Query 027067
Match_columns 229
No_of_seqs 301 out of 1144
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 06:54:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027067.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027067hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pcj_A ABC transporter, lipopr 100.0 1.3E-56 4.5E-61 376.1 24.2 197 9-206 3-207 (224)
2 3tui_C Methionine import ATP-b 100.0 2.1E-56 7E-61 398.2 25.9 200 7-206 21-232 (366)
3 1g6h_A High-affinity branched- 100.0 7.4E-57 2.5E-61 384.8 21.8 198 9-206 6-221 (257)
4 2olj_A Amino acid ABC transpor 100.0 2.5E-56 8.6E-61 382.8 24.6 198 9-206 23-227 (263)
5 1vpl_A ABC transporter, ATP-bi 100.0 6.2E-56 2.1E-60 379.0 25.7 196 9-206 14-214 (256)
6 1ji0_A ABC transporter; ATP bi 100.0 3.3E-56 1.1E-60 377.3 23.7 198 9-206 5-207 (240)
7 1b0u_A Histidine permease; ABC 100.0 2.8E-56 9.7E-61 382.3 23.6 198 9-206 5-221 (262)
8 3tif_A Uncharacterized ABC tra 100.0 7.2E-56 2.5E-60 374.2 23.8 196 10-206 1-213 (235)
9 3gfo_A Cobalt import ATP-bindi 100.0 6.9E-56 2.4E-60 382.3 23.4 198 9-206 6-212 (275)
10 3rlf_A Maltose/maltodextrin im 100.0 9.9E-56 3.4E-60 395.9 24.9 194 10-206 3-202 (381)
11 4g1u_C Hemin import ATP-bindin 100.0 1.4E-55 4.7E-60 378.9 24.6 199 7-206 8-216 (266)
12 3fvq_A Fe(3+) IONS import ATP- 100.0 9.6E-56 3.3E-60 393.4 23.5 197 10-206 4-207 (359)
13 1z47_A CYSA, putative ABC-tran 100.0 4.7E-55 1.6E-59 388.8 24.1 196 8-206 12-214 (355)
14 1sgw_A Putative ABC transporte 100.0 1.7E-55 5.7E-60 367.2 19.8 190 9-206 9-201 (214)
15 2yyz_A Sugar ABC transporter, 100.0 8.7E-55 3E-59 387.7 24.8 194 10-206 3-202 (359)
16 3d31_A Sulfate/molybdate ABC t 100.0 8.8E-55 3E-59 386.4 24.4 193 10-206 1-196 (348)
17 2it1_A 362AA long hypothetical 100.0 1.2E-54 4E-59 387.3 24.3 194 10-206 3-202 (362)
18 1g29_1 MALK, maltose transport 100.0 2.2E-54 7.5E-59 387.0 24.7 194 10-206 3-208 (372)
19 1v43_A Sugar-binding transport 100.0 2.3E-54 8E-59 386.6 23.5 194 10-206 11-210 (372)
20 2d2e_A SUFC protein; ABC-ATPas 100.0 2E-54 6.8E-59 368.4 21.6 195 10-204 3-209 (250)
21 2ihy_A ABC transporter, ATP-bi 100.0 6.9E-55 2.4E-59 376.8 18.9 199 7-206 18-231 (279)
22 1oxx_K GLCV, glucose, ABC tran 100.0 1.2E-54 4E-59 386.5 20.5 197 10-206 3-209 (353)
23 2yz2_A Putative ABC transporte 100.0 4.3E-54 1.5E-58 369.5 22.5 193 10-206 2-206 (266)
24 2onk_A Molybdate/tungstate ABC 100.0 2.1E-54 7.3E-59 366.3 20.0 191 10-206 1-195 (240)
