T Consensus 156 ~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~ 197 (210)
T cd03269 156 FSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDR 197 (210)
T ss_pred CcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhE
Confidence 999999999999999999877789999999999999887763
No 46
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=4.6e-51 Score=352.26 Aligned_cols=201 Identities=25% Similarity=0.358 Sum_probs=175.0
Q ss_pred CCCCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchh--hhh
Q 027067 6 PPLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF--HQY 83 (229)
Q Consensus 6 ~~~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~--~~~ 83 (229)
++.++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...... ...
T Consensus 3 ~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (269)
T PRK11831 3 SVANLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTV 82 (269)
T ss_pred CccceEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHH
Confidence 345689999999999989999999999999999999999999999999999999999999999999987643211 123
Q ss_pred hhcceEeecccccCCCCCHHHhHHHHHHhc-C-c----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCC
Q 027067 84 KLQLNWLSLKDAVKEKFTVLDNVQWFEVLE-G-K----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDR 157 (229)
Q Consensus 84 ~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~-~-~----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 157 (229)
+..++|++|++.+++.+|+.||+.+..... . . ...+.++++.+++.+..++++.+|||||||||+|||||+.+|
T Consensus 83 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p 162 (269)
T PRK11831 83 RKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEP 162 (269)
T ss_pred hhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 457899999999999899999998643221 1 1 123456789999998899999999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 158 PIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
++|||||||++||+.+++.+.+++.+++++ |.|||++|||++++.+++|
T Consensus 163 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d 212 (269)
T PRK11831 163 DLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIAD 212 (269)
T ss_pred CEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhC
Confidence 999999999999999999999999998665 8999999999999988765
No 47
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=3.1e-51 Score=366.46 Aligned_cols=194 Identities=29% Similarity=0.359 Sum_probs=175.5
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCc--cEEEEcCEeCCCCchhhhhhhcc
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSA--GEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~--G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
.|+++||+++|+++.+|+|+||+|++||+++|+||||||||||||+|+|+++|++ |+|+++|+++..... .++.+
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~---~~r~i 81 (362)
T TIGR03258 5 GIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP---HKRGL 81 (362)
T ss_pred EEEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH---HHCCE
Confidence 5899999999999899999999999999999999999999999999999999999 999999999865332 34679
Q ss_pred eEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLL 162 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illl 162 (229)
+|++|++.+++.+||+||+.|+....+. ..++.++++.++|.++.++++.+|||||||||+|||||+.+|++|||
T Consensus 82 g~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLL 161 (362)
T TIGR03258 82 ALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLL 161 (362)
T ss_pred EEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999999999987543221 23466789999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC--CcEEEEEeCChhhHHhhhc
Q 027067 163 DEPSVALDYDGVRLLEYIIAEHRKK--GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 163 DEPt~~LD~~~~~~l~~~l~~~~~~--g~tii~vtH~~~~~~~~~~ 206 (229)
||||++||+..++.+.+.++++.++ |.|+|+||||++++...+|
T Consensus 162 DEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~d 207 (362)
T TIGR03258 162 DEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLAD 207 (362)
T ss_pred cCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCC
Confidence 9999999999999999999998766 7899999999999887653
No 48
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=3.3e-51 Score=341.00 Aligned_cols=193 Identities=28% Similarity=0.391 Sum_probs=171.2
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067 11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL 90 (229)
Q Consensus 11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~ 90 (229)
++++|++++|+++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..... .+..++|+
T Consensus 1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~---~~~~i~~~ 77 (213)
T cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPP---KDRDIAMV 77 (213)
T ss_pred CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc---ccceEEEE
Confidence 478999999998899999999999999999999999999999999999999999999999998864322 23579999
Q ss_pred ecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCC
Q 027067 91 SLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEP 165 (229)
Q Consensus 91 ~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEP 165 (229)
+|++.+++..|+.||+.+....... ..++.++++.+++.+..++++.+||||||||++|||||+.+|+++|||||
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP 157 (213)
T cd03301 78 FQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEP 157 (213)
T ss_pred ecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999888889999999875432211 12345778999999889999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 166 SVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 166 t~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
|+|||+.+++.+.+++++++++ |.|||++||+++++...+|
T Consensus 158 t~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d 199 (213)
T cd03301 158 LSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMAD 199 (213)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcC
Confidence 9999999999999999998764 8999999999999888776
No 49
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4e-51 Score=339.04 Aligned_cols=192 Identities=34% Similarity=0.694 Sum_probs=172.3
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW 89 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 89 (229)
+++++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ..++.+++|
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~--~~~~~~~~~ 78 (204)
T PRK13538 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR--DEYHQDLLY 78 (204)
T ss_pred CeEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch--HHhhhheEE
Confidence 589999999999999999999999999999999999999999999999999999999999999876432 234567899
Q ss_pred eecccccCCCCCHHHhHHHHHHhcC--ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCC
Q 027067 90 LSLKDAVKEKFTVLDNVQWFEVLEG--KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSV 167 (229)
Q Consensus 90 ~~~~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~ 167 (229)
+++++.+++.+|+.||+.+...... ....+.++++.+|+.+..++++.+||||||||++||||++.+|+++||||||+
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 158 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFT 158 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 9999888888999999987654322 22346678999999888899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067 168 ALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 168 ~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~ 203 (229)
+||+.+++.+.+++.++++++.|||++||+++++..
T Consensus 159 ~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~ 194 (204)
T PRK13538 159 AIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVAS 194 (204)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhcc
Confidence 999999999999999987778999999999988866
No 50
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-51 Score=347.52 Aligned_cols=197 Identities=30% Similarity=0.413 Sum_probs=171.6
Q ss_pred EEEEeEEEEeCC-eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCch--hhhhhhcc
Q 027067 11 LLLKNVSCMRNA-QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI--FHQYKLQL 87 (229)
Q Consensus 11 l~l~~l~~~~~~-~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~--~~~~~~~~ 87 (229)
++++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..... ....+..+
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 478999999987 889999999999999999999999999999999999999999999999998865431 12345679
Q ss_pred eEeecccccCCCCCHHHhHHHHHHh--------cC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHh
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFEVL--------EG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLA 154 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~~~--------~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~ 154 (229)
+|++|++.+++.+|+.||+.+.... .. ....+.++++.+++.+..++++.+|||||||||+|||||+
T Consensus 81 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 160 (241)
T cd03256 81 GMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALM 160 (241)
T ss_pred EEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHh
Confidence 9999999999889999999763210 00 1123557789999988889999999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhcc
Q 027067 155 IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 155 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~~ 207 (229)
.+|++|||||||++||+.+++.+.+++.++++ .|+|||++||+++++..++|.
T Consensus 161 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~ 214 (241)
T cd03256 161 QQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADR 214 (241)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 99999999999999999999999999999865 489999999999999987763
No 51
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.8e-51 Score=345.18 Aligned_cols=199 Identities=27% Similarity=0.374 Sum_probs=174.7
Q ss_pred cEEEEeEEEEeCCe----eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchh--hhh
Q 027067 10 RLLLKNVSCMRNAQ----QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF--HQY 83 (229)
Q Consensus 10 ~l~l~~l~~~~~~~----~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~--~~~ 83 (229)
+|+++|++++|+++ ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...... ...
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence 58999999999876 899999999999999999999999999999999999999999999999988653221 123
Q ss_pred hhcceEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCC
Q 027067 84 KLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRP 158 (229)
Q Consensus 84 ~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 158 (229)
+..++|++|++.+++.+|+.||+.+....... ...+.++++.+++.+..++++.+|||||||||+|||||+.+|+
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 160 (233)
T cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPK 160 (233)
T ss_pred HhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 56799999999999889999999875432211 2245678999999988999999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhccC
Q 027067 159 IWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMNLR 208 (229)
Q Consensus 159 illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~~~ 208 (229)
++||||||++||+.+++.+.+++.+++++ |+|||++||+++++..++|.-
T Consensus 161 lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i 211 (233)
T cd03258 161 VLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRV 211 (233)
T ss_pred EEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE
Confidence 99999999999999999999999998765 899999999999998877643
No 52
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-51 Score=362.97 Aligned_cols=197 Identities=27% Similarity=0.373 Sum_probs=174.4
Q ss_pred cEEEEeEEEEeC----CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchh--hhh
Q 027067 10 RLLLKNVSCMRN----AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF--HQY 83 (229)
Q Consensus 10 ~l~l~~l~~~~~----~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~--~~~ 83 (229)
||+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+.. ...
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 589999999997 46899999999999999999999999999999999999999999999999998754321 123
Q ss_pred hhcceEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCC
Q 027067 84 KLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRP 158 (229)
Q Consensus 84 ~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 158 (229)
+..++|++|++.+++.+|+.||+.+.....+. ..++.++++.+|+.+..++++.+|||||||||+|||||+.+|+
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ 160 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPK 160 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 56799999999999999999999876443221 1245678999999989999999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 159 IWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 159 illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
+|||||||++||+.+++.+.+++++++++ |.|||++||+++++.+++|
T Consensus 161 iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d 209 (343)
T PRK11153 161 VLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICD 209 (343)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999999999998654 8999999999999988764
No 53
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=3.6e-51 Score=365.23 Aligned_cols=194 Identities=27% Similarity=0.391 Sum_probs=175.1
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW 89 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 89 (229)
+|+++||+++|+++.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... ..++.++|
T Consensus 2 ~L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~---~~~r~i~~ 78 (353)
T PRK10851 2 SIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLH---ARDRKVGF 78 (353)
T ss_pred EEEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC---HHHCCEEE
Confidence 589999999999999999999999999999999999999999999999999999999999999986532 23457999
Q ss_pred eecccccCCCCCHHHhHHHHHHhc----C-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeE
Q 027067 90 LSLKDAVKEKFTVLDNVQWFEVLE----G-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIW 160 (229)
Q Consensus 90 ~~~~~~~~~~~tv~e~l~~~~~~~----~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~il 160 (229)
++|++.+++.+||.||+.+..... . ...++.++++.+++.++.++++.+|||||||||+|||||+.+|++|
T Consensus 79 v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~ll 158 (353)
T PRK10851 79 VFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQIL 158 (353)
T ss_pred EecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999998864321 1 1234567899999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 161 LLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 161 llDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
||||||++||+..++.+.+.+.+++++ |.|+|+||||++++..++|
T Consensus 159 LLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~D 205 (353)
T PRK10851 159 LLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVAD 205 (353)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 999999999999999999999998765 8999999999999988775
No 54
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-51 Score=366.79 Aligned_cols=194 Identities=26% Similarity=0.396 Sum_probs=174.6
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW 89 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 89 (229)
+|+++|++++|+++.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++..... .++.++|
T Consensus 3 ~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~---~~~~i~~ 79 (369)
T PRK11000 3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP---AERGVGM 79 (369)
T ss_pred EEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH---hHCCEEE
Confidence 5999999999999899999999999999999999999999999999999999999999999999865332 2457999
Q ss_pred eecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeC
Q 027067 90 LSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDE 164 (229)
Q Consensus 90 ~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDE 164 (229)
++|++.+++.+||.||+.+.....+. ..++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||
T Consensus 80 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDE 159 (369)
T PRK11000 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDE 159 (369)
T ss_pred EeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99999999999999999886543221 2346678999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 165 PSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 165 Pt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
||++||+.+++.+.+.++++.++ |.|+|+||||++++...+|
T Consensus 160 Pts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d 202 (369)
T PRK11000 160 PLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLAD 202 (369)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999998664 8999999999999888764
No 55
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-51 Score=347.33 Aligned_cols=201 Identities=30% Similarity=0.403 Sum_probs=176.3
Q ss_pred CcEEEEeEEEEeCCe-eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 9 PRLLLKNVSCMRNAQ-QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~-~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
++++++|++++|++. .+|+++||+|++||+++|+|+||||||||+++++|+++|++|+|.++|.++.........++++
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 479999999999765 9999999999999999999999999999999999999999999999999876311224567789
Q ss_pred eEeecccc-cCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEE
Q 027067 88 NWLSLKDA-VKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWL 161 (229)
Q Consensus 88 ~~~~~~~~-~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ill 161 (229)
||++|++. .+..-||.+.++|+....+ ...++.++++.+|+.++++++|++|||||||||+||.+|+++|++||
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~ili 161 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILL 161 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEE
Confidence 99999872 2334599999998765432 22456789999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhccCC
Q 027067 162 LDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMNLRL 209 (229)
Q Consensus 162 lDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~~~~ 209 (229)
||||||+||+.+++.+.+++.+++++ |+|+|++|||++.+...+|.-+
T Consensus 162 LDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~ 210 (235)
T COG1122 162 LDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVV 210 (235)
T ss_pred EcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEE
Confidence 99999999999999999999999877 6899999999999999775433
No 56
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=3.9e-51 Score=369.71 Aligned_cols=197 Identities=25% Similarity=0.362 Sum_probs=177.2
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
++|+++||+++|+++++|+++||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++..... ...+++++
T Consensus 2 ~~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~-~~~~~~ig 80 (402)
T PRK09536 2 PMIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSA-RAASRRVA 80 (402)
T ss_pred ceEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCH-HHHhcceE
Confidence 47999999999999999999999999999999999999999999999999999999999999999876443 34566799
Q ss_pred EeecccccCCCCCHHHhHHHHHHh-----c--C--ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCe
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEVL-----E--G--KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPI 159 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~~-----~--~--~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~i 159 (229)
|++|++.+++.+|+.||+.+.... . . ....+.++++.+++.++.++++.+|||||||||+|||||+++|++
T Consensus 81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~i 160 (402)
T PRK09536 81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPV 160 (402)
T ss_pred EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 999999998999999999864311 1 1 123456789999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 160 WLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 160 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|||||||++||+.++..+.+++++++++|.|||++|||++++...+|
T Consensus 161 LLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~ad 207 (402)
T PRK09536 161 LLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCD 207 (402)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCC
Confidence 99999999999999999999999998778999999999999988775
No 57
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=2.7e-51 Score=347.96 Aligned_cols=197 Identities=30% Similarity=0.410 Sum_probs=171.5
Q ss_pred cEEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCch--hhhhhhc
Q 027067 10 RLLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI--FHQYKLQ 86 (229)
Q Consensus 10 ~l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~--~~~~~~~ 86 (229)
+++++||+++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..... ....+..
T Consensus 1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred CeEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 588999999998 7889999999999999999999999999999999999999999999999998764321 1224567
Q ss_pred ceEeecccccCCCCCHHHhHHHHHHh---------c--C--ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHH
Q 027067 87 LNWLSLKDAVKEKFTVLDNVQWFEVL---------E--G--KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLL 153 (229)
Q Consensus 87 ~~~~~~~~~~~~~~tv~e~l~~~~~~---------~--~--~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral 153 (229)
++|++|++.+++.+|+.||+.+.... . . ...++.++++.+++.+..++++.+|||||||||+|||||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al 160 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARAL 160 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence 99999999999889999999753210 0 0 112456788999998888999999999999999999999
Q ss_pred hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
+.+|++|||||||++||+.+++.+.+++.+++++ |+|||++||+++++.+.+|
T Consensus 161 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d 214 (243)
T TIGR02315 161 AQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYAD 214 (243)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcC
Confidence 9999999999999999999999999999998654 8999999999999988765
No 58
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=1.6e-51 Score=343.12 Aligned_cols=190 Identities=26% Similarity=0.378 Sum_probs=166.6
Q ss_pred EEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEee
Q 027067 12 LLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLS 91 (229)
Q Consensus 12 ~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~ 91 (229)
+++||+++|+++++++++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++. ..+..++|++
T Consensus 1 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~------~~~~~i~~v~ 74 (213)
T cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE------KERKRIGYVP 74 (213)
T ss_pred CcccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH------HHHhheEEec
Confidence 4789999999888999999999999999999999999999999999999999999999998763 2345799999
Q ss_pred cccccC--CCCCHHHhHHHHHHhc-------C--ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeE
Q 027067 92 LKDAVK--EKFTVLDNVQWFEVLE-------G--KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIW 160 (229)
Q Consensus 92 ~~~~~~--~~~tv~e~l~~~~~~~-------~--~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~il 160 (229)
|++.+. ...|+.||+.+..... . ...++.++++.+++.+..++++.+|||||||||+|||||+.+|++|
T Consensus 75 q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll 154 (213)
T cd03235 75 QRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLL 154 (213)
T ss_pred cccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 987763 3379999998643211 0 1124567889999988899999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067 161 LLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 161 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~ 207 (229)
||||||++||+.+++.+.+++.+++++|.|||++||+++++.+++|.
T Consensus 155 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~ 201 (213)
T cd03235 155 LLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDR 201 (213)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCE
Confidence 99999999999999999999999877789999999999999887763
No 59
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.1e-50 Score=339.74 Aligned_cols=196 Identities=26% Similarity=0.426 Sum_probs=169.4
Q ss_pred cEEEEeEEEEeCC----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhh--hh
Q 027067 10 RLLLKNVSCMRNA----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFH--QY 83 (229)
Q Consensus 10 ~l~l~~l~~~~~~----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~--~~ 83 (229)
+|+++||+++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++....... .+
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL 80 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHH
Confidence 4789999999964 57999999999999999999999999999999999999999999999999886543211 12
Q ss_pred h-hcceEeecccccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCC
Q 027067 84 K-LQLNWLSLKDAVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDR 157 (229)
Q Consensus 84 ~-~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 157 (229)
+ ..++|++|++.+++..|+.||+.+...... ....+.++++.+++.+..++++.+|||||||||+|||||+.+|
T Consensus 81 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 160 (221)
T TIGR02211 81 RNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQP 160 (221)
T ss_pred HHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCC
Confidence 2 569999999988888999999987432211 1223567899999998899999999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067 158 PIWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~ 206 (229)
++|||||||++||+.+++.+.+++.++++ .+.|||++||++++++. +|
T Consensus 161 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d 209 (221)
T TIGR02211 161 SLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LD 209 (221)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cC
Confidence 99999999999999999999999999865 48999999999998865 35
No 60
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=8.6e-51 Score=344.82 Aligned_cols=197 Identities=24% Similarity=0.358 Sum_probs=173.3
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
++|+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.........+..++
T Consensus 1 ~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (242)
T TIGR03411 1 PILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG 80 (242)
T ss_pred CeEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence 47899999999998899999999999999999999999999999999999999999999999998765432222345699
Q ss_pred EeecccccCCCCCHHHhHHHHHHhcC-------------ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhc
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEVLEG-------------KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAI 155 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~~~~-------------~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~ 155 (229)
|++|++.+++.+|+.||+.+...... ....+.++++.+++.+..++++.+|||||+|||+||||++.
T Consensus 81 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~ 160 (242)
T TIGR03411 81 RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQ 160 (242)
T ss_pred EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999999999999987532110 12245678899999988899999999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
+|++|||||||++||+.+++.+.++++++++ ++|||++||+++++.+.+|
T Consensus 161 ~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d 210 (242)
T TIGR03411 161 DPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDMEFVRSIAD 210 (242)
T ss_pred CCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCC
Confidence 9999999999999999999999999999865 6899999999999988775
No 61
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.2e-51 Score=347.42 Aligned_cols=198 Identities=25% Similarity=0.342 Sum_probs=173.4
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
++++++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.........+..++
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (255)
T PRK11300 4 PLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVV 83 (255)
T ss_pred ceEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeE
Confidence 48999999999998999999999999999999999999999999999999999999999999998865432222334588
Q ss_pred EeecccccCCCCCHHHhHHHHHHh----------c------Cc----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHH
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEVL----------E------GK----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQ 148 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~~----------~------~~----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~ 148 (229)
|++|++.+++.+|+.||+.+.... . .. ...+.++++.+|+.+..++++.+|||||||||+
T Consensus 84 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~ 163 (255)
T PRK11300 84 RTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLE 163 (255)
T ss_pred EeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHH
Confidence 999999999999999999864210 0 00 123456788999988899999999999999999
Q ss_pred HHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 149 LARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 149 lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
|||||+.+|++|||||||++||+.+++.+.++|.+++++ |.|||++||+++++.+++|
T Consensus 164 la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d 222 (255)
T PRK11300 164 IARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISD 222 (255)
T ss_pred HHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCC
Confidence 999999999999999999999999999999999998765 8999999999999988775
No 62
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=8.5e-51 Score=355.94 Aligned_cols=194 Identities=24% Similarity=0.411 Sum_probs=175.5
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW 89 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 89 (229)
.++++|++++|+++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++.... ...+..++|
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~--~~~~~~ig~ 79 (301)
T TIGR03522 2 SIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNP--KEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCh--HHHHhceEE
Confidence 489999999999999999999999999999999999999999999999999999999999999886532 234567999
Q ss_pred eecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeC
Q 027067 90 LSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDE 164 (229)
Q Consensus 90 ~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDE 164 (229)
++|++.+++.+|+.||+.+.....+. ..++.++++.+|+.+..++++.+|||||||||+|||||+.+|++|||||
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDE 159 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDE 159 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99999999999999999876654321 2346678999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 165 PSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 165 Pt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
||+|||+.+++.++++++++++ ++|||++||+++++++.+|
T Consensus 160 Pt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~~~~~~~d 200 (301)
T TIGR03522 160 PTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQEVEAICD 200 (301)
T ss_pred CcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHHhCC
Confidence 9999999999999999999865 7999999999999999775
No 63
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1e-50 Score=335.61 Aligned_cols=194 Identities=29% Similarity=0.487 Sum_probs=171.7
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW 89 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 89 (229)
||+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ...++.+++|
T Consensus 1 ml~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~--~~~~~~~i~~ 78 (200)
T PRK13540 1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKD--LCTYQKQLCF 78 (200)
T ss_pred CEEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccC--HHHHHhheEE
Confidence 58999999999988999999999999999999999999999999999999999999999999987542 1235568999
Q ss_pred eecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 027067 90 LSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVAL 169 (229)
Q Consensus 90 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~L 169 (229)
++|+..+++..|+.||+.+..........+.++++.+++.+..++++.+||+||+||++||||++.+|++|||||||++|
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~L 158 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVAL 158 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccc
Confidence 99998888889999999875322222234677899999988889999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 170 DYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 170 D~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|+.+++.+.+++.+++++|.|||++||+...+.. +|
T Consensus 159 D~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~-~d 194 (200)
T PRK13540 159 DELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNK-AD 194 (200)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccc-cc
Confidence 9999999999999987778999999999888755 44
No 64
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.8e-51 Score=344.72 Aligned_cols=197 Identities=24% Similarity=0.367 Sum_probs=174.7
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW 89 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 89 (229)
+++++||+++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.........+..++|
T Consensus 3 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 82 (241)
T PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGY 82 (241)
T ss_pred eEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEE
Confidence 79999999999988999999999999999999999999999999999999999999999999988654322223467999
Q ss_pred eecccccCCCCCHHHhHHHHHHhcC------ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEe
Q 027067 90 LSLKDAVKEKFTVLDNVQWFEVLEG------KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLD 163 (229)
Q Consensus 90 ~~~~~~~~~~~tv~e~l~~~~~~~~------~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlD 163 (229)
++|++.+++.+|+.||+.+...... ....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++||||
T Consensus 83 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 162 (241)
T PRK10895 83 LPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLD 162 (241)
T ss_pred eccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 9999999988999999986532211 1123567889999988889999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 164 EPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 164 EPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|||++||+.+++.+.+++..++++|.|||++||+++++.+.+|
T Consensus 163 EPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d 205 (241)
T PRK10895 163 EPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCE 205 (241)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcC
Confidence 9999999999999999999988779999999999999988875
No 65
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=7.7e-51 Score=336.72 Aligned_cols=198 Identities=34% Similarity=0.575 Sum_probs=175.1
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067 11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL 90 (229)
Q Consensus 11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~ 90 (229)
|+++||++.|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.... ...+.+++|+
T Consensus 1 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~~i~~~ 78 (201)
T cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR--DSIARGLLYL 78 (201)
T ss_pred CEEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc--HHhhhheEEe
Confidence 57899999999999999999999999999999999999999999999999999999999999875422 2345679999
Q ss_pred ecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q 027067 91 SLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170 (229)
Q Consensus 91 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD 170 (229)
+|++.+++..|+.||+.++... .......++++.+++.+..++++.+||||||||++|||||+.+|+++||||||++||
T Consensus 79 ~q~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD 157 (201)
T cd03231 79 GHAPGIKTTLSVLENLRFWHAD-HSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALD 157 (201)
T ss_pred ccccccCCCcCHHHHHHhhccc-ccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 9998888889999999875321 123456778899999988899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhccCCCC
Q 027067 171 YDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNLRLPP 211 (229)
Q Consensus 171 ~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~~~~~ 211 (229)
+.+++.+.+++.+++++|.|+|++||+...+.++++..+.+
T Consensus 158 ~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 158 KAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 99999999999998777899999999998888877655443
No 66
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.2e-50 Score=343.66 Aligned_cols=197 Identities=25% Similarity=0.373 Sum_probs=173.7
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCch-hhhhhhcce
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI-FHQYKLQLN 88 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~-~~~~~~~~~ 88 (229)
+|+++|++++|+++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++..... ...++..++
T Consensus 1 ~l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 80 (240)
T PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAG 80 (240)
T ss_pred CEEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceE
Confidence 5889999999998899999999999999999999999999999999999999999999999998864221 123456799
Q ss_pred EeecccccCCCCCHHHhHHHHHH-hcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEV-LEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLL 162 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~-~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illl 162 (229)
|++|++.+++.+|+.||+.+... ... ....+.++++.+|+.+..++++.+||||||||++|||||+.+|+++||
T Consensus 81 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 160 (240)
T PRK09493 81 MVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLF 160 (240)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999988999999976432 111 112356789999998888999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 163 DEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 163 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
||||++||+.+++.+.+++.+++++|+|||++||+++++..++|
T Consensus 161 DEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d 204 (240)
T PRK09493 161 DEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVAS 204 (240)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999999987778999999999999988765
No 67
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.7e-51 Score=338.52 Aligned_cols=192 Identities=31% Similarity=0.478 Sum_probs=171.0
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067 11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL 90 (229)
Q Consensus 11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~ 90 (229)
|+++|++++|+++++++|+||+|++| +++|+||||||||||+++|+|+++|++|+|+++|+++.... ..++..++|+
T Consensus 1 i~~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~--~~~~~~i~~~ 77 (211)
T cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP--QKLRRRIGYL 77 (211)
T ss_pred CEEEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch--HHHHhheEEe
Confidence 57999999999889999999999999 99999999999999999999999999999999998876433 3345679999
Q ss_pred ecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCC
Q 027067 91 SLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEP 165 (229)
Q Consensus 91 ~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEP 165 (229)
+|++.+++.+|+.||+.+....... ...+.++++.+++.+..++++.+|||||||||+|||||+.+|++||||||
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 157 (211)
T cd03264 78 PQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEP 157 (211)
T ss_pred cCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999999889999999875433211 23456789999998888999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 166 SVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 166 t~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|++||+.+++.+.++++++++ +.|||++||+++++.+++|
T Consensus 158 t~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d 197 (211)
T cd03264 158 TAGLDPEERIRFRNLLSELGE-DRIVILSTHIVEDVESLCN 197 (211)
T ss_pred cccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCC
Confidence 999999999999999999876 5899999999999988776
No 68
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=8.6e-51 Score=341.75 Aligned_cols=194 Identities=30% Similarity=0.408 Sum_probs=169.4
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCC-----CCCccEEEEcCEeCCCCch-hhhhh
Q 027067 11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS-----KPSAGEILWNGHDITQSGI-FHQYK 84 (229)
Q Consensus 11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~-----~p~~G~I~~~g~~~~~~~~-~~~~~ 84 (229)
|+++||+++|+++++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|+++|+++..... ....+
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELR 80 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHH
Confidence 57899999999889999999999999999999999999999999999999 9999999999998764321 12345
Q ss_pred hcceEeecccccCCCCCHHHhHHHHHHhcC------ccccHHHHHHHhCCChhhcCC--CCCCChhHHHHHHHHHHHhcC
Q 027067 85 LQLNWLSLKDAVKEKFTVLDNVQWFEVLEG------KQGNSLPALELMGLGRLAKEK--ARMLSMGQRKRLQLARLLAID 156 (229)
Q Consensus 85 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~------~~~~~~~~l~~~~l~~~~~~~--~~~LSgGqkqRv~lAral~~~ 156 (229)
..++|++|++.++ .+|+.||+.+...... ...++.++++.+++.+..+++ +.+|||||||||+|||||+.+
T Consensus 81 ~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~ 159 (227)
T cd03260 81 RRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANE 159 (227)
T ss_pred hhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcC
Confidence 6799999998888 7899999987543221 123456788999998777776 599999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|++|||||||++||+.+++.+.+++++++++ .|||++||+++++...+|
T Consensus 160 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d 208 (227)
T cd03260 160 PEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVAD 208 (227)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCC
Confidence 9999999999999999999999999998776 899999999999888776
No 69
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-50 Score=363.83 Aligned_cols=196 Identities=31% Similarity=0.413 Sum_probs=175.7
Q ss_pred CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
.++|+++|++++|+++.+|+++||+|++||+++|+||||||||||||+|+|+.+|++|+|+++|+++.... ..++.+
T Consensus 17 ~~~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~---~~~r~i 93 (377)
T PRK11607 17 TPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVP---PYQRPI 93 (377)
T ss_pred CceEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC---HHHCCE
Confidence 35799999999999889999999999999999999999999999999999999999999999999986543 245689
Q ss_pred eEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLL 162 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illl 162 (229)
+|++|++.+|+++||.||+.+.....+. ..++.++++.+++.++.++++.+|||||||||+|||||+.+|++|||
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLL 173 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLL 173 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999999999986543221 23456789999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067 163 DEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 163 DEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~ 206 (229)
||||++||...++.+.+.+.++.+ .|.|+|+||||++++...+|
T Consensus 174 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laD 218 (377)
T PRK11607 174 DEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAG 218 (377)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCC
Confidence 999999999999999988888654 58999999999999888765
No 70
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-50 Score=346.58 Aligned_cols=191 Identities=26% Similarity=0.320 Sum_probs=170.2
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW 89 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 89 (229)
||+++|++++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ...++|
T Consensus 1 ml~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~------~~~~~~ 74 (255)
T PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP------GAERGV 74 (255)
T ss_pred CEEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC------CCcEEE
Confidence 58999999999988999999999999999999999999999999999999999999999999987532 134799
Q ss_pred eecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeC
Q 027067 90 LSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDE 164 (229)
Q Consensus 90 ~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDE 164 (229)
++|++.+++..|+.||+.+.....+. ..++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||
T Consensus 75 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDE 154 (255)
T PRK11248 75 VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDE 154 (255)
T ss_pred EeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99999888889999999865332211 1245678999999888899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEeCChhhHHhhhc
Q 027067 165 PSVALDYDGVRLLEYIIAEHR-KKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 165 Pt~~LD~~~~~~l~~~l~~~~-~~g~tii~vtH~~~~~~~~~~ 206 (229)
||++||+.+++.+.+++.++. +.|+|||++||+++++...+|
T Consensus 155 Pt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d 197 (255)
T PRK11248 155 PFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMAT 197 (255)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 999999999999999999974 458999999999999988765
No 71
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=1.1e-50 Score=339.32 Aligned_cols=194 Identities=29% Similarity=0.428 Sum_probs=171.9
Q ss_pred EEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 11 LLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 11 l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
|+++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++.... ..++..++
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~--~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR--KAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch--HHHhhhEE
Confidence 578999999987 78999999999999999999999999999999999999999999999999876432 33456799
Q ss_pred EeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEe
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLD 163 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlD 163 (229)
|++|++.+++..|+.||+.+....... ...+.++++.+++.+..++++.+||+||||||+|||||+.+|++||||
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 158 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLD 158 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 999999998899999999875433221 123567889999988889999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067 164 EPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 164 EPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~ 207 (229)
|||++||+.+++.+.++++++++ +.|||++||+++.+.+++|.
T Consensus 159 EP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~ 201 (220)
T cd03263 159 EPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMDEAEALCDR 201 (220)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhcCE
Confidence 99999999999999999999865 58999999999999887763
No 72
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=2.5e-50 Score=339.16 Aligned_cols=198 Identities=24% Similarity=0.331 Sum_probs=171.3
Q ss_pred CCcEEEEeEEEEeCC----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhh--
Q 027067 8 LPRLLLKNVSCMRNA----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFH-- 81 (229)
Q Consensus 8 ~~~l~l~~l~~~~~~----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~-- 81 (229)
.++|+++||+++|++ .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.......
T Consensus 4 ~~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 83 (228)
T PRK10584 4 ENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARA 83 (228)
T ss_pred CceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHH
Confidence 358999999999975 36999999999999999999999999999999999999999999999999886543211
Q ss_pred hh-hhcceEeecccccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhc
Q 027067 82 QY-KLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAI 155 (229)
Q Consensus 82 ~~-~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~ 155 (229)
.+ ...++|++|++.+++.+|+.||+.+...... ...++.++++.+++.+..++++.+||||||||++|||||+.
T Consensus 84 ~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~ 163 (228)
T PRK10584 84 KLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNG 163 (228)
T ss_pred HHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 12 2469999999999998999999976532221 12345678999999988899999999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
+|++|||||||+|||+.+++.+.+++.+++++ |.|||++||++++++. +|
T Consensus 164 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~-~d 214 (228)
T PRK10584 164 RPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAAR-CD 214 (228)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CC
Confidence 99999999999999999999999999998654 8899999999998754 55
No 73
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.9e-50 Score=344.28 Aligned_cols=197 Identities=25% Similarity=0.353 Sum_probs=173.2
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCc-------hhhh
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG-------IFHQ 82 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~-------~~~~ 82 (229)
+++++||+++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... ....
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQ 82 (250)
T ss_pred cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHH
Confidence 799999999999889999999999999999999999999999999999999999999999999875321 0123
Q ss_pred hhhcceEeecccccCCCCCHHHhHHHHHH-hcC-c----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcC
Q 027067 83 YKLQLNWLSLKDAVKEKFTVLDNVQWFEV-LEG-K----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAID 156 (229)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~tv~e~l~~~~~-~~~-~----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 156 (229)
.+..++|++|++.+++..|+.||+.+... ... . ...+.++++.+++....++++.+|||||||||+|||||+.+
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~ 162 (250)
T PRK11264 83 LRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMR 162 (250)
T ss_pred hhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcC
Confidence 45679999999999988999999976432 111 1 12356778999998888999999999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|++|||||||++||+.+++.+.+++.++.++|.|||++||+++++.+++|
T Consensus 163 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d 212 (250)
T PRK11264 163 PEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVAD 212 (250)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcC
Confidence 99999999999999999999999999987778999999999999988765
No 74
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-50 Score=348.13 Aligned_cols=193 Identities=30% Similarity=0.340 Sum_probs=171.6
Q ss_pred CCCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067 7 PLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ 86 (229)
Q Consensus 7 ~~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 86 (229)
..++|+++||+++|+++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|.++. ..+..
T Consensus 9 ~~~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~------~~~~~ 82 (257)
T PRK11247 9 QGTPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA------EARED 82 (257)
T ss_pred CCCcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH------HhhCc
Confidence 446899999999999889999999999999999999999999999999999999999999999987753 23457
Q ss_pred ceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCC
Q 027067 87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPS 166 (229)
Q Consensus 87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt 166 (229)
++|++|++.+++..|+.||+.+... .....++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 83 i~~v~q~~~l~~~~tv~enl~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt 161 (257)
T PRK11247 83 TRLMFQDARLLPWKKVIDNVGLGLK-GQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPL 161 (257)
T ss_pred eEEEecCccCCCCCcHHHHHHhccc-chHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 8999999999888999999986421 112235677899999998899999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067 167 VALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 167 ~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~ 206 (229)
++||+.+++.+.+++.++.+ .+.|||++|||++++..++|
T Consensus 162 ~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d 202 (257)
T PRK11247 162 GALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMAD 202 (257)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence 99999999999999998754 58999999999999887653
No 75
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2e-50 Score=337.23 Aligned_cols=198 Identities=31% Similarity=0.541 Sum_probs=175.9
Q ss_pred CCCCCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhh
Q 027067 5 KPPLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK 84 (229)
Q Consensus 5 ~~~~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~ 84 (229)
.+..++|+++|++++|+++++++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++... ..+
T Consensus 6 ~~~~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~----~~~ 81 (214)
T PRK13543 6 HTAPPLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG----DRS 81 (214)
T ss_pred CCCcceEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch----hhh
Confidence 3455789999999999988999999999999999999999999999999999999999999999999987642 123
Q ss_pred hcceEeecccccCCCCCHHHhHHHHHHhcCc--cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067 85 LQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK--QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLL 162 (229)
Q Consensus 85 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illl 162 (229)
..++|++|++.+++.+|+.||+.+....... .....++++.+++.+..++++.+||+||||||+||||++.+|++|||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 161 (214)
T PRK13543 82 RFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLL 161 (214)
T ss_pred hceEEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 4689999998888889999999875433221 23346788999998888999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 163 DEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 163 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
||||++||+.+++.+.+++.+++++|.|||++||+++++.++++
T Consensus 162 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~ 205 (214)
T PRK13543 162 DEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRT 205 (214)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcc
Confidence 99999999999999999999988888999999999999988776
No 76
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-50 Score=342.98 Aligned_cols=199 Identities=25% Similarity=0.298 Sum_probs=173.2
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
++++++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.........+..++
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (237)
T PRK11614 4 VMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVA 83 (237)
T ss_pred cEEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEE
Confidence 57999999999998899999999999999999999999999999999999999999999999998865433222456799
Q ss_pred EeecccccCCCCCHHHhHHHHHHhcC---ccccHHHHHHHh-CCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeC
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEVLEG---KQGNSLPALELM-GLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDE 164 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~l~~~-~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDE 164 (229)
|++|++.+++..|+.||+.+...... ....+.++++.+ ++.+..++++.+||||||||++|||||+.+|++|||||
T Consensus 84 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDE 163 (237)
T PRK11614 84 IVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDE 163 (237)
T ss_pred EeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 99999999988999999976432111 112344567777 57777888999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067 165 PSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 165 Pt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~ 207 (229)
||++||+.+++.+.+++++++++|.|||++||+++++.+++|.
T Consensus 164 Pt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~ 206 (237)
T PRK11614 164 PSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADR 206 (237)
T ss_pred ccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCE
Confidence 9999999999999999999877799999999999999988763
No 77
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=2.3e-50 Score=341.31 Aligned_cols=194 Identities=28% Similarity=0.398 Sum_probs=170.9
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW 89 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 89 (229)
+|+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..... .....++|
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~--~~~~~i~~ 78 (236)
T TIGR03864 1 ALEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPR--AALARLGV 78 (236)
T ss_pred CEEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCCh--hhhhhEEE
Confidence 5889999999998999999999999999999999999999999999999999999999999998764321 22347899
Q ss_pred eecccccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeC
Q 027067 90 LSLKDAVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDE 164 (229)
Q Consensus 90 ~~~~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDE 164 (229)
++|++.+++.+|+.||+.+...... ....+.++++.+|+.+..++++.+||||||||++|||||+.+|+++||||
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE 158 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDE 158 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9999888888999999987543321 12235678899999988899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067 165 PSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 165 Pt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~ 206 (229)
||++||+.+++.+.+++.++++ +|.|||++||+++++.. +|
T Consensus 159 P~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d 200 (236)
T TIGR03864 159 PTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DD 200 (236)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CC
Confidence 9999999999999999999864 58999999999999875 54
No 78
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1.1e-50 Score=355.38 Aligned_cols=187 Identities=25% Similarity=0.370 Sum_probs=167.8
Q ss_pred EEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccC
Q 027067 18 CMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVK 97 (229)
Q Consensus 18 ~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (229)
++|+++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.... ...+..++|++|++.++
T Consensus 1 k~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREP--RKVRRSIGIVPQYASVD 78 (302)
T ss_pred CeeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCH--HHHHhhcEEecCCCCCC
Confidence 4688889999999999999999999999999999999999999999999999999886432 23456799999999999
Q ss_pred CCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q 027067 98 EKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYD 172 (229)
Q Consensus 98 ~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~ 172 (229)
+.+|+.||+.+.....+. ..++.++++.+++.+..++++.+|||||||||+||+||+.+|++|||||||+|||+.
T Consensus 79 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~ 158 (302)
T TIGR01188 79 EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPR 158 (302)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHH
Confidence 999999999876543321 124567899999998899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 173 GVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 173 ~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
+++.+.+++++++++|.|||++||+++++++.+|
T Consensus 159 ~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d 192 (302)
T TIGR01188 159 TRRAIWDYIRALKEEGVTILLTTHYMEEADKLCD 192 (302)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCC
Confidence 9999999999998779999999999999998764
No 79
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=2.8e-50 Score=338.32 Aligned_cols=197 Identities=26% Similarity=0.367 Sum_probs=169.3
Q ss_pred cEEEEeEEEEeCCe----eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCch--hhhh
Q 027067 10 RLLLKNVSCMRNAQ----QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI--FHQY 83 (229)
Q Consensus 10 ~l~l~~l~~~~~~~----~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~--~~~~ 83 (229)
+|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..... ...+
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 47899999999765 79999999999999999999999999999999999999999999999998865331 1234
Q ss_pred hhcceEeeccc--ccCCCCCHHHhHHHHHHhcC--c-cc---c-HHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHH
Q 027067 84 KLQLNWLSLKD--AVKEKFTVLDNVQWFEVLEG--K-QG---N-SLPALELMGLG-RLAKEKARMLSMGQRKRLQLARLL 153 (229)
Q Consensus 84 ~~~~~~~~~~~--~~~~~~tv~e~l~~~~~~~~--~-~~---~-~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral 153 (229)
+..++|++|++ .+++.+|+++|+.+...... . .. . ..++++.+++. ...++++.+|||||||||+|||||
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral 160 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL 160 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHH
Confidence 56799999998 46678899999976533221 1 11 1 13678889995 678999999999999999999999
Q ss_pred hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
+.+|++|||||||++||+.+++.+.+++.+++++ |.|||++||+++++...+|
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d 214 (228)
T cd03257 161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIAD 214 (228)
T ss_pred hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcC
Confidence 9999999999999999999999999999998765 8999999999999988776
No 80
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.5e-50 Score=339.61 Aligned_cols=196 Identities=22% Similarity=0.317 Sum_probs=171.0
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067 11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL 90 (229)
Q Consensus 11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~ 90 (229)
|+++||++.|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.........+..++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (230)
T TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYV 80 (230)
T ss_pred CEEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEe
Confidence 57899999999889999999999999999999999999999999999999999999999999886543222234579999
Q ss_pred ecccccCCCCCHHHhHHHHHHhcCc--cccHHHHHHHhC-CChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCC
Q 027067 91 SLKDAVKEKFTVLDNVQWFEVLEGK--QGNSLPALELMG-LGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSV 167 (229)
Q Consensus 91 ~~~~~~~~~~tv~e~l~~~~~~~~~--~~~~~~~l~~~~-l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~ 167 (229)
+|++.+++.+|+.||+.+....... .....++++.++ +.+..++++.+||||||||++|||||+.+|+++||||||+
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~ 160 (230)
T TIGR03410 81 PQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTE 160 (230)
T ss_pred ccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcc
Confidence 9999999989999999875433221 122456777776 5777899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 168 ALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 168 ~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
+||+.+++.+.+++.+++++ +.|||++||+++++..++|
T Consensus 161 ~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d 200 (230)
T TIGR03410 161 GIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELAD 200 (230)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCC
Confidence 99999999999999998764 8999999999999988775
No 81
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-50 Score=347.94 Aligned_cols=196 Identities=27% Similarity=0.334 Sum_probs=171.7
Q ss_pred cEEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 10 RLLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 10 ~l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
+++++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..... ...+..++
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENE-KWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCH-HHHHhhEE
Confidence 799999999996 5789999999999999999999999999999999999999999999999999865432 23456799
Q ss_pred Eeecccc-cCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067 89 WLSLKDA-VKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLL 162 (229)
Q Consensus 89 ~~~~~~~-~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illl 162 (229)
|++|++. .+...|+.||+.+...... ...++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llll 162 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVL 162 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999863 3456799999987543211 123456789999999889999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 163 DEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 163 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
||||++||+.++..+.+++.+++++|.|||++||+++++.+++|
T Consensus 163 DEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d 206 (274)
T PRK13647 163 DEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWAD 206 (274)
T ss_pred ECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999999987778999999999999988764
No 82
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-50 Score=341.42 Aligned_cols=195 Identities=27% Similarity=0.384 Sum_probs=172.0
Q ss_pred EEEEeEEEEeCC-eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067 11 LLLKNVSCMRNA-QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW 89 (229)
Q Consensus 11 l~l~~l~~~~~~-~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 89 (229)
++++||+++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..... ...+..++|
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~-~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDP-VELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCCh-HHhhcceEE
Confidence 478999999988 789999999999999999999999999999999999999999999999998764332 234557899
Q ss_pred eecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCCh--hhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067 90 LSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGR--LAKEKARMLSMGQRKRLQLARLLAIDRPIWLL 162 (229)
Q Consensus 90 ~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~--~~~~~~~~LSgGqkqRv~lAral~~~p~illl 162 (229)
++|++.+++..|+.||+.++...... ...+.++++.+++.. ..++++.+|||||||||+|||||+.+|++|||
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 159 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLM 159 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 99999999889999999875433221 124567899999985 78999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 163 DEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 163 DEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
||||++||+.+++.+.+++.+++++ |.|||++||+++++..++|
T Consensus 160 DEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d 204 (242)
T cd03295 160 DEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLAD 204 (242)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCC
Confidence 9999999999999999999998764 8999999999999888775
No 83
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.8e-52 Score=335.79 Aligned_cols=199 Identities=27% Similarity=0.406 Sum_probs=183.8
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
+.|.++|+.|+|++++++++|||+|++||++|++|||||||||.+.++.|+.+|++|+|.++|.+++..+...+.+.+++
T Consensus 3 ~~L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGig 82 (243)
T COG1137 3 STLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIG 82 (243)
T ss_pred cEEEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999988888899999
Q ss_pred EeecccccCCCCCHHHhHHHHHHhcC-c----c--ccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEE
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEVLEG-K----Q--GNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWL 161 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~~~~-~----~--~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ill 161 (229)
|+||++++|..+||+||+........ . + .+..++|+.|++.+.++++..+||||||+|+.|||||+.+|+.+|
T Consensus 83 YLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiL 162 (243)
T COG1137 83 YLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFIL 162 (243)
T ss_pred cccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999986544322 1 1 124578999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067 162 LDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 162 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~ 207 (229)
|||||+|.||.+...+.+++..++.+|..|+++-|+..+.-..+|-
T Consensus 163 LDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dR 208 (243)
T COG1137 163 LDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDR 208 (243)
T ss_pred ecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhhe
Confidence 9999999999999999999999999999999999998888777753
No 84
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.5e-51 Score=339.92 Aligned_cols=208 Identities=28% Similarity=0.402 Sum_probs=186.8
Q ss_pred CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
.+++++++|+++||+-.+++||||++++||+++||||||||||||+|+|+|+++|++|+|.++|++++..+..+..+..+
T Consensus 2 ~~lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 2 TPLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred CceeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 35799999999999999999999999999999999999999999999999999999999999999999988777778889
Q ss_pred eEeecccccCCCCCHHHhHHHHHHhc-----------------CccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHH
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFEVLE-----------------GKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLA 150 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~~~~-----------------~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lA 150 (229)
.-.+|...+|+++||.||+......+ ...+++.++|+++||.+.++++..+||+|||+|+.||
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIA 161 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIA 161 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHH
Confidence 99999999999999999997653211 0113456789999999999999999999999999999
Q ss_pred HHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhccCCCCCCCC
Q 027067 151 RLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMNLRLPPRFPR 215 (229)
Q Consensus 151 ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~~~~~~~~~~ 215 (229)
|||+.+|++|+||||.+||.+...+.+.+++++++++ |.||++|.||++.+...+|.=..-.+++
T Consensus 162 rALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~ 227 (250)
T COG0411 162 RALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGE 227 (250)
T ss_pred HHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCc
Confidence 9999999999999999999999999999999999874 6999999999999999987544444444
No 85
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=2.9e-50 Score=333.54 Aligned_cols=193 Identities=30% Similarity=0.375 Sum_probs=167.8
Q ss_pred EEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCc---hhhhhhhcceE
Q 027067 13 LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG---IFHQYKLQLNW 89 (229)
Q Consensus 13 l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~---~~~~~~~~~~~ 89 (229)
++||++.|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... .....++.++|
T Consensus 1 i~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 80 (206)
T TIGR03608 1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGY 80 (206)
T ss_pred CcceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeE
Confidence 479999999889999999999999999999999999999999999999999999999999864321 11224567999
Q ss_pred eecccccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeC
Q 027067 90 LSLKDAVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDE 164 (229)
Q Consensus 90 ~~~~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDE 164 (229)
++|++.+++..|+.||+.+...... ...++.++++.+++.+..++++.+||+|||||++|||||+.+|++|||||
T Consensus 81 ~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDE 160 (206)
T TIGR03608 81 LFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADE 160 (206)
T ss_pred EecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 9999999998999999987543221 12345678999999988999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 165 PSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 165 Pt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
||++||+.+++.+.++++++.++|.|+|++||+++.+. .+|
T Consensus 161 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~~d 201 (206)
T TIGR03608 161 PTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAK-QAD 201 (206)
T ss_pred CcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh-hcC
Confidence 99999999999999999998777899999999998653 444
No 86
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=3.6e-50 Score=331.75 Aligned_cols=190 Identities=35% Similarity=0.647 Sum_probs=168.7
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067 11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL 90 (229)
Q Consensus 11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~ 90 (229)
|+++|+++.|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ..++..++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~~i~~~ 78 (198)
T TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR--DEPHRNILYL 78 (198)
T ss_pred CEEEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch--HHhhhheEEe
Confidence 57899999999999999999999999999999999999999999999999999999999999876432 2345678999
Q ss_pred ecccccCCCCCHHHhHHHHHHhcCc-cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 027067 91 SLKDAVKEKFTVLDNVQWFEVLEGK-QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVAL 169 (229)
Q Consensus 91 ~~~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~L 169 (229)
+|++.+++..|+.||+.+....... ...+.++++.+++.+..++++.+|||||||||+||||++.+|+++||||||++|
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 158 (198)
T TIGR01189 79 GHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTAL 158 (198)
T ss_pred ccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 9988888889999999876543322 234677899999998899999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHH
Q 027067 170 DYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIE 202 (229)
Q Consensus 170 D~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~ 202 (229)
|+.+++.+.+++.+++++|.|||++||+...+.
T Consensus 159 D~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~ 191 (198)
T TIGR01189 159 DKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV 191 (198)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEEccccccc
Confidence 999999999999998777899999999875443
No 87
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=5.8e-50 Score=332.89 Aligned_cols=190 Identities=39% Similarity=0.677 Sum_probs=170.2
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW 89 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 89 (229)
+|+++||++.|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ..+.+++|
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~----~~~~~~~~ 77 (207)
T PRK13539 2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDP----DVAEACHY 77 (207)
T ss_pred EEEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcch----hhHhhcEE
Confidence 68999999999988999999999999999999999999999999999999999999999999886421 14567899
Q ss_pred eecccccCCCCCHHHhHHHHHHhcC-ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 027067 90 LSLKDAVKEKFTVLDNVQWFEVLEG-KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVA 168 (229)
Q Consensus 90 ~~~~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~ 168 (229)
+++++.+++..|+.||+.+...... ....+.++++.+|+.+..++++.+||||||||++||||++.+|+++||||||++
T Consensus 78 ~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 157 (207)
T PRK13539 78 LGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAA 157 (207)
T ss_pred ecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9988888888999999987543322 223467889999998888999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067 169 LDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 169 LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~ 203 (229)
||+.+++.+.+++.+++++|.|||++||+++++..
T Consensus 158 LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~ 192 (207)
T PRK13539 158 LDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG 192 (207)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc
Confidence 99999999999999987779999999999988876
No 88
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=7.1e-50 Score=342.93 Aligned_cols=196 Identities=29% Similarity=0.346 Sum_probs=172.6
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW 89 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 89 (229)
+|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|+++|.++..... ...+..++|
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~-~~~~~~i~~ 80 (258)
T PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSP-AELARRRAV 80 (258)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCH-HHhhhheEE
Confidence 6899999999998899999999999999999999999999999999999999999999999998764332 223457899
Q ss_pred eecccccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHh------cCCC
Q 027067 90 LSLKDAVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLA------IDRP 158 (229)
Q Consensus 90 ~~~~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~------~~p~ 158 (229)
++|++.+++.+|+.||+.+...... ....+.++++.+++.+..++++.+|||||||||+|||||+ .+|+
T Consensus 81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~ 160 (258)
T PRK13548 81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPR 160 (258)
T ss_pred EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCC
Confidence 9999888888899999987532111 1123567889999998899999999999999999999999 5999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEeCChhhHHhhhc
Q 027067 159 IWLLDEPSVALDYDGVRLLEYIIAEHR-KKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 159 illlDEPt~~LD~~~~~~l~~~l~~~~-~~g~tii~vtH~~~~~~~~~~ 206 (229)
+|||||||++||+.+++.+.+++.+++ ++|.|||++||+++++...+|
T Consensus 161 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d 209 (258)
T PRK13548 161 WLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYAD 209 (258)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcC
Confidence 999999999999999999999999987 678999999999999988765
No 89
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-50 Score=340.47 Aligned_cols=197 Identities=25% Similarity=0.345 Sum_probs=172.3
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCC-----chhhhhh
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQS-----GIFHQYK 84 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~-----~~~~~~~ 84 (229)
+|+++|+++.|+++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|+++|+++... ......+
T Consensus 2 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (242)
T PRK11124 2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELR 81 (242)
T ss_pred EEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHH
Confidence 58999999999988999999999999999999999999999999999999999999999999987311 0112345
Q ss_pred hcceEeecccccCCCCCHHHhHHHHH-HhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCC
Q 027067 85 LQLNWLSLKDAVKEKFTVLDNVQWFE-VLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRP 158 (229)
Q Consensus 85 ~~~~~~~~~~~~~~~~tv~e~l~~~~-~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 158 (229)
.+++|++|++.+++.+|+.||+.+.. .... ....+.++++.+|+.+..++.+.+||||||||++|||||+.+|+
T Consensus 82 ~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~ 161 (242)
T PRK11124 82 RNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQ 161 (242)
T ss_pred hheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 67999999999999999999997432 1111 12235678899999988999999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 159 IWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 159 illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
++||||||++||+.+++.+.+++.+++++|+|+|++||+++++.+.+|
T Consensus 162 llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d 209 (242)
T PRK11124 162 VLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTAS 209 (242)
T ss_pred EEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcC
Confidence 999999999999999999999999987778999999999999988765
No 90
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-50 Score=343.15 Aligned_cols=196 Identities=29% Similarity=0.369 Sum_probs=172.7
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW 89 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 89 (229)
+|+++|++++|+++.+|+++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++..... ...+..++|
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~-~~~~~~i~~ 80 (255)
T PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSS-RQLARRLAL 80 (255)
T ss_pred EEEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCH-HHHhhheEE
Confidence 6899999999999999999999999999999999999999999999999999999999999998754322 233456899
Q ss_pred eecccccCCCCCHHHhHHHHHH----hcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeE
Q 027067 90 LSLKDAVKEKFTVLDNVQWFEV----LEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIW 160 (229)
Q Consensus 90 ~~~~~~~~~~~tv~e~l~~~~~----~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~il 160 (229)
++|++.+++.+|+.||+.+... ... ....+.++++.+++.+..++++.+|||||+|||+||||++.+|++|
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 160 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVV 160 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999888888899999976421 111 1223567888999988899999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 161 LLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 161 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
||||||+|||+.+++.+.+++.+++++|.|||++||+++++.+++|
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d 206 (255)
T PRK11231 161 LLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCD 206 (255)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcC
Confidence 9999999999999999999999987778999999999999988775
No 91
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.4e-50 Score=347.21 Aligned_cols=197 Identities=26% Similarity=0.405 Sum_probs=169.4
Q ss_pred cEEEEeEEEEeCC-----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCch-hhhh
Q 027067 10 RLLLKNVSCMRNA-----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI-FHQY 83 (229)
Q Consensus 10 ~l~l~~l~~~~~~-----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~-~~~~ 83 (229)
.|+++||++.|++ +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++..... ....
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 4899999999974 479999999999999999999999999999999999999999999999999865321 1234
Q ss_pred hhcceEeecccc-cCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCC--hhhcCCCCCCChhHHHHHHHHHHHhc
Q 027067 84 KLQLNWLSLKDA-VKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLG--RLAKEKARMLSMGQRKRLQLARLLAI 155 (229)
Q Consensus 84 ~~~~~~~~~~~~-~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~--~~~~~~~~~LSgGqkqRv~lAral~~ 155 (229)
+..++|++|++. .+...||.||+.+.....+ ...++.++++.+|+. +..++++.+||||||||++|||||+.
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~ 161 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAM 161 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHc
Confidence 568999999863 2335699999987543222 113456789999997 67899999999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
+|++|||||||++||+.++..+.+++++++++ |.|||++|||++++..++|
T Consensus 162 ~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d 213 (287)
T PRK13637 162 EPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLAD 213 (287)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999999999999998765 8999999999999988764
No 92
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-49 Score=346.94 Aligned_cols=196 Identities=26% Similarity=0.386 Sum_probs=169.2
Q ss_pred cEEEEeEEEEeCC-----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCC---chhh
Q 027067 10 RLLLKNVSCMRNA-----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQS---GIFH 81 (229)
Q Consensus 10 ~l~l~~l~~~~~~-----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~ 81 (229)
+++++||+++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++... ....
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 5899999999974 4699999999999999999999999999999999999999999999999987532 1112
Q ss_pred hhhhcceEeeccc--ccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHH
Q 027067 82 QYKLQLNWLSLKD--AVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARLL 153 (229)
Q Consensus 82 ~~~~~~~~~~~~~--~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral 153 (229)
..+..++|++|++ .++ ..|+.||+.+...... ....+.++++.+++. +..++++.+|||||||||+|||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral 160 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVM 160 (287)
T ss_pred HHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHH
Confidence 3456799999986 344 5799999986543221 122456789999997 688999999999999999999999
Q ss_pred hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
+.+|++|||||||+|||+.+++.+.+++++++++|.|||++||+++++...+|
T Consensus 161 ~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d 213 (287)
T PRK13641 161 AYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYAD 213 (287)
T ss_pred HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999999999999999987779999999999999988765
No 93
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=1.4e-49 Score=338.68 Aligned_cols=196 Identities=27% Similarity=0.364 Sum_probs=171.2
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCC-----ccEEEEcCEeCCCCc-hhhhh
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPS-----AGEILWNGHDITQSG-IFHQY 83 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~-----~G~I~~~g~~~~~~~-~~~~~ 83 (229)
+++++||+++|+++.+++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|+++|+++.... .....
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~ 80 (247)
T TIGR00972 1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVEL 80 (247)
T ss_pred CEEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHH
Confidence 589999999999889999999999999999999999999999999999999998 999999999886421 11234
Q ss_pred hhcceEeecccccCCCCCHHHhHHHHHHhcC--c----cccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHHHHH
Q 027067 84 KLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG--K----QGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLARLL 153 (229)
Q Consensus 84 ~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~--~----~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lAral 153 (229)
+..++|++|++.+++ .|+.||+.+.....+ . ...+.++++.+++. +..++++.+|||||||||+|||||
T Consensus 81 ~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 159 (247)
T TIGR00972 81 RRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARAL 159 (247)
T ss_pred HhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 567999999988888 899999987543221 1 12356788999997 778999999999999999999999
Q ss_pred hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067 154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~ 207 (229)
+.+|+++||||||++||+.+++.+.+++.++++ +.|||++||+++++..++|.
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~ 212 (247)
T TIGR00972 160 AVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQQAARISDR 212 (247)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHHHHHHhCCE
Confidence 999999999999999999999999999999876 48999999999999887753
No 94
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-49 Score=351.03 Aligned_cols=200 Identities=23% Similarity=0.303 Sum_probs=171.2
Q ss_pred CCCCcEEEEeEEEEeCC-----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCC---
Q 027067 6 PPLPRLLLKNVSCMRNA-----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQS--- 77 (229)
Q Consensus 6 ~~~~~l~l~~l~~~~~~-----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~--- 77 (229)
+..++|+++||+++|++ .++|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++...
T Consensus 17 ~~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~ 96 (320)
T PRK13631 17 SDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNN 96 (320)
T ss_pred CCCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccc
Confidence 34578999999999964 3699999999999999999999999999999999999999999999999987532
Q ss_pred ------------chhhhhhhcceEeeccc--ccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCC-hhhcCCCC
Q 027067 78 ------------GIFHQYKLQLNWLSLKD--AVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLG-RLAKEKAR 137 (229)
Q Consensus 78 ------------~~~~~~~~~~~~~~~~~--~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~-~~~~~~~~ 137 (229)
......+..++|++|++ .+++ .|+.||+.+...... ....+.++++.+++. ...++++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~ 175 (320)
T PRK13631 97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPF 175 (320)
T ss_pred ccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcc
Confidence 11234567899999986 4555 499999987543211 112456788999996 68899999
Q ss_pred CCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 138 MLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 138 ~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
+|||||||||+|||||+.+|++|||||||++||+.+++.+.+++.+++++|.|||++||+++++...+|
T Consensus 176 ~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~ad 244 (320)
T PRK13631 176 GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVAD 244 (320)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999987779999999999998877654
No 95
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=1.5e-49 Score=340.49 Aligned_cols=198 Identities=27% Similarity=0.382 Sum_probs=173.1
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCc----------
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG---------- 78 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~---------- 78 (229)
.+|+++||++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|+++....
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 83 (257)
T PRK10619 4 NKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVAD 83 (257)
T ss_pred ccEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccccc
Confidence 4699999999999999999999999999999999999999999999999999999999999999875310
Q ss_pred --hhhhhhhcceEeecccccCCCCCHHHhHHHHHH-hcC-----ccccHHHHHHHhCCChhh-cCCCCCCChhHHHHHHH
Q 027067 79 --IFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEV-LEG-----KQGNSLPALELMGLGRLA-KEKARMLSMGQRKRLQL 149 (229)
Q Consensus 79 --~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~-~~~-----~~~~~~~~l~~~~l~~~~-~~~~~~LSgGqkqRv~l 149 (229)
....++..++|++|++.+++.+|++||+.+... ... ...++.++++.+|+.+.. ++++.+||||||||++|
T Consensus 84 ~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~l 163 (257)
T PRK10619 84 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSI 163 (257)
T ss_pred chHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHH
Confidence 112345679999999999998999999976431 111 123456789999998764 88999999999999999
Q ss_pred HHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 150 ARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 150 Aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
||||+.+|++|||||||++||+.+++.+.+++++++++|+|||++||+++++..++|
T Consensus 164 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d 220 (257)
T PRK10619 164 ARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSS 220 (257)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcC
Confidence 999999999999999999999999999999999997779999999999999988765
No 96
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.2e-50 Score=333.04 Aligned_cols=192 Identities=29% Similarity=0.393 Sum_probs=168.4
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067 11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL 90 (229)
Q Consensus 11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~ 90 (229)
++++|++++|+++.. |+||+|.+||+++|+||||||||||+++|+|+++|++|+|+++|+++..... .+..++|+
T Consensus 1 i~~~~l~~~~~~~~~--~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~---~~~~i~~~ 75 (211)
T cd03298 1 VRLDKIRFSYGEQPM--HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP---ADRPVSML 75 (211)
T ss_pred CEEEeEEEEeCCEec--ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH---hHccEEEE
Confidence 478999999987653 9999999999999999999999999999999999999999999998865332 24579999
Q ss_pred ecccccCCCCCHHHhHHHHHHhc-C----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCC
Q 027067 91 SLKDAVKEKFTVLDNVQWFEVLE-G----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEP 165 (229)
Q Consensus 91 ~~~~~~~~~~tv~e~l~~~~~~~-~----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEP 165 (229)
+|++.+++.+|+.||+.+..... . ...++.++++.+++.+..++++.+||||||||++|||||+.+|++||||||
T Consensus 76 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP 155 (211)
T cd03298 76 FQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEP 155 (211)
T ss_pred ecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 99999999999999997643211 1 123456789999999889999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhcc
Q 027067 166 SVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 166 t~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~~ 207 (229)
|++||+.+++.+.+++.++++ .+.|||++||+++++.+++|.
T Consensus 156 ~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~ 198 (211)
T cd03298 156 FAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQR 198 (211)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCE
Confidence 999999999999999999865 489999999999999887763
No 97
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=1.2e-49 Score=337.60 Aligned_cols=196 Identities=21% Similarity=0.298 Sum_probs=168.1
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCC--CCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS--KPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~--~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+|+|+|++ +|++|+|+++|+++.........+..++
T Consensus 1 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (243)
T TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLF 80 (243)
T ss_pred CeEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceE
Confidence 57899999999889999999999999999999999999999999999995 7999999999998865432222234588
Q ss_pred EeecccccCCCCCHHHhHHHHHHhcC--------c----cccHHHHHHHhCCC-hhhcCCCC-CCChhHHHHHHHHHHHh
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEVLEG--------K----QGNSLPALELMGLG-RLAKEKAR-MLSMGQRKRLQLARLLA 154 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~~~~--------~----~~~~~~~l~~~~l~-~~~~~~~~-~LSgGqkqRv~lAral~ 154 (229)
|++|++.+++..|+.||+.+...... . ...+.++++.+++. ...++++. +|||||||||+|||||+
T Consensus 81 ~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~ 160 (243)
T TIGR01978 81 LAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMAL 160 (243)
T ss_pred eeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHh
Confidence 99999999999999999876432110 0 12345678889997 56788887 59999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh-hc
Q 027067 155 IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA-MN 206 (229)
Q Consensus 155 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~-~~ 206 (229)
.+|++|||||||++||+.+++.+.+++++++++|.|||++||+++.+..+ +|
T Consensus 161 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d 213 (243)
T TIGR01978 161 LEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPD 213 (243)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCC
Confidence 99999999999999999999999999999987789999999999999886 44
No 98
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-49 Score=338.50 Aligned_cols=195 Identities=28% Similarity=0.432 Sum_probs=171.0
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW 89 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 89 (229)
+++++|++++|+++.+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|+++|+++..... ...+..++|
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~-~~~~~~i~~ 81 (241)
T PRK14250 3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDV-IDLRRKIGM 81 (241)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCh-HHhhhcEEE
Confidence 5899999999998899999999999999999999999999999999999999999999999998764332 234567999
Q ss_pred eecccccCCCCCHHHhHHHHHHhcC-ccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCC
Q 027067 90 LSLKDAVKEKFTVLDNVQWFEVLEG-KQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSV 167 (229)
Q Consensus 90 ~~~~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~ 167 (229)
++|++.+++ .|+.||+.+...... ...++.++++.+++. +..++++.+||||||||++|||||+.+|++|||||||+
T Consensus 82 ~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 160 (241)
T PRK14250 82 VFQQPHLFE-GTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTS 160 (241)
T ss_pred EecCchhch-hhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 999988876 599999876433221 123456789999996 67899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 168 ALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 168 ~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
+||+.+++.+.+.+++++++ |.|||++||+++++.+++|
T Consensus 161 ~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d 200 (241)
T PRK14250 161 ALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGD 200 (241)
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCC
Confidence 99999999999999998764 8999999999999888765
No 99
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=4.8e-50 Score=358.50 Aligned_cols=189 Identities=25% Similarity=0.309 Sum_probs=168.1
Q ss_pred EEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhh---hhhcceEeeccc
Q 027067 18 CMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQ---YKLQLNWLSLKD 94 (229)
Q Consensus 18 ~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~---~~~~~~~~~~~~ 94 (229)
|+|+++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+.... .++.++|++|++
T Consensus 1 ~~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred CccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 46888999999999999999999999999999999999999999999999999999876543211 156899999999
Q ss_pred ccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 027067 95 AVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVAL 169 (229)
Q Consensus 95 ~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~L 169 (229)
.+++++||.||+.+.....+. ..++.++++.+||..+.++++.+|||||||||+|||||+.+|++|||||||++|
T Consensus 81 ~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saL 160 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSAL 160 (363)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 999999999999886544321 234678899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 170 DYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 170 D~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
|+.+++.+.+.+.+++++ |+|||++|||++++...+|
T Consensus 161 D~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~d 198 (363)
T TIGR01186 161 DPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGD 198 (363)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 999999999999998654 8999999999999888764
No 100
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=1.3e-49 Score=334.00 Aligned_cols=191 Identities=28% Similarity=0.447 Sum_probs=171.7
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067 11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL 90 (229)
Q Consensus 11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~ 90 (229)
|+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.... ...++|+
T Consensus 1 l~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~-----~~~~~~~ 75 (223)
T TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD-----LHKIGSL 75 (223)
T ss_pred CEEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc-----cccEEEE
Confidence 57899999999889999999999999999999999999999999999999999999999998875321 2468999
Q ss_pred ecccccCCCCCHHHhHHHHHHhcC-ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 027067 91 SLKDAVKEKFTVLDNVQWFEVLEG-KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVAL 169 (229)
Q Consensus 91 ~~~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~L 169 (229)
+|++.+++..|+.||+.++..... ....+.++++.+++.+..++++.+|||||+||++||||++.+|++|||||||++|
T Consensus 76 ~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~L 155 (223)
T TIGR03740 76 IESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGL 155 (223)
T ss_pred cCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCC
Confidence 999988888999999987543322 2345678899999998899999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 170 DYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 170 D~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|+.+++.+.+++.+++++|.|||++||+++++.+.+|
T Consensus 156 D~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d 192 (223)
T TIGR03740 156 DPIGIQELRELIRSFPEQGITVILSSHILSEVQQLAD 192 (223)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcC
Confidence 9999999999999987778999999999999988765
No 101
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-49 Score=359.38 Aligned_cols=198 Identities=27% Similarity=0.341 Sum_probs=173.5
Q ss_pred CcEEEEeEEEEeCCee------------------------eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCc
Q 027067 9 PRLLLKNVSCMRNAQQ------------------------ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSA 64 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~------------------------iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~ 64 (229)
.+|+++||++.||.++ +|+|+||+|++||+++|+||||||||||+|+|+|+++|++
T Consensus 3 ~~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~s 82 (400)
T PRK10070 3 IKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTR 82 (400)
T ss_pred cEEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCC
Confidence 3789999999888765 8999999999999999999999999999999999999999
Q ss_pred cEEEEcCEeCCCCchhh---hhhhcceEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCC
Q 027067 65 GEILWNGHDITQSGIFH---QYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKA 136 (229)
Q Consensus 65 G~I~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~ 136 (229)
|+|+++|+++....... ..+.+++|++|++.+++.+|+.||+.+.....+. ..++.++++.+++.+..++++
T Consensus 83 G~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~ 162 (400)
T PRK10070 83 GQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP 162 (400)
T ss_pred CEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc
Confidence 99999999986543211 1234799999999999999999999876543221 234567899999999999999
Q ss_pred CCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067 137 RMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 137 ~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~ 206 (229)
.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+++.++++ .|+|||++|||++++..++|
T Consensus 163 ~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~D 233 (400)
T PRK10070 163 DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGD 233 (400)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999865 58999999999999988764
No 102
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.6e-50 Score=343.87 Aligned_cols=197 Identities=29% Similarity=0.355 Sum_probs=173.1
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..... ..++..++
T Consensus 10 ~~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~-~~~~~~i~ 88 (265)
T PRK10575 10 TTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSS-KAFARKVA 88 (265)
T ss_pred ceEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCH-HHHhhheE
Confidence 57999999999998899999999999999999999999999999999999999999999999998754332 23456799
Q ss_pred EeecccccCCCCCHHHhHHHHHH-hc------C--ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCe
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEV-LE------G--KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPI 159 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~-~~------~--~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~i 159 (229)
|++|++.+++.+|+.||+.+... .. . ....+.++++.+++.+..++++.+|||||||||+|||||+.+|++
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l 168 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRC 168 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999888888999999976421 00 0 112356788999998888999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 160 WLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 160 lllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
|||||||++||+.+++.+.+++.+++++ |.|||++||+++++.+.+|
T Consensus 169 llLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d 216 (265)
T PRK10575 169 LLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCD 216 (265)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 9999999999999999999999998664 8999999999999988765
No 103
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=2e-49 Score=351.30 Aligned_cols=199 Identities=20% Similarity=0.272 Sum_probs=172.4
Q ss_pred CCcEEEEeEEEEeCC-------------eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeC
Q 027067 8 LPRLLLKNVSCMRNA-------------QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI 74 (229)
Q Consensus 8 ~~~l~l~~l~~~~~~-------------~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~ 74 (229)
.++|+++||+++|+. .++++||||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|+++
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence 468999999999952 5799999999999999999999999999999999999999999999999998
Q ss_pred CCCchh--hhhhhcceEeeccc--ccCCCCCHHHhHHHHHHhc--C-c----cccHHHHHHHhCCC-hhhcCCCCCCChh
Q 027067 75 TQSGIF--HQYKLQLNWLSLKD--AVKEKFTVLDNVQWFEVLE--G-K----QGNSLPALELMGLG-RLAKEKARMLSMG 142 (229)
Q Consensus 75 ~~~~~~--~~~~~~~~~~~~~~--~~~~~~tv~e~l~~~~~~~--~-~----~~~~~~~l~~~~l~-~~~~~~~~~LSgG 142 (229)
...... ...+..++|++|++ .+++.+|+.+|+.+..... . . ...+.++++.+++. +..++++++||||
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG 165 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGG 165 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHH
Confidence 754321 22456799999997 5888899999997643221 1 1 22356789999994 5789999999999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 143 QRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 143 qkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
|+|||+|||||+.+|++||+||||++||+.++..+.+++++++++ |.|+|+||||++.+..++|
T Consensus 166 ~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~d 230 (331)
T PRK15079 166 QCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISD 230 (331)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence 999999999999999999999999999999999999999998764 8999999999999988764
No 104
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-49 Score=343.58 Aligned_cols=197 Identities=24% Similarity=0.309 Sum_probs=169.4
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCch-hhhhhhcce
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI-FHQYKLQLN 88 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~-~~~~~~~~~ 88 (229)
||+++||+++|+++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..... ....+..++
T Consensus 1 ml~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~ 80 (271)
T PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVA 80 (271)
T ss_pred CeEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheE
Confidence 5899999999998889999999999999999999999999999999999999999999999998742111 123456799
Q ss_pred Eeeccccc-CCCCCHHHhHHHHHHhcC-c----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067 89 WLSLKDAV-KEKFTVLDNVQWFEVLEG-K----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLL 162 (229)
Q Consensus 89 ~~~~~~~~-~~~~tv~e~l~~~~~~~~-~----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illl 162 (229)
|++|++.. +...++.+|+.+.....+ . ...+.++++.+++.++.++++.+||||||||++|||||+.+|++|||
T Consensus 81 ~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllL 160 (271)
T PRK13638 81 TVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLL 160 (271)
T ss_pred EEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99998653 344579999876533221 1 12345688999998889999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 163 DEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 163 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
||||++||+.+++.+.+++.+++++|.|||++||+++++.+.+|
T Consensus 161 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d 204 (271)
T PRK13638 161 DEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISD 204 (271)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999999987778999999999999988765
No 105
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=2.1e-49 Score=333.44 Aligned_cols=196 Identities=28% Similarity=0.395 Sum_probs=170.9
Q ss_pred CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
.++|+++||++.|+++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... ..++..+
T Consensus 5 ~~~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~-~~~~~~i 83 (225)
T PRK10247 5 SPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKP-EIYRQQV 83 (225)
T ss_pred CceEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCH-HHHHhcc
Confidence 357999999999998899999999999999999999999999999999999999999999999998765433 2345679
Q ss_pred eEeecccccCCCCCHHHhHHHHHHhcC---ccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEe
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFEVLEG---KQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLD 163 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~illlD 163 (229)
+|++|++.+++. |+.||+.+...... ....+.++++.+++. ...++++.+||+||+|||+|||||+.+|+++|||
T Consensus 84 ~~~~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 162 (225)
T PRK10247 84 SYCAQTPTLFGD-TVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLD 162 (225)
T ss_pred EEEecccccccc-cHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999888764 99999986433221 122356789999996 5789999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067 164 EPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 164 EPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~ 206 (229)
|||++||+.+++.+.+++.++.+ .|.|||++||+++++. .+|
T Consensus 163 EPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d 205 (225)
T PRK10247 163 EITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HAD 205 (225)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCC
Confidence 99999999999999999999865 4899999999999986 455
No 106
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-49 Score=343.44 Aligned_cols=196 Identities=24% Similarity=0.282 Sum_probs=169.7
Q ss_pred cEEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 10 RLLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 10 ~l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
+++++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|.++.........+..++
T Consensus 1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 589999999995 5779999999999999999999999999999999999999999999999998864322223456799
Q ss_pred Eeecccc-cCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067 89 WLSLKDA-VKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLL 162 (229)
Q Consensus 89 ~~~~~~~-~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illl 162 (229)
|++|++. .+...|+.||+.+...... ....+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllL 160 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIF 160 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999875 3556799999987543221 123456788999999899999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 163 DEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 163 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
||||++||+.++..+.+++++++++|.|||++||+++++.. +|
T Consensus 161 DEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~-~d 203 (274)
T PRK13644 161 DEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHD-AD 203 (274)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhh-CC
Confidence 99999999999999999999988779999999999999853 54
No 107
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-49 Score=345.85 Aligned_cols=196 Identities=23% Similarity=0.347 Sum_probs=168.7
Q ss_pred cEEEEeEEEEeCC-----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCC---chhh
Q 027067 10 RLLLKNVSCMRNA-----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQS---GIFH 81 (229)
Q Consensus 10 ~l~l~~l~~~~~~-----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~ 81 (229)
||+++||+++|+. +.+|+||||+|.+||+++|+||||||||||+|+|+|+++|++|+|+++|.++... ....
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 5899999999963 2599999999999999999999999999999999999999999999999998531 1123
Q ss_pred hhhhcceEeeccc--ccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHH
Q 027067 82 QYKLQLNWLSLKD--AVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARLL 153 (229)
Q Consensus 82 ~~~~~~~~~~~~~--~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral 153 (229)
..+..++|++|++ .++. .|+.||+.+.....+ ...++.++++.+++. ++.++++.+|||||||||+|||||
T Consensus 81 ~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL 159 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGIL 159 (288)
T ss_pred HHHhhEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHH
Confidence 3566899999986 4554 599999987643221 123456788999996 578999999999999999999999
Q ss_pred hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
+.+|++|||||||++||+.++..+.+++.+++++|.|||++|||++++...+|
T Consensus 160 ~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~d 212 (288)
T PRK13643 160 AMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYAD 212 (288)
T ss_pred HhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCC
Confidence 99999999999999999999999999999987779999999999999887654
No 108
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2e-50 Score=335.55 Aligned_cols=203 Identities=26% Similarity=0.407 Sum_probs=185.9
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
+++++++|+|+||++.+++|+||++++|+++|++|+|||||||.+|+|.|+++|++|+|.|+|.+++.. ...+||
T Consensus 1 ~~L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~-----~~~rIG 75 (300)
T COG4152 1 MALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQE-----IKNRIG 75 (300)
T ss_pred CceEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhh-----hhhhcc
Confidence 368999999999999999999999999999999999999999999999999999999999999998652 345799
Q ss_pred EeecccccCCCCCHHHhHHHHHHhcCcc-----ccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEe
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEVLEGKQ-----GNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLD 163 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlD 163 (229)
|+|.+..+++.+||.|.+.|++.+.+.. .+...||+++++.....+++.+||.|++|++.+..+++++|+++|||
T Consensus 76 yLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILD 155 (300)
T COG4152 76 YLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILD 155 (300)
T ss_pred cChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEec
Confidence 9999999999999999999998876543 34567999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhccCCCCCCCCc
Q 027067 164 EPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNLRLPPRFPRR 216 (229)
Q Consensus 164 EPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~~~~~~~~~~ 216 (229)
||||||||.+.+.+.+.+.+++++|.|||++||.++.+++.||.=+.-.-+++
T Consensus 156 EPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~ 208 (300)
T COG4152 156 EPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQT 208 (300)
T ss_pred CCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCce
Confidence 99999999999999999999999999999999999999999985444334433
No 109
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-49 Score=343.36 Aligned_cols=196 Identities=26% Similarity=0.335 Sum_probs=170.8
Q ss_pred CcEEEEeEEEEeCC---eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhh
Q 027067 9 PRLLLKNVSCMRNA---QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL 85 (229)
Q Consensus 9 ~~l~l~~l~~~~~~---~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 85 (229)
++|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..... ...+.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~-~~~~~ 81 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENV-WDIRH 81 (279)
T ss_pred ceEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcH-HHHHh
Confidence 37999999999963 469999999999999999999999999999999999999999999999999865332 23456
Q ss_pred cceEeeccc-ccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCe
Q 027067 86 QLNWLSLKD-AVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPI 159 (229)
Q Consensus 86 ~~~~~~~~~-~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~i 159 (229)
.++|++|++ ..++..||.||+.+.....+ ....+.++++.+++.+..++.+.+|||||||||+|||||+.+|++
T Consensus 82 ~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~l 161 (279)
T PRK13650 82 KIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKI 161 (279)
T ss_pred hceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 799999987 36677899999987543221 123456789999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 160 WLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 160 lllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
|||||||++||+.+++.+.+++.+++++ |+|||++||+++++. .+|
T Consensus 162 LlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~-~~d 208 (279)
T PRK13650 162 IILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSD 208 (279)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCC
Confidence 9999999999999999999999998765 899999999999885 454
No 110
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1.9e-49 Score=340.72 Aligned_cols=198 Identities=25% Similarity=0.364 Sum_probs=172.5
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCC---ccEEEEcCEeCCCCc----hhh
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPS---AGEILWNGHDITQSG----IFH 81 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~----~~~ 81 (229)
++|+++||+++|+++++|+++||+|.+||+++|+||||||||||+++|+|+++|+ +|+|+++|+++.... ...