25 2zu0_C Probable ATP-dependent 100.0 8.4E-54 2.9E-58 367.9 21.0 198 7-204 17-230 (267)
26 2ff7_A Alpha-hemolysin translo 100.0 6.2E-53 2.1E-57 358.7 23.0 190 10-203 7-209 (247)
27 2nq2_C Hypothetical ABC transp 100.0 5.1E-53 1.7E-57 360.4 21.5 184 10-207 4-198 (253)
28 2ixe_A Antigen peptide transpo 100.0 3.7E-53 1.2E-57 364.7 19.5 196 8-206 14-224 (271)
29 2qi9_C Vitamin B12 import ATP- 100.0 4.9E-53 1.7E-57 359.8 19.5 191 10-206 4-201 (249)
30 1mv5_A LMRA, multidrug resista 100.0 3.1E-53 1.1E-57 359.6 16.0 193 10-206 1-205 (243)
31 3nh6_A ATP-binding cassette SU 100.0 9E-52 3.1E-56 361.4 21.6 191 9-203 52-254 (306)
32 2pjz_A Hypothetical protein ST 100.0 1E-51 3.5E-56 354.2 20.7 186 10-206 1-193 (263)
33 2ghi_A Transport protein; mult 100.0 3.4E-51 1.2E-55 350.4 19.9 190 9-203 16-219 (260)
34 2pze_A Cystic fibrosis transme 100.0 1E-49 3.6E-54 335.2 18.7 179 9-206 5-197 (229)
35 3gd7_A Fusion complex of cysti 100.0 4.1E-50 1.4E-54 361.1 16.0 189 9-203 18-219 (390)
36 2cbz_A Multidrug resistance-as 100.0 1.6E-49 5.6E-54 335.7 16.3 178 10-206 3-196 (237)
37 3b60_A Lipid A export ATP-bind 100.0 2.7E-48 9.2E-53 365.7 21.4 192 9-203 340-544 (582)
38 3b5x_A Lipid A export ATP-bind 100.0 2.6E-48 8.8E-53 365.8 21.1 194 9-206 340-546 (582)
39 2yl4_A ATP-binding cassette SU 100.0 8.8E-48 3E-52 363.0 23.1 190 11-203 342-547 (595)
40 4a82_A Cystic fibrosis transme 100.0 2.4E-47 8.1E-52 359.0 19.9 191 9-203 338-541 (578)
41 3qf4_B Uncharacterized ABC tra 100.0 2.1E-47 7E-52 360.8 18.5 191 9-203 353-555 (598)
42 3qf4_A ABC transporter, ATP-bi 100.0 3E-47 1E-51 358.9 18.8 191 9-203 340-543 (587)
43 2bbs_A Cystic fibrosis transme 100.0 9.5E-47 3.2E-51 327.5 15.1 174 9-203 39-224 (290)
44 1yqt_A RNAse L inhibitor; ATP- 100.0 1.6E-44 5.5E-49 337.2 18.9 184 8-206 285-470 (538)
45 3bk7_A ABC transporter ATP-bin 100.0 2.3E-44 8E-49 340.0 19.9 184 8-206 355-540 (607)
46 3ozx_A RNAse L inhibitor; ATP 100.0 1.8E-44 6.2E-49 336.6 17.7 185 8-206 267-454 (538)
47 4f4c_A Multidrug resistance pr 100.0 2.5E-44 8.6E-49 364.4 16.3 193 9-204 1075-1282(1321)
48 3g5u_A MCG1178, multidrug resi 100.0 2.5E-43 8.6E-48 356.3 21.5 191 9-203 386-590 (1284)
49 3bk7_A ABC transporter ATP-bin 100.0 4.6E-44 1.6E-48 337.9 14.3 192 10-206 83-296 (607)
50 1yqt_A RNAse L inhibitor; ATP- 100.0 5.3E-44 1.8E-48 333.7 14.0 191 11-206 21-226 (538)
51 3g5u_A MCG1178, multidrug resi 100.0 3E-43 1E-47 355.7 17.2 192 9-203 1029-1235(1284)