T Consensus 3 ~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (262)
T PRK09984 3 TIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIR 82 (262)
T ss_pred cEEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHH
Confidence 4899999999999999999999999999999999999999999999999999986 499999999875421 112
Q ss_pred hhhhcceEeecccccCCCCCHHHhHHHHHHh------------c-CccccHHHHHHHhCCChhhcCCCCCCChhHHHHHH
Q 027067 82 QYKLQLNWLSLKDAVKEKFTVLDNVQWFEVL------------E-GKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQ 148 (229)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~------------~-~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~ 148 (229)
..+..++|++|++.+++.+|+.||+.+.... . .....+.++++.+++.+..++.+.+||+||||||+
T Consensus 83 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ 162 (262)
T PRK09984 83 KSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVA 162 (262)
T ss_pred HHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHH
Confidence 3356789999999999989999999764210 0 01234567899999988889999999999999999
Q ss_pred HHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067 149 LARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 149 lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~ 206 (229)
|||||+.+|++|||||||++||+.+++.+.++++++++ .|.|||++||+++++..++|
T Consensus 163 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d 221 (262)
T PRK09984 163 IARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCE 221 (262)
T ss_pred HHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999999999999999999999875 48999999999999888775
No 111
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-49 Score=343.85 Aligned_cols=195 Identities=26% Similarity=0.325 Sum_probs=170.2
Q ss_pred EEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhh---hhhhcce
Q 027067 12 LLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFH---QYKLQLN 88 (229)
Q Consensus 12 ~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~---~~~~~~~ 88 (229)
.++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++....... ..+.+++
T Consensus 26 ~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~ 105 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKIS 105 (269)
T ss_pred hhhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEE
Confidence 5678999999999999999999999999999999999999999999999999999999999876432111 1134699
Q ss_pred EeecccccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEe
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLD 163 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlD 163 (229)
|++|++.+++.+|+.||+.+...... ...++.++++.+++.+..++++.+|||||||||+|||||+.+|++||||
T Consensus 106 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLD 185 (269)
T cd03294 106 MVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMD 185 (269)
T ss_pred EEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999989999999987543221 1234567899999998899999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 164 EPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 164 EPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
|||+|||+.+++.+.+++.+++++ |.|||++||+++++...+|
T Consensus 186 EPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d 229 (269)
T cd03294 186 EAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGD 229 (269)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcC
Confidence 999999999999999999998654 8999999999999888765
No 112
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=2.7e-49 Score=337.79 Aligned_cols=196 Identities=27% Similarity=0.326 Sum_probs=171.4
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCc------------
Q 027067 11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG------------ 78 (229)
Q Consensus 11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~------------ 78 (229)
++++||+++|+++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++....
T Consensus 1 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~ 80 (252)
T TIGR03005 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEK 80 (252)
T ss_pred CEEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchh
Confidence 57999999999889999999999999999999999999999999999999999999999999875321
Q ss_pred hhhhhhhcceEeecccccCCCCCHHHhHHHHHHh-cC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHH
Q 027067 79 IFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVL-EG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARL 152 (229)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~-~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAra 152 (229)
.....+..++|++|++.+++..|+.||+.+.... .. ....+.++++.+++.+..++.+.+|||||+||++||||
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lara 160 (252)
T TIGR03005 81 HLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARA 160 (252)
T ss_pred HHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHH
Confidence 0123456799999999999999999999864321 11 11235678999999988999999999999999999999
Q ss_pred HhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 153 LAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 153 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
|+.+|++|||||||++||+.+++.+.++++++.++ |.|+|++||+++++..++|
T Consensus 161 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d 215 (252)
T TIGR03005 161 LAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFAD 215 (252)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcC
Confidence 99999999999999999999999999999998764 8999999999999988765
No 113
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-49 Score=343.95 Aligned_cols=196 Identities=24% Similarity=0.339 Sum_probs=168.4
Q ss_pred cEEEEeEEEEeCC-----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCC---chhh
Q 027067 10 RLLLKNVSCMRNA-----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQS---GIFH 81 (229)
Q Consensus 10 ~l~l~~l~~~~~~-----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~ 81 (229)
.++++||+++|++ +++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... ....
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 3899999999974 5699999999999999999999999999999999999999999999999988531 1122
Q ss_pred hhhhcceEeeccc--ccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHH
Q 027067 82 QYKLQLNWLSLKD--AVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARLL 153 (229)
Q Consensus 82 ~~~~~~~~~~~~~--~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral 153 (229)
..+..++|++|++ .++ ..||.||+.+...... ....+.++++.++|. ...++++.+|||||||||+|||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL 160 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVL 160 (290)
T ss_pred HHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 3456799999986 454 4699999987643221 113456789999996 678999999999999999999999
Q ss_pred hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
+.+|++|||||||++||+.++..+.+++++++++ |.|||++|||++++..++|
T Consensus 161 ~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~d 214 (290)
T PRK13634 161 AMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYAD 214 (290)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 9999999999999999999999999999998664 8999999999999988764
No 114
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=4e-49 Score=339.40 Aligned_cols=197 Identities=25% Similarity=0.356 Sum_probs=169.6
Q ss_pred cEEEEeEEEEeC---------CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchh
Q 027067 10 RLLLKNVSCMRN---------AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF 80 (229)
Q Consensus 10 ~l~l~~l~~~~~---------~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~ 80 (229)
+|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++......
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 689999999995 36799999999999999999999999999999999999999999999999988654321
Q ss_pred h--hhhhcceEeeccc--ccCCCCCHHHhHHHHHHh-cC-----ccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHH
Q 027067 81 H--QYKLQLNWLSLKD--AVKEKFTVLDNVQWFEVL-EG-----KQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQL 149 (229)
Q Consensus 81 ~--~~~~~~~~~~~~~--~~~~~~tv~e~l~~~~~~-~~-----~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~l 149 (229)
. .++..++|++|++ .+++.+|+.||+.+.... .. ...++.++++.+++. ...++++.+|||||||||+|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~l 161 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINI 161 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHH
Confidence 1 2355799999986 466778999998754321 11 123456789999996 67899999999999999999
Q ss_pred HHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 150 ARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 150 Aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
||||+.+|++|||||||++||+.+++.+.+++.+++++ |.|||++||+++.+..++|
T Consensus 162 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d 219 (265)
T TIGR02769 162 ARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQ 219 (265)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhc
Confidence 99999999999999999999999999999999998764 8999999999999988765
No 115
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-49 Score=335.97 Aligned_cols=197 Identities=27% Similarity=0.355 Sum_probs=168.2
Q ss_pred CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC-----CCccEEEEcCEeCCCCch-hh
Q 027067 8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK-----PSAGEILWNGHDITQSGI-FH 81 (229)
Q Consensus 8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~-----p~~G~I~~~g~~~~~~~~-~~ 81 (229)
+|+|+++||+++|+++.+|+++||+|++||+++|+||||||||||+|+|+|+.+ |++|+|+++|+++..... ..
T Consensus 4 ~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 4 PPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred CcEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 468999999999998889999999999999999999999999999999999974 589999999998753211 12
Q ss_pred hhhhcceEeecccccCCCCCHHHhHHHHHHhcCc------cccHHHHHHHhCCCh----hhcCCCCCCChhHHHHHHHHH
Q 027067 82 QYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK------QGNSLPALELMGLGR----LAKEKARMLSMGQRKRLQLAR 151 (229)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~------~~~~~~~l~~~~l~~----~~~~~~~~LSgGqkqRv~lAr 151 (229)
..+..++|++|++.+++ .|+.||+.+....... ..++.++++.+++.+ ..++++.+|||||||||+|||
T Consensus 84 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lar 162 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIAR 162 (253)
T ss_pred HHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHH
Confidence 34567999999988887 4999999875432211 123556788888843 468889999999999999999
Q ss_pred HHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 152 LLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 152 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
||+.+|++|||||||++||+.+++.+.++++++++ +.|||++||+++++.+.+|
T Consensus 163 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~~~~~~~d 216 (253)
T PRK14242 163 ALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQQAARVSD 216 (253)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHHHHHHhCC
Confidence 99999999999999999999999999999999854 7899999999999988775
No 116
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-49 Score=346.78 Aligned_cols=197 Identities=25% Similarity=0.370 Sum_probs=168.2
Q ss_pred cEEEEeEEEEeCCe-----eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCC-------
Q 027067 10 RLLLKNVSCMRNAQ-----QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQS------- 77 (229)
Q Consensus 10 ~l~l~~l~~~~~~~-----~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~------- 77 (229)
+|+++||+++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|++....
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 48999999999753 599999999999999999999999999999999999999999999998765211
Q ss_pred ----------------chhhhhhhcceEeeccc-ccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCC-hhhcC
Q 027067 78 ----------------GIFHQYKLQLNWLSLKD-AVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLG-RLAKE 134 (229)
Q Consensus 78 ----------------~~~~~~~~~~~~~~~~~-~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~-~~~~~ 134 (229)
......+..++|++|++ ..+...||+||+.+...... ...++.++++.+||. ++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 161 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR 161 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence 01123466899999985 23335699999987643221 123467889999996 78999
Q ss_pred CCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 135 KARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 135 ~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+++.+++++|.|||++|||++++.+.+|
T Consensus 162 ~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ad 233 (305)
T PRK13651 162 SPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTK 233 (305)
T ss_pred ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999988779999999999999888764
No 117
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-49 Score=335.69 Aligned_cols=195 Identities=27% Similarity=0.363 Sum_probs=169.9
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC-----CccEEEEcCEeCCCCchhhhhh
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP-----SAGEILWNGHDITQSGIFHQYK 84 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-----~~G~I~~~g~~~~~~~~~~~~~ 84 (229)
+++++||+++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++..... ...+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~-~~~~ 81 (250)
T PRK14247 3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV-IELR 81 (250)
T ss_pred eEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCH-HHHh
Confidence 69999999999988999999999999999999999999999999999999974 79999999998865332 2345
Q ss_pred hcceEeecccccCCCCCHHHhHHHHHHhcC---c----cccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHHHHH
Q 027067 85 LQLNWLSLKDAVKEKFTVLDNVQWFEVLEG---K----QGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLARLL 153 (229)
Q Consensus 85 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~----~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lAral 153 (229)
..++|++|++.+++..|+.||+.+...... . ...+.++++.+++. +..++++.+|||||||||+|||||
T Consensus 82 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 161 (250)
T PRK14247 82 RRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARAL 161 (250)
T ss_pred ccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHH
Confidence 679999999988888999999987543211 1 12345788889985 356899999999999999999999
Q ss_pred hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
+.+|++|||||||++||+.+++.+.+++.++++ +.|+|++||+++++.+.+|
T Consensus 162 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d 213 (250)
T PRK14247 162 AFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQQAARISD 213 (250)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcC
Confidence 999999999999999999999999999999854 7999999999999888765
No 118
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-49 Score=341.03 Aligned_cols=198 Identities=25% Similarity=0.309 Sum_probs=173.7
Q ss_pred CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
..+|+++||+++|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|+++..... ...+..+
T Consensus 5 ~~~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~-~~~~~~i 83 (265)
T PRK10253 5 VARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYAS-KEVARRI 83 (265)
T ss_pred ccEEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCH-HHHhhhe
Confidence 357999999999999899999999999999999999999999999999999999999999999998765332 2234579
Q ss_pred eEeecccccCCCCCHHHhHHHHHH-h----c--C--ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCC
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFEV-L----E--G--KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRP 158 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~~-~----~--~--~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 158 (229)
+|++|++.+++..|+.||+.+... . . . ....+.++++.+++.+..++++.+||||||||++||||++.+|+
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~ 163 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETA 163 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCC
Confidence 999999998888999999976321 0 0 0 11235678899999888999999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 159 IWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 159 illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
+|||||||+|||+.+++.+.+++.++.++ |.|||++||+++++.+++|
T Consensus 164 llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d 212 (265)
T PRK10253 164 IMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYAS 212 (265)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999999999998764 8999999999999988876
No 119
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-49 Score=336.05 Aligned_cols=198 Identities=25% Similarity=0.328 Sum_probs=168.9
Q ss_pred CCCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC-----CccEEEEcCEeCCCCc-hh
Q 027067 7 PLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP-----SAGEILWNGHDITQSG-IF 80 (229)
Q Consensus 7 ~~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-----~~G~I~~~g~~~~~~~-~~ 80 (229)
+.++++++|++++|+++.+|+|+||+|++||+++|+|+||||||||+|+|+|+++| ++|+|+++|+++.... ..
T Consensus 4 ~~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 4 NEAIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred CCceEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 34589999999999988899999999999999999999999999999999999997 4899999999875321 11
Q ss_pred hhhhhcceEeecccccCCCCCHHHhHHHHHHhcCc------cccHHHHHHHhCC----ChhhcCCCCCCChhHHHHHHHH
Q 027067 81 HQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK------QGNSLPALELMGL----GRLAKEKARMLSMGQRKRLQLA 150 (229)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~------~~~~~~~l~~~~l----~~~~~~~~~~LSgGqkqRv~lA 150 (229)
...+..++|++|++.++. .|++||+.+....... ...+.++++.+++ .+..++++.+|||||||||+||
T Consensus 84 ~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~la 162 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIA 162 (254)
T ss_pred HHHhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHH
Confidence 234567999999988874 8999999875432211 1234567788887 3457889999999999999999
Q ss_pred HHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 151 RLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 151 ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|||+.+|++|||||||++||+.+++.+.+++.++++ +.|||++||+++++.+++|
T Consensus 163 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~~~~~~~d 217 (254)
T PRK14273 163 RTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQQAGRISD 217 (254)
T ss_pred HHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCC
Confidence 999999999999999999999999999999999864 7899999999999988765
No 120
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.3e-49 Score=325.78 Aligned_cols=202 Identities=27% Similarity=0.360 Sum_probs=180.7
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
++|+++||+..||..++|++|||++++||+++|+|+||||||||||+|+|+.+|.+|+|.|+|+|++..+.....+..++
T Consensus 2 ~mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~ 81 (237)
T COG0410 2 PMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIA 81 (237)
T ss_pred CceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999888788889999
Q ss_pred EeecccccCCCCCHHHhHHHHHHhcCc---cc-cHHHHHHHh-CCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEe
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEVLEGK---QG-NSLPALELM-GLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLD 163 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~---~~-~~~~~l~~~-~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlD 163 (229)
|+||...+|+.+||+||+..+...... .. ..+++.+.| .|.+.++++..+|||||||.++|||||+.+|++|+||
T Consensus 82 ~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLD 161 (237)
T COG0410 82 YVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLD 161 (237)
T ss_pred eCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEec
Confidence 999999999999999999876443221 11 145566665 3567789999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhccCCC
Q 027067 164 EPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMNLRLP 210 (229)
Q Consensus 164 EPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~~~~~ 210 (229)
|||.||-|.-.+.+.+.+++++++ |.||++|.++...+-++.|....
T Consensus 162 EPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yv 209 (237)
T COG0410 162 EPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYV 209 (237)
T ss_pred CCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEE
Confidence 999999999999999999999866 77999999999988887765443
No 121
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=3.3e-49 Score=368.09 Aligned_cols=199 Identities=21% Similarity=0.287 Sum_probs=176.2
Q ss_pred CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
.++|+++|++++|+++++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++.........+..+
T Consensus 9 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 9 PPLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred CceEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 45899999999999989999999999999999999999999999999999999999999999999886543322223468
Q ss_pred eEeecccccCCCCCHHHhHHHHHHhcC-ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCC
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFEVLEG-KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPS 166 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt 166 (229)
+|++|++.+++.+|+.||+.+...... ...++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt 168 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPT 168 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 999999999999999999987432111 1234667899999998889999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 167 VALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 167 ~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
++||+.+++.+.+++++++++|+|||++|||++++.+.+|
T Consensus 169 ~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d 208 (510)
T PRK15439 169 ASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLAD 208 (510)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence 9999999999999999998789999999999999988764
No 122
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.8e-49 Score=369.12 Aligned_cols=198 Identities=22% Similarity=0.329 Sum_probs=174.9
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
++|+++|++++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.........+..++
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 82 (501)
T PRK10762 3 ALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIG 82 (501)
T ss_pred ceEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 48999999999998899999999999999999999999999999999999999999999999998864332222345699
Q ss_pred EeecccccCCCCCHHHhHHHHHHhc---C------ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCe
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEVLE---G------KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPI 159 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~~~---~------~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~i 159 (229)
|++|++.+++.+|+.||+.++.... . ...++.++++.+++.+..++++.+|||||||||+|||||+.+|++
T Consensus 83 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 162 (501)
T PRK10762 83 IIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKV 162 (501)
T ss_pred EEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999998743211 0 012456789999999888999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 160 WLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 160 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|||||||++||+.+++.+.+++.+++++|.|||++|||++++..++|
T Consensus 163 llLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d 209 (501)
T PRK10762 163 IIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICD 209 (501)
T ss_pred EEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999999999998778999999999999998775
No 123
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=5.4e-50 Score=320.23 Aligned_cols=193 Identities=28% Similarity=0.380 Sum_probs=171.5
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW 89 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 89 (229)
|+.+++|.++|+..+. ..+++|+.||+++|+|||||||||||++|+|+..|.+|+|+++|++.+...+ +.+-+++
T Consensus 1 ~l~L~~V~~~y~~~~~--~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P---~~RPVSm 75 (231)
T COG3840 1 MLALDDVRFSYGHLPM--RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPP---AERPVSM 75 (231)
T ss_pred CccccceEEeeCcceE--EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCc---ccCChhh
Confidence 4788999999987765 7889999999999999999999999999999999999999999999887654 3456789
Q ss_pred eecccccCCCCCHHHhHHHHHHh----cC-ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeC
Q 027067 90 LSLKDAVKEKFTVLDNVQWFEVL----EG-KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDE 164 (229)
Q Consensus 90 ~~~~~~~~~~~tv~e~l~~~~~~----~~-~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDE 164 (229)
++|+.++|.++||.+|+.++... .. ...++..++.++|+..+.++.|.+|||||||||+|||+|+++-+||+|||
T Consensus 76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDE 155 (231)
T COG3840 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDE 155 (231)
T ss_pred hhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecC
Confidence 99999999999999999876321 11 22456778999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEeCChhhHHhhhcc
Q 027067 165 PSVALDYDGVRLLEYIIAEHR-KKGGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 165 Pt~~LD~~~~~~l~~~l~~~~-~~g~tii~vtH~~~~~~~~~~~ 207 (229)
|||+|||.-+..+..++.+++ +++.|++||||.++++....+.
T Consensus 156 PFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~ 199 (231)
T COG3840 156 PFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADR 199 (231)
T ss_pred chhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhc
Confidence 999999999999999999975 4588999999999999987653
No 124
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-49 Score=341.04 Aligned_cols=196 Identities=25% Similarity=0.318 Sum_probs=171.4
Q ss_pred CcEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067 9 PRLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ 86 (229)
Q Consensus 9 ~~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 86 (229)
++++++||+++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..... ...+..
T Consensus 4 ~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~-~~~~~~ 82 (279)
T PRK13635 4 EIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETV-WDVRRQ 82 (279)
T ss_pred ceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcH-HHHhhh
Confidence 47999999999974 579999999999999999999999999999999999999999999999999865432 234567
Q ss_pred ceEeecccc-cCCCCCHHHhHHHHHHhcC-c----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeE
Q 027067 87 LNWLSLKDA-VKEKFTVLDNVQWFEVLEG-K----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIW 160 (229)
Q Consensus 87 ~~~~~~~~~-~~~~~tv~e~l~~~~~~~~-~----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~il 160 (229)
++|++|++. ++...|+.||+.+...... . ..++.++++.+||.+..++++.+|||||||||+|||||+.+|++|
T Consensus 83 i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 162 (279)
T PRK13635 83 VGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDII 162 (279)
T ss_pred eEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999873 6667899999987543221 1 134567889999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 161 LLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 161 llDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
||||||+|||+.+++.+.+++.+++++ |.|||++||+++.+.. +|
T Consensus 163 lLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~-~d 208 (279)
T PRK13635 163 ILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ-AD 208 (279)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CC
Confidence 999999999999999999999998765 8999999999999874 54
No 125
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=4.6e-49 Score=337.21 Aligned_cols=195 Identities=29% Similarity=0.310 Sum_probs=171.9
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067 11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL 90 (229)
Q Consensus 11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~ 90 (229)
|+++|+++.|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..... ...+..++|+
T Consensus 2 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~-~~~~~~i~~~ 80 (256)
T TIGR03873 2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSR-RARARRVALV 80 (256)
T ss_pred ceEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCH-HHHhhheEEe
Confidence 689999999999999999999999999999999999999999999999999999999999998865432 2334568999
Q ss_pred ecccccCCCCCHHHhHHHHHH-h---cC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEE
Q 027067 91 SLKDAVKEKFTVLDNVQWFEV-L---EG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWL 161 (229)
Q Consensus 91 ~~~~~~~~~~tv~e~l~~~~~-~---~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ill 161 (229)
+|++.+++..|+.||+.++.. . .. ....+.++++.+++.+..++++.+||||||||++||||++.+|+++|
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll 160 (256)
T TIGR03873 81 EQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLL 160 (256)
T ss_pred cccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999877888899999976421 1 10 11235678899999888999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 162 LDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 162 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|||||++||+.+++.+.+++.+++++|.|||++||+++++..++|
T Consensus 161 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d 205 (256)
T TIGR03873 161 LDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCD 205 (256)
T ss_pred EcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 999999999999999999999988778999999999999988765
No 126
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.9e-49 Score=329.08 Aligned_cols=193 Identities=26% Similarity=0.310 Sum_probs=167.2
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCc---hhhhhhhcc
Q 027067 11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG---IFHQYKLQL 87 (229)
Q Consensus 11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~---~~~~~~~~~ 87 (229)
+++ ||+|+|+++.+ |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.... .....+..+
T Consensus 2 ~~~-~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 77 (214)
T cd03297 2 LCV-DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKI 77 (214)
T ss_pred cee-eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcE
Confidence 455 89999999876 99999999 999999999999999999999999999999999999875311 112235679
Q ss_pred eEeecccccCCCCCHHHhHHHHHHhcC---ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeC
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFEVLEG---KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDE 164 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDE 164 (229)
+|++|++.+++.+|+.+|+.+...... ...++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 157 (214)
T cd03297 78 GLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDE 157 (214)
T ss_pred EEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 999999999989999999986542211 12345678999999888899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhcc
Q 027067 165 PSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 165 Pt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~~ 207 (229)
||++||+.+++.+.+++.+++++ |.|||++||+++++...+|.
T Consensus 158 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~ 201 (214)
T cd03297 158 PFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADR 201 (214)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCE
Confidence 99999999999999999998765 89999999999999887763
No 127
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.6e-49 Score=340.50 Aligned_cols=198 Identities=27% Similarity=0.374 Sum_probs=170.9
Q ss_pred CcEEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCc-hhhhhhhc
Q 027067 9 PRLLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG-IFHQYKLQ 86 (229)
Q Consensus 9 ~~l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~-~~~~~~~~ 86 (229)
++|+++||+++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.... .....+..
T Consensus 4 ~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 4 YILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred ceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 4899999999996 578999999999999999999999999999999999999999999999999984211 11234567
Q ss_pred ceEeecccc-cCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeE
Q 027067 87 LNWLSLKDA-VKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIW 160 (229)
Q Consensus 87 ~~~~~~~~~-~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~il 160 (229)
++|++|++. .+...|+.||+.+.....+. ...+.++++.+++.+..++++.+||||||||++|||||+.+|++|
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lL 163 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVL 163 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999863 23457999999875432211 134567889999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 161 LLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 161 llDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
||||||+|||+.+++.+.+++.+++++ |.|||++||+++++...+|
T Consensus 164 ilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~d 210 (283)
T PRK13636 164 VLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCD 210 (283)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCC
Confidence 999999999999999999999998765 8999999999999988765
No 128
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.5e-49 Score=337.12 Aligned_cols=201 Identities=25% Similarity=0.305 Sum_probs=171.1
Q ss_pred CCCCCCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC-----CCccEEEEcCEeCCCCc
Q 027067 4 RKPPLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK-----PSAGEILWNGHDITQSG 78 (229)
Q Consensus 4 ~~~~~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~-----p~~G~I~~~g~~~~~~~ 78 (229)
.+.+..+++++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++....
T Consensus 7 ~~~~~~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~ 86 (260)
T PRK10744 7 VATAPSKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPK 86 (260)
T ss_pred hcCCCceEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccc
Confidence 3445678999999999998899999999999999999999999999999999999986 58999999999875321
Q ss_pred -hhhhhhhcceEeecccccCCCCCHHHhHHHHHHhc-C-c----cccHHHHHHHhCCC----hhhcCCCCCCChhHHHHH
Q 027067 79 -IFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLE-G-K----QGNSLPALELMGLG----RLAKEKARMLSMGQRKRL 147 (229)
Q Consensus 79 -~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~-~-~----~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv 147 (229)
.....+..++|++|++.+++ .|++||+.+..... . . ..++.++++.+++. +..++++.+||||||||+
T Consensus 87 ~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv 165 (260)
T PRK10744 87 QDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRL 165 (260)
T ss_pred cchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHH
Confidence 11234567999999988877 79999998654321 1 1 12356788888874 457889999999999999
Q ss_pred HHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 148 QLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 148 ~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
+|||||+.+|++|||||||++||+.+++.+.+++.++++ +.|||++||+++++..++|
T Consensus 166 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~~~~~~d 223 (260)
T PRK10744 166 CIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNMQQAARCSD 223 (260)
T ss_pred HHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCC
Confidence 999999999999999999999999999999999999864 7899999999999988765
No 129
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-48 Score=338.99 Aligned_cols=196 Identities=24% Similarity=0.387 Sum_probs=170.2
Q ss_pred cEEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 10 RLLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 10 ~l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
+++++||+++|+ ++.+|+|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|+++|+++..... ...+..++
T Consensus 3 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-~~~~~~i~ 81 (277)
T PRK13652 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENI-REVRKFVG 81 (277)
T ss_pred eEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCH-HHHHhheE
Confidence 699999999995 5679999999999999999999999999999999999999999999999998865332 23456789
Q ss_pred Eeecccc-cCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067 89 WLSLKDA-VKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLL 162 (229)
Q Consensus 89 ~~~~~~~-~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illl 162 (229)
|++|++. .+...|+.||+.+....... ...+.++++.+++.+..++++.+||||||||++|||||+.+|++|||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llil 161 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVL 161 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999863 33457999999865432111 12356789999999889999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 163 DEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 163 DEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
||||++||+.+++.+.+++++++++ |.|||++||+++++.+++|
T Consensus 162 DEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~d 206 (277)
T PRK13652 162 DEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMAD 206 (277)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCC
Confidence 9999999999999999999998765 8999999999999988764
No 130
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-49 Score=351.55 Aligned_cols=193 Identities=20% Similarity=0.304 Sum_probs=169.5
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCc---hhhhhhhc
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG---IFHQYKLQ 86 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~---~~~~~~~~ 86 (229)
||++ ||+++|+++.+ |+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.... .....++.
T Consensus 1 ~l~~-~l~k~~~~~~~--~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 77 (352)
T PRK11144 1 MLEL-NFKQQLGDLCL--TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRR 77 (352)
T ss_pred CeEE-EEEEEeCCEEE--EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCC
Confidence 5788 99999987653 899999999999999999999999999999999999999999999875321 01223567
Q ss_pred ceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCC
Q 027067 87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPS 166 (229)
Q Consensus 87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt 166 (229)
++|++|++.+++.+|+.||+.+.... ....++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 78 i~~v~q~~~l~~~~tv~enl~~~~~~-~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPt 156 (352)
T PRK11144 78 IGYVFQDARLFPHYKVRGNLRYGMAK-SMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPL 156 (352)
T ss_pred EEEEcCCcccCCCCcHHHHHHhhhhh-hhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 99999999999999999999875321 12345678899999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 167 VALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 167 ~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
++||+.+++.+.+.++++.++ |.|+|+||||++++..++|
T Consensus 157 s~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d 197 (352)
T PRK11144 157 ASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLAD 197 (352)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCC
Confidence 999999999999999998765 8999999999999988765
No 131
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-49 Score=342.47 Aligned_cols=196 Identities=20% Similarity=0.286 Sum_probs=168.6
Q ss_pred cEEEEeEEEEeCC-----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCc---hhh
Q 027067 10 RLLLKNVSCMRNA-----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG---IFH 81 (229)
Q Consensus 10 ~l~l~~l~~~~~~-----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~---~~~ 81 (229)
.++++||+++|++ +++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.... ...
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 4899999999964 36999999999999999999999999999999999999999999999999985421 112
Q ss_pred hhhhcceEeeccc--ccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHH
Q 027067 82 QYKLQLNWLSLKD--AVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARLL 153 (229)
Q Consensus 82 ~~~~~~~~~~~~~--~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral 153 (229)
..+..++|++|++ .+++ .|+.||+.+...... ....+.++++.+|+. +..++++.+|||||||||+|||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL 160 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSIL 160 (286)
T ss_pred HHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 3566899999986 3554 499999987543221 123456789999997 678999999999999999999999
Q ss_pred hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067 154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~ 206 (229)
+.+|++|||||||++||+.++..+.++++++++ .|.|||++||+++++.+++|
T Consensus 161 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~d 214 (286)
T PRK13646 161 AMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYAD 214 (286)
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCC
Confidence 999999999999999999999999999999865 48999999999999888764
No 132
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-49 Score=339.97 Aligned_cols=196 Identities=29% Similarity=0.400 Sum_probs=167.5
Q ss_pred cEEEEeEEEEeCC-----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCc---hhh
Q 027067 10 RLLLKNVSCMRNA-----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG---IFH 81 (229)
Q Consensus 10 ~l~l~~l~~~~~~-----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~---~~~ 81 (229)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... ...
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 4899999999974 46999999999999999999999999999999999999999999999999876421 112
Q ss_pred hhhhcceEeeccc--ccCCCCCHHHhHHHHHHhcC-c----cccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHH
Q 027067 82 QYKLQLNWLSLKD--AVKEKFTVLDNVQWFEVLEG-K----QGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARLL 153 (229)
Q Consensus 82 ~~~~~~~~~~~~~--~~~~~~tv~e~l~~~~~~~~-~----~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral 153 (229)
.++..++|++|++ .+++ .|+.||+.+...... . ...+.++++.+++. ...++++.+|||||||||+|||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al 160 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGIL 160 (280)
T ss_pred HHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 3456799999986 3454 699999987543221 1 12345678899997 467999999999999999999999
Q ss_pred hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
+.+|++|||||||++||+.+++.+.+++.+++++|+|||++||+++++...+|
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d 213 (280)
T PRK13649 161 AMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYAD 213 (280)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCC
Confidence 99999999999999999999999999999987778999999999999988764
No 133
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-49 Score=368.31 Aligned_cols=198 Identities=25% Similarity=0.366 Sum_probs=174.8
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
++|+++|++++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.........+..++
T Consensus 4 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 83 (510)
T PRK09700 4 PYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIG 83 (510)
T ss_pred ceEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeE
Confidence 58999999999998899999999999999999999999999999999999999999999999999865432222335699
Q ss_pred EeecccccCCCCCHHHhHHHHHH----hcC--------ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcC
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEV----LEG--------KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAID 156 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~----~~~--------~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 156 (229)
|++|++.+++.+||.||+.+... ..+ ...++.++++.+|+.+..++++.+|||||||||+|||||+.+
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~ 163 (510)
T PRK09700 84 IIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLD 163 (510)
T ss_pred EEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999976321 011 112356789999998888999999999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|++|||||||++||+.+++.+.+++.+++++|.|||++|||++++...+|
T Consensus 164 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d 213 (510)
T PRK09700 164 AKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICD 213 (510)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999999999999998789999999999999988764
No 134
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=7.4e-49 Score=327.32 Aligned_cols=192 Identities=26% Similarity=0.339 Sum_probs=168.1
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067 11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL 90 (229)
Q Consensus 11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~ 90 (229)
++++||+++|++ .++++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.... ..+..++|+
T Consensus 1 ~~~~~l~~~~~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~---~~~~~i~~v 75 (213)
T TIGR01277 1 LALDKVRYEYEH--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA---PYQRPVSML 75 (213)
T ss_pred CeEEeeeEEeCC--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC---hhccceEEE
Confidence 478999999974 578999999999999999999999999999999999999999999999875422 234679999
Q ss_pred ecccccCCCCCHHHhHHHHHHhc-C----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCC
Q 027067 91 SLKDAVKEKFTVLDNVQWFEVLE-G----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEP 165 (229)
Q Consensus 91 ~~~~~~~~~~tv~e~l~~~~~~~-~----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEP 165 (229)
+|++.+++.+|+.||+.+..... . ...++.++++.+++.+..++.+.+||+|||||++||||++.+|+++|||||
T Consensus 76 ~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 155 (213)
T TIGR01277 76 FQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEP 155 (213)
T ss_pred eccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 99999999899999997643211 1 122456789999998889999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhcc
Q 027067 166 SVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 166 t~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~~ 207 (229)
|++||+.+++.+.+++.++.++ +.|||++||+++++.+++|.
T Consensus 156 t~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~ 198 (213)
T TIGR01277 156 FSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQ 198 (213)
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCe
Confidence 9999999999999999998654 89999999999999887763
No 135
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-48 Score=345.19 Aligned_cols=198 Identities=21% Similarity=0.330 Sum_probs=171.6
Q ss_pred CcEEEEeEEEEeC----------CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCc
Q 027067 9 PRLLLKNVSCMRN----------AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG 78 (229)
Q Consensus 9 ~~l~l~~l~~~~~----------~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~ 78 (229)
++|+++||++.|+ ..++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++...+
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~ 83 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD 83 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCC
Confidence 5899999999995 257999999999999999999999999999999999999999999999999987643
Q ss_pred hh--hhhhhcceEeeccc--ccCCCCCHHHhHHHHHHhc-C-----ccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHH
Q 027067 79 IF--HQYKLQLNWLSLKD--AVKEKFTVLDNVQWFEVLE-G-----KQGNSLPALELMGLG-RLAKEKARMLSMGQRKRL 147 (229)
Q Consensus 79 ~~--~~~~~~~~~~~~~~--~~~~~~tv~e~l~~~~~~~-~-----~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv 147 (229)
.. ..++..++|++|++ .+.+.+++.+++....... . ...++.++++.+|+. ...++++++|||||||||
T Consensus 84 ~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv 163 (327)
T PRK11308 84 PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRI 163 (327)
T ss_pred HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHH
Confidence 21 23456799999997 5888899999986543221 1 123467889999996 477999999999999999
Q ss_pred HHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 148 QLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 148 ~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
+|||||+.+|++||+||||++||..++..+.++|.+++++ |.|+|+||||++.+..++|
T Consensus 164 ~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~ad 223 (327)
T PRK11308 164 AIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIAD 223 (327)
T ss_pred HHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence 9999999999999999999999999999999999998764 8999999999999988764
No 136
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-49 Score=367.68 Aligned_cols=198 Identities=23% Similarity=0.342 Sum_probs=175.2
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC--CccEEEEcCEeCCCCchhhhhhhc
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP--SAGEILWNGHDITQSGIFHQYKLQ 86 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~~~ 86 (229)
++|+++||+++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|+++|+++.........+..
T Consensus 4 ~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 83 (506)
T PRK13549 4 YLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAG 83 (506)
T ss_pred ceEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCC
Confidence 589999999999988999999999999999999999999999999999999996 899999999998654322223457
Q ss_pred ceEeecccccCCCCCHHHhHHHHHHhc--C------ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCC
Q 027067 87 LNWLSLKDAVKEKFTVLDNVQWFEVLE--G------KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRP 158 (229)
Q Consensus 87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~--~------~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 158 (229)
++|++|++.+++.+|+.||+.+..... . ...++.++++.+++.+..++++.+|||||||||+|||||+.+|+
T Consensus 84 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~ 163 (506)
T PRK13549 84 IAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQAR 163 (506)
T ss_pred eEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCC
Confidence 999999998999999999998753211 0 11245678999999888899999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 159 IWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 159 illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
+|||||||++||+.++..+.+++.+++++|.|||++|||++++...+|
T Consensus 164 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d 211 (506)
T PRK13549 164 LLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISD 211 (506)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcC
Confidence 999999999999999999999999998778999999999999988764
No 137
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=9.9e-49 Score=337.38 Aligned_cols=197 Identities=24% Similarity=0.334 Sum_probs=168.9
Q ss_pred CcEEEEeEEEEeCC---------eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCch
Q 027067 9 PRLLLKNVSCMRNA---------QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI 79 (229)
Q Consensus 9 ~~l~l~~l~~~~~~---------~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~ 79 (229)
++|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.....
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 82 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence 57999999999962 479999999999999999999999999999999999999999999999998864321
Q ss_pred hhhhhhcceEeecccc--cCCCCCHHHhHHHHHHhcC------ccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHH
Q 027067 80 FHQYKLQLNWLSLKDA--VKEKFTVLDNVQWFEVLEG------KQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLA 150 (229)
Q Consensus 80 ~~~~~~~~~~~~~~~~--~~~~~tv~e~l~~~~~~~~------~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lA 150 (229)
...+..++|++|++. +++..|+.+++.+...... ....+.++++.+++. ...++++.+|||||||||+||
T Consensus 83 -~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 161 (267)
T PRK15112 83 -SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLA 161 (267)
T ss_pred -hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHH
Confidence 223457999999874 5677899999876433221 112356789999994 677889999999999999999
Q ss_pred HHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 151 RLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 151 ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
|||+.+|++|||||||++||+.+++.+.+++.+++++ |.|||++||+++++..++|
T Consensus 162 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d 218 (267)
T PRK15112 162 RALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISD 218 (267)
T ss_pred HHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcC
Confidence 9999999999999999999999999999999998764 8999999999999988765
No 138
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-48 Score=334.65 Aligned_cols=197 Identities=28% Similarity=0.373 Sum_probs=169.3
Q ss_pred CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC-----CccEEEEcCEeCCCCch-hh
Q 027067 8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP-----SAGEILWNGHDITQSGI-FH 81 (229)
Q Consensus 8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-----~~G~I~~~g~~~~~~~~-~~ 81 (229)
.++|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++..... ..
T Consensus 10 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 10 QPQIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred ceeEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 4689999999999988999999999999999999999999999999999999985 79999999998753211 12
Q ss_pred hhhhcceEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHHHH
Q 027067 82 QYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLARL 152 (229)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lAra 152 (229)
..+..++|++|++.+++ .|+.||+.+.....+. ...+.++++.+++. +..++++.+|||||||||+||||
T Consensus 90 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lara 168 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIART 168 (258)
T ss_pred HHhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHH
Confidence 34567999999988887 8999999875432211 12345688888883 45788999999999999999999
Q ss_pred HhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 153 LAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 153 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|+.+|++|||||||++||+.+++.+.++++++++ +.|||++||+++++.+++|
T Consensus 169 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~~~~~~~d 221 (258)
T PRK14268 169 LAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQQAARISD 221 (258)
T ss_pred HHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHHhCC
Confidence 9999999999999999999999999999999864 7999999999999988765
No 139
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-49 Score=331.98 Aligned_cols=192 Identities=24% Similarity=0.348 Sum_probs=168.2
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW 89 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 89 (229)
+++++||+++|++.. .++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..... ....++|
T Consensus 1 ~l~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~---~~~~i~~ 75 (232)
T PRK10771 1 MLKLTDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP---SRRPVSM 75 (232)
T ss_pred CeEEEEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh---hhccEEE
Confidence 589999999998654 39999999999999999999999999999999999999999999998764321 2357899
Q ss_pred eecccccCCCCCHHHhHHHHHHhc---C--ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeC
Q 027067 90 LSLKDAVKEKFTVLDNVQWFEVLE---G--KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDE 164 (229)
Q Consensus 90 ~~~~~~~~~~~tv~e~l~~~~~~~---~--~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDE 164 (229)
++|++.+++.+|+.||+.+..... . ...++.++++.+++.+..++++.+||||||||++||||++.+|+++||||
T Consensus 76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE 155 (232)
T PRK10771 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDE 155 (232)
T ss_pred EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 999999999899999997642111 0 12346678999999988999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067 165 PSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 165 Pt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~ 206 (229)
||++||+.+++.+.+++.++.+ .|.|||++||+++++.+++|
T Consensus 156 P~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d 198 (232)
T PRK10771 156 PFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAP 198 (232)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCC
Confidence 9999999999999999999865 48999999999999988776
No 140
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=8.1e-49 Score=323.07 Aligned_cols=189 Identities=29% Similarity=0.487 Sum_probs=165.6
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW 89 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 89 (229)
+|+++|++++|+++.+++ +||+|++||+++|+|+||||||||+++|+|+.+|++|+|+++|.++.... ...++|
T Consensus 1 ~l~~~~l~~~~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~-----~~~~~~ 74 (195)
T PRK13541 1 MLSLHQLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA-----KPYCTY 74 (195)
T ss_pred CeEEEEeeEEECCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh-----hhhEEe
Confidence 488999999998776665 99999999999999999999999999999999999999999998875321 234788
Q ss_pred eecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 027067 90 LSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVAL 169 (229)
Q Consensus 90 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~L 169 (229)
++++..+++..|+.||+.+..........+.++++.+++.+..++++.+||+|||||++||||++.+|+++||||||++|
T Consensus 75 ~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~L 154 (195)
T PRK13541 75 IGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNL 154 (195)
T ss_pred ccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 98887777889999999875543333345667889999988889999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067 170 DYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA 204 (229)
Q Consensus 170 D~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~ 204 (229)
|+.+++.+.+++++..+++.|+|++||+++.++.+
T Consensus 155 D~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~ 189 (195)
T PRK13541 155 SKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSA 189 (195)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchh
Confidence 99999999999987667789999999999877663
No 141
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-48 Score=338.11 Aligned_cols=197 Identities=25% Similarity=0.343 Sum_probs=169.7
Q ss_pred cEEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCc-hhhhhhhcc
Q 027067 10 RLLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG-IFHQYKLQL 87 (229)
Q Consensus 10 ~l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~-~~~~~~~~~ 87 (229)
+++++||+++|+ ++++++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.... .....+..+
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred CEEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 588999999996 467999999999999999999999999999999999999999999999999885211 112345679
Q ss_pred eEeecccc-cCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEE
Q 027067 88 NWLSLKDA-VKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWL 161 (229)
Q Consensus 88 ~~~~~~~~-~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ill 161 (229)
+|++|++. .+...|+.||+.+...... ....+.++++.+++.++.++++.+|||||+||++|||||+.+|++||
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~lll 160 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIV 160 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999863 3334699999986532211 11345678999999989999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 162 LDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 162 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|||||++||+.++..+.+++.+++++|.|||++||+++++.+.+|
T Consensus 161 lDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d 205 (275)
T PRK13639 161 LDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYAD 205 (275)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCC
Confidence 999999999999999999999987778999999999999988775
No 142
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.6e-49 Score=338.14 Aligned_cols=198 Identities=25% Similarity=0.334 Sum_probs=170.6
Q ss_pred CCCcEEEEeEEEEeC--CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhh
Q 027067 7 PLPRLLLKNVSCMRN--AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK 84 (229)
Q Consensus 7 ~~~~l~l~~l~~~~~--~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~ 84 (229)
+.++++++|++++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..... ..++
T Consensus 4 ~~~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~-~~~~ 82 (271)
T PRK13632 4 KSVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENL-KEIR 82 (271)
T ss_pred cceEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCH-HHHh
Confidence 346899999999995 5689999999999999999999999999999999999999999999999999864322 2345
Q ss_pred hcceEeecccc-cCCCCCHHHhHHHHHHhcC-c----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCC
Q 027067 85 LQLNWLSLKDA-VKEKFTVLDNVQWFEVLEG-K----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRP 158 (229)
Q Consensus 85 ~~~~~~~~~~~-~~~~~tv~e~l~~~~~~~~-~----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 158 (229)
..++|++|++. .++..|+.||+.+...... . ...+.++++.+++.+..++++.+||||||||++|||||+.+|+
T Consensus 83 ~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 162 (271)
T PRK13632 83 KKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPE 162 (271)
T ss_pred cceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 67999999874 5667899999987543211 1 1235678899999989999999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 159 IWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 159 illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
+|||||||+|||+.+++.+.+++.+++++ +.|||++||+++++. .+|
T Consensus 163 lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d 210 (271)
T PRK13632 163 IIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LAD 210 (271)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCC
Confidence 99999999999999999999999998766 489999999999885 454
No 143
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=1.5e-48 Score=327.44 Aligned_cols=197 Identities=25% Similarity=0.347 Sum_probs=167.2
Q ss_pred cEEEEeEEEEeCC-------eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEc--CE--eCCCCc
Q 027067 10 RLLLKNVSCMRNA-------QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN--GH--DITQSG 78 (229)
Q Consensus 10 ~l~l~~l~~~~~~-------~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~--g~--~~~~~~ 78 (229)
||+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++ |. ++...+
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 5899999999962 479999999999999999999999999999999999999999999998 43 443222
Q ss_pred hhh--h-hhhcceEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCCh-hhcCCCCCCChhHHHHHHH
Q 027067 79 IFH--Q-YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGR-LAKEKARMLSMGQRKRLQL 149 (229)
Q Consensus 79 ~~~--~-~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~l 149 (229)
... . .+..++|++|++.+++.+|+.||+.+....... ...+.++++.+++.+ ..++++.+||||||||++|
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~l 160 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNI 160 (224)
T ss_pred HHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHH
Confidence 111 1 234689999999999999999999764322111 224567889999976 4588999999999999999
Q ss_pred HHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 150 ARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 150 Aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
||||+.+|++|||||||++||+.+++.+.+++++++++|.|||++||+++.+..++|
T Consensus 161 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d 217 (224)
T TIGR02324 161 ARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVAD 217 (224)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcc
Confidence 999999999999999999999999999999999988778999999999999988776
No 144
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-48 Score=334.34 Aligned_cols=196 Identities=26% Similarity=0.335 Sum_probs=169.1
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC-----CccEEEEcCEeCCC--Cchhh
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP-----SAGEILWNGHDITQ--SGIFH 81 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-----~~G~I~~~g~~~~~--~~~~~ 81 (229)
++|+++||+++|+++++|+|+||+|.+||+++|+||||||||||+++|+|+++| ++|+|+++|+++.. ... .
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~-~ 81 (253)
T PRK14267 3 FAIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP-I 81 (253)
T ss_pred ceEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh-H
Confidence 479999999999988999999999999999999999999999999999999987 49999999998852 111 2
Q ss_pred hhhhcceEeecccccCCCCCHHHhHHHHHHhcC---c----cccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHH
Q 027067 82 QYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG---K----QGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLA 150 (229)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~----~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lA 150 (229)
.++..++|++|++.+++.+|+.||+.+...... . ...+.++++.+++. ...++++.+|||||||||+||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 161 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIA 161 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHH
Confidence 345679999999999999999999987543211 1 12345678888874 356889999999999999999
Q ss_pred HHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 151 RLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 151 ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|||+.+|++|||||||++||+.+++.+.++++++++ ++|||++||+++++...+|
T Consensus 162 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d 216 (253)
T PRK14267 162 RALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPAQAARVSD 216 (253)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHhhCC
Confidence 999999999999999999999999999999999865 6899999999999888765
No 145
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-48 Score=336.64 Aligned_cols=201 Identities=24% Similarity=0.292 Sum_probs=170.2
Q ss_pred CCCCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC-----CCccEEEEcCEeCCCCc-h
Q 027067 6 PPLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK-----PSAGEILWNGHDITQSG-I 79 (229)
Q Consensus 6 ~~~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~-----p~~G~I~~~g~~~~~~~-~ 79 (229)
+..++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.... .
T Consensus 9 ~~~~~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 9 SKNIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred CCCceEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 34568999999999998899999999999999999999999999999999999987 68999999999875211 1
Q ss_pred hhhhhhcceEeecccccCCCCCHHHhHHHHHHhcCc----cccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHHH
Q 027067 80 FHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK----QGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLAR 151 (229)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~----~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lAr 151 (229)
...++..++|++|++.+++. |+.||+.+....... ...+.++++.+++. +..++++.+|||||||||+|||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~lar 167 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPK-SIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIAR 167 (269)
T ss_pred HHHHhhceEEEccCCccchh-hHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHH
Confidence 12345679999999888874 999999875432211 12345567888763 4578899999999999999999
Q ss_pred HHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhccC
Q 027067 152 LLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNLR 208 (229)
Q Consensus 152 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~~ 208 (229)
||+.+|++|||||||++||+.+++.+.+++.++++ +.|||++||+++++.+.+|.-
T Consensus 168 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d~i 223 (269)
T PRK14259 168 TIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQQAVRVSDMT 223 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEE
Confidence 99999999999999999999999999999999854 789999999999999887643
No 146
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=1.9e-48 Score=326.38 Aligned_cols=195 Identities=25% Similarity=0.365 Sum_probs=170.1
Q ss_pred EEEEeEEEEeCC----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchh--hhhh
Q 027067 11 LLLKNVSCMRNA----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF--HQYK 84 (229)
Q Consensus 11 l~l~~l~~~~~~----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~--~~~~ 84 (229)
++++|+++.|++ +.+|+++||++++|++++|+|+||||||||+++|+|+++|++|+|+++|+++...... ..++
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 789999999975 6799999999999999999999999999999999999999999999999988543321 1345
Q ss_pred hcceEeecccccCCCCCHHHhHHHHHHhcC------ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCC
Q 027067 85 LQLNWLSLKDAVKEKFTVLDNVQWFEVLEG------KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRP 158 (229)
Q Consensus 85 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~------~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 158 (229)
..++|++|++.+++.+|+.||+.+...... ....+.++++.+++.+..++++.+||+|||||++|||||+.+|+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~ 161 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPK 161 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 679999999999988999999987543221 11245678999999988999999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067 159 IWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 159 illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~ 206 (229)
++||||||++||+.+++.+.++++++++ .++|||++||+++. .+.+|
T Consensus 162 illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~-~~~~d 209 (220)
T TIGR02982 162 LVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRI-LDVAD 209 (220)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HhhCC
Confidence 9999999999999999999999999876 48999999999974 45555
No 147
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=2.2e-48 Score=333.34 Aligned_cols=198 Identities=21% Similarity=0.264 Sum_probs=168.6
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEe-----CCCCchhh--
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHD-----ITQSGIFH-- 81 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~-----~~~~~~~~-- 81 (229)
++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|++ +.......
T Consensus 5 ~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~ 84 (258)
T PRK11701 5 PLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERR 84 (258)
T ss_pred ceEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHH
Confidence 47999999999988899999999999999999999999999999999999999999999999988 55432211
Q ss_pred h-hhhcceEeecccc--cCCCCCHHHhHHHHHHhcC------ccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHH
Q 027067 82 Q-YKLQLNWLSLKDA--VKEKFTVLDNVQWFEVLEG------KQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLAR 151 (229)
Q Consensus 82 ~-~~~~~~~~~~~~~--~~~~~tv~e~l~~~~~~~~------~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAr 151 (229)
. .+..++|++|++. +++.+|+.+|+.+...... ....+.++++.+++. ...++.+.+|||||||||+|||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~lar 164 (258)
T PRK11701 85 RLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIAR 164 (258)
T ss_pred HHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHH
Confidence 1 2346899999873 5667789999865321111 122356788999997 4789999999999999999999
Q ss_pred HHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 152 LLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 152 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
||+.+|++|||||||++||+.+++.+.+.+++++++ |.|||++||+++++.+++|
T Consensus 165 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d 220 (258)
T PRK11701 165 NLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAH 220 (258)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcC
Confidence 999999999999999999999999999999998664 8999999999999988765
No 148
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-48 Score=329.56 Aligned_cols=194 Identities=31% Similarity=0.408 Sum_probs=172.4
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067 11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL 90 (229)
Q Consensus 11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~ 90 (229)
|+++|++++|+++++++|+||+|++|++++|+|+||||||||+++|+|+++|++|+|+++|+++..... .+..++|+
T Consensus 1 l~~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~~i~~~ 77 (232)
T cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP---HKRPVNTV 77 (232)
T ss_pred CEEEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh---hhcceEEE
Confidence 478999999999999999999999999999999999999999999999999999999999998865322 24578999
Q ss_pred ecccccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCC
Q 027067 91 SLKDAVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEP 165 (229)
Q Consensus 91 ~~~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEP 165 (229)
+|++.+++.+|+.+|+.+...... ......++++.+++.+..++.+.+||+||+||++|||||+.+|+++|||||
T Consensus 78 ~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP 157 (232)
T cd03300 78 FQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEP 157 (232)
T ss_pred ecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999999888999999976543221 122456788999999899999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhcc
Q 027067 166 SVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 166 t~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~~ 207 (229)
|+|||+.+++.+.+++++++++ |.|||++||+++++.+++|.
T Consensus 158 ~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~ 200 (232)
T cd03300 158 LGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDR 200 (232)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCE
Confidence 9999999999999999998764 89999999999999887763
No 149
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-48 Score=338.26 Aligned_cols=195 Identities=26% Similarity=0.334 Sum_probs=168.0
Q ss_pred CcEEEEeEEEEeCC------eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhh
Q 027067 9 PRLLLKNVSCMRNA------QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQ 82 (229)
Q Consensus 9 ~~l~l~~l~~~~~~------~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~ 82 (229)
++++++|++++|++ +++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++........
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence 48999999999963 579999999999999999999999999999999999999999999999998864321123
Q ss_pred hhhcceEeecccc-cCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcC
Q 027067 83 YKLQLNWLSLKDA-VKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAID 156 (229)
Q Consensus 83 ~~~~~~~~~~~~~-~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 156 (229)
.++.++|++|++. .+...++.+|+.+.....+. ...+.++++.+|+.+..++++.+|||||||||+|||||+.+
T Consensus 83 ~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~ 162 (280)
T PRK13633 83 IRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMR 162 (280)
T ss_pred HhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 4567999999864 23346899999875432211 23456789999999999999999999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHh
Q 027067 157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIED 203 (229)
Q Consensus 157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~ 203 (229)
|++|||||||+|||+.+++.+.+++.++++ .|.|||++||+++++..
T Consensus 163 p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~ 210 (280)
T PRK13633 163 PECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE 210 (280)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc
Confidence 999999999999999999999999999865 48999999999999875
No 150
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-48 Score=332.54 Aligned_cols=197 Identities=25% Similarity=0.297 Sum_probs=169.3
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC-----CccEEEEcCEeCCCCc-hhhhh
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP-----SAGEILWNGHDITQSG-IFHQY 83 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-----~~G~I~~~g~~~~~~~-~~~~~ 83 (229)
+++++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++.... ....+
T Consensus 4 ~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~ 83 (258)
T PRK14241 4 RIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAV 83 (258)
T ss_pred cEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHH
Confidence 79999999999988999999999999999999999999999999999999974 7999999999874311 11234
Q ss_pred hhcceEeecccccCCCCCHHHhHHHHHHhcCc------cccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHHHHH
Q 027067 84 KLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK------QGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLARLL 153 (229)
Q Consensus 84 ~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~------~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lAral 153 (229)
+..++|++|++.+++..|+.||+.+....... ...+.++++.+++. +..++++.+|||||||||+|||||
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 163 (258)
T PRK14241 84 RRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAI 163 (258)
T ss_pred hcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 56799999999999989999999865432211 12345678888884 467889999999999999999999
Q ss_pred hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067 154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~ 207 (229)
+.+|++|||||||++||+.+++.+.+++.++++ ++|||++||+++++.+.+|.
T Consensus 164 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~~~~~~~d~ 216 (258)
T PRK14241 164 AVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQQAARVSDQ 216 (258)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCE
Confidence 999999999999999999999999999999854 68999999999999887764
No 151
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-48 Score=333.88 Aligned_cols=197 Identities=27% Similarity=0.350 Sum_probs=168.9
Q ss_pred CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC-----CccEEEEcCEeCCCCc-hhh
Q 027067 8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP-----SAGEILWNGHDITQSG-IFH 81 (229)
Q Consensus 8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-----~~G~I~~~g~~~~~~~-~~~ 81 (229)
.++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++.... ...
T Consensus 17 ~~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~ 96 (267)
T PRK14235 17 EIKMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVV 96 (267)
T ss_pred CceEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchH
Confidence 3689999999999988999999999999999999999999999999999999975 8999999999885321 112
Q ss_pred hhhhcceEeecccccCCCCCHHHhHHHHHHhcC---c----cccHHHHHHHhCCCh----hhcCCCCCCChhHHHHHHHH
Q 027067 82 QYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG---K----QGNSLPALELMGLGR----LAKEKARMLSMGQRKRLQLA 150 (229)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~----~~~~~~~l~~~~l~~----~~~~~~~~LSgGqkqRv~lA 150 (229)
..+..++|++|++.+++. |+.||+.+...... . ..++.++++.+++.+ ..++++.+|||||||||+||
T Consensus 97 ~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~la 175 (267)
T PRK14235 97 ELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIA 175 (267)
T ss_pred HHhhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHH
Confidence 345679999999888875 99999987543211 1 123467888999953 46788999999999999999
Q ss_pred HHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 151 RLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 151 ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|||+.+|++|||||||++||+.+++.+.+++.++++ +.|||++||+++++...+|
T Consensus 176 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~~~~~~~d 230 (267)
T PRK14235 176 RAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQQAARVSQ 230 (267)
T ss_pred HHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHHHHHhhCC
Confidence 999999999999999999999999999999999865 6899999999999988765
No 152
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=1.7e-48 Score=348.39 Aligned_cols=190 Identities=22% Similarity=0.331 Sum_probs=166.4
Q ss_pred eEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCch---hhhhhhcceEee
Q 027067 15 NVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI---FHQYKLQLNWLS 91 (229)
Q Consensus 15 ~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~---~~~~~~~~~~~~ 91 (229)
||+++|+++.+ ++||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++..... ....++.++|++
T Consensus 4 ~l~~~~~~~~~--~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~ 81 (354)
T TIGR02142 4 RFSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVF 81 (354)
T ss_pred EEEEEECCEEE--EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEe
Confidence 89999988764 9999999999999999999999999999999999999999999998753210 112356799999
Q ss_pred cccccCCCCCHHHhHHHHHHhcCc---cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 027067 92 LKDAVKEKFTVLDNVQWFEVLEGK---QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVA 168 (229)
Q Consensus 92 ~~~~~~~~~tv~e~l~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~ 168 (229)
|++.+++.+|+.||+.+....... ..++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||++
T Consensus 82 q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~ 161 (354)
T TIGR02142 82 QEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAA 161 (354)
T ss_pred cCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 999999999999999875432111 22367789999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 169 LDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 169 LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
||+.+++.+.+++++++++ |.|||++||+++++..++|
T Consensus 162 LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d 200 (354)
T TIGR02142 162 LDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLAD 200 (354)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCC
Confidence 9999999999999998765 8999999999999988765
No 153
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-48 Score=363.97 Aligned_cols=198 Identities=24% Similarity=0.353 Sum_probs=175.0
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
++|+++||+++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++........++.+++
T Consensus 3 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 82 (501)
T PRK11288 3 PYLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVA 82 (501)
T ss_pred ceEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEE
Confidence 58999999999998899999999999999999999999999999999999999999999999998864332223456799
Q ss_pred EeecccccCCCCCHHHhHHHHHH--hcC------ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeE
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEV--LEG------KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIW 160 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~--~~~------~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~il 160 (229)
|++|++.+++.+|+.||+.+... ... ...++.++++.+++.+..++++.+|||||||||+|||||+.+|++|
T Consensus 83 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~ll 162 (501)
T PRK11288 83 IIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVI 162 (501)
T ss_pred EEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 99999989999999999987421 111 1234567899999987789999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 161 LLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 161 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
||||||++||+.+++.+.+++.+++++|.|||++|||++++...+|
T Consensus 163 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d 208 (501)
T PRK11288 163 AFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCD 208 (501)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence 9999999999999999999999998789999999999999988764
No 154
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-48 Score=344.26 Aligned_cols=198 Identities=15% Similarity=0.215 Sum_probs=168.0
Q ss_pred CcEEEEeEEEEe----CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC----CCccEEEEcCEeCCCCchh
Q 027067 9 PRLLLKNVSCMR----NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK----PSAGEILWNGHDITQSGIF 80 (229)
Q Consensus 9 ~~l~l~~l~~~~----~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~----p~~G~I~~~g~~~~~~~~~ 80 (229)
++|+++||+++| +...+|+||||+|++||+++|+|+||||||||+++|+|+++ |++|+|+|+|+++......
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 479999999999 44679999999999999999999999999999999999986 5899999999998754322
Q ss_pred hh---hhhcceEeecccc--cCCCCCHHHhHHHHHHh---cC--------ccccHHHHHHHhCCCh---hhcCCCCCCCh
Q 027067 81 HQ---YKLQLNWLSLKDA--VKEKFTVLDNVQWFEVL---EG--------KQGNSLPALELMGLGR---LAKEKARMLSM 141 (229)
Q Consensus 81 ~~---~~~~~~~~~~~~~--~~~~~tv~e~l~~~~~~---~~--------~~~~~~~~l~~~~l~~---~~~~~~~~LSg 141 (229)
.. .++.++|++|++. +.+.+|+.+++...... .. ...++.++++.+||.+ ..++++++|||
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSg 161 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE 161 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence 11 1246999999875 67788999998653211 00 1134567899999974 46899999999
Q ss_pred hHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 142 GQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 142 GqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
||||||+|||||+.+|++||+||||++||+.++..+.+++++++++ |.|||+||||++.+..++|
T Consensus 162 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~d 227 (330)
T PRK15093 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWAD 227 (330)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCC
Confidence 9999999999999999999999999999999999999999998764 8999999999999988764
No 155
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-48 Score=333.51 Aligned_cols=200 Identities=28% Similarity=0.341 Sum_probs=169.2
Q ss_pred CCCCCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC-----CCccEEEEcCEeCCCCch
Q 027067 5 KPPLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK-----PSAGEILWNGHDITQSGI 79 (229)
Q Consensus 5 ~~~~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~-----p~~G~I~~~g~~~~~~~~ 79 (229)
.++.++++++|++++|+++.+|+++||+|++||+++|+|+||||||||+++|+|+.+ |++|+|+++|+++.....
T Consensus 16 ~~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 95 (268)
T PRK14248 16 EAKEHILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNI 95 (268)
T ss_pred CCCCceEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccc
Confidence 345578999999999998899999999999999999999999999999999999864 789999999998854211
Q ss_pred -hhhhhhcceEeecccccCCCCCHHHhHHHHHHhcCc------cccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHH
Q 027067 80 -FHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK------QGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQ 148 (229)
Q Consensus 80 -~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~------~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~ 148 (229)
....+..++|++|++.+++. |+.||+.+....... ...+.++++.+++. +..++++.+||||||||++
T Consensus 96 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~ 174 (268)
T PRK14248 96 NVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLC 174 (268)
T ss_pred cHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHH
Confidence 12345679999999888875 999999865322111 12245567788874 4568899999999999999
Q ss_pred HHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 149 LARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 149 lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|||||+.+|++|||||||+|||+.+++.+.+++.++++ +.|||++||+++++.+++|
T Consensus 175 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d 231 (268)
T PRK14248 175 IARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQQALRVSD 231 (268)
T ss_pred HHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHHHHHHhCC
Confidence 99999999999999999999999999999999999865 6899999999999988775
No 156
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-48 Score=330.98 Aligned_cols=194 Identities=27% Similarity=0.348 Sum_probs=168.4
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC---CCccEEEEcCEeCCCCchhhhhhhc
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK---PSAGEILWNGHDITQSGIFHQYKLQ 86 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~---p~~G~I~~~g~~~~~~~~~~~~~~~ 86 (229)
+++++|+++.|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++..... ..++..
T Consensus 2 ~~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~-~~~~~~ 80 (246)
T PRK14269 2 IAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDV-VALRKN 80 (246)
T ss_pred ceeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCH-HHHhhh
Confidence 6899999999998899999999999999999999999999999999999974 699999999999865432 234567
Q ss_pred ceEeecccccCCCCCHHHhHHHHHHhcC-------ccccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHHHHHhc
Q 027067 87 LNWLSLKDAVKEKFTVLDNVQWFEVLEG-------KQGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLARLLAI 155 (229)
Q Consensus 87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~-------~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lAral~~ 155 (229)
++|++|++.+++ .|++||+.+...... ...++.++++.+++. +..++++.+|||||||||+|||||+.
T Consensus 81 i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 159 (246)
T PRK14269 81 VGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAI 159 (246)
T ss_pred EEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 999999998886 699999987543221 112345778999995 34688899999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
+|+++||||||++||+.++..+.+.+.++.+ +.|||++||+++++.+++|
T Consensus 160 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d 209 (246)
T PRK14269 160 KPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQQGKRVAD 209 (246)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHhhCc
Confidence 9999999999999999999999999999864 8999999999999988765
No 157
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-48 Score=336.42 Aligned_cols=196 Identities=27% Similarity=0.298 Sum_probs=170.1
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCC--------ccEEEEcCEeCCCCchhh
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPS--------AGEILWNGHDITQSGIFH 81 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~--------~G~I~~~g~~~~~~~~~~ 81 (229)
||+++|++++|+++.+|+++||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.++..... .
T Consensus 1 ml~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~-~ 79 (272)
T PRK13547 1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA-P 79 (272)
T ss_pred CeEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH-H
Confidence 589999999999999999999999999999999999999999999999999998 9999999998764332 2
Q ss_pred hhhhcceEeecccccCCCCCHHHhHHHHHHhc----C-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHH
Q 027067 82 QYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLE----G-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARL 152 (229)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~----~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAra 152 (229)
..+..++|++|++.+++.+|+.||+.+..... . ....+.++++.+++.+..++++.+|||||||||+||||
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lara 159 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARV 159 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence 34456899999887666789999997642110 0 11235678889999988999999999999999999999
Q ss_pred Hh---------cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 153 LA---------IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 153 l~---------~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
|+ .+|++|||||||++||+.+++.+.++++++.++ |.|||++||+++++.+++|
T Consensus 160 l~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d 223 (272)
T PRK13547 160 LAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHAD 223 (272)
T ss_pred HhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCC
Confidence 99 599999999999999999999999999998765 8999999999999988765
No 158
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=1.1e-48 Score=320.76 Aligned_cols=181 Identities=27% Similarity=0.374 Sum_probs=154.1
Q ss_pred eCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCc-hhhhhhhcceEeecccc-cC
Q 027067 20 RNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG-IFHQYKLQLNWLSLKDA-VK 97 (229)
Q Consensus 20 ~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~-~~~~~~~~~~~~~~~~~-~~ 97 (229)
|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... .....+..++|++|++. .+
T Consensus 2 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred CCccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 46678999999999999999999999999999999999999999999999999875211 11234567899999873 23
Q ss_pred CCCCHHHhHHHHHHhcC-c----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q 027067 98 EKFTVLDNVQWFEVLEG-K----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYD 172 (229)
Q Consensus 98 ~~~tv~e~l~~~~~~~~-~----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~ 172 (229)
...|+.||+.+...... . ..++.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||++||+.
T Consensus 82 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 161 (190)
T TIGR01166 82 FAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPA 161 (190)
T ss_pred ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 35699999987533211 1 123567889999998899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEeCChhh
Q 027067 173 GVRLLEYIIAEHRKKGGIVIVATHLPIQ 200 (229)
Q Consensus 173 ~~~~l~~~l~~~~~~g~tii~vtH~~~~ 200 (229)
+++.+.+++.+++++|.|||++||++++
T Consensus 162 ~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 162 GREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 9999999999998778999999999864
No 159
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-48 Score=342.60 Aligned_cols=197 Identities=18% Similarity=0.235 Sum_probs=167.8
Q ss_pred cEEEEeEEEEeCC----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC----CCccEEEEcCEeCCCCchhh
Q 027067 10 RLLLKNVSCMRNA----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK----PSAGEILWNGHDITQSGIFH 81 (229)
Q Consensus 10 ~l~l~~l~~~~~~----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~----p~~G~I~~~g~~~~~~~~~~ 81 (229)
+|+++||++.|+. ..+|+||||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|+++.......
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 6999999999976 479999999999999999999999999999999999997 48999999999987543211
Q ss_pred --h-hhhcceEeeccc--ccCCCCCHHHhHHHHHHhc-C-----ccccHHHHHHHhCCCh---hhcCCCCCCChhHHHHH
Q 027067 82 --Q-YKLQLNWLSLKD--AVKEKFTVLDNVQWFEVLE-G-----KQGNSLPALELMGLGR---LAKEKARMLSMGQRKRL 147 (229)
Q Consensus 82 --~-~~~~~~~~~~~~--~~~~~~tv~e~l~~~~~~~-~-----~~~~~~~~l~~~~l~~---~~~~~~~~LSgGqkqRv 147 (229)
. .++.++|++|++ .+.+.+++.+++....... + ..+.+.++++.+||.+ ..++++++|||||||||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv 162 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRV 162 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHH
Confidence 1 123699999997 5788899988875433221 1 1234668899999963 56899999999999999
Q ss_pred HHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067 148 QLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 148 ~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~ 206 (229)
+|||||+.+|++||+||||++||+.++..+.++++++++ .|.|+|+||||++.+...+|
T Consensus 163 ~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~ad 222 (326)
T PRK11022 163 MIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAH 222 (326)
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 999999999999999999999999999999999999876 58999999999999987664
No 160
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=4.4e-48 Score=330.37 Aligned_cols=199 Identities=22% Similarity=0.226 Sum_probs=167.3
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEe-----CCCCchhh--
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHD-----ITQSGIFH-- 81 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~-----~~~~~~~~-- 81 (229)
++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|++ +.......
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (253)
T TIGR02323 2 PLLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81 (253)
T ss_pred ceEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHH
Confidence 47999999999998889999999999999999999999999999999999999999999999976 54332211
Q ss_pred -hhhhcceEeecccc--cCCCCCHHHhHHHHHH-hc-----CccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHH
Q 027067 82 -QYKLQLNWLSLKDA--VKEKFTVLDNVQWFEV-LE-----GKQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLAR 151 (229)
Q Consensus 82 -~~~~~~~~~~~~~~--~~~~~tv~e~l~~~~~-~~-----~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAr 151 (229)
..+..++|++|++. +++..++.+|+.+... .. .....+.++++.+++. ...++.+.+|||||||||+|||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~lar 161 (253)
T TIGR02323 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIAR 161 (253)
T ss_pred HhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHH
Confidence 12346899999864 4455688888864321 11 1123456789999997 5789999999999999999999
Q ss_pred HHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhcc
Q 027067 152 LLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 152 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~~ 207 (229)
||+.+|++|||||||++||+.+++.+.+++.++.+ .|.|||+|||+++++.+.+|.
T Consensus 162 al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~ 218 (253)
T TIGR02323 162 NLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQR 218 (253)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCE
Confidence 99999999999999999999999999999998765 489999999999999887653
No 161
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-48 Score=335.39 Aligned_cols=199 Identities=24% Similarity=0.315 Sum_probs=170.5
Q ss_pred CCCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC-----CCccEEEEcCEeCCCCch-h
Q 027067 7 PLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK-----PSAGEILWNGHDITQSGI-F 80 (229)
Q Consensus 7 ~~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~-----p~~G~I~~~g~~~~~~~~-~ 80 (229)
..++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++..... .
T Consensus 36 ~~~~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 36 GETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred CCceEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 4468999999999998899999999999999999999999999999999999987 689999999998753211 1
Q ss_pred hhhhhcceEeecccccCCCCCHHHhHHHHHHhcC----ccccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHHHH
Q 027067 81 HQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG----KQGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLARL 152 (229)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~----~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lAra 152 (229)
...+..++|++|++.+++. |+.||+.+...... ...++.++++.+++. +..++++.+|||||||||+||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAra 194 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARA 194 (285)
T ss_pred HhhhccEEEEecCCccCcC-CHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHH
Confidence 2345679999999888875 99999987543221 123456778888884 45789999999999999999999
Q ss_pred HhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067 153 LAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 153 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~ 207 (229)
|+.+|++|||||||++||+.+++.+.++|+++++ +.|||++||+++++..++|.
T Consensus 195 L~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~~i~~~~dr 248 (285)
T PRK14254 195 IAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQQAARISDK 248 (285)
T ss_pred HHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHhhcCE
Confidence 9999999999999999999999999999999876 47999999999999887764
No 162
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-48 Score=333.02 Aligned_cols=195 Identities=24% Similarity=0.300 Sum_probs=169.3
Q ss_pred CCcEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhh
Q 027067 8 LPRLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL 85 (229)
Q Consensus 8 ~~~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 85 (229)
.++++++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..... ...+.
T Consensus 5 ~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~-~~~~~ 83 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNF-EKLRK 83 (269)
T ss_pred CceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCH-HHHHh
Confidence 358999999999975 459999999999999999999999999999999999999999999999998865332 23456
Q ss_pred cceEeecccc-cCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCe
Q 027067 86 QLNWLSLKDA-VKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPI 159 (229)
Q Consensus 86 ~~~~~~~~~~-~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~i 159 (229)
.++|++|++. +++..++.+|+.+...... ....+.++++.+++.+..++++.+||+|||||++||||++.+|++
T Consensus 84 ~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l 163 (269)
T PRK13648 84 HIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSV 163 (269)
T ss_pred heeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 7999999874 6777899999876533211 112356788999999889999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHh
Q 027067 160 WLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIED 203 (229)
Q Consensus 160 lllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~ 203 (229)
|||||||++||+.+++.+.+++.+++++ |.|||++||+++++..
T Consensus 164 llLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~ 208 (269)
T PRK13648 164 IILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME 208 (269)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc
Confidence 9999999999999999999999998764 8999999999998865
No 163
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.3e-48 Score=328.28 Aligned_cols=197 Identities=25% Similarity=0.347 Sum_probs=167.6
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCC---CCC--CccEEEEcCEeCCCCch-hhh
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGF---SKP--SAGEILWNGHDITQSGI-FHQ 82 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl---~~p--~~G~I~~~g~~~~~~~~-~~~ 82 (229)
++|+++|+++.|+++++|+|+||+|++||+++|+||||||||||+++|+|+ ++| ++|+|.++|+++..... ...
T Consensus 2 ~~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14245 2 VKIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDE 81 (250)
T ss_pred cEEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHH
Confidence 589999999999988999999999999999999999999999999999997 454 58999999998864211 123
Q ss_pred hhhcceEeecccccCCCCCHHHhHHHHHHhcC------ccccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHHHH
Q 027067 83 YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG------KQGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLARL 152 (229)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~------~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lAra 152 (229)
.+..++|++|++.+++ .|+.||+.+...... ....+.++++.+++. +..++++.+|||||||||+||||
T Consensus 82 ~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 160 (250)
T PRK14245 82 LRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARA 160 (250)
T ss_pred HhhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHH
Confidence 4567999999988886 599999986533221 112345778888885 35688999999999999999999
Q ss_pred HhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067 153 LAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 153 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~ 207 (229)
|+.+|++|||||||+|||+.+++.+.+++++++ +++|||++||+++++.+.+|.
T Consensus 161 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~~~~~~d~ 214 (250)
T PRK14245 161 MAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQQAARVSDK 214 (250)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhCCE
Confidence 999999999999999999999999999999985 478999999999999887753
No 164
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.8e-48 Score=330.15 Aligned_cols=198 Identities=25% Similarity=0.365 Sum_probs=168.6
Q ss_pred CCCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC--C---CccEEEEcCEeCCCCch-h
Q 027067 7 PLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK--P---SAGEILWNGHDITQSGI-F 80 (229)
Q Consensus 7 ~~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~--p---~~G~I~~~g~~~~~~~~-~ 80 (229)
+.++|+++|+++.|+++++|+++||+|++||+++|+||||||||||+++|+|+++ | ++|+|+++|+++..... .
T Consensus 9 ~~~~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 9 KQEVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred CCceEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 4468999999999998899999999999999999999999999999999999987 3 58999999998753211 1
Q ss_pred hhhhhcceEeecccccCCCCCHHHhHHHHHHhcCc------cccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHH
Q 027067 81 HQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK------QGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLA 150 (229)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~------~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lA 150 (229)
..++..++|++|++.+++. |++||+.+.....+. ..++.++++.+++. +..++++.+||||||||++||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~la 167 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIA 167 (259)
T ss_pred HHHhhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHH
Confidence 2345679999999888875 999999875432211 12245678888885 346889999999999999999
Q ss_pred HHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 151 RLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 151 ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|||+.+|++|||||||++||+.++..+.+++.++++ +.|+|++||+++++.+++|
T Consensus 168 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d 222 (259)
T PRK14274 168 RALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQQAARVSD 222 (259)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhCC
Confidence 999999999999999999999999999999999865 7899999999999988775
No 165
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=5.7e-48 Score=327.11 Aligned_cols=194 Identities=30% Similarity=0.397 Sum_probs=172.5
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067 11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL 90 (229)
Q Consensus 11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~ 90 (229)
++++|++++|+++++|+|+||++.+||+++|+||||||||||+++|+|+++|++|+|+++|.++.... ..+..++|+
T Consensus 1 i~i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~---~~~~~i~~~ 77 (237)
T TIGR00968 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVH---ARDRKIGFV 77 (237)
T ss_pred CEEEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC---hhhcCEEEE
Confidence 47899999999999999999999999999999999999999999999999999999999999886432 234579999
Q ss_pred ecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCC
Q 027067 91 SLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEP 165 (229)
Q Consensus 91 ~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEP 165 (229)
+|++.+++..|+.||+.+.....+. .....++++.+++.+..++.+.+||+||+||++|||||+.+|+++|||||
T Consensus 78 ~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP 157 (237)
T TIGR00968 78 FQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEP 157 (237)
T ss_pred ecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999999889999999865432211 22356788999998889999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhcc
Q 027067 166 SVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 166 t~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~~ 207 (229)
|++||+.+++.+.+++.+++++ ++|||++||+++++.+++|.
T Consensus 158 ~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~ 200 (237)
T TIGR00968 158 FGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADR 200 (237)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCE
Confidence 9999999999999999998765 89999999999999887753
No 166
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-48 Score=336.33 Aligned_cols=198 Identities=22% Similarity=0.280 Sum_probs=166.9
Q ss_pred CcEEEEeEEEEeCCe-----eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCC----ch
Q 027067 9 PRLLLKNVSCMRNAQ-----QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQS----GI 79 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~-----~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~----~~ 79 (229)
..|+++||+++|+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|.++... ..
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 469999999999764 499999999999999999999999999999999999999999999999987421 11
Q ss_pred hhhhhhcceEeeccccc-CCCCCHHHhHHHHHHhcC-c----cccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHH
Q 027067 80 FHQYKLQLNWLSLKDAV-KEKFTVLDNVQWFEVLEG-K----QGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARL 152 (229)
Q Consensus 80 ~~~~~~~~~~~~~~~~~-~~~~tv~e~l~~~~~~~~-~----~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAra 152 (229)
...++..++|++|++.. +...|+.||+.+...... . ...+.++++.+++. +..++++.+|||||||||+||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lara 164 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGI 164 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHH
Confidence 12345679999998632 223599999987543211 1 12345678899994 68899999999999999999999
Q ss_pred HhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067 153 LAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 153 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~ 206 (229)
|+.+|++|||||||++||+.+++.+.+++.++.+ .|+|||++||+++++..++|
T Consensus 165 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d 219 (289)
T PRK13645 165 IAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIAD 219 (289)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCC
Confidence 9999999999999999999999999999999865 48999999999999888765
No 167
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1.1e-47 Score=340.15 Aligned_cols=201 Identities=20% Similarity=0.241 Sum_probs=170.4
Q ss_pred CCCCcEEEEeEEEEeC----CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCC---ccEEEEcCEeCCCCc
Q 027067 6 PPLPRLLLKNVSCMRN----AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPS---AGEILWNGHDITQSG 78 (229)
Q Consensus 6 ~~~~~l~l~~l~~~~~----~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~ 78 (229)
...++|+++||++.|+ ...+|+||||+|++||+++|+|+||||||||+++|+|+++|+ +|+|+|+|+++...+
T Consensus 8 ~~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~ 87 (330)
T PRK09473 8 QADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLP 87 (330)
T ss_pred CCCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCC
Confidence 3457899999999994 367999999999999999999999999999999999999996 999999999987654
Q ss_pred hhh--hhh-hcceEeeccc--ccCCCCCHHHhHHHHHHhcC--c----cccHHHHHHHhCCCh---hhcCCCCCCChhHH
Q 027067 79 IFH--QYK-LQLNWLSLKD--AVKEKFTVLDNVQWFEVLEG--K----QGNSLPALELMGLGR---LAKEKARMLSMGQR 144 (229)
Q Consensus 79 ~~~--~~~-~~~~~~~~~~--~~~~~~tv~e~l~~~~~~~~--~----~~~~~~~l~~~~l~~---~~~~~~~~LSgGqk 144 (229)
... ..+ ..++|++|++ .+++.+|+.+++........ . ..++.++++.+++.+ ..++++++|||||+
T Consensus 88 ~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~ 167 (330)
T PRK09473 88 EKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMR 167 (330)
T ss_pred HHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHH
Confidence 221 122 4799999997 68888999998865432211 1 134567889999964 35789999999999
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 145 KRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 145 qRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
|||+|||||+.+|++||+||||++||+.++..+.+++.+++++ |.|+|+||||++.+..++|
T Consensus 168 QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~D 230 (330)
T PRK09473 168 QRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICD 230 (330)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCC
Confidence 9999999999999999999999999999999999999998765 8999999999999987664
No 168
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-47 Score=327.52 Aligned_cols=196 Identities=28% Similarity=0.348 Sum_probs=168.6
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC-----CccEEEEcCEeCCCCch-hhh
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP-----SAGEILWNGHDITQSGI-FHQ 82 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-----~~G~I~~~g~~~~~~~~-~~~ 82 (229)
++++++|++++|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|+++|+++..... ...
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (251)
T PRK14270 3 IKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVE 82 (251)
T ss_pred cEEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHH
Confidence 689999999999988999999999999999999999999999999999999875 79999999998854221 123
Q ss_pred hhhcceEeecccccCCCCCHHHhHHHHHHhcCc------cccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHHHH
Q 027067 83 YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK------QGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLARL 152 (229)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~------~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lAra 152 (229)
.+..++|++|++.+++ .|+.||+.+.....+. ..++.++++.+++. +..++++.+||+|||||++||||
T Consensus 83 ~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 161 (251)
T PRK14270 83 LRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIART 161 (251)
T ss_pred HHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHH
Confidence 4567999999988887 8999999875433211 12345678888874 45788999999999999999999
Q ss_pred HhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 153 LAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 153 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
++.+|++|||||||+|||+.++..+.++++++++ +.|||++||+++++.+.+|
T Consensus 162 l~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~d 214 (251)
T PRK14270 162 IAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQQASRVSD 214 (251)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHHHHHHhcC
Confidence 9999999999999999999999999999999866 5899999999999888765
No 169
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-48 Score=334.32 Aligned_cols=196 Identities=25% Similarity=0.270 Sum_probs=170.0
Q ss_pred CcEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCc---cEEEEcCEeCCCCchhhhh
Q 027067 9 PRLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSA---GEILWNGHDITQSGIFHQY 83 (229)
Q Consensus 9 ~~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~---G~I~~~g~~~~~~~~~~~~ 83 (229)
.+|+++|++++|++ +++++++||+|++||+++|+||||||||||+++|+|+++|++ |+|+++|+++..... ...