52 4f4c_A Multidrug resistance pr 100.0 6.8E-43 2.3E-47 353.9 19.5 191 10-204 415-619 (1321)
53 3j16_B RLI1P; ribosome recycli 100.0 1.1E-40 3.6E-45 314.8 15.8 179 14-206 350-536 (608)
54 2iw3_A Elongation factor 3A; a 100.0 2.2E-40 7.5E-45 324.3 16.7 196 8-206 669-966 (986)
55 2iw3_A Elongation factor 3A; a 100.0 1.4E-39 4.8E-44 318.6 20.3 178 9-206 434-613 (986)
56 3ux8_A Excinuclease ABC, A sub 100.0 4.8E-40 1.6E-44 314.0 14.3 180 21-206 29-271 (670)
57 3j16_B RLI1P; ribosome recycli 100.0 1.1E-39 3.8E-44 307.9 12.3 187 15-206 82-289 (608)
58 3ozx_A RNAse L inhibitor; ATP 100.0 2.3E-39 7.9E-44 302.2 12.0 183 15-206 4-205 (538)
59 3ux8_A Excinuclease ABC, A sub 100.0 4.2E-37 1.5E-41 293.6 13.2 182 22-206 334-613 (670)
60 2vf7_A UVRA2, excinuclease ABC 100.0 4.1E-35 1.4E-39 284.3 13.4 192 8-206 500-800 (842)
61 2npi_A Protein CLP1; CLP1-PCF1 100.0 2.9E-38 9.9E-43 289.7 -12.3 176 8-206 116-312 (460)
62 2r6f_A Excinuclease ABC subuni 100.0 2.6E-34 8.9E-39 280.0 13.7 191 9-206 628-915 (972)
63 4aby_A DNA repair protein RECN 100.0 6.8E-34 2.3E-38 256.2 13.4 181 22-206 47-363 (415)
64 2ygr_A Uvrabc system protein A 100.0 1.2E-33 4.2E-38 276.0 12.8 191 9-206 646-933 (993)
65 3pih_A Uvrabc system protein A 100.0 1.8E-32 6.3E-37 267.7 18.3 188 10-203 589-873 (916)
66 3b85_A Phosphate starvation-in 100.0 5.2E-36 1.8E-40 248.4 -10.5 150 18-204 8-164 (208)
67 4gp7_A Metallophosphoesterase; 100.0 3E-33 1E-37 224.3 3.9 148 28-204 1-165 (171)
68 1tq4_A IIGP1, interferon-induc 100.0 3.6E-33 1.2E-37 252.5 -6.0 166 23-205 36-244 (413)
69 1e69_A Chromosome segregation 100.0 2.6E-30 8.7E-35 226.8 10.0 73 132-206 213-289 (322)
70 3qf7_A RAD50; ABC-ATPase, ATPa 100.0 6.5E-29 2.2E-33 221.7 16.5 69 133-201 274-348 (365)
71 1ye8_A Protein THEP1, hypothet 100.0 5.4E-30 1.8E-34 207.3 1.4 141 38-207 2-152 (178)
72 3b9q_A Chloroplast SRP recepto 99.9 4.1E-30 1.4E-34 224.1 -2.5 158 26-197 90-256 (302)
73 1znw_A Guanylate kinase, GMP k 99.9 8.8E-31 3E-35 215.6 -10.6 167 23-207 9-197 (207)
74 1z6g_A Guanylate kinase; struc 99.9 3.7E-31 1.3E-35 220.1 -13.1 177 22-206 9-202 (218)
75 2og2_A Putative signal recogni 99.9 6.8E-29 2.3E-33 220.9 -1.3 157 27-197 148-313 (359)
76 3sop_A Neuronal-specific septi 99.9 1.2E-29 4E-34 218.0 -7.2 150 38-201 4-153 (270)
77 2pt7_A CAG-ALFA; ATPase, prote 99.9 1.3E-27 4.6E-32 210.6 -0.1 122 25-205 160-281 (330)
78 2o8b_B DNA mismatch repair pro 99.9 2E-26 7E-31 228.0 6.5 158 8-207 748-921 (1022)