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~-~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTV-WDI 82 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCH-HHH
Confidence 57999999999964 569999999999999999999999999999999999999987 899999999865332 234
Q ss_pred hhcceEeecccc-cCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCC
Q 027067 84 KLQLNWLSLKDA-VKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDR 157 (229)
Q Consensus 84 ~~~~~~~~~~~~-~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 157 (229)
+.+++|++|++. .++..|+.||+.+....... ..++.++++.+++.+..++++.+|||||+||++|||||+.+|
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P 162 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEP 162 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 567999999974 56778999999865332221 123567899999999999999999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 158 PIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
++|||||||+|||+.+++.+.+++.++.++ |.|||++||+++++. .+|
T Consensus 163 ~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d 211 (282)
T PRK13640 163 KIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MAD 211 (282)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCC
Confidence 999999999999999999999999998764 899999999999985 454
No 170
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.6e-48 Score=311.47 Aligned_cols=163 Identities=29% Similarity=0.500 Sum_probs=150.3
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067 11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL 90 (229)
Q Consensus 11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~ 90 (229)
++++|++++|+++++|+++||++.+||+++|+||||||||||+++|+|+++|++|+|+++|+++.... ..++..++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~~i~~~ 78 (173)
T cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP--EEVKRRIGYL 78 (173)
T ss_pred CEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch--HhhhccEEEE
Confidence 47899999998888999999999999999999999999999999999999999999999999876432 2345679999
Q ss_pred ecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q 027067 91 SLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170 (229)
Q Consensus 91 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD 170 (229)
+|++.+++..|+.||+. |||||+||++|||||+.+|+++||||||++||
T Consensus 79 ~q~~~~~~~~tv~~~~~-------------------------------LS~G~~qrv~laral~~~p~illlDEPt~~LD 127 (173)
T cd03230 79 PEEPSLYENLTVRENLK-------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLD 127 (173)
T ss_pred ecCCccccCCcHHHHhh-------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCC
Confidence 99999888889999863 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 171 YDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 171 ~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
+.+++.+.+++++++++|.|+|++||+++++.+++|
T Consensus 128 ~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d 163 (173)
T cd03230 128 PESRREFWELLRELKKEGKTILLSSHILEEAERLCD 163 (173)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCC
Confidence 999999999999987778999999999999888776
No 171
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=1.4e-47 Score=326.95 Aligned_cols=197 Identities=24% Similarity=0.318 Sum_probs=167.3
Q ss_pred CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCC--CCCCccEEEEcCEeCCCCchhhhhhh
Q 027067 8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGF--SKPSAGEILWNGHDITQSGIFHQYKL 85 (229)
Q Consensus 8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl--~~p~~G~I~~~g~~~~~~~~~~~~~~ 85 (229)
.++|+++||++.|+++.+|+++||+|++||+++|+|+||||||||+++|+|+ ++|++|+|+++|.++...........
T Consensus 5 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 5 KPILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred CceEEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 3579999999999988999999999999999999999999999999999998 57999999999998865432111122
Q ss_pred cceEeecccccCCCCCHHHhHHHHHHhc----C---c-----cccHHHHHHHhCCC-hhhcCCCC-CCChhHHHHHHHHH
Q 027067 86 QLNWLSLKDAVKEKFTVLDNVQWFEVLE----G---K-----QGNSLPALELMGLG-RLAKEKAR-MLSMGQRKRLQLAR 151 (229)
Q Consensus 86 ~~~~~~~~~~~~~~~tv~e~l~~~~~~~----~---~-----~~~~~~~l~~~~l~-~~~~~~~~-~LSgGqkqRv~lAr 151 (229)
.++|++|++.+++..++.+|+.+..... . . ...+.++++.+++. ...++++. +|||||+|||+|||
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~ 164 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQ 164 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHH
Confidence 4778999988899899999987542210 0 0 12345678999997 46788887 59999999999999
Q ss_pred HHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067 152 LLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA 204 (229)
Q Consensus 152 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~ 204 (229)
||+.+|++|||||||++||+.+++.+.+++.+++++|.|||++||+++++...
T Consensus 165 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~ 217 (252)
T CHL00131 165 MALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYI 217 (252)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhh
Confidence 99999999999999999999999999999999877789999999999988764
No 172
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7e-48 Score=313.35 Aligned_cols=168 Identities=35% Similarity=0.467 Sum_probs=152.2
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCch-hhhhhhcceE
Q 027067 11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI-FHQYKLQLNW 89 (229)
Q Consensus 11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~-~~~~~~~~~~ 89 (229)
++++|++++|+++++++++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..... ....+..++|
T Consensus 1 i~~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (178)
T cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGM 80 (178)
T ss_pred CEEEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEE
Confidence 478999999998899999999999999999999999999999999999999999999999998765320 1234568999
Q ss_pred eecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 027067 90 LSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVAL 169 (229)
Q Consensus 90 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~L 169 (229)
++|++.+++..|+.||+.+. ||||||||++|||||+.+|+++||||||++|
T Consensus 81 ~~q~~~~~~~~t~~~~l~~~-----------------------------lS~G~~qr~~la~al~~~p~llilDEP~~~L 131 (178)
T cd03229 81 VFQDFALFPHLTVLENIALG-----------------------------LSGGQQQRVALARALAMDPDVLLLDEPTSAL 131 (178)
T ss_pred EecCCccCCCCCHHHheeec-----------------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccC
Confidence 99999888888999987542 9999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhcc
Q 027067 170 DYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 170 D~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~~ 207 (229)
|+.++..+.+++++++++ +.|+|++||+++++.+++|.
T Consensus 132 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~ 170 (178)
T cd03229 132 DPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADR 170 (178)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCE
Confidence 999999999999998776 79999999999999887763
No 173
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-47 Score=332.39 Aligned_cols=193 Identities=24% Similarity=0.273 Sum_probs=168.7
Q ss_pred cEEEEeEEEEeCC---eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067 10 RLLLKNVSCMRNA---QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ 86 (229)
Q Consensus 10 ~l~l~~l~~~~~~---~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 86 (229)
+|+++||+++|++ ..+|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|+++|+++..... ...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~-~~~~~~ 82 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENV-WNLRRK 82 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCH-HHHhcc
Confidence 7999999999974 359999999999999999999999999999999999999999999999999865332 234567
Q ss_pred ceEeecccc-cCCCCCHHHhHHHHHHhcC-c----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeE
Q 027067 87 LNWLSLKDA-VKEKFTVLDNVQWFEVLEG-K----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIW 160 (229)
Q Consensus 87 ~~~~~~~~~-~~~~~tv~e~l~~~~~~~~-~----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~il 160 (229)
++|++|++. +++..|+.||+.+...... . ...+.++++.+++.++.++++.+|||||||||+|||||+.+|++|
T Consensus 83 i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~ll 162 (277)
T PRK13642 83 IGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEII 162 (277)
T ss_pred eEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999974 5667899999986533211 1 123567889999998899999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHh
Q 027067 161 LLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIED 203 (229)
Q Consensus 161 llDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~ 203 (229)
||||||++||+.+++.+.+++.+++++ |.|||++||+++++..
T Consensus 163 llDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~ 206 (277)
T PRK13642 163 ILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAAS 206 (277)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh
Confidence 999999999999999999999998765 8999999999999864
No 174
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-47 Score=324.71 Aligned_cols=192 Identities=31% Similarity=0.421 Sum_probs=169.9
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067 11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL 90 (229)
Q Consensus 11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~ 90 (229)
|+++|++++|+++ +|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|+++|.++..... .+..++|+
T Consensus 1 l~~~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~---~~~~i~~~ 76 (235)
T cd03299 1 LKVENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP---EKRDISYV 76 (235)
T ss_pred CeeEeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh---hHcCEEEE
Confidence 5789999999875 8999999999999999999999999999999999999999999999998865322 24579999
Q ss_pred ecccccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCC
Q 027067 91 SLKDAVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEP 165 (229)
Q Consensus 91 ~~~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEP 165 (229)
+|++.+++.+|+.||+.+...... ....+.++++.+++.+..++++.+|||||+||++||||++.+|++++||||
T Consensus 77 ~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 156 (235)
T cd03299 77 PQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEP 156 (235)
T ss_pred eecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCC
Confidence 999999988999999986543221 112356789999999889999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 166 SVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 166 t~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
|++||+.+++.+.++++++..+ |.|+|++||++.++.+.+|
T Consensus 157 t~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d 198 (235)
T cd03299 157 FSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALAD 198 (235)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCC
Confidence 9999999999999999998654 8999999999999988765
No 175
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-47 Score=326.45 Aligned_cols=195 Identities=29% Similarity=0.387 Sum_probs=165.9
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC-----CccEEEEcCEeCCCCch-hhhh
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP-----SAGEILWNGHDITQSGI-FHQY 83 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-----~~G~I~~~g~~~~~~~~-~~~~ 83 (229)
.|+++||++.|+++++++|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|+++|+++..... ....
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (250)
T PRK14240 3 KISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQL 82 (250)
T ss_pred eEEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHH
Confidence 58999999999988999999999999999999999999999999999999763 69999999998753211 1234
Q ss_pred hhcceEeecccccCCCCCHHHhHHHHHHhcCc------cccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHHHHH
Q 027067 84 KLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK------QGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLARLL 153 (229)
Q Consensus 84 ~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~------~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lAral 153 (229)
+..++|++|++.+++ .|+.||+.+.....+. ...+.++++.+++. +..++++.+|||||||||+|||||
T Consensus 83 ~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 161 (250)
T PRK14240 83 RKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARAL 161 (250)
T ss_pred hccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 567999999988887 8999999875432211 12345567788764 456889999999999999999999
Q ss_pred hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
+.+|++|||||||++||+.+++.+.+++.++++ +.|||++||+++.+.+++|
T Consensus 162 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d 213 (250)
T PRK14240 162 AVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQQASRISD 213 (250)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHHHHHhhCC
Confidence 999999999999999999999999999999854 7899999999999888765
No 176
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-47 Score=327.50 Aligned_cols=196 Identities=26% Similarity=0.311 Sum_probs=167.4
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC-----CCccEEEEcCEeCCCCc-hhhh
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK-----PSAGEILWNGHDITQSG-IFHQ 82 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~-----p~~G~I~~~g~~~~~~~-~~~~ 82 (229)
++|+++|++++|+++++|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.... ....
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~ 82 (251)
T PRK14251 3 NIISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVE 82 (251)
T ss_pred ceEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHH
Confidence 37999999999998899999999999999999999999999999999999997 47999999999875321 1123
Q ss_pred hhhcceEeecccccCCCCCHHHhHHHHHHhcCc------cccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHHHH
Q 027067 83 YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK------QGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLARL 152 (229)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~------~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lAra 152 (229)
++..++|++|++.+++ .|+.||+.+.....+. ...+.++++.+++. ...++++.+||||||||++||||
T Consensus 83 ~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~lara 161 (251)
T PRK14251 83 LRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARA 161 (251)
T ss_pred hhccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHH
Confidence 4567999999988876 6999999865332211 12345678888884 45688999999999999999999
Q ss_pred HhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 153 LAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 153 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|+.+|+++||||||++||+.+++.+.+++.++++ +.|||++||+++++.+++|
T Consensus 162 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~~~~~~~d 214 (251)
T PRK14251 162 LAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQQAGRISD 214 (251)
T ss_pred HhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHHHHHhhcC
Confidence 9999999999999999999999999999999854 6899999999999988765
No 177
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-47 Score=330.93 Aligned_cols=200 Identities=26% Similarity=0.355 Sum_probs=167.7
Q ss_pred CCCCCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC-----CCccEEEEcCEeCCCCc-
Q 027067 5 KPPLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK-----PSAGEILWNGHDITQSG- 78 (229)
Q Consensus 5 ~~~~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~-----p~~G~I~~~g~~~~~~~- 78 (229)
.|..++|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|+++|+++....
T Consensus 19 ~~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 98 (271)
T PRK14238 19 APKKVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY 98 (271)
T ss_pred CCCceEEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccc
Confidence 345568999999999998889999999999999999999999999999999999987 69999999999875311
Q ss_pred hhhhhhhcceEeecccccCCCCCHHHhHHHHHHhcCc--c----ccHHHHHHHhC----CChhhcCCCCCCChhHHHHHH
Q 027067 79 IFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK--Q----GNSLPALELMG----LGRLAKEKARMLSMGQRKRLQ 148 (229)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~--~----~~~~~~l~~~~----l~~~~~~~~~~LSgGqkqRv~ 148 (229)
.....+..++|++|++.+++. |+.||+.+....... . ..+.++++.++ +.+..++++.+||||||||++
T Consensus 99 ~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~ 177 (271)
T PRK14238 99 SVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLC 177 (271)
T ss_pred cHHHHhhhEEEEecCCccccc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHH
Confidence 112345679999999888774 999999875432211 1 11234455554 345678899999999999999
Q ss_pred HHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 149 LARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 149 lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|||||+.+|++|||||||++||+.+++.+.+++.++.+ +.|||++||+++++..++|
T Consensus 178 laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~i~~~~d 234 (271)
T PRK14238 178 IARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQQAARISD 234 (271)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHHHHHHhCC
Confidence 99999999999999999999999999999999999865 7899999999999988775
No 178
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-47 Score=326.15 Aligned_cols=196 Identities=26% Similarity=0.327 Sum_probs=166.1
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCC--CC---CccEEEEcCEeCCCCch-hhh
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS--KP---SAGEILWNGHDITQSGI-FHQ 82 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~--~p---~~G~I~~~g~~~~~~~~-~~~ 82 (229)
++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+. +| ++|+|+++|+++..... ...
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14239 4 PILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVD 83 (252)
T ss_pred ceEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHh
Confidence 4799999999999889999999999999999999999999999999999995 46 59999999998753211 123
Q ss_pred hhhcceEeecccccCCCCCHHHhHHHHHHhcCc------cccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHHHH
Q 027067 83 YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK------QGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLARL 152 (229)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~------~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lAra 152 (229)
++..++|++|++.+++ .|+.||+.+.....+. ...+.++++.+++. +..++++.+|||||||||+||||
T Consensus 84 ~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 162 (252)
T PRK14239 84 LRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARV 162 (252)
T ss_pred hhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHH
Confidence 4567999999988887 7999999875432211 12244567888874 45688999999999999999999
Q ss_pred HhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 153 LAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 153 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|+.+|++|||||||++||+.+++.+.++++++.+ +.|||++||+++++..++|
T Consensus 163 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d 215 (252)
T PRK14239 163 LATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQQASRISD 215 (252)
T ss_pred HhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHHHHHHhCC
Confidence 9999999999999999999999999999999865 6899999999999888765
No 179
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=3.8e-48 Score=324.09 Aligned_cols=192 Identities=32% Similarity=0.464 Sum_probs=162.9
Q ss_pred cEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 10 RLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 10 ~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
.++++|++++|++ +.+++|+||+|++|++++|+||||||||||+++|+|+.+|++|+|+++|+++..... ...+..+
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~-~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDP-ADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCH-HHHHhhE
Confidence 3789999999975 579999999999999999999999999999999999999999999999998754332 2235579
Q ss_pred eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCC-----------CCCChhHHHHHHHHHHHhcC
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKA-----------RMLSMGQRKRLQLARLLAID 156 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgGqkqRv~lAral~~~ 156 (229)
+|++|++.+++ .|+.||+.+.... .......++++.+++.+..++.+ .+||||||||++||||++.+
T Consensus 81 ~~~~q~~~~~~-~tv~e~l~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~ 158 (220)
T cd03245 81 GYVPQDVTLFY-GTLRDNITLGAPL-ADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLND 158 (220)
T ss_pred EEeCCCCcccc-chHHHHhhcCCCC-CCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence 99999988876 5999998764211 11224556788888877776654 69999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|++|||||||++||+.+++.+.+++.+++++ .|||++||+++.+ +.+|
T Consensus 159 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~-~~~d 206 (220)
T cd03245 159 PPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPSLL-DLVD 206 (220)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHHHH-HhCC
Confidence 9999999999999999999999999998664 8999999999876 4554
No 180
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-47 Score=325.97 Aligned_cols=196 Identities=24% Similarity=0.365 Sum_probs=167.3
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCC-----ccEEEEcCEeCCCCch-hhh
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPS-----AGEILWNGHDITQSGI-FHQ 82 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~-----~G~I~~~g~~~~~~~~-~~~ 82 (229)
++++++||+++|+++.+|+++||+|++|++++|+||||||||||+++|+|+++|+ +|+|+++|+++..... ...
T Consensus 3 ~~l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 82 (251)
T PRK14249 3 PKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVN 82 (251)
T ss_pred ceEEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHH
Confidence 4799999999999888999999999999999999999999999999999999997 6999999998753211 123
Q ss_pred hhhcceEeecccccCCCCCHHHhHHHHHHhcCc------cccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHHHH
Q 027067 83 YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK------QGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLARL 152 (229)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~------~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lAra 152 (229)
++..++|++|++.+++. |+.||+.+....... .....++++.+++. +..++++.+|||||||||+||||
T Consensus 83 ~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~lara 161 (251)
T PRK14249 83 LRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARV 161 (251)
T ss_pred hhceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHH
Confidence 45679999999988875 999999875432211 12234566777764 45789999999999999999999
Q ss_pred HhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 153 LAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 153 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|+.+|++|||||||++||+.+++.+.+++.+++ ++.|||++||+++++.+++|
T Consensus 162 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~~~~~~~d 214 (251)
T PRK14249 162 LAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQQAARASD 214 (251)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhCC
Confidence 999999999999999999999999999999985 58999999999999998764
No 181
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-47 Score=326.23 Aligned_cols=197 Identities=25% Similarity=0.334 Sum_probs=168.5
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC--C---CccEEEEcCEeCCCCch-hhhh
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK--P---SAGEILWNGHDITQSGI-FHQY 83 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~--p---~~G~I~~~g~~~~~~~~-~~~~ 83 (229)
.++++|++++|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|+++|+++..... ....
T Consensus 4 ~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~ 83 (252)
T PRK14256 4 KVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSI 83 (252)
T ss_pred EEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHh
Confidence 6899999999998899999999999999999999999999999999999986 4 68999999998853211 1234
Q ss_pred hhcceEeecccccCCCCCHHHhHHHHHHhcC--c----cccHHHHHHHhCCCh----hhcCCCCCCChhHHHHHHHHHHH
Q 027067 84 KLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG--K----QGNSLPALELMGLGR----LAKEKARMLSMGQRKRLQLARLL 153 (229)
Q Consensus 84 ~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~--~----~~~~~~~l~~~~l~~----~~~~~~~~LSgGqkqRv~lAral 153 (229)
+..++|++|++.+++..|+.||+.+...... . ...+.++++.+++.. ..++.+.+||||||||++|||||
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral 163 (252)
T PRK14256 84 RRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTI 163 (252)
T ss_pred hccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHH
Confidence 5679999999999998999999976432211 1 123456788888853 45788999999999999999999
Q ss_pred hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067 154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~ 207 (229)
+.+|++|||||||++||+.+++.+.++++++++ +.|||++||+++++.+++|.
T Consensus 164 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~ 216 (252)
T PRK14256 164 AVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQQAARVSDY 216 (252)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHHHHHhhCCE
Confidence 999999999999999999999999999999865 58999999999999887763
No 182
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-47 Score=328.88 Aligned_cols=198 Identities=26% Similarity=0.327 Sum_probs=168.7
Q ss_pred CCCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC-----CCccEEEEcCEeCCCCch-h
Q 027067 7 PLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK-----PSAGEILWNGHDITQSGI-F 80 (229)
Q Consensus 7 ~~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~-----p~~G~I~~~g~~~~~~~~-~ 80 (229)
+.++|+++||+++|+++++|+|+||+|.+||+++|+||||||||||+++|+|+++ |++|+|.++|+++..... .
T Consensus 17 ~~~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 17 EEIALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred CCeEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 3468999999999998999999999999999999999999999999999999986 589999999998853211 1
Q ss_pred hhhhhcceEeecccccCCCCCHHHhHHHHHHhcCc------cccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHH
Q 027067 81 HQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK------QGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLA 150 (229)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~------~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lA 150 (229)
...+..++|++|++.+++ .|+.||+.+.....+. ...+.++++.+++. +..++++.+|||||+||++||
T Consensus 97 ~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~la 175 (267)
T PRK14237 97 YEMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIA 175 (267)
T ss_pred HHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHH
Confidence 234567999999988877 5999999875332211 12345668888884 457889999999999999999
Q ss_pred HHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 151 RLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 151 ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|||+.+|++|||||||++||+.+++.+.+++.++++ +.|||++||+++++.+++|
T Consensus 176 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d 230 (267)
T PRK14237 176 RAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNMQQAARASD 230 (267)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhcC
Confidence 999999999999999999999999999999999854 7899999999999988775
No 183
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=7.6e-48 Score=326.25 Aligned_cols=187 Identities=24% Similarity=0.363 Sum_probs=160.4
Q ss_pred EeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEee-cccccC
Q 027067 19 MRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLS-LKDAVK 97 (229)
Q Consensus 19 ~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~ 97 (229)
.|+.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ..++..++|++ +.+.++
T Consensus 30 ~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~--~~~~~~i~~~~~~~~~~~ 107 (236)
T cd03267 30 KYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRR--KKFLRRIGVVFGQKTQLW 107 (236)
T ss_pred ccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccc--hhhcccEEEEcCCccccC
Confidence 455578999999999999999999999999999999999999999999999998764321 23455789987 556778
Q ss_pred CCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q 027067 98 EKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYD 172 (229)
Q Consensus 98 ~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~ 172 (229)
+.+|+.||+.+....... ...+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+.
T Consensus 108 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~ 187 (236)
T cd03267 108 WDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVV 187 (236)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHH
Confidence 889999999775433221 123456788899988889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhcc
Q 027067 173 GVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 173 ~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~~ 207 (229)
+++.+.+++.+++++ +.|||++||+++++.+++|.
T Consensus 188 ~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~ 223 (236)
T cd03267 188 AQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARR 223 (236)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCE
Confidence 999999999998654 78999999999999887763
No 184
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=6.3e-48 Score=358.61 Aligned_cols=197 Identities=20% Similarity=0.298 Sum_probs=171.7
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC--CccEEEEcCEeCCCCchhhhhhhcc
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP--SAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
+|+++||+++|+++++|+++||+|++||+++|+||||||||||+|+|+|+++| ++|+|+++|+++.........+..+
T Consensus 1 ~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (500)
T TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGI 80 (500)
T ss_pred CEEEEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCE
Confidence 48999999999988999999999999999999999999999999999999987 7999999999986543222234579
Q ss_pred eEeecccccCCCCCHHHhHHHHHHhc------C---ccccHHHHHHHhCCChhh-cCCCCCCChhHHHHHHHHHHHhcCC
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFEVLE------G---KQGNSLPALELMGLGRLA-KEKARMLSMGQRKRLQLARLLAIDR 157 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~~~~------~---~~~~~~~~l~~~~l~~~~-~~~~~~LSgGqkqRv~lAral~~~p 157 (229)
+|++|++.+++.+|+.||+.+..... . ...++.++++.+++.+.. ++++.+|||||||||+|||||+.+|
T Consensus 81 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p 160 (500)
T TIGR02633 81 VIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQA 160 (500)
T ss_pred EEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCC
Confidence 99999998999999999998653211 0 112356789999997654 6789999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 158 PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
++|||||||++||+.+++.+.+++++++++|.|||++|||++++...+|
T Consensus 161 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d 209 (500)
T TIGR02633 161 RLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCD 209 (500)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCC
Confidence 9999999999999999999999999998889999999999999988764
No 185
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.8e-47 Score=329.73 Aligned_cols=198 Identities=24% Similarity=0.338 Sum_probs=170.0
Q ss_pred CcEEEEeEEEEeC---------CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCch
Q 027067 9 PRLLLKNVSCMRN---------AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI 79 (229)
Q Consensus 9 ~~l~l~~l~~~~~---------~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~ 79 (229)
++|+++||+++|+ ++.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.....
T Consensus 2 ~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~ 81 (268)
T PRK10419 2 TLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81 (268)
T ss_pred ceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccCh
Confidence 3799999999997 4789999999999999999999999999999999999999999999999998765322
Q ss_pred h--hhhhhcceEeeccc--ccCCCCCHHHhHHHHHHh-cC-----ccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHH
Q 027067 80 F--HQYKLQLNWLSLKD--AVKEKFTVLDNVQWFEVL-EG-----KQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQ 148 (229)
Q Consensus 80 ~--~~~~~~~~~~~~~~--~~~~~~tv~e~l~~~~~~-~~-----~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~ 148 (229)
. ...+..++|++|++ .+++..|+.+|+.+.... .. ....+.++++.+++. ...++++.+||||||||++
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~ 161 (268)
T PRK10419 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVC 161 (268)
T ss_pred hHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHH
Confidence 1 12456799999987 466778999998653221 11 112456789999996 5789999999999999999
Q ss_pred HHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 149 LARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 149 lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
|||||+.+|++|||||||++||+.+++.+.+++++++++ +.|+|++||+++++.+++|
T Consensus 162 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d 220 (268)
T PRK10419 162 LARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQ 220 (268)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCC
Confidence 999999999999999999999999999999999998764 8999999999999988765
No 186
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-47 Score=325.83 Aligned_cols=196 Identities=24% Similarity=0.366 Sum_probs=167.4
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC-----CccEEEEcCEeCCCCch-hhh
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP-----SAGEILWNGHDITQSGI-FHQ 82 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-----~~G~I~~~g~~~~~~~~-~~~ 82 (229)
++|+++||+++|+++++++++||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|.++..... ...
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~ 81 (250)
T PRK14262 2 PIIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTE 81 (250)
T ss_pred ceEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHH
Confidence 379999999999988999999999999999999999999999999999999874 89999999998754211 123
Q ss_pred hhhcceEeecccccCCCCCHHHhHHHHHHhcCc------cccHHHHHHHhCCCh----hhcCCCCCCChhHHHHHHHHHH
Q 027067 83 YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK------QGNSLPALELMGLGR----LAKEKARMLSMGQRKRLQLARL 152 (229)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~------~~~~~~~l~~~~l~~----~~~~~~~~LSgGqkqRv~lAra 152 (229)
.+..++|++|++.+++ .|++||+.+....... ...+.++++.+++.+ ..++++.+||||||||++||||
T Consensus 82 ~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~a 160 (250)
T PRK14262 82 YRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARA 160 (250)
T ss_pred hhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHH
Confidence 4567999999988887 7999999875432211 122456788888853 4788999999999999999999
Q ss_pred HhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 153 LAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 153 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|+.+|++|||||||++||+.++..+.+++.++++ +.|||++||+++++...+|
T Consensus 161 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~~~~~~~d 213 (250)
T PRK14262 161 LAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIGQAIRIAD 213 (250)
T ss_pred HhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHHhCC
Confidence 9999999999999999999999999999999865 7899999999999888765
No 187
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-47 Score=329.83 Aligned_cols=199 Identities=24% Similarity=0.302 Sum_probs=167.9
Q ss_pred CCCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC-----CccEEEEcCEeCCCCch-h
Q 027067 7 PLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP-----SAGEILWNGHDITQSGI-F 80 (229)
Q Consensus 7 ~~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-----~~G~I~~~g~~~~~~~~-~ 80 (229)
..++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++..... .
T Consensus 17 ~~~~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 17 DHSVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred CCceEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 44689999999999988999999999999999999999999999999999999863 68999999998753211 1
Q ss_pred hhhhhcceEeecccccCCCCCHHHhHHHHHHhcC----ccccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHHHH
Q 027067 81 HQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG----KQGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLARL 152 (229)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~----~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lAra 152 (229)
..++..++|++|++.+++. |+.||+.+...... ......++++.+++. +..++++.+|||||||||+||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAra 175 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARA 175 (274)
T ss_pred HHHhhcEEEEccCCccccc-cHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHH
Confidence 2345689999999888765 99999987532211 112234567777763 45688999999999999999999
Q ss_pred HhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067 153 LAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 153 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~ 207 (229)
|+.+|++|||||||++||+.+++.+.+++.++++ +.|||++||+++++.+++|.
T Consensus 176 L~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~~~~~~d~ 229 (274)
T PRK14265 176 IAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQQASRVADW 229 (274)
T ss_pred HhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCE
Confidence 9999999999999999999999999999999865 68999999999999988763
No 188
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=2e-47 Score=311.69 Aligned_cols=168 Identities=22% Similarity=0.368 Sum_probs=151.0
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
++++++|++++| +++++||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++.........+..++
T Consensus 3 ~~l~~~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (182)
T cd03215 3 PVLEVRGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIA 78 (182)
T ss_pred cEEEEeccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeE
Confidence 479999999999 8999999999999999999999999999999999999999999999998865432223456799
Q ss_pred Eeeccc---ccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCC
Q 027067 89 WLSLKD---AVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEP 165 (229)
Q Consensus 89 ~~~~~~---~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEP 165 (229)
|++|++ .+++..|+.||+.+... ||+|||||++||||++.+|++||||||
T Consensus 79 ~~~q~~~~~~~~~~~t~~e~l~~~~~---------------------------LS~G~~qrl~la~al~~~p~llllDEP 131 (182)
T cd03215 79 YVPEDRKREGLVLDLSVAENIALSSL---------------------------LSGGNQQKVVLARWLARDPRVLILDEP 131 (182)
T ss_pred EecCCcccCcccCCCcHHHHHHHHhh---------------------------cCHHHHHHHHHHHHHccCCCEEEECCC
Confidence 999984 57788899999876421 999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067 166 SVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 166 t~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~ 207 (229)
|++||+.+++.+.+++.++++++.|+|++||+++++.+.+|.
T Consensus 132 ~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~ 173 (182)
T cd03215 132 TRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDR 173 (182)
T ss_pred CcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCE
Confidence 999999999999999999877789999999999999887763
No 189
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.5e-48 Score=332.10 Aligned_cols=194 Identities=25% Similarity=0.341 Sum_probs=164.8
Q ss_pred cEEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 10 RLLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 10 ~l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... .....++
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~----~~~~~i~ 81 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQA----LQKNLVA 81 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHh----hccceEE
Confidence 699999999995 57899999999999999999999999999999999999999999999999987421 1123589
Q ss_pred EeecccccC--CCCCHHHhHHHHHH----h-c--C--ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCC
Q 027067 89 WLSLKDAVK--EKFTVLDNVQWFEV----L-E--G--KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDR 157 (229)
Q Consensus 89 ~~~~~~~~~--~~~tv~e~l~~~~~----~-~--~--~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 157 (229)
|++|++.+. ...++.+++.+... . . . ....+.++++.+++.+..++++.+||||||||++|||||+.+|
T Consensus 82 ~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p 161 (272)
T PRK15056 82 YVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQG 161 (272)
T ss_pred EeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 999987652 23467787653210 0 0 0 1123457789999998899999999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067 158 PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~ 207 (229)
++|||||||++||+.+++.+.+++.+++++|.|||++||+++++.+++|.
T Consensus 162 ~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~ 211 (272)
T PRK15056 162 QVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDY 211 (272)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE
Confidence 99999999999999999999999999887789999999999999888764
No 190
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-47 Score=331.49 Aligned_cols=198 Identities=28% Similarity=0.340 Sum_probs=167.7
Q ss_pred CCCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC-----CCccEEEEcCEeCCCCc-hh
Q 027067 7 PLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK-----PSAGEILWNGHDITQSG-IF 80 (229)
Q Consensus 7 ~~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~-----p~~G~I~~~g~~~~~~~-~~ 80 (229)
..++|+++||+++|+++++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++.... ..
T Consensus 36 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 36 GKPHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred CceEEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 3467999999999988889999999999999999999999999999999999864 49999999999875321 11
Q ss_pred hhhhhcceEeecccccCCCCCHHHhHHHHHHhcCc------cccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHH
Q 027067 81 HQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK------QGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLA 150 (229)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~------~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lA 150 (229)
...+..++|++|++.+++. |+.||+.+....... .....++++.+++. +..++++.+|||||||||+||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LA 194 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVA 194 (286)
T ss_pred HHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHH
Confidence 2345679999999888875 999999875432211 12344677788873 567889999999999999999
Q ss_pred HHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 151 RLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 151 ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|||+.+|++|||||||++||+.+++.+.++++++++ +.|||++||+++++.+++|
T Consensus 195 raL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~~~~~~~d 249 (286)
T PRK14275 195 RTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQQASRVSD 249 (286)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCC
Confidence 999999999999999999999999999999999865 6899999999999988775
No 191
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=1.9e-47 Score=321.51 Aligned_cols=194 Identities=24% Similarity=0.383 Sum_probs=169.5
Q ss_pred cEEEEeEEEEeCC----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC---CCccEEEEcCEeCCCCchhhh
Q 027067 10 RLLLKNVSCMRNA----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK---PSAGEILWNGHDITQSGIFHQ 82 (229)
Q Consensus 10 ~l~l~~l~~~~~~----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~---p~~G~I~~~g~~~~~~~~~~~ 82 (229)
.++++||+++|++ +++++|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++.. ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~----~~ 78 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP----DQ 78 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECCh----HH
Confidence 5789999999964 589999999999999999999999999999999999999 999999999998752 23
Q ss_pred hhhcceEeecccccCCCCCHHHhHHHHHHhcC----cc----ccHHH-HHHHhCCChhhcCCCCCCChhHHHHHHHHHHH
Q 027067 83 YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG----KQ----GNSLP-ALELMGLGRLAKEKARMLSMGQRKRLQLARLL 153 (229)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~----~~----~~~~~-~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral 153 (229)
++..++|++|++.+++.+|+.||+.+...... .. ....+ .++.+++.+..++.+.+|||||+|||+|||||
T Consensus 79 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral 158 (226)
T cd03234 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQL 158 (226)
T ss_pred hcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHH
Confidence 45679999999999999999999987543211 11 11233 78888998888999999999999999999999
Q ss_pred hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCh-hhHHhhhcc
Q 027067 154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLP-IQIEDAMNL 207 (229)
Q Consensus 154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~-~~~~~~~~~ 207 (229)
+.+|+++||||||++||+.++..+.+++.++++++.|+|++||++ +++.+++|.
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~ 213 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDR 213 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCE
Confidence 999999999999999999999999999999877789999999998 588888773
No 192
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-47 Score=327.63 Aligned_cols=197 Identities=26% Similarity=0.329 Sum_probs=168.7
Q ss_pred CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC-----CCccEEEEcCEeCCCCch-hh
Q 027067 8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK-----PSAGEILWNGHDITQSGI-FH 81 (229)
Q Consensus 8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~-----p~~G~I~~~g~~~~~~~~-~~ 81 (229)
.++++++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|.++..... ..
T Consensus 23 ~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~ 102 (272)
T PRK14236 23 QTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVA 102 (272)
T ss_pred CcEEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHH
Confidence 468999999999998899999999999999999999999999999999999987 489999999998854211 12
Q ss_pred hhhhcceEeecccccCCCCCHHHhHHHHHHhcCc------cccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHHH
Q 027067 82 QYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK------QGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLAR 151 (229)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~------~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lAr 151 (229)
..+..++|++|++.+++. |+.||+.+.....+. ...+.++++.+++. +..++++.+|||||||||+|||
T Consensus 103 ~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lar 181 (272)
T PRK14236 103 ELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIAR 181 (272)
T ss_pred HHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHH
Confidence 345679999999888876 999999865332211 12345677888885 3568899999999999999999
Q ss_pred HHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 152 LLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 152 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
||+.+|+++||||||+|||+.++..+.+++.++++ +.|||++||+++++.+++|
T Consensus 182 al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~~~~~~d 235 (272)
T PRK14236 182 AIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQQAARVSD 235 (272)
T ss_pred HHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHHHHHhhCC
Confidence 99999999999999999999999999999999875 7899999999999888765
No 193
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=1.4e-47 Score=327.67 Aligned_cols=184 Identities=29% Similarity=0.424 Sum_probs=162.0
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|. ..++
T Consensus 3 ~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~------------~~i~ 70 (251)
T PRK09544 3 SLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK------------LRIG 70 (251)
T ss_pred cEEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCc------------cCEE
Confidence 4899999999999889999999999999999999999999999999999999999999999761 2478
Q ss_pred EeecccccCCCC--CHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCC
Q 027067 89 WLSLKDAVKEKF--TVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPS 166 (229)
Q Consensus 89 ~~~~~~~~~~~~--tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt 166 (229)
|++|++.+++.+ ++.+++.+.. .....++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 71 ~v~q~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt 148 (251)
T PRK09544 71 YVPQKLYLDTTLPLTVNRFLRLRP--GTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPT 148 (251)
T ss_pred EeccccccccccChhHHHHHhccc--cccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 999987776653 6777654321 112234677899999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 167 VALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 167 ~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
++||+.+++.+.+++.+++++ |.|||++||+++++.+.+|
T Consensus 149 ~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d 189 (251)
T PRK09544 149 QGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTD 189 (251)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCC
Confidence 999999999999999998765 8999999999999988765
No 194
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-47 Score=328.74 Aligned_cols=197 Identities=26% Similarity=0.319 Sum_probs=168.6
Q ss_pred CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC-----CccEEEEcCEeCCCCchhhh
Q 027067 8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP-----SAGEILWNGHDITQSGIFHQ 82 (229)
Q Consensus 8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-----~~G~I~~~g~~~~~~~~~~~ 82 (229)
.++|+++||+++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|.++........
T Consensus 19 ~~~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 19 APAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred CcEEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 4689999999999999999999999999999999999999999999999999986 69999999998764321123
Q ss_pred hhhcceEeecccccCCCCCHHHhHHHHHHhcC--cc----ccHHHHHHHhCCCh----hhcCCCCCCChhHHHHHHHHHH
Q 027067 83 YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG--KQ----GNSLPALELMGLGR----LAKEKARMLSMGQRKRLQLARL 152 (229)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~--~~----~~~~~~l~~~~l~~----~~~~~~~~LSgGqkqRv~lAra 152 (229)
.+..++|++|++.+++ .|+++|+.+...... .. ....++++.+++.. ..++.+.+|||||+||++||||
T Consensus 99 ~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAra 177 (276)
T PRK14271 99 FRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLART 177 (276)
T ss_pred HhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHH
Confidence 4567999999988887 799999986532211 11 12345678888863 4678899999999999999999
Q ss_pred HhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 153 LAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 153 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|+.+|++|||||||++||+.+++.+.+++.++++ +.|||++||+++++.+++|
T Consensus 178 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~d 230 (276)
T PRK14271 178 LAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLAQAARISD 230 (276)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCC
Confidence 9999999999999999999999999999999865 5899999999999988775
No 195
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-47 Score=324.18 Aligned_cols=195 Identities=25% Similarity=0.325 Sum_probs=166.3
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC-----CccEEEEcCEeCCCCchhhhhh
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP-----SAGEILWNGHDITQSGIFHQYK 84 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-----~~G~I~~~g~~~~~~~~~~~~~ 84 (229)
+++++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|.++.........+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~ 82 (249)
T PRK14253 3 KFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLR 82 (249)
T ss_pred eEEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHH
Confidence 69999999999988999999999999999999999999999999999999986 5999999999874211112345
Q ss_pred hcceEeecccccCCCCCHHHhHHHHHHhcCc------cccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHHHHHh
Q 027067 85 LQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK------QGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLARLLA 154 (229)
Q Consensus 85 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~------~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lAral~ 154 (229)
..++|++|++.+++ .|+.||+.+....... ...+.++++.+++. +..++++.+|||||||||+|||||+
T Consensus 83 ~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 161 (249)
T PRK14253 83 IKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIA 161 (249)
T ss_pred hheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHH
Confidence 67999999988887 7999999865332211 12234567777774 4567899999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 155 IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 155 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
.+|++|||||||++||+.+++.+.+++.++++ +.|||++||+++++.+++|
T Consensus 162 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~~d 212 (249)
T PRK14253 162 MEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQQARRISD 212 (249)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHHHHHHhCC
Confidence 99999999999999999999999999999865 5899999999999998775
No 196
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=5.9e-48 Score=346.72 Aligned_cols=191 Identities=28% Similarity=0.320 Sum_probs=164.4
Q ss_pred EEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCE----eCCCCchh--hhh-hhcce
Q 027067 16 VSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGH----DITQSGIF--HQY-KLQLN 88 (229)
Q Consensus 16 l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~----~~~~~~~~--~~~-~~~~~ 88 (229)
+.++|+...+|+|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|+++|+ ++...... ... +.+++
T Consensus 30 ~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~ 109 (382)
T TIGR03415 30 ILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVS 109 (382)
T ss_pred HHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEE
Confidence 344566778999999999999999999999999999999999999999999999997 34332211 112 25799
Q ss_pred EeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEe
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLD 163 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlD 163 (229)
|++|++.+++.+|+.||+.+.....+. ...+.++++.+|+.+..++++.+|||||||||+|||||+.+|++||||
T Consensus 110 ~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlD 189 (382)
T TIGR03415 110 MVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMD 189 (382)
T ss_pred EEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 999999999999999999886533221 234567899999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 164 EPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 164 EPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
|||++||+..+..+.+.+.+++++ ++|||++|||++++.+++|
T Consensus 190 EPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~D 233 (382)
T TIGR03415 190 EPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGN 233 (382)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 999999999999999999998764 8999999999999988764
No 197
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-48 Score=357.66 Aligned_cols=194 Identities=22% Similarity=0.308 Sum_probs=170.5
Q ss_pred EEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeec
Q 027067 13 LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSL 92 (229)
Q Consensus 13 l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~ 92 (229)
++|++++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.........+..++|++|
T Consensus 1 ~~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q 80 (491)
T PRK10982 1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQ 80 (491)
T ss_pred CCceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEec
Confidence 47899999988999999999999999999999999999999999999999999999999998644322334557999999
Q ss_pred ccccCCCCCHHHhHHHHHH-hcC-------ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeC
Q 027067 93 KDAVKEKFTVLDNVQWFEV-LEG-------KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDE 164 (229)
Q Consensus 93 ~~~~~~~~tv~e~l~~~~~-~~~-------~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDE 164 (229)
++.+++.+||.||+.+... ... ...++.++++.+++....++++.+|||||||||+|||||+.+|++|||||
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDE 160 (491)
T PRK10982 81 ELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDE 160 (491)
T ss_pred ccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 9888899999999976421 111 01235678899999888899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 165 PSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 165 Pt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
||++||+.+++.+.+++.+++++|.|||++|||++++...+|
T Consensus 161 Pt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d 202 (491)
T PRK10982 161 PTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCD 202 (491)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCC
Confidence 999999999999999999998789999999999999988764
No 198
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-47 Score=323.91 Aligned_cols=196 Identities=29% Similarity=0.361 Sum_probs=165.8
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCC-----ccEEEEcCEeCCCCch-hhhh
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPS-----AGEILWNGHDITQSGI-FHQY 83 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~-----~G~I~~~g~~~~~~~~-~~~~ 83 (229)
+++++||+++|+++++++|+||+|++||+++|+||||||||||+|+|+|+++|+ +|+|+++|+++..... ...+
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T PRK14272 4 LLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAM 83 (252)
T ss_pred EEEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHh
Confidence 799999999999889999999999999999999999999999999999999874 8999999998753211 1234
Q ss_pred hhcceEeecccccCCCCCHHHhHHHHHHhcC--cc----ccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHHHHH
Q 027067 84 KLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG--KQ----GNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLARLL 153 (229)
Q Consensus 84 ~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~--~~----~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lAral 153 (229)
+..++|++|++.+++.+|+.||+.+...... .. +.+.++++.+++. +..++++.+||||||||++|||||
T Consensus 84 ~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 163 (252)
T PRK14272 84 RRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARAL 163 (252)
T ss_pred hceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHH
Confidence 5679999999999998999999986533221 11 1223345556553 456889999999999999999999
Q ss_pred hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
+.+|++|||||||++||+.+++.+.++++++++ ++|||++||+++++.+.+|
T Consensus 164 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d 215 (252)
T PRK14272 164 AVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMHQAARVSD 215 (252)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCC
Confidence 999999999999999999999999999999864 7999999999999998775
No 199
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.7e-49 Score=313.16 Aligned_cols=199 Identities=28% Similarity=0.369 Sum_probs=176.2
Q ss_pred CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCC----------
Q 027067 8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQS---------- 77 (229)
Q Consensus 8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---------- 77 (229)
.+.|+++|+.|+||...+|++||++.++|+++.|+|.|||||||+||||+=+.+|++|.|.++|+.+.-.
T Consensus 4 ~~~l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 4 ENALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred ccceehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence 3579999999999999999999999999999999999999999999999999999999999999886421
Q ss_pred --chhhhhhhcceEeecccccCCCCCHHHhHHHHHH--hcC----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHH
Q 027067 78 --GIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEV--LEG----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQL 149 (229)
Q Consensus 78 --~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~--~~~----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~l 149 (229)
...++.+.+.++++|+.+++..+||.||+.-... +.. ..++++.+|.++|+.+..+.+|..|||||+||++|
T Consensus 84 d~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aI 163 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAI 163 (256)
T ss_pred CHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHH
Confidence 1123456788999999999999999999864321 111 12346678999999999999999999999999999
Q ss_pred HHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 150 ARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 150 Aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
||||+++|+++++|||||+|||+-.-++.+.++++.++|+|.++|||.+.++.+..+
T Consensus 164 ARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss 220 (256)
T COG4598 164 ARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSS 220 (256)
T ss_pred HHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhh
Confidence 999999999999999999999999999999999999999999999999999888653
No 200
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-47 Score=325.51 Aligned_cols=197 Identities=24% Similarity=0.307 Sum_probs=168.2
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC-----CccEEEEcCEeCCCCc-hhhh
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP-----SAGEILWNGHDITQSG-IFHQ 82 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-----~~G~I~~~g~~~~~~~-~~~~ 82 (229)
++|+++||+++|+++++|+|+||+|++||+++|+|+||||||||+|+|+|+++| ++|+|+++|+++.... ....
T Consensus 6 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 85 (259)
T PRK14260 6 PAIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININR 85 (259)
T ss_pred ceEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHh
Confidence 579999999999988999999999999999999999999999999999999985 4899999999875321 1123
Q ss_pred hhhcceEeecccccCCCCCHHHhHHHHHHhcC--c----cccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHHHH
Q 027067 83 YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG--K----QGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLARL 152 (229)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~--~----~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lAra 152 (229)
.+..++|++|++.+++ .|+.||+.+...... . ...+.++++.+++. +..++++.+|||||||||+||||
T Consensus 86 ~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 164 (259)
T PRK14260 86 LRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARA 164 (259)
T ss_pred hhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHH
Confidence 4567999999988887 899999976532211 1 12345678888873 46788999999999999999999
Q ss_pred HhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067 153 LAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 153 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~ 207 (229)
|+.+|++|||||||++||+.+++.+.+++.++++ +.|||++||+++++.+++|.
T Consensus 165 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~i~~~~d~ 218 (259)
T PRK14260 165 LAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQQATRVSDF 218 (259)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCe
Confidence 9999999999999999999999999999999865 68999999999999988763
No 201
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-47 Score=327.31 Aligned_cols=197 Identities=22% Similarity=0.280 Sum_probs=166.7
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC-----CCccEEEEcCEeCCCCc-hhhh
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK-----PSAGEILWNGHDITQSG-IFHQ 82 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~-----p~~G~I~~~g~~~~~~~-~~~~ 82 (229)
++|+++||+++|+++++|+|+||+|++||+++|+|+||||||||+|+|+|+++ |++|+|+++|+++.... ....
T Consensus 9 ~~l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 88 (264)
T PRK14243 9 TVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVE 88 (264)
T ss_pred eEEEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHH
Confidence 58999999999998899999999999999999999999999999999999986 48999999999874211 1123
Q ss_pred hhhcceEeecccccCCCCCHHHhHHHHHHhcC----ccccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHHHHHh
Q 027067 83 YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG----KQGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLARLLA 154 (229)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~----~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lAral~ 154 (229)
++..++|++|++.+++ .|+.||+.+...... ....+.++++.+++. +..++++.+||||||||++|||||+
T Consensus 89 ~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~ 167 (264)
T PRK14243 89 VRRRIGMVFQKPNPFP-KSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIA 167 (264)
T ss_pred HhhhEEEEccCCcccc-ccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 4567999999988877 499999987543211 112234567777774 3567899999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067 155 IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 155 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~ 207 (229)
.+|++|||||||++||+.+++.+.+++.++++ +.|||++||+++++.+++|.
T Consensus 168 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~~~~~~~d~ 219 (264)
T PRK14243 168 VQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQQAARVSDM 219 (264)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCE
Confidence 99999999999999999999999999999865 58999999999999988763
No 202
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=4.1e-47 Score=324.97 Aligned_cols=193 Identities=21% Similarity=0.262 Sum_probs=165.8
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC----CccEEEEcCEeCCCCchhhhhhh
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP----SAGEILWNGHDITQSGIFHQYKL 85 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p----~~G~I~~~g~~~~~~~~~~~~~~ 85 (229)
+|+++||+++| ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|+++|+++... ...+.
T Consensus 4 ~l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~---~~~~~ 79 (254)
T PRK10418 4 QIELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC---ALRGR 79 (254)
T ss_pred EEEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc---ccccc
Confidence 79999999999 67899999999999999999999999999999999999999 999999999987532 11235
Q ss_pred cceEeecccc--cCCCCCHHHhHHHHHHhcC---ccccHHHHHHHhCCCh---hhcCCCCCCChhHHHHHHHHHHHhcCC
Q 027067 86 QLNWLSLKDA--VKEKFTVLDNVQWFEVLEG---KQGNSLPALELMGLGR---LAKEKARMLSMGQRKRLQLARLLAIDR 157 (229)
Q Consensus 86 ~~~~~~~~~~--~~~~~tv~e~l~~~~~~~~---~~~~~~~~l~~~~l~~---~~~~~~~~LSgGqkqRv~lAral~~~p 157 (229)
.++|++|++. +.+..|+.+++.+...... ....+.++++.+++.+ ..++++.+|||||||||+|||||+.+|
T Consensus 80 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p 159 (254)
T PRK10418 80 KIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEA 159 (254)
T ss_pred eEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCC
Confidence 6899999874 4456788888765432211 1234567899999976 578999999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 158 PIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
++|||||||++||+.+++.+.++++++.++ |.|||++||+++++.+++|
T Consensus 160 ~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d 209 (254)
T PRK10418 160 PFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLAD 209 (254)
T ss_pred CEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCC
Confidence 999999999999999999999999998654 8999999999999988765
No 203
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=1.2e-47 Score=322.37 Aligned_cols=196 Identities=23% Similarity=0.351 Sum_probs=166.1
Q ss_pred CCCcEEEEeEEEEeCC---eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhh
Q 027067 7 PLPRLLLKNVSCMRNA---QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQY 83 (229)
Q Consensus 7 ~~~~l~l~~l~~~~~~---~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~ 83 (229)
..++++++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..... ...
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~-~~~ 86 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEH-KYL 86 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCH-HHH
Confidence 4578999999999975 469999999999999999999999999999999999999999999999988754322 234
Q ss_pred hhcceEeecccccCCCCCHHHhHHHHHHhcC--------ccccHHHHHHHh--CCChhhcCCCCCCChhHHHHHHHHHHH
Q 027067 84 KLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG--------KQGNSLPALELM--GLGRLAKEKARMLSMGQRKRLQLARLL 153 (229)
Q Consensus 84 ~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~--------~~~~~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAral 153 (229)
+..++|++|++.+++ .|+.||+.+...... ......++++.+ |+....++++.+|||||||||+|||||
T Consensus 87 ~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral 165 (226)
T cd03248 87 HSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARAL 165 (226)
T ss_pred HhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHH
Confidence 567999999988776 599999975321110 011234567777 788788999999999999999999999
Q ss_pred hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
+.+|++|||||||++||+.+++.+.+++.++++ +.|+|++||++++++. +|
T Consensus 166 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~-~d 216 (226)
T cd03248 166 IRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLSTVER-AD 216 (226)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHHHHh-CC
Confidence 999999999999999999999999999999865 6899999999999864 55
No 204
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-47 Score=323.45 Aligned_cols=191 Identities=29% Similarity=0.426 Sum_probs=160.8
Q ss_pred EEEEeEEEEeCCe--eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 11 LLLKNVSCMRNAQ--QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 11 l~l~~l~~~~~~~--~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
++++|++++|+++ ++++++||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++..... ..++..++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTL-ASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCH-HHHHhhEE
Confidence 4789999999765 89999999999999999999999999999999999999999999999998754322 23456799
Q ss_pred EeecccccCCCCCHHHhHHHHHHhcCccc---------cHHHHHHHh--CCChhhcCCCCCCChhHHHHHHHHHHHhcCC
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEVLEGKQG---------NSLPALELM--GLGRLAKEKARMLSMGQRKRLQLARLLAIDR 157 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~---------~~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 157 (229)
|++|++.+++ .|++||+.++.... ... ...++++.+ ++....++++.+||+|||||++|||||+.+|
T Consensus 80 ~~~q~~~~~~-~tv~enl~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 157 (234)
T cd03251 80 LVSQDVFLFN-DTVAENIAYGRPGA-TREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDP 157 (234)
T ss_pred EeCCCCeecc-ccHHHHhhccCCCC-CHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 9999988876 69999997642211 111 122344444 5666677889999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 158 PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
+++||||||++||+.+++.+.+.+.++++ +.|||++||+++++.. +|
T Consensus 158 ~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~-~d 204 (234)
T cd03251 158 PILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLSTIEN-AD 204 (234)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHHHhh-CC
Confidence 99999999999999999999999999864 8899999999999876 55
No 205
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.9e-48 Score=358.12 Aligned_cols=197 Identities=19% Similarity=0.333 Sum_probs=169.7
Q ss_pred CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
.++|+++|+++.|+ .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.........+..+
T Consensus 263 ~~~l~~~~l~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i 340 (510)
T PRK09700 263 ETVFEVRNVTSRDR--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGM 340 (510)
T ss_pred CcEEEEeCccccCC--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCc
Confidence 35899999998764 4899999999999999999999999999999999999999999999999885433222334579
Q ss_pred eEeecc---cccCCCCCHHHhHHHHHHhc-----------C---ccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHH
Q 027067 88 NWLSLK---DAVKEKFTVLDNVQWFEVLE-----------G---KQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQL 149 (229)
Q Consensus 88 ~~~~~~---~~~~~~~tv~e~l~~~~~~~-----------~---~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~l 149 (229)
+|++|+ ..+++.+|+.||+.+..... . ....+.++++.+++. +..++++.+|||||||||+|
T Consensus 341 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~l 420 (510)
T PRK09700 341 AYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLI 420 (510)
T ss_pred EEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHH
Confidence 999997 46888899999987642110 0 012346789999996 77899999999999999999
Q ss_pred HHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 150 ARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 150 Aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
||||+.+|++|||||||++||+.+++.+.+++++++++|.|||++|||++++...+|
T Consensus 421 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d 477 (510)
T PRK09700 421 SKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCD 477 (510)
T ss_pred HHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCC
Confidence 999999999999999999999999999999999988789999999999999998775
No 206
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-47 Score=322.26 Aligned_cols=197 Identities=25% Similarity=0.336 Sum_probs=165.9
Q ss_pred CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC--C---CccEEEEcCEeCCCCch-hh
Q 027067 8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK--P---SAGEILWNGHDITQSGI-FH 81 (229)
Q Consensus 8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~--p---~~G~I~~~g~~~~~~~~-~~ 81 (229)
.++++++||+++|+++.+|+|+||+|.+||+++|+|+||||||||+++|+|+.+ | ++|+|+++|+++..... ..
T Consensus 3 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 3 KKIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred cceEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 358999999999998899999999999999999999999999999999999975 5 58999999998753111 12
Q ss_pred hhhhcceEeecccccCCCCCHHHhHHHHHHhcC--c----cccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHHH
Q 027067 82 QYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG--K----QGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLAR 151 (229)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~--~----~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lAr 151 (229)
.++..++|++|++.+++ .|+.+|+.+...... . .....+.++.+++. +..++.+.+||+||||||+|||
T Consensus 83 ~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~lar 161 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIAR 161 (252)
T ss_pred HhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHH
Confidence 34567999999988887 699999987543221 1 11234556777763 4568899999999999999999
Q ss_pred HHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 152 LLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 152 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
||+.+|++|||||||++||+.+++.+.+++.++++ +.|||++||+++++.+++|
T Consensus 162 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d 215 (252)
T PRK14255 162 VLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMHQASRISD 215 (252)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHHHHHHhCC
Confidence 99999999999999999999999999999999865 5899999999999988775
No 207
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.5e-47 Score=324.60 Aligned_cols=199 Identities=26% Similarity=0.346 Sum_probs=169.1
Q ss_pred CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCC-----ccEEEEcCEeCCCCc-hhh
Q 027067 8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPS-----AGEILWNGHDITQSG-IFH 81 (229)
Q Consensus 8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~-----~G~I~~~g~~~~~~~-~~~ 81 (229)
.++|+++|++++|++..+|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|+++.... ...
T Consensus 5 ~~~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~ 84 (261)
T PRK14258 5 IPAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLN 84 (261)
T ss_pred cceEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchH
Confidence 35799999999998888999999999999999999999999999999999999985 899999999874221 112
Q ss_pred hhhhcceEeecccccCCCCCHHHhHHHHHHhcC--c----cccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHHH
Q 027067 82 QYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG--K----QGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLAR 151 (229)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~--~----~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lAr 151 (229)
.++..++|++|++.+++ .|+.||+.+...... . ...+.++++.+++. +..++++.+|||||+||++|||
T Consensus 85 ~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lar 163 (261)
T PRK14258 85 RLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIAR 163 (261)
T ss_pred HhhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHH
Confidence 34567999999988887 899999986532211 1 12345678888874 3568899999999999999999
Q ss_pred HHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhcc
Q 027067 152 LLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 152 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~~ 207 (229)
||+.+|++|||||||++||+.+++.+.+++.++++ ++.|||++||+++++.+++|.
T Consensus 164 al~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~ 220 (261)
T PRK14258 164 ALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDF 220 (261)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCE
Confidence 99999999999999999999999999999999764 489999999999999988764
No 208
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=3.8e-47 Score=323.38 Aligned_cols=197 Identities=20% Similarity=0.253 Sum_probs=162.2
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCC--CCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS--KPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~--~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
+|+++||++.|+++++|+|+||+|++|++++|+||||||||||+++|+|++ +|++|+|+++|+++.........+..+
T Consensus 1 ~i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (248)
T PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGI 80 (248)
T ss_pred CeEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcce
Confidence 589999999999889999999999999999999999999999999999995 699999999998876543222223468
Q ss_pred eEeecccccCCCCCHHHhHHHHH-Hh---cC--------ccccHHHHHHHhCCC-hhhcCCCC-CCChhHHHHHHHHHHH
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFE-VL---EG--------KQGNSLPALELMGLG-RLAKEKAR-MLSMGQRKRLQLARLL 153 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~-~~---~~--------~~~~~~~~l~~~~l~-~~~~~~~~-~LSgGqkqRv~lAral 153 (229)
+|++|++.+++.+++.+++.... .. .. ......+.++.+++. +..++.+. +|||||||||+||||+
T Consensus 81 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral 160 (248)
T PRK09580 81 FMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMA 160 (248)
T ss_pred EEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHH
Confidence 99999988887777666543211 00 00 012234677888884 55677775 8999999999999999
Q ss_pred hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh-hc
Q 027067 154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA-MN 206 (229)
Q Consensus 154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~-~~ 206 (229)
+.+|++|||||||++||+.+++.+.++++++++.++|||++|||++.+... +|
T Consensus 161 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d 214 (248)
T PRK09580 161 VLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPD 214 (248)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCC
Confidence 999999999999999999999999999999887789999999999988875 44
No 209
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-47 Score=360.16 Aligned_cols=199 Identities=24% Similarity=0.285 Sum_probs=172.4
Q ss_pred CCcEEEEeEEEEeC-----------CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCC
Q 027067 8 LPRLLLKNVSCMRN-----------AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQ 76 (229)
Q Consensus 8 ~~~l~l~~l~~~~~-----------~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~ 76 (229)
.++|+++||++.|+ .+++|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|+|+|+++..
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~ 390 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDT 390 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCc
Confidence 36899999999996 2579999999999999999999999999999999999999999999999998865
Q ss_pred Cchh--hhhhhcceEeeccc--ccCCCCCHHHhHHHHHHhcCc------cccHHHHHHHhCCC-hhhcCCCCCCChhHHH
Q 027067 77 SGIF--HQYKLQLNWLSLKD--AVKEKFTVLDNVQWFEVLEGK------QGNSLPALELMGLG-RLAKEKARMLSMGQRK 145 (229)
Q Consensus 77 ~~~~--~~~~~~~~~~~~~~--~~~~~~tv~e~l~~~~~~~~~------~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkq 145 (229)
.... ..++.+++|++|++ .+++.+||.+|+.+....... ..++.++++.+|+. +..++++++|||||||
T Consensus 391 ~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQ 470 (623)
T PRK10261 391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQ 470 (623)
T ss_pred CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHH
Confidence 3221 12345799999986 588889999999865322211 13456789999996 6789999999999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 146 RLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 146 Rv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
||+|||||+.+|++|||||||++||+.++..+.++|++++++ |.|||+||||++++..++|
T Consensus 471 Rv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~d 532 (623)
T PRK10261 471 RICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISH 532 (623)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 999999999999999999999999999999999999998765 8999999999999988764
No 210
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.2e-47 Score=304.14 Aligned_cols=195 Identities=26% Similarity=0.366 Sum_probs=173.2
Q ss_pred cEEEEeEEEEeC----CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhh---h
Q 027067 10 RLLLKNVSCMRN----AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFH---Q 82 (229)
Q Consensus 10 ~l~l~~l~~~~~----~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~---~ 82 (229)
.|+++++++..+ .-.+|++|+|.|++||.++|+|||||||||||-+++|+..|++|+|++.|+++.+.+... -
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 799999998774 357999999999999999999999999999999999999999999999999988754322 1
Q ss_pred hhhcceEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCC
Q 027067 83 YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDR 157 (229)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 157 (229)
..++++|++|...+.|++|..||+..+..+.+. ...+.++|+.+||.+.++.+|.+|||||+|||+|||||+..|
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P 165 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRP 165 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCC
Confidence 346799999999999999999999987766541 234678999999999999999999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHH-HhCCcEEEEEeCChhhHHhh
Q 027067 158 PIWLLDEPSVALDYDGVRLLEYIIAEH-RKKGGIVIVATHLPIQIEDA 204 (229)
Q Consensus 158 ~illlDEPt~~LD~~~~~~l~~~l~~~-~~~g~tii~vtH~~~~~~~~ 204 (229)
+||+.||||-+||..+-+.+.+++-.+ ++.|.|.|+||||+.....|
T Consensus 166 ~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc 213 (228)
T COG4181 166 DVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARC 213 (228)
T ss_pred CEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhh
Confidence 999999999999999988888888776 56699999999999877665
No 211
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-47 Score=323.18 Aligned_cols=194 Identities=29% Similarity=0.368 Sum_probs=165.0
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC-----CCccEEEEcCEeCCCCch-hhhhh
Q 027067 11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK-----PSAGEILWNGHDITQSGI-FHQYK 84 (229)
Q Consensus 11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~-----p~~G~I~~~g~~~~~~~~-~~~~~ 84 (229)
-+++||+++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+.+ |++|+|+++|+++..... ....+
T Consensus 6 ~~~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 85 (251)
T PRK14244 6 ASVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLR 85 (251)
T ss_pred EEeeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHh
Confidence 478999999998899999999999999999999999999999999999986 479999999998753211 11245
Q ss_pred hcceEeecccccCCCCCHHHhHHHHHHhcCc-------cccHHHHHHHhCCCh----hhcCCCCCCChhHHHHHHHHHHH
Q 027067 85 LQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK-------QGNSLPALELMGLGR----LAKEKARMLSMGQRKRLQLARLL 153 (229)
Q Consensus 85 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-------~~~~~~~l~~~~l~~----~~~~~~~~LSgGqkqRv~lAral 153 (229)
..++|++|++.+++. |+.||+.+....... ...+.++++.+++.+ ..++.+.+|||||||||+|||||
T Consensus 86 ~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral 164 (251)
T PRK14244 86 AKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAI 164 (251)
T ss_pred hhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHH
Confidence 679999999888876 999999865322111 123456789999864 46788999999999999999999
Q ss_pred hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
+.+|++|||||||++||+.+++.+.+++.+++ ++.|||++||+++++.+++|
T Consensus 165 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~~~~~~~d 216 (251)
T PRK14244 165 AVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMKQAKKVSD 216 (251)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhcC
Confidence 99999999999999999999999999999985 48999999999999988765
No 212
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-47 Score=356.61 Aligned_cols=200 Identities=18% Similarity=0.232 Sum_probs=171.4
Q ss_pred CCcEEEEeEEEEeC---CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC-CCccEEEEcCEeCCCCchhhhh
Q 027067 8 LPRLLLKNVSCMRN---AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK-PSAGEILWNGHDITQSGIFHQY 83 (229)
Q Consensus 8 ~~~l~l~~l~~~~~---~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~-p~~G~I~~~g~~~~~~~~~~~~ 83 (229)
.++|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++.........
T Consensus 257 ~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~ 336 (506)
T PRK13549 257 EVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAI 336 (506)
T ss_pred CceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 45799999999993 4679999999999999999999999999999999999998 5999999999988643322233
Q ss_pred hhcceEeeccc---ccCCCCCHHHhHHHHH--HhcC--------ccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHH
Q 027067 84 KLQLNWLSLKD---AVKEKFTVLDNVQWFE--VLEG--------KQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQL 149 (229)
Q Consensus 84 ~~~~~~~~~~~---~~~~~~tv~e~l~~~~--~~~~--------~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~l 149 (229)
+..++|++|++ .+++.+|+.||+.+.. .... ...++.++++.+++. +..++++.+|||||||||+|
T Consensus 337 ~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~l 416 (506)
T PRK13549 337 AQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVL 416 (506)
T ss_pred HCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHH
Confidence 45799999985 4778899999997642 1110 112356789999996 57899999999999999999
Q ss_pred HHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067 150 ARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 150 Aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~ 207 (229)
||||+.+|++|||||||+|||+.+++.+.+++.+++++|+|||++|||++++.+++|.
T Consensus 417 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~ 474 (506)
T PRK13549 417 AKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDR 474 (506)
T ss_pred HHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCE
Confidence 9999999999999999999999999999999999988899999999999999988753
No 213
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.4e-47 Score=347.85 Aligned_cols=200 Identities=24% Similarity=0.329 Sum_probs=182.5
Q ss_pred CCCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067 7 PLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ 86 (229)
Q Consensus 7 ~~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 86 (229)
..+.++++|++|+|++.++|++|||++.+||++||+|+||||||||+|+|+|.++|++|+|+++|+.....++.......
T Consensus 5 ~~~ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 5 TPPLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred ccceeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 44689999999999999999999999999999999999999999999999999999999999999999877776667789
Q ss_pred ceEeecccccCCCCCHHHhHHHHHHhcC---------ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCC
Q 027067 87 LNWLSLKDAVKEKFTVLDNVQWFEVLEG---------KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDR 157 (229)
Q Consensus 87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~---------~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 157 (229)
|..++|+.++.+++||.||+.++..... ...++.++|+.+++....+.++.+||.||||.|+||||+..++
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~a 164 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDA 164 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999976543221 1234667889999854489999999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 158 PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
++||||||||+|+....+.+.+++++++++|.+||+|||.++++.+.+|
T Consensus 165 rllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~D 213 (500)
T COG1129 165 RVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIAD 213 (500)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999884
No 214
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=2.5e-47 Score=322.68 Aligned_cols=191 Identities=23% Similarity=0.366 Sum_probs=158.3
Q ss_pred EEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 11 LLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 11 l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
++++|++++|++ +++|+++||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++..... ..++..++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~-~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADP-AWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCH-HHHhhcEE
Confidence 478999999963 679999999999999999999999999999999999999999999999998754332 23456799
Q ss_pred EeecccccCCCCCHHHhHHHHHHhcCccccH---------HHHHHHh--CCChhhcCCCCCCChhHHHHHHHHHHHhcCC
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEVLEGKQGNS---------LPALELM--GLGRLAKEKARMLSMGQRKRLQLARLLAIDR 157 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~---------~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 157 (229)
|++|++.+++ .|+.||+.+.... ...... .++++.+ ++....++++.+|||||||||+|||||+.+|
T Consensus 80 ~~~q~~~~~~-~tv~~nl~~~~~~-~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p 157 (237)
T cd03252 80 VVLQENVLFN-RSIRDNIALADPG-MSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNP 157 (237)
T ss_pred EEcCCchhcc-chHHHHhhccCCC-CCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCC
Confidence 9999988765 6999999763211 011111 2233333 4555567889999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 158 PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
++|||||||++||+.+++.+.+++.++++ |.|||++||+++++.. +|
T Consensus 158 ~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~-~d 204 (237)
T cd03252 158 RILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLSTVKN-AD 204 (237)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHHh-CC
Confidence 99999999999999999999999999864 8999999999999864 54
No 215
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.7e-48 Score=330.43 Aligned_cols=196 Identities=29% Similarity=0.342 Sum_probs=171.9
Q ss_pred cEEEEeEEEEeCCe------------------------eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCcc
Q 027067 10 RLLLKNVSCMRNAQ------------------------QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAG 65 (229)
Q Consensus 10 ~l~l~~l~~~~~~~------------------------~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G 65 (229)
.++++||+|-||.+ .-++|+||+|+.|||+.|+|-||||||||+|+++++++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 58999999988632 257999999999999999999999999999999999999999
Q ss_pred EEEEcCEeCCCCchh---hhhhhcceEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCC
Q 027067 66 EILWNGHDITQSGIF---HQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKAR 137 (229)
Q Consensus 66 ~I~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~ 137 (229)
+|.++|+++...+.. .-.++++++++|+..++|+.||.||..|+....+. ++++.++++.+||..+.+++|+
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~ 163 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN 163 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcc
Confidence 999999998775532 22456799999999999999999999998765442 3456789999999999999999
Q ss_pred CCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhh
Q 027067 138 MLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAM 205 (229)
Q Consensus 138 ~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~ 205 (229)
+|||||||||.|||||+.+|+|||||||||+|||--+..+.+-+.++.+ -++|||+||||++++-.+.
T Consensus 164 eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 164 ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred cccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 9999999999999999999999999999999999888777776666644 4889999999999987764
No 216
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-46 Score=321.78 Aligned_cols=196 Identities=29% Similarity=0.372 Sum_probs=166.6
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC--C---CccEEEEcCEeCCCCc-hhhh
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK--P---SAGEILWNGHDITQSG-IFHQ 82 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~--p---~~G~I~~~g~~~~~~~-~~~~ 82 (229)
++|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+.+ | ++|+|.++|+++...+ ....
T Consensus 5 ~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 84 (253)
T PRK14261 5 IILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVA 84 (253)
T ss_pred ceEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhh
Confidence 48999999999999999999999999999999999999999999999999976 3 4899999999886431 1123
Q ss_pred hhhcceEeecccccCCCCCHHHhHHHHHHhcCc------cccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHHHH
Q 027067 83 YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK------QGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLARL 152 (229)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~------~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lAra 152 (229)
.+..++|++|++.+++. |++||+.+....... ...+.++++.+++. +..++.+.+||+|||||++||||
T Consensus 85 ~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 163 (253)
T PRK14261 85 LRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIART 163 (253)
T ss_pred hhceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHH
Confidence 45679999999988875 999999875433211 12344567777774 34688999999999999999999
Q ss_pred HhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 153 LAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 153 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
++.+|+++||||||+|||+.+++.+.+++.++++ +.|||++||+++++.+.+|
T Consensus 164 l~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~~~~~~~d 216 (253)
T PRK14261 164 LAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQQAARVSD 216 (253)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHHHHHhhCC
Confidence 9999999999999999999999999999999865 5899999999999988765
No 217
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-47 Score=321.18 Aligned_cols=192 Identities=23% Similarity=0.393 Sum_probs=159.6
Q ss_pred cEEEEeEEEEeCC-eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 10 RLLLKNVSCMRNA-QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 10 ~l~l~~l~~~~~~-~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
.|+++|++++|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..... ...+..++
T Consensus 2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~-~~~~~~i~ 80 (229)
T cd03254 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISR-KSLRSMIG 80 (229)
T ss_pred eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCH-HHHhhhEE
Confidence 4789999999975 579999999999999999999999999999999999999999999999998754321 23456799
Q ss_pred EeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHh-----------CCChhhcCCCCCCChhHHHHHHHHHHHhcCC
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELM-----------GLGRLAKEKARMLSMGQRKRLQLARLLAIDR 157 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 157 (229)
|++|++.+++. |+.||+.++.... ...+..++++.+ ++....++++.+|||||||||+|||||+.+|
T Consensus 81 ~~~q~~~~~~~-tv~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p 158 (229)
T cd03254 81 VVLQDTFLFSG-TIMENIRLGRPNA-TDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP 158 (229)
T ss_pred EecCCchhhhh-HHHHHHhccCCCC-CHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999888775 9999997642211 112233334444 3444456678999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 158 PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
++|||||||++||+.+++.+.+++..++ ++.|||++||+++++.. +|
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~-~d 205 (229)
T cd03254 159 KILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLSTIKN-AD 205 (229)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHhh-CC
Confidence 9999999999999999999999999985 48999999999998864 54
No 218
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=3.8e-47 Score=309.52 Aligned_cols=166 Identities=34% Similarity=0.499 Sum_probs=147.8
Q ss_pred EEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEee
Q 027067 12 LLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLS 91 (229)
Q Consensus 12 ~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~ 91 (229)
+++||+++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..... ..++..++|++
T Consensus 1 ~~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~-~~~~~~i~~~~ 79 (180)
T cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSP-KELARKIAYVP 79 (180)
T ss_pred CeeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCH-HHHHHHHhHHH
Confidence 47899999998889999999999999999999999999999999999999999999999998864332 12333455555
Q ss_pred cccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q 027067 92 LKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDY 171 (229)
Q Consensus 92 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~ 171 (229)
| +++.+++.+..++++.+||+|||||++|||||+.+|+++||||||++||+
T Consensus 80 q-----------------------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~ 130 (180)
T cd03214 80 Q-----------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDI 130 (180)
T ss_pred H-----------------------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 4 67788888888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhcc
Q 027067 172 DGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 172 ~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~~ 207 (229)
.+++.+.+++.+++++ +.|+|++||+++++.+.+|.
T Consensus 131 ~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~ 167 (180)
T cd03214 131 AHQIELLELLRRLARERGKTVVMVLHDLNLAARYADR 167 (180)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 9999999999998776 88999999999999887763
No 219
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-47 Score=308.82 Aligned_cols=190 Identities=29% Similarity=0.394 Sum_probs=171.1
Q ss_pred CcEEEEeEEEEeCCee--eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067 9 PRLLLKNVSCMRNAQQ--ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ 86 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~--iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 86 (229)
+++.+++++.+|++++ +|+|+|++|.+||.++++||||||||||||+++|+.+|+.|+|.++|+.++..+. .
T Consensus 2 ~~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga------e 75 (259)
T COG4525 2 CMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA------E 75 (259)
T ss_pred ceeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc------c
Confidence 3688999999998877 9999999999999999999999999999999999999999999999999986432 2
Q ss_pred ceEeecccccCCCCCHHHhHHHHHHhcCcc-----ccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEE
Q 027067 87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQ-----GNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWL 161 (229)
Q Consensus 87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ill 161 (229)
-+.++|++.++|.+++.||+.|+..+.+.. +.+.+.+..+||.+..++++-+|||||||||.|||||+.+|++|+
T Consensus 76 rgvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~Ll 155 (259)
T COG4525 76 RGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLL 155 (259)
T ss_pred ceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEe
Confidence 478999999999999999999988776532 235577899999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHH-HHhCCcEEEEEeCChhhHHhh
Q 027067 162 LDEPSVALDYDGVRLLEYIIAE-HRKKGGIVIVATHLPIQIEDA 204 (229)
Q Consensus 162 lDEPt~~LD~~~~~~l~~~l~~-~~~~g~tii~vtH~~~~~~~~ 204 (229)
||||+++||.-+++.+.+++-+ +++.|+.+++||||+++.--.
T Consensus 156 LDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlfl 199 (259)
T COG4525 156 LDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFL 199 (259)
T ss_pred ecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhh
Confidence 9999999999999999987776 577899999999998876554
No 220
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-46 Score=322.48 Aligned_cols=200 Identities=24% Similarity=0.343 Sum_probs=169.8
Q ss_pred CCCCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcC------EeCCCCch
Q 027067 6 PPLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNG------HDITQSGI 79 (229)
Q Consensus 6 ~~~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g------~~~~~~~~ 79 (229)
...|+++++|++++|+++.+|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++| .++.....
T Consensus 6 ~~~~~i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~ 85 (257)
T PRK14246 6 SAEDVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDA 85 (257)
T ss_pred hhhhheeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCH
Confidence 456899999999999999999999999999999999999999999999999999999997777666 34432221
Q ss_pred hhhhhhcceEeecccccCCCCCHHHhHHHHHHhcC--cc----ccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHH
Q 027067 80 FHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG--KQ----GNSLPALELMGLG----RLAKEKARMLSMGQRKRLQL 149 (229)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~--~~----~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~l 149 (229)
...+..++|++|++.+++.+|++||+.+...... .. ..+.++++.+++. +..++.+..||+|||||++|
T Consensus 86 -~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~l 164 (257)
T PRK14246 86 -IKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTI 164 (257)
T ss_pred -HHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHH
Confidence 2345679999999999988999999987543211 11 2345678888985 45688999999999999999
Q ss_pred HHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067 150 ARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 150 Aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~ 207 (229)
||||+.+|+++||||||++||+.+++.+.+++.++++ +.|||++||+++++..+++.
T Consensus 165 aral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~~~~~~~d~ 221 (257)
T PRK14246 165 ARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQQVARVADY 221 (257)
T ss_pred HHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHHHHHHhCCE
Confidence 9999999999999999999999999999999998864 68999999999999887753
No 221
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.5e-47 Score=359.62 Aligned_cols=200 Identities=20% Similarity=0.216 Sum_probs=169.1
Q ss_pred CCCcEEEEeEEEEeC----CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCC------
Q 027067 7 PLPRLLLKNVSCMRN----AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQ------ 76 (229)
Q Consensus 7 ~~~~l~l~~l~~~~~----~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~------ 76 (229)
..++|+++||++.|+ ..++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|..+..
T Consensus 9 ~~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~ 88 (623)
T PRK10261 9 ARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVI 88 (623)
T ss_pred CCceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccc
Confidence 346899999999996 3579999999999999999999999999999999999999999999999875421
Q ss_pred ----Cchh--hhh-hhcceEeeccc--ccCCCCCHHHhHHHHHHhc-C-----ccccHHHHHHHhCCC---hhhcCCCCC
Q 027067 77 ----SGIF--HQY-KLQLNWLSLKD--AVKEKFTVLDNVQWFEVLE-G-----KQGNSLPALELMGLG---RLAKEKARM 138 (229)
Q Consensus 77 ----~~~~--~~~-~~~~~~~~~~~--~~~~~~tv~e~l~~~~~~~-~-----~~~~~~~~l~~~~l~---~~~~~~~~~ 138 (229)
.... ... ...++|++|++ .+++.+||.||+.+..... . ...++.++++.+|+. ...++++++
T Consensus 89 ~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~ 168 (623)
T PRK10261 89 ELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQ 168 (623)
T ss_pred ccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCcc
Confidence 1111 112 23699999987 6788899999998754321 1 113456789999995 357999999
Q ss_pred CChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 139 LSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 139 LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
|||||||||+|||||+.+|++|||||||++||+.+++.+.+++++++++ |+|||+||||++++...+|
T Consensus 169 LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~ad 237 (623)
T PRK10261 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIAD 237 (623)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999998754 8999999999999988763
No 222
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-46 Score=328.85 Aligned_cols=199 Identities=27% Similarity=0.341 Sum_probs=169.0
Q ss_pred CCCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC-----CCccEEEEcCEeCCCCch-h
Q 027067 7 PLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK-----PSAGEILWNGHDITQSGI-F 80 (229)
Q Consensus 7 ~~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~-----p~~G~I~~~g~~~~~~~~-~ 80 (229)
..++|+++||+++|+++.+|+++||+|.+||+++|+|+||||||||+++|+|+++ |++|+|+++|.++..... .
T Consensus 42 ~~~~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~ 121 (305)
T PRK14264 42 GDAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL 121 (305)
T ss_pred CCceEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccH
Confidence 3457999999999998999999999999999999999999999999999999986 689999999998754211 1
Q ss_pred hhhhhcceEeecccccCCCCCHHHhHHHHHHhcC------------------ccccHHHHHHHhCCC----hhhcCCCCC
Q 027067 81 HQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG------------------KQGNSLPALELMGLG----RLAKEKARM 138 (229)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~------------------~~~~~~~~l~~~~l~----~~~~~~~~~ 138 (229)
...+..++|++|++.+++. |++||+.+...... ....+.++++.+++. +..++++.+
T Consensus 122 ~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 200 (305)
T PRK14264 122 VELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALG 200 (305)
T ss_pred HHHhhceEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCcccc
Confidence 2345679999999887774 99999986532110 012245677888874 456889999
Q ss_pred CChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067 139 LSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 139 LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~ 207 (229)
|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+++++ +.|||++||+++.+.+++|.
T Consensus 201 LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~i~~~~d~ 268 (305)
T PRK14264 201 LSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQQAARISDQ 268 (305)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhcCE
Confidence 999999999999999999999999999999999999999999999876 48999999999999988874
No 223
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=3.8e-47 Score=319.71 Aligned_cols=183 Identities=26% Similarity=0.296 Sum_probs=158.9
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067 11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL 90 (229)
Q Consensus 11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~ 90 (229)
+.++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ..
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~------~~----- 91 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL------GL----- 91 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh------cc-----
Confidence 7889999999999999999999999999999999999999999999999999999999999875311 00
Q ss_pred ecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCC
Q 027067 91 SLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEP 165 (229)
Q Consensus 91 ~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEP 165 (229)
...+.+.+|+.||+.+....... .....++++.+++.+..++++.+||||||||++||||++.+|+++|||||
T Consensus 92 --~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP 169 (224)
T cd03220 92 --GGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEV 169 (224)
T ss_pred --cccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 12234668999999875432211 12345678889998889999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 166 SVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 166 t~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|++||+.+++.+.+.+.+++++|.|||++||+++++..++|
T Consensus 170 ~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d 210 (224)
T cd03220 170 LAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCD 210 (224)
T ss_pred cccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999987778999999999999988776
No 224
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=3.2e-47 Score=353.07 Aligned_cols=193 Identities=20% Similarity=0.225 Sum_probs=166.7
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW 89 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 89 (229)
+|+++|++++|+++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++..... ...+..++|
T Consensus 3 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~-~~~~~~i~~ 81 (490)
T PRK10938 3 SLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSF-EQLQKLVSD 81 (490)
T ss_pred eEEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCH-HHHHHHhce
Confidence 6999999999998889999999999999999999999999999999999999999999999987654322 223456899
Q ss_pred eeccccc--C------CCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEE
Q 027067 90 LSLKDAV--K------EKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWL 161 (229)
Q Consensus 90 ~~~~~~~--~------~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ill 161 (229)
++|++.+ + ..+++.+++.+.. ....++.++++.+++.+..++++.+|||||||||+||+||+.+|++||
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 158 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQDEV---KDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLI 158 (490)
T ss_pred eccCcchhhcccchhhccccHHHhcccch---hHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9987542 1 1467888765321 112346788999999988999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 162 LDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 162 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|||||++||+.+++.+.+++.+++++|.|||++||+++++.+.+|
T Consensus 159 LDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d 203 (490)
T PRK10938 159 LDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQ 203 (490)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCC
Confidence 999999999999999999999998778999999999999988764
No 225
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=4.8e-47 Score=321.09 Aligned_cols=191 Identities=29% Similarity=0.432 Sum_probs=157.8
Q ss_pred EEEEeEEEEeCC---eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 11 LLLKNVSCMRNA---QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 11 l~l~~l~~~~~~---~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..... ..++..+
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~-~~~~~~i 79 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNL-RWLRSQI 79 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCH-HHHHhhE
Confidence 478999999964 469999999999999999999999999999999999999999999999998754332 2334579
Q ss_pred eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHH---------Hh--CCChhhcCCCCCCChhHHHHHHHHHHHhcC
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALE---------LM--GLGRLAKEKARMLSMGQRKRLQLARLLAID 156 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~---------~~--~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 156 (229)
+|++|++.+++ .|+.||+.+..... ......+.++ .+ ++....++++.+|||||||||+|||||+.+
T Consensus 80 ~~~~q~~~~~~-~tv~e~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~ 157 (238)
T cd03249 80 GLVSQEPVLFD-GTIAENIRYGKPDA-TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRN 157 (238)
T ss_pred EEECCchhhhh-hhHHHHhhccCCCC-CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcC
Confidence 99999988776 59999997642211 1111222222 22 444456778899999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|++|||||||++||+.+++.+.+++.+++ +|.|||++||++++++ .+|
T Consensus 158 p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~-~~d 205 (238)
T cd03249 158 PKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIR-NAD 205 (238)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHh-hCC
Confidence 99999999999999999999999999987 7899999999999987 565
No 226
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=1.1e-46 Score=305.04 Aligned_cols=161 Identities=35% Similarity=0.545 Sum_probs=145.3
Q ss_pred EEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 11 LLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 11 l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
++++|++++|++ +++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..... ..++..++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~-~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDP-NELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCH-HHHHhheE
Confidence 478999999975 569999999999999999999999999999999999999999999999998865432 23456799
Q ss_pred EeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVA 168 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~ 168 (229)
|++|++.+++. |+.||+ ||||||||++|||||+.+|++|||||||++
T Consensus 80 ~~~q~~~~~~~-tv~~~l--------------------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~ 126 (173)
T cd03246 80 YLPQDDELFSG-SIAENI--------------------------------LSGGQRQRLGLARALYGNPRILVLDEPNSH 126 (173)
T ss_pred EECCCCccccC-cHHHHC--------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCccc
Confidence 99999887774 998886 999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 169 LDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 169 LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
||+.+++.+.+++++++++|.|||++||+++.++ .+|
T Consensus 127 LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~~d 163 (173)
T cd03246 127 LDVEGERALNQAIAALKAAGATRIVIAHRPETLA-SAD 163 (173)
T ss_pred cCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCC
Confidence 9999999999999998777899999999998874 455
No 227
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=1.4e-46 Score=309.75 Aligned_cols=170 Identities=26% Similarity=0.442 Sum_probs=152.8
Q ss_pred CcEEEEeEEEEeCC------eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCC--CCCccEEEEcCEeCCCCchh
Q 027067 9 PRLLLKNVSCMRNA------QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS--KPSAGEILWNGHDITQSGIF 80 (229)
Q Consensus 9 ~~l~l~~l~~~~~~------~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~--~p~~G~I~~~g~~~~~~~~~ 80 (229)
+.++++||+++|++ +++++++||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|+++...
T Consensus 2 ~~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~--- 78 (194)
T cd03213 2 VTLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKR--- 78 (194)
T ss_pred cEEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchH---
Confidence 35899999999975 68999999999999999999999999999999999999 99999999999988641
Q ss_pred hhhhhcceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeE
Q 027067 81 HQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIW 160 (229)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~il 160 (229)
..+..++|++|++.+++.+|+.||+.+.... .+|||||+||++|||||+.+|+++
T Consensus 79 -~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~------------------------~~LS~G~~qrv~laral~~~p~il 133 (194)
T cd03213 79 -SFRKIIGYVPQDDILHPTLTVRETLMFAAKL------------------------RGLSGGERKRVSIALELVSNPSLL 133 (194)
T ss_pred -hhhheEEEccCcccCCCCCcHHHHHHHHHHh------------------------ccCCHHHHHHHHHHHHHHcCCCEE
Confidence 3456799999999888889999998754211 099999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChh-hHHhhhc
Q 027067 161 LLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPI-QIEDAMN 206 (229)
Q Consensus 161 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~~ 206 (229)
||||||++||+.+++.+.+++.+++++|.|+|++||+++ ++.+++|
T Consensus 134 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d 180 (194)
T cd03213 134 FLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFD 180 (194)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcC
Confidence 999999999999999999999998777999999999996 6777666
No 228
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.2e-47 Score=319.13 Aligned_cols=191 Identities=27% Similarity=0.404 Sum_probs=158.8
Q ss_pred EEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067 11 LLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW 89 (229)
Q Consensus 11 l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 89 (229)
++++|++++|+ ++.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..... ..++..++|
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~-~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTL-DSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCH-HHHHhhEEE
Confidence 47899999996 5779999999999999999999999999999999999999999999999998865332 234567999
Q ss_pred eecccccCCCCCHHHhHHHHHHhcCccccHHHHH---------HHh--CCChhhcCCCCCCChhHHHHHHHHHHHhcCCC
Q 027067 90 LSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPAL---------ELM--GLGRLAKEKARMLSMGQRKRLQLARLLAIDRP 158 (229)
Q Consensus 90 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l---------~~~--~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 158 (229)
++|++.+++ .|+.||+.+.... .......+.+ ..+ ++....++++.+|||||||||+|||||+.+|+
T Consensus 80 ~~q~~~~~~-~tv~~nl~~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ 157 (236)
T cd03253 80 VPQDTVLFN-DTIGYNIRYGRPD-ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPP 157 (236)
T ss_pred ECCCChhhc-chHHHHHhhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 999988875 6999999764211 1111122222 222 44445667789999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 159 IWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 159 illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
+|||||||++||+.+++.+.+++.++++ |.|||++||+++++.. +|
T Consensus 158 llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~-~d 203 (236)
T cd03253 158 ILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLSTIVN-AD 203 (236)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHh-CC
Confidence 9999999999999999999999999876 8999999999999865 54
No 229
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=4.7e-47 Score=352.76 Aligned_cols=198 Identities=17% Similarity=0.228 Sum_probs=170.6
Q ss_pred CcEEEEeEEEEe---CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC-CccEEEEcCEeCCCCchhhhhh
Q 027067 9 PRLLLKNVSCMR---NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP-SAGEILWNGHDITQSGIFHQYK 84 (229)
Q Consensus 9 ~~l~l~~l~~~~---~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-~~G~I~~~g~~~~~~~~~~~~~ 84 (229)
++|+++|++++| +++++|+++||+|.+||+++|+||||||||||+|+|+|+++| ++|+|+++|+++.........+
T Consensus 256 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~ 335 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIR 335 (500)
T ss_pred ceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHh
Confidence 479999999999 356799999999999999999999999999999999999995 8999999999885432222345
Q ss_pred hcceEeeccc---ccCCCCCHHHhHHHHHH--hc---C-c----cccHHHHHHHhCCCh-hhcCCCCCCChhHHHHHHHH
Q 027067 85 LQLNWLSLKD---AVKEKFTVLDNVQWFEV--LE---G-K----QGNSLPALELMGLGR-LAKEKARMLSMGQRKRLQLA 150 (229)
Q Consensus 85 ~~~~~~~~~~---~~~~~~tv~e~l~~~~~--~~---~-~----~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lA 150 (229)
.+++|++|+. .+++.+|+.+|+.+... .. . . ...+.++++.+++.. ..++++.+|||||||||+||
T Consensus 336 ~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la 415 (500)
T TIGR02633 336 AGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLA 415 (500)
T ss_pred CCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHH
Confidence 6799999985 57888999999876421 11 0 1 123567899999964 67999999999999999999
Q ss_pred HHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 151 RLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 151 ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|||+.+|++|||||||++||+.+++.+.+++.+++++|.|||++|||++++.+++|
T Consensus 416 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d 471 (500)
T TIGR02633 416 KMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSD 471 (500)
T ss_pred HHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCC
Confidence 99999999999999999999999999999999998889999999999999998875
No 230
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-46 Score=320.61 Aligned_cols=198 Identities=24% Similarity=0.238 Sum_probs=169.1
Q ss_pred CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC-----CccEEEEcCEeCCCCch-hh
Q 027067 8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP-----SAGEILWNGHDITQSGI-FH 81 (229)
Q Consensus 8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-----~~G~I~~~g~~~~~~~~-~~ 81 (229)
.+.+.+++++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|+++|+++..... ..
T Consensus 6 ~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 6 PIVMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred CceEEEEeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 3579999999999999999999999999999999999999999999999999986 79999999998753211 12
Q ss_pred hhhhcceEeecccccCCCCCHHHhHHHHHHhcC----ccccHHHHHHHhCCCh----hhcCCCCCCChhHHHHHHHHHHH
Q 027067 82 QYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG----KQGNSLPALELMGLGR----LAKEKARMLSMGQRKRLQLARLL 153 (229)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~----~~~~~~~~l~~~~l~~----~~~~~~~~LSgGqkqRv~lAral 153 (229)
.++..++|++|++.++ .+|+.||+.+...... ....+.++++.+++.+ ..++++.+|||||+||++|||||
T Consensus 86 ~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral 164 (261)
T PRK14263 86 VVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAI 164 (261)
T ss_pred hhhhceEEEecCCccc-cccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHH
Confidence 3456799999998877 5899999987543211 1234567888888853 34678899999999999999999
Q ss_pred hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067 154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~ 207 (229)
+.+|++|||||||+|||+.+++.+.+++.++++ +.|+|++||+++++.+++|.
T Consensus 165 ~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~~tii~isH~~~~i~~~~d~ 217 (261)
T PRK14263 165 ATEPEVLLLDEPCSALDPIATRRVEELMVELKK-DYTIALVTHNMQQAIRVADT 217 (261)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCE
Confidence 999999999999999999999999999999854 78999999999999887764
No 231
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.4e-46 Score=351.22 Aligned_cols=196 Identities=28% Similarity=0.440 Sum_probs=166.2
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCC--CCCccEEEEc------------------
Q 027067 11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS--KPSAGEILWN------------------ 70 (229)
Q Consensus 11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~--~p~~G~I~~~------------------ 70 (229)
|+++|++++|+++++|+++||+|++||+++|+||||||||||+|+|+|++ +|++|+|+++
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~ 80 (520)
T TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGE 80 (520)
T ss_pred CEEEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccc
Confidence 57899999999889999999999999999999999999999999999997 7999999997
Q ss_pred -----CEeCC-------CCc--hhhhhhhcceEeecc-cccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCCh
Q 027067 71 -----GHDIT-------QSG--IFHQYKLQLNWLSLK-DAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGR 130 (229)
Q Consensus 71 -----g~~~~-------~~~--~~~~~~~~~~~~~~~-~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~ 130 (229)
|.++. ... .....+..++|++|+ +.+++.+|+.||+.+....... ..++.++++.+|+.+
T Consensus 81 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 160 (520)
T TIGR03269 81 PCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSH 160 (520)
T ss_pred ccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh
Confidence 22221 000 011234568999997 6788889999999875432211 234567899999998
Q ss_pred hhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067 131 LAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 131 ~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~ 206 (229)
..++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++++++.+ .|.|||+||||++.+.+.+|
T Consensus 161 ~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d 237 (520)
T TIGR03269 161 RITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSD 237 (520)
T ss_pred hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcC
Confidence 88999999999999999999999999999999999999999999999999999855 48999999999999988775
No 232
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-46 Score=320.59 Aligned_cols=198 Identities=25% Similarity=0.318 Sum_probs=167.0
Q ss_pred CCCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC-----CccEEEEcCEeCCCCc---
Q 027067 7 PLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP-----SAGEILWNGHDITQSG--- 78 (229)
Q Consensus 7 ~~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-----~~G~I~~~g~~~~~~~--- 78 (229)
..++|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|+++|.++....
T Consensus 13 ~~~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~ 92 (265)
T PRK14252 13 TQQKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEV 92 (265)
T ss_pred CCceEEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccccc
Confidence 34689999999999988999999999999999999999999999999999999875 7999999998764210
Q ss_pred hhhhhhhcceEeecccccCCCCCHHHhHHHHHHhcC------ccccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHH
Q 027067 79 IFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG------KQGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQ 148 (229)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~------~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~ 148 (229)
.....+..++|++|++.+++. |+.||+.+.....+ ..+...++++.+++. +..++.+.+|||||+|||+
T Consensus 93 ~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 171 (265)
T PRK14252 93 DPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLC 171 (265)
T ss_pred CHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHH
Confidence 012345678999999888876 99999986532211 112345667777763 4568899999999999999
Q ss_pred HHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 149 LARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 149 lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|||||+.+|+++||||||++||+.+++.+.+++.++++ +.|||++||+++++.+++|
T Consensus 172 laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~~~~~~~d 228 (265)
T PRK14252 172 IARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQQAARVSD 228 (265)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHHHHHHhCC
Confidence 99999999999999999999999999999999999865 6899999999999988775
No 233
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.7e-46 Score=351.34 Aligned_cols=198 Identities=20% Similarity=0.280 Sum_probs=170.1
Q ss_pred CCcEEEEeEEEEeC-----------CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCC
Q 027067 8 LPRLLLKNVSCMRN-----------AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQ 76 (229)
Q Consensus 8 ~~~l~l~~l~~~~~-----------~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~ 76 (229)
.++|+++||+++|+ ++++|+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|+++|+++..
T Consensus 273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~ 351 (529)
T PRK15134 273 SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHN 351 (529)
T ss_pred CCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccc
Confidence 45899999999995 3679999999999999999999999999999999999985 89999999998864
Q ss_pred Cchh--hhhhhcceEeeccc--ccCCCCCHHHhHHHHHHhcC-------ccccHHHHHHHhCCC-hhhcCCCCCCChhHH
Q 027067 77 SGIF--HQYKLQLNWLSLKD--AVKEKFTVLDNVQWFEVLEG-------KQGNSLPALELMGLG-RLAKEKARMLSMGQR 144 (229)
Q Consensus 77 ~~~~--~~~~~~~~~~~~~~--~~~~~~tv~e~l~~~~~~~~-------~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqk 144 (229)
.... ..++..++|++|++ .+++.+||.||+.+...... ....+.++++.+++. +..++++.+||||||
T Consensus 352 ~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~ 431 (529)
T PRK15134 352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQR 431 (529)
T ss_pred cchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHH
Confidence 3221 12345789999986 47888999999987532211 112456789999997 578999999999999
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 145 KRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 145 qRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
|||+|||||+.+|++|||||||++||+.+++.+.+++++++++ |.|||+||||++++.+.+|
T Consensus 432 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d 494 (529)
T PRK15134 432 QRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCH 494 (529)
T ss_pred HHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcC
Confidence 9999999999999999999999999999999999999998765 8999999999999998775
No 234
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=6.5e-47 Score=340.12 Aligned_cols=198 Identities=22% Similarity=0.298 Sum_probs=183.7
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
+.+++++++|+|++..++++|||+|.+||+.||+|+||||||||+++|.|+++|++|+|+++|+.+...++....+.+|+
T Consensus 3 ~~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIG 82 (501)
T COG3845 3 PALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIG 82 (501)
T ss_pred ceEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCc
Confidence 47999999999999999999999999999999999999999999999999999999999999999988777777888999
Q ss_pred EeecccccCCCCCHHHhHHHHHHhc--------CccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeE
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEVLE--------GKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIW 160 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~~~--------~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~il 160 (229)
+++|+..+++.+||.||+.++.... ....++.++.+++||.-..++++.+||-||||||.|.+||.++|++|
T Consensus 83 MVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iL 162 (501)
T COG3845 83 MVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLL 162 (501)
T ss_pred EEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEE
Confidence 9999999999999999998764321 11234667888999988889999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 161 LLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 161 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
||||||+-|-|...+.+.+.++.++++|+|||++||-++++..++|
T Consensus 163 ILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaD 208 (501)
T COG3845 163 ILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIAD 208 (501)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999875
No 235
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.1e-46 Score=315.47 Aligned_cols=189 Identities=30% Similarity=0.391 Sum_probs=160.5
Q ss_pred cEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 10 RLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 10 ~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
.++++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..... ..++..+
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~-~~~~~~i 80 (221)
T cd03244 2 DIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGL-HDLRSRI 80 (221)
T ss_pred cEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCH-HHHhhhE
Confidence 3789999999964 479999999999999999999999999999999999999999999999998764332 2345679
Q ss_pred eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhh-----------cCCCCCCChhHHHHHHHHHHHhcC
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLA-----------KEKARMLSMGQRKRLQLARLLAID 156 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral~~~ 156 (229)
+|++|++.+++ .|+.||+.+... ....+..++++.+++.+.. ++++.+||+||+||++|||||+.+
T Consensus 81 ~~~~q~~~l~~-~tv~enl~~~~~--~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~ 157 (221)
T cd03244 81 SIIPQDPVLFS-GTIRSNLDPFGE--YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRK 157 (221)
T ss_pred EEECCCCcccc-chHHHHhCcCCC--CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999988775 599999865321 1123345566666665544 468999999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067 157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~ 203 (229)
|+++||||||++||+.+++.+.++++++++ +.|||++||+++++..
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~ 203 (221)
T cd03244 158 SKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLDTIID 203 (221)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHhh
Confidence 999999999999999999999999998854 6899999999998876
No 236
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=1.3e-46 Score=317.59 Aligned_cols=175 Identities=27% Similarity=0.362 Sum_probs=153.5
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHh
Q 027067 26 LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDN 105 (229)
Q Consensus 26 L~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~ 105 (229)
|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..... ..+|++|++.+++.+|+.||
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~------~~~~v~q~~~l~~~~tv~e~ 74 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP------DRMVVFQNYSLLPWLTVREN 74 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh------hheEEecCcccCCCCCHHHH
Confidence 579999999999999999999999999999999999999999999998864321 24799999999998999999
Q ss_pred HHHHHH--hcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q 027067 106 VQWFEV--LEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLE 178 (229)
Q Consensus 106 l~~~~~--~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~ 178 (229)
+.+... .... ...+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.
T Consensus 75 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~ 154 (230)
T TIGR01184 75 IALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQ 154 (230)
T ss_pred HHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHH
Confidence 987532 1111 123567899999998899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 179 YIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 179 ~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
+++.+++++ |+|||++||+++++.+++|
T Consensus 155 ~~l~~~~~~~~~tii~~sH~~~~~~~~~d 183 (230)
T TIGR01184 155 EELMQIWEEHRVTVLMVTHDVDEALLLSD 183 (230)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhcC
Confidence 999998664 8999999999999888764
No 237
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2e-46 Score=350.72 Aligned_cols=198 Identities=21% Similarity=0.301 Sum_probs=167.7
Q ss_pred CcEEEEeEEEEeCC----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC-----CccEEEEcCEeCCCCch
Q 027067 9 PRLLLKNVSCMRNA----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP-----SAGEILWNGHDITQSGI 79 (229)
Q Consensus 9 ~~l~l~~l~~~~~~----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-----~~G~I~~~g~~~~~~~~ 79 (229)
++++++||+++|++ +++|+++||+|++||++||+||||||||||+|+|+|+++| ++|+|+++|+++.....
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 83 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE 83 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence 58999999999963 5799999999999999999999999999999999999986 79999999999865332
Q ss_pred hh--hh-hhcceEeecccc--cCCCCCHHHhHHHHHHhc-C-----ccccHHHHHHHhCCCh---hhcCCCCCCChhHHH
Q 027067 80 FH--QY-KLQLNWLSLKDA--VKEKFTVLDNVQWFEVLE-G-----KQGNSLPALELMGLGR---LAKEKARMLSMGQRK 145 (229)
Q Consensus 80 ~~--~~-~~~~~~~~~~~~--~~~~~tv~e~l~~~~~~~-~-----~~~~~~~~l~~~~l~~---~~~~~~~~LSgGqkq 145 (229)
.. .. ...++|++|++. +++..++.+++.+..... . ...++.++++.+++.+ ..++++.+|||||||
T Consensus 84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~q 163 (529)
T PRK15134 84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQ 163 (529)
T ss_pred HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHH
Confidence 11 12 246999999864 566779999986532211 1 1234567899999975 468999999999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 146 RLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 146 Rv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
||+|||||+.+|++|||||||++||+.+++.+.+++++++++ |.|||+||||++++..++|
T Consensus 164 rv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d 225 (529)
T PRK15134 164 RVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLAD 225 (529)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcC
Confidence 999999999999999999999999999999999999998765 8999999999999988764
No 238
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.9e-46 Score=306.58 Aligned_cols=169 Identities=27% Similarity=0.426 Sum_probs=150.3
Q ss_pred CcEEEEeEEEEeCC----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCC--CCCccEEEEcCEeCCCCchhhh
Q 027067 9 PRLLLKNVSCMRNA----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS--KPSAGEILWNGHDITQSGIFHQ 82 (229)
Q Consensus 9 ~~l~l~~l~~~~~~----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~--~p~~G~I~~~g~~~~~~~~~~~ 82 (229)
..++++|+++.|++ +++|+++||++++||+++|+||||||||||+++|+|+. +|++|+|.++|+++. ..
T Consensus 2 ~~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~-----~~ 76 (192)
T cd03232 2 SVLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD-----KN 76 (192)
T ss_pred cEEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH-----HH
Confidence 36899999999974 67999999999999999999999999999999999986 489999999999875 23
Q ss_pred hhhcceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067 83 YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLL 162 (229)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illl 162 (229)
.+..++|++|++.+++.+|+.||+.+.... . +|||||+|||+||||++.+|++|||
T Consensus 77 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-----------~-------------~LSgGe~qrv~la~al~~~p~vlll 132 (192)
T cd03232 77 FQRSTGYVEQQDVHSPNLTVREALRFSALL-----------R-------------GLSVEQRKRLTIGVELAAKPSILFL 132 (192)
T ss_pred hhhceEEecccCccccCCcHHHHHHHHHHH-----------h-------------cCCHHHhHHHHHHHHHhcCCcEEEE
Confidence 455789999998888989999998864210 0 9999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChh-hHHhhhc
Q 027067 163 DEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPI-QIEDAMN 206 (229)
Q Consensus 163 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~~ 206 (229)
||||++||+.+++.+.+++++++++|.|||++||+++ .+...+|
T Consensus 133 DEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d 177 (192)
T cd03232 133 DEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFD 177 (192)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCC
Confidence 9999999999999999999998777899999999998 4666665
No 239
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=3e-46 Score=309.11 Aligned_cols=170 Identities=29% Similarity=0.423 Sum_probs=149.8
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCC--CCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGF--SKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl--~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
|+++|++++|+++.+++|+||++.+||+++|+|+||||||||+++|+|+ ++|++|+|+++|+++.........+..++
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (200)
T cd03217 1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIF 80 (200)
T ss_pred CeEEEEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEE
Confidence 5789999999988999999999999999999999999999999999999 57999999999999876432222234599
Q ss_pred EeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVA 168 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~ 168 (229)
|++|++.+++..++.+++ ++.+.+|||||+||++||||++.+|+++||||||++
T Consensus 81 ~v~q~~~~~~~~~~~~~l--------------------------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~ 134 (200)
T cd03217 81 LAFQYPPEIPGVKNADFL--------------------------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSG 134 (200)
T ss_pred EeecChhhccCccHHHHH--------------------------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 999998888888887765 122368999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh-hhc
Q 027067 169 LDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED-AMN 206 (229)
Q Consensus 169 LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~-~~~ 206 (229)
||+.+++.+.+++.++++++.|||++||+++.+.+ .+|
T Consensus 135 LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d 173 (200)
T cd03217 135 LDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPD 173 (200)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCC
Confidence 99999999999999987778999999999998887 554
No 240
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-46 Score=316.88 Aligned_cols=195 Identities=27% Similarity=0.362 Sum_probs=166.0
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC-----CCccEEEEcCEeCCCCc-hhhhh
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK-----PSAGEILWNGHDITQSG-IFHQY 83 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~-----p~~G~I~~~g~~~~~~~-~~~~~ 83 (229)
+++++||+++|+++++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|+++|+++.... .....
T Consensus 3 ~l~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14266 3 RIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVEL 82 (250)
T ss_pred EEEEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHH
Confidence 5899999999998899999999999999999999999999999999999864 48999999999875421 11234
Q ss_pred hhcceEeecccccCCCCCHHHhHHHHHHhcC------ccccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHHHHH
Q 027067 84 KLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG------KQGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLARLL 153 (229)
Q Consensus 84 ~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~------~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lAral 153 (229)
+..++|++|++.+++. |+.||+.+...... ....+.++++.+++. +..++++.+||+|||||++|||||
T Consensus 83 ~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral 161 (250)
T PRK14266 83 RKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTI 161 (250)
T ss_pred hhheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHH
Confidence 5679999999888875 99999976532211 112345678888874 346888999999999999999999
Q ss_pred hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
+.+|++|||||||++||+.+++.+.+++.++++ +.|||++||+++++..+++
T Consensus 162 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~~~~ 213 (250)
T PRK14266 162 AVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQQATRVSK 213 (250)
T ss_pred HcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHHHHHhhcC
Confidence 999999999999999999999999999999854 7899999999999998775
No 241
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=3.1e-46 Score=348.81 Aligned_cols=201 Identities=25% Similarity=0.329 Sum_probs=169.0
Q ss_pred CCCcEEEEeEEEEeC-----CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEc-CEe---CCCC
Q 027067 7 PLPRLLLKNVSCMRN-----AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN-GHD---ITQS 77 (229)
Q Consensus 7 ~~~~l~l~~l~~~~~-----~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~-g~~---~~~~ 77 (229)
..++|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++ |.+ +...
T Consensus 276 ~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~ 355 (520)
T TIGR03269 276 GEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKP 355 (520)
T ss_pred CCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCcccccccc
Confidence 346899999999994 2579999999999999999999999999999999999999999999996 642 2221
Q ss_pred ch--hhhhhhcceEeecccccCCCCCHHHhHHHHHHhcC----ccccHHHHHHHhCCCh-----hhcCCCCCCChhHHHH
Q 027067 78 GI--FHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG----KQGNSLPALELMGLGR-----LAKEKARMLSMGQRKR 146 (229)
Q Consensus 78 ~~--~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~----~~~~~~~~l~~~~l~~-----~~~~~~~~LSgGqkqR 146 (229)
.. ....+..++|++|++.+++.+|+.||+.+...... ...++.++++.+++.+ ..++++.+||||||||
T Consensus 356 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qr 435 (520)
T TIGR03269 356 GPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHR 435 (520)
T ss_pred chhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHH
Confidence 10 11234568999999888999999999986432111 1123567899999964 5789999999999999
Q ss_pred HHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhcc
Q 027067 147 LQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 147 v~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~~ 207 (229)
|+|||||+.+|++|||||||++||+.+++.+.+++++++++ |.|||++|||++++...+|.
T Consensus 436 v~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~ 497 (520)
T TIGR03269 436 VALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDR 497 (520)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCE
Confidence 99999999999999999999999999999999999998654 89999999999999988763
No 242
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3.7e-46 Score=309.66 Aligned_cols=186 Identities=24% Similarity=0.335 Sum_probs=157.5
Q ss_pred CCcEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhh
Q 027067 8 LPRLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL 85 (229)
Q Consensus 8 ~~~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 85 (229)
...++++|++++|++ +.+++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++..... ...+.
T Consensus 4 ~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~-~~~~~ 82 (207)
T cd03369 4 HGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPL-EDLRS 82 (207)
T ss_pred CCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCH-HHHHh
Confidence 357999999999975 479999999999999999999999999999999999999999999999998754332 23456
Q ss_pred cceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCC
Q 027067 86 QLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEP 165 (229)
Q Consensus 86 ~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEP 165 (229)
.++|++|++.+++. |+.||+.+... . ...++.+.++ .++++.+|||||+||++||||++.+|+++|||||
T Consensus 83 ~i~~v~q~~~~~~~-tv~~~l~~~~~---~--~~~~~~~~l~----~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 152 (207)
T cd03369 83 SLTIIPQDPTLFSG-TIRSNLDPFDE---Y--SDEEIYGALR----VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEA 152 (207)
T ss_pred hEEEEecCCcccCc-cHHHHhcccCC---C--CHHHHHHHhh----ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence 79999999988764 99999965321 1 1122333333 4678999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 166 SVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 166 t~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|++||+.+++.+.+++.++. +|.|+|++||+++.+.. +|
T Consensus 153 ~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~~~~-~d 191 (207)
T cd03369 153 TASIDYATDALIQKTIREEF-TNSTILTIAHRLRTIID-YD 191 (207)
T ss_pred cccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhh-CC
Confidence 99999999999999999885 48999999999998865 44
No 243
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=8.9e-46 Score=297.23 Aligned_cols=150 Identities=30% Similarity=0.461 Sum_probs=136.3
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067 11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL 90 (229)
Q Consensus 11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~ 90 (229)
|+++||+++|+++++++++||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++.........+..++|+
T Consensus 1 l~~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~ 80 (163)
T cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMV 80 (163)
T ss_pred CEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEE
Confidence 57899999999889999999999999999999999999999999999999999999999999886543222234467777
Q ss_pred ecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q 027067 91 SLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170 (229)
Q Consensus 91 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD 170 (229)
+| ||+||+||++||||++.+|+++||||||++||
T Consensus 81 ~q----------------------------------------------LS~G~~qrl~laral~~~p~illlDEP~~~LD 114 (163)
T cd03216 81 YQ----------------------------------------------LSVGERQMVEIARALARNARLLILDEPTAALT 114 (163)
T ss_pred Ee----------------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCC
Confidence 66 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 171 YDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 171 ~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
+.+++.+.++++++++++.|+|++||+++++.+.+|
T Consensus 115 ~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d 150 (163)
T cd03216 115 PAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIAD 150 (163)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence 999999999999987778999999999999888766
No 244
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=3.5e-46 Score=303.26 Aligned_cols=162 Identities=37% Similarity=0.497 Sum_probs=145.1
Q ss_pred EEEEeEEEEeCCe--eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 11 LLLKNVSCMRNAQ--QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 11 l~l~~l~~~~~~~--~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
++++|++++|+++ ++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ...++..++
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~--~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL--EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH--HHHHHhhEE
Confidence 5789999999765 799999999999999999999999999999999999999999999999987532 123456789
Q ss_pred EeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVA 168 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~ 168 (229)
|++|++.+++ .|++||+ +.+||+||+||++||||++.+|++|||||||++
T Consensus 79 ~~~q~~~~~~-~tv~~~i-----------------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~ 128 (178)
T cd03247 79 VLNQRPYLFD-TTLRNNL-----------------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVG 128 (178)
T ss_pred EEccCCeeec-ccHHHhh-----------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCccc
Confidence 9999988775 5888886 789999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 169 LDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 169 LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
||+.+++.+.+.+.++. ++.|||++||++++++ .+|
T Consensus 129 LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~-~~d 164 (178)
T cd03247 129 LDPITERQLLSLIFEVL-KDKTLIWITHHLTGIE-HMD 164 (178)
T ss_pred CCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHH-hCC
Confidence 99999999999999885 5899999999999886 344
No 245
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.3e-46 Score=300.44 Aligned_cols=160 Identities=33% Similarity=0.513 Sum_probs=143.8
Q ss_pred EEEEeEEEEeCCe--eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 11 LLLKNVSCMRNAQ--QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 11 l~l~~l~~~~~~~--~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
++++|++++|+++ .+++++||+|++|++++|+||||||||||+++|+|+++|++|+|+++|+++..... ..++..++
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~-~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDL-ESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCH-HHHHhhEE
Confidence 4789999999876 79999999999999999999999999999999999999999999999998764332 23456789
Q ss_pred EeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVA 168 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~ 168 (229)
|++|++.+++ .|+.||+ ||+||||||+||||++.+|++|||||||++
T Consensus 80 ~~~~~~~~~~-~t~~e~l--------------------------------LS~G~~~rl~la~al~~~p~llllDEP~~g 126 (171)
T cd03228 80 YVPQDPFLFS-GTIRENI--------------------------------LSGGQRQRIAIARALLRDPPILILDEATSA 126 (171)
T ss_pred EEcCCchhcc-chHHHHh--------------------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcC
Confidence 9999987775 5888876 999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 169 LDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 169 LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
||+.+++.+.+++.++++ ++|||++||++++++. +|
T Consensus 127 LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~-~d 162 (171)
T cd03228 127 LDPETEALILEALRALAK-GKTVIVIAHRLSTIRD-AD 162 (171)
T ss_pred CCHHHHHHHHHHHHHhcC-CCEEEEEecCHHHHHh-CC
Confidence 999999999999999864 7999999999999876 65
No 246
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=2.4e-46 Score=350.02 Aligned_cols=184 Identities=30% Similarity=0.418 Sum_probs=161.0
Q ss_pred cEEEEeEEEEeCC-eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 10 RLLLKNVSCMRNA-QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 10 ~l~l~~l~~~~~~-~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
.++++||+++|++ +++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++... ...++.+++
T Consensus 334 ~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~--~~~lr~~i~ 411 (529)
T TIGR02868 334 TLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL--QDELRRRIS 411 (529)
T ss_pred eEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH--HHHHHhheE
Confidence 5999999999975 5799999999999999999999999999999999999999999999999999876 356788999
Q ss_pred EeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhc-----------CCCCCCChhHHHHHHHHHHHhcCC
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAK-----------EKARMLSMGQRKRLQLARLLAIDR 157 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGqkqRv~lAral~~~p 157 (229)
|++|++.+++. |++||+.++.. ...+++..++++.++++++.. .....||||||||++|||||+.+|
T Consensus 412 ~V~Q~~~lF~~-TI~eNI~~g~~-~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~ 489 (529)
T TIGR02868 412 VFAQDAHLFDT-TVRDNLRLGRP-DATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADA 489 (529)
T ss_pred EEccCcccccc-cHHHHHhccCC-CCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCC
Confidence 99999998876 99999998632 123455677888877765443 345679999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCh
Q 027067 158 PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLP 198 (229)
Q Consensus 158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~ 198 (229)
++||||||||+||+++.+.+.+.+.++. +++|+|+|||++
T Consensus 490 ~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 490 PILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 9999999999999999999999888763 478999999974
No 247
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-45 Score=306.23 Aligned_cols=179 Identities=22% Similarity=0.281 Sum_probs=154.4
Q ss_pred CcEEEEeEEEEeC----CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC---CCccEEEEcCEeCCCCchhh
Q 027067 9 PRLLLKNVSCMRN----AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK---PSAGEILWNGHDITQSGIFH 81 (229)
Q Consensus 9 ~~l~l~~l~~~~~----~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~---p~~G~I~~~g~~~~~~~~~~ 81 (229)
..+.++||+|.|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|.++.... .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~--~ 79 (202)
T cd03233 2 STLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA--E 79 (202)
T ss_pred ceEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch--h
Confidence 3688999999995 5689999999999999999999999999999999999999 89999999999876432 2
Q ss_pred hhhhcceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEE
Q 027067 82 QYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWL 161 (229)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ill 161 (229)
..+..++|++|++.+++.+|+.||+.+..... .++++.+||+||+||++|||||+.+|++||
T Consensus 80 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~------------------~~~~~~~LS~Ge~qrl~laral~~~p~lll 141 (202)
T cd03233 80 KYPGEIIYVSEEDVHFPTLTVRETLDFALRCK------------------GNEFVRGISGGERKRVSIAEALVSRASVLC 141 (202)
T ss_pred hhcceEEEEecccccCCCCcHHHHHhhhhhhc------------------cccchhhCCHHHHHHHHHHHHHhhCCCEEE
Confidence 34567999999998999999999987643210 567889999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEE-eCChhhHHhhhcc
Q 027067 162 LDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVA-THLPIQIEDAMNL 207 (229)
Q Consensus 162 lDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~v-tH~~~~~~~~~~~ 207 (229)
|||||++||+.+++.+.+++.+++++ +.|+|++ +|+.+++.+.+|.
T Consensus 142 lDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~ 189 (202)
T cd03233 142 WDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDK 189 (202)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCe
Confidence 99999999999999999999998765 5665555 5666788877763
No 248
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=3.9e-46 Score=318.02 Aligned_cols=189 Identities=23% Similarity=0.312 Sum_probs=162.6
Q ss_pred EEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEee
Q 027067 12 LLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLS 91 (229)
Q Consensus 12 ~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~ 91 (229)
+++||++. .+|+|+||+|++||+++|+||||||||||+++|+|+++ .+|+|+++|+++..... ...+..++|++
T Consensus 2 ~~~~l~~~----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~-~~~~~~i~~v~ 75 (248)
T PRK03695 2 QLNDVAVS----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSA-AELARHRAYLS 75 (248)
T ss_pred cccccchh----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCH-HHHhhheEEec
Confidence 57888875 38999999999999999999999999999999999986 48999999998865432 22345689999
Q ss_pred cccccCCCCCHHHhHHHHHHhcCc----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhc-------CCCeE
Q 027067 92 LKDAVKEKFTVLDNVQWFEVLEGK----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAI-------DRPIW 160 (229)
Q Consensus 92 ~~~~~~~~~tv~e~l~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~-------~p~il 160 (229)
|++.+++.+|+.+|+.+....... ...+.++++.+++.+..++++.+||||||||++|||||+. +|++|
T Consensus 76 q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~ll 155 (248)
T PRK03695 76 QQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLL 155 (248)
T ss_pred ccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEE
Confidence 998888889999999875321111 1235678999999888899999999999999999999997 67999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 161 LLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 161 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
||||||++||+.+++.+.+++.+++++|.|||++||+++++..++|
T Consensus 156 llDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d 201 (248)
T PRK03695 156 LLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHAD 201 (248)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCC
Confidence 9999999999999999999999987778999999999999988775
No 249
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3.7e-46 Score=308.96 Aligned_cols=178 Identities=24% Similarity=0.303 Sum_probs=148.8
Q ss_pred EEEEeEEEEeCCe-----eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhh
Q 027067 11 LLLKNVSCMRNAQ-----QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL 85 (229)
Q Consensus 11 l~l~~l~~~~~~~-----~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 85 (229)
++++||+++|+++ ++|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|+++|
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------- 66 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------- 66 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC--------------
Confidence 5799999999764 799999999999999999999999999999999999999999999988
Q ss_pred cceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCC-----------ChhhcCCCCCCChhHHHHHHHHHHHh
Q 027067 86 QLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGL-----------GRLAKEKARMLSMGQRKRLQLARLLA 154 (229)
Q Consensus 86 ~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGqkqRv~lAral~ 154 (229)
+++|++|++.++ ..|++||+.+..... .....++++.+++ ....++.+.+||+|||||++|||||+
T Consensus 67 ~i~~~~q~~~l~-~~t~~enl~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~ 143 (204)
T cd03250 67 SIAYVSQEPWIQ-NGTIRENILFGKPFD--EERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVY 143 (204)
T ss_pred EEEEEecCchhc-cCcHHHHhccCCCcC--HHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHh
Confidence 478999998887 569999998642211 1122333333333 33345678999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 155 IDRPIWLLDEPSVALDYDGVRLLEY-IIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 155 ~~p~illlDEPt~~LD~~~~~~l~~-~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
.+|+++||||||++||+.+++.+.+ ++..+.++|.|||++||+++.+.. +|
T Consensus 144 ~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~-~d 195 (204)
T cd03250 144 SDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH-AD 195 (204)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh-CC
Confidence 9999999999999999999988877 566665668999999999988876 54
No 250
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=8.4e-46 Score=309.80 Aligned_cols=191 Identities=21% Similarity=0.270 Sum_probs=156.6
Q ss_pred EEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCch---hhhhhhcc
Q 027067 12 LLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI---FHQYKLQL 87 (229)
Q Consensus 12 ~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~---~~~~~~~~ 87 (229)
.+.|+++.|+ +.++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..... ....+..+
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 5789999996 5679999999999999999999999999999999999999999999999987754221 11234568
Q ss_pred eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChh-----------hcCCCCCCChhHHHHHHHHHHHhcC
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRL-----------AKEKARMLSMGQRKRLQLARLLAID 156 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqRv~lAral~~~ 156 (229)
+|++|++.++ ..|++||+.+.... ......++++.+++.+. .++++.+|||||||||+||||++.+
T Consensus 82 ~~~~q~~~~~-~~t~~~nl~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 158 (218)
T cd03290 82 AYAAQKPWLL-NATVEENITFGSPF--NKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQN 158 (218)
T ss_pred EEEcCCCccc-cccHHHHHhhcCcC--CHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhC
Confidence 9999998877 56999999764321 11223455666666433 3467899999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHH--HHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 157 RPIWLLDEPSVALDYDGVRLLEY--IIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 157 p~illlDEPt~~LD~~~~~~l~~--~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|++|||||||++||+.+++.+.+ +++.+++.|.|+|++||+++.+.. +|
T Consensus 159 p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~-~d 209 (218)
T cd03290 159 TNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPH-AD 209 (218)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhh-CC
Confidence 99999999999999999998887 777777778999999999988753 44
No 251
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-45 Score=325.12 Aligned_cols=197 Identities=26% Similarity=0.348 Sum_probs=166.3
Q ss_pred CCcEEEEeEEEEeC--CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC-----CCccEEEEcCEeCCCCch-
Q 027067 8 LPRLLLKNVSCMRN--AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK-----PSAGEILWNGHDITQSGI- 79 (229)
Q Consensus 8 ~~~l~l~~l~~~~~--~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~-----p~~G~I~~~g~~~~~~~~- 79 (229)
..+++++|++++|. .+++|+|+||+|++||++||+|+||||||||+++|+|+.+ |++|+|.++|+++.....
T Consensus 78 ~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~ 157 (329)
T PRK14257 78 ANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKIS 157 (329)
T ss_pred CceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 35899999999994 4579999999999999999999999999999999999986 579999999999863211
Q ss_pred hhhhhhcceEeecccccCCCCCHHHhHHHHHHhcCc--c----ccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHH
Q 027067 80 FHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK--Q----GNSLPALELMGLG----RLAKEKARMLSMGQRKRLQL 149 (229)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~--~----~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~l 149 (229)
....+..++|++|++.++. .|++||+.+....... . ..+.++++.+++. ...++++.+|||||||||+|
T Consensus 158 ~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~L 236 (329)
T PRK14257 158 SLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCI 236 (329)
T ss_pred hHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHH
Confidence 1234567999999998875 6999999875432211 1 1245667888773 35688999999999999999
Q ss_pred HHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 150 ARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 150 Aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|||++.+|+||||||||++||+.+...+.+.++.+.+ ++|||++||+++.+.+++|
T Consensus 237 ARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~~i~~~~D 292 (329)
T PRK14257 237 ARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMAQAQRISD 292 (329)
T ss_pred HHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCC
Confidence 9999999999999999999999999999999998865 6899999999999988664
No 252
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.1e-45 Score=339.04 Aligned_cols=200 Identities=27% Similarity=0.418 Sum_probs=168.5
Q ss_pred CCCcEEEEeEEEEeCC-----------eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCC
Q 027067 7 PLPRLLLKNVSCMRNA-----------QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDIT 75 (229)
Q Consensus 7 ~~~~l~l~~l~~~~~~-----------~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~ 75 (229)
..|.++++||++.|.. ..+++||||++.+||++||+|+||||||||.|+|+|+.+|++|+|.++|.+..
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~ 356 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLD 356 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccc
Confidence 4578999999999962 36899999999999999999999999999999999999999999999998722
Q ss_pred C-CchhhhhhhcceEee--cccccCCCCCHHHhHHHHHHhcC------ccccHHHHHHHhCCCh-hhcCCCCCCChhHHH
Q 027067 76 Q-SGIFHQYKLQLNWLS--LKDAVKEKFTVLDNVQWFEVLEG------KQGNSLPALELMGLGR-LAKEKARMLSMGQRK 145 (229)
Q Consensus 76 ~-~~~~~~~~~~~~~~~--~~~~~~~~~tv~e~l~~~~~~~~------~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkq 145 (229)
- .......++++-+++ +..++.|.+||.+.+........ ..+++.++++.++|.. +++++|++|||||||
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQ 436 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQ 436 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhH
Confidence 1 111223334444445 45678999999999876543221 1234667899999975 799999999999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 146 RLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 146 Rv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
||+|||||+.+|++|++|||||+||+..+..+.+++.+++++ |.|.|+||||+..++..+|
T Consensus 437 RvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~d 498 (539)
T COG1123 437 RVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIAD 498 (539)
T ss_pred HHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCc
Confidence 999999999999999999999999999999999999998765 9999999999999999875
No 253
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=1e-45 Score=311.95 Aligned_cols=179 Identities=25% Similarity=0.320 Sum_probs=154.1
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC----CccEEEEcCEeCCCCchhhhhhhcceEeecccc--cCC
Q 027067 25 ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP----SAGEILWNGHDITQSGIFHQYKLQLNWLSLKDA--VKE 98 (229)
Q Consensus 25 iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p----~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 98 (229)
+++|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|+++|+++... ...+..++|++|++. +++
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~---~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL---SIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh---hhhhheeEEEecCchhhcCc
Confidence 57899999999999999999999999999999999999 899999999987542 122357899999974 556
Q ss_pred CCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCC---hhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q 027067 99 KFTVLDNVQWFEVLEG-----KQGNSLPALELMGLG---RLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170 (229)
Q Consensus 99 ~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~---~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD 170 (229)
.+|+.+|+.+...... ...++.++++.+++. +..++++.+|||||||||+||||++.+|++|||||||++||
T Consensus 78 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD 157 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLD 157 (230)
T ss_pred ccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 7899999865432211 122356789999997 57899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 171 YDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 171 ~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
+.+++.+.+++.+++++ |+|||++||+++++..++|
T Consensus 158 ~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d 194 (230)
T TIGR02770 158 VVNQARVLKLLRELRQLFGTGILLITHDLGVVARIAD 194 (230)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 99999999999998764 8899999999999988775
No 254
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-45 Score=317.71 Aligned_cols=197 Identities=25% Similarity=0.353 Sum_probs=168.2
Q ss_pred cEEEEeEEEEeCC----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC-C----CccEEEEcCEeCCCCchh
Q 027067 10 RLLLKNVSCMRNA----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK-P----SAGEILWNGHDITQSGIF 80 (229)
Q Consensus 10 ~l~l~~l~~~~~~----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~-p----~~G~I~~~g~~~~~~~~~ 80 (229)
.|+++||+++|.. .++++||||+|++||++||+|+|||||||+.++|+|+++ | .+|+|.|+|+++...+..
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 3789999999843 579999999999999999999999999999999999997 4 579999999998766543
Q ss_pred h--h-hhhcceEeeccc--ccCCCCCHHHhHHHHHHhc-C------ccccHHHHHHHhCCCh---hhcCCCCCCChhHHH
Q 027067 81 H--Q-YKLQLNWLSLKD--AVKEKFTVLDNVQWFEVLE-G------KQGNSLPALELMGLGR---LAKEKARMLSMGQRK 145 (229)
Q Consensus 81 ~--~-~~~~~~~~~~~~--~~~~~~tv~e~l~~~~~~~-~------~~~~~~~~l~~~~l~~---~~~~~~~~LSgGqkq 145 (229)
+ . +...+++++|++ ++.|.+|+.+.+.-..... . ..+++.++|+.+|+.+ ..+.+|++|||||+|
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ 160 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ 160 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence 2 1 235799999996 5788888887765433221 1 1235678899999963 569999999999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067 146 RLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 146 Rv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~ 206 (229)
||.||.||+.+|++||+||||++||...+..+.++++++++ .|.++|+||||+..+.+.+|
T Consensus 161 RV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aD 222 (316)
T COG0444 161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIAD 222 (316)
T ss_pred HHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcc
Confidence 99999999999999999999999999999999999999876 69999999999999999886
No 255
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=9.9e-47 Score=298.14 Aligned_cols=194 Identities=28% Similarity=0.405 Sum_probs=173.4
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW 89 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 89 (229)
.++++++.+.-++.++|+++||++.+||+++|+||||||||||+|+++-+++|++|+++|.|++++..++ +.++.+++|
T Consensus 3 lle~kq~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~p-ea~Rq~VsY 81 (223)
T COG4619 3 LLELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKP-EAYRQQVSY 81 (223)
T ss_pred chHHHHHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccCh-HHHHHHHHH
Confidence 4677788777789999999999999999999999999999999999999999999999999999988764 568889999
Q ss_pred eecccccCCCCCHHHhHHHHHHhcC---ccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCC
Q 027067 90 LSLKDAVKEKFTVLDNVQWFEVLEG---KQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEP 165 (229)
Q Consensus 90 ~~~~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEP 165 (229)
+.|.+.+|.. ||+||+.|....+. ........++++++. .++++.+.+||||||||++|+|-|..-|+||+||||
T Consensus 82 ~~Q~paLfg~-tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~ 160 (223)
T COG4619 82 CAQTPALFGD-TVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEI 160 (223)
T ss_pred HHcCcccccc-chhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCc
Confidence 9999999987 99999998766543 234466789999996 568999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHH-HhCCcEEEEEeCChhhHHhhh
Q 027067 166 SVALDYDGVRLLEYIIAEH-RKKGGIVIVATHLPIQIEDAM 205 (229)
Q Consensus 166 t~~LD~~~~~~l~~~l~~~-~~~g~tii~vtH~~~~~~~~~ 205 (229)
||+||+.+++.+.+++..+ ++++..++.||||.++.....
T Consensus 161 TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha 201 (223)
T COG4619 161 TSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHA 201 (223)
T ss_pred hhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhh
Confidence 9999999999999999886 477899999999998855443
No 256
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.8e-46 Score=302.60 Aligned_cols=196 Identities=28% Similarity=0.341 Sum_probs=175.8
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW 89 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 89 (229)
||+.+|++++..++.+|++|||++.+||+.+|+||||||||||||.|+|...|++|++.++|.++..+... ...+..+.
T Consensus 1 mi~a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~-~lA~~raV 79 (259)
T COG4559 1 MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPE-ELARHRAV 79 (259)
T ss_pred CeeeeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHH-HHHHHhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999877653 33455688
Q ss_pred eecccccCCCCCHHHhHHHHHHhcCc-----cc--cHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhc------C
Q 027067 90 LSLKDAVKEKFTVLDNVQWFEVLEGK-----QG--NSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAI------D 156 (229)
Q Consensus 90 ~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~--~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~------~ 156 (229)
++|+..+-+.+||.|.+.++....+. +. ...++|...++..+..+...+|||||||||.+||+|++ +
T Consensus 80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~ 159 (259)
T COG4559 80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPS 159 (259)
T ss_pred cccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCC
Confidence 99999998899999999987543311 11 25678999999999999999999999999999999987 4
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
+++|+||||||+||..+++...++.+++..+|..|+.|-||++.....+|
T Consensus 160 ~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaD 209 (259)
T COG4559 160 GRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYAD 209 (259)
T ss_pred CceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhh
Confidence 56999999999999999999999999999999999999999999999876
No 257
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.3e-45 Score=319.37 Aligned_cols=190 Identities=22% Similarity=0.295 Sum_probs=165.2
Q ss_pred cEEEEeEEEEe--CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 10 RLLLKNVSCMR--NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 10 ~l~l~~l~~~~--~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
.|+++||+++| ++..+|+|+||+|++||+++|+|+||||||||+++|+|+++ ++|+|+++|.++...+. ...+..+
T Consensus 2 ~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~-~~lr~~i 79 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPL-QKWRKAF 79 (275)
T ss_pred eEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCH-HHHhhhE
Confidence 48899999999 45779999999999999999999999999999999999998 78999999999865432 2346689
Q ss_pred eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCC-----------CChhHHHHHHHHHHHhcC
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARM-----------LSMGQRKRLQLARLLAID 156 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----------LSgGqkqRv~lAral~~~ 156 (229)
+|++|++.+++. |+++|+..+.. ...++..++++.+|+.+..++.+.. ||+|||||++||||++.+
T Consensus 80 ~~v~q~~~lf~~-tv~~nl~~~~~--~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~ 156 (275)
T cd03289 80 GVIPQKVFIFSG-TFRKNLDPYGK--WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSK 156 (275)
T ss_pred EEECCCcccchh-hHHHHhhhccC--CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 999999998875 99999964321 1234566788999998888888876 999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|+||||||||++||+.+++.+.+.+.+.. .++|||+|||+++.+.. +|
T Consensus 157 p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~~i~~-~d 204 (275)
T cd03289 157 AKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIEAMLE-CQ 204 (275)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHHHHHh-CC
Confidence 99999999999999999999999999864 48999999999998875 44
No 258
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-46 Score=311.74 Aligned_cols=204 Identities=29% Similarity=0.448 Sum_probs=172.2
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
++|+++||+++|+++++|+|+|++|++||.++|+|||||||||||++++|.++|++|.+.+.|+...........++.||
T Consensus 30 ~li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG 109 (257)
T COG1119 30 PLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIG 109 (257)
T ss_pred ceEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhC
Confidence 57999999999999999999999999999999999999999999999999999999999999998766544345778899
Q ss_pred Eeecc--cccCCCCCHHHhHH--HHHHh--c--C----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcC
Q 027067 89 WLSLK--DAVKEKFTVLDNVQ--WFEVL--E--G----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAID 156 (229)
Q Consensus 89 ~~~~~--~~~~~~~tv~e~l~--~~~~~--~--~----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 156 (229)
+++.. ..+.+..+++|-+. ++... + . ...++..+++.+|+.+..+++..+||-||||||.|||||+.+
T Consensus 110 ~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~ 189 (257)
T COG1119 110 LVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKD 189 (257)
T ss_pred ccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcC
Confidence 99743 33445556766553 22111 1 1 123456789999999999999999999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CcEEEEEeCChhhHHhhhccCCCCCCCCcchHH
Q 027067 157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKK--GGIVIVATHLPIQIEDAMNLRLPPRFPRRMTLV 220 (229)
Q Consensus 157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~--g~tii~vtH~~~~~~~~~~~~~~~~~~~~~~~~ 220 (229)
|++|||||||+|||..+++.+.+.+.++... +.++|+|||..++ +||+|++++.+.
T Consensus 190 P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eE--------i~~~~th~lll~ 247 (257)
T COG1119 190 PELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEE--------IPPCFTHRLLLK 247 (257)
T ss_pred CCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhh--------cccccceEEEee
Confidence 9999999999999999999999999998655 6789999998766 578888876654
No 259
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1e-45 Score=343.99 Aligned_cols=193 Identities=18% Similarity=0.314 Sum_probs=166.8
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
++++++|+++ ++|+++||+|.+||+++|+||||||||||+|+|+|+++|++|+|+++|+++.........+.+++
T Consensus 256 ~~l~~~~l~~-----~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 330 (501)
T PRK10762 256 VRLKVDNLSG-----PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIV 330 (501)
T ss_pred cEEEEeCccc-----CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCE
Confidence 5799999985 37999999999999999999999999999999999999999999999998865432223345799
Q ss_pred Eeeccc---ccCCCCCHHHhHHHHHH--hc---C------ccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHH
Q 027067 89 WLSLKD---AVKEKFTVLDNVQWFEV--LE---G------KQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARLL 153 (229)
Q Consensus 89 ~~~~~~---~~~~~~tv~e~l~~~~~--~~---~------~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral 153 (229)
|++|++ .+++.+|+.||+.+... .. . ....+.++++.+++. +..++++.+|||||||||+|||||
T Consensus 331 ~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al 410 (501)
T PRK10762 331 YISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGL 410 (501)
T ss_pred EecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHH
Confidence 999986 57788999999976321 10 0 112356789999995 678999999999999999999999
Q ss_pred hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
+.+|++|||||||++||+.+++.+.+++++++++|.|||++|||++++..++|
T Consensus 411 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d 463 (501)
T PRK10762 411 MTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSD 463 (501)
T ss_pred hhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCC
Confidence 99999999999999999999999999999998789999999999999998764
No 260
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-45 Score=344.02 Aligned_cols=194 Identities=19% Similarity=0.257 Sum_probs=166.6
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
+.++++|+++. .+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.........+..++
T Consensus 256 ~~l~~~~~~~~----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 331 (501)
T PRK11288 256 VRLRLDGLKGP----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIM 331 (501)
T ss_pred cEEEEeccccC----CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCE
Confidence 46999999842 58999999999999999999999999999999999999999999999998754322233456789
Q ss_pred Eeeccc---ccCCCCCHHHhHHHHHHhc--------C---ccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHH
Q 027067 89 WLSLKD---AVKEKFTVLDNVQWFEVLE--------G---KQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARLL 153 (229)
Q Consensus 89 ~~~~~~---~~~~~~tv~e~l~~~~~~~--------~---~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral 153 (229)
|++|++ .+++.+|+.||+.+..... . ....+.++++.+++. +..++++.+|||||||||+|||||
T Consensus 332 ~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al 411 (501)
T PRK11288 332 LCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWL 411 (501)
T ss_pred EcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHH
Confidence 999986 3788899999987532110 0 112356789999994 678999999999999999999999
Q ss_pred hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
+.+|++|||||||+|||+.+++.+.+++.+++++|.|||++|||++++.+++|
T Consensus 412 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d 464 (501)
T PRK11288 412 SEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVAD 464 (501)
T ss_pred ccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCC
Confidence 99999999999999999999999999999998889999999999999998875
No 261
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=9.5e-46 Score=353.13 Aligned_cols=192 Identities=28% Similarity=0.402 Sum_probs=166.9
Q ss_pred CcEEEEeEEEEeCCe--eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067 9 PRLLLKNVSCMRNAQ--QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ 86 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~--~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 86 (229)
..++++||+++|+.. .+|+|+||+|++||++||+|+||||||||+|+|+|+++|++|+|++||.|+...+. ...+++
T Consensus 470 g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~-~~lR~~ 548 (709)
T COG2274 470 GEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDL-ASLRRQ 548 (709)
T ss_pred ceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCH-HHHHhh
Confidence 359999999999765 69999999999999999999999999999999999999999999999999987664 467899
Q ss_pred ceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChh-----------hcCCCCCCChhHHHHHHHHHHHhc
Q 027067 87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRL-----------AKEKARMLSMGQRKRLQLARLLAI 155 (229)
Q Consensus 87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqRv~lAral~~ 155 (229)
++|++|++.++.. |++||+.+..... ..+++.+++...|..++ .......||||||||++|||||+.
T Consensus 549 ig~V~Q~~~Lf~g-SI~eNi~l~~p~~-~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~ 626 (709)
T COG2274 549 VGYVLQDPFLFSG-SIRENIALGNPEA-TDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLS 626 (709)
T ss_pred eeEEcccchhhcC-cHHHHHhcCCCCC-CHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhcc
Confidence 9999999988766 9999999865322 22345555555554443 456678899999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067 156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA 204 (229)
Q Consensus 156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~ 204 (229)
+|+|||||||||+||+.+++.+.+.+.++. .|+|+|++||+++.+..+
T Consensus 627 ~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~ti~~a 674 (709)
T COG2274 627 KPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLSTIRSA 674 (709)
T ss_pred CCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccchHhhhc
Confidence 999999999999999999999999998875 479999999999999886
No 262
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=2.5e-45 Score=352.65 Aligned_cols=188 Identities=27% Similarity=0.391 Sum_probs=164.6
Q ss_pred cEEEEeEEEEeC--CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 10 RLLLKNVSCMRN--AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 10 ~l~l~~l~~~~~--~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
.++++||+++|+ ++++|+|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|++||+++...+. ..++.++
T Consensus 451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~-~~lr~~i 529 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDV-QAVRRQL 529 (686)
T ss_pred eEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCH-HHHHhcc
Confidence 599999999995 4679999999999999999999999999999999999999999999999999987654 4577899
Q ss_pred eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhc-----------CCCCCCChhHHHHHHHHHHHhcC
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAK-----------EKARMLSMGQRKRLQLARLLAID 156 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGqkqRv~lAral~~~ 156 (229)
+|++|++.++.. |++||+.++.. ...++..++++.+++.++.. .....||||||||++|||||+.+
T Consensus 530 ~~v~Q~~~lf~g-TI~eNi~~~~~--~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~ 606 (686)
T TIGR03797 530 GVVLQNGRLMSG-SIFENIAGGAP--LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRK 606 (686)
T ss_pred EEEccCCccCcc-cHHHHHhcCCC--CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcC
Confidence 999999999876 99999987643 23455677788877765543 34568999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067 157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA 204 (229)
Q Consensus 157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~ 204 (229)
|++||||||||+||+.+.+.+.+.++.+ ++|+|+|||+++.+..+
T Consensus 607 p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~~i~~~ 651 (686)
T TIGR03797 607 PRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLSTIRNA 651 (686)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChHHHHcC
Confidence 9999999999999999999998888765 57999999999888763
No 263
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1.6e-45 Score=347.87 Aligned_cols=191 Identities=29% Similarity=0.405 Sum_probs=163.6
Q ss_pred cEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 10 RLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 10 ~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
.++++||+++|++ +++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|+++|.++..... ..++..+
T Consensus 341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~-~~~~~~i 419 (582)
T PRK11176 341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTL-ASLRNQV 419 (582)
T ss_pred eEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCH-HHHHhhc
Confidence 5999999999964 679999999999999999999999999999999999999999999999999877653 3567789
Q ss_pred eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhh-----------cCCCCCCChhHHHHHHHHHHHhcC
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLA-----------KEKARMLSMGQRKRLQLARLLAID 156 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral~~~ 156 (229)
+|++|++.+++. |++||+.++.......++..++++.+++.++. .....+||||||||++|||||+++
T Consensus 420 ~~v~Q~~~lf~~-Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~ 498 (582)
T PRK11176 420 ALVSQNVHLFND-TIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRD 498 (582)
T ss_pred eEEccCceeecc-hHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhC
Confidence 999999998875 99999987532112334566777777765443 233567999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067 157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~ 203 (229)
|++||||||||+||+.+...+.+.+.++. +++|+|+|||+++.+..
T Consensus 499 ~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~~~~~ 544 (582)
T PRK11176 499 SPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLSTIEK 544 (582)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchHHHHh
Confidence 99999999999999999999999988874 47999999999988765
No 264
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.8e-45 Score=346.72 Aligned_cols=190 Identities=24% Similarity=0.380 Sum_probs=162.8
Q ss_pred cEEEEeEEEEe-CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 10 RLLLKNVSCMR-NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 10 ~l~l~~l~~~~-~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
.++++||++.| +++++|+|+||+|++|+.+||+||||||||||+++|+|++ |++|+|+++|.++...+. ..++++++
T Consensus 349 ~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~-~~lr~~i~ 426 (588)
T PRK11174 349 TIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDP-ESWRKHLS 426 (588)
T ss_pred eEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCH-HHHHhheE
Confidence 59999999754 6678999999999999999999999999999999999999 999999999999987654 45678899
Q ss_pred EeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCCh-----------hhcCCCCCCChhHHHHHHHHHHHhcCC
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGR-----------LAKEKARMLSMGQRKRLQLARLLAIDR 157 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqRv~lAral~~~p 157 (229)
|++|++.+|.. |++||+.++.. ...+++..++++.+++.+ ........||||||||++|||||+++|
T Consensus 427 ~v~Q~~~LF~~-TI~eNI~~g~~-~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~ 504 (588)
T PRK11174 427 WVGQNPQLPHG-TLRDNVLLGNP-DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPC 504 (588)
T ss_pred EecCCCcCCCc-CHHHHhhcCCC-CCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999998876 99999988632 123345566666665543 334556789999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067 158 PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA 204 (229)
Q Consensus 158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~ 204 (229)
+|||||||||+||.++.+.+.+.+.++. +++|+|++||+++.+..+
T Consensus 505 ~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~~i~~a 550 (588)
T PRK11174 505 QLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLEDLAQW 550 (588)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChHHHHhC
Confidence 9999999999999999999999888874 479999999999888764
No 265
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=6.5e-45 Score=374.28 Aligned_cols=197 Identities=22% Similarity=0.328 Sum_probs=176.7
Q ss_pred CCcEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhh
Q 027067 8 LPRLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL 85 (229)
Q Consensus 8 ~~~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 85 (229)
..+|+++||+|+|++ +.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++... ....++
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~--~~~~r~ 2012 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTN--ISDVHQ 2012 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcch--HHHHhh
Confidence 357999999999985 6799999999999999999999999999999999999999999999999998542 123456
Q ss_pred cceEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeE
Q 027067 86 QLNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIW 160 (229)
Q Consensus 86 ~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~il 160 (229)
.++|++|.+.+++.+|++|++.++...++. ...+.++++.++|.+..++++++||||||||++||+||+.+|+||
T Consensus 2013 ~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VL 2092 (2272)
T TIGR01257 2013 NMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLV 2092 (2272)
T ss_pred hEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 799999999999999999999886654332 123456799999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 161 LLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 161 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
||||||+|||+.+++.+++++.+++++|+|||++||++++++..+|
T Consensus 2093 LLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcD 2138 (2272)
T TIGR01257 2093 LLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCT 2138 (2272)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence 9999999999999999999999988789999999999999998764
No 266
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-46 Score=303.10 Aligned_cols=197 Identities=28% Similarity=0.344 Sum_probs=176.8
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW 89 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 89 (229)
|++++||+|+|+++.+++++|++|++|.+++|+|||||||||||.+++.++++++|+|+++|.++...+- ....+.++.
T Consensus 1 MI~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s-~~LAk~lSI 79 (252)
T COG4604 1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPS-KELAKKLSI 79 (252)
T ss_pred CeeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCCh-HHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999987543 345667788
Q ss_pred eecccccCCCCCHHHhHHHHHHhc--C-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067 90 LSLKDAVKEKFTVLDNVQWFEVLE--G-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLL 162 (229)
Q Consensus 90 ~~~~~~~~~~~tv~e~l~~~~~~~--~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illl 162 (229)
+.|...+...+||+|-+.|+...+ + .+..+.++++.++|+++.+++..+||||||||+.+|..++++.+.++|
T Consensus 80 LkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlL 159 (252)
T COG4604 80 LKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLL 159 (252)
T ss_pred HHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEe
Confidence 889999999999999998864221 1 123467899999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhcc
Q 027067 163 DEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 163 DEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~~ 207 (229)
|||.++||.++.-.++++++.+.++ |+||++|-||.+++....|.
T Consensus 160 DEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~ 205 (252)
T COG4604 160 DEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDH 205 (252)
T ss_pred cCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhh
Confidence 9999999999999999999987654 99999999999999887764
No 267
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=3e-45 Score=339.88 Aligned_cols=199 Identities=20% Similarity=0.278 Sum_probs=163.8
Q ss_pred CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC-CccEEEEcCEeCCCCchhhhhhhc
Q 027067 8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP-SAGEILWNGHDITQSGIFHQYKLQ 86 (229)
Q Consensus 8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-~~G~I~~~g~~~~~~~~~~~~~~~ 86 (229)
.++|+++|+++.|+++.+|+|+||+|++||+++|+||||||||||+|+|+|+.+| ++|+|+++|+++.........+..
T Consensus 258 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 337 (490)
T PRK10938 258 EPRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKH 337 (490)
T ss_pred CceEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhh
Confidence 4589999999999988899999999999999999999999999999999998876 699999999875321111223567
Q ss_pred ceEeecccccCCC--CCHHHhHHHHHH----hcC-----ccccHHHHHHHhCCCh-hhcCCCCCCChhHHHHHHHHHHHh
Q 027067 87 LNWLSLKDAVKEK--FTVLDNVQWFEV----LEG-----KQGNSLPALELMGLGR-LAKEKARMLSMGQRKRLQLARLLA 154 (229)
Q Consensus 87 ~~~~~~~~~~~~~--~tv~e~l~~~~~----~~~-----~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~ 154 (229)
++|++|++.++.. .++.+++.+... ... ....+.++++.+++.+ ..++++.+|||||||||+|||||+
T Consensus 338 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~ 417 (490)
T PRK10938 338 IGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALV 417 (490)
T ss_pred ceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHh
Confidence 9999998765432 466666543210 000 0124567899999987 889999999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEeCChhhHHhh-hc
Q 027067 155 IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKG-GIVIVATHLPIQIEDA-MN 206 (229)
Q Consensus 155 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g-~tii~vtH~~~~~~~~-~~ 206 (229)
.+|++|||||||+|||+.+++.+.++|.++++++ .|||++|||++++.++ ++
T Consensus 418 ~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d 471 (490)
T PRK10938 418 KHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITH 471 (490)
T ss_pred cCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhhe
Confidence 9999999999999999999999999999997776 4699999999999874 44
No 268
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=5.8e-45 Score=343.90 Aligned_cols=192 Identities=31% Similarity=0.453 Sum_probs=168.8
Q ss_pred CcEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067 9 PRLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ 86 (229)
Q Consensus 9 ~~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 86 (229)
+.++++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+. ..++.+
T Consensus 337 ~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~-~~~r~~ 415 (574)
T PRK11160 337 VSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSE-AALRQA 415 (574)
T ss_pred CeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCH-HHHHhh
Confidence 46999999999964 579999999999999999999999999999999999999999999999999887653 456778
Q ss_pred ceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcC----------CCCCCChhHHHHHHHHHHHhcC
Q 027067 87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKE----------KARMLSMGQRKRLQLARLLAID 156 (229)
Q Consensus 87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~LSgGqkqRv~lAral~~~ 156 (229)
++|++|++.++.. |++||+.++.. ...+++..++++.+++.++.++ ....||||||||++||||++.+
T Consensus 416 i~~v~Q~~~lf~~-ti~~Ni~~~~~-~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~ 493 (574)
T PRK11160 416 ISVVSQRVHLFSA-TLRDNLLLAAP-NASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHD 493 (574)
T ss_pred eeEEcccchhhcc-cHHHHhhcCCC-ccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 9999999988875 99999987532 1234556788889888776654 5678999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067 157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA 204 (229)
Q Consensus 157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~ 204 (229)
|++|||||||++||+.+++.+.+.+.++. +++|+|++||+++.+..+
T Consensus 494 ~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~~~~~ 540 (574)
T PRK11160 494 APLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTGLEQF 540 (574)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhHHHhC
Confidence 99999999999999999999999998875 489999999999988763
No 269
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=3.5e-45 Score=341.13 Aligned_cols=194 Identities=19% Similarity=0.266 Sum_probs=165.6
Q ss_pred CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
.++|+++|+++ .+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.........+.++
T Consensus 266 ~~~l~~~~l~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 340 (510)
T PRK15439 266 APVLTVEDLTG-----EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL 340 (510)
T ss_pred CceEEEeCCCC-----CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCc
Confidence 35899999984 2699999999999999999999999999999999999999999999999886543322234578
Q ss_pred eEeeccc---ccCCCCCHHHhHHHHH----Hhc-C---ccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHHhc
Q 027067 88 NWLSLKD---AVKEKFTVLDNVQWFE----VLE-G---KQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARLLAI 155 (229)
Q Consensus 88 ~~~~~~~---~~~~~~tv~e~l~~~~----~~~-~---~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~ 155 (229)
+|++|++ .+++.+|+.+|+.... ... . ....+.++++.+++. +..++++.+|||||||||+|||||+.
T Consensus 341 ~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~ 420 (510)
T PRK15439 341 VYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEA 420 (510)
T ss_pred EECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhh
Confidence 9999874 4788889999985321 010 0 112355789999997 67899999999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
+|++|||||||+|||+.+++.+.+++++++++|.|||++|||++++.+.+|
T Consensus 421 ~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d 471 (510)
T PRK15439 421 SPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMAD 471 (510)
T ss_pred CCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCC
Confidence 999999999999999999999999999998789999999999999998775
No 270
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-45 Score=338.23 Aligned_cols=197 Identities=20% Similarity=0.278 Sum_probs=165.6
Q ss_pred CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
.++|+++|+++.+ +++|+++||+|++||+++|+||||||||||+|+|+|+.+|++|+|+++|+++.........+..+
T Consensus 248 ~~~i~~~~l~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 325 (491)
T PRK10982 248 EVILEVRNLTSLR--QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGF 325 (491)
T ss_pred CcEEEEeCccccc--CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCC
Confidence 3579999999874 46999999999999999999999999999999999999999999999999886543323335568
Q ss_pred eEeeccc---ccCCCCCHHHhH-----HHHHHhcC------ccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHH
Q 027067 88 NWLSLKD---AVKEKFTVLDNV-----QWFEVLEG------KQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARL 152 (229)
Q Consensus 88 ~~~~~~~---~~~~~~tv~e~l-----~~~~~~~~------~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAra 152 (229)
+|++|+. .+++.+++.+|. .+...... ....+.++++.+++. +..++++.+|||||||||+||||
T Consensus 326 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~a 405 (491)
T PRK10982 326 ALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRW 405 (491)
T ss_pred EEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHH
Confidence 9999874 467778877663 22111101 012346678889995 56799999999999999999999
Q ss_pred HhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 153 LAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 153 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
++.+|++|||||||+|||+.+++.+.+++.+++++|.|||++|||++++..++|
T Consensus 406 l~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d 459 (491)
T PRK10982 406 LLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITD 459 (491)
T ss_pred HhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCC
Confidence 999999999999999999999999999999998889999999999999998775
No 271
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-45 Score=294.07 Aligned_cols=191 Identities=38% Similarity=0.695 Sum_probs=173.4
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
++++.+|++...+...++.++||++.+||++.|.||||||||||||+|+|+.+|++|+|+|+|..+.... ..+....-
T Consensus 1 ~~L~a~~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~--~~~~~~l~ 78 (209)
T COG4133 1 MMLEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR--ESYHQALL 78 (209)
T ss_pred CcchhhhhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccch--hhHHHHHH
Confidence 3688999999999999999999999999999999999999999999999999999999999998886532 22445567
Q ss_pred EeecccccCCCCCHHHhHHHHHHhcCc--cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCC
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEVLEGK--QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPS 166 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt 166 (229)
|+.-++.+-..+|+.||+.|+...... ...+.++++.+||..+.|.++.+||-|||+||+|||.++..++++||||||
T Consensus 79 yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~ 158 (209)
T COG4133 79 YLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPF 158 (209)
T ss_pred HhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcc
Confidence 777788899999999999998876553 456789999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhH
Q 027067 167 VALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQI 201 (229)
Q Consensus 167 ~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~ 201 (229)
++||.++...+..++.....+|..||++||.+-.+
T Consensus 159 taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~ 193 (209)
T COG4133 159 TALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPI 193 (209)
T ss_pred cccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCC
Confidence 99999999999999999988999999999986444
No 272
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=6.7e-45 Score=344.41 Aligned_cols=190 Identities=28% Similarity=0.401 Sum_probs=165.8
Q ss_pred cEEEEeEEEEeCC-eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 10 RLLLKNVSCMRNA-QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 10 ~l~l~~l~~~~~~-~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
.++++||+++|++ +++|+|+||++++||.++|+|+||||||||+++|+|+++|++|+|.+||.++..... ..++.+++
T Consensus 340 ~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~-~~l~~~i~ 418 (592)
T PRK10790 340 RIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSH-SVLRQGVA 418 (592)
T ss_pred eEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCH-HHHHhheE
Confidence 5999999999964 679999999999999999999999999999999999999999999999999976543 45678999
Q ss_pred EeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhc-----------CCCCCCChhHHHHHHHHHHHhcCC
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAK-----------EKARMLSMGQRKRLQLARLLAIDR 157 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGqkqRv~lAral~~~p 157 (229)
|++|++.+|+. |++||+.++. ....+++.++++.+|+.++.+ .....||||||||++|||||+.+|
T Consensus 419 ~v~Q~~~lF~~-Ti~~NI~~~~--~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~ 495 (592)
T PRK10790 419 MVQQDPVVLAD-TFLANVTLGR--DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTP 495 (592)
T ss_pred EEccCCccccc-hHHHHHHhCC--CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 99999999887 9999999864 223445667777777654433 345689999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067 158 PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA 204 (229)
Q Consensus 158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~ 204 (229)
++||||||||+||+++.+.+.+.+.++.+ ++|+|+|||+++.+..+
T Consensus 496 ~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~~l~~~ 541 (592)
T PRK10790 496 QILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLSTIVEA 541 (592)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchHHHHhC
Confidence 99999999999999999999999988754 68999999999888763
No 273
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=1.1e-44 Score=291.61 Aligned_cols=154 Identities=29% Similarity=0.368 Sum_probs=137.2
Q ss_pred EEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067 11 LLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW 89 (229)
Q Consensus 11 l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 89 (229)
++++|++++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. .+++|
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~------------~~i~~ 68 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG------------EDLLF 68 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC------------ceEEE
Confidence 47899999995 468999999999999999999999999999999999999999999999762 35899
Q ss_pred eecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 027067 90 LSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVAL 169 (229)
Q Consensus 90 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~L 169 (229)
++|++.++ ..|+.||+.+. ++.+||||||||++||||++.+|+++||||||++|
T Consensus 69 ~~q~~~~~-~~tv~~nl~~~-------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~L 122 (166)
T cd03223 69 LPQRPYLP-LGTLREQLIYP-------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSAL 122 (166)
T ss_pred ECCCCccc-cccHHHHhhcc-------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCcccc
Confidence 99987765 56999998642 46899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 170 DYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 170 D~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|+.+++.+.+++.++ +.|+|++||+++.. ..+|
T Consensus 123 D~~~~~~l~~~l~~~---~~tiiivsh~~~~~-~~~d 155 (166)
T cd03223 123 DEESEDRLYQLLKEL---GITVISVGHRPSLW-KFHD 155 (166)
T ss_pred CHHHHHHHHHHHHHh---CCEEEEEeCChhHH-hhCC
Confidence 999999999998876 58999999998754 4554
No 274
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=8.8e-45 Score=311.12 Aligned_cols=190 Identities=22% Similarity=0.311 Sum_probs=157.7
Q ss_pred CcEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067 9 PRLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ 86 (229)
Q Consensus 9 ~~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 86 (229)
..|+++|++++|++ +.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|+++..... ..++..
T Consensus 18 ~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~-~~~~~~ 96 (257)
T cd03288 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPL-HTLRSR 96 (257)
T ss_pred ceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCH-HHHhhh
Confidence 46999999999976 579999999999999999999999999999999999999999999999998865432 234567
Q ss_pred ceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHH---------h--CCChhhcCCCCCCChhHHHHHHHHHHHhc
Q 027067 87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALEL---------M--GLGRLAKEKARMLSMGQRKRLQLARLLAI 155 (229)
Q Consensus 87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~---------~--~l~~~~~~~~~~LSgGqkqRv~lAral~~ 155 (229)
++|++|++.+++. |+.+|+..... .......++++. + ++....++++.+||+||+||++|||||+.
T Consensus 97 i~~v~q~~~l~~~-tv~~nl~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 173 (257)
T cd03288 97 LSIILQDPILFSG-SIRFNLDPECK--CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVR 173 (257)
T ss_pred EEEECCCCccccc-HHHHhcCcCCC--CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhc
Confidence 9999999887764 99998753211 011112223333 3 44445566778999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067 156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~ 203 (229)
+|++|||||||++||+.+++.+.+++..+. ++.|||++||+++.+..
T Consensus 174 ~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~~~~ 220 (257)
T cd03288 174 KSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVSTILD 220 (257)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHHHHh
Confidence 999999999999999999999999998874 48999999999999875
No 275
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=9.9e-45 Score=339.09 Aligned_cols=190 Identities=29% Similarity=0.439 Sum_probs=164.2
Q ss_pred cEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 10 RLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 10 ~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
.++++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+. ..+++++
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~-~~lr~~i 398 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADA-DSWRDQI 398 (529)
T ss_pred eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCH-HHHHhhe
Confidence 6999999999975 469999999999999999999999999999999999999999999999999877653 4567889
Q ss_pred eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhh-----------cCCCCCCChhHHHHHHHHHHHhcC
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLA-----------KEKARMLSMGQRKRLQLARLLAID 156 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral~~~ 156 (229)
+|++|++.+++. |++||+.++... ..+++..++++.+++.++. .....+||||||||++||||++++
T Consensus 399 ~~v~Q~~~lf~~-ti~~Ni~~~~~~-~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~ 476 (529)
T TIGR02857 399 AWVPQHPFLFAG-TIAENIRLARPD-ASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRD 476 (529)
T ss_pred EEEcCCCcccCc-CHHHHHhccCCC-CCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcC
Confidence 999999998865 999999875321 1234566777777765443 345678999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067 157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~ 203 (229)
|+++||||||++||+.+.+.+.+.+.++. +++|+|++||+++.+..