79 3aez_A Pantothenate kinase; tr 99.9 1E-29 3.5E-34 222.5 -15.2 163 9-201 42-231 (312)
80 2dpy_A FLII, flagellum-specifi 99.9 2.8E-28 9.5E-33 222.3 -7.1 171 9-199 130-318 (438)
81 1tf7_A KAIC; homohexamer, hexa 99.9 2.6E-28 9E-33 227.0 -9.9 171 8-201 10-188 (525)
82 2v9p_A Replication protein E1; 99.9 9.2E-30 3.1E-34 221.9 -18.5 132 10-178 101-233 (305)
83 3qkt_A DNA double-strand break 99.9 2.8E-24 9.5E-29 189.7 14.6 74 132-206 242-321 (339)
84 2jeo_A Uridine-cytidine kinase 99.9 2.8E-26 9.6E-31 193.4 -0.9 157 20-205 9-172 (245)
85 2qnr_A Septin-2, protein NEDD5 99.9 2.1E-26 7.1E-31 200.4 -5.5 164 14-199 2-168 (301)
86 1tf7_A KAIC; homohexamer, hexa 99.9 6E-25 2.1E-29 204.3 3.7 153 10-198 257-417 (525)
87 4ad8_A DNA repair protein RECN 99.9 9.8E-24 3.4E-28 195.8 11.7 71 134-206 392-465 (517)
88 2obl_A ESCN; ATPase, hydrolase 99.9 1.4E-25 4.8E-30 198.9 -0.7 171 9-199 44-229 (347)
89 2eyu_A Twitching motility prot 99.9 9.2E-25 3.2E-29 186.6 1.7 134 10-205 5-139 (261)
90 3thx_B DNA mismatch repair pro 99.9 6.8E-24 2.3E-28 207.6 6.7 151 10-202 640-800 (918)
91 2ehv_A Hypothetical protein PH 99.9 2.3E-24 7.7E-29 180.1 2.7 172 10-201 6-185 (251)
92 1cr0_A DNA primase/helicase; R 99.9 7.4E-24 2.5E-28 182.8 5.7 166 22-198 21-197 (296)
93 1ewq_A DNA mismatch repair pro 99.9 5.4E-24 1.9E-28 205.2 4.4 144 9-202 549-702 (765)
94 1rj9_A FTSY, signal recognitio 99.9 2.1E-24 7.2E-29 188.2 0.1 151 35-199 101-259 (304)
95 2o5v_A DNA replication and rep 99.9 1.3E-22 4.5E-27 180.5 10.4 62 133-197 259-330 (359)
96 1w1w_A Structural maintenance 99.9 5.4E-22 1.9E-26 180.0 12.5 67 136-202 331-401 (430)
97 3thx_A DNA mismatch repair pro 99.9 7.6E-22 2.6E-26 193.6 14.3 146 9-206 630-792 (934)
98 1pui_A ENGB, probable GTP-bind 99.9 2.1E-24 7E-29 176.0 -5.3 176 10-190 3-202 (210)
99 3szr_A Interferon-induced GTP- 99.9 2.1E-24 7.3E-29 203.9 -7.3 168 9-201 9-199 (608)
100 3pih_A Uvrabc system protein A 99.9 1.8E-22 6.1E-27 197.4 5.0 146 51-203 383-531 (916)
101 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 2E-21 6.9E-26 152.5 8.4 74 132-206 51-130 (148)
102 3asz_A Uridine kinase; cytidin 99.8 9.3E-25 3.2E-29 179.1 -11.2 143 33-198 3-161 (211)
103 4a74_A DNA repair and recombin 99.8 2.1E-22 7.1E-27 166.2 1.6 140 32-206 21-192 (231)
104 2i3b_A HCR-ntpase, human cance 99.8 2.2E-23 7.5E-28 170.0 -6.1 147 36-206 1-159 (189)