T Consensus 477 ~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~ 522 (529)
T TIGR02857 477 APLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLALAER 522 (529)
T ss_pred CCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHHh
Confidence 99999999999999999999999998874 58999999999988754
No 276
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-44 Score=338.45 Aligned_cols=183 Identities=20% Similarity=0.378 Sum_probs=160.6
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|. ..++
T Consensus 318 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~------------~~i~ 385 (530)
T PRK15064 318 NALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN------------ANIG 385 (530)
T ss_pred ceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc------------eEEE
Confidence 4899999999999889999999999999999999999999999999999999999999999762 2589
Q ss_pred Eeecccc--cCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCC
Q 027067 89 WLSLKDA--VKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEP 165 (229)
Q Consensus 89 ~~~~~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEP 165 (229)
|++|++. +++.+|+.+|+.+..........+.++++.+++. +..++++.+|||||||||+|||||+.+|++||||||
T Consensus 386 ~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEP 465 (530)
T PRK15064 386 YYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEP 465 (530)
T ss_pred EEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999863 5567899999865321111223466789999994 678999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 166 SVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 166 t~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|++||+.+++.+.++++++ +.|||+||||++++..++|
T Consensus 466 t~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d 503 (530)
T PRK15064 466 TNHMDMESIESLNMALEKY---EGTLIFVSHDREFVSSLAT 503 (530)
T ss_pred CCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHhCC
Confidence 9999999999999998876 4599999999999998875
No 277
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.2e-44 Score=340.63 Aligned_cols=182 Identities=28% Similarity=0.376 Sum_probs=159.2
Q ss_pred CcEEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 9 PRLLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 9 ~~l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
++|+++||+++|+ ++++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+++. ..+
T Consensus 5 ~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~------------~~i 72 (556)
T PRK11819 5 YIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG------------IKV 72 (556)
T ss_pred EEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC------------CEE
Confidence 5899999999998 789999999999999999999999999999999999999999999998641 258
Q ss_pred eEeecccccCCCCCHHHhHHHHHH-h-------c------C-c--------------------------cccHHHHHHHh
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFEV-L-------E------G-K--------------------------QGNSLPALELM 126 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~~-~-------~------~-~--------------------------~~~~~~~l~~~ 126 (229)
+|++|++.+++.+|+.||+.+... . . . . ..++.++++.+
T Consensus 73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (556)
T PRK11819 73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL 152 (556)
T ss_pred EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence 999999999989999999975321 0 0 0 0 12345678888
Q ss_pred CCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 127 GLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 127 ~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|+.. .++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++++++. .|||+||||++++..++|
T Consensus 153 gl~~-~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd~~~~~~~~d 228 (556)
T PRK11819 153 RCPP-WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHDRYFLDNVAG 228 (556)
T ss_pred CCCc-ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCCHHHHHhhcC
Confidence 9864 689999999999999999999999999999999999999999999999998763 599999999999998775
No 278
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-44 Score=338.13 Aligned_cols=182 Identities=27% Similarity=0.367 Sum_probs=158.5
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW 89 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 89 (229)
||+++|++++|+++++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|. ..++|
T Consensus 1 ml~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~i~~ 68 (530)
T PRK15064 1 MLSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN------------ERLGK 68 (530)
T ss_pred CEEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC------------CEEEE
Confidence 589999999999889999999999999999999999999999999999999999999999862 24789
Q ss_pred eecccccCCCCCHHHhHHHHHH-h----------c--------------------------CccccHHHHHHHhCCChhh
Q 027067 90 LSLKDAVKEKFTVLDNVQWFEV-L----------E--------------------------GKQGNSLPALELMGLGRLA 132 (229)
Q Consensus 90 ~~~~~~~~~~~tv~e~l~~~~~-~----------~--------------------------~~~~~~~~~l~~~~l~~~~ 132 (229)
++|++.+++.+|+.||+.+... . . ....++.++++.+|+.+..
T Consensus 69 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~ 148 (530)
T PRK15064 69 LRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQ 148 (530)
T ss_pred EeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhH
Confidence 9999888889999999875311 0 0 0012345678899997644
Q ss_pred -cCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 133 -KEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 133 -~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+++.+ .|.|||+||||++++.+.+|
T Consensus 149 ~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~~~~~~~d 220 (530)
T PRK15064 149 HYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDRHFLNSVCT 220 (530)
T ss_pred hcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCHHHHHhhcc
Confidence 578999999999999999999999999999999999999999999998853 58899999999999988775
No 279
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.9e-45 Score=340.78 Aligned_cols=192 Identities=23% Similarity=0.364 Sum_probs=166.8
Q ss_pred CcEEEEeEEEEeCC---eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhh
Q 027067 9 PRLLLKNVSCMRNA---QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL 85 (229)
Q Consensus 9 ~~l~l~~l~~~~~~---~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 85 (229)
..++++||+|.|.. .++|+|+||+|+|||++|||||||+||||+.++|..+|.|++|+|.+||.|+.+.+. ..+++
T Consensus 464 G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~-~~lr~ 542 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINH-KYLRR 542 (716)
T ss_pred ceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCH-HHHHH
Confidence 46999999999965 469999999999999999999999999999999999999999999999999988764 45778
Q ss_pred cceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCC-----------ChhhcCCCCCCChhHHHHHHHHHHHh
Q 027067 86 QLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGL-----------GRLAKEKARMLSMGQRKRLQLARLLA 154 (229)
Q Consensus 86 ~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGqkqRv~lAral~ 154 (229)
+++++.|+|.+|.. |+.|||.|+.. ....+++..+.++.+- +.....+..+||||||||++|||||+
T Consensus 543 ~Ig~V~QEPvLFs~-sI~eNI~YG~~-~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALl 620 (716)
T KOG0058|consen 543 KIGLVGQEPVLFSG-SIRENIAYGLD-NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALL 620 (716)
T ss_pred Heeeeeccceeecc-cHHHHHhcCCC-CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHh
Confidence 99999999999876 99999998754 2233444444444333 33345678899999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067 155 IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA 204 (229)
Q Consensus 155 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~ 204 (229)
+||.||||||.||+||.++...+.+.+....+ ++|||++.|.++.++.+
T Consensus 621 r~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLSTV~~A 669 (716)
T KOG0058|consen 621 RNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLSTVRHA 669 (716)
T ss_pred cCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhhHhhhc
Confidence 99999999999999999999999999988754 59999999999999986
No 280
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-45 Score=332.89 Aligned_cols=190 Identities=31% Similarity=0.429 Sum_probs=166.9
Q ss_pred EEEEeEEEEeCCe-eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067 11 LLLKNVSCMRNAQ-QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW 89 (229)
Q Consensus 11 l~l~~l~~~~~~~-~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 89 (229)
++++|+++.|++. ++++|+||++++|+.++|+|+||||||||+++|+|+.+|++|+|.+||.+....+. ..++++++|
T Consensus 321 i~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~-~~~~k~i~~ 399 (559)
T COG4988 321 ISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSP-EAWRKQISW 399 (559)
T ss_pred eeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCH-HHHHhHeee
Confidence 5556999999654 99999999999999999999999999999999999999999999999999877653 467889999
Q ss_pred eecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcC----------CCCCCChhHHHHHHHHHHHhcCCCe
Q 027067 90 LSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKE----------KARMLSMGQRKRLQLARLLAIDRPI 159 (229)
Q Consensus 90 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~LSgGqkqRv~lAral~~~p~i 159 (229)
++|++.++.. |++||+.++... ..++++.++++..++.++.++ ....|||||+|||++||||+.++++
T Consensus 400 v~Q~p~lf~g-TireNi~l~~~~-~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l 477 (559)
T COG4988 400 VSQNPYLFAG-TIRENILLARPD-ASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASL 477 (559)
T ss_pred eCCCCccccc-cHHHHhhccCCc-CCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCE
Confidence 9999999887 999999886432 234567778888877665543 4566999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067 160 WLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA 204 (229)
Q Consensus 160 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~ 204 (229)
+|+||||++||.++.+.+.+.+.++.+ ++|+|++||++..+.++
T Consensus 478 ~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~~~~~~ 521 (559)
T COG4988 478 LLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLEDAADA 521 (559)
T ss_pred EEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChHHHhcC
Confidence 999999999999999999999999866 58999999999888775
No 281
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=4e-44 Score=368.47 Aligned_cols=195 Identities=25% Similarity=0.384 Sum_probs=175.3
Q ss_pred CcEEEEeEEEEeC--CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067 9 PRLLLKNVSCMRN--AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ 86 (229)
Q Consensus 9 ~~l~l~~l~~~~~--~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 86 (229)
+.|+++||++.|+ ++.+++|+||++.+||+++|+||||||||||+|+|+|+++|++|+|+++|+++... ....++.
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~--~~~~r~~ 1004 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETN--LDAVRQS 1004 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcch--HHHHhhc
Confidence 4799999999995 57899999999999999999999999999999999999999999999999998642 2334567
Q ss_pred ceEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEE
Q 027067 87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWL 161 (229)
Q Consensus 87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ill 161 (229)
++|++|++.+++.+||+||+.++....+. +.++.++++.+|+.+..++++.+|||||||||+||+||+.+|++||
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLL 1084 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVV 1084 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999999999999987654331 2345678999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 162 LDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 162 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|||||+|||+.+++.+.+++++++ +|+|||++||++++++..+|
T Consensus 1085 LDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmdea~~laD 1128 (2272)
T TIGR01257 1085 LDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMDEADLLGD 1128 (2272)
T ss_pred EECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCC
Confidence 999999999999999999999985 58999999999999988764
No 282
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=1.1e-44 Score=349.34 Aligned_cols=190 Identities=24% Similarity=0.357 Sum_probs=163.2
Q ss_pred cEEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 10 RLLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 10 ~l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
.++++||+++|+ ++++|+|+||+|++||.+||+||||||||||+|+|+|+++|++|+|++||.++...+. ..++.+++
T Consensus 473 ~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~-~~lr~~i~ 551 (708)
T TIGR01193 473 DIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDR-HTLRQFIN 551 (708)
T ss_pred cEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCH-HHHHHheE
Confidence 599999999996 4789999999999999999999999999999999999999999999999999876553 45678899
Q ss_pred EeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChh-----------hcCCCCCCChhHHHHHHHHHHHhcCC
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRL-----------AKEKARMLSMGQRKRLQLARLLAIDR 157 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqRv~lAral~~~p 157 (229)
|++|++.++.. |++||+.++.......++..++++..++.++ .......||||||||++||||++++|
T Consensus 552 ~v~Q~~~lf~g-TI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p 630 (708)
T TIGR01193 552 YLPQEPYIFSG-SILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDS 630 (708)
T ss_pred EEecCceehhH-HHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCC
Confidence 99999998876 9999998762111223455666776666443 33456789999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067 158 PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~ 203 (229)
++|||||||++||+.+.+.+.+.+..+ +++|+|+|||+++.+..
T Consensus 631 ~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~~~~~ 674 (708)
T TIGR01193 631 KVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLSVAKQ 674 (708)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchHHHHc
Confidence 999999999999999999999988875 47899999999988765
No 283
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1e-44 Score=349.54 Aligned_cols=188 Identities=26% Similarity=0.380 Sum_probs=162.3
Q ss_pred cEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 10 RLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 10 ~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
.++++||+++|++ +++|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|++||.++...+. ..+++++
T Consensus 477 ~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~-~~lr~~i 555 (710)
T TIGR03796 477 YVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPR-EVLANSV 555 (710)
T ss_pred eEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCH-HHHHhhe
Confidence 5999999999974 679999999999999999999999999999999999999999999999999876553 4567899
Q ss_pred eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhh-----------cCCCCCCChhHHHHHHHHHHHhcC
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLA-----------KEKARMLSMGQRKRLQLARLLAID 156 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral~~~ 156 (229)
+|++|++.++.. |++||+.++.. ....++..++++..++.++. ......||||||||++|||||+.+
T Consensus 556 ~~v~Q~~~lf~g-Ti~eNi~l~~~-~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~ 633 (710)
T TIGR03796 556 AMVDQDIFLFEG-TVRDNLTLWDP-TIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRN 633 (710)
T ss_pred eEEecCChhhhc-cHHHHhhCCCC-CCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhC
Confidence 999999998865 99999987532 12334566677776665443 345678999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067 157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~ 203 (229)
|++||||||||+||+.+.+.+.+.+.+ .++|+|+|||+++.+..
T Consensus 634 p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~i~~ 677 (710)
T TIGR03796 634 PSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLSTIRD 677 (710)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHHHHh
Confidence 999999999999999999998888865 48999999999988876
No 284
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=2.9e-44 Score=339.27 Aligned_cols=184 Identities=23% Similarity=0.258 Sum_probs=163.5
Q ss_pred CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
.++++++|+++.|++. .|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++ + .+
T Consensus 338 ~~~l~~~~ls~~~~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~---~-----------~i 402 (590)
T PRK13409 338 ETLVEYPDLTKKLGDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE---L-----------KI 402 (590)
T ss_pred ceEEEEcceEEEECCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe---e-----------eE
Confidence 3579999999999875 4999999999999999999999999999999999999999999884 1 47
Q ss_pred eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCC
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSV 167 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~ 167 (229)
+|++|+..+++.+||.||+.+............++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 403 ~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~ 482 (590)
T PRK13409 403 SYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSA 482 (590)
T ss_pred EEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 89999888888899999998643221122245678999999988999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 168 ALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 168 ~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
+||+.+++.+.++|+++.++ |+|||+||||++++...+|
T Consensus 483 ~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aD 522 (590)
T PRK13409 483 HLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISD 522 (590)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence 99999999999999998664 8999999999999988765
No 285
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-44 Score=328.97 Aligned_cols=186 Identities=20% Similarity=0.313 Sum_probs=159.3
Q ss_pred CCcEEEEeEEEEeCC---eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhh
Q 027067 8 LPRLLLKNVSCMRNA---QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK 84 (229)
Q Consensus 8 ~~~l~l~~l~~~~~~---~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~ 84 (229)
.++++++||+++|++ +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|+++|.+..
T Consensus 19 ~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~--------- 89 (549)
T PRK13545 19 KPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAAL--------- 89 (549)
T ss_pred cceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeee---------
Confidence 358999999999976 46999999999999999999999999999999999999999999999997521
Q ss_pred hcceEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCe
Q 027067 85 LQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPI 159 (229)
Q Consensus 85 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~i 159 (229)
+.....+.+.+|+.||+.+....... ...+.++++.+++.+..++++.+||||||||++|||||+.+|++
T Consensus 90 -----i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~L 164 (549)
T PRK13545 90 -----IAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDI 164 (549)
T ss_pred -----EEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCE
Confidence 11122345668999999764332211 12244678899999889999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067 160 WLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 160 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~ 207 (229)
|||||||++||+.+++.+.+++.+++++|.|||++||+++++..++|.
T Consensus 165 LLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~Dr 212 (549)
T PRK13545 165 LVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTK 212 (549)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCE
Confidence 999999999999999999999999887799999999999999887753
No 286
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=1.1e-44 Score=341.37 Aligned_cols=191 Identities=28% Similarity=0.440 Sum_probs=163.9
Q ss_pred cEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 10 RLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 10 ~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
.++++||+++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++...+. ..++..+
T Consensus 330 ~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~-~~~~~~i 408 (571)
T TIGR02203 330 DVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTL-ASLRRQV 408 (571)
T ss_pred eEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCH-HHHHhhc
Confidence 5999999999964 679999999999999999999999999999999999999999999999999876553 3467789
Q ss_pred eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcC-----------CCCCCChhHHHHHHHHHHHhcC
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKE-----------KARMLSMGQRKRLQLARLLAID 156 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGqkqRv~lAral~~~ 156 (229)
+|++|++.++.. |++||+.++......+++..++++.+++.++..+ ....||||||||++||||++.+
T Consensus 409 ~~v~Q~~~lf~~-Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~ 487 (571)
T TIGR02203 409 ALVSQDVVLFND-TIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKD 487 (571)
T ss_pred eEEccCcccccc-cHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 999999988866 9999998763211234456777888777654433 3467999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067 157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~ 203 (229)
|+++||||||++||..+.+.+.+.+.++. +++|+|+|||+++.+..
T Consensus 488 ~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~~~~~ 533 (571)
T TIGR02203 488 APILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLSTIEK 533 (571)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhHHHHh
Confidence 99999999999999999999999998874 47999999999977654
No 287
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=3.9e-44 Score=328.91 Aligned_cols=198 Identities=23% Similarity=0.322 Sum_probs=167.6
Q ss_pred CcEEEEeEEEEeCC----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCC----ccEEEEcCEeCCCCchh
Q 027067 9 PRLLLKNVSCMRNA----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPS----AGEILWNGHDITQSGIF 80 (229)
Q Consensus 9 ~~l~l~~l~~~~~~----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~----~G~I~~~g~~~~~~~~~ 80 (229)
++|+++||++.|.. ..+++||||+|.+||++||+|+|||||||+.++|.|++++. +|+|.|+|+++......
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 48999999999853 36999999999999999999999999999999999999987 79999999987665431
Q ss_pred ---hhhhhcceEeeccc--ccCCCCCHHHhHHHHHHhcC------ccccHHHHHHHhCCChhhc--CCCCCCChhHHHHH
Q 027067 81 ---HQYKLQLNWLSLKD--AVKEKFTVLDNVQWFEVLEG------KQGNSLPALELMGLGRLAK--EKARMLSMGQRKRL 147 (229)
Q Consensus 81 ---~~~~~~~~~~~~~~--~~~~~~tv~e~l~~~~~~~~------~~~~~~~~l~~~~l~~~~~--~~~~~LSgGqkqRv 147 (229)
......+++++|++ .+.|.+|+.+.+.-...... ...++.++|+.+|+.+... ++|++|||||||||
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv 163 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRV 163 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHH
Confidence 12346799999986 46676888777654322221 2345678899999975544 59999999999999
Q ss_pred HHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEeCChhhHHhhhc
Q 027067 148 QLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHR-KKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 148 ~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~-~~g~tii~vtH~~~~~~~~~~ 206 (229)
.||+||+.+|++||+||||++||+..+..+.++|++++ +.|.++|+||||+..+.+.+|
T Consensus 164 ~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aD 223 (539)
T COG1123 164 MIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELAD 223 (539)
T ss_pred HHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcC
Confidence 99999999999999999999999999999999999986 559999999999999999875
No 288
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=2.3e-44 Score=346.44 Aligned_cols=192 Identities=29% Similarity=0.425 Sum_probs=165.2
Q ss_pred CcEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067 9 PRLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ 86 (229)
Q Consensus 9 ~~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 86 (229)
..++++||+++|++ +++|+|+||+|++||.++|+|+||||||||+|+|+|+++|++|+|.+||.++...+. ..++.+
T Consensus 462 ~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~-~~lr~~ 540 (694)
T TIGR03375 462 GEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDP-ADLRRN 540 (694)
T ss_pred ceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCH-HHHHhc
Confidence 35999999999963 579999999999999999999999999999999999999999999999999987654 456789
Q ss_pred ceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhh-----------cCCCCCCChhHHHHHHHHHHHhc
Q 027067 87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLA-----------KEKARMLSMGQRKRLQLARLLAI 155 (229)
Q Consensus 87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral~~ 155 (229)
++|++|++.++.. |++||+.++.. ....++..++++.+++.++. ......||||||||++|||||+.
T Consensus 541 i~~v~Q~~~lf~~-TI~eNi~~~~~-~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~ 618 (694)
T TIGR03375 541 IGYVPQDPRLFYG-TLRDNIALGAP-YADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLR 618 (694)
T ss_pred cEEECCChhhhhh-hHHHHHhCCCC-CCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhc
Confidence 9999999998876 99999987532 12334556677776665443 34557899999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067 156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA 204 (229)
Q Consensus 156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~ 204 (229)
+|++||||||||+||+++.+.+.+.+.++. +++|+|+|||+++.+..+
T Consensus 619 ~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~~~~~~ 666 (694)
T TIGR03375 619 DPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTSLLDLV 666 (694)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHhC
Confidence 999999999999999999999999998875 479999999999887653
No 289
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=3.5e-44 Score=339.32 Aligned_cols=190 Identities=25% Similarity=0.364 Sum_probs=162.5
Q ss_pred cEEEEeEEEEeCC-eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 10 RLLLKNVSCMRNA-QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 10 ~l~l~~l~~~~~~-~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
.++++||+++|++ +++|+|+||++++||+++|+|+||||||||+|+|+|+++|++|+|+++|.++...+. ..++..++
T Consensus 334 ~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~-~~~r~~i~ 412 (588)
T PRK13657 334 AVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTR-ASLRRNIA 412 (588)
T ss_pred eEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCH-HHHHhheE
Confidence 5999999999965 679999999999999999999999999999999999999999999999999987653 45677899
Q ss_pred EeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChh-----------hcCCCCCCChhHHHHHHHHHHHhcCC
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRL-----------AKEKARMLSMGQRKRLQLARLLAIDR 157 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqRv~lAral~~~p 157 (229)
|++|++.++.. |++||+.++.. ...+++..++++.+++.++ .......||||||||++|||||+.+|
T Consensus 413 ~v~Q~~~lf~~-Ti~~Ni~~~~~-~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~ 490 (588)
T PRK13657 413 VVFQDAGLFNR-SIEDNIRVGRP-DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDP 490 (588)
T ss_pred EEecCcccccc-cHHHHHhcCCC-CCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999998865 99999987532 1123445566666665433 33445679999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067 158 PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~ 203 (229)
+++|||||||+||+.+.+.+.+.+..+. +++|+|+|||+++.+..
T Consensus 491 ~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~~~~~ 535 (588)
T PRK13657 491 PILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLSTVRN 535 (588)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHHHHHh
Confidence 9999999999999999999999888764 47999999999988764
No 290
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=3.1e-44 Score=306.19 Aligned_cols=171 Identities=23% Similarity=0.288 Sum_probs=146.8
Q ss_pred eeeeeeeeEEEe-----CCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccC
Q 027067 23 QQILRHVNISIH-----DGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVK 97 (229)
Q Consensus 23 ~~iL~~vsl~i~-----~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (229)
.+.+++++|++. +||+++|+||||||||||+++|+|+++|++|+|.++|. .++|++|+....
T Consensus 7 ~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~-------------~i~~~~q~~~~~ 73 (246)
T cd03237 7 KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD-------------TVSYKPQYIKAD 73 (246)
T ss_pred ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc-------------eEEEecccccCC
Confidence 345666676665 79999999999999999999999999999999999874 467888887777
Q ss_pred CCCCHHHhHHHHHHhcC-ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHH
Q 027067 98 EKFTVLDNVQWFEVLEG-KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRL 176 (229)
Q Consensus 98 ~~~tv~e~l~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~ 176 (229)
...|+.|++.+...... ......++++.+++.+..++++.+|||||||||+|||||+.+|+++||||||++||+.+++.
T Consensus 74 ~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~ 153 (246)
T cd03237 74 YEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLM 153 (246)
T ss_pred CCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 77899999875432111 12235678899999988999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067 177 LEYIIAEHRK-KGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 177 l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~ 206 (229)
+.++++++++ .++|||+||||++++...+|
T Consensus 154 l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d 184 (246)
T cd03237 154 ASKVIRRFAENNEKTAFVVEHDIIMIDYLAD 184 (246)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 9999999865 48999999999999988765
No 291
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=2.8e-44 Score=346.63 Aligned_cols=190 Identities=24% Similarity=0.351 Sum_probs=160.4
Q ss_pred CcEEEEeEEEEeCC---eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhh
Q 027067 9 PRLLLKNVSCMRNA---QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL 85 (229)
Q Consensus 9 ~~l~l~~l~~~~~~---~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 85 (229)
..++++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++..... ..++.
T Consensus 477 ~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~-~~lr~ 555 (711)
T TIGR00958 477 GLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDH-HYLHR 555 (711)
T ss_pred CeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCH-HHHHh
Confidence 35999999999964 579999999999999999999999999999999999999999999999999976543 45677
Q ss_pred cceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhh-----------cCCCCCCChhHHHHHHHHHHHh
Q 027067 86 QLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLA-----------KEKARMLSMGQRKRLQLARLLA 154 (229)
Q Consensus 86 ~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral~ 154 (229)
+++|++|++.++.. |++||+.++... ..+++..++++.+++.++. .....+||||||||++||||++
T Consensus 556 ~i~~v~Q~~~lF~g-TIreNI~~g~~~-~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl 633 (711)
T TIGR00958 556 QVALVGQEPVLFSG-SVRENIAYGLTD-TPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALV 633 (711)
T ss_pred hceEEecCcccccc-CHHHHHhcCCCC-CCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHh
Confidence 89999999998865 999999876321 1234566677777765443 3345689999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067 155 IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA 204 (229)
Q Consensus 155 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~ 204 (229)
++|+|||||||||+||+++.+.+.+ .. ..+++|+|+|||+++.++.+
T Consensus 634 ~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~~i~~a 680 (711)
T TIGR00958 634 RKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLSTVERA 680 (711)
T ss_pred cCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHHHHHhC
Confidence 9999999999999999999888887 22 23578999999999887653
No 292
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-43 Score=304.25 Aligned_cols=183 Identities=20% Similarity=0.292 Sum_probs=154.7
Q ss_pred cEEEEeEEEEeC--------------------CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEE
Q 027067 10 RLLLKNVSCMRN--------------------AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW 69 (229)
Q Consensus 10 ~l~l~~l~~~~~--------------------~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~ 69 (229)
.++++||++.|. .+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 578899987652 235999999999999999999999999999999999999999999999
Q ss_pred cCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHHhcCc-c----ccHHHHHHHhCCChhhcCCCCCCChhHH
Q 027067 70 NGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK-Q----GNSLPALELMGLGRLAKEKARMLSMGQR 144 (229)
Q Consensus 70 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-~----~~~~~~l~~~~l~~~~~~~~~~LSgGqk 144 (229)
+|.. +++++...+.+.+|+.+|+.+....... . .....+++.+++.+..++++.+||+||+
T Consensus 84 ~g~~--------------~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~ 149 (264)
T PRK13546 84 NGEV--------------SVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMR 149 (264)
T ss_pred CCEE--------------eEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHH
Confidence 9852 2233444456678999999764332211 1 1234567788998889999999999999
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 145 KRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 145 qRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|||+||||++.+|++|||||||++||+.+++.+.+++.++++.|.|||++||+++++.+++|
T Consensus 150 qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d 211 (264)
T PRK13546 150 AKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCT 211 (264)
T ss_pred HHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcC
Confidence 99999999999999999999999999999999999999987779999999999999988776
No 293
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=8e-44 Score=334.20 Aligned_cols=192 Identities=29% Similarity=0.443 Sum_probs=161.9
Q ss_pred CcEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067 9 PRLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ 86 (229)
Q Consensus 9 ~~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 86 (229)
..++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... ..++..
T Consensus 315 ~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~-~~~~~~ 393 (544)
T TIGR01842 315 GHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDR-ETFGKH 393 (544)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCH-HHHhhh
Confidence 35999999999953 689999999999999999999999999999999999999999999999999876543 346778
Q ss_pred ceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHH---------h--CCChhhcCCCCCCChhHHHHHHHHHHHhc
Q 027067 87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALEL---------M--GLGRLAKEKARMLSMGQRKRLQLARLLAI 155 (229)
Q Consensus 87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~---------~--~l~~~~~~~~~~LSgGqkqRv~lAral~~ 155 (229)
++|++|++.+++. |++||+.++... ...++..++++. + |++....+...+||||||||++||||++.
T Consensus 394 i~~v~q~~~lf~~-ti~~Ni~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~ 471 (544)
T TIGR01842 394 IGYLPQDVELFPG-TVAENIARFGEN-ADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYG 471 (544)
T ss_pred eEEecCCcccccc-cHHHHHhccCCC-CCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhc
Confidence 9999999998876 999999854311 112223333333 3 44445566788999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067 156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~ 203 (229)
+|++|||||||++||+.+++.+.+.+.++..+++|+|++||+++.++.
T Consensus 472 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~ 519 (544)
T TIGR01842 472 DPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGC 519 (544)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHh
Confidence 999999999999999999999999998886668999999999987653
No 294
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=9.3e-44 Score=334.34 Aligned_cols=185 Identities=24% Similarity=0.335 Sum_probs=161.0
Q ss_pred CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
.++++++|++++|+++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|++++ + ..+
T Consensus 320 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~-----------~~i 387 (552)
T TIGR03719 320 DKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T-----------VKL 387 (552)
T ss_pred CeEEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c-----------eEE
Confidence 3689999999999988999999999999999999999999999999999999999999999843 1 148
Q ss_pred eEeeccc-ccCCCCCHHHhHHHHHHhcC---ccccHHHHHHHhCCCh-hhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067 88 NWLSLKD-AVKEKFTVLDNVQWFEVLEG---KQGNSLPALELMGLGR-LAKEKARMLSMGQRKRLQLARLLAIDRPIWLL 162 (229)
Q Consensus 88 ~~~~~~~-~~~~~~tv~e~l~~~~~~~~---~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~~p~illl 162 (229)
+|++|++ .+++.+|+.||+.+...... ......++++.+++.. ..++++.+|||||||||+|||||+.+|++|||
T Consensus 388 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllL 467 (552)
T TIGR03719 388 AYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLL 467 (552)
T ss_pred EEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 9999986 47888999999987532111 1223457889999964 57999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067 163 DEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 163 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~ 207 (229)
||||++||+.+++.+.++|.++. .|||+||||++++...+|.
T Consensus 468 DEPt~~LD~~~~~~l~~~l~~~~---~~viivsHd~~~~~~~~d~ 509 (552)
T TIGR03719 468 DEPTNDLDVETLRALEEALLEFA---GCAVVISHDRWFLDRIATH 509 (552)
T ss_pred eCCCCCCCHHHHHHHHHHHHHCC---CeEEEEeCCHHHHHHhCCE
Confidence 99999999999999999998873 4899999999999887653
No 295
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=5.4e-44 Score=336.79 Aligned_cols=192 Identities=28% Similarity=0.414 Sum_probs=166.1
Q ss_pred CcEEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 9 PRLLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 9 ~~l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
..++++||++.|+ ++++|+|+||++++||.+||+||||||||||+++|+|+++|++|+|.+||+++...+. ..++.++
T Consensus 327 ~~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~-~~lr~~I 405 (567)
T COG1132 327 GSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISL-DSLRKRI 405 (567)
T ss_pred CeEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCH-HHHHHhc
Confidence 3499999999998 6899999999999999999999999999999999999999999999999999987654 4578899
Q ss_pred eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhC-----------CChhhcCCCCCCChhHHHHHHHHHHHhcC
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMG-----------LGRLAKEKARMLSMGQRKRLQLARLLAID 156 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgGqkqRv~lAral~~~ 156 (229)
++++|++.+|. -|++||+.++... ..++++.++++..+ ++.........||||||||++||||++.+
T Consensus 406 ~~V~Qd~~LF~-~TI~~NI~~g~~~-at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~ 483 (567)
T COG1132 406 GIVSQDPLLFS-GTIRENIALGRPD-ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRN 483 (567)
T ss_pred cEEcccceeec-ccHHHHHhcCCCC-CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence 99999999988 5999999987432 12334555555443 44444556679999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067 157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA 204 (229)
Q Consensus 157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~ 204 (229)
|++||||||||+||..+...+.+.+.++. +++|+|+|+|+++.+.++
T Consensus 484 ~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlsti~~a 530 (567)
T COG1132 484 PPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLSTIKNA 530 (567)
T ss_pred CCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhHHHhC
Confidence 99999999999999999999999998776 568999999999998884
No 296
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.3e-43 Score=333.69 Aligned_cols=185 Identities=25% Similarity=0.346 Sum_probs=161.5
Q ss_pred CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
.++|+++||++.|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|++++ + ..+
T Consensus 322 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~-----------~~i 389 (556)
T PRK11819 322 DKVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T-----------VKL 389 (556)
T ss_pred CeEEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c-----------eEE
Confidence 3589999999999999999999999999999999999999999999999999999999999843 1 148
Q ss_pred eEeeccc-ccCCCCCHHHhHHHHHHhcC---ccccHHHHHHHhCCCh-hhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067 88 NWLSLKD-AVKEKFTVLDNVQWFEVLEG---KQGNSLPALELMGLGR-LAKEKARMLSMGQRKRLQLARLLAIDRPIWLL 162 (229)
Q Consensus 88 ~~~~~~~-~~~~~~tv~e~l~~~~~~~~---~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~~p~illl 162 (229)
+|++|+. .+++.+|+.||+.+...... .......+++.+++.. ..++++.+|||||||||+||||++.+|++|||
T Consensus 390 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllL 469 (556)
T PRK11819 390 AYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLL 469 (556)
T ss_pred EEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999986 67888999999986532111 1223456899999964 57999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067 163 DEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 163 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~ 207 (229)
||||+|||+.+++.+.++|.++. .|||+||||++++...+|.
T Consensus 470 DEPt~~LD~~~~~~l~~~l~~~~---~tvi~vtHd~~~~~~~~d~ 511 (556)
T PRK11819 470 DEPTNDLDVETLRALEEALLEFP---GCAVVISHDRWFLDRIATH 511 (556)
T ss_pred cCCCCCCCHHHHHHHHHHHHhCC---CeEEEEECCHHHHHHhCCE
Confidence 99999999999999999998873 4899999999999988763
No 297
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=6.9e-44 Score=335.21 Aligned_cols=182 Identities=27% Similarity=0.349 Sum_probs=156.8
Q ss_pred CcEEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 9 PRLLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 9 ~~l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
++++++||+++|+ ++++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+++. ..+
T Consensus 3 ~~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~------------~~i 70 (552)
T TIGR03719 3 YIYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPG------------IKV 70 (552)
T ss_pred EEEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC------------CEE
Confidence 5899999999998 788999999999999999999999999999999999999999999998641 258
Q ss_pred eEeecccccCCCCCHHHhHHHHHHh---------------cC-cc-------------------------ccHHHHHHHh
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFEVL---------------EG-KQ-------------------------GNSLPALELM 126 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~~~---------------~~-~~-------------------------~~~~~~l~~~ 126 (229)
+|++|++.+++.+|+.||+.+.... .. .. .++.++++.+
T Consensus 71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 9999999998999999999763210 00 00 1223456677
Q ss_pred CCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 127 GLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 127 ~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
++.. .++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+++.++ +.|||+||||++.+..++|
T Consensus 151 ~l~~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~~~~~~~~d 226 (552)
T TIGR03719 151 RCPP-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDRYFLDNVAG 226 (552)
T ss_pred CCCc-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCHHHHHhhcC
Confidence 7753 58899999999999999999999999999999999999999999999998776 3599999999999998775
No 298
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.6e-44 Score=282.49 Aligned_cols=196 Identities=25% Similarity=0.348 Sum_probs=172.7
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCC-----chhhhhh
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQS-----GIFHQYK 84 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~-----~~~~~~~ 84 (229)
.|+++|+++.||..++|.||+|+.+.||.+.++||||||||||+|.+.=+.-|.+|+..+.|...... ....+.+
T Consensus 2 sirv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr 81 (242)
T COG4161 2 SIQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLR 81 (242)
T ss_pred ceEEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999987653211 1234567
Q ss_pred hcceEeecccccCCCCCHHHhHHHHH-HhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCC
Q 027067 85 LQLNWLSLKDAVKEKFTVLDNVQWFE-VLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRP 158 (229)
Q Consensus 85 ~~~~~~~~~~~~~~~~tv~e~l~~~~-~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 158 (229)
+.+|+++|+..++|.+||.||+.-.. ...+ ...++.++++++.+.++.|+.|-.|||||+|||+|||||+++|+
T Consensus 82 ~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpq 161 (242)
T COG4161 82 RNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQ 161 (242)
T ss_pred HhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCc
Confidence 88999999999999999999986432 2211 12356788999999999999999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhh
Q 027067 159 IWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAM 205 (229)
Q Consensus 159 illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~ 205 (229)
+|++||||++|||+-...+.++++++.+.|.|-++|||..+......
T Consensus 162 vllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~a 208 (242)
T COG4161 162 VLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTA 208 (242)
T ss_pred EEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhh
Confidence 99999999999999888999999999999999999999988877754
No 299
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=5e-44 Score=306.40 Aligned_cols=191 Identities=23% Similarity=0.248 Sum_probs=157.1
Q ss_pred EeEEEEeCCe-eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEE-----------EcCEeCCCCchh-
Q 027067 14 KNVSCMRNAQ-QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEIL-----------WNGHDITQSGIF- 80 (229)
Q Consensus 14 ~~l~~~~~~~-~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~-----------~~g~~~~~~~~~- 80 (229)
.||+++|+++ .+|+|+|+ +++||+++|+||||||||||+|+|+|+++|++|+|+ ++|+++......
T Consensus 4 ~~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82 (255)
T ss_pred cCcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence 4789999765 59999994 999999999999999999999999999999999996 777776432110
Q ss_pred hhhhhcceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeE
Q 027067 81 HQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIW 160 (229)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~il 160 (229)
......++|+++...+++. ++.+++..............++++.+++.+..++.+.+||+|||||++||||++.+|+++
T Consensus 83 ~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~il 161 (255)
T cd03236 83 LEGDVKVIVKPQYVDLIPK-AVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFY 161 (255)
T ss_pred hhcccceeeecchhccCch-HHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 0111236777777666663 666766543211112345678899999998899999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 161 LLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 161 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
||||||++||+.+++.+.+++++++++++|||++||+++.+..++|
T Consensus 162 llDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad 207 (255)
T cd03236 162 FFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSD 207 (255)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCC
Confidence 9999999999999999999999988778999999999999988765
No 300
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=6.3e-44 Score=299.87 Aligned_cols=171 Identities=29% Similarity=0.354 Sum_probs=147.6
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCC--CCCHHHhHHH
Q 027067 31 ISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKE--KFTVLDNVQW 108 (229)
Q Consensus 31 l~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~tv~e~l~~ 108 (229)
|+|++||+++|+|+||||||||+++|+|+++|++|+|+++|+++.. .+..++|++|++.++. ..|+.+|+.+
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~------~~~~i~~v~q~~~~~~~~~~tv~~~l~~ 74 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGK------GWRHIGYVPQRHEFAWDFPISVAHTVMS 74 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchH------hhCcEEEecccccccCCCCccHHHHHHh
Confidence 5789999999999999999999999999999999999999987531 2457899999877643 4689999876
Q ss_pred HHH-----hc-C---ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q 027067 109 FEV-----LE-G---KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEY 179 (229)
Q Consensus 109 ~~~-----~~-~---~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~ 179 (229)
... .. . ....+.++++.+++.+..++++.+|||||||||+|||||+.+|+++||||||++||+.+++.+.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~ 154 (223)
T TIGR03771 75 GRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTE 154 (223)
T ss_pred ccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 421 00 0 11235678899999988899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067 180 IIAEHRKKGGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 180 ~l~~~~~~g~tii~vtH~~~~~~~~~~~ 207 (229)
++.+++++|.|+|++||+++++.+++|.
T Consensus 155 ~l~~~~~~~~tvii~sH~~~~~~~~~d~ 182 (223)
T TIGR03771 155 LFIELAGAGTAILMTTHDLAQAMATCDR 182 (223)
T ss_pred HHHHHHHcCCEEEEEeCCHHHHHHhCCE
Confidence 9999887799999999999999888763
No 301
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=2e-43 Score=336.89 Aligned_cols=184 Identities=25% Similarity=0.419 Sum_probs=160.3
Q ss_pred CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
.++|+++||+++|+++++|+++||+|.+|++++|+||||||||||||+|+|+++|++|+|++ |.++ .+
T Consensus 317 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~-----------~i 384 (635)
T PRK11147 317 KIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL-----------EV 384 (635)
T ss_pred CceEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc-----------EE
Confidence 45899999999999999999999999999999999999999999999999999999999998 4321 47
Q ss_pred eEeeccc-ccCCCCCHHHhHHHHHHh---cCccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067 88 NWLSLKD-AVKEKFTVLDNVQWFEVL---EGKQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARLLAIDRPIWLL 162 (229)
Q Consensus 88 ~~~~~~~-~~~~~~tv~e~l~~~~~~---~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~illl 162 (229)
+|++|+. .+++.+||.||+.+.... ......+.+++..+++. +..++++.+|||||||||+|||||+.+|++|||
T Consensus 385 ~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlL 464 (635)
T PRK11147 385 AYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLIL 464 (635)
T ss_pred EEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 8999875 578889999999764211 11123456778889995 568999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 163 DEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 163 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
||||++||+.+++.+.++++++ +.|||+||||.+++..+++
T Consensus 465 DEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~~~~~~~d 505 (635)
T PRK11147 465 DEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQFVDNTVT 505 (635)
T ss_pred cCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHHHHHHhcC
Confidence 9999999999999999998776 4599999999999988775
No 302
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=1.6e-43 Score=333.73 Aligned_cols=190 Identities=25% Similarity=0.403 Sum_probs=161.8
Q ss_pred cEEEEeEEEEeCC---eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067 10 RLLLKNVSCMRNA---QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ 86 (229)
Q Consensus 10 ~l~l~~l~~~~~~---~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 86 (229)
.++++||+++|++ +.+|+|+||++++||.++|+|+||||||||+|+|+|+++|++|+|+++|.++..... ..++.+
T Consensus 337 ~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~-~~~~~~ 415 (576)
T TIGR02204 337 EIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDP-AELRAR 415 (576)
T ss_pred eEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCH-HHHHHh
Confidence 5999999999964 579999999999999999999999999999999999999999999999999876543 346678
Q ss_pred ceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhh-----------cCCCCCCChhHHHHHHHHHHHhc
Q 027067 87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLA-----------KEKARMLSMGQRKRLQLARLLAI 155 (229)
Q Consensus 87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral~~ 155 (229)
++|++|++.+++. |++||+.++... ...++..++++.+++.+.. ......||||||||++||||++.
T Consensus 416 i~~~~Q~~~lf~~-Ti~~Ni~~~~~~-~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~ 493 (576)
T TIGR02204 416 MALVPQDPVLFAA-SVMENIRYGRPD-ATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILK 493 (576)
T ss_pred ceEEccCCccccc-cHHHHHhcCCCC-CCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHh
Confidence 9999999988866 999999875321 1234455666666654332 34556899999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067 156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~ 203 (229)
+|++||||||||+||+.+++.+.+.+..+. +++|+|++||+++.+..
T Consensus 494 ~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~~~~~ 540 (576)
T TIGR02204 494 DAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLATVLK 540 (576)
T ss_pred CCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchHHHHh
Confidence 999999999999999999999999998874 47999999999988764
No 303
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.3e-44 Score=323.27 Aligned_cols=191 Identities=29% Similarity=0.437 Sum_probs=166.8
Q ss_pred CcEEEEeEEEEeCCee-eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 9 PRLLLKNVSCMRNAQQ-ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~-iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
..++++||+++|+.++ +|+++||+|++||.+||+|+|||||||++|+|.+++. ++|+|++||+++..... ...++-+
T Consensus 350 ~~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~-~SlR~~I 427 (591)
T KOG0057|consen 350 GSIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSL-ESLRQSI 427 (591)
T ss_pred CcEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhCh-HHhhhhe
Confidence 4599999999998776 9999999999999999999999999999999999999 99999999999987653 4567889
Q ss_pred eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChh-----------hcCCCCCCChhHHHHHHHHHHHhcC
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRL-----------AKEKARMLSMGQRKRLQLARLLAID 156 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqRv~lAral~~~ 156 (229)
+++||+..+|.+ |+..|+.++... ...+++.++.++.++.+. ...+...|||||||||+||||++.+
T Consensus 428 g~VPQd~~LFnd-TIl~NI~YGn~s-as~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKd 505 (591)
T KOG0057|consen 428 GVVPQDSVLFND-TILYNIKYGNPS-ASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKD 505 (591)
T ss_pred eEeCCcccccch-hHHHHhhcCCCC-cCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcC
Confidence 999999988876 999999986532 234556677777777543 3456778999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067 157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA 204 (229)
Q Consensus 157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~ 204 (229)
|+|+++|||||+||.++...+.+.+.. ...++|+|+|-|+++.+.++
T Consensus 506 a~Il~~DEaTS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l~ll~~~ 552 (591)
T KOG0057|consen 506 APILLLDEATSALDSETEREILDMIMD-VMSGRTVIMIVHRLDLLKDF 552 (591)
T ss_pred CCeEEecCcccccchhhHHHHHHHHHH-hcCCCeEEEEEecchhHhcC
Confidence 999999999999999999988888877 45689999999999988875
No 304
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.4e-43 Score=338.35 Aligned_cols=189 Identities=25% Similarity=0.354 Sum_probs=162.3
Q ss_pred EEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCC--ccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067 13 LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPS--AGEILWNGHDITQSGIFHQYKLQLNWL 90 (229)
Q Consensus 13 l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~--~G~I~~~g~~~~~~~~~~~~~~~~~~~ 90 (229)
.+|++++|+++.+|+|+|+++++||++||+|||||||||||++|+|..+|+ +|+|.++|+++.. ...++++|+
T Consensus 71 ~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~-----~~~~~i~yv 145 (659)
T PLN03211 71 ISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK-----QILKRTGFV 145 (659)
T ss_pred cccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch-----hhccceEEE
Confidence 455666777888999999999999999999999999999999999999885 8999999998742 233568999
Q ss_pred ecccccCCCCCHHHhHHHHHHhcC----c----cccHHHHHHHhCCChhhc-----CCCCCCChhHHHHHHHHHHHhcCC
Q 027067 91 SLKDAVKEKFTVLDNVQWFEVLEG----K----QGNSLPALELMGLGRLAK-----EKARMLSMGQRKRLQLARLLAIDR 157 (229)
Q Consensus 91 ~~~~~~~~~~tv~e~l~~~~~~~~----~----~~~~~~~l~~~~l~~~~~-----~~~~~LSgGqkqRv~lAral~~~p 157 (229)
+|++.+++.+||+||+.+...... . ...+.++++.+||.+..+ +.+.+|||||||||+||++|+.+|
T Consensus 146 ~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P 225 (659)
T PLN03211 146 TQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINP 225 (659)
T ss_pred CcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCC
Confidence 999999999999999988653321 1 123456888999977654 457789999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChh-hHHhhhc
Q 027067 158 PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPI-QIEDAMN 206 (229)
Q Consensus 158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~~ 206 (229)
++|+|||||+|||..++..+.+++++++++|+|||++||+++ ++.+.+|
T Consensus 226 ~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D 275 (659)
T PLN03211 226 SLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFD 275 (659)
T ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhc
Confidence 999999999999999999999999999878999999999998 4666654
No 305
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=3.1e-43 Score=332.77 Aligned_cols=190 Identities=22% Similarity=0.330 Sum_probs=160.8
Q ss_pred cEEEEeEEEEeCC-eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 10 RLLLKNVSCMRNA-QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 10 ~l~l~~l~~~~~~-~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
.++++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+. ..++..++
T Consensus 334 ~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~-~~~~~~i~ 412 (585)
T TIGR01192 334 AVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTR-ESLRKSIA 412 (585)
T ss_pred eEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCH-HHHHhheE
Confidence 5999999999975 679999999999999999999999999999999999999999999999999876543 34667899
Q ss_pred EeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHh-----------CCChhhcCCCCCCChhHHHHHHHHHHHhcCC
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELM-----------GLGRLAKEKARMLSMGQRKRLQLARLLAIDR 157 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 157 (229)
|++|++.++. .|++||+.++... ...++..++++.. |++....+.+..||||||||++|||||+.+|
T Consensus 413 ~v~q~~~lf~-~ti~~Ni~~~~~~-~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p 490 (585)
T TIGR01192 413 TVFQDAGLFN-RSIRENIRLGREG-ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNA 490 (585)
T ss_pred EEccCCccCc-ccHHHHHhcCCCC-CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 9999998886 5999999875321 1122333334333 3444455678899999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067 158 PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~ 203 (229)
++|||||||++||+.+++.+.+.+.++. +++|+|++||+++.+..
T Consensus 491 ~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~~~~~ 535 (585)
T TIGR01192 491 PILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLSTVRN 535 (585)
T ss_pred CEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChHHHHc
Confidence 9999999999999999999999998874 48999999999988865
No 306
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=1.1e-42 Score=332.40 Aligned_cols=195 Identities=26% Similarity=0.366 Sum_probs=171.3
Q ss_pred CcEEEEeEEEEeCC----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhh--
Q 027067 9 PRLLLKNVSCMRNA----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQ-- 82 (229)
Q Consensus 9 ~~l~l~~l~~~~~~----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~-- 82 (229)
++|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++........
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHH
Confidence 48999999999953 579999999999999999999999999999999999999999999999999876442211
Q ss_pred -hhhcceEeecccccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcC
Q 027067 83 -YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAID 156 (229)
Q Consensus 83 -~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 156 (229)
.++.++|++|++.+++.+|+.||+.+.....+ ...++.++++.+++.+..++.+.+||+||+||++|||||+.+
T Consensus 83 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~ 162 (648)
T PRK10535 83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNG 162 (648)
T ss_pred HHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 24579999999999999999999986543221 122456788999999889999999999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067 157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~ 203 (229)
|++|||||||++||+.+++.+.+++++++++|.|+|++||+++.++.
T Consensus 163 P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~ 209 (648)
T PRK10535 163 GQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQ 209 (648)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHh
Confidence 99999999999999999999999999987779999999999997754
No 307
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=3.1e-43 Score=331.90 Aligned_cols=190 Identities=23% Similarity=0.295 Sum_probs=161.9
Q ss_pred cEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 10 RLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 10 ~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
.++++|++++|++ +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|+++|+++..... ..++..+
T Consensus 313 ~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~-~~~~~~i 391 (569)
T PRK10789 313 ELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQL-DSWRSRL 391 (569)
T ss_pred cEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCH-HHHHhhe
Confidence 5999999999964 579999999999999999999999999999999999999999999999999876543 3467789
Q ss_pred eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChh-----------hcCCCCCCChhHHHHHHHHHHHhcC
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRL-----------AKEKARMLSMGQRKRLQLARLLAID 156 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqRv~lAral~~~ 156 (229)
+|++|++.++.. |++||+.++... ...++..++++.+++.++ .+.....||||||||++||||++.+
T Consensus 392 ~~v~q~~~lf~~-ti~~Ni~~~~~~-~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~ 469 (569)
T PRK10789 392 AVVSQTPFLFSD-TVANNIALGRPD-ATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLN 469 (569)
T ss_pred EEEccCCeeccc-cHHHHHhcCCCC-CCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 999999998875 999999875321 123344556666655432 3455678999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067 157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~ 203 (229)
|++|||||||++||+.+.+.+.+.+.++. +++|+|++||+++.+..
T Consensus 470 ~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~~~~~ 515 (569)
T PRK10789 470 AEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLSALTE 515 (569)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchhHHHc
Confidence 99999999999999999999999998874 58999999999988765
No 308
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=5.6e-43 Score=336.83 Aligned_cols=191 Identities=25% Similarity=0.387 Sum_probs=162.9
Q ss_pred CcEEEEeEEEEeC--CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067 9 PRLLLKNVSCMRN--AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ 86 (229)
Q Consensus 9 ~~l~l~~l~~~~~--~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 86 (229)
..++++||+++|+ ++++|+|+||+|++||.++|+|+||||||||+|+|+|+++|++|+|+++|.++...+. ..++..
T Consensus 454 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~-~~~r~~ 532 (694)
T TIGR01846 454 GAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADP-AWLRRQ 532 (694)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCH-HHHHHh
Confidence 3599999999995 3569999999999999999999999999999999999999999999999999977653 356778
Q ss_pred ceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCCh-----------hhcCCCCCCChhHHHHHHHHHHHhc
Q 027067 87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGR-----------LAKEKARMLSMGQRKRLQLARLLAI 155 (229)
Q Consensus 87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqRv~lAral~~ 155 (229)
++|++|++.+++. |++||+.++.. ....++..++++..++.+ .......+||||||||++|||||+.
T Consensus 533 i~~v~q~~~lf~~-ti~eNi~~~~~-~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~ 610 (694)
T TIGR01846 533 MGVVLQENVLFSR-SIRDNIALCNP-GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVG 610 (694)
T ss_pred CeEEccCCeehhh-hHHHHHhcCCC-CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999988875 99999987432 112334455566555543 3345577999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067 156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~ 203 (229)
+|++|||||||++||+.+++.+.+.+.++. +++|+|++||+++.+..
T Consensus 611 ~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~ 657 (694)
T TIGR01846 611 NPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLSTVRA 657 (694)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChHHHHh
Confidence 999999999999999999999999998874 57999999999998866
No 309
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-43 Score=298.28 Aligned_cols=165 Identities=31% Similarity=0.450 Sum_probs=147.4
Q ss_pred CcEEEEeEEEEeCC---------eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCch
Q 027067 9 PRLLLKNVSCMRNA---------QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI 79 (229)
Q Consensus 9 ~~l~l~~l~~~~~~---------~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~ 79 (229)
++++++||++.|.. ..+++||||+|++||++||+|+||||||||-|+|.|+++|++|+|+|+|+++....
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~- 81 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS- 81 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-
Confidence 57999999999842 37999999999999999999999999999999999999999999999999865421
Q ss_pred hhhhhhcceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHHhcCCC
Q 027067 80 FHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARLLAIDRP 158 (229)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~ 158 (229)
.....+++.+.|+.+|+. +..+++|++|||||+|||.|||||+.+|+
T Consensus 82 --------------------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~ 129 (268)
T COG4608 82 --------------------------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPK 129 (268)
T ss_pred --------------------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCc
Confidence 001123577899999996 57899999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 159 IWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 159 illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
++++|||+|+||...+..+.+++.+++++ |.|.+++|||++.+...+|
T Consensus 130 liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 130 LIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred EEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 99999999999999999999999998765 8999999999999998876
No 310
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-42 Score=331.80 Aligned_cols=184 Identities=26% Similarity=0.378 Sum_probs=157.1
Q ss_pred CCCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067 7 PLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ 86 (229)
Q Consensus 7 ~~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 86 (229)
..++|+++||++.|+++.+|+|+||+|.+|+++||+||||||||||||+|+|+++|++|+|++++. ..
T Consensus 309 ~~~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~ 376 (638)
T PRK10636 309 PNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG------------IK 376 (638)
T ss_pred CCceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC------------EE
Confidence 346899999999999999999999999999999999999999999999999999999999998631 14
Q ss_pred ceEeeccc--ccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEe
Q 027067 87 LNWLSLKD--AVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLD 163 (229)
Q Consensus 87 ~~~~~~~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~illlD 163 (229)
++|++|+. .+.+..++.+++..... ......+.+++..+++. +..++++.+|||||||||+||++|+.+|++||||
T Consensus 377 igy~~Q~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLD 455 (638)
T PRK10636 377 LGYFAQHQLEFLRADESPLQHLARLAP-QELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLD 455 (638)
T ss_pred EEEecCcchhhCCccchHHHHHHHhCc-hhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 78888863 34455677776532110 11223467889999996 4789999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 164 EPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 164 EPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|||++||+.+++.+.++|.++ +.|||+||||++++..++|
T Consensus 456 EPt~~LD~~~~~~l~~~L~~~---~gtvi~vSHd~~~~~~~~d 495 (638)
T PRK10636 456 EPTNHLDLDMRQALTEALIDF---EGALVVVSHDRHLLRSTTD 495 (638)
T ss_pred CCCCCCCHHHHHHHHHHHHHc---CCeEEEEeCCHHHHHHhCC
Confidence 999999999999999999887 3499999999999998775
No 311
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1.2e-42 Score=326.47 Aligned_cols=187 Identities=26% Similarity=0.296 Sum_probs=157.1
Q ss_pred cEEEEeEEEEeCC-eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 10 RLLLKNVSCMRNA-QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 10 ~l~l~~l~~~~~~-~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
.++++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..... ..++.+++
T Consensus 322 ~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~-~~~~~~i~ 400 (547)
T PRK10522 322 TLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQP-EDYRKLFS 400 (547)
T ss_pred eEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCH-HHHhhheE
Confidence 5999999999964 579999999999999999999999999999999999999999999999999876543 34677899
Q ss_pred EeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcC-----CCCCCChhHHHHHHHHHHHhcCCCeEEEe
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKE-----KARMLSMGQRKRLQLARLLAIDRPIWLLD 163 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgGqkqRv~lAral~~~p~illlD 163 (229)
|++|++.+++. |+.+|- . ....+...++++.+++....+. ...+||||||||++||||++.+|++||||
T Consensus 401 ~v~q~~~lf~~-ti~~n~---~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililD 474 (547)
T PRK10522 401 AVFTDFHLFDQ-LLGPEG---K--PANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLD 474 (547)
T ss_pred EEecChhHHHH-hhcccc---C--chHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 99999887765 777761 0 1122345677888888755432 14689999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHH-HhCCcEEEEEeCChhhHHh
Q 027067 164 EPSVALDYDGVRLLEYIIAEH-RKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 164 EPt~~LD~~~~~~l~~~l~~~-~~~g~tii~vtH~~~~~~~ 203 (229)
|||++||+++.+.+.+.+.+. ++.++|+|++||+++.+..
T Consensus 475 E~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~ 515 (547)
T PRK10522 475 EWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIH 515 (547)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHh
Confidence 999999999999888877654 3458999999999877654
No 312
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=1.2e-42 Score=326.90 Aligned_cols=188 Identities=24% Similarity=0.341 Sum_probs=158.8
Q ss_pred CcEEEEeEEEEeCCe-----eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhh
Q 027067 9 PRLLLKNVSCMRNAQ-----QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQY 83 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~-----~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~ 83 (229)
..++++||+++|+++ ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... ..+
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~-~~~ 414 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSR-DDY 414 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH-HHH
Confidence 359999999999752 59999999999999999999999999999999999999999999999999976543 346
Q ss_pred hhcceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCC------CCCCChhHHHHHHHHHHHhcCC
Q 027067 84 KLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEK------ARMLSMGQRKRLQLARLLAIDR 157 (229)
Q Consensus 84 ~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~------~~~LSgGqkqRv~lAral~~~p 157 (229)
+..+++++|++.++.. |+.+|.. ....+++..++++.+++.+..++. ...||||||||++||||++.+|
T Consensus 415 ~~~i~~v~q~~~lf~~-ti~~n~~----~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~ 489 (555)
T TIGR01194 415 RDLFSAIFADFHLFDD-LIGPDEG----EHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDR 489 (555)
T ss_pred HhhCcEEccChhhhhh-hhhcccc----cchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCC
Confidence 6789999999888765 7778742 111234567789999998766543 3579999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCcEEEEEeCChhhHH
Q 027067 158 PIWLLDEPSVALDYDGVRLLEYII-AEHRKKGGIVIVATHLPIQIE 202 (229)
Q Consensus 158 ~illlDEPt~~LD~~~~~~l~~~l-~~~~~~g~tii~vtH~~~~~~ 202 (229)
++|||||||++||+.+++.+.+.+ +.++..++|+|++||+++.++
T Consensus 490 ~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~ 535 (555)
T TIGR01194 490 PILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFE 535 (555)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH
Confidence 999999999999999999887654 455566899999999997665
No 313
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=4.1e-43 Score=357.77 Aligned_cols=192 Identities=22% Similarity=0.367 Sum_probs=166.3
Q ss_pred cEEEEeEEEEeC---CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC------------------------
Q 027067 10 RLLLKNVSCMRN---AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP------------------------ 62 (229)
Q Consensus 10 ~l~l~~l~~~~~---~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p------------------------ 62 (229)
.++++||+|+|+ ++++|+|+||+|++|+++||+||||||||||+++|+|+++|
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~ 1244 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQG 1244 (1466)
T ss_pred eEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccc
Confidence 599999999995 35799999999999999999999999999999999999998
Q ss_pred ------------------------------CccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHHh
Q 027067 63 ------------------------------SAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVL 112 (229)
Q Consensus 63 ------------------------------~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~ 112 (229)
++|+|++||.++..... ..++.+++|++|++.+|. .|++|||.++..
T Consensus 1245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~-~~lR~~i~~V~Qep~LF~-gTIreNI~~g~~- 1321 (1466)
T PTZ00265 1245 DEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNL-KDLRNLFSIVSQEPMLFN-MSIYENIKFGKE- 1321 (1466)
T ss_pred ccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCH-HHHHhhccEeCCCCcccc-ccHHHHHhcCCC-
Confidence 69999999999987653 457789999999999885 599999998632
Q ss_pred cCccccHHHHHHHhCCChhh-----------cCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 027067 113 EGKQGNSLPALELMGLGRLA-----------KEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYII 181 (229)
Q Consensus 113 ~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l 181 (229)
....+++.++++..++.++. ..+...||||||||++|||||+++|+|||||||||+||.++.+.+.+.+
T Consensus 1322 ~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L 1401 (1466)
T PTZ00265 1322 DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTI 1401 (1466)
T ss_pred CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHH
Confidence 12334566777777665543 3456789999999999999999999999999999999999999999999
Q ss_pred HHHH-hCCcEEEEEeCChhhHHhh
Q 027067 182 AEHR-KKGGIVIVATHLPIQIEDA 204 (229)
Q Consensus 182 ~~~~-~~g~tii~vtH~~~~~~~~ 204 (229)
..+. .+++|+|+|||+++.++.+
T Consensus 1402 ~~~~~~~~~TvIiIaHRlsti~~a 1425 (1466)
T PTZ00265 1402 VDIKDKADKTIITIAHRIASIKRS 1425 (1466)
T ss_pred HHHhccCCCEEEEEechHHHHHhC
Confidence 8875 3589999999999998875
No 314
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.6e-43 Score=343.16 Aligned_cols=192 Identities=29% Similarity=0.441 Sum_probs=163.2
Q ss_pred CcEEEEeEEEEeCCe---eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhh
Q 027067 9 PRLLLKNVSCMRNAQ---QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL 85 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~---~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 85 (229)
..++++||+|+|+.+ ++|+++||.|++|+.++|+|||||||||++++|.+++.|++|+|++||.++..... +..+.
T Consensus 349 g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~-~~lr~ 427 (1228)
T KOG0055|consen 349 GEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNL-KWLRS 427 (1228)
T ss_pred cceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcch-HHHHh
Confidence 469999999999754 59999999999999999999999999999999999999999999999999987653 45678
Q ss_pred cceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhC-----------CChhhcCCCCCCChhHHHHHHHHHHHh
Q 027067 86 QLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMG-----------LGRLAKEKARMLSMGQRKRLQLARLLA 154 (229)
Q Consensus 86 ~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgGqkqRv~lAral~ 154 (229)
++|.|+|+|.+| ..|++||+.++... ....+..++.+..+ ++.....+..+|||||||||+|||||+
T Consensus 428 ~iglV~QePvlF-~~tI~eNI~~G~~d-at~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv 505 (1228)
T KOG0055|consen 428 QIGLVSQEPVLF-ATTIRENIRYGKPD-ATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALV 505 (1228)
T ss_pred hcCeeeechhhh-cccHHHHHhcCCCc-ccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHH
Confidence 999999999665 55999999986432 12233444444433 333344566789999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067 155 IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA 204 (229)
Q Consensus 155 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~ 204 (229)
.+|+|||||||||+||++++..+.+.|.... .|+|.|+|+|+++.+..+
T Consensus 506 ~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLStIrna 554 (1228)
T KOG0055|consen 506 RNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLSTIRNA 554 (1228)
T ss_pred hCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehhhhhcc
Confidence 9999999999999999999999999998875 588999999999999884
No 315
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.6e-43 Score=282.68 Aligned_cols=197 Identities=26% Similarity=0.343 Sum_probs=178.7
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcC-EeCCCCchhhhhhhcc
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNG-HDITQSGIFHQYKLQL 87 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g-~~~~~~~~~~~~~~~~ 87 (229)
+.|+++||+++|++..+|+++||++.+||.-+|+|||||||||++.+|+|-.+|++|+|+++| .+++..+..+..+..|
T Consensus 4 ~iL~~~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GI 83 (249)
T COG4674 4 IILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGI 83 (249)
T ss_pred ceEEEeceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhcc
Confidence 579999999999999999999999999999999999999999999999999999999999999 8898877666678889
Q ss_pred eEeecccccCCCCCHHHhHHHHHH--------hc-C----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHh
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFEV--------LE-G----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLA 154 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~~--------~~-~----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~ 154 (229)
|--+|.|.+|+.+||+||+.+... +. + ..+++.+.|+..||.+..++....||.||||++.|++.++
T Consensus 84 GRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~ 163 (249)
T COG4674 84 GRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLA 163 (249)
T ss_pred CccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeec
Confidence 999999999999999999975321 11 1 1235778999999999999999999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 155 IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 155 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
++|++|++|||++|+-....+...++++.++. +++|++|.||+.++....+
T Consensus 164 Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~Fvr~~A~ 214 (249)
T COG4674 164 QDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMGFVREIAD 214 (249)
T ss_pred cCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHHHHHHhhh
Confidence 99999999999999999999999999999864 6799999999999998763
No 316
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-43 Score=319.28 Aligned_cols=191 Identities=34% Similarity=0.483 Sum_probs=166.4
Q ss_pred cEEEEeEEEEeCCe--eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 10 RLLLKNVSCMRNAQ--QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 10 ~l~l~~l~~~~~~~--~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
.++++||+|+|.+. ++|+|+||++++||.+||+|++|||||||+++|+|.++|++|+|+++|.++...+. +..+..+
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~-~~~~e~i 414 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDE-QALRETI 414 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCCh-hhHHHHH
Confidence 69999999999764 59999999999999999999999999999999999999999999999999876543 2356778
Q ss_pred eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhh-----------cCCCCCCChhHHHHHHHHHHHhcC
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLA-----------KEKARMLSMGQRKRLQLARLLAID 156 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral~~~ 156 (229)
++++|...+|.. |+++|+.+.... ...++..++++.+||.++. +.....|||||+||++|||+|+++
T Consensus 415 ~vl~Qr~hlF~~-Tlr~NL~lA~~~-AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~d 492 (573)
T COG4987 415 SVLTQRVHLFSG-TLRDNLRLANPD-ASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHD 492 (573)
T ss_pred hhhccchHHHHH-HHHHHHhhcCCC-CCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcC
Confidence 999999998876 999999875432 2345677888888886554 345689999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067 157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA 204 (229)
Q Consensus 157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~ 204 (229)
.+++||||||.|||+.+.+.+.+.+.+.. +|+|+|+|||++..++.+
T Consensus 493 apl~lLDEPTegLD~~TE~~vL~ll~~~~-~~kTll~vTHrL~~le~~ 539 (573)
T COG4987 493 APLWLLDEPTEGLDPITERQVLALLFEHA-EGKTLLMVTHRLRGLERM 539 (573)
T ss_pred CCeEEecCCcccCChhhHHHHHHHHHHHh-cCCeEEEEecccccHhhc
Confidence 99999999999999999999999888764 489999999999888775
No 317
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=4.2e-42 Score=298.36 Aligned_cols=175 Identities=25% Similarity=0.322 Sum_probs=143.8
Q ss_pred CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
.+.|+++|+++. ++.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|+++| .+
T Consensus 37 ~~~l~i~nls~~--~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g--------------~i 100 (282)
T cd03291 37 DNNLFFSNLCLV--GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG--------------RI 100 (282)
T ss_pred CCeEEEEEEEEe--cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC--------------EE
Confidence 357999999985 46799999999999999999999999999999999999999999999987 27
Q ss_pred eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChh-----------hcCCCCCCChhHHHHHHHHHHHhcC
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRL-----------AKEKARMLSMGQRKRLQLARLLAID 156 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqRv~lAral~~~ 156 (229)
+|++|++.+++. |+.||+.+.... ......+.++.+++.+. .++.+.+||+|||||++|||||+.+
T Consensus 101 ~yv~q~~~l~~~-tv~enl~~~~~~--~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~ 177 (282)
T cd03291 101 SFSSQFSWIMPG-TIKENIIFGVSY--DEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKD 177 (282)
T ss_pred EEEeCccccccc-CHHHHhhccccc--CHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 889998887775 999998764211 11122334444555332 2344679999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEeCChhhHH
Q 027067 157 RPIWLLDEPSVALDYDGVRLLEYI-IAEHRKKGGIVIVATHLPIQIE 202 (229)
Q Consensus 157 p~illlDEPt~~LD~~~~~~l~~~-l~~~~~~g~tii~vtH~~~~~~ 202 (229)
|++|||||||++||+.+++.+.+. +..++ ++.|||++||+++.+.
T Consensus 178 p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~~~ 223 (282)
T cd03291 178 ADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEHLK 223 (282)
T ss_pred CCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHHHH
Confidence 999999999999999999988775 45554 4789999999999875
No 318
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.4e-43 Score=297.18 Aligned_cols=188 Identities=20% Similarity=0.319 Sum_probs=163.1
Q ss_pred EEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCc---hhhhhhhcceEeec
Q 027067 16 VSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG---IFHQYKLQLNWLSL 92 (229)
Q Consensus 16 l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~---~~~~~~~~~~~~~~ 92 (229)
+.+++|+..+ +++|+.+.-.++||.|+||||||||+|+|+|+.+|++|.|.++|+.+.... .....++++||++|
T Consensus 6 ~~~~lG~~~l--~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQ 83 (352)
T COG4148 6 FRQRLGNFAL--DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQ 83 (352)
T ss_pred hhhhcCceEE--EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEee
Confidence 4445565544 789999886899999999999999999999999999999999998765321 11235678999999
Q ss_pred ccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q 027067 93 KDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYD 172 (229)
Q Consensus 93 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~ 172 (229)
+..+|+++||+.|+.|+.... ......++...+|++++++++|.+|||||||||+|+|||+..|++|+||||.++||..
T Consensus 84 DARLFpH~tVrgNL~YG~~~~-~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~ 162 (352)
T COG4148 84 DARLFPHYTVRGNLRYGMWKS-MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLP 162 (352)
T ss_pred ccccccceEEecchhhhhccc-chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccc
Confidence 999999999999999875432 2345677889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 173 GVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 173 ~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
.+.++.-+++.++++ +..|++|||.++++....|
T Consensus 163 RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd 197 (352)
T COG4148 163 RKREILPYLERLRDEINIPILYVSHSLDEVLRLAD 197 (352)
T ss_pred hhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhh
Confidence 999999999998765 7889999999999988764
No 319
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-42 Score=327.84 Aligned_cols=193 Identities=23% Similarity=0.283 Sum_probs=145.9
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeC----CCCchhhhhhh
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI----TQSGIFHQYKL 85 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~----~~~~~~~~~~~ 85 (229)
||+++||+++|+++++|+||||+|++|+++||+||||||||||||+|+|+++|++|+|+++|... .+... .....
T Consensus 1 ~i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~-~~~~~ 79 (638)
T PRK10636 1 MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETP-ALPQP 79 (638)
T ss_pred CEEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCC-CCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999987420 00000 00011
Q ss_pred cceEeecccccCCCCCHHHh--------HHHH---HHhc-----CccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHH
Q 027067 86 QLNWLSLKDAVKEKFTVLDN--------VQWF---EVLE-----GKQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQ 148 (229)
Q Consensus 86 ~~~~~~~~~~~~~~~tv~e~--------l~~~---~~~~-----~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~ 148 (229)
.++|+++....+..+++... ..+. .... ....++.++++.+|+. +..++++.+|||||||||+
T Consensus 80 ~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~ 159 (638)
T PRK10636 80 ALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLN 159 (638)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHH
Confidence 12233222111111111000 0000 0000 0123466789999996 5789999999999999999
Q ss_pred HHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 149 LARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 149 lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
||+||+.+|++|||||||++||+.+++++.+++..+ +.|||+||||.+++..+++
T Consensus 160 LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~~l~~~~d 214 (638)
T PRK10636 160 LAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRDFLDPIVD 214 (638)
T ss_pred HHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHHHHHHhcC
Confidence 999999999999999999999999999999988765 5699999999999998875
No 320
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=6.3e-42 Score=269.69 Aligned_cols=135 Identities=32% Similarity=0.573 Sum_probs=124.7
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067 11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL 90 (229)
Q Consensus 11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~ 90 (229)
++++|++++|++.++++++||++++||+++|+||||||||||+++|+|+++|++|+|+++|+ ..++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~------------~~i~~~ 68 (144)
T cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST------------VKIGYF 68 (144)
T ss_pred CEEEEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe------------EEEEEE
Confidence 47899999998888999999999999999999999999999999999999999999999884 246676
Q ss_pred ecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q 027067 91 SLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170 (229)
Q Consensus 91 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD 170 (229)
+| ||+||+||++|||||+.+|+++||||||++||
T Consensus 69 ~~----------------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD 102 (144)
T cd03221 69 EQ----------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLD 102 (144)
T ss_pred cc----------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCC
Confidence 65 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 171 YDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 171 ~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
+.++..+.+.++++ +.|+|++||+++++...+|
T Consensus 103 ~~~~~~l~~~l~~~---~~til~~th~~~~~~~~~d 135 (144)
T cd03221 103 LESIEALEEALKEY---PGTVILVSHDRYFLDQVAT 135 (144)
T ss_pred HHHHHHHHHHHHHc---CCEEEEEECCHHHHHHhCC
Confidence 99999999998876 4799999999999887665
No 321
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=3.9e-42 Score=304.17 Aligned_cols=163 Identities=32% Similarity=0.423 Sum_probs=143.8
Q ss_pred EEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHHhcCc-----
Q 027067 41 LTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK----- 115 (229)
Q Consensus 41 iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~----- 115 (229)
|+||||||||||+|+|+|+++|++|+|+++|+++..... .++.++|++|++.+++.+|+.||+.+.....+.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~---~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~ 77 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP---HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEI 77 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH---HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHH
Confidence 689999999999999999999999999999999865332 345799999999999999999999886433221
Q ss_pred cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEE
Q 027067 116 QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVA 194 (229)
Q Consensus 116 ~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~v 194 (229)
..++.++++.+++.++.++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.+.++.++ |.|+|+|
T Consensus 78 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiiv 157 (325)
T TIGR01187 78 KPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFV 157 (325)
T ss_pred HHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 124567899999999999999999999999999999999999999999999999999999999999998654 8999999
Q ss_pred eCChhhHHhhhc
Q 027067 195 THLPIQIEDAMN 206 (229)
Q Consensus 195 tH~~~~~~~~~~ 206 (229)
|||++++...+|
T Consensus 158 THd~~e~~~~~d 169 (325)
T TIGR01187 158 THDQEEAMTMSD 169 (325)
T ss_pred eCCHHHHHHhCC
Confidence 999999888765
No 322
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=3.7e-42 Score=350.74 Aligned_cols=192 Identities=21% Similarity=0.378 Sum_probs=163.3
Q ss_pred cEEEEeEEEEeCC---eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEE-cCEeCCCCchhhhhhh
Q 027067 10 RLLLKNVSCMRNA---QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW-NGHDITQSGIFHQYKL 85 (229)
Q Consensus 10 ~l~l~~l~~~~~~---~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~-~g~~~~~~~~~~~~~~ 85 (229)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++ +|.++..... ..++.
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~-~~lr~ 460 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINL-KWWRS 460 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCH-HHHHH
Confidence 5999999999974 36999999999999999999999999999999999999999999999 5687765443 34577
Q ss_pred cceEeecccccCCCCCHHHhHHHHHHh-----------------------------------------------------
Q 027067 86 QLNWLSLKDAVKEKFTVLDNVQWFEVL----------------------------------------------------- 112 (229)
Q Consensus 86 ~~~~~~~~~~~~~~~tv~e~l~~~~~~----------------------------------------------------- 112 (229)
+++|++|++.+++. |++||+.++...
T Consensus 461 ~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 539 (1466)
T PTZ00265 461 KIGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRK 539 (1466)
T ss_pred hccEecccccchhc-cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhccc
Confidence 89999999998875 999999874210
Q ss_pred ---cCccccHHHHHHHhCCChhh-----------cCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q 027067 113 ---EGKQGNSLPALELMGLGRLA-----------KEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLE 178 (229)
Q Consensus 113 ---~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~ 178 (229)
....+++.++++.+++.++. .+.+.+||||||||++|||||+.+|+||||||||++||+.+++.+.
T Consensus 540 ~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~ 619 (1466)
T PTZ00265 540 NYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQ 619 (1466)
T ss_pred ccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHH
Confidence 00112355677777776553 4668899999999999999999999999999999999999999999
Q ss_pred HHHHHHHh-CCcEEEEEeCChhhHHh
Q 027067 179 YIIAEHRK-KGGIVIVATHLPIQIED 203 (229)
Q Consensus 179 ~~l~~~~~-~g~tii~vtH~~~~~~~ 203 (229)
+.++++++ +|+|+|+|||+++.+..
T Consensus 620 ~~L~~~~~~~g~TvIiIsHrls~i~~ 645 (1466)
T PTZ00265 620 KTINNLKGNENRITIIIAHRLSTIRY 645 (1466)
T ss_pred HHHHHHhhcCCCEEEEEeCCHHHHHh
Confidence 99999865 58999999999998854
No 323
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.2e-41 Score=276.81 Aligned_cols=136 Identities=23% Similarity=0.311 Sum_probs=123.4
Q ss_pred EeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecc
Q 027067 14 KNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLK 93 (229)
Q Consensus 14 ~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~ 93 (229)
.||+++|+++++++++ |+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ++|++|.
T Consensus 4 ~~l~~~~~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-------------i~~~~q~ 69 (177)
T cd03222 4 PDCVKRYGVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT-------------PVYKPQY 69 (177)
T ss_pred CCeEEEECCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE-------------EEEEccc
Confidence 6899999999999985 9999999999999999999999999999999999999998853 3455543
Q ss_pred cccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHH
Q 027067 94 DAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDG 173 (229)
Q Consensus 94 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~ 173 (229)
.. ||||||||++||||++.+|+++||||||++||+.+
T Consensus 70 ~~-------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~ 106 (177)
T cd03222 70 ID-------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQ 106 (177)
T ss_pred CC-------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHH
Confidence 21 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCC-cEEEEEeCChhhHHhhhc
Q 027067 174 VRLLEYIIAEHRKKG-GIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 174 ~~~l~~~l~~~~~~g-~tii~vtH~~~~~~~~~~ 206 (229)
++.+.+.+.++++++ .|||++||+++++...+|
T Consensus 107 ~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d 140 (177)
T cd03222 107 RLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSD 140 (177)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCC
Confidence 999999999987665 899999999999988765
No 324
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=8.5e-42 Score=349.73 Aligned_cols=191 Identities=24% Similarity=0.307 Sum_probs=166.5
Q ss_pred CcEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067 9 PRLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ 86 (229)
Q Consensus 9 ~~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 86 (229)
..++++||+++|.. +++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+. ...+.+
T Consensus 1233 g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~-~~lR~~ 1311 (1495)
T PLN03232 1233 GSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGL-TDLRRV 1311 (1495)
T ss_pred CcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCH-HHHHhh
Confidence 35999999999953 579999999999999999999999999999999999999999999999999987654 457789
Q ss_pred ceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhh-----------cCCCCCCChhHHHHHHHHHHHhc
Q 027067 87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLA-----------KEKARMLSMGQRKRLQLARLLAI 155 (229)
Q Consensus 87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral~~ 155 (229)
++++||++.+|+. |++||+.++. ...++++.++++.+++.++. ......||||||||++|||||++
T Consensus 1312 i~iVpQdp~LF~g-TIr~NL~~~~--~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr 1388 (1495)
T PLN03232 1312 LSIIPQSPVLFSG-TVRFNIDPFS--EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLR 1388 (1495)
T ss_pred cEEECCCCeeeCc-cHHHHcCCCC--CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999876 9999997643 12334566777777775543 34456899999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067 156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA 204 (229)
Q Consensus 156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~ 204 (229)
+|+|||||||||+||.++.+.+.+.+++.. +++|+|+|+|+++.+.++
T Consensus 1389 ~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~ti~~~ 1436 (1495)
T PLN03232 1389 RSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLNTIIDC 1436 (1495)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHhC
Confidence 999999999999999999999999998763 479999999999999885
No 325
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.1e-41 Score=349.95 Aligned_cols=191 Identities=25% Similarity=0.318 Sum_probs=167.0
Q ss_pred CcEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067 9 PRLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ 86 (229)
Q Consensus 9 ~~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 86 (229)
..|+++||+++|.+ .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+. ...+.+
T Consensus 1236 g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l-~~LR~~ 1314 (1622)
T PLN03130 1236 GSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGL-MDLRKV 1314 (1622)
T ss_pred CcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCH-HHHHhc
Confidence 36999999999964 479999999999999999999999999999999999999999999999999987654 457789
Q ss_pred ceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhh-----------cCCCCCCChhHHHHHHHHHHHhc
Q 027067 87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLA-----------KEKARMLSMGQRKRLQLARLLAI 155 (229)
Q Consensus 87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral~~ 155 (229)
++++||++.+|.. |++||+..+.. ..++++.++++.+++.++. ......||||||||++|||||++
T Consensus 1315 IsiVpQdp~LF~G-TIreNLd~~~~--~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr 1391 (1622)
T PLN03130 1315 LGIIPQAPVLFSG-TVRFNLDPFNE--HNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLR 1391 (1622)
T ss_pred cEEECCCCccccc-cHHHHhCcCCC--CCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHc
Confidence 9999999999876 99999976531 2344567777777765443 33456899999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067 156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA 204 (229)
Q Consensus 156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~ 204 (229)
+|+|||||||||+||.++.+.+.+.+++.. +++|+|+|+|+++.+.++
T Consensus 1392 ~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~tI~~~ 1439 (1622)
T PLN03130 1392 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDC 1439 (1622)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHHHHhC
Confidence 999999999999999999999999998864 479999999999999885
No 326
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=1.4e-41 Score=283.94 Aligned_cols=168 Identities=20% Similarity=0.261 Sum_probs=138.6
Q ss_pred eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEE-EcCEeCCCCchhhhhhhcceEeecccccCCCCCH
Q 027067 24 QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEIL-WNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTV 102 (229)
Q Consensus 24 ~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv 102 (229)
++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|. ++|..+. +.+.+.+++.+|+
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~--------------~~~~~~l~~~ltv 66 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP--------------LGANSFILPGLTG 66 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceec--------------cccccccCCcCcH
Confidence 379999999999999999999999999999999999999999997 7664321 1123457788999
Q ss_pred HHhHHHHHHhcCc-ccc-HHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q 027067 103 LDNVQWFEVLEGK-QGN-SLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYI 180 (229)
Q Consensus 103 ~e~l~~~~~~~~~-~~~-~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~ 180 (229)
.||+.+....... ..+ ...+.+.+++....++++.+||+|||||++||||++.+|+++||||||+++|+.+++.+.+.
T Consensus 67 ~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~ 146 (213)
T PRK15177 67 EENARMMASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAA 146 (213)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHH
Confidence 9999876543322 111 22334567888888999999999999999999999999999999999999999999988887
Q ss_pred HHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 181 IAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 181 l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
+.+..+ +.|+|++||+++++...+|
T Consensus 147 l~~~~~-~~~ii~vsH~~~~~~~~~d 171 (213)
T PRK15177 147 LACQLQ-QKGLIVLTHNPRLIKEHCH 171 (213)
T ss_pred HHHHhh-CCcEEEEECCHHHHHHhcC
Confidence 755433 4679999999999988776
No 327
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=1.3e-41 Score=315.78 Aligned_cols=182 Identities=30% Similarity=0.401 Sum_probs=157.2
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
.+|+++|++++|+++++++++||+|.+|+++||||+||||||||||+|+|...|++|+|...+. ..++
T Consensus 2 ~~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~------------~~v~ 69 (530)
T COG0488 2 SMITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG------------LRVG 69 (530)
T ss_pred ceEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC------------ceEE
Confidence 4799999999999999999999999999999999999999999999999999999999987431 2579
Q ss_pred EeecccccCCCCCHHHhHHHHHH-----------hc------------------------CccccHHHHHHHhCCChhhc
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEV-----------LE------------------------GKQGNSLPALELMGLGRLAK 133 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~-----------~~------------------------~~~~~~~~~l~~~~l~~~~~ 133 (229)
|++|++.+.+..||.+.+..... .. ..+.++..++.-+|+... +
T Consensus 70 ~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~ 148 (530)
T COG0488 70 YLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-D 148 (530)
T ss_pred EeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-c
Confidence 99999999988899887642110 00 001234456777788766 9
Q ss_pred CCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 134 EKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 134 ~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
+++++||||||.||+||+||..+|++||||||||+||..+..++.+.|..+. | |+|+||||-.++..+|+
T Consensus 149 ~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~--g-tviiVSHDR~FLd~V~t 218 (530)
T COG0488 149 RPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYP--G-TVIVVSHDRYFLDNVAT 218 (530)
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCC--C-cEEEEeCCHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999998653 5 99999999999999985
No 328
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=1.6e-41 Score=324.74 Aligned_cols=179 Identities=18% Similarity=0.271 Sum_probs=153.5
Q ss_pred CcEEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 9 PRLLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 9 ~~l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
.+++++||+++|+ ++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ +.++
T Consensus 450 ~~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~------------~~~i 517 (659)
T TIGR00954 450 NGIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA------------KGKL 517 (659)
T ss_pred CeEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC------------CCcE
Confidence 4699999999995 56899999999999999999999999999999999999999999998753 2368
Q ss_pred eEeecccccCCCCCHHHhHHHHHHh-----c-CccccHHHHHHHhCCChhhcCCC---------CCCChhHHHHHHHHHH
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFEVL-----E-GKQGNSLPALELMGLGRLAKEKA---------RMLSMGQRKRLQLARL 152 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~~~-----~-~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgGqkqRv~lAra 152 (229)
+|++|++.+++. |++||+.+.... . ...++..++++.+++.++.+++. .+||||||||++||||
T Consensus 518 ~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARa 596 (659)
T TIGR00954 518 FYVPQRPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARL 596 (659)
T ss_pred EEECCCCCCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHH
Confidence 999999988877 999999864211 1 12234567899999987766543 7999999999999999
Q ss_pred HhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067 153 LAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 153 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~ 203 (229)
|+.+|+++||||||++||+.+++.+.+.+++ .|.|+|++||+++.+..