105 1nlf_A Regulatory protein REPA 99.8 1.1E-20 3.9E-25 161.7 9.6 154 32-202 26-185 (279)
106 1wb9_A DNA mismatch repair pro 99.8 4.9E-21 1.7E-25 185.6 6.9 151 9-202 576-734 (800)
107 2w0m_A SSO2452; RECA, SSPF, un 99.8 1E-21 3.5E-26 161.8 1.5 155 22-198 8-168 (235)
108 2qag_C Septin-7; cell cycle, c 99.8 2.5E-22 8.5E-27 181.9 -2.7 167 8-200 9-179 (418)
109 2r6f_A Excinuclease ABC subuni 99.8 7.8E-21 2.7E-25 185.5 7.6 106 98-203 450-571 (972)
110 2vf7_A UVRA2, excinuclease ABC 99.8 5.9E-21 2E-25 185.4 5.0 157 44-203 270-446 (842)
111 3jvv_A Twitching mobility prot 99.8 2E-20 7E-25 166.2 7.5 135 15-205 93-237 (356)
112 1pzn_A RAD51, DNA repair and r 99.8 7.1E-21 2.4E-25 168.7 3.9 145 24-202 118-290 (349)
113 1zp6_A Hypothetical protein AT 99.8 1.2E-21 4.2E-26 157.8 -4.9 149 32-195 5-158 (191)
114 2ygr_A Uvrabc system protein A 99.8 1.6E-19 5.5E-24 176.8 8.5 83 121-203 503-588 (993)
115 1s96_A Guanylate kinase, GMP k 99.8 9.9E-21 3.4E-25 157.6 -0.5 131 31-205 11-147 (219)
116 2qag_B Septin-6, protein NEDD5 99.8 3.7E-21 1.3E-25 174.2 -4.2 175 10-198 16-219 (427)
117 1lw7_A Transcriptional regulat 99.8 3.3E-22 1.1E-26 177.9 -12.6 151 25-197 157-328 (365)
118 1nij_A Hypothetical protein YJ 99.8 5.2E-22 1.8E-26 173.8 -11.6 159 37-208 5-199 (318)
119 2bbw_A Adenylate kinase 4, AK4 99.8 2.7E-21 9.1E-26 162.7 -7.5 139 35-185 26-197 (246)
120 3e70_C DPA, signal recognition 99.7 3.6E-19 1.2E-23 156.6 2.6 148 33-198 126-279 (328)
121 1htw_A HI0065; nucleotide-bind 99.7 7.6E-21 2.6E-25 150.8 -8.6 88 13-108 10-97 (158)
122 2qm8_A GTPase/ATPase; G protei 99.7 1.7E-21 5.8E-26 172.0 -13.9 172 10-185 29-259 (337)
123 2ewv_A Twitching motility prot 99.7 1.8E-18 6.3E-23 154.4 5.1 123 25-205 127-250 (372)
124 2yhs_A FTSY, cell division pro 99.7 1.8E-19 6.3E-24 165.4 -3.5 157 26-196 283-447 (503)
125 2cvh_A DNA repair and recombin 99.7 3.8E-17 1.3E-21 133.7 9.4 138 25-200 8-158 (220)
126 2gza_A Type IV secretion syste 99.7 1.7E-18 5.8E-23 154.0 1.2 141 12-204 137-292 (361)
127 1p9r_A General secretion pathw 99.7 1.3E-20 4.4E-25 170.7 -12.7 146 10-161 143-314 (418)
128 3kta_B Chromosome segregation 99.7 3.9E-17 1.3E-21 131.2 8.9 69 132-201 58-130 (173)
129 2rcn_A Probable GTPase ENGC; Y 99.7 3.5E-18 1.2E-22 151.7 1.6 139 25-185 205-345 (358)
130 3ec2_A DNA replication protein 99.7 1.2E-17 4.2E-22 133.5 4.6 111 30-198 32-143 (180)
131 2bdt_A BH3686; alpha-beta prot 99.7 6.2E-21 2.1E-25 153.8 -15.0 155 36-206 2-165 (189)
132 2kjq_A DNAA-related protein; s 99.7 5.8E-17 2E-21 126.9 5.9 92 25-197 30-124 (149)
133 1n0w_A DNA repair protein RAD5 99.7 2.9E-16 9.9E-21 130.3 10.5 137 32-203 20-179 (243)
134 2f1r_A Molybdopterin-guanine d 99.7 3.8E-19 1.3E-23 142.7 -7.2 140 37-189 3-164 (171)
135 1udx_A The GTP-binding protein 99.7 6.3E-18 2.2E-22 153.0 -0.9 156 26-203 147-314 (416)
136 2oap_1 GSPE-2, type II secreti 99.6 5.7E-20 1.9E-24 170.4 -15.8 169 23-207 247-459 (511)
137 2yv5_A YJEQ protein; hydrolase 99.6 3.2E-17 1.1E-21 142.4 0.5 116 32-151 161-300 (302)
138 1sxj_E Activator 1 40 kDa subu 99.6 1.1E-15 3.9E-20 133.8 7.8 140 38-202 38-178 (354)
139 1sq5_A Pantothenate kinase; P- 99.6 3.1E-18 1.1E-22 149.1 -8.9 139 9-170 36-198 (308)
140 2x8a_A Nuclear valosin-contain 99.6 5.6E-19 1.9E-23 151.5 -16.4 133 21-167 31-164 (274)
141 1u0l_A Probable GTPase ENGC; p 99.6 1.4E-16 4.8E-21 138.2 -1.8 109 31-141 164-294 (301)
142 3lda_A DNA repair protein RAD5 99.6 3.4E-15 1.2E-19 134.4 7.1 133 32-200 174-330 (400)
143 3auy_A DNA double-strand break 99.5 8.5E-15 2.9E-19 130.3 8.1 71 134-206 276-353 (371)
144 1in4_A RUVB, holliday junction 99.5 8.6E-19 2.9E-23 154.0 -17.6 172 9-206 17-210 (334)
145 1odf_A YGR205W, hypothetical 3 99.5 2.9E-16 1E-20 135.8 -4.1 121 34-172 29-168 (290)
146 1ls1_A Signal recognition part 99.5 1.5E-14 5.1E-19 125.2 5.0 142 11-195 77-219 (295)
147 1lvg_A Guanylate kinase, GMP k 99.5 3.3E-17 1.1E-21 133.8 -11.2 152 34-203 2-179 (198)
148 1t9h_A YLOQ, probable GTPase E 99.5 1.6E-15 5.6E-20 132.0 -1.5 113 31-146 168-303 (307)
149 3c8u_A Fructokinase; YP_612366 99.5 1.9E-16 6.6E-21 129.8 -7.9 114 33-166 19-140 (208)
150 1ni3_A YCHF GTPase, YCHF GTP-b 99.5 1.9E-16 6.4E-21 142.2 -8.7 155 32-206 16-190 (392)
151 1vma_A Cell division protein F 99.5 3.3E-14 1.1E-18 123.8 5.1 99 28-167 96-197 (306)
152 3lnc_A Guanylate kinase, GMP k 99.4 1.1E-16 3.8E-21 133.0 -11.5 40 23-62 14-54 (231)
153 3euj_A Chromosome partition pr 99.4 2.5E-14 8.6E-19 131.4 2.8 60 13-75 9-68 (483)
154 2px0_A Flagellar biosynthesis 99.4 9.8E-13 3.3E-17 113.9 7.2 127 34-206 103-234 (296)
155 1iy2_A ATP-dependent metallopr 99.3 4.4E-17 1.5E-21 139.2 -20.9 138 13-166 52-195 (278)
156 2dr3_A UPF0273 protein PH0284; 99.3 1.1E-12 3.7E-17 108.7 5.3 158 25-200 11-175 (247)
157 1oix_A RAS-related protein RAB 99.3 6.1E-13 2.1E-17 107.0 3.4 36 146-183 153-188 (191)
158 1ixz_A ATP-dependent metallopr 99.3 7.6E-17 2.6E-21 135.6 -21.3 141 11-167 26-172 (254)