T Consensus 597 l~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~~~~~ 644 (659)
T TIGR00954 597 FYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKSLWKY 644 (659)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchHHHHh
Confidence 9999999999999999999999998888765 38999999999987643
No 329
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-41 Score=277.16 Aligned_cols=196 Identities=24% Similarity=0.328 Sum_probs=175.2
Q ss_pred CcEEEEeEEEEeCCe-eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCC--CCCccEEEEcCEeCCCCchhhhhhh
Q 027067 9 PRLLLKNVSCMRNAQ-QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS--KPSAGEILWNGHDITQSGIFHQYKL 85 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~-~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~--~p~~G~I~~~g~~~~~~~~~~~~~~ 85 (229)
.+|+++||+++..++ .+|++|||+|++||+.+|+||||||||||.++|+|.- ++++|+|.++|+++...++..+.+.
T Consensus 2 ~~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~ 81 (251)
T COG0396 2 MMLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA 81 (251)
T ss_pred ceeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence 479999999999985 9999999999999999999999999999999999984 7899999999999999888788888
Q ss_pred cceEeecccccCCCCCHHHhHHHHHHhcC--------ccccHHHHHHHhCCCh-hhcCCCC-CCChhHHHHHHHHHHHhc
Q 027067 86 QLNWLSLKDAVKEKFTVLDNVQWFEVLEG--------KQGNSLPALELMGLGR-LAKEKAR-MLSMGQRKRLQLARLLAI 155 (229)
Q Consensus 86 ~~~~~~~~~~~~~~~tv~e~l~~~~~~~~--------~~~~~~~~l~~~~l~~-~~~~~~~-~LSgGqkqRv~lAral~~ 155 (229)
.+...+|.|.-++..++.+.+........ .....++.++.+++.+ +++|+++ .+|||||+|..|+.+++.
T Consensus 82 GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~l 161 (251)
T COG0396 82 GIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLL 161 (251)
T ss_pred CCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhc
Confidence 99999999999999999998876543211 1234567889999975 7889886 799999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067 156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA 204 (229)
Q Consensus 156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~ 204 (229)
+|++.|||||-||||..+-+.+.+.++.+++.|.+++++||....+...
T Consensus 162 ePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i 210 (251)
T COG0396 162 EPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYI 210 (251)
T ss_pred CCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhc
Confidence 9999999999999999999999999999999999999999987666553
No 330
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-40 Score=265.56 Aligned_cols=147 Identities=37% Similarity=0.581 Sum_probs=133.7
Q ss_pred EEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeec
Q 027067 13 LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSL 92 (229)
Q Consensus 13 l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~ 92 (229)
++|++++|.++.+++++||+|++|++++|+|+||||||||+++|+|+++|++|+|+++|.++..... .+....++|++|
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~-~~~~~~i~~~~q 80 (157)
T cd00267 2 IENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPL-EELRRRIGYVPQ 80 (157)
T ss_pred eEEEEEEeCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCH-HHHHhceEEEee
Confidence 6899999988899999999999999999999999999999999999999999999999988754321 234456777776
Q ss_pred ccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q 027067 93 KDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYD 172 (229)
Q Consensus 93 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~ 172 (229)
||+||+||++||||++.+|++++|||||++||..
T Consensus 81 ----------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~ 114 (157)
T cd00267 81 ----------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPA 114 (157)
T ss_pred ----------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHH
Confidence 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 173 GVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 173 ~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
++..+.+.+.++++.+.|+|++||+++++..++|
T Consensus 115 ~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d 148 (157)
T cd00267 115 SRERLLELLRELAEEGRTVIIVTHDPELAELAAD 148 (157)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence 9999999999987767899999999999998766
No 331
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=4.3e-41 Score=320.86 Aligned_cols=191 Identities=22% Similarity=0.254 Sum_probs=143.6
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeC-CCCchhhhhhhcce
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI-TQSGIFHQYKLQLN 88 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~-~~~~~~~~~~~~~~ 88 (229)
+|+++||+++|+++++|+||||+|++|+++||+||||||||||||+|+|+++|++|+|.++|... ...... ......+
T Consensus 3 ~l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~-~~~~~~~ 81 (635)
T PRK11147 3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQD-PPRNVEG 81 (635)
T ss_pred EEEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccC-CCCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999987311 000000 0000011
Q ss_pred Eeecccc-----cC-------------CCCCHHHhHHHHHHh----c-----CccccHHHHHHHhCCChhhcCCCCCCCh
Q 027067 89 WLSLKDA-----VK-------------EKFTVLDNVQWFEVL----E-----GKQGNSLPALELMGLGRLAKEKARMLSM 141 (229)
Q Consensus 89 ~~~~~~~-----~~-------------~~~tv~e~l~~~~~~----~-----~~~~~~~~~l~~~~l~~~~~~~~~~LSg 141 (229)
++++... +. ..-++.+++...... . ....++.++++.+|+. .++++.+|||
T Consensus 82 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~~~~LSg 159 (635)
T PRK11147 82 TVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--PDAALSSLSG 159 (635)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--CCCchhhcCH
Confidence 1111000 00 000122333221111 0 1123466788999996 3889999999
Q ss_pred hHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 142 GQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 142 GqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
||||||+|||||+.+|++|||||||++||+.+++++.++|..+. .|||+||||..++..++|
T Consensus 160 GekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~---~tvlivsHd~~~l~~~~d 221 (635)
T PRK11147 160 GWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ---GSIIFISHDRSFIRNMAT 221 (635)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC---CEEEEEeCCHHHHHHhcC
Confidence 99999999999999999999999999999999999999998773 599999999999988775
No 332
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=6.1e-41 Score=341.13 Aligned_cols=188 Identities=22% Similarity=0.329 Sum_probs=166.3
Q ss_pred CcEEEEeEEEEeC----CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC---CCccEEEEcCEeCCCCchhh
Q 027067 9 PRLLLKNVSCMRN----AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK---PSAGEILWNGHDITQSGIFH 81 (229)
Q Consensus 9 ~~l~l~~l~~~~~----~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~---p~~G~I~~~g~~~~~~~~~~ 81 (229)
.+++++||++.|+ ++.+|+|||+++++||++||+|||||||||||++|+|+.+ |++|+|+++|+++..
T Consensus 758 ~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~----- 832 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS----- 832 (1394)
T ss_pred ceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-----
Confidence 3589999999984 4679999999999999999999999999999999999997 788999999998742
Q ss_pred hhhhcceEeecccccCCCCCHHHhHHHHHHhcC----c----cccHHHHHHHhCCChhhcCCCC----CCChhHHHHHHH
Q 027067 82 QYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG----K----QGNSLPALELMGLGRLAKEKAR----MLSMGQRKRLQL 149 (229)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~----~----~~~~~~~l~~~~l~~~~~~~~~----~LSgGqkqRv~l 149 (229)
..++.++|++|++.+++.+||+||+.+....+. . .+.+.++++.+++.+..++.++ .|||||||||+|
T Consensus 833 ~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~I 912 (1394)
T TIGR00956 833 SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTI 912 (1394)
T ss_pred hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHH
Confidence 245679999999888999999999998654331 1 1235678999999988888887 799999999999
Q ss_pred HHHHhcCCC-eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhH
Q 027067 150 ARLLAIDRP-IWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQI 201 (229)
Q Consensus 150 Aral~~~p~-illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~ 201 (229)
|++|+.+|+ +|+|||||+|||..++..+.+.+++++++|+|||++||+++..
T Consensus 913 a~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~ 965 (1394)
T TIGR00956 913 GVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAI 965 (1394)
T ss_pred HHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHH
Confidence 999999997 9999999999999999999999999988899999999999863
No 333
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=9.8e-42 Score=265.61 Aligned_cols=190 Identities=29% Similarity=0.322 Sum_probs=168.7
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCC---ccEEEEcCEeCCCCchhhhhhhc
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPS---AGEILWNGHDITQSGIFHQYKLQ 86 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~ 86 (229)
++.++||+.+.++...|.++||+|.+||++.|+||||||||||+.-+.|.+.++ +|+++++++++...+ ..+++
T Consensus 2 ~l~l~nvsl~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lP---a~qRq 78 (213)
T COG4136 2 MLCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLP---AAQRQ 78 (213)
T ss_pred ceeeeeeeecCCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccc---hhhhh
Confidence 689999999999999999999999999999999999999999999999999875 799999999987653 35678
Q ss_pred ceEeecccccCCCCCHHHhHHHHHH--hcC--ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067 87 LNWLSLKDAVKEKFTVLDNVQWFEV--LEG--KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLL 162 (229)
Q Consensus 87 ~~~~~~~~~~~~~~tv~e~l~~~~~--~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illl 162 (229)
+|.++|++-+|+.++|.+|+.|... ..+ ....+..++++.|+....++.|.+||||||-||++-|+|+.+|+.++|
T Consensus 79 ~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLL 158 (213)
T COG4136 79 IGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLL 158 (213)
T ss_pred eeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeee
Confidence 9999999999999999999987432 222 123466789999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHH-HHHHhCCcEEEEEeCChhhHH
Q 027067 163 DEPSVALDYDGVRLLEYII-AEHRKKGGIVIVATHLPIQIE 202 (229)
Q Consensus 163 DEPt~~LD~~~~~~l~~~l-~~~~~~g~tii~vtH~~~~~~ 202 (229)
|||||.||..-+..+.+.. .+.++.|..+|+||||..++.
T Consensus 159 DEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp 199 (213)
T COG4136 159 DEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP 199 (213)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC
Confidence 9999999999888887755 446777999999999987765
No 334
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=1e-40 Score=320.64 Aligned_cols=182 Identities=24% Similarity=0.347 Sum_probs=151.9
Q ss_pred CCcEEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067 8 LPRLLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ 86 (229)
Q Consensus 8 ~~~l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 86 (229)
.++|+++||++.|+ ++.+|+|+||+|.+|++++|+||||||||||||+|+|+++|++|+|++++. ..
T Consensus 506 ~~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~------------~~ 573 (718)
T PLN03073 506 PPIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK------------VR 573 (718)
T ss_pred CceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc------------ee
Confidence 36899999999996 457999999999999999999999999999999999999999999998541 25
Q ss_pred ceEeecccccCCCCCHHHhHHHHH-H-hc-CccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067 87 LNWLSLKDAVKEKFTVLDNVQWFE-V-LE-GKQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARLLAIDRPIWLL 162 (229)
Q Consensus 87 ~~~~~~~~~~~~~~tv~e~l~~~~-~-~~-~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~illl 162 (229)
++|++|+. ...+++.++..+.. . .. .....+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||
T Consensus 574 igyv~Q~~--~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLL 651 (718)
T PLN03073 574 MAVFSQHH--VDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLL 651 (718)
T ss_pred EEEEeccc--cccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 78998864 23445555533221 1 11 1234567889999997 467999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 163 DEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 163 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
||||++||+.+++.+.+.+..+ +.|||+||||++++..++|
T Consensus 652 DEPT~~LD~~s~~~l~~~L~~~---~gtvIivSHd~~~i~~~~d 692 (718)
T PLN03073 652 DEPSNHLDLDAVEALIQGLVLF---QGGVLMVSHDEHLISGSVD 692 (718)
T ss_pred cCCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCHHHHHHhCC
Confidence 9999999999999888877664 3499999999999998775
No 335
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=8.2e-41 Score=342.87 Aligned_cols=190 Identities=26% Similarity=0.329 Sum_probs=165.8
Q ss_pred cEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 10 RLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 10 ~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
.|+++||+++|.+ .++|+||||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++...+. ...+.++
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l-~~LR~~I 1386 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGL-RELRRQF 1386 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCH-HHHHhcc
Confidence 5999999999954 459999999999999999999999999999999999999999999999999987654 4577899
Q ss_pred eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhc-----------CCCCCCChhHHHHHHHHHHHhcC
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAK-----------EKARMLSMGQRKRLQLARLLAID 156 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGqkqRv~lAral~~~ 156 (229)
+++||++.+|.. |+++|+..+. ....+++.++++.+++.++.. ....+||||||||++|||||+++
T Consensus 1387 ~iVpQdp~LF~g-TIreNIdp~~--~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~ 1463 (1560)
T PTZ00243 1387 SMIPQDPVLFDG-TVRQNVDPFL--EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKK 1463 (1560)
T ss_pred eEECCCCccccc-cHHHHhCccc--CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcC
Confidence 999999999876 9999996532 123456778888888865532 34568999999999999999996
Q ss_pred -CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067 157 -RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA 204 (229)
Q Consensus 157 -p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~ 204 (229)
|+|||||||||+||.++.+.+.+.+++.. +++|+|+|+|+++.+.++
T Consensus 1464 ~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~ti~~~ 1511 (1560)
T PTZ00243 1464 GSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLHTVAQY 1511 (1560)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHHHHHhC
Confidence 89999999999999999999999998753 479999999999998774
No 336
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.1e-41 Score=330.79 Aligned_cols=191 Identities=28% Similarity=0.414 Sum_probs=168.5
Q ss_pred cEEEEeEEEEeCC---eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067 10 RLLLKNVSCMRNA---QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ 86 (229)
Q Consensus 10 ~l~l~~l~~~~~~---~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 86 (229)
.++++||+|.|+. .++|+|+||++++|+.+||||||||||||.+.+|-.+|.|++|.|.+||+++...+. ...|.+
T Consensus 987 ~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl-~~LR~~ 1065 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNL-KWLRKQ 1065 (1228)
T ss_pred EEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCH-HHHHHh
Confidence 5999999999964 569999999999999999999999999999999999999999999999999988764 457889
Q ss_pred ceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCCh-----------hhcCCCCCCChhHHHHHHHHHHHhc
Q 027067 87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGR-----------LAKEKARMLSMGQRKRLQLARLLAI 155 (229)
Q Consensus 87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqRv~lAral~~ 155 (229)
++.|.|+|.+|.. |++|||.|+.. .-.++++.++++..+..+ ....+..+||||||||+|||||+++
T Consensus 1066 i~lVsQEP~LF~~-TIrENI~YG~~-~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilR 1143 (1228)
T KOG0055|consen 1066 IGLVSQEPVLFNG-TIRENIAYGSE-EVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILR 1143 (1228)
T ss_pred cceeccCchhhcc-cHHHHHhccCC-CCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHc
Confidence 9999999999866 99999999821 124456667777655443 3356678999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067 156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA 204 (229)
Q Consensus 156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~ 204 (229)
||+||||||.||+||.++.+.+.+.|.... .|+|.|+|+|+++.++++
T Consensus 1144 nPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLSTIqna 1191 (1228)
T KOG0055|consen 1144 NPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLSTIQNA 1191 (1228)
T ss_pred CCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchhhhhcC
Confidence 999999999999999999999999999875 489999999999999986
No 337
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=8.5e-41 Score=342.82 Aligned_cols=191 Identities=27% Similarity=0.385 Sum_probs=166.1
Q ss_pred CcEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067 9 PRLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ 86 (229)
Q Consensus 9 ~~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 86 (229)
..++++||+++|.. .++|+||||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+...+. ...+.+
T Consensus 1283 g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~-~~LR~~ 1361 (1522)
T TIGR00957 1283 GRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGL-HDLRFK 1361 (1522)
T ss_pred CcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCH-HHHHhc
Confidence 46999999999964 479999999999999999999999999999999999999999999999999987764 457789
Q ss_pred ceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhh-----------cCCCCCCChhHHHHHHHHHHHhc
Q 027067 87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLA-----------KEKARMLSMGQRKRLQLARLLAI 155 (229)
Q Consensus 87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral~~ 155 (229)
++++||++.+|.. |+++|+..+. ...+++..++++.+++.++. ......||||||||++|||||++
T Consensus 1362 i~iVpQdp~LF~g-TIr~NLdp~~--~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr 1438 (1522)
T TIGR00957 1362 ITIIPQDPVLFSG-SLRMNLDPFS--QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLR 1438 (1522)
T ss_pred CeEECCCCcccCc-cHHHHcCccc--CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHc
Confidence 9999999999987 9999997432 12344566778877765443 34457899999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067 156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA 204 (229)
Q Consensus 156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~ 204 (229)
+|+|||||||||+||.++.+.+.+.+++.. +++|+|+|+|+++.+.++
T Consensus 1439 ~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~ti~~~ 1486 (1522)
T TIGR00957 1439 KTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLNTIMDY 1486 (1522)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHhC
Confidence 999999999999999999999999998753 479999999999998885
No 338
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=2e-41 Score=319.98 Aligned_cols=185 Identities=20% Similarity=0.244 Sum_probs=152.9
Q ss_pred eEEEEeCCe-eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEE-----------EcCEeCCCCch-hh
Q 027067 15 NVSCMRNAQ-QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEIL-----------WNGHDITQSGI-FH 81 (229)
Q Consensus 15 ~l~~~~~~~-~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~-----------~~g~~~~~~~~-~~ 81 (229)
+++++|+++ .+|++++ .+++||++||+||||||||||+|+|+|+++|++|+|. ++|+++..... ..
T Consensus 78 ~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~ 156 (590)
T PRK13409 78 EPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLY 156 (590)
T ss_pred CceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHh
Confidence 378899874 6999999 9999999999999999999999999999999999997 88887643110 00
Q ss_pred hhhhcceEeec----ccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCC
Q 027067 82 QYKLQLNWLSL----KDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDR 157 (229)
Q Consensus 82 ~~~~~~~~~~~----~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 157 (229)
.....+++.+| .+.++. .||.|++.+.. ....+.++++.+++.+..++++.+|||||||||+||+||+.+|
T Consensus 157 ~~~~~~~~~~q~~~~~p~~~~-~tv~e~l~~~~----~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p 231 (590)
T PRK13409 157 NGEIKVVHKPQYVDLIPKVFK-GKVRELLKKVD----ERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDA 231 (590)
T ss_pred ccCcceeecccchhhhhhhhc-chHHHHHHhhh----HHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 01122344444 333333 28999886431 1235678899999998899999999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 158 PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
++|||||||++||+.+++.+.++++++++ |.|||++|||++++...+|
T Consensus 232 ~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~~l~~~~D 279 (590)
T PRK13409 232 DFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLAVLDYLAD 279 (590)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999999999999987 9999999999999988765
No 339
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=1.7e-40 Score=315.79 Aligned_cols=182 Identities=25% Similarity=0.367 Sum_probs=159.5
Q ss_pred CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCC---ccEEEEcCEeCCCCchhhhhhhcceEeecccccC
Q 027067 21 NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPS---AGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVK 97 (229)
Q Consensus 21 ~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (229)
+++++|+|+|+++++||+++|+|||||||||||++|+|..+|. +|+|.++|.++.. ...++.++|++|++.++
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~----~~~~~~i~yv~Q~~~~~ 111 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDA----KEMRAISAYVQQDDLFI 111 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCH----HHHhhhceeeccccccC
Confidence 3577999999999999999999999999999999999999885 7999999998753 23566799999999999
Q ss_pred CCCCHHHhHHHHHHhcCc--------cccHHHHHHHhCCChhhcCCCC------CCChhHHHHHHHHHHHhcCCCeEEEe
Q 027067 98 EKFTVLDNVQWFEVLEGK--------QGNSLPALELMGLGRLAKEKAR------MLSMGQRKRLQLARLLAIDRPIWLLD 163 (229)
Q Consensus 98 ~~~tv~e~l~~~~~~~~~--------~~~~~~~l~~~~l~~~~~~~~~------~LSgGqkqRv~lAral~~~p~illlD 163 (229)
+.+||+||+.+....+.. ...+.++++.+|+.+..+..+. .|||||||||+||++|+.+|++++||
T Consensus 112 ~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllD 191 (617)
T TIGR00955 112 PTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCD 191 (617)
T ss_pred ccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEee
Confidence 999999999987654311 1235678999999888888776 59999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChh-hHHhhhc
Q 027067 164 EPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPI-QIEDAMN 206 (229)
Q Consensus 164 EPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~~ 206 (229)
|||+|||..+...+.+.+++++++|+|||+++|+++ ++.+.+|
T Consensus 192 EPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D 235 (617)
T TIGR00955 192 EPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFD 235 (617)
T ss_pred CCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhc
Confidence 999999999999999999999878999999999985 6666664
No 340
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=2.3e-40 Score=298.36 Aligned_cols=207 Identities=28% Similarity=0.414 Sum_probs=170.5
Q ss_pred CCcEEEEeEEEEeC--CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhh
Q 027067 8 LPRLLLKNVSCMRN--AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL 85 (229)
Q Consensus 8 ~~~l~l~~l~~~~~--~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 85 (229)
...|.++++++--. .+++++++||++.+||.+|||||||||||||.|+|.|..+|.+|.|++||-++.+++. ++.-+
T Consensus 332 ~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~-e~lG~ 410 (580)
T COG4618 332 QGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDR-EQLGR 410 (580)
T ss_pred CceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCH-HHhcc
Confidence 35699999998653 4689999999999999999999999999999999999999999999999999987764 45667
Q ss_pred cceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCC-----------ChhhcCCCCCCChhHHHHHHHHHHHh
Q 027067 86 QLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGL-----------GRLAKEKARMLSMGQRKRLQLARLLA 154 (229)
Q Consensus 86 ~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGqkqRv~lAral~ 154 (229)
.+||+||+-.+|+. ||.|||.-+... .+.+.+.++.+..|. +.........||||||||++|||||.
T Consensus 411 hiGYLPQdVeLF~G-TIaeNIaRf~~~-~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlY 488 (580)
T COG4618 411 HIGYLPQDVELFDG-TIAENIARFGEE-ADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALY 488 (580)
T ss_pred ccCcCcccceecCC-cHHHHHHhcccc-CCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHc
Confidence 89999999999988 999999754321 122234444443333 33334456799999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh-----hccCCCCCCCCcc
Q 027067 155 IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA-----MNLRLPPRFPRRM 217 (229)
Q Consensus 155 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~-----~~~~~~~~~~~~~ 217 (229)
.+|.+++||||-|+||.+....+.+.|...+++|.|+|+|||.++.+..+ ++..-...|+.+-
T Consensus 489 G~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~ 556 (580)
T COG4618 489 GDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPRE 556 (580)
T ss_pred CCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHH
Confidence 99999999999999999999999999999999999999999999887664 2333335566663
No 341
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=7.7e-40 Score=333.06 Aligned_cols=193 Identities=25% Similarity=0.337 Sum_probs=165.7
Q ss_pred cEEEEeEEEEeC-------------CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC--CccEEEEcCEeC
Q 027067 10 RLLLKNVSCMRN-------------AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP--SAGEILWNGHDI 74 (229)
Q Consensus 10 ~l~l~~l~~~~~-------------~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p--~~G~I~~~g~~~ 74 (229)
.+.++||++... ++.+|+|||+++++|++++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 589999998752 34799999999999999999999999999999999999763 689999999876
Q ss_pred CCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHHhcC----c----cccHHHHHHHhCCChhhcCCC-----CCCCh
Q 027067 75 TQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG----K----QGNSLPALELMGLGRLAKEKA-----RMLSM 141 (229)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~----~----~~~~~~~l~~~~l~~~~~~~~-----~~LSg 141 (229)
.. ...++.++|++|++.+++.+||+||+.+....+. . ...+.++++.++|.+..++.+ ..|||
T Consensus 947 ~~----~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSg 1022 (1470)
T PLN03140 947 KQ----ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLST 1022 (1470)
T ss_pred Ch----HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCH
Confidence 42 1234568999999999999999999988654321 1 123567899999998888876 58999
Q ss_pred hHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChh-hHHhhhc
Q 027067 142 GQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPI-QIEDAMN 206 (229)
Q Consensus 142 GqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~~ 206 (229)
||||||+||++|+.+|++|+|||||+|||..++..+.+.+++++++|+|||++||+++ ++.+.+|
T Consensus 1023 GerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D 1088 (1470)
T PLN03140 1023 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1088 (1470)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCC
Confidence 9999999999999999999999999999999999999999999888999999999998 4555544
No 342
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=7.7e-40 Score=288.36 Aligned_cols=204 Identities=22% Similarity=0.265 Sum_probs=172.3
Q ss_pred CCcEEEEeEEEEeC-----------CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCC
Q 027067 8 LPRLLLKNVSCMRN-----------AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQ 76 (229)
Q Consensus 8 ~~~l~l~~l~~~~~-----------~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~ 76 (229)
.+.++.++|.+.|. ...++++|||++++||.+||+|+||||||||-++|.++++++ |+|.|+|+++..
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~ 352 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDG 352 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccc
Confidence 46799999999883 146899999999999999999999999999999999999876 999999999986
Q ss_pred Cchh--hhhhhcceEeeccc--ccCCCCCHHHhHHHHHHhcC-------ccccHHHHHHHhCCC-hhhcCCCCCCChhHH
Q 027067 77 SGIF--HQYKLQLNWLSLKD--AVKEKFTVLDNVQWFEVLEG-------KQGNSLPALELMGLG-RLAKEKARMLSMGQR 144 (229)
Q Consensus 77 ~~~~--~~~~~~~~~~~~~~--~~~~~~tv~e~l~~~~~~~~-------~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqk 144 (229)
.+.. .-.++++-.++|+| ++.|.+||.+-+.-+..... ...++.++|+.+||+ ..++++|+++|||||
T Consensus 353 ~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQR 432 (534)
T COG4172 353 LSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQR 432 (534)
T ss_pred cChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchh
Confidence 5432 12456677788876 68899999998876544322 124567899999997 568999999999999
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhccCCCCC
Q 027067 145 KRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMNLRLPPR 212 (229)
Q Consensus 145 qRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~~~~~~~ 212 (229)
||++||||++.+|++++||||||+||..-+..+.++++.+.+ .|.+-+++|||+..+.-.++.-+..+
T Consensus 433 QRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~ 501 (534)
T COG4172 433 QRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMR 501 (534)
T ss_pred hHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEe
Confidence 999999999999999999999999999999999999999855 48899999999999988876544433
No 343
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=9.4e-40 Score=334.47 Aligned_cols=190 Identities=22% Similarity=0.318 Sum_probs=164.8
Q ss_pred CcEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067 9 PRLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ 86 (229)
Q Consensus 9 ~~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 86 (229)
..|+++||+++|.. .++|+||||+|++||.+||+|+||||||||+++|+|+++ ++|+|++||.++...+. ...+.+
T Consensus 1216 g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~-~~lR~~ 1293 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTL-QTWRKA 1293 (1490)
T ss_pred CeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCH-HHHHhc
Confidence 46999999999953 689999999999999999999999999999999999997 79999999999987653 457789
Q ss_pred ceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcC-----------CCCCCChhHHHHHHHHHHHhc
Q 027067 87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKE-----------KARMLSMGQRKRLQLARLLAI 155 (229)
Q Consensus 87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGqkqRv~lAral~~ 155 (229)
++++||++.+|.. |+++|+..+. ...+++..++++.+++.+...+ ....||||||||++|||||++
T Consensus 1294 is~IpQdp~LF~G-TIR~NLdp~~--~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr 1370 (1490)
T TIGR01271 1294 FGVIPQKVFIFSG-TFRKNLDPYE--QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILS 1370 (1490)
T ss_pred eEEEeCCCccCcc-CHHHHhCccc--CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhC
Confidence 9999999999986 9999996432 1234567788888887654433 345799999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067 156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA 204 (229)
Q Consensus 156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~ 204 (229)
+|+|||||||||+||..+...+.+.|++.. +++|||+|||+++.+.++
T Consensus 1371 ~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~~ 1418 (1490)
T TIGR01271 1371 KAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVEALLEC 1418 (1490)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHhC
Confidence 999999999999999999999999998763 479999999999988874
No 344
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=2.5e-39 Score=262.87 Aligned_cols=147 Identities=27% Similarity=0.315 Sum_probs=124.6
Q ss_pred CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCC
Q 027067 22 AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFT 101 (229)
Q Consensus 22 ~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 101 (229)
.+++|+|+||+|++|++++|+||||||||||||++. +++|+|.++|... .. .+..+.|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~-~~-----~~~~~~~~~q--------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLP-KF-----SRNKLIFIDQ--------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCccc-cc-----ccccEEEEhH---------
Confidence 467899999999999999999999999999999996 3689999987521 11 1123455443
Q ss_pred HHHhHHHHHHhcCccccHHHHHHHhCCChh-hcCCCCCCChhHHHHHHHHHHHhcC--CCeEEEeCCCCCCCHHHHHHHH
Q 027067 102 VLDNVQWFEVLEGKQGNSLPALELMGLGRL-AKEKARMLSMGQRKRLQLARLLAID--RPIWLLDEPSVALDYDGVRLLE 178 (229)
Q Consensus 102 v~e~l~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGqkqRv~lAral~~~--p~illlDEPt~~LD~~~~~~l~ 178 (229)
.++++.+++... .++++.+||+|||||++||||++.+ |+++||||||++||+.+++.+.
T Consensus 68 ------------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~ 129 (176)
T cd03238 68 ------------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLL 129 (176)
T ss_pred ------------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHH
Confidence 246788888753 7899999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 179 YIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 179 ~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
+.++++++.|.|||++||+++++. .+|
T Consensus 130 ~~l~~~~~~g~tvIivSH~~~~~~-~~d 156 (176)
T cd03238 130 EVIKGLIDLGNTVILIEHNLDVLS-SAD 156 (176)
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHH-hCC
Confidence 999998777999999999998874 444
No 345
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.3e-39 Score=274.66 Aligned_cols=181 Identities=26% Similarity=0.371 Sum_probs=152.0
Q ss_pred eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEee-cccccCCCCCH
Q 027067 24 QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLS-LKDAVKEKFTV 102 (229)
Q Consensus 24 ~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~tv 102 (229)
.+++|+||+|++|++++++|||||||||+||+|+|++.|++|.|.++|.+.... .+.+.+.++++. |..++...+.+
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~--~~~~~~~~~~v~gqk~ql~Wdlp~ 115 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRR--REEYLRSIGLVMGQKLQLWWDLPA 115 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchh--HHHHHHHHHHHhhhhheeeeechh
Confidence 589999999999999999999999999999999999999999999999876542 234556666654 44556666666
Q ss_pred HHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHH
Q 027067 103 LDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLL 177 (229)
Q Consensus 103 ~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l 177 (229)
.+-+......+.. .++.....+.++++.+++.+++.||-|||.|+.||.||+++|+||+|||||-|||..++..+
T Consensus 116 ~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~i 195 (325)
T COG4586 116 LDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANI 195 (325)
T ss_pred hhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHH
Confidence 6655443333221 23455677889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067 178 EYIIAEHRK-KGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 178 ~~~l~~~~~-~g~tii~vtH~~~~~~~~~~ 206 (229)
.+++++..+ .+.||+++||+++.++..|+
T Consensus 196 r~Flke~n~~~~aTVllTTH~~~di~~lc~ 225 (325)
T COG4586 196 REFLKEYNEERQATVLLTTHIFDDIATLCD 225 (325)
T ss_pred HHHHHHHHHhhCceEEEEecchhhHHHhhh
Confidence 999999754 58999999999999999875
No 346
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=6.5e-39 Score=282.54 Aligned_cols=200 Identities=23% Similarity=0.321 Sum_probs=165.9
Q ss_pred CCCcEEEEeEEEEeC----CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC-----CccEEEEcCEeCCCC
Q 027067 7 PLPRLLLKNVSCMRN----AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP-----SAGEILWNGHDITQS 77 (229)
Q Consensus 7 ~~~~l~l~~l~~~~~----~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-----~~G~I~~~g~~~~~~ 77 (229)
+.+.|.++|+++.|+ ...++++|||+|++||.+||+|+||||||-..+.++|+++. -+|+|.|+|+++-..
T Consensus 3 ~~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~ 82 (534)
T COG4172 3 TMPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAA 82 (534)
T ss_pred CCcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcC
Confidence 346899999999995 67899999999999999999999999999999999999864 269999999998665
Q ss_pred chhhh---hhhcceEeeccc--ccCCCCCHHHhHHHHHHh----cC--ccccHHHHHHHhCCCh---hhcCCCCCCChhH
Q 027067 78 GIFHQ---YKLQLNWLSLKD--AVKEKFTVLDNVQWFEVL----EG--KQGNSLPALELMGLGR---LAKEKARMLSMGQ 143 (229)
Q Consensus 78 ~~~~~---~~~~~~~~~~~~--~~~~~~tv~e~l~~~~~~----~~--~~~~~~~~l~~~~l~~---~~~~~~~~LSgGq 143 (229)
+..+. .-.+|++++|+| ++.|-.|+...+.-.... .+ .+.++.++|+.+|+.+ .++.+|++|||||
T Consensus 83 se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGq 162 (534)
T COG4172 83 SERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQ 162 (534)
T ss_pred CHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcch
Confidence 43211 123689999997 456666766555432221 11 2345678899999953 4689999999999
Q ss_pred HHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 144 RKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 144 kqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
||||+||.||+++|++||.||||++||..-+..+.+++++++++ |+.++++|||+..+....|
T Consensus 163 RQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~AD 226 (534)
T COG4172 163 RQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFAD 226 (534)
T ss_pred hhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhh
Confidence 99999999999999999999999999999999999999998654 9999999999999988765
No 347
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.2e-38 Score=260.99 Aligned_cols=195 Identities=25% Similarity=0.299 Sum_probs=161.2
Q ss_pred cEEEEeEEEEeC-----CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhh
Q 027067 10 RLLLKNVSCMRN-----AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK 84 (229)
Q Consensus 10 ~l~l~~l~~~~~-----~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~ 84 (229)
|+.+.|+.+.|. .+++|+++|++|.+|+++.|+|.||||||||+++|+|-+.|++|+|.++|.++++.+..++ .
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~R-A 79 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKR-A 79 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHH-h
Confidence 467788887763 3679999999999999999999999999999999999999999999999999998765433 3
Q ss_pred hcceEeeccc--ccCCCCCHHHhHHHHHHhcC---c--------cccHHHHHHHh--CCChhhcCCCCCCChhHHHHHHH
Q 027067 85 LQLNWLSLKD--AVKEKFTVLDNVQWFEVLEG---K--------QGNSLPALELM--GLGRLAKEKARMLSMGQRKRLQL 149 (229)
Q Consensus 85 ~~~~~~~~~~--~~~~~~tv~e~l~~~~~~~~---~--------~~~~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~l 149 (229)
..++-++|+| ..++.+|+.||+.++....+ . ....++.++.+ |++..++.++.-|||||||-+++
T Consensus 80 ~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL 159 (263)
T COG1101 80 NLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSL 159 (263)
T ss_pred hHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHH
Confidence 3456677876 46889999999987643211 0 11123445554 45678899999999999999999
Q ss_pred HHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhh
Q 027067 150 ARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAM 205 (229)
Q Consensus 150 Aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~ 205 (229)
+.|-+..|+||+|||-|++|||...+.++++-.++.+ .+.|.+||||+++.+-++.
T Consensus 160 ~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG 216 (263)
T COG1101 160 LMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYG 216 (263)
T ss_pred HHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhC
Confidence 9999999999999999999999999999998888654 4679999999998887764
No 348
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=1.6e-38 Score=295.04 Aligned_cols=184 Identities=26% Similarity=0.372 Sum_probs=158.9
Q ss_pred CCCcEEEEeEEEEeCC-eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhh
Q 027067 7 PLPRLLLKNVSCMRNA-QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL 85 (229)
Q Consensus 7 ~~~~l~l~~l~~~~~~-~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 85 (229)
+.+.++++|+++.|++ +.+++++||.|.+|+.+||+||||+|||||||+|+|...|.+|+|.+.- . .
T Consensus 318 g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~-~-----------v 385 (530)
T COG0488 318 GKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGE-T-----------V 385 (530)
T ss_pred CCeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCC-c-----------e
Confidence 4568999999999965 6999999999999999999999999999999999999999999998842 1 2
Q ss_pred cceEeeccc-ccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEe
Q 027067 86 QLNWLSLKD-AVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLD 163 (229)
Q Consensus 86 ~~~~~~~~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~illlD 163 (229)
+++|..|+. .+.+..|+.|++.-.... ..+..++..|..|++. +...+++..||||||.|+.||+.++.+|++||||
T Consensus 386 ~igyf~Q~~~~l~~~~t~~d~l~~~~~~-~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLD 464 (530)
T COG0488 386 KIGYFDQHRDELDPDKTVLEELSEGFPD-GDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLD 464 (530)
T ss_pred EEEEEEehhhhcCccCcHHHHHHhhCcc-ccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEc
Confidence 578888876 344666898887643211 1145678899999995 5678999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 164 EPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 164 EPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
||||+||..+.+.+.+.|..+ ..|||+||||..+++..++
T Consensus 465 EPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr~Fl~~va~ 504 (530)
T COG0488 465 EPTNHLDIESLEALEEALLDF---EGTVLLVSHDRYFLDRVAT 504 (530)
T ss_pred CCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCHHHHHhhcc
Confidence 999999999999999999887 4699999999999999874
No 349
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=1.5e-38 Score=305.68 Aligned_cols=195 Identities=22% Similarity=0.338 Sum_probs=147.1
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCC---CCCccEEEEcCEeCCCCc--h----
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS---KPSAGEILWNGHDITQSG--I---- 79 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~---~p~~G~I~~~g~~~~~~~--~---- 79 (229)
.+|+++|++++|+++.+|+|+||+|.+|+++||+|+||||||||||+|+|.. .|++|+|.+.++.+.... .
T Consensus 176 ~~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v 255 (718)
T PLN03073 176 KDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCV 255 (718)
T ss_pred eeEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHH
Confidence 4699999999999989999999999999999999999999999999999964 578999987665432110 0
Q ss_pred -------hhhhhhcceEeecccccCCC-------------C---CHHHhHH----HHHHhc--CccccHHHHHHHhCCC-
Q 027067 80 -------FHQYKLQLNWLSLKDAVKEK-------------F---TVLDNVQ----WFEVLE--GKQGNSLPALELMGLG- 129 (229)
Q Consensus 80 -------~~~~~~~~~~~~~~~~~~~~-------------~---tv~e~l~----~~~~~~--~~~~~~~~~l~~~~l~- 129 (229)
.......+++++|.+.+... . .+.+-+. .+.... ..+.++.+++..+|+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~ 335 (718)
T PLN03073 256 LNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTP 335 (718)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCCh
Confidence 00011224444443221110 0 0001111 011111 1234566788899996
Q ss_pred hhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 130 RLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 130 ~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
+..++++.+|||||||||+||+||+.+|++|||||||++||+.+++++.++++.+ +.|||+||||.+++...++
T Consensus 336 ~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviivsHd~~~l~~~~d 409 (718)
T PLN03073 336 EMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVVSHAREFLNTVVT 409 (718)
T ss_pred HHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCHHHHHHhCC
Confidence 5678999999999999999999999999999999999999999999999999876 6799999999999988764
No 350
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=2.2e-38 Score=311.02 Aligned_cols=198 Identities=35% Similarity=0.503 Sum_probs=182.1
Q ss_pred CcEEEEeEEEEeCCee-eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 9 PRLLLKNVSCMRNAQQ-ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~-iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
..+.++|+++.|+.+. +++++|+.|++||+.|+.|+|||||||++|+|.|..+|++|+++++|.++.......+.++.+
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~i 642 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQL 642 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhc
Confidence 4689999999998877 999999999999999999999999999999999999999999999999987654434567889
Q ss_pred eEeecccccCCCCCHHHhHHHHHHhcCcc-----ccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQ-----GNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLL 162 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illl 162 (229)
||.||.+.+++.+|.+|++.+++..++.. ..+...++.+++.+..+++++.+|||+|+|+++|.|++.+|++++|
T Consensus 643 GyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~L 722 (885)
T KOG0059|consen 643 GYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILL 722 (885)
T ss_pred ccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEe
Confidence 99999999999999999999998877632 2356778999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 163 DEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 163 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
||||+|+||.+++.+++++.+.+++|+.||++||.+++.+..|+
T Consensus 723 DEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCt 766 (885)
T KOG0059|consen 723 DEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCT 766 (885)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhh
Confidence 99999999999999999999999887799999999999999875
No 351
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=3.4e-38 Score=321.06 Aligned_cols=182 Identities=20% Similarity=0.197 Sum_probs=153.4
Q ss_pred eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCC----CCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCC
Q 027067 23 QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS----KPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKE 98 (229)
Q Consensus 23 ~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~----~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (229)
+++|+|+|+++++||+++|+||||||||||||+|+|+. +|++|+|+++|+++.... ...+..++|++|++.+++
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~--~~~r~~i~yv~Q~d~~~~ 151 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK--KHYRGDVVYNAETDVHFP 151 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH--hhcCceeEEeccccccCC
Confidence 45999999999999999999999999999999999996 578999999999875321 224456999999999999
Q ss_pred CCCHHHhHHHHHHhcC--------cc-c---c-HHHHHHHhCCChhhcCC-----CCCCChhHHHHHHHHHHHhcCCCeE
Q 027067 99 KFTVLDNVQWFEVLEG--------KQ-G---N-SLPALELMGLGRLAKEK-----ARMLSMGQRKRLQLARLLAIDRPIW 160 (229)
Q Consensus 99 ~~tv~e~l~~~~~~~~--------~~-~---~-~~~~l~~~~l~~~~~~~-----~~~LSgGqkqRv~lAral~~~p~il 160 (229)
.+||+|++.+....+. .. + + .+++++.+||.+..+++ +..|||||||||+||++|+.+|+++
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 9999999998654321 01 1 1 23468889998777654 5689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCh-hhHHhhhc
Q 027067 161 LLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLP-IQIEDAMN 206 (229)
Q Consensus 161 llDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~-~~~~~~~~ 206 (229)
+|||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.+.+|
T Consensus 232 llDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D 279 (1394)
T TIGR00956 232 CWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFD 279 (1394)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhc
Confidence 999999999999999999999998764 89999999996 56666553
No 352
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.4e-37 Score=257.94 Aligned_cols=174 Identities=22% Similarity=0.282 Sum_probs=152.3
Q ss_pred eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCH
Q 027067 23 QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTV 102 (229)
Q Consensus 23 ~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv 102 (229)
.++|+||||++++||.+||+|+||||||||||+|+|.++|++|+|.++|+-.+- ..... .+.+.+|.
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~l------i~lg~-------Gf~pelTG 106 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPL------IELGA-------GFDPELTG 106 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehh------hhccc-------CCCcccch
Confidence 469999999999999999999999999999999999999999999999965321 11222 34577899
Q ss_pred HHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHH
Q 027067 103 LDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLL 177 (229)
Q Consensus 103 ~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l 177 (229)
+||+.+...+.+. .....+..+.-+|.++.++++.++|.||+-|+++|.|...+|+|||+||-.+.-|+.-++.-
T Consensus 107 reNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~ 186 (249)
T COG1134 107 RENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKC 186 (249)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHH
Confidence 9999886655432 23456778888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCcEEEEEeCChhhHHhhhccCC
Q 027067 178 EYIIAEHRKKGGIVIVATHLPIQIEDAMNLRL 209 (229)
Q Consensus 178 ~~~l~~~~~~g~tii~vtH~~~~~~~~~~~~~ 209 (229)
.+.+.++.+++.|||+||||++.+.+.||.-+
T Consensus 187 ~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i 218 (249)
T COG1134 187 LERLNELVEKNKTIVLVSHDLGAIKQYCDRAI 218 (249)
T ss_pred HHHHHHHHHcCCEEEEEECCHHHHHHhcCeeE
Confidence 99999998888999999999999999998554
No 353
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-37 Score=245.90 Aligned_cols=198 Identities=28% Similarity=0.370 Sum_probs=164.9
Q ss_pred cEEEEeEEEEe-----CC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEe----CCCCc
Q 027067 10 RLLLKNVSCMR-----NA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHD----ITQSG 78 (229)
Q Consensus 10 ~l~l~~l~~~~-----~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~----~~~~~ 78 (229)
.|.++||+|+| ++ -++++++||+++.|||+++-||||||||||||++-|.|.|++|+|++.-.. +....
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 58999999988 23 369999999999999999999999999999999999999999999996432 11111
Q ss_pred ---hhhhhhhcceEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHH
Q 027067 79 ---IFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQL 149 (229)
Q Consensus 79 ---~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~l 149 (229)
...-.+..+||++|.-...|..+..|.+.-.....+. ..++..++.++++. .++.-.|.++||||||||.|
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNI 163 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNI 163 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhh
Confidence 1222356799999988888888888877654433332 23456788999995 56788999999999999999
Q ss_pred HHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067 150 ARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 150 Aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~ 207 (229)
||.++.+-+||+|||||++||..+++.+.++|.+.+.+|..+|=+=||.+.-+..+|-
T Consensus 164 aRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR 221 (235)
T COG4778 164 ARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADR 221 (235)
T ss_pred hhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999998766666553
No 354
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.8e-37 Score=316.62 Aligned_cols=178 Identities=18% Similarity=0.266 Sum_probs=148.2
Q ss_pred cEEEEeEEEEeCC---eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067 10 RLLLKNVSCMRNA---QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ 86 (229)
Q Consensus 10 ~l~l~~l~~~~~~---~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 86 (229)
.++++|++++|++ +++|+|+||+|++||.++|+||+|||||||+++|+|+++|++|.+.. .+.+
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~-------------~~~~ 680 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV-------------IRGS 680 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEE-------------ecCc
Confidence 5999999999964 57999999999999999999999999999999999999999987631 2347
Q ss_pred ceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhh-----------cCCCCCCChhHHHHHHHHHHHhc
Q 027067 87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLA-----------KEKARMLSMGQRKRLQLARLLAI 155 (229)
Q Consensus 87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral~~ 155 (229)
++|++|++.++.. |++|||.++... .+++..++++.+++.+.. ..+...||||||||++||||+..
T Consensus 681 Iayv~Q~p~Lf~g-TIreNI~fg~~~--~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~ 757 (1495)
T PLN03232 681 VAYVPQVSWIFNA-TVRENILFGSDF--ESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYS 757 (1495)
T ss_pred EEEEcCccccccc-cHHHHhhcCCcc--CHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhc
Confidence 8999999998865 999999987532 344566777777764432 34566899999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHH-HHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067 156 DRPIWLLDEPSVALDYDGVRLL-EYIIAEHRKKGGIVIVATHLPIQIEDA 204 (229)
Q Consensus 156 ~p~illlDEPt~~LD~~~~~~l-~~~l~~~~~~g~tii~vtH~~~~~~~~ 204 (229)
+|+|+|||||||+||.+..+.+ .+.+... .+++|+|++||+++.+..+
T Consensus 758 ~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~~l~~a 806 (1495)
T PLN03232 758 NSDIYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLHFLPLM 806 (1495)
T ss_pred CCCEEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChhhHHhC
Confidence 9999999999999999977655 4556554 3579999999999877653
No 355
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-38 Score=283.54 Aligned_cols=192 Identities=23% Similarity=0.357 Sum_probs=160.9
Q ss_pred CcEEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 9 PRLLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 9 ~~l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
..++++||++.|. ++++|+||||++.+|+.+|++||||+||||++|++..+...++|.|.+||+|+..... ...+..+
T Consensus 536 G~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~-~SLRs~I 614 (790)
T KOG0056|consen 536 GKIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQ-SSLRSSI 614 (790)
T ss_pred CeEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHH-HHHHHhc
Confidence 4699999999994 6899999999999999999999999999999999999999999999999999875432 3467889
Q ss_pred eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHh-------CCCh----hhcCCCCCCChhHHHHHHHHHHHhcC
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELM-------GLGR----LAKEKARMLSMGQRKRLQLARLLAID 156 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~-------~l~~----~~~~~~~~LSgGqkqRv~lAral~~~ 156 (229)
|.+||+..+|.+ |+..||.+..... ..+++.++.+.. ++.+ ....+.-.|||||||||+|||+++.+
T Consensus 615 GVVPQDtvLFNd-TI~yNIryak~~A-sneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~ 692 (790)
T KOG0056|consen 615 GVVPQDTVLFND-TILYNIRYAKPSA-SNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKA 692 (790)
T ss_pred CcccCcceeecc-eeeeheeecCCCC-ChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcC
Confidence 999999888766 9999998764322 223333333333 3322 23456778999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067 157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA 204 (229)
Q Consensus 157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~ 204 (229)
|.+++|||.||+||..+.+.+...+..+++ ++|-|+|.|.++.+.++
T Consensus 693 P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLSTivnA 739 (790)
T KOG0056|consen 693 PSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLSTIVNA 739 (790)
T ss_pred CcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehheecc
Confidence 999999999999999999999999999865 67888999999888765
No 356
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.8e-37 Score=316.55 Aligned_cols=178 Identities=19% Similarity=0.323 Sum_probs=149.8
Q ss_pred CcEEEEeEEEEeCC---eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCc-cEEEEcCEeCCCCchhhhhh
Q 027067 9 PRLLLKNVSCMRNA---QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSA-GEILWNGHDITQSGIFHQYK 84 (229)
Q Consensus 9 ~~l~l~~l~~~~~~---~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~-G~I~~~g~~~~~~~~~~~~~ 84 (229)
+.++++|++++|+. +++|+|+||+|++||.++|+||+|||||||+++|+|.++|++ |+|.+.
T Consensus 613 ~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~-------------- 678 (1622)
T PLN03130 613 PAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIR-------------- 678 (1622)
T ss_pred CceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEc--------------
Confidence 36999999999963 679999999999999999999999999999999999999999 899752
Q ss_pred hcceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhh-----------cCCCCCCChhHHHHHHHHHHH
Q 027067 85 LQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLA-----------KEKARMLSMGQRKRLQLARLL 153 (229)
Q Consensus 85 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral 153 (229)
.+++|++|++.++.. |++|||.++... .+++..++++.+++.+.. ..+...|||||||||+||||+
T Consensus 679 ~~Iayv~Q~p~Lfng-TIreNI~fg~~~--d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAl 755 (1622)
T PLN03130 679 GTVAYVPQVSWIFNA-TVRDNILFGSPF--DPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAV 755 (1622)
T ss_pred CeEEEEcCccccCCC-CHHHHHhCCCcc--cHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHH
Confidence 358999999998865 999999987542 244566777777765432 345678999999999999999
Q ss_pred hcCCCeEEEeCCCCCCCHHHHHHH-HHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067 154 AIDRPIWLLDEPSVALDYDGVRLL-EYIIAEHRKKGGIVIVATHLPIQIEDA 204 (229)
Q Consensus 154 ~~~p~illlDEPt~~LD~~~~~~l-~~~l~~~~~~g~tii~vtH~~~~~~~~ 204 (229)
..+|+|+|||||||+||++..+.+ .+.+.... +++|+|+|||+++.+..+
T Consensus 756 y~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~~l~~a 806 (1622)
T PLN03130 756 YSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLHFLSQV 806 (1622)
T ss_pred hCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHhHHHhC
Confidence 999999999999999999876544 56666543 579999999999877654
No 357
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=3.6e-37 Score=316.18 Aligned_cols=177 Identities=22% Similarity=0.274 Sum_probs=147.7
Q ss_pred cEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 10 RLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 10 ~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
.++++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| ++
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~i 701 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG--------------SV 701 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC--------------EE
Confidence 6999999999974 5799999999999999999999999999999999999999999999976 37
Q ss_pred eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCC-----------hhhcCCCCCCChhHHHHHHHHHHHhcC
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLG-----------RLAKEKARMLSMGQRKRLQLARLLAID 156 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGqkqRv~lAral~~~ 156 (229)
+|++|++.++ +.|++||+.++.... .++..++++.+++. ....+++.+||||||||++||||++.+
T Consensus 702 ~yv~Q~~~l~-~~Ti~eNI~~g~~~~--~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~ 778 (1522)
T TIGR00957 702 AYVPQQAWIQ-NDSLRENILFGKALN--EKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSN 778 (1522)
T ss_pred EEEcCCcccc-CCcHHHHhhcCCccC--HHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 8999998876 469999998753221 12223333333332 234567889999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHH--HhCCcEEEEEeCChhhHHh
Q 027067 157 RPIWLLDEPSVALDYDGVRLLEYIIAEH--RKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 157 p~illlDEPt~~LD~~~~~~l~~~l~~~--~~~g~tii~vtH~~~~~~~ 203 (229)
|+++||||||++||+...+.+.+.+... ..+++|+|++||+++.+..
T Consensus 779 ~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~ 827 (1522)
T TIGR00957 779 ADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ 827 (1522)
T ss_pred CCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh
Confidence 9999999999999999998888777542 2347899999999988876
No 358
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.3e-37 Score=248.29 Aligned_cols=198 Identities=25% Similarity=0.347 Sum_probs=162.8
Q ss_pred CcEEEEeEEEEeC---------CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCch
Q 027067 9 PRLLLKNVSCMRN---------AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI 79 (229)
Q Consensus 9 ~~l~l~~l~~~~~---------~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~ 79 (229)
+.++++|++|.|. ...+++.|||++++|+.+||+|.||||||||.|+|+|+++|++|+|.+||+.+....+
T Consensus 3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy 82 (267)
T COG4167 3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDY 82 (267)
T ss_pred chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccch
Confidence 4689999998763 2358999999999999999999999999999999999999999999999999865443
Q ss_pred hhhhhhcceEeecccc--cCCCCCHHHhHHHHHHhcCc------cccHHHHHHHhCC-ChhhcCCCCCCChhHHHHHHHH
Q 027067 80 FHQYKLQLNWLSLKDA--VKEKFTVLDNVQWFEVLEGK------QGNSLPALELMGL-GRLAKEKARMLSMGQRKRLQLA 150 (229)
Q Consensus 80 ~~~~~~~~~~~~~~~~--~~~~~tv~e~l~~~~~~~~~------~~~~~~~l~~~~l-~~~~~~~~~~LSgGqkqRv~lA 150 (229)
....+.+-+++|+++ +.|.+.+-+-+..+..+... ..++.+.|.++|+ .+..+-+|+.||-||||||++|
T Consensus 83 -~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLA 161 (267)
T COG4167 83 -SFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALA 161 (267)
T ss_pred -HhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHH
Confidence 223456788888764 55666665555444333211 2345577899998 4678899999999999999999
Q ss_pred HHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhcc
Q 027067 151 RLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 151 ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~~ 207 (229)
|||+.+|+|+|.||..++||..-+..+.+++.++.+ .|.+.|+|+.++..+.+..|.
T Consensus 162 RALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~ 219 (267)
T COG4167 162 RALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQ 219 (267)
T ss_pred HHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhccc
Confidence 999999999999999999999998888888877765 499999999999999887653
No 359
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=9.5e-37 Score=289.05 Aligned_cols=187 Identities=27% Similarity=0.391 Sum_probs=164.8
Q ss_pred CcEEEEeEEEEeC-----CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC---CccEEEEcCEeCCCCchh
Q 027067 9 PRLLLKNVSCMRN-----AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP---SAGEILWNGHDITQSGIF 80 (229)
Q Consensus 9 ~~l~l~~l~~~~~-----~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p---~~G~I~~~g~~~~~~~~~ 80 (229)
..+.++|+++... .+++|++||.++++||+.||+||+||||||||++|+|-... .+|+|.+||+....
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~---- 99 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDS---- 99 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCch----
Confidence 3588889887663 36899999999999999999999999999999999999875 68999999966543
Q ss_pred hhhhhcceEeecccccCCCCCHHHhHHHHHHhcCc--------cccHHHHHHHhCCChhhcCCCC-----CCChhHHHHH
Q 027067 81 HQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK--------QGNSLPALELMGLGRLAKEKAR-----MLSMGQRKRL 147 (229)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~--------~~~~~~~l~~~~l~~~~~~~~~-----~LSgGqkqRv 147 (229)
+..+...+|+.|++.+++.+||+|++.+.+.++-. ..+++++++.+|+....|..++ .+||||||||
T Consensus 100 ~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRv 179 (613)
T KOG0061|consen 100 RSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRV 179 (613)
T ss_pred hhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHH
Confidence 34567789999999999999999999987765321 2356788999999988888876 5999999999
Q ss_pred HHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChh
Q 027067 148 QLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPI 199 (229)
Q Consensus 148 ~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~ 199 (229)
+||.-++.+|.||+|||||+|||..+...+.+.+++++++|+|||++-|.+.
T Consensus 180 sia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPs 231 (613)
T KOG0061|consen 180 SIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPS 231 (613)
T ss_pred HHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCc
Confidence 9999999999999999999999999999999999999888999999999974
No 360
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=100.00 E-value=1.5e-37 Score=241.20 Aligned_cols=133 Identities=35% Similarity=0.555 Sum_probs=117.4
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHh
Q 027067 26 LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDN 105 (229)
Q Consensus 26 L~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~ 105 (229)
|+||||+|++|++++|+|+||||||||+++|+|+.+|++|+|.++|+++.... ....+..++|+++++.+++.+|+.+|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~tv~~~ 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDID-IEELRRRIGYVPQDPQLFPGLTVREN 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSH-HHHHHHTEEEEESSHCHHTTSBHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccc-cccccccccccccccccccccccccc
Confidence 78999999999999999999999999999999999999999999999997633 23466789999999999999999998
Q ss_pred HHHHHHhcCccccHHHHHHHhCCChhhcCCC----CCCChhHHHHHHHHHHHhcCCCeEEEeCCCC
Q 027067 106 VQWFEVLEGKQGNSLPALELMGLGRLAKEKA----RMLSMGQRKRLQLARLLAIDRPIWLLDEPSV 167 (229)
Q Consensus 106 l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----~~LSgGqkqRv~lAral~~~p~illlDEPt~ 167 (229)
. ...+..++++.+++.+..++.+ .+||+||||||+|||||+.+|+++|||||||
T Consensus 80 ~--------~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 E--------SDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp H--------HHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred c--------ccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 1 1234667888888876666555 9999999999999999999999999999997
No 361
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.6e-37 Score=243.97 Aligned_cols=200 Identities=21% Similarity=0.244 Sum_probs=157.9
Q ss_pred CCCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeC-----CCCchhh
Q 027067 7 PLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI-----TQSGIFH 81 (229)
Q Consensus 7 ~~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~-----~~~~~~~ 81 (229)
..|.+++.++++.|+...-.++|||++.|||+.||+|+|||||||||+||++-+.|++|+|.+.-.+- ...+..+
T Consensus 3 ~~PLL~V~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 3 DKPLLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred CCcceeehhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence 34689999999999999999999999999999999999999999999999999999999999965331 1111111
Q ss_pred ---hhhhcceEeecccc--cCCCCCHHHhHH-----HHHHhcC-ccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHH
Q 027067 82 ---QYKLQLNWLSLKDA--VKEKFTVLDNVQ-----WFEVLEG-KQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQL 149 (229)
Q Consensus 82 ---~~~~~~~~~~~~~~--~~~~~tv~e~l~-----~~~~~~~-~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~l 149 (229)
-.+...+|+.|+|. +-...+.-.|+. .+...++ ....+.+|++.+.++ ...+..|.++||||+||+.|
T Consensus 83 RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQi 162 (258)
T COG4107 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQI 162 (258)
T ss_pred HHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHH
Confidence 12345788888764 222223333432 1222222 234567899999996 44688899999999999999
Q ss_pred HHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEeCChhhHHhhhc
Q 027067 150 ARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHR-KKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 150 Aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~-~~g~tii~vtH~~~~~~~~~~ 206 (229)
||-|+..|+++++||||.|||..-+..+.++++.+. +-+.++++||||+..+.-..+
T Consensus 163 ARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~ 220 (258)
T COG4107 163 ARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAD 220 (258)
T ss_pred HHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhh
Confidence 999999999999999999999999999999999975 458899999999987765544
No 362
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=3.9e-37 Score=313.33 Aligned_cols=181 Identities=24% Similarity=0.301 Sum_probs=154.0
Q ss_pred CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCC---ccEEEEcCEeCCCCchhhhhhhcceEeecccccCC
Q 027067 22 AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPS---AGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKE 98 (229)
Q Consensus 22 ~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (229)
++.+|+|+|+.|++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~----~~~~i~yv~Q~d~~~~ 252 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV----PRKTSAYISQNDVHVG 252 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc----ccceeEEecccccCCC
Confidence 356999999999999999999999999999999999999998 999999999875432 2457899999999999
Q ss_pred CCCHHHhHHHHHHhcC-------------cc--------c------------------cHHHHHHHhCCChhh-----cC
Q 027067 99 KFTVLDNVQWFEVLEG-------------KQ--------G------------------NSLPALELMGLGRLA-----KE 134 (229)
Q Consensus 99 ~~tv~e~l~~~~~~~~-------------~~--------~------------------~~~~~l~~~~l~~~~-----~~ 134 (229)
.+||+|++.+...... .+ . ...++++.+||.+.. ++
T Consensus 253 ~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~ 332 (1470)
T PLN03140 253 VMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDE 332 (1470)
T ss_pred cCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCc
Confidence 9999999988654321 00 0 024578889997654 56
Q ss_pred CCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCh-hhHHhhhc
Q 027067 135 KARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLP-IQIEDAMN 206 (229)
Q Consensus 135 ~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~-~~~~~~~~ 206 (229)
.+..|||||||||+||++|+.+|++++|||||+|||..+...+.+.++++++ .|+|+|+++|++ .++.+.+|
T Consensus 333 ~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD 406 (1470)
T PLN03140 333 MIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFD 406 (1470)
T ss_pred cccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhh
Confidence 7789999999999999999999999999999999999999999999999865 589999999996 46666654
No 363
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.5e-36 Score=310.95 Aligned_cols=163 Identities=25% Similarity=0.354 Sum_probs=135.6
Q ss_pred eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCH
Q 027067 23 QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTV 102 (229)
Q Consensus 23 ~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv 102 (229)
+++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++| .++|++|++.+++. |+
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g--------------~iayv~Q~~~l~~~-Ti 503 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG--------------RISFSPQTSWIMPG-TI 503 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC--------------EEEEEeCCCccCCc-cH
Confidence 4589999999999999999999999999999999999999999999987 37999999988875 99
Q ss_pred HHhHHHHHHhcCccccHHHHHHHhCCCh-----------hhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q 027067 103 LDNVQWFEVLEGKQGNSLPALELMGLGR-----------LAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDY 171 (229)
Q Consensus 103 ~e~l~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~ 171 (229)
+||+.++.... ..+..++++.+++.+ ....++.+|||||||||+||||++.+|+++||||||++||+
T Consensus 504 ~eNI~~g~~~~--~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~ 581 (1490)
T TIGR01271 504 KDNIIFGLSYD--EYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDV 581 (1490)
T ss_pred HHHHHhccccc--hHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 99998764221 112233333333322 23556889999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHhCCcEEEEEeCChhhHHh
Q 027067 172 DGVRLLEY-IIAEHRKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 172 ~~~~~l~~-~l~~~~~~g~tii~vtH~~~~~~~ 203 (229)
...+.+.+ .+..+. +++|+|++||+++.+..
T Consensus 582 ~~~~~i~~~~l~~~~-~~~tvilvtH~~~~~~~ 613 (1490)
T TIGR01271 582 VTEKEIFESCLCKLM-SNKTRILVTSKLEHLKK 613 (1490)
T ss_pred HHHHHHHHHHHHHHh-cCCeEEEEeCChHHHHh
Confidence 99988876 455554 48999999999988865
No 364
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=3.3e-35 Score=247.61 Aligned_cols=183 Identities=23% Similarity=0.271 Sum_probs=124.1
Q ss_pred EEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHH-HHHHCCCCCCccEEEEcC-------EeC---CCCchhhhhhhc
Q 027067 18 CMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFL-RMLAGFSKPSAGEILWNG-------HDI---TQSGIFHQYKLQ 86 (229)
Q Consensus 18 ~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl-~~i~Gl~~p~~G~I~~~g-------~~~---~~~~~~~~~~~~ 86 (229)
++..+..+|++|||+|++||+++|+||||||||||+ .++. .+|++.+.. ... ............
T Consensus 3 ~~~~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (226)
T cd03270 3 VRGAREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLS 77 (226)
T ss_pred eccchhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCC
Confidence 344567899999999999999999999999999996 4443 134332210 000 000000000011
Q ss_pred ceEeecccc--cCCCCCHH---HhHHHHHHhcC--ccccHHHHHHHhCCCh-hhcCCCCCCChhHHHHHHHHHHHhcCC-
Q 027067 87 LNWLSLKDA--VKEKFTVL---DNVQWFEVLEG--KQGNSLPALELMGLGR-LAKEKARMLSMGQRKRLQLARLLAIDR- 157 (229)
Q Consensus 87 ~~~~~~~~~--~~~~~tv~---e~l~~~~~~~~--~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~~p- 157 (229)
..+..+++. ..+..++. +...+...... ......+.++.+++.+ ..++++.+|||||||||+|||||+.+|
T Consensus 78 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~ 157 (226)
T cd03270 78 PAIAIDQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLT 157 (226)
T ss_pred ceEEecCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCC
Confidence 222223222 22333432 22222211111 1122356789999976 479999999999999999999999998
Q ss_pred -CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 158 -PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 158 -~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
++|||||||++||+..+..+.+++.+++++|.|||++||+++++. .+|
T Consensus 158 ~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~-~~d 206 (226)
T cd03270 158 GVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIR-AAD 206 (226)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHH-hCC
Confidence 599999999999999999999999998778999999999998864 554
No 365
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=2.9e-35 Score=302.06 Aligned_cols=167 Identities=28% Similarity=0.349 Sum_probs=135.3
Q ss_pred CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCC
Q 027067 21 NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKF 100 (229)
Q Consensus 21 ~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (229)
+++++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+. ..++|++|++.++ ..
T Consensus 671 ~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~--------------~~i~yv~Q~~~l~-~~ 735 (1560)
T PTZ00243 671 EPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE--------------RSIAYVPQQAWIM-NA 735 (1560)
T ss_pred CCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC--------------CeEEEEeCCCccC-CC
Confidence 45679999999999999999999999999999999999999999999762 2589999998876 46
Q ss_pred CHHHhHHHHHHhcC--cc-----ccHHHHHHHh--CCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q 027067 101 TVLDNVQWFEVLEG--KQ-----GNSLPALELM--GLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDY 171 (229)
Q Consensus 101 tv~e~l~~~~~~~~--~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~ 171 (229)
|++||+.++..... .. ....+.++.+ |+....++++.+|||||||||+||||++.+|+++||||||++||+
T Consensus 736 Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~ 815 (1560)
T PTZ00243 736 TVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDA 815 (1560)
T ss_pred cHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCH
Confidence 99999987532110 00 0112233444 666667888999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHhCCcEEEEEeCChhhHHh
Q 027067 172 DGVRLLEY-IIAEHRKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 172 ~~~~~l~~-~l~~~~~~g~tii~vtH~~~~~~~ 203 (229)
...+.+.+ ++... .+|+|+|++||+++.+..
T Consensus 816 ~~~~~i~~~~~~~~-~~~~TvIlvTH~~~~~~~ 847 (1560)
T PTZ00243 816 HVGERVVEECFLGA-LAGKTRVLATHQVHVVPR 847 (1560)
T ss_pred HHHHHHHHHHHHHh-hCCCEEEEEeCCHHHHHh
Confidence 97766654 44333 248999999999998865
No 366
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-35 Score=258.82 Aligned_cols=191 Identities=25% Similarity=0.341 Sum_probs=159.7
Q ss_pred cEEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 10 RLLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 10 ~l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
.+.+.+|++.|. .+++|+++||++++|+.++++||+|+||||++++|..++.+++|.|.++|+++.... .+..++.+|
T Consensus 262 ~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vt-q~slR~aIg 340 (497)
T COG5265 262 AVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVT-QQSLRRAIG 340 (497)
T ss_pred eEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhH-HHHHHHHhC
Confidence 488999999995 688999999999999999999999999999999999999999999999999986543 234577899
Q ss_pred EeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCCh-----------hhcCCCCCCChhHHHHHHHHHHHhcCC
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGR-----------LAKEKARMLSMGQRKRLQLARLLAIDR 157 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqRv~lAral~~~p 157 (229)
.+||+..+|.. |..-|+.++.... ..+++..+.+...+.+ ....+.-.|||||||||+|||+++.+|
T Consensus 341 ~VPQDtvLFND-ti~yni~ygr~~a-t~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p 418 (497)
T COG5265 341 IVPQDTVLFND-TIAYNIKYGRPDA-TAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNP 418 (497)
T ss_pred cCcccceehhh-hHHHHHhccCccc-cHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCC
Confidence 99999888765 8999988764322 2223334444443332 234556789999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067 158 PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA 204 (229)
Q Consensus 158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~ 204 (229)
+||+|||.||+||..+.+.+...+++.. .|+|.+++.|.++.+.++
T Consensus 419 ~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlsti~~a 464 (497)
T COG5265 419 PILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLSTIIDA 464 (497)
T ss_pred CEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhhccCC
Confidence 9999999999999999999999998875 588999999999998876
No 367
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=100.00 E-value=1.4e-34 Score=239.07 Aligned_cols=161 Identities=22% Similarity=0.286 Sum_probs=127.1
Q ss_pred eeee-eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCc---------cEEEEcCEeCCCCchhhhhhhcceEeec
Q 027067 23 QQIL-RHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSA---------GEILWNGHDITQSGIFHQYKLQLNWLSL 92 (229)
Q Consensus 23 ~~iL-~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~---------G~I~~~g~~~~~~~~~~~~~~~~~~~~~ 92 (229)
..-+ +++++++.+| +++|+||||||||||+++|+|+.++.. |++.+.|++.... .....+++++|
T Consensus 9 fr~~~~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~vfq 83 (197)
T cd03278 9 FKSFADKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP----ANFAEVTLTFD 83 (197)
T ss_pred CcCcCCCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC----CceEEEEEEEE
Confidence 3345 7889999999 999999999999999999999986653 4677777665321 12457899999
Q ss_pred ccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHh----cCCCeEEEeCCCCC
Q 027067 93 KDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLA----IDRPIWLLDEPSVA 168 (229)
Q Consensus 93 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~----~~p~illlDEPt~~ 168 (229)
++..+. .. ....++.++++. .+..++++.+||+|||||++||++++ .+|+++||||||++
T Consensus 84 ~~~~~~--~~-----------~~~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~ 147 (197)
T cd03278 84 NSDGRY--SI-----------ISQGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAA 147 (197)
T ss_pred cCCCce--eE-----------EehhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCccc
Confidence 876551 10 012345556665 45678899999999999999999997 46699999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 169 LDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 169 LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
||+..++.+.++++++++ +.|||++||+++.++ .+|
T Consensus 148 LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~~~~-~~d 183 (197)
T cd03278 148 LDDANVERFARLLKEFSK-ETQFIVITHRKGTME-AAD 183 (197)
T ss_pred CCHHHHHHHHHHHHHhcc-CCEEEEEECCHHHHh-hcc
Confidence 999999999999999865 689999999998764 444
No 368
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=8e-34 Score=282.66 Aligned_cols=192 Identities=27% Similarity=0.374 Sum_probs=166.6
Q ss_pred CCcEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhh
Q 027067 8 LPRLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL 85 (229)
Q Consensus 8 ~~~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 85 (229)
...++++|++.+|.. ..+|+||||+|++||.+||+|..|||||||+++|.++.+|.+|+|.+||.|+...+. .+.|.
T Consensus 1136 ~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL-~dLRs 1214 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGL-HDLRS 1214 (1381)
T ss_pred CCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccH-HHHHh
Confidence 356999999999954 579999999999999999999999999999999999999999999999999998875 56788
Q ss_pred cceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhh-----------cCCCCCCChhHHHHHHHHHHHh
Q 027067 86 QLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLA-----------KEKARMLSMGQRKRLQLARLLA 154 (229)
Q Consensus 86 ~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral~ 154 (229)
+++.+||+|.+|.+ |++.|+.-+... .+++..++|+.++|.+.. .....++|-||||.+||||||+
T Consensus 1215 rlsIIPQdPvLFsG-TvR~NLDPf~e~--sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALL 1291 (1381)
T KOG0054|consen 1215 RLSIIPQDPVLFSG-TVRFNLDPFDEY--SDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALL 1291 (1381)
T ss_pred cCeeeCCCCceecC-ccccccCccccc--CHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHh
Confidence 99999999999987 999998633221 234566777777665443 2345789999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067 155 IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA 204 (229)
Q Consensus 155 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~ 204 (229)
++++||+|||.||++|+++-..+.+.|++. =+++|||.+.|+++.+.++
T Consensus 1292 r~skILvLDEATAsVD~~TD~lIQ~tIR~~-F~dcTVltIAHRl~TVmd~ 1340 (1381)
T KOG0054|consen 1292 RKSKILVLDEATASVDPETDALIQKTIREE-FKDCTVLTIAHRLNTVMDS 1340 (1381)
T ss_pred ccCCEEEEecccccCChHHHHHHHHHHHHH-hcCCeEEEEeeccchhhhc
Confidence 999999999999999999999999988874 2379999999999999886
No 369
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=2.7e-33 Score=240.21 Aligned_cols=180 Identities=26% Similarity=0.409 Sum_probs=138.7
Q ss_pred eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH--------CC--CCCCcc-----------EEEEcCEeCCCCc---
Q 027067 23 QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLA--------GF--SKPSAG-----------EILWNGHDITQSG--- 78 (229)
Q Consensus 23 ~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~--------Gl--~~p~~G-----------~I~~~g~~~~~~~--- 78 (229)
...|+|||++|+.|.+++|+|+||||||||++.+. +. ..|..+ -|.++..++....
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 44699999999999999999999999999998652 11 012211 3566666654321
Q ss_pred ------hhhh-------------h---hhcceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCCh-hhcCC
Q 027067 79 ------IFHQ-------------Y---KLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGR-LAKEK 135 (229)
Q Consensus 79 ------~~~~-------------~---~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~ 135 (229)
.+.. + ...+.|...+...+..+|+.|++.|+..... ..+..++++.+||.. ..+++
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~-~~~~~~~L~~vgL~~l~l~~~ 166 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPK-IARKLQTLCDVGLGYIKLGQP 166 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhh-HHHHHHHHHHcCCchhhhcCc
Confidence 1111 0 1123344444555677899999988765432 234667899999987 57999
Q ss_pred CCCCChhHHHHHHHHHHHhcC---CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067 136 ARMLSMGQRKRLQLARLLAID---RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 136 ~~~LSgGqkqRv~lAral~~~---p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~ 203 (229)
+.+|||||+||++|||+|+.+ |+++||||||+|||+..++.+.+++.+++++|.|||++||+++.+..
T Consensus 167 ~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~ 237 (261)
T cd03271 167 ATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKC 237 (261)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 999999999999999999996 79999999999999999999999999998889999999999998863
No 370
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=100.00 E-value=4.4e-33 Score=236.20 Aligned_cols=188 Identities=21% Similarity=0.267 Sum_probs=133.5
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH----------------CCCCCCcc--------E
Q 027067 11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLA----------------GFSKPSAG--------E 66 (229)
Q Consensus 11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~----------------Gl~~p~~G--------~ 66 (229)
++++|. ++|++..++++++ |++++|+||||||||||+++|+ +++.+++| +
T Consensus 4 i~~~nf-ksy~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~ 77 (243)
T cd03272 4 VIIQGF-KSYKDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVE 77 (243)
T ss_pred EEEeCc-cCcccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEE
Confidence 445544 3578888888887 8899999999999999999998 55556666 6
Q ss_pred EEEcCEeCCCC--chhhhhhhcceEeecccccCC-CCCHHHhHHHHHHhcCccc------cHHHHHHHhCCChhhcCCCC
Q 027067 67 ILWNGHDITQS--GIFHQYKLQLNWLSLKDAVKE-KFTVLDNVQWFEVLEGKQG------NSLPALELMGLGRLAKEKAR 137 (229)
Q Consensus 67 I~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~tv~e~l~~~~~~~~~~~------~~~~~l~~~~l~~~~~~~~~ 137 (229)
|.+++.+-... ......++.+++++++..+++ ..|..|...+.....-... ......+.+++.+..++++.
T Consensus 78 i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~ 157 (243)
T cd03272 78 IIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQ 157 (243)
T ss_pred EEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhcccccccccc
Confidence 66655321100 000123445788777776766 3566665554433211110 01234445566666788999
Q ss_pred CCChhHHHHHHHHHHHhc----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 138 MLSMGQRKRLQLARLLAI----DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 138 ~LSgGqkqRv~lAral~~----~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
+||||||||++||||++. +|+++|+||||++||+.+++.+.+.+.++++ +.+||++||+.+ +.+.+|
T Consensus 158 ~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~~-~~~~~d 228 (243)
T cd03272 158 QLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRPE-LLEVAD 228 (243)
T ss_pred ccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHhhCC
Confidence 999999999999999973 5899999999999999999999999998865 788999898864 556655
No 371
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=6e-34 Score=227.07 Aligned_cols=187 Identities=21% Similarity=0.275 Sum_probs=156.2
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW 89 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 89 (229)
+++++||+..- -|-.+|.++..||++-+||||||||||||-.++|+.+ -+|+|.++|.++..... ....++-.|
T Consensus 3 l~qln~v~~~t----RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~-~sGsi~~~G~~l~~~~~-~eLArhRAY 76 (248)
T COG4138 3 LMQLNDVAEST----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEAWSA-TELARHRAY 76 (248)
T ss_pred eeeeccccccc----cccccccccccceEEEEECCCCccHHHHHHHHhCCCC-CCceEEECCcchhHHhH-hHHHHHHHH
Confidence 57888887643 3778999999999999999999999999999999975 68999999999876543 234456688
Q ss_pred eecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhc-------CCCeEEE
Q 027067 90 LSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAI-------DRPIWLL 162 (229)
Q Consensus 90 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~-------~p~illl 162 (229)
+.|+....+.+.|..++.+............++...+++++.+.+..++|||||-|||-+|..+++ ..++||+
T Consensus 77 LsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLll 156 (248)
T COG4138 77 LSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLL 156 (248)
T ss_pred HhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEe
Confidence 888877777788888887653322222345677888999999999999999999999999998765 3479999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHH
Q 027067 163 DEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIE 202 (229)
Q Consensus 163 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~ 202 (229)
|||.++||...+-.+..++..++..|.+|||++||++.--
T Consensus 157 DEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTL 196 (248)
T COG4138 157 DEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTL 196 (248)
T ss_pred cCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHH
Confidence 9999999999999999999999999999999999987543
No 372
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.6e-32 Score=270.87 Aligned_cols=181 Identities=27% Similarity=0.368 Sum_probs=153.8
Q ss_pred CCCCcEEEEeEEEEeCC---eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhh
Q 027067 6 PPLPRLLLKNVSCMRNA---QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQ 82 (229)
Q Consensus 6 ~~~~~l~l~~l~~~~~~---~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~ 82 (229)
++...++++|.+++++. .+.|+||||+|++|+.+||+|+-|||||+||.+|.|..+..+|+|.++|.
T Consensus 514 ~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs---------- 583 (1381)
T KOG0054|consen 514 AGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS---------- 583 (1381)
T ss_pred CCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe----------
Confidence 34567999999999854 44899999999999999999999999999999999999999999999873
Q ss_pred hhhcceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhh-----------cCCCCCCChhHHHHHHHHH
Q 027067 83 YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLA-----------KEKARMLSMGQRKRLQLAR 151 (229)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAr 151 (229)
++|++|.+.++.. ||+|||.|+..+. +++.+++++.+.|.... ..+.-+||||||||++|||
T Consensus 584 ----iaYv~Q~pWI~ng-TvreNILFG~~~d--~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLAR 656 (1381)
T KOG0054|consen 584 ----VAYVPQQPWIQNG-TVRENILFGSPYD--EERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLAR 656 (1381)
T ss_pred ----EEEeccccHhhCC-cHHHhhhcCcccc--HHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHH
Confidence 6899999988765 9999999986543 34566677777765332 4677899999999999999
Q ss_pred HHhcCCCeEEEeCCCCCCCHH-HHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067 152 LLAIDRPIWLLDEPSVALDYD-GVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA 204 (229)
Q Consensus 152 al~~~p~illlDEPt~~LD~~-~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~ 204 (229)
|+.++++|+|||.|+|++|.+ +++.+.+.+..+ -+++|+|+|||.+..+.++
T Consensus 657 AVY~~adIYLLDDplSAVDahvg~~if~~ci~~~-L~~KT~ILVTHql~~L~~a 709 (1381)
T KOG0054|consen 657 AVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGL-LRGKTVILVTHQLQFLPHA 709 (1381)
T ss_pred HHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhh-hcCCEEEEEeCchhhhhhC
Confidence 999999999999999999998 556777777554 3479999999998888775
No 373
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=100.00 E-value=4.4e-33 Score=237.91 Aligned_cols=188 Identities=22% Similarity=0.215 Sum_probs=135.0
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCC-ccEEEEcCE-eCCCCc-hhhhhhhcc
Q 027067 11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPS-AGEILWNGH-DITQSG-IFHQYKLQL 87 (229)
Q Consensus 11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~-~G~I~~~g~-~~~~~~-~~~~~~~~~ 87 (229)
++++|. ++|.+..++. .+. ..+++|+||||||||||+++|++++.++ .|++++.+. ++.... ........+
T Consensus 6 ~~~~~f-~~~~~~~~~~----~~~-~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v 79 (251)
T cd03273 6 IILDGF-KSYATRTVIS----GFD-PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASV 79 (251)
T ss_pred EEEeCc-cccCcCEeec----cCC-CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEE
Confidence 455554 4454433322 333 5699999999999999999999999886 468888775 332111 001123467
Q ss_pred eEeeccc---------ccCCCCCHHHhHHHHHHh----cC---ccccHHHHHHHhCCC--------------------hh
Q 027067 88 NWLSLKD---------AVKEKFTVLDNVQWFEVL----EG---KQGNSLPALELMGLG--------------------RL 131 (229)
Q Consensus 88 ~~~~~~~---------~~~~~~tv~e~l~~~~~~----~~---~~~~~~~~l~~~~l~--------------------~~ 131 (229)
.+++|++ .+.+.+||.+++...... .. ...++.++++.+++. +.