159 1qhl_A Protein (cell division 99.3 4.6E-14 1.6E-18 117.9 -4.7 76 10-93 9-91 (227)
160 3k1j_A LON protease, ATP-depen 99.3 6.3E-14 2.2E-18 132.2 -4.8 160 17-183 41-227 (604)
161 2ius_A DNA translocase FTSK; n 99.3 1.6E-13 5.5E-18 126.8 -2.3 161 28-199 159-343 (512)
162 3tr0_A Guanylate kinase, GMP k 99.3 4.6E-13 1.6E-17 108.3 0.5 72 30-106 1-72 (205)
163 2f9l_A RAB11B, member RAS onco 99.2 2.1E-12 7.3E-17 104.1 3.1 64 147-212 130-197 (199)
164 2zr9_A Protein RECA, recombina 99.2 1.5E-11 5.3E-16 108.7 8.5 125 32-201 57-201 (349)
165 2r6a_A DNAB helicase, replicat 99.2 8E-12 2.7E-16 113.9 3.9 160 23-196 190-362 (454)
166 2ce7_A Cell division protein F 99.1 2.6E-10 8.9E-15 104.7 8.3 119 24-205 39-171 (476)
167 3nwj_A ATSK2; P loop, shikimat 99.0 7.6E-12 2.6E-16 105.9 -2.4 52 9-60 16-72 (250)
168 4e22_A Cytidylate kinase; P-lo 99.0 2.9E-11 9.9E-16 101.9 0.4 68 23-93 17-95 (252)
169 3kta_A Chromosome segregation 99.0 3.4E-10 1.2E-14 89.9 5.0 53 12-67 3-57 (182)
170 4eun_A Thermoresistant glucoki 99.0 3.6E-11 1.2E-15 97.5 -1.1 76 26-107 19-94 (200)
171 3hr8_A Protein RECA; alpha and 98.9 5E-10 1.7E-14 99.2 5.3 42 32-73 57-99 (356)
172 3uie_A Adenylyl-sulfate kinase 98.9 1.4E-11 4.8E-16 100.0 -4.8 61 14-75 3-65 (200)
173 2xau_A PRE-mRNA-splicing facto 98.9 5E-11 1.7E-15 115.4 -3.5 74 133-206 185-260 (773)
174 3a00_A Guanylate kinase, GMP k 98.9 2.9E-10 9.8E-15 91.2 1.4 27 36-62 1-27 (186)
175 2e87_A Hypothetical protein PH 98.8 5.1E-09 1.8E-13 92.4 8.1 125 35-199 166-293 (357)
176 2qtf_A Protein HFLX, GTP-bindi 98.8 1.3E-09 4.4E-14 96.9 3.6 131 38-184 181-351 (364)
177 1zu4_A FTSY; GTPase, signal re 98.8 4.7E-10 1.6E-14 98.0 -0.1 82 26-107 95-185 (320)
178 2j41_A Guanylate kinase; GMP, 98.8 2.2E-09 7.4E-14 86.5 3.8 35 31-65 1-35 (207)
179 2dy1_A Elongation factor G; tr 98.8 1.2E-09 4.2E-14 104.0 1.3 134 30-201 3-139 (665)
180 2dhr_A FTSH; AAA+ protein, hex 98.7 1.9E-11 6.4E-16 112.9 -12.6 138 15-168 45-188 (499)
181 3t34_A Dynamin-related protein 98.7 8.4E-10 2.9E-14 97.4 -3.0 169 23-196 24-212 (360)
182 1kgd_A CASK, peripheral plasma 98.7 5.8E-09 2E-13 83.1 2.1 35 35-69 4-39 (180)
183 4a1f_A DNAB helicase, replicat 98.7 3.4E-08 1.2E-12 86.8 7.0 129 24-196 34-164 (338)
184 1fnn_A CDC6P, cell division co 98.7 2.2E-07 7.5E-12 81.4 12.1 46 155-201 124-172 (389)
185 2vp4_A Deoxynucleoside kinase; 98.6 7.6E-09 2.6E-13 85.7 2.3 40 31-74 15-54 (230)