T Consensus 80 ~~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~ 159 (251)
T cd03273 80 TIVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGV 159 (251)
T ss_pred EEEEEcCCcccCcccccCCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHh
Confidence 7778764 345567887776542211 11 123456788999985 45
Q ss_pred hcCCCCCCChhHHHHHHHHHHHh----cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 132 AKEKARMLSMGQRKRLQLARLLA----IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 132 ~~~~~~~LSgGqkqRv~lAral~----~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
.++++.+||+|||||++||+||+ .+|+++|+||||++||+..++.+.+.++++. +|.|+|++||+.+.++ .+|
T Consensus 160 ~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~~~~~-~~d 236 (251)
T cd03273 160 WKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKEGMFN-NAN 236 (251)
T ss_pred hcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCHHHHH-hCC
Confidence 67899999999999999999998 5789999999999999999999999999885 4889999999965544 344
No 374
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.98 E-value=3.5e-32 Score=227.10 Aligned_cols=183 Identities=17% Similarity=0.124 Sum_probs=125.6
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEe-CCcEEEEEcCCCccHHHHHHHHHCC-CCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIH-DGGALVLTGTNGSGKSTFLRMLAGF-SKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~-~Ge~~~iiG~NGsGKSTLl~~i~Gl-~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
.|+++|+. +|.+. ++++|+.. +|++++|+||||||||||+++|++. +-+..+....+ ........ ......+
T Consensus 5 ~i~l~nf~-~y~~~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~-~~~~~~v 78 (213)
T cd03279 5 KLELKNFG-PFREE---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAP-GEDTAEV 78 (213)
T ss_pred EEEEECCc-CcCCc---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcC-CCccEEE
Confidence 47888888 55444 56677654 5899999999999999999999964 33444444332 00000000 1123346
Q ss_pred eEeecccccCCCCCHHHhHHHHHHhcCccccHH--HHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhc----------
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSL--PALELMGLGRLAKEKARMLSMGQRKRLQLARLLAI---------- 155 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~--~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~---------- 155 (229)
++.++.... .+++..+..+ ...... ..+...++.++.++++.+||+||+||++||||++.
T Consensus 79 ~~~f~~~~~--~~~~~r~~gl------~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~ 150 (213)
T cd03279 79 SFTFQLGGK--KYRVERSRGL------DYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGA 150 (213)
T ss_pred EEEEEECCe--EEEEEEecCC------CHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCC
Confidence 666655421 1112111100 001111 12344456678899999999999999999999985
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
+|+++||||||++||+.+++.+.+++.++++++.|||++||+++.+..+++
T Consensus 151 ~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~ 201 (213)
T cd03279 151 RLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQ 201 (213)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCc
Confidence 578999999999999999999999999987778999999999988877654
No 375
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.97 E-value=3.4e-33 Score=233.30 Aligned_cols=173 Identities=20% Similarity=0.279 Sum_probs=131.7
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067 11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL 90 (229)
Q Consensus 11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~ 90 (229)
|+++|.. +|+++.+++++++ ++++|+||||||||||+++|. ++.|.+... ....+++++
T Consensus 6 l~l~nfk-~~~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~~-----~~~~~i~~~ 64 (212)
T cd03274 6 LVLENFK-SYAGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRASK-----MRQKKLSDL 64 (212)
T ss_pred EEEECcc-cCCCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHHH-----hhhhhHHHH
Confidence 6777776 7889999999987 899999999999999999997 234433211 112357777
Q ss_pred ecccccCCCCCHHHhHHHHHHh--------cCc--cc-c----HHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhc
Q 027067 91 SLKDAVKEKFTVLDNVQWFEVL--------EGK--QG-N----SLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAI 155 (229)
Q Consensus 91 ~~~~~~~~~~tv~e~l~~~~~~--------~~~--~~-~----~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~ 155 (229)
++...+++.+++.++..++... .+. .. . ..++++.+++.+..++++..||+|||||++||+|++.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~ 144 (212)
T cd03274 65 IHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFAL 144 (212)
T ss_pred hcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHh
Confidence 7777777777777765443211 111 01 1 1345567788777888999999999999999999974
Q ss_pred ----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 156 ----DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 156 ----~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
+|+++++||||++||+.++..+.+.+++++ ++.|+|++||+. ++.+.+|
T Consensus 145 ~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~-~~~~~iivs~~~-~~~~~~d 197 (212)
T cd03274 145 HHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT-KNAQFIVISLRN-NMFELAD 197 (212)
T ss_pred cccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECcH-HHHHhCC
Confidence 579999999999999999999999999985 467899999995 5555555
No 376
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.97 E-value=2.7e-32 Score=247.47 Aligned_cols=192 Identities=27% Similarity=0.337 Sum_probs=151.2
Q ss_pred CCCcEEEEeEEEEeCCe-eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhh
Q 027067 7 PLPRLLLKNVSCMRNAQ-QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL 85 (229)
Q Consensus 7 ~~~~l~l~~l~~~~~~~-~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 85 (229)
+.|.+.++||+|.|.+. .++++++|-|..++.+++|||||||||||||++.|.+.|+.|.|.-.-...- ..+.+
T Consensus 386 p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~-----~~y~Q 460 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKL-----PRYNQ 460 (614)
T ss_pred CCCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccc-----hhhhh
Confidence 45789999999999765 6899999999999999999999999999999999999999999865322211 11111
Q ss_pred cceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeC
Q 027067 86 QLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDE 164 (229)
Q Consensus 86 ~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDE 164 (229)
+ +...+.-..++.|++.-........+.++.++.++||. +....++.+||+|||.||.+|+.++.+|.+|+|||
T Consensus 461 h-----~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDE 535 (614)
T KOG0927|consen 461 H-----LAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDE 535 (614)
T ss_pred h-----hHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecC
Confidence 1 11233444566666542111112334577889999997 66788999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhccCCCCC
Q 027067 165 PSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNLRLPPR 212 (229)
Q Consensus 165 Pt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~~~~~~ 212 (229)
||+|||..+...+.+.|+++ ..+||+||||...+.++.+ +++.+
T Consensus 536 PtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfrlI~qVae-Ei~~c 579 (614)
T KOG0927|consen 536 PTNHLDIETIDALAEAINEF---PGGVVLVSHDFRLISQVAE-EIWVC 579 (614)
T ss_pred CCcCCCchhHHHHHHHHhcc---CCceeeeechhhHHHHHHH-HhHhh
Confidence 99999999999999999877 4689999999988887754 34433
No 377
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.97 E-value=6.6e-31 Score=240.17 Aligned_cols=216 Identities=20% Similarity=0.300 Sum_probs=177.4
Q ss_pred CCCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067 7 PLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ 86 (229)
Q Consensus 7 ~~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 86 (229)
..+.++++|++... .++|+||++.+|||+||.|-=|||+|-|+++|.|..++++|+|+++|+++...++....+..
T Consensus 260 ~~~~l~v~~l~~~~----~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~G 335 (500)
T COG1129 260 GEPVLEVRNLSGGG----KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAG 335 (500)
T ss_pred CCcEEEEecCCCCC----ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcC
Confidence 45678999888543 58999999999999999999999999999999999999999999999999877665566778
Q ss_pred ceEeecc---cccCCCCCHHHhHHHHHH--hc-C--c-----cccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHH
Q 027067 87 LNWLSLK---DAVKEKFTVLDNVQWFEV--LE-G--K-----QGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARL 152 (229)
Q Consensus 87 ~~~~~~~---~~~~~~~tv~e~l~~~~~--~~-~--~-----~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAra 152 (229)
++|++.+ ..++..+++.+|+.+... .. . . ...+.++.+.+++. .-.+..+.+||||.||||.|||.
T Consensus 336 i~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarw 415 (500)
T COG1129 336 IAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARW 415 (500)
T ss_pred CEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHH
Confidence 9999965 468888999999977521 11 1 0 11234567778884 44678999999999999999999
Q ss_pred HhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc-------CCCCCCCCc-chHHhhhh
Q 027067 153 LAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL-------RLPPRFPRR-MTLVDMLD 224 (229)
Q Consensus 153 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~~ 224 (229)
|+.+|++|||||||.|.|..++..++++++++.++|++||++|.++.++...+|- .+...+... ++.+.+|.
T Consensus 416 L~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~~tee~im~ 495 (500)
T COG1129 416 LATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDREEATEEAIMA 495 (500)
T ss_pred HhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEeccccCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988753 222223332 56666665
Q ss_pred hc
Q 027067 225 RA 226 (229)
Q Consensus 225 ~~ 226 (229)
++
T Consensus 496 ~a 497 (500)
T COG1129 496 AA 497 (500)
T ss_pred Hh
Confidence 43
No 378
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.3e-31 Score=233.31 Aligned_cols=187 Identities=24% Similarity=0.304 Sum_probs=149.1
Q ss_pred CcEEEEeEEEEeCCe-eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 9 PRLLLKNVSCMRNAQ-QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~-~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
..++++||.+.|... .-+..||++|++||++-|+|.||||||||++++.|+++|++|+|++||++++.... .+|+.-+
T Consensus 321 ~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~l-edYR~Lf 399 (546)
T COG4615 321 KTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQL-EDYRKLF 399 (546)
T ss_pred cceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCH-HHHHHHH
Confidence 359999999999665 67899999999999999999999999999999999999999999999999987653 5677666
Q ss_pred eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChh---hcC--CCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRL---AKE--KARMLSMGQRKRLQLARLLAIDRPIWLL 162 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~---~~~--~~~~LSgGqkqRv~lAral~~~p~illl 162 (229)
+-++.+..+|+.+--.|+ ......+..+++++.+.+. .+. .+..||.|||+|+++.-|++-+.+|+++
T Consensus 400 SavFsDyhLF~~ll~~e~-------~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~ 472 (546)
T COG4615 400 SAVFSDYHLFDQLLGPEG-------KASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVL 472 (546)
T ss_pred HHHhhhHhhhHhhhCCcc-------CCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEe
Confidence 655555555443211111 0123345667777777543 333 3568999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEeCChhhHHh
Q 027067 163 DEPSVALDYDGVRLLEYI-IAEHRKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 163 DEPt~~LD~~~~~~l~~~-l~~~~~~g~tii~vtH~~~~~~~ 203 (229)
||=-+..||.-+++++.. +-.++++|+||+.||||-.-...
T Consensus 473 DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ 514 (546)
T COG4615 473 DEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIH 514 (546)
T ss_pred ehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhh
Confidence 999999999999888764 45578899999999999654443
No 379
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.97 E-value=3.2e-31 Score=220.14 Aligned_cols=156 Identities=24% Similarity=0.316 Sum_probs=118.4
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHH----CCCCCCccEEEEcCEeCCCCchhhhhhhcceEeeccc-----ccCC
Q 027067 28 HVNISIHDGGALVLTGTNGSGKSTFLRMLA----GFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKD-----AVKE 98 (229)
Q Consensus 28 ~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~----Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 98 (229)
..++++.+| +++|+||||||||||+++|. |...|++|.+..+.+.+... .....+.+.++++ .+..
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~----~~~~~v~~~f~~~~~~~~~v~r 89 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREG----EVRAQVKLAFENANGKKYTITR 89 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCC----CCcEEEEEEEEeCCCCEEEEEE
Confidence 344667777 99999999999999999995 99998888775222222211 1234567777665 3344
Q ss_pred CCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHH------HHHHHHHhcCCCeEEEeCCCCCCCHH
Q 027067 99 KFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKR------LQLARLLAIDRPIWLLDEPSVALDYD 172 (229)
Q Consensus 99 ~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqR------v~lAral~~~p~illlDEPt~~LD~~ 172 (229)
.+++++|+.+.. ..+.. ...++++.+||+||+|| +++|||++.+|+++|+||||++||+.
T Consensus 90 ~~~~~~~~~~~~-----~~~~~---------~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~ 155 (204)
T cd03240 90 SLAILENVIFCH-----QGESN---------WPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEE 155 (204)
T ss_pred EhhHhhceeeec-----hHHHH---------HHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHH
Confidence 457777775421 11111 23378899999999996 78999999999999999999999999
Q ss_pred HHH-HHHHHHHHHHhC-CcEEEEEeCChhhHH
Q 027067 173 GVR-LLEYIIAEHRKK-GGIVIVATHLPIQIE 202 (229)
Q Consensus 173 ~~~-~l~~~l~~~~~~-g~tii~vtH~~~~~~ 202 (229)
.++ .+.+++.+++++ +.|||++||+++.+.
T Consensus 156 ~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~ 187 (204)
T cd03240 156 NIEESLAEIIEERKSQKNFQLIVITHDEELVD 187 (204)
T ss_pred HHHHHHHHHHHHHHhccCCEEEEEEecHHHHh
Confidence 999 999999998766 789999999988764
No 380
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=6e-31 Score=237.60 Aligned_cols=178 Identities=25% Similarity=0.279 Sum_probs=131.8
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW 89 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 89 (229)
-|.+.+.+..||++.+|++-++++..|-.||++|+||+|||||||+|+. |.|.....+ + ..+. .+
T Consensus 80 Di~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~ve--q------E~~g-~~ 144 (582)
T KOG0062|consen 80 DIHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVE--Q------EVRG-DD 144 (582)
T ss_pred ceeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCch--h------heec-cc
Confidence 4889999999999999999999999999999999999999999999988 444332211 0 0000 01
Q ss_pred eec-ccccCCCCCHHHhHHHHHHhc-C-ccccHH-HHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeC
Q 027067 90 LSL-KDAVKEKFTVLDNVQWFEVLE-G-KQGNSL-PALELMGLG-RLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDE 164 (229)
Q Consensus 90 ~~~-~~~~~~~~tv~e~l~~~~~~~-~-~~~~~~-~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDE 164 (229)
++. ...+.....+.+.+.--..+. + ...++. .+|.-+|++ +...++..+||||-|.|++|||||..+||+|||||
T Consensus 145 t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDE 224 (582)
T KOG0062|consen 145 TEALQSVLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDE 224 (582)
T ss_pred hHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecC
Confidence 110 011122223333322111111 1 111222 378889996 55678899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhh
Q 027067 165 PSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAM 205 (229)
Q Consensus 165 Pt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~ 205 (229)
||++||..+..++.+.|..+ +.|+|+||||-+++..+|
T Consensus 225 PTNhLDv~av~WLe~yL~t~---~~T~liVSHDr~FLn~V~ 262 (582)
T KOG0062|consen 225 PTNHLDVVAVAWLENYLQTW---KITSLIVSHDRNFLNTVC 262 (582)
T ss_pred CcccchhHHHHHHHHHHhhC---CceEEEEeccHHHHHHHH
Confidence 99999999999999998776 479999999999998876
No 381
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.97 E-value=2.3e-30 Score=240.83 Aligned_cols=179 Identities=28% Similarity=0.381 Sum_probs=150.5
Q ss_pred CCcEEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067 8 LPRLLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ 86 (229)
Q Consensus 8 ~~~l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 86 (229)
...++++|+++.-+ +++.+++.||+|++||.+-|.||||||||||+|+|+|+.+.-+|+|.+- . ...
T Consensus 390 ~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P-----~-------~~~ 457 (604)
T COG4178 390 DHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMP-----A-------DSA 457 (604)
T ss_pred cceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecC-----C-------CCc
Confidence 35799999999875 4789999999999999999999999999999999999999989988552 0 123
Q ss_pred ceEeecccccCCCCCHHHhHHHHHHhc-CccccHHHHHHHhCCChhhcC------CCCCCChhHHHHHHHHHHHhcCCCe
Q 027067 87 LNWLSLKDAVKEKFTVLDNVQWFEVLE-GKQGNSLPALELMGLGRLAKE------KARMLSMGQRKRLQLARLLAIDRPI 159 (229)
Q Consensus 87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~l~~~~l~~~~~~------~~~~LSgGqkqRv~lAral~~~p~i 159 (229)
+-|+||.|.+... |.+|-+.++.... -..++..++|..+||.++.++ --..||+|||||+++||.++++|++
T Consensus 458 ~lflpQ~PY~p~G-tLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~ 536 (604)
T COG4178 458 LLFLPQRPYLPQG-TLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKW 536 (604)
T ss_pred eEEecCCCCCCCc-cHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCE
Confidence 6789999887766 9999998865432 234567789999999876543 2358999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhh
Q 027067 160 WLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQ 200 (229)
Q Consensus 160 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~ 200 (229)
++|||.|++||+.+...+++.+++.. .+.|||-|+|....
T Consensus 537 v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~tl 576 (604)
T COG4178 537 VFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPTL 576 (604)
T ss_pred EEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccchhh
Confidence 99999999999999999999887632 47999999998643
No 382
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=2.3e-30 Score=253.92 Aligned_cols=176 Identities=26% Similarity=0.388 Sum_probs=155.3
Q ss_pred CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC--CccEEEEcCEeCCCCchhhhhhhcceEeecccccCC
Q 027067 21 NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP--SAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKE 98 (229)
Q Consensus 21 ~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (229)
+.+++|+||+=-+.||..+||+|+|||||||||++|+|-..- .+|+|.++|.+..+ ..+++..||+.|++.-.+
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q----~tF~R~~GYvqQ~DiH~~ 877 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ----ETFARVSGYVEQQDIHSP 877 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch----hhhccccceeecccccCc
Confidence 457899999999999999999999999999999999997542 47999999998764 235678999999998889
Q ss_pred CCCHHHhHHHHHHhcCc-----c---ccHHHHHHHhCCChhhcCCCCC----CChhHHHHHHHHHHHhcCC-CeEEEeCC
Q 027067 99 KFTVLDNVQWFEVLEGK-----Q---GNSLPALELMGLGRLAKEKARM----LSMGQRKRLQLARLLAIDR-PIWLLDEP 165 (229)
Q Consensus 99 ~~tv~e~l~~~~~~~~~-----~---~~~~~~l~~~~l~~~~~~~~~~----LSgGqkqRv~lAral~~~p-~illlDEP 165 (229)
.+||+|-+.|.+.++.. + +.++++++.++|+++.+.-++. ||.+||+|+.||--|+.+| .||+||||
T Consensus 878 ~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEP 957 (1391)
T KOG0065|consen 878 ELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEP 957 (1391)
T ss_pred ccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCC
Confidence 99999999998776531 1 3367889999999888776665 9999999999999999999 99999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhh
Q 027067 166 SVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQ 200 (229)
Q Consensus 166 t~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~ 200 (229)
|||||..+.-.+.++++++...|.||+++-|.|+.
T Consensus 958 TSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~ 992 (1391)
T KOG0065|consen 958 TSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSI 992 (1391)
T ss_pred CCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcH
Confidence 99999999999999999999999999999999753
No 383
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.96 E-value=4e-29 Score=223.37 Aligned_cols=180 Identities=23% Similarity=0.273 Sum_probs=138.5
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW 89 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 89 (229)
.++..++.+.|++.+ |+-=.=+|..||+++++||||-||||+.++|+|.++|++|+ ..++ .++|
T Consensus 342 lv~y~~~~k~~g~F~-L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~-----------~vSy 405 (591)
T COG1245 342 LVEYPDLKKTYGDFK-LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL-----------KVSY 405 (591)
T ss_pred eeecchheeecCceE-EEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc-----------eEee
Confidence 455666666666443 33334466778999999999999999999999999999997 1111 2344
Q ss_pred eecccccCCCCCHHHhHHHHHHh-cCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 027067 90 LSLKDAVKEKFTVLDNVQWFEVL-EGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVA 168 (229)
Q Consensus 90 ~~~~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~ 168 (229)
-||.-......||.+.+.-.... .....-..++++.++|+...++++.+|||||.|||+||.||.+++++++||||.+.
T Consensus 406 KPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~ 485 (591)
T COG1245 406 KPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAY 485 (591)
T ss_pred cceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhh
Confidence 44443344566998876543221 11222345778899999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhh
Q 027067 169 LDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAM 205 (229)
Q Consensus 169 LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~ 205 (229)
||.+.+....+.|+.+.+ .++|.++|.||+-.+.-..
T Consensus 486 LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvs 523 (591)
T COG1245 486 LDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVS 523 (591)
T ss_pred ccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhh
Confidence 999999999999988754 4789999999987665544
No 384
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.96 E-value=2.7e-29 Score=228.10 Aligned_cols=195 Identities=26% Similarity=0.354 Sum_probs=134.8
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEE--cCEeCCCCchhhhh----
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW--NGHDITQSGIFHQY---- 83 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~--~g~~~~~~~~~~~~---- 83 (229)
-+.+.|+++.|.++.+++|+.|++.+|+.|||+|+|||||||+|++|.|-..|..-++.+ ..+.+.... .+..
T Consensus 75 dvk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~-~~av~~v~ 153 (614)
T KOG0927|consen 75 DVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSE-KQAVQAVV 153 (614)
T ss_pred cceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCch-HHHHHHHh
Confidence 499999999999999999999999999999999999999999999999999886544432 222221110 0000
Q ss_pred ------hhcceEeecccccC-CCCCHHHhHHHHHHhc---C--ccccHHHHHHHhCC-ChhhcCCCCCCChhHHHHHHHH
Q 027067 84 ------KLQLNWLSLKDAVK-EKFTVLDNVQWFEVLE---G--KQGNSLPALELMGL-GRLAKEKARMLSMGQRKRLQLA 150 (229)
Q Consensus 84 ------~~~~~~~~~~~~~~-~~~tv~e~l~~~~~~~---~--~~~~~~~~l~~~~l-~~~~~~~~~~LSgGqkqRv~lA 150 (229)
+..+.+...+..-. +...-.+-...+.... . .+.++..+|.-+|. .+..++....||||++.|++||
T Consensus 154 ~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLA 233 (614)
T KOG0927|consen 154 METDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALA 233 (614)
T ss_pred hhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHH
Confidence 00000000000000 0000000000001100 0 11123344555565 4678999999999999999999
Q ss_pred HHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067 151 RLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 151 ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~ 207 (229)
|+|..+|++|||||||+|||+.+..++.+.|..+.. .++++++|+.+++..+|..
T Consensus 234 r~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~--~~lVi~sh~QDfln~vCT~ 288 (614)
T KOG0927|consen 234 RALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR--IILVIVSHSQDFLNGVCTN 288 (614)
T ss_pred HHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC--ceEEEEecchhhhhhHhhh
Confidence 999999999999999999999999999999987642 2899999999999998853
No 385
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=2.1e-29 Score=206.43 Aligned_cols=198 Identities=16% Similarity=0.280 Sum_probs=155.3
Q ss_pred CcEEEEeEEEEe----CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC----CccEEEEcCEeCCCCchh
Q 027067 9 PRLLLKNVSCMR----NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP----SAGEILWNGHDITQSGIF 80 (229)
Q Consensus 9 ~~l~l~~l~~~~----~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p----~~G~I~~~g~~~~~~~~~ 80 (229)
+.+.+.|++..+ |..++++++|++++.||+-|++|+||||||-..|+|+|..+- +.-..++++.++-+..+.
T Consensus 2 ~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr 81 (330)
T COG4170 2 PLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChH
Confidence 467889999877 457899999999999999999999999999999999999763 355667777776665543
Q ss_pred hhh---hhcceEeeccccc--CCCCCH----HHhHH-------HHHHhcCccccHHHHHHHhCCCh---hhcCCCCCCCh
Q 027067 81 HQY---KLQLNWLSLKDAV--KEKFTV----LDNVQ-------WFEVLEGKQGNSLPALELMGLGR---LAKEKARMLSM 141 (229)
Q Consensus 81 ~~~---~~~~~~~~~~~~~--~~~~tv----~e~l~-------~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSg 141 (229)
++. ...+++++|++.- .+.-++ .+|+- ++..+...+.++.++|.++|+.+ ....+|.+|..
T Consensus 82 ~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTe 161 (330)
T COG4170 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTE 161 (330)
T ss_pred HhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhcc
Confidence 221 2456778887653 333222 22221 11122223456788999999964 45789999999
Q ss_pred hHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067 142 GQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 142 GqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~ 206 (229)
||-|+|+||.|++.+|++||.||||+++|+.++..+..++..+.+ +|.||+++|||+..+.+.+|
T Consensus 162 GE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d 227 (330)
T COG4170 162 GECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWAD 227 (330)
T ss_pred CcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhh
Confidence 999999999999999999999999999999999999999988754 47899999999999888764
No 386
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.96 E-value=2.7e-28 Score=248.61 Aligned_cols=192 Identities=21% Similarity=0.274 Sum_probs=136.1
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHH---------HHHCCCCCCcc----E----EEEcC
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLR---------MLAGFSKPSAG----E----ILWNG 71 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~---------~i~Gl~~p~~G----~----I~~~g 71 (229)
+.+++++++. ..|+++||+|++||+++|+|+||||||||++ .+.|...+..+ . |.++-
T Consensus 599 ~~L~l~~~~~-----~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~idQ 673 (1809)
T PRK00635 599 GTLTLSKATK-----HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHITR 673 (1809)
T ss_pred CeEEEecccc-----CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEecC
Confidence 3688888763 3799999999999999999999999999999 66665433111 1 22322
Q ss_pred EeCCCC---------chhhhhh---------hcce-----Eeec--------------------c---------------
Q 027067 72 HDITQS---------GIFHQYK---------LQLN-----WLSL--------------------K--------------- 93 (229)
Q Consensus 72 ~~~~~~---------~~~~~~~---------~~~~-----~~~~--------------------~--------------- 93 (229)
.++... ..+...+ +..+ |.++ +
T Consensus 674 spigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~~ 753 (1809)
T PRK00635 674 DLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFLP 753 (1809)
T ss_pred CCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccCH
Confidence 222110 0000000 0000 1111 0
Q ss_pred ---cccCCCCCHHHhHHHHHHhc----C-c--cccHHHHHHHhCCChh-hcCCCCCCChhHHHHHHHHHHHh---cCCCe
Q 027067 94 ---DAVKEKFTVLDNVQWFEVLE----G-K--QGNSLPALELMGLGRL-AKEKARMLSMGQRKRLQLARLLA---IDRPI 159 (229)
Q Consensus 94 ---~~~~~~~tv~e~l~~~~~~~----~-~--~~~~~~~l~~~~l~~~-~~~~~~~LSgGqkqRv~lAral~---~~p~i 159 (229)
...+...||.|++.+..... . . ..+..++++.+|+.+. .++++.+|||||+||++||+||+ .+|++
T Consensus 754 e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~L 833 (1809)
T PRK00635 754 QVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKIHALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTL 833 (1809)
T ss_pred HHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHHHHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCE
Confidence 01345678888887643211 0 0 0112257888999876 79999999999999999999998 69999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 160 WLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 160 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|||||||+|||+..++.+.+++.+++++|.|||++||+++.+ .++|
T Consensus 834 LILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i-~~aD 879 (1809)
T PRK00635 834 YVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVV-KVAD 879 (1809)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HhCC
Confidence 999999999999999999999999988899999999999988 5654
No 387
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=6.2e-29 Score=221.54 Aligned_cols=180 Identities=28% Similarity=0.400 Sum_probs=145.4
Q ss_pred CCCcEEEEeEEEEe-CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhh
Q 027067 7 PLPRLLLKNVSCMR-NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL 85 (229)
Q Consensus 7 ~~~~l~l~~l~~~~-~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 85 (229)
.+|.|-+.||+|.| +.++++++++|-|.-...+||+||||.||||||++|.|-+.|+.|+.+-+ .+.
T Consensus 583 ~PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn------------hrL 650 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN------------HRL 650 (807)
T ss_pred CCCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc------------cee
Confidence 45789999999999 67889999999999999999999999999999999999999999987542 233
Q ss_pred cceEeeccc--ccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhc-CCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067 86 QLNWLSLKD--AVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAK-EKARMLSMGQRKRLQLARLLAIDRPIWLL 162 (229)
Q Consensus 86 ~~~~~~~~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGqkqRv~lAral~~~p~illl 162 (229)
++||..|+. .+...-|..|++.-. +.-....++..|-.+||....+ -.+..||||||-||++|-.-+..|+||||
T Consensus 651 ~iG~FdQh~~E~L~~Eetp~EyLqr~--FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlIL 728 (807)
T KOG0066|consen 651 RIGWFDQHANEALNGEETPVEYLQRK--FNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLIL 728 (807)
T ss_pred eeechhhhhHHhhccccCHHHHHHHh--cCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEe
Confidence 566655542 343444666655421 1223345677888999965544 46899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067 163 DEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 163 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~ 203 (229)
||||++||.++...+.+.|+++ +..|||||||...+.+
T Consensus 729 DEPTNNLDIESIDALaEAIney---~GgVi~VsHDeRLi~e 766 (807)
T KOG0066|consen 729 DEPTNNLDIESIDALAEAINEY---NGGVIMVSHDERLIVE 766 (807)
T ss_pred cCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccceeee
Confidence 9999999999999999999887 3579999999766644
No 388
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.96 E-value=7.5e-28 Score=236.01 Aligned_cols=103 Identities=29% Similarity=0.457 Sum_probs=88.6
Q ss_pred CCHHHhHHHHHHhcCccccHHHHHHHhCCCh-hhcCCCCCCChhHHHHHHHHHHHhcCC---CeEEEeCCCCCCCHHHHH
Q 027067 100 FTVLDNVQWFEVLEGKQGNSLPALELMGLGR-LAKEKARMLSMGQRKRLQLARLLAIDR---PIWLLDEPSVALDYDGVR 175 (229)
Q Consensus 100 ~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~~p---~illlDEPt~~LD~~~~~ 175 (229)
+|+.|++.|+....+. .+..+.++.+||.. .+++++.+|||||+||+.||++|+.+| +++||||||+|||+..++
T Consensus 792 ltv~E~l~~f~~~~~i-~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~ 870 (943)
T PRK00349 792 MTVEEALEFFEAIPKI-ARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIR 870 (943)
T ss_pred CcHHHHHHHHHhchhh-hHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHH
Confidence 5777777776543321 23457889999976 478999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067 176 LLEYIIAEHRKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 176 ~l~~~l~~~~~~g~tii~vtH~~~~~~~ 203 (229)
.+.+++++++++|.|||++||+++.+..
T Consensus 871 ~L~~~L~~l~~~G~TVIiitH~~~~i~~ 898 (943)
T PRK00349 871 KLLEVLHRLVDKGNTVVVIEHNLDVIKT 898 (943)
T ss_pred HHHHHHHHHHhCCCEEEEEecCHHHHHh
Confidence 9999999998889999999999998853
No 389
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.96 E-value=1.5e-27 Score=215.15 Aligned_cols=203 Identities=20% Similarity=0.312 Sum_probs=173.3
Q ss_pred CCCCCCcEEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeC-CCCchhh
Q 027067 4 RKPPLPRLLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI-TQSGIFH 81 (229)
Q Consensus 4 ~~~~~~~l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~-~~~~~~~ 81 (229)
..|..+.|++++|++.-. +...+++|||+|.+|||+||.|-.|-|-+.|+.+|+|+.+|.+|+|.++|+++ ...++..
T Consensus 251 ~~pg~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~ 330 (501)
T COG3845 251 STPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRE 330 (501)
T ss_pred CCCCCeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHH
Confidence 344567899999998764 36889999999999999999999999999999999999999999999999997 5556656
Q ss_pred hhhhcceEeeccc---ccCCCCCHHHhHHHHHHhc----Cc--------cccHHHHHHHhCCC-hhhcCCCCCCChhHHH
Q 027067 82 QYKLQLNWLSLKD---AVKEKFTVLDNVQWFEVLE----GK--------QGNSLPALELMGLG-RLAKEKARMLSMGQRK 145 (229)
Q Consensus 82 ~~~~~~~~~~~~~---~~~~~~tv~e~l~~~~~~~----~~--------~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkq 145 (229)
.....++|+|.+. .+.+.+|+.||+.+..... .. .....+.++.+++. .-...+..+||||.+|
T Consensus 331 ~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQ 410 (501)
T COG3845 331 RRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQ 410 (501)
T ss_pred HHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCccee
Confidence 6778899999764 5788899999987643221 10 12345677888875 4456678999999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 146 RLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 146 Rv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|+-+||-|..+|++||+-+||.|||..+.+.+.+.+.+.++.|+.|+++|-|++++-..+|
T Consensus 411 K~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsD 471 (501)
T COG3845 411 KLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSD 471 (501)
T ss_pred hhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999999999988875
No 390
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.95 E-value=1.7e-28 Score=202.97 Aligned_cols=166 Identities=19% Similarity=0.177 Sum_probs=111.8
Q ss_pred eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHH
Q 027067 24 QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVL 103 (229)
Q Consensus 24 ~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~ 103 (229)
..++++++++.+| +.+|+||||||||||+.+|.-....+.. ....|..+...-........+.+.+++..++.
T Consensus 10 r~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~----- 82 (198)
T cd03276 10 MCHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA----- 82 (198)
T ss_pred cceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccC-----
Confidence 3457788899887 8899999999999999999754332211 01112211000000001223444555444333
Q ss_pred HhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHH----hcCCCeEEEeCCCCCCCHHHHHHHHH
Q 027067 104 DNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLL----AIDRPIWLLDEPSVALDYDGVRLLEY 179 (229)
Q Consensus 104 e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral----~~~p~illlDEPt~~LD~~~~~~l~~ 179 (229)
|-... .....+.++++. .+..++++.+||+|||||++||+|+ +.+|+++||||||++||+..+..+.+
T Consensus 83 -~~~~~----~~~~~~~~~l~~---~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~ 154 (198)
T cd03276 83 -NPLCV----LSQDMARSFLTS---NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTD 154 (198)
T ss_pred -CcCCH----HHHHHHHHHhcc---ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHH
Confidence 10000 001233445544 5667889999999999999999999 58999999999999999999999999
Q ss_pred HHHHHHhC---CcEEEEEeCChhhHHhh
Q 027067 180 IIAEHRKK---GGIVIVATHLPIQIEDA 204 (229)
Q Consensus 180 ~l~~~~~~---g~tii~vtH~~~~~~~~ 204 (229)
++.+..++ +.|||++||+++++.++
T Consensus 155 ~l~~~~~~~~~~~~iii~th~~~~i~~~ 182 (198)
T cd03276 155 LLVKEAKKQPGRQFIFITPQDISGLASS 182 (198)
T ss_pred HHHHHHhcCCCcEEEEEECCcccccccc
Confidence 99887543 35899999999888764
No 391
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.95 E-value=1e-28 Score=210.68 Aligned_cols=188 Identities=19% Similarity=0.150 Sum_probs=118.8
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEe--CCCCch----hhhhh
Q 027067 11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHD--ITQSGI----FHQYK 84 (229)
Q Consensus 11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~--~~~~~~----~~~~~ 84 (229)
++++|. ++|.+... +.+.++ +++|+||||||||||+.+|+++..++.|+++..+.. +..... .....
T Consensus 4 i~l~nf-~~~~~~~~-----~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~ 76 (247)
T cd03275 4 LELENF-KSYKGRHV-----IGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAY 76 (247)
T ss_pred EEEECc-cccCCCee-----ecCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEE
Confidence 667775 45644332 233344 999999999999999999999998877877654321 110000 00111
Q ss_pred hcceEeeccccc-CCCCCHHHhHH-HHHHh-cCccccHHHHHHHhCCCh--------------hh--------cCCCCCC
Q 027067 85 LQLNWLSLKDAV-KEKFTVLDNVQ-WFEVL-EGKQGNSLPALELMGLGR--------------LA--------KEKARML 139 (229)
Q Consensus 85 ~~~~~~~~~~~~-~~~~tv~e~l~-~~~~~-~~~~~~~~~~l~~~~l~~--------------~~--------~~~~~~L 139 (229)
..+.|..++... ....++.+... +...- .....+..+.++.+|+.. +. ++++.+|
T Consensus 77 v~~~f~~~~~~~~~~~~~~~~~~~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~L 156 (247)
T cd03275 77 VTAVYEDDDGEEKTFRRIITGGSSSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNL 156 (247)
T ss_pred EEEEEEcCCCcEEEEEEEEECCceEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHc
Confidence 122332222110 00001111100 00000 001223456677777731 12 2345899
Q ss_pred ChhHHHHHHHHHHHhcC----CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 140 SMGQRKRLQLARLLAID----RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 140 SgGqkqRv~lAral~~~----p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|+|||||++||+|++.+ |+++||||||++||+..+..+.+++.+++++|.+||++||+.+.+ ..+|
T Consensus 157 S~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~-~~~d 226 (247)
T cd03275 157 SGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFF-SKAD 226 (247)
T ss_pred CHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHH-hhCC
Confidence 99999999999999875 899999999999999999999999999877789999999997665 4444
No 392
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.7e-27 Score=215.26 Aligned_cols=183 Identities=24% Similarity=0.308 Sum_probs=146.1
Q ss_pred CCCcEEEEeEEEEeCCe--eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhh
Q 027067 7 PLPRLLLKNVSCMRNAQ--QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK 84 (229)
Q Consensus 7 ~~~~l~l~~l~~~~~~~--~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~ 84 (229)
.+|.+++.+|++.|... +.+.++++.++.-+.++++|+||+||||++|++.|-..|..|.+.+.+.
T Consensus 359 ~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r------------ 426 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPR------------ 426 (582)
T ss_pred CCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeeccc------------
Confidence 45789999999999643 5999999999999999999999999999999999999999998876542
Q ss_pred hcceEeecccccCCCCCHHHhHHHHHHhc-C-ccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHHhcCCCeEE
Q 027067 85 LQLNWLSLKDAVKEKFTVLDNVQWFEVLE-G-KQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARLLAIDRPIWL 161 (229)
Q Consensus 85 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~-~-~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~ill 161 (229)
.+++|..|...-+..+.|-. +.+....+ + .+++++..+..+|+. ++..+.+..||||||-||++|.+...+|.+|+
T Consensus 427 ~ri~~f~Qhhvd~l~~~v~~-vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLV 505 (582)
T KOG0062|consen 427 LRIKYFAQHHVDFLDKNVNA-VDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLV 505 (582)
T ss_pred ceecchhHhhhhHHHHHhHH-HHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEE
Confidence 23444444322111222211 12222221 2 345677889999996 66777789999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhh
Q 027067 162 LDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAM 205 (229)
Q Consensus 162 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~ 205 (229)
|||||++||..+...+.+.|+.+ +..||+||||.+++...|
T Consensus 506 LDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~fi~~~c 546 (582)
T KOG0062|consen 506 LDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEEFISSLC 546 (582)
T ss_pred ecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHHHHhhcC
Confidence 99999999999999988888877 457999999999999887
No 393
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=1.4e-26 Score=226.73 Aligned_cols=104 Identities=29% Similarity=0.459 Sum_probs=85.7
Q ss_pred CHHHhHHHHHHhcCccccHHHHHHHhCCCh-hhcCCCCCCChhHHHHHHHHHHHhc---CCCeEEEeCCCCCCCHHHHHH
Q 027067 101 TVLDNVQWFEVLEGKQGNSLPALELMGLGR-LAKEKARMLSMGQRKRLQLARLLAI---DRPIWLLDEPSVALDYDGVRL 176 (229)
Q Consensus 101 tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~---~p~illlDEPt~~LD~~~~~~ 176 (229)
||.|.+.|+...... .+..+.++.+||.. .+++++.+|||||+||+.||++|+. +|+++||||||+|||+..++.
T Consensus 791 tv~e~~~f~~~~~~i-~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~ 869 (924)
T TIGR00630 791 TVEEAYEFFEAVPSI-SRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKK 869 (924)
T ss_pred cHHHHHHHHHhccch-hHHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHH
Confidence 455555555432211 23456788899975 4799999999999999999999997 599999999999999999999
Q ss_pred HHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 177 LEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 177 l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
+.+++.+++++|.|||++||+++.+. .+|
T Consensus 870 L~~~L~~l~~~G~TVIvi~H~~~~i~-~aD 898 (924)
T TIGR00630 870 LLEVLQRLVDQGNTVVVIEHNLDVIK-TAD 898 (924)
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHHHH-hCC
Confidence 99999999888999999999999885 444
No 394
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.94 E-value=3.9e-26 Score=208.86 Aligned_cols=182 Identities=24% Similarity=0.287 Sum_probs=146.4
Q ss_pred CcEEEEeEEEEeC--CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067 9 PRLLLKNVSCMRN--AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ 86 (229)
Q Consensus 9 ~~l~l~~l~~~~~--~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 86 (229)
.++++++|+..-+ +..+++|+||+|.+|+-+-|+||||||||+|+|+++|+.+..+|++..-.+.- ...
T Consensus 432 n~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~---------~~~ 502 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG---------PKD 502 (659)
T ss_pred ceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC---------CCc
Confidence 4799999998764 46688999999999999999999999999999999999999999997643211 134
Q ss_pred ceEeecccccCCCCCHHHhHHHHHHh-c-----CccccHHHHHHHhCCChhhcC-----------CCCCCChhHHHHHHH
Q 027067 87 LNWLSLKDAVKEKFTVLDNVQWFEVL-E-----GKQGNSLPALELMGLGRLAKE-----------KARMLSMGQRKRLQL 149 (229)
Q Consensus 87 ~~~~~~~~~~~~~~tv~e~l~~~~~~-~-----~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGqkqRv~l 149 (229)
+-|+||.|.+... |.+|.+.++... . ...++....|+.++|.++..+ -...||+||+||+++
T Consensus 503 lfflPQrPYmt~G-TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ 581 (659)
T KOG0060|consen 503 LFFLPQRPYMTLG-TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAF 581 (659)
T ss_pred eEEecCCCCcccc-chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHH
Confidence 7899999887666 999988775221 1 112345566777777655432 235899999999999
Q ss_pred HHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067 150 ARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 150 Aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~ 203 (229)
||.+..+|++-||||-||++|......+++.+++. |.|.|-|+|..+....
T Consensus 582 ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~---giT~iSVgHRkSL~kf 632 (659)
T KOG0060|consen 582 ARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM---GITFISVGHRKSLWKF 632 (659)
T ss_pred HHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc---CCeEEEeccHHHHHhh
Confidence 99999999999999999999999998988887654 8999999998766543
No 395
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.93 E-value=1.6e-25 Score=200.42 Aligned_cols=166 Identities=26% Similarity=0.334 Sum_probs=121.9
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhh--------hhhh-----------cceEeec
Q 027067 32 SIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFH--------QYKL-----------QLNWLSL 92 (229)
Q Consensus 32 ~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~--------~~~~-----------~~~~~~~ 92 (229)
...+|+++||+|+||-||||-+|+|+|.+.|.=|+. ++.+ ....... .|-. ++.|+--
T Consensus 96 ~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~--~~pp-~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~ 172 (591)
T COG1245 96 TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--EDPP-SWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDL 172 (591)
T ss_pred CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC--CCCC-CHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHH
Confidence 356899999999999999999999999999987754 2211 1110000 0100 0111100
Q ss_pred ccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q 027067 93 KDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYD 172 (229)
Q Consensus 93 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~ 172 (229)
-|..+.. +|.|-+.-. .......++.+.++|...+++.+++|||||.||++||.|++++++++++|||+|-||..
T Consensus 173 iPk~~KG-~v~elLk~~----de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~ 247 (591)
T COG1245 173 IPKVVKG-KVGELLKKV----DERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIR 247 (591)
T ss_pred HHHHhcc-hHHHHHHhh----hhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHH
Confidence 0111111 333322211 01134678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhh
Q 027067 173 GVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAM 205 (229)
Q Consensus 173 ~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~ 205 (229)
.+-...++++++.+.+++||+|.||+..+.-..
T Consensus 248 qRl~~ar~Irel~~~~k~ViVVEHDLavLD~ls 280 (591)
T COG1245 248 QRLNAARVIRELAEDGKYVIVVEHDLAVLDYLS 280 (591)
T ss_pred HHHHHHHHHHHHhccCCeEEEEechHHHHHHhh
Confidence 999999999999888999999999987776554
No 396
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.91 E-value=2e-24 Score=178.62 Aligned_cols=133 Identities=22% Similarity=0.271 Sum_probs=97.8
Q ss_pred eeeeeeEEEeCCc-EEEEEcCCCccHHHHHHHHH--------CCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccc
Q 027067 25 ILRHVNISIHDGG-ALVLTGTNGSGKSTFLRMLA--------GFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDA 95 (229)
Q Consensus 25 iL~~vsl~i~~Ge-~~~iiG~NGsGKSTLl~~i~--------Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 95 (229)
.+.++||++.+|+ +++|+||||||||||||+|+ |..-|....+ .++|..|.
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~------------------~~~~~~~~-- 75 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS------------------SLPVFENI-- 75 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc------------------cCcCccEE--
Confidence 3558999999995 89999999999999999998 4443321111 01111110
Q ss_pred cCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHH
Q 027067 96 VKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVR 175 (229)
Q Consensus 96 ~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~ 175 (229)
+..++..+..+...+++|+||+|++.+++++ .+|+++++||||+++|+..+.
T Consensus 76 ---------------------------~~~lg~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~ 127 (200)
T cd03280 76 ---------------------------FADIGDEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGA 127 (200)
T ss_pred ---------------------------EEecCchhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHH
Confidence 0012222345566789999999999999884 899999999999999999888
Q ss_pred HHH-HHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 176 LLE-YIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 176 ~l~-~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
.+. .+++.+++.+.++|++||+. ++...++
T Consensus 128 ~i~~~~l~~l~~~~~~vi~~tH~~-~l~~~~d 158 (200)
T cd03280 128 ALAIAILEELLERGALVIATTHYG-ELKAYAY 158 (200)
T ss_pred HHHHHHHHHHHhcCCEEEEECCHH-HHHHHHh
Confidence 775 57788877789999999985 4555554
No 397
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.91 E-value=4.2e-24 Score=174.58 Aligned_cols=192 Identities=20% Similarity=0.244 Sum_probs=141.3
Q ss_pred CCcEEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067 8 LPRLLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ 86 (229)
Q Consensus 8 ~~~l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 86 (229)
...+++.++.|+|. ..+++-|+|++++.|....++|.||||||||||+++|-.-...|.|.+.|.+.-...... ....
T Consensus 11 ~~aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~-~Sgd 89 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLE-SSGD 89 (291)
T ss_pred cceEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCcccccccc-ccCc
Confidence 45799999999995 468999999999999999999999999999999999987777799999997643210000 0011
Q ss_pred ceEee----------cccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcC
Q 027067 87 LNWLS----------LKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAID 156 (229)
Q Consensus 87 ~~~~~----------~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 156 (229)
..|+. -+-.+-..+++...|. .-. .....+.+.+...++++ ..-+.+.+|.|||+||.|++.|+..
T Consensus 90 l~YLGgeW~~~~~~agevplq~D~sae~mif-gV~-g~dp~Rre~LI~iLDId--l~WRmHkvSDGqrRRVQicMGLL~P 165 (291)
T KOG2355|consen 90 LSYLGGEWSKTVGIAGEVPLQGDISAEHMIF-GVG-GDDPERREKLIDILDID--LRWRMHKVSDGQRRRVQICMGLLKP 165 (291)
T ss_pred eeEecccccccccccccccccccccHHHHHh-hcc-CCChhHhhhhhhheecc--ceEEEeeccccchhhhHHHHhcccc
Confidence 12211 0111222445544332 111 11223344555665553 3446789999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhh
Q 027067 157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDA 204 (229)
Q Consensus 157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~ 204 (229)
=++|+|||-|-.||..++..+.+++++-.+ +|.||+++||.-+-++..
T Consensus 166 fkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~W 214 (291)
T KOG2355|consen 166 FKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETW 214 (291)
T ss_pred eeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhc
Confidence 999999999999999999999999988655 589999999987766664
No 398
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.90 E-value=1.1e-23 Score=176.15 Aligned_cols=76 Identities=20% Similarity=0.159 Sum_probs=64.0
Q ss_pred hhhcCCCCCCChhHHHHHHHHHHH----hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C-cEEEEEeCChhhHHh
Q 027067 130 RLAKEKARMLSMGQRKRLQLARLL----AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-G-GIVIVATHLPIQIED 203 (229)
Q Consensus 130 ~~~~~~~~~LSgGqkqRv~lAral----~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g-~tii~vtH~~~~~~~ 203 (229)
+..+..+.+||+|||||+.+|+++ +.+|+++|+||||++||+..+..+.+.+..++++ | .|+|++||++..+..
T Consensus 118 ~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~ 197 (213)
T cd03277 118 QLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLN 197 (213)
T ss_pred CccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCc
Confidence 345678899999999999877654 5899999999999999999999999999998765 5 579999999766555
Q ss_pred hh
Q 027067 204 AM 205 (229)
Q Consensus 204 ~~ 205 (229)
.+
T Consensus 198 ~~ 199 (213)
T cd03277 198 YH 199 (213)
T ss_pred cc
Confidence 44
No 399
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.90 E-value=4.3e-24 Score=176.76 Aligned_cols=140 Identities=18% Similarity=0.129 Sum_probs=98.5
Q ss_pred CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCC
Q 027067 22 AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFT 101 (229)
Q Consensus 22 ~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 101 (229)
++.++++++++. |++++|+||||||||||+|+|+|... +.+.|.++... .+++|...++..+|
T Consensus 13 ~~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~----------~~~~q~~~l~~~~~ 75 (199)
T cd03283 13 EKRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS----------SFELPPVKIFTSIR 75 (199)
T ss_pred CCeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC----------ccCcccceEEEecc
Confidence 456788887775 79999999999999999999988553 12345444321 12334456778889
Q ss_pred HHHhHHHHHHhcC-ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHH-HH
Q 027067 102 VLDNVQWFEVLEG-KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLL-EY 179 (229)
Q Consensus 102 v~e~l~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l-~~ 179 (229)
+.||+.+...... ...+..++++.++. .+|+++|+||||+|+|+.....+ ..
T Consensus 76 ~~d~l~~~~s~~~~e~~~~~~iL~~~~~--------------------------~~p~llllDEp~~glD~~~~~~l~~~ 129 (199)
T cd03283 76 VSDDLRDGISYFYAELRRLKEIVEKAKK--------------------------GEPVLFLLDEIFKGTNSRERQAASAA 129 (199)
T ss_pred chhccccccChHHHHHHHHHHHHHhccC--------------------------CCCeEEEEecccCCCCHHHHHHHHHH
Confidence 9998865321110 01223344444431 69999999999999999987655 55
Q ss_pred HHHHHHhCCcEEEEEeCChhhHHhh
Q 027067 180 IIAEHRKKGGIVIVATHLPIQIEDA 204 (229)
Q Consensus 180 ~l~~~~~~g~tii~vtH~~~~~~~~ 204 (229)
+++.+.+.+.++|++||+++.+...
T Consensus 130 ll~~l~~~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 130 VLKFLKNKNTIGIISTHDLELADLL 154 (199)
T ss_pred HHHHHHHCCCEEEEEcCcHHHHHhh
Confidence 7788777789999999999887654
No 400
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.90 E-value=2.8e-23 Score=184.40 Aligned_cols=165 Identities=28% Similarity=0.429 Sum_probs=128.6
Q ss_pred eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCC--------CCCCccEEEEcCEeCCCCchhhhhhhcceEeec--
Q 027067 23 QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGF--------SKPSAGEILWNGHDITQSGIFHQYKLQLNWLSL-- 92 (229)
Q Consensus 23 ~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl--------~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~-- 92 (229)
..+++|+||++++|++++|+|+|||||||+|++|+|. ++|++|.|.+--..++. .+|-
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a------------~iPge~ 463 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSA------------LIPGEY 463 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhh------------ccCccc
Confidence 4589999999999999999999999999999999997 57889988774322221 1111
Q ss_pred ccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCCh--hhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q 027067 93 KDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGR--LAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170 (229)
Q Consensus 93 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD 170 (229)
++.+- ..|+.|.+. ...++...+.++|.+.|+.+ +..+++++||.|||.|+.||++++..|.+++.||-.|+||
T Consensus 464 Ep~f~-~~tilehl~---s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD 539 (593)
T COG2401 464 EPEFG-EVTILEHLR---SKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLD 539 (593)
T ss_pred ccccC-chhHHHHHh---hccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcC
Confidence 22222 345555542 11122334678899999964 3467899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-hCCcEEEEEeCChhhHHh
Q 027067 171 YDGVRLLEYIIAEHR-KKGGIVIVATHLPIQIED 203 (229)
Q Consensus 171 ~~~~~~l~~~l~~~~-~~g~tii~vtH~~~~~~~ 203 (229)
+.+...+..-+.++. +.|.|++++||.++.+..
T Consensus 540 ~~TA~rVArkiselaRe~giTlivvThrpEv~~A 573 (593)
T COG2401 540 ELTAVRVARKISELAREAGITLIVVTHRPEVGNA 573 (593)
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhc
Confidence 999888888888875 559999999999876544
No 401
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.90 E-value=8.3e-24 Score=192.00 Aligned_cols=177 Identities=21% Similarity=0.327 Sum_probs=136.5
Q ss_pred EEEEeEEEEe-CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067 11 LLLKNVSCMR-NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW 89 (229)
Q Consensus 11 l~l~~l~~~~-~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 89 (229)
|.++|+-+-- .+..++..++|.|++|-.+.|+||||||||+|+|+|.|+.+...|...+- ....+.|
T Consensus 482 I~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P------------~~~~mFY 549 (728)
T KOG0064|consen 482 IILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIP------------RPNNIFY 549 (728)
T ss_pred eEEecCceeccCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecC------------CCcceEe
Confidence 7788887654 56778899999999999999999999999999999999999876655431 1224788
Q ss_pred eecccccCCCCCHHHhHHHHHHhc-----C-ccccHHHHHHHhCCChhhcCCC---------CCCChhHHHHHHHHHHHh
Q 027067 90 LSLKDAVKEKFTVLDNVQWFEVLE-----G-KQGNSLPALELMGLGRLAKEKA---------RMLSMGQRKRLQLARLLA 154 (229)
Q Consensus 90 ~~~~~~~~~~~tv~e~l~~~~~~~-----~-~~~~~~~~l~~~~l~~~~~~~~---------~~LSgGqkqRv~lAral~ 154 (229)
+||.|.+- .-|.+|.+.++.... + .+.+....|..+.|+..+.+-. ..||||||||+.+||.+.
T Consensus 550 IPQRPYms-~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~y 628 (728)
T KOG0064|consen 550 IPQRPYMS-GGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFY 628 (728)
T ss_pred ccCCCccC-cCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHh
Confidence 99888765 447777765542211 1 1234556666666665554432 479999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067 155 IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 155 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~ 203 (229)
++|+.-+|||-||+..+.-...+.+..+. .|.+.|-+||.+....-
T Consensus 629 HrPkyalLDEcTsAvsidvE~~i~~~ak~---~gi~llsithrpslwk~ 674 (728)
T KOG0064|consen 629 HRPKYALLDECTSAVSIDVEGKIFQAAKD---AGISLLSITHRPSLWKY 674 (728)
T ss_pred cCcchhhhhhhhcccccchHHHHHHHHHh---cCceEEEeecCccHHHH
Confidence 99999999999999998877777776544 48999999999877654
No 402
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=7.6e-24 Score=189.15 Aligned_cols=193 Identities=20% Similarity=0.333 Sum_probs=140.4
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCC---CCCCccEEEEcCEeCCCCc------hh
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGF---SKPSAGEILWNGHDITQSG------IF 80 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl---~~p~~G~I~~~g~~~~~~~------~~ 80 (229)
-|.++|.+.+-.++.++.|.||.|-.|..||++||||-||||||+-|+.- ++| .=.|.+..+.+.... ..
T Consensus 264 DIKiEnF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPp-nIDvLlCEQEvvad~t~Ai~tvl 342 (807)
T KOG0066|consen 264 DIKIENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPP-NIDVLLCEQEVVADSTSAIDTVL 342 (807)
T ss_pred cceeeeeeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCC-CCceEeeeeeeeecCcHHHHHHH
Confidence 48999999999999999999999999999999999999999999999864 344 334555555442211 00
Q ss_pred hhhhhcceEeeccc----cc-CCCCCHHHhHHH-HHHh-----cCccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHH
Q 027067 81 HQYKLQLNWLSLKD----AV-KEKFTVLDNVQW-FEVL-----EGKQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQ 148 (229)
Q Consensus 81 ~~~~~~~~~~~~~~----~~-~~~~tv~e~l~~-~~~~-----~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~ 148 (229)
..-.++..++-... .+ .-..|+.|.+.- +..+ ...+.+++.+|.-+|+. +..+++...+|||-|.||+
T Consensus 343 ~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvS 422 (807)
T KOG0066|consen 343 KADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVS 422 (807)
T ss_pred HhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehh
Confidence 00000111100000 00 112344443321 1111 11234566778888886 5678888999999999999
Q ss_pred HHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 149 LARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 149 lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|||||..+|-+|+|||||++||..+..++.++++.++ +|+++||||..++.++|+
T Consensus 423 LARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQgFLD~VCt 477 (807)
T KOG0066|consen 423 LARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQGFLDSVCT 477 (807)
T ss_pred HHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEecccchHHHHHH
Confidence 9999999999999999999999999999999998885 599999999999999885
No 403
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=6.4e-23 Score=177.67 Aligned_cols=68 Identities=22% Similarity=0.278 Sum_probs=59.1
Q ss_pred CCCChhHHHHHHHHHHHhc----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 137 RMLSMGQRKRLQLARLLAI----DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 137 ~~LSgGqkqRv~lAral~~----~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
..|||||+||+++|++++. +|+++|+||||++||+..+..+.+.+.++.+ +.|+|++||++... ..+|
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~~~-~~~d 240 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQVA-AMAD 240 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHHHH-HhcC
Confidence 3499999999999997654 9999999999999999999999999998754 78999999999854 4443
No 404
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.89 E-value=1.1e-22 Score=165.65 Aligned_cols=64 Identities=33% Similarity=0.340 Sum_probs=59.3
Q ss_pred CChhHHHHHHHHHHHh----cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHH
Q 027067 139 LSMGQRKRLQLARLLA----IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIE 202 (229)
Q Consensus 139 LSgGqkqRv~lAral~----~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~ 202 (229)
||+||+||++|||+++ .+|+++|+|||+++||+..++.+.+.+.++.+.|.++|++||+++.+.
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~ 162 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFE 162 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh
Confidence 9999999999999996 699999999999999999999999999998777899999999987664
No 405
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.89 E-value=7.5e-23 Score=163.95 Aligned_cols=131 Identities=31% Similarity=0.383 Sum_probs=94.8
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE-eecccccCCCCCHHH
Q 027067 26 LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW-LSLKDAVKEKFTVLD 104 (229)
Q Consensus 26 L~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~tv~e 104 (229)
....++.+.++.+.+|+|||||||||+++++....-..+|.+.... .. +.++ ++.....+
T Consensus 11 ~~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~-----------~~g~~~~~~~~~~------- 71 (162)
T cd03227 11 FVPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV-----------KAGCIVAAVSAEL------- 71 (162)
T ss_pred EeccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc-----------cCCCcceeeEEEE-------
Confidence 3455566666679999999999999999998777655555443311 10 0110 11100000
Q ss_pred hHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhc----CCCeEEEeCCCCCCCHHHHHHHHHH
Q 027067 105 NVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAI----DRPIWLLDEPSVALDYDGVRLLEYI 180 (229)
Q Consensus 105 ~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~----~p~illlDEPt~~LD~~~~~~l~~~ 180 (229)
.+ ...+||+||+||+++|++|+. +|+++|+|||++++|+.....+.+.
T Consensus 72 ---i~-------------------------~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~ 123 (162)
T cd03227 72 ---IF-------------------------TRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEA 123 (162)
T ss_pred ---eh-------------------------heeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 00 001299999999999999987 7899999999999999999988888
Q ss_pred HHHHHhCCcEEEEEeCChhhHHh
Q 027067 181 IAEHRKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 181 l~~~~~~g~tii~vtH~~~~~~~ 203 (229)
+.++..++.++|++||+++....
T Consensus 124 l~~~~~~~~~vii~TH~~~~~~~ 146 (162)
T cd03227 124 ILEHLVKGAQVIVITHLPELAEL 146 (162)
T ss_pred HHHHHhcCCEEEEEcCCHHHHHh
Confidence 88875558899999999988765
No 406
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.88 E-value=1.2e-22 Score=168.71 Aligned_cols=144 Identities=17% Similarity=0.120 Sum_probs=108.0
Q ss_pred CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCC
Q 027067 21 NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKF 100 (229)
Q Consensus 21 ~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (229)
.+..+.+|+++++.+|++++|+||||+||||++|+++++. ...++|... +.....+
T Consensus 14 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~----------------------~la~~G~~v--pa~~~~l 69 (204)
T cd03282 14 KKNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA----------------------IMAQIGCFV--PAEYATL 69 (204)
T ss_pred CCcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH----------------------HHHHcCCCc--chhhcCc
Confidence 3567899999999999999999999999999999998874 111222110 2233444
Q ss_pred CHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHH-HHHHH
Q 027067 101 TVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGV-RLLEY 179 (229)
Q Consensus 101 tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~-~~l~~ 179 (229)
++.|++. ..++..+..++..+++|.|++|+ ..+.+++.+|+++|+|||++|+|+... .....
T Consensus 70 ~~~d~I~----------------~~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~ 132 (204)
T cd03282 70 PIFNRLL----------------SRLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLA 132 (204)
T ss_pred cChhhee----------------EecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHH
Confidence 5556542 22334444567788999999975 555668899999999999999999754 45566
Q ss_pred HHHHHHhCCcEEEEEeCChhhHHhhh
Q 027067 180 IIAEHRKKGGIVIVATHLPIQIEDAM 205 (229)
Q Consensus 180 ~l~~~~~~g~tii~vtH~~~~~~~~~ 205 (229)
+++.+.+.+.++|++||+.+.++.+.
T Consensus 133 il~~l~~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 133 ILECLIKKESTVFFATHFRDIAAILG 158 (204)
T ss_pred HHHHHHhcCCEEEEECChHHHHHHhh
Confidence 77888778999999999998887644
No 407
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.87 E-value=8.9e-22 Score=165.54 Aligned_cols=139 Identities=20% Similarity=0.234 Sum_probs=99.7
Q ss_pred CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce-EeecccccCCC
Q 027067 21 NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN-WLSLKDAVKEK 99 (229)
Q Consensus 21 ~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 99 (229)
+.+.+.+|++++..+|++++|+||||+|||||+++++=. .+..++| |+|......+
T Consensus 15 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~----------------------~~la~~g~~vpa~~~~~~- 71 (222)
T cd03285 15 DVAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI----------------------VLMAQIGCFVPCDSADIP- 71 (222)
T ss_pred CCCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH----------------------HHHHHhCCCcCcccEEEe-
Confidence 456789999999999999999999999999999999810 1223344 4443321111
Q ss_pred CCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHH--hcCCCeEEEeCC---CCCCCHHHH
Q 027067 100 FTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLL--AIDRPIWLLDEP---SVALDYDGV 174 (229)
Q Consensus 100 ~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral--~~~p~illlDEP---t~~LD~~~~ 174 (229)
. ..+++..+++.+. ....+|.|++|++.+++++ +.+|+++||||| |+++|+.+.
T Consensus 72 --~----------------~~~il~~~~l~d~---~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~ 130 (222)
T cd03285 72 --I----------------VDCILARVGASDS---QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGL 130 (222)
T ss_pred --c----------------cceeEeeeccccc---hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHH
Confidence 1 1123344555433 2578999999999999999 899999999999 899999876
Q ss_pred HHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067 175 RLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 175 ~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~ 206 (229)
... +++.+.+ .|.++|++||+ .++.+.++
T Consensus 131 ~~~--il~~l~~~~~~~vlisTH~-~el~~~~~ 160 (222)
T cd03285 131 AWA--IAEYIATQIKCFCLFATHF-HELTALAD 160 (222)
T ss_pred HHH--HHHHHHhcCCCeEEEEech-HHHHHHhh
Confidence 432 2233333 47899999996 66666665
No 408
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.84 E-value=1.5e-20 Score=155.58 Aligned_cols=137 Identities=18% Similarity=0.160 Sum_probs=90.5
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCC-CCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHh
Q 027067 27 RHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS-KPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDN 105 (229)
Q Consensus 27 ~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~-~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~ 105 (229)
-..|+++.+|++++|+||||||||||||+|++.. .+..|..... ....+++.. .++..+..
T Consensus 20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~------------~~~~i~~~d---qi~~~~~~--- 81 (202)
T cd03243 20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPA------------ESASIPLVD---RIFTRIGA--- 81 (202)
T ss_pred EeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccc------------cccccCCcC---EEEEEecC---
Confidence 4556677789999999999999999999999543 2233321110 011122111 11111111
Q ss_pred HHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHH-HHHHHHH
Q 027067 106 VQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLL-EYIIAEH 184 (229)
Q Consensus 106 l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l-~~~l~~~ 184 (229)
.+......+.+|.+++| +..+.+++.+|+++|+||||+|+|+.....+ ..+++.+
T Consensus 82 -----------------------~d~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l 137 (202)
T cd03243 82 -----------------------EDSISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHL 137 (202)
T ss_pred -----------------------cccccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 11123334566766665 6666788899999999999999999877655 4567777
Q ss_pred HhCCcEEEEEeCChhhHHhhh
Q 027067 185 RKKGGIVIVATHLPIQIEDAM 205 (229)
Q Consensus 185 ~~~g~tii~vtH~~~~~~~~~ 205 (229)
++.+.++|++||+.+.+..+.
T Consensus 138 ~~~~~~vi~~tH~~~~~~~~~ 158 (202)
T cd03243 138 LEKGCRTLFATHFHELADLPE 158 (202)
T ss_pred HhcCCeEEEECChHHHHHHhh
Confidence 777899999999987766543
No 409
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.83 E-value=7.2e-20 Score=187.45 Aligned_cols=86 Identities=28% Similarity=0.354 Sum_probs=78.0
Q ss_pred HHHHHHHhCCChh-hcCCCCCCChhHHHHHHHHHHHhcC---CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEE
Q 027067 119 SLPALELMGLGRL-AKEKARMLSMGQRKRLQLARLLAID---RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVA 194 (229)
Q Consensus 119 ~~~~l~~~~l~~~-~~~~~~~LSgGqkqRv~lAral~~~---p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~v 194 (229)
..+.|..+||.-+ +.++..+|||||.||+-||.-|..+ +.+++|||||.||++...+.+..+++.+.+.|.|||+|
T Consensus 1679 ~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivi 1758 (1809)
T PRK00635 1679 PLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYI 1758 (1809)
T ss_pred HHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 3456888899744 6899999999999999999999875 78999999999999999999999999999999999999
Q ss_pred eCChhhHHhh
Q 027067 195 THLPIQIEDA 204 (229)
Q Consensus 195 tH~~~~~~~~ 204 (229)
.||++.+..+
T Consensus 1759 eH~~~~i~~a 1768 (1809)
T PRK00635 1759 DHDPALLKQA 1768 (1809)
T ss_pred eCCHHHHHhC
Confidence 9999988874
No 410
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.83 E-value=1.2e-20 Score=185.94 Aligned_cols=172 Identities=28% Similarity=0.383 Sum_probs=144.0
Q ss_pred eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC---CccEEEEcCEeCCCCchhhhhhhcceEeecccccCCC
Q 027067 23 QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP---SAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEK 99 (229)
Q Consensus 23 ~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p---~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (229)
..+|+|+|.-+++|+.+.++||.||||||||++++|-..- ..|+|.++|.+...... +..++|.+|++.-++.
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~----~~~~aY~~e~DvH~p~ 203 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP----KKTVAYNSEQDVHFPE 203 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc----CceEEeccccccccce
Confidence 4699999999999999999999999999999999998753 35799999998765321 5678999999999999
Q ss_pred CCHHHhHHHHHHhcCc-----c---c-----cHHHHHHHhCCChhhc-----CCCCCCChhHHHHHHHHHHHhcCCCeEE
Q 027067 100 FTVLDNVQWFEVLEGK-----Q---G-----NSLPALELMGLGRLAK-----EKARMLSMGQRKRLQLARLLAIDRPIWL 161 (229)
Q Consensus 100 ~tv~e~l~~~~~~~~~-----~---~-----~~~~~l~~~~l~~~~~-----~~~~~LSgGqkqRv~lAral~~~p~ill 161 (229)
+||+|-+.|....... + . ..+.+++.+||..-.+ ......|||||+||++|-+++.+++++.
T Consensus 204 lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~ 283 (1391)
T KOG0065|consen 204 LTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILF 283 (1391)
T ss_pred eEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceee
Confidence 9999999987654321 0 1 1235788999976664 4457899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCh
Q 027067 162 LDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLP 198 (229)
Q Consensus 162 lDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~ 198 (229)
+||+|.|||..+.-.+.+.++.+.. .+.|++++-|.+
T Consensus 284 ~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~ 321 (1391)
T KOG0065|consen 284 WDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQP 321 (1391)
T ss_pred eecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccC
Confidence 9999999999999888888888754 478888888864
No 411
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=1.5e-19 Score=156.22 Aligned_cols=67 Identities=28% Similarity=0.234 Sum_probs=54.8
Q ss_pred CCCCCChhHHHHHHHHHHHh---------cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhh
Q 027067 135 KARMLSMGQRKRLQLARLLA---------IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAM 205 (229)
Q Consensus 135 ~~~~LSgGqkqRv~lAral~---------~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~ 205 (229)
....+|+||+|++++|++|+ .+|+++|+||||++||+..++.+.+.+..+ + .+++++|+...+.+.+
T Consensus 180 ~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~---~-q~ii~~~~~~~~~~~~ 255 (270)
T cd03242 180 AADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR---V-QTFVTTTDLADFDALW 255 (270)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC---C-CEEEEeCCchhccchh
Confidence 35568999999999999985 799999999999999999999988888764 2 4666777666665544
No 412
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.81 E-value=3.6e-19 Score=168.62 Aligned_cols=86 Identities=33% Similarity=0.464 Sum_probs=77.6
Q ss_pred HHHHHHHhCCCh-hhcCCCCCCChhHHHHHHHHHHHhcCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEE
Q 027067 119 SLPALELMGLGR-LAKEKARMLSMGQRKRLQLARLLAIDR---PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVA 194 (229)
Q Consensus 119 ~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~~p---~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~v 194 (229)
..+.|..+||.- .+.++..+|||||.|||-||.-|.... -++||||||+||-..-.+.+.+.|..+..+|.|||++
T Consensus 802 kLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVI 881 (935)
T COG0178 802 KLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVI 881 (935)
T ss_pred HHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 446677889864 368999999999999999999999887 9999999999999999999999999999999999999
Q ss_pred eCChhhHHhh
Q 027067 195 THLPIQIEDA 204 (229)
Q Consensus 195 tH~~~~~~~~ 204 (229)
.|+++.+..+
T Consensus 882 EHNLdVIk~A 891 (935)
T COG0178 882 EHNLDVIKTA 891 (935)
T ss_pred ecccceEeec
Confidence 9999877664
No 413
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.77 E-value=1.3e-18 Score=171.02 Aligned_cols=85 Identities=31% Similarity=0.359 Sum_probs=77.5
Q ss_pred HHHHHhCCChh-hcCCCCCCChhHHHHHHHHHHHhcCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q 027067 121 PALELMGLGRL-AKEKARMLSMGQRKRLQLARLLAIDR--PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHL 197 (229)
Q Consensus 121 ~~l~~~~l~~~-~~~~~~~LSgGqkqRv~lAral~~~p--~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~ 197 (229)
+.+..+||..+ +++++.+|||||+|||.||++|+.+| ++|||||||+|||+...+.+.+++++++++|.|||+|+|+
T Consensus 469 ~~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd 548 (924)
T TIGR00630 469 GFLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHD 548 (924)
T ss_pred HhHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 35677888765 69999999999999999999999986 8999999999999999999999999998889999999999
Q ss_pred hhhHHhhhc
Q 027067 198 PIQIEDAMN 206 (229)
Q Consensus 198 ~~~~~~~~~ 206 (229)
++.+. .+|
T Consensus 549 ~~~i~-~aD 556 (924)
T TIGR00630 549 EETIR-AAD 556 (924)
T ss_pred HHHHh-hCC
Confidence 99886 554
No 414
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.77 E-value=6.2e-18 Score=141.36 Aligned_cols=136 Identities=24% Similarity=0.270 Sum_probs=90.5
Q ss_pred eeeeeeeEEEeCC--cEEEEEcCCCccHHHHHHHHHC--CCCCCccEEEEcCEeCCCCchhhhhhhcceEeeccc-ccCC
Q 027067 24 QILRHVNISIHDG--GALVLTGTNGSGKSTFLRMLAG--FSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKD-AVKE 98 (229)
Q Consensus 24 ~iL~~vsl~i~~G--e~~~iiG~NGsGKSTLl~~i~G--l~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 98 (229)
.+=+|+++ .++ .+++|+||||+|||||||.++. ++ +..|.+.+.. . ..+++..+.. .+..
T Consensus 17 ~vpnd~~l--~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-~-----------~~~~~~d~i~~~l~~ 81 (213)
T cd03281 17 FVPNDTEI--GGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-S-----------ATIGLVDKIFTRMSS 81 (213)
T ss_pred eEcceEEe--cCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-C-----------cEEeeeeeeeeeeCC
Confidence 34445554 444 7999999999999999999983 33 5566654421 0 1223332211 1111
Q ss_pred CCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHH-HHHH
Q 027067 99 KFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDG-VRLL 177 (229)
Q Consensus 99 ~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~-~~~l 177 (229)
..++.+++. ++ .-+.||+++|++++.+|.++|+|||++|+|+.. ...+
T Consensus 82 ~~si~~~~S------------------------------~f-~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~ 130 (213)
T cd03281 82 RESVSSGQS------------------------------AF-MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLL 130 (213)
T ss_pred ccChhhccc------------------------------hH-HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHH
Confidence 112222111 11 235699999999999999999999999999975 5566
Q ss_pred HHHHHHHHhC---CcEEEEEeCChhhHHhhh
Q 027067 178 EYIIAEHRKK---GGIVIVATHLPIQIEDAM 205 (229)
Q Consensus 178 ~~~l~~~~~~---g~tii~vtH~~~~~~~~~ 205 (229)
..+++.+.+. +.++|++||+.+.++.+.
T Consensus 131 ~ail~~l~~~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 131 IATIEHLLKRGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred HHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence 6788887654 248999999999888765
No 415
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.77 E-value=1.6e-18 Score=170.54 Aligned_cols=83 Identities=29% Similarity=0.341 Sum_probs=77.1
Q ss_pred HHHHHhCCChh-hcCCCCCCChhHHHHHHHHHHHhcCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q 027067 121 PALELMGLGRL-AKEKARMLSMGQRKRLQLARLLAIDR--PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHL 197 (229)
Q Consensus 121 ~~l~~~~l~~~-~~~~~~~LSgGqkqRv~lAral~~~p--~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~ 197 (229)
+.++.+||..+ +++++.+|||||+|||.||+||+.+| ++|||||||+|||+..++.+.++|++++++|.|||+|+|+
T Consensus 471 ~~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~ 550 (943)
T PRK00349 471 KFLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHD 550 (943)
T ss_pred HHhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 36778899866 79999999999999999999999997 9999999999999999999999999998889999999999
Q ss_pred hhhHHh
Q 027067 198 PIQIED 203 (229)
Q Consensus 198 ~~~~~~ 203 (229)
++++..
T Consensus 551 ~~~i~~ 556 (943)
T PRK00349 551 EDTIRA 556 (943)
T ss_pred HHHHHh
Confidence 998863
No 416
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.76 E-value=3.1e-18 Score=152.81 Aligned_cols=166 Identities=25% Similarity=0.295 Sum_probs=123.2
Q ss_pred EeC-CeeeeeeeeEEEeCCc-----EEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeec
Q 027067 19 MRN-AQQILRHVNISIHDGG-----ALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSL 92 (229)
Q Consensus 19 ~~~-~~~iL~~vsl~i~~Ge-----~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~ 92 (229)
+|. .+.-+.+..|.|..|+ ++..+|+||.|||||+++++|.++|++|. ++.. ..++|-||
T Consensus 344 ~Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p~--------lnVSykpq 409 (592)
T KOG0063|consen 344 SYPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIPV--------LNVSYKPQ 409 (592)
T ss_pred ccCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------cccc--------cceecccc
Confidence 353 3567888999998885 78999999999999999999999998751 1111 13444454
Q ss_pred ccccCCCCCHHHhHHHHH-HhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q 027067 93 KDAVKEKFTVLDNVQWFE-VLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDY 171 (229)
Q Consensus 93 ~~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~ 171 (229)
.-.--..-||++-+.--- ..+-...-+.+.++.+.+++..++.+.+|||||+|||++|.+|=..+++++.|||.+-||.
T Consensus 410 kispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDS 489 (592)
T KOG0063|consen 410 KISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDS 489 (592)
T ss_pred ccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcCh
Confidence 433334446766543110 0111223355678888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-HhCCcEEEEEeCCh
Q 027067 172 DGVRLLEYIIAEH-RKKGGIVIVATHLP 198 (229)
Q Consensus 172 ~~~~~l~~~l~~~-~~~g~tii~vtH~~ 198 (229)
+.+..-...++.+ -..++|-.+|.||.
T Consensus 490 eQRi~AskvikRfilhakktafvVEhdf 517 (592)
T KOG0063|consen 490 EQRIIASKVIKRFILHAKKTAFVVEHDF 517 (592)
T ss_pred HHHHHHHHHHHHHHHhccchhhhhhhHH
Confidence 9887666666664 34467888999984
No 417
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.76 E-value=3.9e-19 Score=145.41 Aligned_cols=126 Identities=18% Similarity=0.234 Sum_probs=82.2
Q ss_pred EEEEEcCCCccHHHHHHHHH-CCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHHhcCcc
Q 027067 38 ALVLTGTNGSGKSTFLRMLA-GFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQ 116 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~-Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~ 116 (229)
+++|+||||+|||||+|.++ ..+-+..|...... ...++++ +.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~------------~~~~~~~-------------d~----------- 44 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAE------------SAELPVF-------------DR----------- 44 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeeh------------heEeccc-------------ce-----------
Confidence 36899999999999999997 33333333321100 0011110 00
Q ss_pred ccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHH-HHHHHHHHHhC-CcEEEEE
Q 027067 117 GNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRL-LEYIIAEHRKK-GGIVIVA 194 (229)
Q Consensus 117 ~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~-l~~~l~~~~~~-g~tii~v 194 (229)
++..++..+..++..+++|+|++|...+++. +.+|+++|+|||++|+|+..... +..+++.+.++ +.++|++
T Consensus 45 -----il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~-~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~ 118 (185)
T smart00534 45 -----IFTRIGASDSLAQGLSTFMVEMKETANILKN-ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFA 118 (185)
T ss_pred -----EEEEeCCCCchhccccHHHHHHHHHHHHHHh-CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 1122334445567788999988874444432 45999999999999999986654 45677777664 8899999
Q ss_pred eCChhhHHhhhc
Q 027067 195 THLPIQIEDAMN 206 (229)
Q Consensus 195 tH~~~~~~~~~~ 206 (229)
||+.+ +...++
T Consensus 119 TH~~~-l~~~~~ 129 (185)
T smart00534 119 THYHE-LTKLAD 129 (185)
T ss_pred ecHHH-HHHHhh
Confidence 99985 555554
No 418
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.76 E-value=3.2e-18 Score=166.13 Aligned_cols=152 Identities=16% Similarity=0.163 Sum_probs=102.7
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCC-cEEEEEcCCCccHHHHHHHHHCC-CCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDG-GALVLTGTNGSGKSTFLRMLAGF-SKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~G-e~~~iiG~NGsGKSTLl~~i~Gl-~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
.+.++++..-+-...-.-.+|+++..+ ++++|+||||+|||||||+|+|. +.+..|-
T Consensus 295 ~i~l~~~rhPll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~--------------------- 353 (771)
T TIGR01069 295 KIILENARHPLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI--------------------- 353 (771)
T ss_pred CEEEccccCceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCC---------------------
Confidence 466666654221111122478899887 89999999999999999999997 4444441
Q ss_pred eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCC
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSV 167 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~ 167 (229)
++|..... .+.+++.+. . .++-.+......+++|+||++++.+++++ .+|.++|+|||++
T Consensus 354 -~Vpa~~~~--~~~~~d~i~--~--------------~i~~~~si~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~ 413 (771)
T TIGR01069 354 -PIPANEHS--EIPYFEEIF--A--------------DIGDEQSIEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGA 413 (771)
T ss_pred -CccCCccc--cccchhhee--e--------------ecChHhHHhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCC
Confidence 11111100 001111110 0 00111223345788999999999998876 7899999999999
Q ss_pred CCCHHHHHHH-HHHHHHHHhCCcEEEEEeCChhhHH
Q 027067 168 ALDYDGVRLL-EYIIAEHRKKGGIVIVATHLPIQIE 202 (229)
Q Consensus 168 ~LD~~~~~~l-~~~l~~~~~~g~tii~vtH~~~~~~ 202 (229)
|+|+.....+ ..++..+.+.|.++|++||+.+...
T Consensus 414 GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 414 GTDPDEGSALAISILEYLLKQNAQVLITTHYKELKA 449 (771)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHH
Confidence 9999988777 5778888778999999999987644
No 419
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.76 E-value=4.3e-18 Score=142.60 Aligned_cols=137 Identities=22% Similarity=0.232 Sum_probs=87.8
Q ss_pred CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCC
Q 027067 22 AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFT 101 (229)
Q Consensus 22 ~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 101 (229)
...+.++++++..+ ++++|+||||||||||||+++++.-. |+ .|..+.. ....++++. .++..++
T Consensus 17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l--~~---~g~~vp~------~~~~i~~~~---~i~~~~~ 81 (216)
T cd03284 17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL--AQ---IGSFVPA------SKAEIGVVD---RIFTRIG 81 (216)
T ss_pred CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH--hc---cCCeecc------ccceeccee---eEeccCC
Confidence 45689999999987 99999999999999999999875421 11 1211111 112334432 3456666
Q ss_pred HHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHH--hcCCCeEEEeCC---CCCCCHHHHHH
Q 027067 102 VLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLL--AIDRPIWLLDEP---SVALDYDGVRL 176 (229)
Q Consensus 102 v~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral--~~~p~illlDEP---t~~LD~~~~~~ 176 (229)
+.|++... .|.-...+..+++++ +.+|+++||||| |+++|....
T Consensus 82 ~~~~ls~g-----------------------------~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~-- 130 (216)
T cd03284 82 ASDDLAGG-----------------------------RSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI-- 130 (216)
T ss_pred chhhhccC-----------------------------cchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH--
Confidence 66655321 133333444455554 569999999999 888887542
Q ss_pred HHHHHHHHHhC-CcEEEEEeCChhhHHhhh
Q 027067 177 LEYIIAEHRKK-GGIVIVATHLPIQIEDAM 205 (229)
Q Consensus 177 l~~~l~~~~~~-g~tii~vtH~~~~~~~~~ 205 (229)
...+++.+.+. +.++|++||+.+ +.+..
T Consensus 131 ~~~il~~l~~~~~~~vi~~TH~~~-l~~l~ 159 (216)
T cd03284 131 AWAIVEYLHEKIGAKTLFATHYHE-LTELE 159 (216)
T ss_pred HHHHHHHHHhccCCcEEEEeCcHH-HHHHh
Confidence 33445555555 789999999964 33433
No 420
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.75 E-value=1.8e-17 Score=143.04 Aligned_cols=120 Identities=18% Similarity=0.151 Sum_probs=83.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHHhcCcc
Q 027067 37 GALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQ 116 (229)
Q Consensus 37 e~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~ 116 (229)
.-++|+||||||||||+++|+|+++|++|+|.++|+++............+.+++|.. +....+|.+|....
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~k~------- 183 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCPKA------- 183 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccchHH-------
Confidence 5789999999999999999999999999999999999864321122333455566543 44455555542110
Q ss_pred ccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeC
Q 027067 117 GNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATH 196 (229)
Q Consensus 117 ~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH 196 (229)
.| ..+.+.+++|+++|+|||++ .+.+..+++.+. .|.++|++||
T Consensus 184 ------------------------~~-----~~~~i~~~~P~villDE~~~------~e~~~~l~~~~~-~G~~vI~ttH 227 (270)
T TIGR02858 184 ------------------------EG-----MMMLIRSMSPDVIVVDEIGR------EEDVEALLEALH-AGVSIIATAH 227 (270)
T ss_pred ------------------------HH-----HHHHHHhCCCCEEEEeCCCc------HHHHHHHHHHHh-CCCEEEEEec
Confidence 01 13333446999999999974 344555655554 6899999999
Q ss_pred Chhh
Q 027067 197 LPIQ 200 (229)
Q Consensus 197 ~~~~ 200 (229)
+.+.
T Consensus 228 ~~~~ 231 (270)
T TIGR02858 228 GRDV 231 (270)
T ss_pred hhHH
Confidence 8533
No 421
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.68 E-value=2.7e-16 Score=132.20 Aligned_cols=138 Identities=19% Similarity=0.175 Sum_probs=90.9
Q ss_pred CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHC-CCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCC
Q 027067 22 AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAG-FSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKF 100 (229)
Q Consensus 22 ~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~G-l~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (229)
...+.+++++.+.+|++++|+||||+||||+++++++ .+.++.|...+.. .. .+++. +.++..+
T Consensus 17 ~~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~~-----------~~~~~---~~i~~~~ 81 (222)
T cd03287 17 KSFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-SA-----------TLSIF---DSVLTRM 81 (222)
T ss_pred CCEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-ce-----------EEecc---ceEEEEe
Confidence 3578999999999999999999999999999999999 6778888876532 11 11111 1111111
Q ss_pred CHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChh--HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHH-H
Q 027067 101 TVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMG--QRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRL-L 177 (229)
Q Consensus 101 tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG--qkqRv~lAral~~~p~illlDEPt~~LD~~~~~~-l 177 (229)
...|++. ..+|.= |-+++.-+.--+.++.++|+|||++|.|+..... .
T Consensus 82 ~~~d~~~-----------------------------~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~ 132 (222)
T cd03287 82 GASDSIQ-----------------------------HGMSTFMVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIA 132 (222)
T ss_pred cCccccc-----------------------------cccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHH
Confidence 1111110 111211 2223333333456899999999999999765443 4
Q ss_pred HHHHHHHHhC-CcEEEEEeCChhhHHh
Q 027067 178 EYIIAEHRKK-GGIVIVATHLPIQIED 203 (229)
Q Consensus 178 ~~~l~~~~~~-g~tii~vtH~~~~~~~ 203 (229)
..+++.+.+. +.++|++||+.+..+-
T Consensus 133 ~~il~~l~~~~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 133 YATLHYLLEEKKCLVLFVTHYPSLGEI 159 (222)
T ss_pred HHHHHHHHhccCCeEEEEcccHHHHHH
Confidence 6677777665 7899999999877643
No 422
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.68 E-value=7.6e-17 Score=134.68 Aligned_cols=66 Identities=38% Similarity=0.475 Sum_probs=51.9
Q ss_pred CCChhHHHHHHHHHHHh----cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067 138 MLSMGQRKRLQLARLLA----IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA 204 (229)
Q Consensus 138 ~LSgGqkqRv~lAral~----~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~ 204 (229)
.||||||.+++||-.|+ .+.+++|||||.++||...+..+.++|.++.+ +.-+|++||+...++.+
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~-~~Q~ii~Th~~~~~~~a 205 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK-QSQFIITTHNPEMFEDA 205 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-TSEEEEE-S-HHHHTT-
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccc
Confidence 99999999999997764 47799999999999999999999999998754 47899999998776654
No 423
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.68 E-value=1.5e-16 Score=142.17 Aligned_cols=169 Identities=27% Similarity=0.326 Sum_probs=115.5
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCC-CchhhhhhhcceEee-cccccCCCCCHHHhHH-HHH
Q 027067 34 HDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQ-SGIFHQYKLQLNWLS-LKDAVKEKFTVLDNVQ-WFE 110 (229)
Q Consensus 34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~tv~e~l~-~~~ 110 (229)
.+|++.+++|.||.||||-+++++|-++|.-|... ++-+.+. ..+++....+-.|.. ....+-.... .+++. ++.
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~-~pp~w~~il~~frgselq~yftk~le~~lk~~~k-pQyvd~ipr 175 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYD-NPPDWQEILTYFRGSELQNYFTKILEDNLKAIIK-PQYVDQIPR 175 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCC-CCcchHHHhhhhhhHHHhhhhhhhccccccCcCC-hHHHHHHHH
Confidence 57999999999999999999999999999877541 1111110 011110000000000 0000000000 01111 111
Q ss_pred H--------hcC--ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q 027067 111 V--------LEG--KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYI 180 (229)
Q Consensus 111 ~--------~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~ 180 (229)
. +.. ......++++.+.|....++.+.+|||||-||.+||.+.+++.++.++|||.+.||...+..-...
T Consensus 176 ~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~ 255 (592)
T KOG0063|consen 176 AVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAIT 255 (592)
T ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHH
Confidence 0 000 112345678888898899999999999999999999999999999999999999999999888888
Q ss_pred HHHHHhCCcEEEEEeCChhhHHhh
Q 027067 181 IAEHRKKGGIVIVATHLPIQIEDA 204 (229)
Q Consensus 181 l~~~~~~g~tii~vtH~~~~~~~~ 204 (229)
++.+...+.-||+|.||++.+.-.
T Consensus 256 IRsl~~p~~YiIVVEHDLsVLDyl 279 (592)
T KOG0063|consen 256 IRSLINPDRYIIVVEHDLSVLDYL 279 (592)
T ss_pred HHHhhCCCCeEEEEEeechHHHhh
Confidence 999888788999999999877653
No 424
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.66 E-value=1.1e-16 Score=133.23 Aligned_cols=50 Identities=22% Similarity=0.187 Sum_probs=44.6
Q ss_pred CCCChh--HHHHHHHHHHHhcCCCeEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q 027067 137 RMLSMG--QRKRLQLARLLAIDRPIWLLDEPS-----VALDYDGVRLLEYIIAEHRK 186 (229)
Q Consensus 137 ~~LSgG--qkqRv~lAral~~~p~illlDEPt-----~~LD~~~~~~l~~~l~~~~~ 186 (229)
+..||+ |++++.||++++.+|+++++|||| ++||+..++.+.+++++++.
T Consensus 149 Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 149 SAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred eCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 444444 999999999999999999999999 99999999999999998753
No 425
>PRK00064 recF recombination protein F; Reviewed
Probab=99.66 E-value=2.9e-15 Score=134.48 Aligned_cols=67 Identities=33% Similarity=0.297 Sum_probs=57.5
Q ss_pred CCCCChhHHHHHHHHHHHh---------cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhh
Q 027067 136 ARMLSMGQRKRLQLARLLA---------IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAM 205 (229)
Q Consensus 136 ~~~LSgGqkqRv~lAral~---------~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~ 205 (229)
...+|.||+|++++|++|+ .+|+|+|+|||+++||+..++.+.+.+..+ +..++++||+.+.+...+
T Consensus 271 ~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~~~~~~~ 346 (361)
T PRK00064 271 ADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLEDLADLL 346 (361)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChhhhhhhh
Confidence 4689999999999999996 799999999999999999999988887653 458999999987766543
No 426
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.64 E-value=7.5e-16 Score=150.02 Aligned_cols=138 Identities=20% Similarity=0.191 Sum_probs=95.2
Q ss_pred eeeEEEeC-CcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce-EeecccccCCCCCHHHh
Q 027067 28 HVNISIHD-GGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN-WLSLKDAVKEKFTVLDN 105 (229)
Q Consensus 28 ~vsl~i~~-Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~tv~e~ 105 (229)
..|+.+.. +.++.|+|||++||||+||.++... +..+.| ++|-... ..+.++++
T Consensus 318 pndi~l~~~~~~~iITGpN~gGKTt~lktigl~~----------------------~maq~G~~vpa~~~--~~i~~~~~ 373 (782)
T PRK00409 318 PKDISLGFDKTVLVITGPNTGGKTVTLKTLGLAA----------------------LMAKSGLPIPANEP--SEIPVFKE 373 (782)
T ss_pred CceeEECCCceEEEEECCCCCCcHHHHHHHHHHH----------------------HHHHhCCCcccCCC--ccccccce
Confidence 34555543 5689999999999999999995331 011112 2222110 01122222
Q ss_pred HHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHH-HHHHHHH
Q 027067 106 VQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLL-EYIIAEH 184 (229)
Q Consensus 106 l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l-~~~l~~~ 184 (229)
+. ..+|-.+...+.++++|+||+|++.|++++ .+|.++|+|||++|+|+.....+ ..++..+
T Consensus 374 i~----------------~~ig~~~si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l 436 (782)
T PRK00409 374 IF----------------ADIGDEQSIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYL 436 (782)
T ss_pred EE----------------EecCCccchhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 21 012223344567889999999999999998 89999999999999999977666 4577777
Q ss_pred HhCCcEEEEEeCChhhHHhhhc
Q 027067 185 RKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 185 ~~~g~tii~vtH~~~~~~~~~~ 206 (229)
.+.|.++|++||+.+....+.+
T Consensus 437 ~~~~~~vIitTH~~el~~~~~~ 458 (782)
T PRK00409 437 RKRGAKIIATTHYKELKALMYN 458 (782)
T ss_pred HHCCCEEEEECChHHHHHHHhc
Confidence 7778999999999887776654
No 427
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.60 E-value=1.3e-15 Score=113.57 Aligned_cols=77 Identities=14% Similarity=0.074 Sum_probs=60.6
Q ss_pred CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCC
Q 027067 22 AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFT 101 (229)
Q Consensus 22 ~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 101 (229)
++.+|++++|++++|++++|+||||||||||++++. +|++.++|.++..... ....+..++.+|+ + ...|
T Consensus 1 ~~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~-~~~~~~~~~~~q~--l-f~~t 70 (107)
T cd00820 1 GTTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIRE-DSKDELIGRNPEL--G-LEIR 70 (107)
T ss_pred CceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhh-hhcCCEEEEechh--c-chhh
Confidence 357899999999999999999999999999999986 7999999999865432 1223334555554 3 3458
Q ss_pred HHHhHHH
Q 027067 102 VLDNVQW 108 (229)
Q Consensus 102 v~e~l~~ 108 (229)
++|||.+
T Consensus 71 i~~Ni~~ 77 (107)
T cd00820 71 LRLNIFL 77 (107)
T ss_pred HHhhcee
Confidence 9999976
No 428
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.58 E-value=2.3e-14 Score=120.21 Aligned_cols=144 Identities=19% Similarity=0.173 Sum_probs=90.4
Q ss_pred CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC-CccEEEEcCEeCCCCchhhhhhhcceEeecccccCCC
Q 027067 21 NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP-SAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEK 99 (229)
Q Consensus 21 ~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (229)
++..+-+|++|+.++|++++|+||||+||||+++++++..-. ..|- .+... ...++ ..+.++..
T Consensus 15 ~~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~------~vpa~------~~~i~---~~~~i~~~ 79 (218)
T cd03286 15 ASSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGM------DVPAK------SMRLS---LVDRIFTR 79 (218)
T ss_pred CCCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCC------ccCcc------ccEec---cccEEEEe
Confidence 356789999999999999999999999999999999886322 1121 11110 00111 01111222
Q ss_pred CCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q 027067 100 FTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEY 179 (229)
Q Consensus 100 ~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~ 179 (229)
+...|++.. .-++++ .|.+++.-....+.+|.++|+|||++|+|+.....+..
T Consensus 80 ~~~~d~~~~--------------------------~~StF~-~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ 132 (218)
T cd03286 80 IGARDDIMK--------------------------GESTFM-VELSETANILRHATPDSLVILDELGRGTSTHDGYAIAH 132 (218)
T ss_pred cCccccccc--------------------------CcchHH-HHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHH
Confidence 222222210 001111 13334433333457899999999999999987655544
Q ss_pred H-HHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 180 I-IAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 180 ~-l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
. ++.+.+. +.++|++||+.+.+.....
T Consensus 133 ail~~L~~~~~~~~i~~TH~~el~~~~~~ 161 (218)
T cd03286 133 AVLEYLVKKVKCLTLFSTHYHSLCDEFHE 161 (218)
T ss_pred HHHHHHHHhcCCcEEEEeccHHHHHHhhc
Confidence 4 6666665 8899999999998887653
No 429
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.56 E-value=5e-14 Score=119.10 Aligned_cols=148 Identities=18% Similarity=0.176 Sum_probs=89.1
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHH-HHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067 11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTF-LRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW 89 (229)
Q Consensus 11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTL-l~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 89 (229)
+.++++.+.+++ .+++|+++.|+|+|||||||| +++++++.++....+++....
T Consensus 8 ~~~~~ld~~l~g---------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~---------------- 62 (230)
T PRK08533 8 LSRDELHKRLGG---------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQL---------------- 62 (230)
T ss_pred EEEeeeehhhCC---------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC----------------
Confidence 455666665544 278999999999999999999 699999876554444443211
Q ss_pred eecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhc----CCCeEEEeCC
Q 027067 90 LSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAI----DRPIWLLDEP 165 (229)
Q Consensus 90 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~----~p~illlDEP 165 (229)
+..+.+.....+.. ...+.... +.-...+-.+ .+|+++.++-.+.+.+-. +|+++++|||
T Consensus 63 -----------~~~~~~~~~~~~g~---~~~~~~~~-~~l~~~~~~~-~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~ 126 (230)
T PRK08533 63 -----------TTTEFIKQMMSLGY---DINKKLIS-GKLLYIPVYP-LLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSL 126 (230)
T ss_pred -----------CHHHHHHHHHHhCC---chHHHhhc-CcEEEEEecc-cccChHHHHHHHHHHHHHHHhcCCCEEEEECc
Confidence 22222221111100 01111110 1000111122 366666666555554433 6999999999
Q ss_pred CCCC----CHHHHHHHHHHHHHHHhCCcEEEEEeCChhh
Q 027067 166 SVAL----DYDGVRLLEYIIAEHRKKGGIVIVATHLPIQ 200 (229)
Q Consensus 166 t~~L----D~~~~~~l~~~l~~~~~~g~tii~vtH~~~~ 200 (229)
|+++ |+...+.+.++++.++++|.|+++ ||+...
T Consensus 127 t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~-t~~~~~ 164 (230)
T PRK08533 127 SSLISNDASEVAVNDLMAFFKRISSLNKVIIL-TANPKE 164 (230)
T ss_pred cHHhcCCcchHHHHHHHHHHHHHHhCCCEEEE-Eecccc
Confidence 9999 777777888888888777876655 565443
No 430
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.54 E-value=1.8e-14 Score=119.23 Aligned_cols=67 Identities=34% Similarity=0.411 Sum_probs=54.7
Q ss_pred CCCCCChhHHHHHHHHHHHhcCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhH
Q 027067 135 KARMLSMGQRKRLQLARLLAIDR---PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQI 201 (229)
Q Consensus 135 ~~~~LSgGqkqRv~lAral~~~p---~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~ 201 (229)
+...+|.|++|.+.++.++...+ .++++|||-++|.|..+..+.+++....+.+.-||++||++..+
T Consensus 233 ~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 233 PLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp GGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred eeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 45677999999999998888877 89999999999999999999999987765578999999998664
No 431
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.50 E-value=2.6e-13 Score=109.88 Aligned_cols=68 Identities=26% Similarity=0.346 Sum_probs=58.2
Q ss_pred hcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhh
Q 027067 132 AKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQ 200 (229)
Q Consensus 132 ~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~ 200 (229)
..+..+..|.||-=---+.+.+- +.-++|||||-++|.+..+-.+...++.+.+.|..+||+||.+-.
T Consensus 123 ~~~sLh~~SHGEsf~~i~~~rf~-~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiL 190 (233)
T COG3910 123 GGRSLHHMSHGESFLAIFHNRFN-GQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPIL 190 (233)
T ss_pred CCcchhhhccchHHHHHHHHHhc-cCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhh
Confidence 34567789999987777777765 456999999999999999999999999999999999999998743
No 432
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.49 E-value=1.5e-13 Score=125.29 Aligned_cols=156 Identities=16% Similarity=0.112 Sum_probs=114.6
Q ss_pred cEEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 10 RLLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 10 ~l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
.++-+.++..|. +..+++.+ |.+.+|+.++|+|+||+|||||+++|+|..+|+.|.|.+.|+..
T Consensus 130 ~~~r~~i~~~l~TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg-------------- 194 (432)
T PRK06793 130 AFEREEITDVFETGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG-------------- 194 (432)
T ss_pred chheechhhccCCCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc--------------
Confidence 467777777774 46788885 99999999999999999999999999999999999887666432
Q ss_pred EeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHHh-------cCCCeE
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARLLA-------IDRPIW 160 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~-------~~p~il 160 (229)
.+|.|.+....... ++. ...=....+.|.|+|+|++.+.+.+ .++-++
T Consensus 195 -----------~ev~e~~~~~l~~~-------------gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLl 250 (432)
T PRK06793 195 -----------REVKDFIRKELGEE-------------GMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLL 250 (432)
T ss_pred -----------ccHHHHHHHHhhhc-------------ccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 13334332111000 110 0011346788999999999999988 789999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 161 LLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 161 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
++|+||+..|+. .++...+.+....|.+..+.||....++.+..
T Consensus 251 ilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag~ 294 (432)
T PRK06793 251 MMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLERSGK 294 (432)
T ss_pred EecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHHhcc
Confidence 999999999996 45555555555457888888997777777654
No 433
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.49 E-value=8.1e-14 Score=140.16 Aligned_cols=78 Identities=21% Similarity=0.125 Sum_probs=70.5
Q ss_pred ChhhcCCCCCCChhHHHHHHHHHHHhc----------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCh
Q 027067 129 GRLAKEKARMLSMGQRKRLQLARLLAI----------DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLP 198 (229)
Q Consensus 129 ~~~~~~~~~~LSgGqkqRv~lAral~~----------~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~ 198 (229)
....++++.+|||||++||+||+||+. +|++||+||||++||+.+...+.+.|..++..|.+|+||||++
T Consensus 941 ~~~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~ 1020 (1042)
T TIGR00618 941 YTGSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVP 1020 (1042)
T ss_pred CCCCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH
Confidence 345567899999999999999999986 7999999999999999999999999999987899999999999
Q ss_pred hhHHhhhc
Q 027067 199 IQIEDAMN 206 (229)
Q Consensus 199 ~~~~~~~~ 206 (229)
+....+++
T Consensus 1021 ~~~~~~~~ 1028 (1042)
T TIGR00618 1021 EFRERIPH 1028 (1042)
T ss_pred HHHHhhCC
Confidence 88877654
No 434
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.48 E-value=2.2e-14 Score=122.48 Aligned_cols=160 Identities=15% Similarity=0.145 Sum_probs=94.0
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEE--EEc--CEeCCCCchhhhhhhcc---eEeecccccCCCCCHH
Q 027067 31 ISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEI--LWN--GHDITQSGIFHQYKLQL---NWLSLKDAVKEKFTVL 103 (229)
Q Consensus 31 l~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I--~~~--g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~tv~ 103 (229)
+.+.+||.++|+||+|+|||||++.+++......+++ ++. +..- ... ......+ -++.+-.. +..
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~--~ev-~el~~~I~~~~v~~~~~~-----~~~ 82 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERP--EEV-TDMQRSVKGEVIASTFDE-----PPE 82 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCC--ccH-HHHHHHhccEEEEecCCC-----CHH
Confidence 4788999999999999999999999999887653322 221 1110 111 1111111 11211111 112
Q ss_pred HhHHH-------HHHh--cCcc-----ccHHHHHHHhCCChhhcCCCCCCChhH--------HHHHHHHHHHhcCCCeEE
Q 027067 104 DNVQW-------FEVL--EGKQ-----GNSLPALELMGLGRLAKEKARMLSMGQ--------RKRLQLARLLAIDRPIWL 161 (229)
Q Consensus 104 e~l~~-------~~~~--~~~~-----~~~~~~l~~~~l~~~~~~~~~~LSgGq--------kqRv~lAral~~~p~ill 161 (229)
..+.. .... .+.. ++...+.+ +..+........+|||+ +||+++||++..+++|.+
T Consensus 83 ~~~~~~~~~~~~a~~~~~~G~~vll~iDei~r~a~--a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~ 160 (249)
T cd01128 83 RHVQVAEMVLEKAKRLVEHGKDVVILLDSITRLAR--AYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTI 160 (249)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHhhh--hhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEE
Confidence 21111 0000 0100 01111111 11223334556689999 999999999999999999
Q ss_pred EeCCCCCCCHHHH-HHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067 162 LDEPSVALDYDGV-RLLEYIIAEHRKKGGIVIVATHLPIQIEDA 204 (229)
Q Consensus 162 lDEPt~~LD~~~~-~~l~~~l~~~~~~g~tii~vtH~~~~~~~~ 204 (229)
| ||+.+|..+. ..+. +.+++..+.|.|+.||++.....+
T Consensus 161 l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~~~ 200 (249)
T cd01128 161 I--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERRIF 200 (249)
T ss_pred e--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhCCCC
Confidence 9 9999996433 2132 566665678999999998776653
No 435
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.47 E-value=2.9e-13 Score=109.74 Aligned_cols=77 Identities=9% Similarity=0.013 Sum_probs=63.4
Q ss_pred HHhCCChhhcCCCCCCChhHHH------HHHHHHHHhcCCCeEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCcEEEEE
Q 027067 124 ELMGLGRLAKEKARMLSMGQRK------RLQLARLLAIDRPIWLLDEPSVALD---YDGVRLLEYIIAEHRKKGGIVIVA 194 (229)
Q Consensus 124 ~~~~l~~~~~~~~~~LSgGqkq------Rv~lAral~~~p~illlDEPt~~LD---~~~~~~l~~~l~~~~~~g~tii~v 194 (229)
...+.....+..+..+|+|++| +...+.+...+|+++++|||++.+| ...+..+.+++..+++.|.|+|++
T Consensus 57 ~~~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v 136 (187)
T cd01124 57 EDEGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLT 136 (187)
T ss_pred HhcCCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 3445545667888999999998 5555666778999999999999999 777788888888888889999999
Q ss_pred eCChhh
Q 027067 195 THLPIQ 200 (229)
Q Consensus 195 tH~~~~ 200 (229)
+|+...
T Consensus 137 ~~~~~~ 142 (187)
T cd01124 137 SEQSGL 142 (187)
T ss_pred eccccC
Confidence 998664
No 436
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.45 E-value=1.4e-13 Score=129.74 Aligned_cols=66 Identities=30% Similarity=0.365 Sum_probs=59.1
Q ss_pred CCCCCCChhHHHHHHHHHHHh----------cCCCeEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhH
Q 027067 134 EKARMLSMGQRKRLQLARLLA----------IDRPIWLLDEPS-VALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQI 201 (229)
Q Consensus 134 ~~~~~LSgGqkqRv~lAral~----------~~p~illlDEPt-~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~ 201 (229)
..+.+|||||+||++||+||+ .+|+++|||||| ++||+.++..+.+++..+ .|.|||++||++...
T Consensus 464 ~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~~~ 540 (562)
T PHA02562 464 FSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDHDP 540 (562)
T ss_pred cChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchhch
Confidence 356899999999999999988 599999999998 789999999999999987 578999999996544
No 437
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.44 E-value=3e-13 Score=138.73 Aligned_cols=79 Identities=27% Similarity=0.280 Sum_probs=68.1
Q ss_pred CCCCCChhHHH------HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-----hCCcEEEEEeCChhhHHh
Q 027067 135 KARMLSMGQRK------RLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHR-----KKGGIVIVATHLPIQIED 203 (229)
Q Consensus 135 ~~~~LSgGqkq------Rv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~-----~~g~tii~vtH~~~~~~~ 203 (229)
.++.||||||| |++||+|++.+|++|+|||||++||+.+...+...+..+. ..|.+||+||||+.++..
T Consensus 1196 ~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~ 1275 (1311)
T TIGR00606 1196 MRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVEL 1275 (1311)
T ss_pred CCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHH
Confidence 45789999999 9999999999999999999999999999988888777752 237899999999999999
Q ss_pred hhccCCCCCC
Q 027067 204 AMNLRLPPRF 213 (229)
Q Consensus 204 ~~~~~~~~~~ 213 (229)
++....+..|
T Consensus 1276 ~~~~~~~~~~ 1285 (1311)
T TIGR00606 1276 LGRSEYVEKF 1285 (1311)
T ss_pred Hhhcccccee
Confidence 8865554443
No 438
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.43 E-value=3.2e-13 Score=127.84 Aligned_cols=69 Identities=20% Similarity=0.270 Sum_probs=61.5
Q ss_pred CCCChhHHHHHHHHHHHhcC----CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067 137 RMLSMGQRKRLQLARLLAID----RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 137 ~~LSgGqkqRv~lAral~~~----p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~ 207 (229)
..|||||+||++||++++.. |++|||||||+|||+.....+.+.+..+.+ +.+||+|||++..+. .+|.
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~~~~-~ad~ 511 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQVAA-HADA 511 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHHHHH-hcCe
Confidence 47899999999999999985 699999999999999999999999999864 899999999998775 4543
No 439
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.42 E-value=4.4e-13 Score=134.73 Aligned_cols=72 Identities=25% Similarity=0.201 Sum_probs=65.2
Q ss_pred hcCCCCCCChhHHHHHHHHHHHhc--------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067 132 AKEKARMLSMGQRKRLQLARLLAI--------DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 132 ~~~~~~~LSgGqkqRv~lAral~~--------~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~ 203 (229)
..+++.+|||||+++++||+||+. +|++||+||||++||+.+...+.+.|..+++.|+||+||||.....+.
T Consensus 943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~ 1022 (1047)
T PRK10246 943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKER 1022 (1047)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHh
Confidence 357899999999999999999996 899999999999999999999999999998889999999996554433
No 440
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.42 E-value=6.8e-13 Score=104.02 Aligned_cols=132 Identities=15% Similarity=0.070 Sum_probs=84.4
Q ss_pred EEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHHhcCccc
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQG 117 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~ 117 (229)
+++|.|+||+||||+++.+++...+..|.|.+.+.+..... . .++.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~----~-------------------~~~~~~~~~~----- 52 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEE----L-------------------TERLIGESLK----- 52 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHH----H-------------------HHHHhhhhhc-----
Confidence 47899999999999999999988776677766443321110 0 0000000000
Q ss_pred cHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCC----------CCHHHHHHHHHHHHHHHhC
Q 027067 118 NSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVA----------LDYDGVRLLEYIIAEHRKK 187 (229)
Q Consensus 118 ~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~----------LD~~~~~~l~~~l~~~~~~ 187 (229)
...+...+........+.++.+++..+++...+|+++++|||++- .|....+.+.++....++.
T Consensus 53 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 126 (165)
T cd01120 53 ------GALDNLIIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKG 126 (165)
T ss_pred ------cccccEEEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcC
Confidence 000001112222334455566688899999999999999999954 4555567777877777777
Q ss_pred CcEEEEEeCChhhHHh
Q 027067 188 GGIVIVATHLPIQIED 203 (229)
Q Consensus 188 g~tii~vtH~~~~~~~ 203 (229)
+.|+|+++|.....+.
T Consensus 127 ~~~vv~~~~~~~~~~~ 142 (165)
T cd01120 127 GVTVIFTLQVPSGDKG 142 (165)
T ss_pred CceEEEEEecCCcccc
Confidence 9999999998765433
No 441
>PRK10869 recombination and repair protein; Provisional
Probab=99.40 E-value=6.7e-13 Score=125.22 Aligned_cols=69 Identities=20% Similarity=0.287 Sum_probs=60.9
Q ss_pred CCChhHHHHHHHHHHHhc----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhccC
Q 027067 138 MLSMGQRKRLQLARLLAI----DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNLR 208 (229)
Q Consensus 138 ~LSgGqkqRv~lAral~~----~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~~ 208 (229)
.|||||+|||+||++++. +|+++|||||++|||..+...+.+.+..+.+ +.+||+|||++..+ ..+|.+
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~~~-~~ad~~ 502 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQVA-GCGHQH 502 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHH-HhCCEE
Confidence 479999999999999997 5899999999999999999999999999864 68999999999765 455433
No 442
>PRK03918 chromosome segregation protein; Provisional
Probab=99.38 E-value=1.1e-12 Score=129.86 Aligned_cols=73 Identities=34% Similarity=0.388 Sum_probs=63.0
Q ss_pred cCCCCCCChhHHH------HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 133 KEKARMLSMGQRK------RLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 133 ~~~~~~LSgGqkq------Rv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
++++..|||||+| |++||++++.+|+++||||||++||+..+..+.+++..+...+.+||+|||+++. ..++|
T Consensus 783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~-~~~~d 861 (880)
T PRK03918 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEEL-KDAAD 861 (880)
T ss_pred cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHH-HHhCC
Confidence 5678999999999 5566678889999999999999999999999999998876667899999999864 45555
No 443
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.37 E-value=2e-12 Score=118.52 Aligned_cols=155 Identities=14% Similarity=0.169 Sum_probs=93.2
Q ss_pred CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCch-------hhhhhhcceEeeccc
Q 027067 22 AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI-------FHQYKLQLNWLSLKD 94 (229)
Q Consensus 22 ~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~-------~~~~~~~~~~~~~~~ 94 (229)
+..+++++ |.+.+|++++|+|+||+|||||+++|+|+.+|+.|.|.+.|+.-..... ....++.+.++.+.+
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~ 223 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD 223 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC
Confidence 46789999 9999999999999999999999999999999999999996654322110 011234556664322
Q ss_pred ccCCCCCHHHhHHH-HHHhcCccccHHHHHHHhCCChhhcCCCCCCCh-hHHHH-HHHHHHHhcCCCeEEEeCC--CCCC
Q 027067 95 AVKEKFTVLDNVQW-FEVLEGKQGNSLPALELMGLGRLAKEKARMLSM-GQRKR-LQLARLLAIDRPIWLLDEP--SVAL 169 (229)
Q Consensus 95 ~~~~~~tv~e~l~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSg-GqkqR-v~lAral~~~p~illlDEP--t~~L 169 (229)
. +..+.+.- +.. -...|.+...|..-+. -..+|+- -|.+| ++ +.+.|| |+|+
T Consensus 224 ~-----~~~~r~~~~~~a-----~~iAEyfr~~g~~Vll--~~Dsltr~A~A~rEis-----------l~~ge~P~~~G~ 280 (438)
T PRK07721 224 Q-----PALMRIKGAYTA-----TAIAEYFRDQGLNVML--MMDSVTRVAMAQREIG-----------LAVGEPPTTKGY 280 (438)
T ss_pred C-----CHHHHHHHHHHH-----HHHHHHHHHCCCcEEE--EEeChHHHHHHHHHHH-----------HhcCCCCccccC
Confidence 1 22221110 000 0111222222221000 0011110 01111 11 123454 7899
Q ss_pred CHHHHHHHHHHHHHHHh--CCc-----EEEEEeCChhh
Q 027067 170 DYDGVRLLEYIIAEHRK--KGG-----IVIVATHLPIQ 200 (229)
Q Consensus 170 D~~~~~~l~~~l~~~~~--~g~-----tii~vtH~~~~ 200 (229)
|+.....+.++++.+.. .|. ||++.+||+++
T Consensus 281 dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e 318 (438)
T PRK07721 281 TPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE 318 (438)
T ss_pred CHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc
Confidence 99999999999998863 575 99999999874
No 444
>PRK13695 putative NTPase; Provisional
Probab=99.37 E-value=7.9e-13 Score=106.79 Aligned_cols=62 Identities=15% Similarity=-0.007 Sum_probs=47.9
Q ss_pred cCCCCCCChhHHHHHHHHHHHhcCCCeEEEeC--CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCh
Q 027067 133 KEKARMLSMGQRKRLQLARLLAIDRPIWLLDE--PSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLP 198 (229)
Q Consensus 133 ~~~~~~LSgGqkqRv~lAral~~~p~illlDE--Pt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~ 198 (229)
.++...+|++++-++.+++..+.+|+++++|| |+.++|.... +.+..+.+.+.++|+++|+.
T Consensus 73 ~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~----~~l~~~~~~~~~~i~v~h~~ 136 (174)
T PRK13695 73 GKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFV----KAVEEVLDSEKPVIATLHRR 136 (174)
T ss_pred eeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHH----HHHHHHHhCCCeEEEEECch
Confidence 44566799999999999999999999999999 5445554433 44444445688999999984
No 445
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.35 E-value=5.6e-13 Score=121.96 Aligned_cols=52 Identities=29% Similarity=0.401 Sum_probs=48.4
Q ss_pred eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCcc-EEEEcCEeCCCC
Q 027067 24 QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAG-EILWNGHDITQS 77 (229)
Q Consensus 24 ~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G-~I~~~g~~~~~~ 77 (229)
++|++||+++++||+++|+|||||||||||+ +|+.+|++| +|.++|.++...
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~ 72 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSP 72 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCC
Confidence 5899999999999999999999999999999 788888888 799999998764
No 446
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.30 E-value=1.3e-11 Score=108.59 Aligned_cols=117 Identities=17% Similarity=0.119 Sum_probs=75.0
Q ss_pred eeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHH
Q 027067 29 VNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQW 108 (229)
Q Consensus 29 vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~ 108 (229)
+++.+..|+.++|+||+|||||||+++|++++++..|.+.+.+ ....... ....+.+..+.
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied--~~El~~~--~~~~~~l~~~~--------------- 197 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED--TREIFLP--HPNYVHLFYSK--------------- 197 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcC--ccccCCC--CCCEEEEEecC---------------
Confidence 4567889999999999999999999999999999999888742 2111100 00000000000
Q ss_pred HHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 027067 109 FEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKG 188 (229)
Q Consensus 109 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g 188 (229)
. .......| ..-.++.+|-++|+++++|||.+ .....+++... .|
T Consensus 198 -------~----------------~~~~~~~~----~~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~-~g 242 (308)
T TIGR02788 198 -------G----------------GQGLAKVT----PKDLLQSCLRMRPDRIILGELRG-------DEAFDFIRAVN-TG 242 (308)
T ss_pred -------C----------------CCCcCccC----HHHHHHHHhcCCCCeEEEeccCC-------HHHHHHHHHHh-cC
Confidence 0 00001111 22246667889999999999996 23455666665 45
Q ss_pred c-EEEEEeCChh
Q 027067 189 G-IVIVATHLPI 199 (229)
Q Consensus 189 ~-tii~vtH~~~ 199 (229)
. +++.++|..+
T Consensus 243 ~~~~i~T~Ha~~ 254 (308)
T TIGR02788 243 HPGSITTLHAGS 254 (308)
T ss_pred CCeEEEEEeCCC
Confidence 4 5799999876
No 447
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.30 E-value=4.6e-12 Score=127.84 Aligned_cols=73 Identities=29% Similarity=0.353 Sum_probs=63.9
Q ss_pred hcCCCCCCChhHHHHHHHHHHHh----cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 132 AKEKARMLSMGQRKRLQLARLLA----IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 132 ~~~~~~~LSgGqkqRv~lAral~----~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
.+.++..|||||+||++||++++ .+|+++||||||++||+..+..+..++..+.+ +.+||+|||++..+. .+|
T Consensus 1083 ~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~~~~-~~d 1159 (1179)
T TIGR02168 1083 KNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKGTME-VAD 1159 (1179)
T ss_pred ccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChhHHH-Hhh
Confidence 45788999999999999999985 67799999999999999999999999988854 478999999988764 454
No 448
>PRK01156 chromosome segregation protein; Provisional
Probab=99.28 E-value=9.8e-12 Score=123.44 Aligned_cols=72 Identities=26% Similarity=0.372 Sum_probs=60.9
Q ss_pred CCCCCCChhHHHHHHH------HHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHH-HhCC--cEEEEEeCChhhHHhh
Q 027067 134 EKARMLSMGQRKRLQL------ARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEH-RKKG--GIVIVATHLPIQIEDA 204 (229)
Q Consensus 134 ~~~~~LSgGqkqRv~l------Aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~-~~~g--~tii~vtH~~~~~~~~ 204 (229)
..+..|||||++|++| |++++.+|++++|||||++||+..+..+.+++... +..+ .+||++||+...+ .+
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~-~~ 875 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELL-SV 875 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHH-Hh
Confidence 4688999999999975 59999999999999999999999999999988764 3333 4899999999866 45
Q ss_pred hc
Q 027067 205 MN 206 (229)
Q Consensus 205 ~~ 206 (229)
+|
T Consensus 876 ~d 877 (895)
T PRK01156 876 AD 877 (895)
T ss_pred cC
Confidence 54
No 449
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.25 E-value=4.8e-10 Score=84.51 Aligned_cols=118 Identities=29% Similarity=0.311 Sum_probs=80.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHCCCCCCc-cEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHHhc
Q 027067 35 DGGALVLTGTNGSGKSTFLRMLAGFSKPSA-GEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLE 113 (229)
Q Consensus 35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~-G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~ 113 (229)
++..+.|+||+|+||||+++.++....... +-++++......... .+..
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~------- 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVL-----------------------DQLL------- 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCH-----------------------HHHH-------
Confidence 367899999999999999999999987654 445554433221100 0000
Q ss_pred CccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH------HHHHHHhC
Q 027067 114 GKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEY------IIAEHRKK 187 (229)
Q Consensus 114 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~------~l~~~~~~ 187 (229)
...........++++..+..+++|-..+|.++++||+..-.+......... ........
T Consensus 51 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (148)
T smart00382 51 ---------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEK 115 (148)
T ss_pred ---------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcC
Confidence 112233445777888888888888888899999999999999887654442 22333345
Q ss_pred CcEEEEEeCC
Q 027067 188 GGIVIVATHL 197 (229)
Q Consensus 188 g~tii~vtH~ 197 (229)
+..+|+++|.
T Consensus 116 ~~~~i~~~~~ 125 (148)
T smart00382 116 NLTVILTTND 125 (148)
T ss_pred CCEEEEEeCC
Confidence 6788888885
No 450
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.24 E-value=1e-10 Score=115.13 Aligned_cols=49 Identities=20% Similarity=0.086 Sum_probs=45.7
Q ss_pred hcCCCeEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHH
Q 027067 154 AIDRPIWLLDEPSVAL-DYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIE 202 (229)
Q Consensus 154 ~~~p~illlDEPt~~L-D~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~ 202 (229)
..+|.++++|||+.+| |+...+.+.+.++..++.|.+++++||+++++.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~ 699 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAE 699 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh
Confidence 5799999999999999 688999999999999888999999999999886
No 451
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=99.18 E-value=1.3e-10 Score=98.08 Aligned_cols=141 Identities=17% Similarity=0.197 Sum_probs=81.4
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHH-CCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHH
Q 027067 32 SIHDGGALVLTGTNGSGKSTFLRMLA-GFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFE 110 (229)
Q Consensus 32 ~i~~Ge~~~iiG~NGsGKSTLl~~i~-Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~ 110 (229)
-+++|.++.|.|++|||||||...++ +..+ ..+.+.|-..+ . .. .+...+.. . ..+.+.+.+..
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~~~y~~~e--~-~~-~~~~~~~~------~--~g~~~~~~~~~-- 85 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK-QGKKVYVITTE--N-TS-KSYLKQME------S--VKIDISDFFLW-- 85 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHh-CCCEEEEEEcC--C-CH-HHHHHHHH------H--CCCChhHHHhC--
Confidence 47899999999999999999998774 3222 23344332211 0 00 01111000 0 00111111100
Q ss_pred HhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhc--CCCeEEEeCCCCCCC---HHHHHHHHHHHHHHH
Q 027067 111 VLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAI--DRPIWLLDEPSVALD---YDGVRLLEYIIAEHR 185 (229)
Q Consensus 111 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~--~p~illlDEPt~~LD---~~~~~~l~~~l~~~~ 185 (229)
+ .+.+.+..-......|.++++.+..++.++. +|+++++||||+.+| ......+...+..++
T Consensus 86 ---g----------~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~ 152 (234)
T PRK06067 86 ---G----------YLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLV 152 (234)
T ss_pred ---C----------CceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 0 0001011111234557788999999999987 999999999996544 444444444566667
Q ss_pred hCCcEEEEEeCChhh
Q 027067 186 KKGGIVIVATHLPIQ 200 (229)
Q Consensus 186 ~~g~tii~vtH~~~~ 200 (229)
++|.|+++++|+...
T Consensus 153 ~~g~tvllt~~~~~~ 167 (234)
T PRK06067 153 DLGKTILITLHPYAF 167 (234)
T ss_pred hCCCEEEEEecCCcC
Confidence 778999999997654
No 452
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.17 E-value=1.4e-10 Score=107.31 Aligned_cols=145 Identities=19% Similarity=0.206 Sum_probs=92.5
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHH
Q 027067 25 ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLD 104 (229)
Q Consensus 25 iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e 104 (229)
++++.++.+.+|++++++||||+||||++..|++.+....|.. .++++..+. ...++.|
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~------------------kV~LI~~Dt---~RigA~E 303 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGAS------------------KVALLTTDS---YRIGGHE 303 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCC------------------eEEEEeCCc---cchhHHH
Confidence 4567777888999999999999999999999999876666532 123333332 2357888
Q ss_pred hHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHH-HHHHHHHHhcCC-----CeEEEeCCCCCCCHHH
Q 027067 105 NVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRK-RLQLARLLAIDR-----PIWLLDEPSVALDYDG 173 (229)
Q Consensus 105 ~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkq-Rv~lAral~~~p-----~illlDEPt~~LD~~~ 173 (229)
++.++....+. ...........++.+.....+.+.+.+++- .+.-..+++.++ .+|+||.++.+
T Consensus 304 QLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~----- 378 (484)
T PRK06995 304 QLRIYGKILGVPVHAVKDAADLRLALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG----- 378 (484)
T ss_pred HHHHHHHHhCCCeeccCCchhHHHHHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH-----
Confidence 88876654321 123334455666665545566665444432 223334444444 68999999886
Q ss_pred HHHHHHHHHHHHhCCcEEEEEeC
Q 027067 174 VRLLEYIIAEHRKKGGIVIVATH 196 (229)
Q Consensus 174 ~~~l~~~l~~~~~~g~tii~vtH 196 (229)
..+.+.++.++..+.+-++.|+
T Consensus 379 -~~l~~i~~~f~~~~~~g~IlTK 400 (484)
T PRK06995 379 -DTLNEVVQAYRGPGLAGCILTK 400 (484)
T ss_pred -HHHHHHHHHhccCCCCEEEEeC
Confidence 4455556666555666556677
No 453
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.16 E-value=5.3e-11 Score=120.43 Aligned_cols=72 Identities=22% Similarity=0.279 Sum_probs=62.5
Q ss_pred cCCCCCCChhHHHHHHHHHHHhc----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 133 KEKARMLSMGQRKRLQLARLLAI----DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 133 ~~~~~~LSgGqkqRv~lAral~~----~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
.+++..||||||++++||++|+. +|+++|||||+++||+..+..+..+|..+.. +.++|++||+...+ ..+|
T Consensus 1069 ~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~~~-~~~d 1144 (1164)
T TIGR02169 1069 VQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSPMI-EYAD 1144 (1164)
T ss_pred CCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHHHH-Hhcc
Confidence 45678999999999999999985 7899999999999999999999999988754 57899999998655 4444
No 454
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=99.14 E-value=7.4e-10 Score=91.53 Aligned_cols=109 Identities=21% Similarity=0.296 Sum_probs=66.8
Q ss_pred EEEEEcCCCccHHHHHHHHHCCCCC-CccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHHhcCcc
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFSKP-SAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQ 116 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~~p-~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~ 116 (229)
++.|+||+||||||+++.+++.+.+ ..|.|...+.++... ......++.|..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~-----~~~~~~~i~q~~---------------------- 55 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFV-----HESKRSLINQRE---------------------- 55 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcccc-----ccCccceeeecc----------------------
Confidence 7899999999999999999888764 356766544433110 000001111100
Q ss_pred ccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeC
Q 027067 117 GNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATH 196 (229)
Q Consensus 117 ~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH 196 (229)
++. ....++ =+++++|..+|+++++|||. |.+. +...++ ....|..++.++|
T Consensus 56 ---------vg~------~~~~~~------~~i~~aLr~~pd~ii~gEir---d~e~---~~~~l~-~a~~G~~v~~t~H 107 (198)
T cd01131 56 ---------VGL------DTLSFE------NALKAALRQDPDVILVGEMR---DLET---IRLALT-AAETGHLVMSTLH 107 (198)
T ss_pred ---------cCC------CccCHH------HHHHHHhcCCcCEEEEcCCC---CHHH---HHHHHH-HHHcCCEEEEEec
Confidence 000 001111 14889999999999999996 5543 333333 3456899999999
Q ss_pred ChhhH
Q 027067 197 LPIQI 201 (229)
Q Consensus 197 ~~~~~ 201 (229)
..+..
T Consensus 108 a~~~~ 112 (198)
T cd01131 108 TNSAA 112 (198)
T ss_pred CCcHH
Confidence 87654
No 455
>PRK02224 chromosome segregation protein; Provisional
Probab=99.12 E-value=1.3e-10 Score=115.29 Aligned_cols=71 Identities=34% Similarity=0.439 Sum_probs=61.0
Q ss_pred CCCCCChhHHH------HHHHHHHHhcC-----C-CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEEeCChhhH
Q 027067 135 KARMLSMGQRK------RLQLARLLAID-----R-PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGG-IVIVATHLPIQI 201 (229)
Q Consensus 135 ~~~~LSgGqkq------Rv~lAral~~~-----p-~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~-tii~vtH~~~~~ 201 (229)
.+..||||||+ |+++|++++.+ | +++|+||||++||+..+..+..+|..+...|. +||+|||++..+
T Consensus 778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~ 857 (880)
T PRK02224 778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELV 857 (880)
T ss_pred ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHH
Confidence 46799999999 99999999864 2 67999999999999999999999999876664 799999999887
Q ss_pred Hhhhc
Q 027067 202 EDAMN 206 (229)
Q Consensus 202 ~~~~~ 206 (229)
. .+|
T Consensus 858 ~-~ad 861 (880)
T PRK02224 858 G-AAD 861 (880)
T ss_pred H-hcC
Confidence 5 344
No 456
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.10 E-value=1.3e-10 Score=104.56 Aligned_cols=64 Identities=33% Similarity=0.373 Sum_probs=57.4
Q ss_pred CCCChhHHHHHHHHHHHhc---------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067 137 RMLSMGQRKRLQLARLLAI---------DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 137 ~~LSgGqkqRv~lAral~~---------~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~ 203 (229)
..+|.||+|++.||.+|+. +|+|||||||+++||+..++.+.+.+... |.+|+++||+++.+..
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~~~~~ 346 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLDHLKE 346 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChhhccc
Confidence 4799999999999999999 99999999999999999999988888643 6799999999876554
No 457
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=99.08 E-value=8.9e-12 Score=116.04 Aligned_cols=149 Identities=12% Similarity=0.096 Sum_probs=93.1
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHH--HCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHH
Q 027067 32 SIHDGGALVLTGTNGSGKSTFLRML--AGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWF 109 (229)
Q Consensus 32 ~i~~Ge~~~iiG~NGsGKSTLl~~i--~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~ 109 (229)
-+.+|.++.|.|++|||||||..-. .|..+..+.-+++....-. ....+....++|-.+...- .+++.+.
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~--~~l~~~~~~~G~~~~~~~~------~g~l~~~ 88 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESP--QDIIKNARSFGWDLQKLVD------EGKLFIL 88 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCH--HHHHHHHHHcCCCHHHHhh------cCceEEE
Confidence 4779999999999999999999765 5666555556666543211 1111222333432211000 0000000
Q ss_pred HHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHH--HHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 027067 110 EVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLA--RLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK 187 (229)
Q Consensus 110 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lA--ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~ 187 (229)
.. ........+++.+++.+..++.+..+|+|++|||.|+ .++...|+.. ...++.+.++++.+++.
T Consensus 89 ~~--~~~~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~~ 156 (484)
T TIGR02655 89 DA--SPDPEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQI 156 (484)
T ss_pred ec--CchhccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHHC
Confidence 00 0000111234456667778888999999999999999 5665555444 45677888899888888
Q ss_pred CcEEEEEeCChhh
Q 027067 188 GGIVIVATHLPIQ 200 (229)
Q Consensus 188 g~tii~vtH~~~~ 200 (229)
|.|+|++||+.+.
T Consensus 157 g~TvLLtsh~~~~ 169 (484)
T TIGR02655 157 GVTTVMTTERIEE 169 (484)
T ss_pred CCEEEEEecCccc
Confidence 9999999998754
No 458
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.07 E-value=8.1e-10 Score=105.80 Aligned_cols=83 Identities=33% Similarity=0.393 Sum_probs=72.5
Q ss_pred HHHHhCCChh-hcCCCCCCChhHHHHHHHHHHHhcC--CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCh
Q 027067 122 ALELMGLGRL-AKEKARMLSMGQRKRLQLARLLAID--RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLP 198 (229)
Q Consensus 122 ~l~~~~l~~~-~~~~~~~LSgGqkqRv~lAral~~~--p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~ 198 (229)
.|..+||.-+ ++|...+|||||.||+-||.-+=.+ -=+++||||+.||-+.--+.+.+.|+.++..|.|+|+|.||.
T Consensus 464 fL~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe 543 (935)
T COG0178 464 FLVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE 543 (935)
T ss_pred HHHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH
Confidence 3556788644 6899999999999999999998765 357899999999999999999999999999999999999998
Q ss_pred hhHHhh
Q 027067 199 IQIEDA 204 (229)
Q Consensus 199 ~~~~~~ 204 (229)
+.+..|
T Consensus 544 dti~~A 549 (935)
T COG0178 544 DTIRAA 549 (935)
T ss_pred HHHhhc
Confidence 887665
No 459
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=99.05 E-value=7.3e-10 Score=101.50 Aligned_cols=86 Identities=19% Similarity=0.208 Sum_probs=67.2
Q ss_pred CcEEEEeEEEEe-CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcC---EeCCCCch--hh-
Q 027067 9 PRLLLKNVSCMR-NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNG---HDITQSGI--FH- 81 (229)
Q Consensus 9 ~~l~l~~l~~~~-~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g---~~~~~~~~--~~- 81 (229)
+.++.+++++.| .+..+++.++ .|.+||+++|+|+||||||||+++|+++.+|+.|.|.+.| +++..... ..
T Consensus 138 ~~~~r~~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~~ 216 (450)
T PRK06002 138 PAMTRARVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLAD 216 (450)
T ss_pred CCeEeecceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHHH
Confidence 469999999998 4678999996 9999999999999999999999999999999999998864 44432111 11
Q ss_pred hhhhcceEeecccc
Q 027067 82 QYKLQLNWLSLKDA 95 (229)
Q Consensus 82 ~~~~~~~~~~~~~~ 95 (229)
..++.+++++|.+.
T Consensus 217 ~r~rtI~vV~qsd~ 230 (450)
T PRK06002 217 NLKKAVAVVATSDE 230 (450)
T ss_pred hhCCeEEEEEcCCC
Confidence 12346788887543
No 460
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=99.04 E-value=2.6e-10 Score=93.17 Aligned_cols=80 Identities=18% Similarity=0.165 Sum_probs=55.6
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecc--cccCCCCCHHH
Q 027067 27 RHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLK--DAVKEKFTVLD 104 (229)
Q Consensus 27 ~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~tv~e 104 (229)
+=+.+.+++|+.++|+||||||||||+++|+|+++|+.|.|.+.+..-.... ....+.+..+. .......+..+
T Consensus 16 ~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 91 (186)
T cd01130 16 AYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLP----HPNWVRLVTRPGNVEGSGEVTMAD 91 (186)
T ss_pred HHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCC----CCCEEEEEEecCCCCCCCccCHHH
Confidence 3345678899999999999999999999999999999999999764321111 11223333332 23345567777
Q ss_pred hHHHHH
Q 027067 105 NVQWFE 110 (229)
Q Consensus 105 ~l~~~~ 110 (229)
.+....
T Consensus 92 ~l~~~l 97 (186)
T cd01130 92 LLRSAL 97 (186)
T ss_pred HHHHHh
Confidence 776543
No 461
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=99.03 E-value=8.6e-09 Score=101.99 Aligned_cols=55 Identities=20% Similarity=0.167 Sum_probs=50.5
Q ss_pred HHHHHhcCCCeEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067 149 LARLLAIDRPIWLLDEPSVAL-DYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 149 lAral~~~p~illlDEPt~~L-D~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~ 203 (229)
+++++..+|.++++|||+.+| |+..++.+.+.++.+++.|.+++++||+++++..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 677888999999999999999 6888999999999998889999999999998875
No 462
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=99.02 E-value=1.5e-09 Score=91.94 Aligned_cols=47 Identities=17% Similarity=0.258 Sum_probs=37.1
Q ss_pred HHhcCCCeEEEeCCCCC------CCHHHHHHHHHHHHHHHh-CCcEEEEEeCChh
Q 027067 152 LLAIDRPIWLLDEPSVA------LDYDGVRLLEYIIAEHRK-KGGIVIVATHLPI 199 (229)
Q Consensus 152 al~~~p~illlDEPt~~------LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~ 199 (229)
+...+|+++++| |+++ +|+.....+.+.+..+.+ .|.+||+++|...
T Consensus 107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 346799999999 8764 688877777777777654 5899999999754
No 463
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=99.01 E-value=5.4e-10 Score=102.13 Aligned_cols=90 Identities=12% Similarity=0.159 Sum_probs=66.4
Q ss_pred CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEE---EEcCEeCCCCch--hh---hhhhcceEeecc
Q 027067 22 AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEI---LWNGHDITQSGI--FH---QYKLQLNWLSLK 93 (229)
Q Consensus 22 ~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I---~~~g~~~~~~~~--~~---~~~~~~~~~~~~ 93 (229)
+..+++++ |++.+|++++|+|+||||||||+++|+|+.+++.+.+ -.++.++..... .. ..+..+++.+++
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 56799999 9999999999999999999999999999999886433 233333321100 00 123357888888
Q ss_pred cccCCCCCHHHhHHHHHHh
Q 027067 94 DAVKEKFTVLDNVQWFEVL 112 (229)
Q Consensus 94 ~~~~~~~tv~e~l~~~~~~ 112 (229)
...+..+++.++....+.+
T Consensus 221 ~s~~~rl~a~e~a~~iAEy 239 (434)
T PRK07196 221 ESPLMRIKATELCHAIATY 239 (434)
T ss_pred CChhhhHHHHHHHHHHHHH
Confidence 8888888998887665543
No 464
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=99.01 E-value=2.6e-09 Score=105.58 Aligned_cols=134 Identities=22% Similarity=0.296 Sum_probs=83.5
Q ss_pred eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCC-CCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCC
Q 027067 23 QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS-KPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFT 101 (229)
Q Consensus 23 ~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~-~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 101 (229)
..+=+|+++. ..+.++.|+|||.+||||+||.++-.. -..-|. |+|-... .+.
T Consensus 595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~----------------------~VPa~~a---~i~ 648 (854)
T PRK05399 595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIGS----------------------FVPAESA---RIG 648 (854)
T ss_pred ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcCC----------------------ceeccce---Eec
Confidence 3456677777 667899999999999999999986431 112221 1111110 011
Q ss_pred HHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhc--CCCeEEEeCC---CCCCCHHHHHH
Q 027067 102 VLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAI--DRPIWLLDEP---SVALDYDGVRL 176 (229)
Q Consensus 102 v~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~--~p~illlDEP---t~~LD~~~~~~ 176 (229)
+.+.+ +.++|- .+.-...+|.-+.....++.+|-. ++.++|+||| |+.+|.. ..
T Consensus 649 ~~d~I----------------~triga---~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~--ai 707 (854)
T PRK05399 649 IVDRI----------------FTRIGA---SDDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGL--SI 707 (854)
T ss_pred ccCee----------------eeccCc---ccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhH--HH
Confidence 11211 001111 122335677777778888887765 8999999999 8888843 34
Q ss_pred HHHHHHHHHhC-CcEEEEEeCChhhHHhh
Q 027067 177 LEYIIAEHRKK-GGIVIVATHLPIQIEDA 204 (229)
Q Consensus 177 l~~~l~~~~~~-g~tii~vtH~~~~~~~~ 204 (229)
...+++.+.+. +.++|++||+.+ +...
T Consensus 708 a~aile~l~~~~~~~~l~aTH~~e-l~~l 735 (854)
T PRK05399 708 AWAVAEYLHDKIGAKTLFATHYHE-LTEL 735 (854)
T ss_pred HHHHHHHHHhcCCceEEEEechHH-HHHH
Confidence 55566666655 588999999944 4443
No 465
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.00 E-value=2.6e-10 Score=93.80 Aligned_cols=113 Identities=12% Similarity=0.098 Sum_probs=68.0
Q ss_pred EEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhh-hhhhcceEeecccccCCCCCHHHhHHHHHHhcCcc
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFH-QYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQ 116 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~ 116 (229)
++||+||||||||||.++|++++ ..|.+.+.+.+--...... ........... ++. + . ..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~----~~~-~-~-----------~~ 61 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDSYYKDLSHEELEERKNNNYD----HPD-A-F-----------DF 61 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEecccccccccccHHHhccCCCC----CCC-c-c-----------cH
Confidence 58999999999999999999998 3455555444321100000 00000000000 000 0 0 01
Q ss_pred ccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q 027067 117 GNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYD 172 (229)
Q Consensus 117 ~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~ 172 (229)
....+.+..+...+..+.+..+.|.|++++..+ .+..++++|+|+|+.+.++.
T Consensus 62 ~~~~~~l~~l~~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~ 114 (198)
T cd02023 62 DLLISHLQDLKNGKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKE 114 (198)
T ss_pred HHHHHHHHHHHCCCCEeccccccccCcccCCce---ecCCCCEEEEechhhccchh
Confidence 122345555555556677888999999876655 56789999999999999863
No 466
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=99.00 E-value=9.2e-09 Score=101.30 Aligned_cols=52 Identities=21% Similarity=0.083 Sum_probs=46.4
Q ss_pred HHhcCCCeEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067 152 LLAIDRPIWLLDEPSVALD-YDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 152 al~~~p~illlDEPt~~LD-~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~ 203 (229)
.+..+|.++++|||...|| +...+.+.+.++..++.|..++++||+++++..
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~ 690 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDASK 690 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHh
Confidence 3456899999999999999 778889999999999889999999999988765
No 467
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.96 E-value=1.8e-09 Score=107.53 Aligned_cols=68 Identities=29% Similarity=0.301 Sum_probs=60.9
Q ss_pred CCCCCCChhHHHHHHHHHHHh------cC--CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhH
Q 027067 134 EKARMLSMGQRKRLQLARLLA------ID--RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQI 201 (229)
Q Consensus 134 ~~~~~LSgGqkqRv~lAral~------~~--p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~ 201 (229)
+.+.+|||||+-.++||-+|+ .+ -++++|||||..||+...+.+..++..+...+.+|++|||+.+..
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~ 886 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELK 886 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHH
Confidence 678999999999888887765 35 699999999999999999999999999988889999999997655
No 468
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.94 E-value=1.7e-09 Score=111.26 Aligned_cols=65 Identities=15% Similarity=0.057 Sum_probs=55.9
Q ss_pred hhcCCCCCCChhHHHHHH----HHHH--------HhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCh
Q 027067 131 LAKEKARMLSMGQRKRLQ----LARL--------LAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLP 198 (229)
Q Consensus 131 ~~~~~~~~LSgGqkqRv~----lAra--------l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~ 198 (229)
..++.++.||||||||++ +|++ +..+|++++|||||+++|+.++..+.+++..+ +.++||+||.+
T Consensus 1240 ~~~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1240 PLTHRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred chhccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence 345567999999999996 5755 55899999999999999999999999998877 78899999963
No 469
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.88 E-value=2.7e-08 Score=88.94 Aligned_cols=113 Identities=26% Similarity=0.326 Sum_probs=69.3
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHCCCC-CCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHHh
Q 027067 34 HDGGALVLTGTNGSGKSTFLRMLAGFSK-PSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVL 112 (229)
Q Consensus 34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~-p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~ 112 (229)
.++..+.|.||+||||||+++++.+.+. +..|.|..-+.++... .......+.|.
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~-----~~~~~~~i~q~------------------- 175 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV-----HRNKRSLINQR------------------- 175 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh-----ccCccceEEcc-------------------
Confidence 4688999999999999999999998765 4467766544332110 00000000000
Q ss_pred cCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEE
Q 027067 113 EGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVI 192 (229)
Q Consensus 113 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii 192 (229)
..+.. ..+ -.-+++++|-++|+++++||+. |.++.... ++ ....|.+|+
T Consensus 176 ------------evg~~--------~~~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~---l~-aa~tGh~v~ 224 (343)
T TIGR01420 176 ------------EVGLD--------TLS----FANALRAALREDPDVILIGEMR---DLETVELA---LT-AAETGHLVF 224 (343)
T ss_pred ------------ccCCC--------CcC----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHH---HH-HHHcCCcEE
Confidence 00100 001 1224677888999999999997 77765432 22 345689999
Q ss_pred EEeCChhhH
Q 027067 193 VATHLPIQI 201 (229)
Q Consensus 193 ~vtH~~~~~ 201 (229)
.+.|-.+..
T Consensus 225 ~T~Ha~~~~ 233 (343)
T TIGR01420 225 GTLHTNSAA 233 (343)
T ss_pred EEEcCCCHH
Confidence 999975443
No 470
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.83 E-value=8.8e-09 Score=98.57 Aligned_cols=110 Identities=17% Similarity=0.127 Sum_probs=74.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHCCCCCCcc--------EEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhH
Q 027067 35 DGGALVLTGTNGSGKSTFLRMLAGFSKPSAG--------EILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNV 106 (229)
Q Consensus 35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G--------~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l 106 (229)
..+.++|+||||+|||||++++.+..++..| -|.+++..+.. .. .... . .++. .+.+..
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~-d~-~~i~--------~-~llg--~~~~~~ 240 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRW-DP-REVT--------N-PLLG--SVHDPI 240 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccC-CH-HHHh--------H-HhcC--CccHHH
Confidence 4567999999999999999999998865444 36666544321 00 0000 0 0000 011111
Q ss_pred HHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 027067 107 QWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAE 183 (229)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~ 183 (229)
.......++.+|+.+.....+.++||| +|++|| +..||+..+..+...+++
T Consensus 241 ---------~~~a~~~l~~~gl~~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le~ 291 (615)
T TIGR02903 241 ---------YQGARRDLAETGVPEPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLED 291 (615)
T ss_pred ---------HHHHHHHHHHcCCCchhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHHhh
Confidence 012334577788888888899999999 999999 899999999998888865
No 471
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.81 E-value=4.7e-09 Score=85.27 Aligned_cols=68 Identities=19% Similarity=0.272 Sum_probs=45.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHH
Q 027067 35 DGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQW 108 (229)
Q Consensus 35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~ 108 (229)
+||+++|+|+||||||||+++|+|++.+ +.++|.++...... .....++.+++....+..++..++.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~~~~--r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPAKNI--DKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCHhHH--HHHhcCCCCCcccchHHHHHHHHHHH
Confidence 6999999999999999999999999887 57888877432111 11123344444343444556565554
No 472
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=98.79 E-value=1.6e-07 Score=79.66 Aligned_cols=50 Identities=24% Similarity=0.240 Sum_probs=36.2
Q ss_pred hcCCCeEEEeCCCCCCCHHHH-HHHHHHHHHHHh-CCcEEEEEeCChhhHHh
Q 027067 154 AIDRPIWLLDEPSVALDYDGV-RLLEYIIAEHRK-KGGIVIVATHLPIQIED 203 (229)
Q Consensus 154 ~~~p~illlDEPt~~LD~~~~-~~l~~~l~~~~~-~g~tii~vtH~~~~~~~ 203 (229)
+.+..++|+||+..|=++... .....+++.+.+ .+..+|++||+.+..+.
T Consensus 120 ~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~~ 171 (235)
T PF00488_consen 120 ATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAEL 171 (235)
T ss_dssp --TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGGH
T ss_pred cccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHHH
Confidence 346779999999999999754 455667777776 48889999999865443
No 473
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.79 E-value=2.2e-08 Score=76.14 Aligned_cols=56 Identities=18% Similarity=0.125 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCcEEEEEeCChhh
Q 027067 144 RKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK-----KGGIVIVATHLPIQ 200 (229)
Q Consensus 144 kqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-----~g~tii~vtH~~~~ 200 (229)
.+......+...++.++++||.-.. +......+...+..... .+..+|++|+....
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~ 132 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLL 132 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCcccc
Confidence 5666667777889999999997664 45555667777777543 46789999997653
No 474
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.79 E-value=8.2e-09 Score=94.43 Aligned_cols=63 Identities=17% Similarity=0.277 Sum_probs=56.8
Q ss_pred cEEEEeEEEEe-CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEe
Q 027067 10 RLLLKNVSCMR-NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHD 73 (229)
Q Consensus 10 ~l~l~~l~~~~-~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~ 73 (229)
.++.+.++..+ .+..+++++ +.+.+||+++|+|+||+|||||+++|+|+.+++.|.+.+.|+.
T Consensus 129 ~~~r~~v~~~l~tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeR 192 (433)
T PRK07594 129 AMVRQPITQPLMTGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER 192 (433)
T ss_pred ceeccCHhheeCCCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCC
Confidence 47788888777 578899999 9999999999999999999999999999999999988777754
No 475
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.77 E-value=6.4e-09 Score=96.95 Aligned_cols=62 Identities=23% Similarity=0.309 Sum_probs=57.8
Q ss_pred EEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeC
Q 027067 13 LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI 74 (229)
Q Consensus 13 l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~ 74 (229)
+.|++..||+..+++++++.+..|+.++|+||||||||||++.|.|+++|.+|++.+....+
T Consensus 187 ~~d~~~v~Gq~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i 248 (506)
T PRK09862 187 QHDLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAI 248 (506)
T ss_pred ccCeEEEECcHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchh
Confidence 46899999999999999999999999999999999999999999999999999998877655
No 476
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.71 E-value=1.7e-07 Score=92.49 Aligned_cols=51 Identities=27% Similarity=0.185 Sum_probs=45.0
Q ss_pred HhcCCCeEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067 153 LAIDRPIWLLDEPSVALD-YDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 153 l~~~p~illlDEPt~~LD-~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~ 203 (229)
+-.+|.++++|||+..|| +..++.+.+.++..++.|.+++++||+++++..
T Consensus 632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~ 683 (811)
T PRK13873 632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLADIDG 683 (811)
T ss_pred hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHhc
Confidence 345899999999999999 567889999999998889999999999987754
No 477
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.70 E-value=4.1e-08 Score=100.15 Aligned_cols=44 Identities=16% Similarity=0.245 Sum_probs=36.5
Q ss_pred eeEEEeCCcEEEEEcCCCccHHHHHHHHHCCC-CCCccEEEEcCE
Q 027067 29 VNISIHDGGALVLTGTNGSGKSTFLRMLAGFS-KPSAGEILWNGH 72 (229)
Q Consensus 29 vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~-~p~~G~I~~~g~ 72 (229)
++++.+.+++++|+|++|+|||||++++++.. ...+|.+++++.
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~ 244 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRA 244 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecc
Confidence 46778889999999999999999999996554 445799988753
No 478
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.70 E-value=2.8e-08 Score=88.02 Aligned_cols=52 Identities=23% Similarity=0.332 Sum_probs=47.2
Q ss_pred CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEe
Q 027067 21 NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHD 73 (229)
Q Consensus 21 ~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~ 73 (229)
.+.++++++ +.+.+|++++|+|+||+|||||+++|+|...|+.|.+..-|++
T Consensus 55 tGi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer 106 (326)
T cd01136 55 TGVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGER 106 (326)
T ss_pred CCcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecC
Confidence 457899999 9999999999999999999999999999999999888776654
No 479
>PRK08149 ATP synthase SpaL; Validated
Probab=98.69 E-value=3e-08 Score=90.67 Aligned_cols=55 Identities=20% Similarity=0.370 Sum_probs=49.8
Q ss_pred CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCc---cEEEEcCEeCCC
Q 027067 21 NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSA---GEILWNGHDITQ 76 (229)
Q Consensus 21 ~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~---G~I~~~g~~~~~ 76 (229)
.+.++++++ +++.+||+++|+|+||+|||||+++|++...++. |.|..+|+++..
T Consensus 137 tGi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e 194 (428)
T PRK08149 137 TGVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTE 194 (428)
T ss_pred CCcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHH
Confidence 456799999 9999999999999999999999999999999887 888888887653
No 480
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.66 E-value=5.8e-09 Score=87.60 Aligned_cols=39 Identities=28% Similarity=0.404 Sum_probs=30.3
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHH--CCCCCCccEEEEcC
Q 027067 32 SIHDGGALVLTGTNGSGKSTFLRMLA--GFSKPSAGEILWNG 71 (229)
Q Consensus 32 ~i~~Ge~~~iiG~NGsGKSTLl~~i~--Gl~~p~~G~I~~~g 71 (229)
-+++|+++.|.|++|||||||...++ ++ ++..+-+++..
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~-~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGL-RDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHH-hcCCeEEEEEc
Confidence 47899999999999999999987554 44 44555566654
No 481
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.65 E-value=5.1e-08 Score=89.50 Aligned_cols=49 Identities=20% Similarity=0.334 Sum_probs=41.9
Q ss_pred CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC-CccEEEEcC
Q 027067 22 AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP-SAGEILWNG 71 (229)
Q Consensus 22 ~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-~~G~I~~~g 71 (229)
+..+++++ |.+.+|++++|+|+||||||||+++|+|+.++ +.|.|.+.|
T Consensus 151 Gi~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liG 200 (442)
T PRK06315 151 GVRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIG 200 (442)
T ss_pred eEEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEEC
Confidence 45689988 99999999999999999999999999999854 446666644
No 482
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.64 E-value=4.1e-08 Score=66.01 Aligned_cols=39 Identities=31% Similarity=0.452 Sum_probs=31.0
Q ss_pred eeeeeEEEeC-CcEEEEEcCCCccHHHHHHHHHCCCCCCc
Q 027067 26 LRHVNISIHD-GGALVLTGTNGSGKSTFLRMLAGFSKPSA 64 (229)
Q Consensus 26 L~~vsl~i~~-Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~ 64 (229)
+++.++++.+ |+++.|+||||||||||+.+|.=++-+..
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 3456667775 57999999999999999999987766543
No 483
>PRK14079 recF recombination protein F; Provisional
Probab=98.63 E-value=4.3e-08 Score=87.86 Aligned_cols=61 Identities=26% Similarity=0.294 Sum_probs=49.5
Q ss_pred CCCChhHHHHHHHHHHHh---------cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhh
Q 027067 137 RMLSMGQRKRLQLARLLA---------IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQ 200 (229)
Q Consensus 137 ~~LSgGqkqRv~lAral~---------~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~ 200 (229)
..+|+||++++++|..|+ .+|+++|||||+++||...+..+.+.+... ..++|-+|+.++.
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~---~q~~it~t~~~~~ 331 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL---PQAIVAGTEAPPG 331 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC---CcEEEEcCCCCCC
Confidence 468999999999999999 899999999999999999999988887543 2345555544333
No 484
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.63 E-value=5.5e-08 Score=79.37 Aligned_cols=38 Identities=32% Similarity=0.455 Sum_probs=33.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCC
Q 027067 36 GGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQ 76 (229)
Q Consensus 36 Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~ 76 (229)
|++++|+||||||||||+++|++...+ .+.+.+..+..
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~ 39 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITR 39 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCC
Confidence 789999999999999999999999876 57777776654
No 485
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.62 E-value=5.1e-08 Score=85.13 Aligned_cols=74 Identities=20% Similarity=0.194 Sum_probs=49.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHCCCC--CCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHHh
Q 027067 36 GGALVLTGTNGSGKSTFLRMLAGFSK--PSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVL 112 (229)
Q Consensus 36 Ge~~~iiG~NGsGKSTLl~~i~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~ 112 (229)
-.++||.|+||||||||+++|.+++. |++|+|.+-+.|-..... ......++. +...+.+.+++.+.+.+...+
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~--~~l~~~g~~-~~~g~P~s~D~~~l~~~L~~L 137 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPN--QVLKERNLM-KKKGFPESYDMHRLVKFLSDL 137 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccH--HHHHHcCCc-cccCCChhccHHHHHHHHHHH
Confidence 46999999999999999999999987 778888775555322211 112223432 444556667777766654433
No 486
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.61 E-value=6.4e-08 Score=81.60 Aligned_cols=72 Identities=17% Similarity=0.213 Sum_probs=46.8
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHCCCCCCccE----EEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHH
Q 027067 34 HDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGE----ILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWF 109 (229)
Q Consensus 34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~----I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~ 109 (229)
.+..++||.||||||||||+++|++++++++|. |.+++.... .......+++.+. .....+++.+...+.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~-----~~~~~~~g~~~~~-~~~~~~d~~~~~~~l 104 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLD-----NAVLDAHGLRPRK-GAPETFDVAGLAALL 104 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCC-----HHHHHhccccccc-CCCCCCCHHHHHHHH
Confidence 456799999999999999999999999999998 444442221 1122234554432 233455666655544
Q ss_pred HH
Q 027067 110 EV 111 (229)
Q Consensus 110 ~~ 111 (229)
..
T Consensus 105 ~~ 106 (229)
T PRK09270 105 RR 106 (229)
T ss_pred HH
Confidence 33
No 487
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.61 E-value=5.8e-08 Score=89.14 Aligned_cols=53 Identities=21% Similarity=0.299 Sum_probs=48.6
Q ss_pred CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeC
Q 027067 21 NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI 74 (229)
Q Consensus 21 ~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~ 74 (229)
.+..+++++ +.+.+|++++|+|+||+|||||+++|+|...++.|.|.+.|+.-
T Consensus 149 TGi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer~ 201 (441)
T PRK09099 149 TGVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGERG 201 (441)
T ss_pred CCceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccCh
Confidence 456799999 99999999999999999999999999999999999998888543
No 488
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.59 E-value=3.5e-08 Score=80.59 Aligned_cols=85 Identities=13% Similarity=0.129 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhh--HHhhhccCCCCCCCCcchH
Q 027067 142 GQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQ--IEDAMNLRLPPRFPRRMTL 219 (229)
Q Consensus 142 GqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~--~~~~~~~~~~~~~~~~~~~ 219 (229)
|+-+|..||.++..+|+.+..+| +.+||...+.+.+.+.+..+.|.+||+.+|.+.+ +...+|.-+-=..+....+
T Consensus 61 g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~~~~~~ 138 (188)
T TIGR00152 61 GELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVSPQLQL 138 (188)
T ss_pred CCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECCHHHHH
Confidence 88999999999999999988887 7899999999998888876666799999998854 5555543332223333344
Q ss_pred HhhhhhcCC
Q 027067 220 VDMLDRADI 228 (229)
Q Consensus 220 ~~~~~~~~~ 228 (229)
..++.|.++
T Consensus 139 ~Rl~~R~~~ 147 (188)
T TIGR00152 139 ERLMQRDNL 147 (188)
T ss_pred HHHHHcCCC
Confidence 455544443
No 489
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.58 E-value=1e-07 Score=87.01 Aligned_cols=62 Identities=18% Similarity=0.270 Sum_probs=52.0
Q ss_pred EEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEe
Q 027067 11 LLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHD 73 (229)
Q Consensus 11 l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~ 73 (229)
++-+.++..|. +..+++.+ |.+.+|++++|+|+||+|||||+++|++..+|+.+.+...|+.
T Consensus 112 ~~R~~~~~~~~tGi~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~~vi~~iGer 174 (411)
T TIGR03496 112 LKRAPIDEPLDVGVRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADVVVVGLIGER 174 (411)
T ss_pred HhccCcceEeeeeEEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEEecC
Confidence 45555665563 57889999 9999999999999999999999999999999988877666654
No 490
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.57 E-value=6e-08 Score=88.90 Aligned_cols=51 Identities=22% Similarity=0.304 Sum_probs=47.1
Q ss_pred CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEe
Q 027067 22 AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHD 73 (229)
Q Consensus 22 ~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~ 73 (229)
+..+++++ |.+.+|++++|+|+||+|||||+++|+|..+|+.|.+...|+.
T Consensus 132 G~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~ 182 (422)
T TIGR02546 132 GVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGER 182 (422)
T ss_pred Cceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccC
Confidence 56799999 9999999999999999999999999999999999998886554
No 491
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.57 E-value=9.7e-08 Score=69.16 Aligned_cols=51 Identities=22% Similarity=0.262 Sum_probs=38.7
Q ss_pred cCCCCCCChhHHH-HHHHHHHH------hc------CCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 027067 133 KEKARMLSMGQRK-RLQLARLL------AI------DRPIWLLDEPSVALDYDGVRLLEYIIAE 183 (229)
Q Consensus 133 ~~~~~~LSgGqkq-Rv~lAral------~~------~p~illlDEPt~~LD~~~~~~l~~~l~~ 183 (229)
.+....+|||||| .+.+|.++ .. .|++++|||||++||....+.+.+++++
T Consensus 27 ~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 27 SRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred eccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 5678899999994 44444333 23 3799999999999999999998888753
No 492
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.57 E-value=4.7e-08 Score=80.54 Aligned_cols=28 Identities=36% Similarity=0.564 Sum_probs=26.3
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067 34 HDGGALVLTGTNGSGKSTFLRMLAGFSK 61 (229)
Q Consensus 34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~ 61 (229)
++|++++|+||||||||||+++|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999975
No 493
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.56 E-value=9e-08 Score=87.43 Aligned_cols=54 Identities=24% Similarity=0.289 Sum_probs=47.8
Q ss_pred CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCC
Q 027067 21 NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDIT 75 (229)
Q Consensus 21 ~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~ 75 (229)
.+..+++ .+|.+.+|++++|+|+||+|||||+++|++..+|+.|.|.+.|+.-.
T Consensus 126 tGi~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGer~~ 179 (418)
T TIGR03498 126 TGVRVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGERGR 179 (418)
T ss_pred CccEEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEeeech
Confidence 3556665 69999999999999999999999999999999999999988887643
No 494
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.55 E-value=7.1e-08 Score=85.37 Aligned_cols=75 Identities=19% Similarity=0.251 Sum_probs=53.5
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhh-----hhhhcceEeecccccCCCCCHHHhHHH
Q 027067 34 HDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFH-----QYKLQLNWLSLKDAVKEKFTVLDNVQW 108 (229)
Q Consensus 34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~tv~e~l~~ 108 (229)
.+|++++++|||||||||++..|++.+.+..++|.+.+.|..+..... ..+.++.++++.....+..++++++..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 578999999999999999999999999988889999887764321111 123456777665444444455666543
No 495
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.55 E-value=9.1e-08 Score=88.02 Aligned_cols=53 Identities=21% Similarity=0.304 Sum_probs=47.2
Q ss_pred CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeC
Q 027067 21 NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI 74 (229)
Q Consensus 21 ~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~ 74 (229)
.+..+++++ +.+.+|++++|+|+||+|||||+++|+|..+++.|.+...|+.-
T Consensus 149 TGi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~ 201 (440)
T TIGR01026 149 TGVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERG 201 (440)
T ss_pred ceeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecc
Confidence 356789999 99999999999999999999999999999999988777766543
No 496
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.55 E-value=1.3e-07 Score=86.33 Aligned_cols=53 Identities=25% Similarity=0.312 Sum_probs=48.6
Q ss_pred CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeC
Q 027067 21 NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI 74 (229)
Q Consensus 21 ~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~ 74 (229)
.+.++++++ +.+.+|++++|+|+||+|||||+++|++..+++.|.|.+.|+..
T Consensus 123 tGi~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger~ 175 (413)
T TIGR03497 123 TGIKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGERG 175 (413)
T ss_pred ccceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccch
Confidence 456799999 99999999999999999999999999999999999988888654
No 497
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.54 E-value=1.8e-07 Score=84.66 Aligned_cols=54 Identities=19% Similarity=0.260 Sum_probs=48.6
Q ss_pred CcEEEEeEEEEeCC-eeeee-----------eeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC
Q 027067 9 PRLLLKNVSCMRNA-QQILR-----------HVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP 62 (229)
Q Consensus 9 ~~l~l~~l~~~~~~-~~iL~-----------~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p 62 (229)
..+.++||++.|.+ +.+|+ |+++.|.+|+.++|+||.|||||||++.|+..+..
T Consensus 129 ~ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 129 NRVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred CCeEEEEeeecCCCccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhcc
Confidence 35999999999965 56887 99999999999999999999999999999988653
No 498
>PRK09183 transposase/IS protein; Provisional
Probab=98.51 E-value=9e-07 Score=76.17 Aligned_cols=36 Identities=28% Similarity=0.377 Sum_probs=31.7
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067 25 ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK 61 (229)
Q Consensus 25 iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~ 61 (229)
.|.+++| +++|+.+.|+||+|+|||+|..+|+....
T Consensus 92 ~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 92 SLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred HHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 5778888 99999999999999999999999966543
No 499
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.49 E-value=4e-07 Score=73.49 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=28.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEE
Q 027067 36 GGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW 69 (229)
Q Consensus 36 Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~ 69 (229)
|++++|+||||||||||++.|++.+.+. |.+.+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~ 33 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHF 33 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEE
Confidence 6789999999999999999999987654 65555
No 500
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.49 E-value=8e-08 Score=79.71 Aligned_cols=29 Identities=28% Similarity=0.306 Sum_probs=27.2
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHCCCCC
Q 027067 34 HDGGALVLTGTNGSGKSTFLRMLAGFSKP 62 (229)
Q Consensus 34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p 62 (229)
++|++++|+||||||||||++.|++++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57999999999999999999999999876
Done!