186 3vaa_A Shikimate kinase, SK; s 98.6 1.1E-08 3.9E-13 82.5 3.3 39 22-60 11-49 (199)
187 3tqc_A Pantothenate kinase; bi 98.6 3.2E-10 1.1E-14 99.2 -6.7 55 17-71 67-129 (321)
188 3m6a_A ATP-dependent protease 98.6 3.4E-10 1.2E-14 105.5 -7.2 57 14-71 87-143 (543)
189 1rz3_A Hypothetical protein rb 98.6 6.9E-09 2.3E-13 84.1 0.4 42 33-74 19-60 (201)
190 3kl4_A SRP54, signal recogniti 98.5 1.9E-07 6.6E-12 84.6 9.0 40 35-74 96-135 (433)
191 3ney_A 55 kDa erythrocyte memb 98.5 2.4E-08 8.1E-13 81.4 2.6 32 30-61 13-44 (197)
192 1jjv_A Dephospho-COA kinase; P 98.5 2.5E-08 8.5E-13 80.6 2.0 115 38-201 4-118 (206)
193 1knq_A Gluconate kinase; ALFA/ 98.5 2.2E-08 7.5E-13 78.8 1.5 38 34-75 6-43 (175)
194 3cr8_A Sulfate adenylyltranfer 98.5 2.3E-08 7.8E-13 93.3 1.1 43 32-74 365-409 (552)
195 3tau_A Guanylate kinase, GMP k 98.5 6.6E-08 2.3E-12 78.7 3.7 29 34-62 6-34 (208)
196 2p67_A LAO/AO transport system 98.5 7.1E-10 2.4E-14 97.5 -8.8 65 11-75 31-95 (341)
197 1v5w_A DMC1, meiotic recombina 98.5 2E-07 6.9E-12 81.8 6.6 28 32-59 118-145 (343)
198 1cke_A CK, MSSA, protein (cyti 98.5 1.2E-08 4E-13 83.5 -1.6 58 36-93 5-73 (227)
199 3b9p_A CG5977-PA, isoform A; A 98.4 1.3E-06 4.5E-11 74.2 11.2 65 140-204 97-175 (297)
200 1svm_A Large T antigen; AAA+ f 98.4 1.7E-08 5.9E-13 90.0 -0.9 134 23-167 156-312 (377)
201 1ega_A Protein (GTP-binding pr 98.4 3.6E-08 1.2E-12 85.1 0.8 59 139-204 101-165 (301)
202 2z4s_A Chromosomal replication 98.4 4.6E-07 1.6E-11 82.1 7.7 44 155-198 193-237 (440)
203 2z43_A DNA repair and recombin 98.4 6.3E-07 2.2E-11 77.9 7.3 28 32-59 103-130 (324)
204 3bh0_A DNAB-like replicative h 98.4 6.2E-07 2.1E-11 77.8 7.2 132 24-197 56-190 (315)
205 2qby_A CDC6 homolog 1, cell di 98.3 3.8E-08 1.3E-12 85.8 -1.0 30 34-63 43-72 (386)
206 1ypw_A Transitional endoplasmi 98.3 2.7E-07 9.1E-12 89.7 4.2 32 31-62 233-264 (806)
207 1f2t_A RAD50 ABC-ATPase; DNA d 98.3 3.9E-07 1.3E-11 70.6 4.3 31 27-58 15-45 (149)
208 1kag_A SKI, shikimate kinase I 98.3 2.2E-07 7.5E-12 72.7 2.4 33 35-71 3-35 (173)
209 3lxx_A GTPase IMAP family memb 98.3 6.3E-06 2.2E-10 68.0 10.7 42 155-196 111-154 (239)
210 1lv7_A FTSH; alpha/beta domain 98.2 5E-06 1.7E-10 69.3 9.0 34 26-61 37-70 (257)
211 2www_A Methylmalonic aciduria 98.2 2.8E-07 9.5E-12 81.2 1.2 41 35-75 73-113 (349)
212 2pez_A Bifunctional 3'-phospho 98.2 3.1E-07 1E-11 72.5 1.3 40 34-74 3-44 (179)
213 2ffh_A Protein (FFH); SRP54, s 98.2 8.4E-08 2.9E-12 86.8 -2.4 58 15-76 81-138 (425)
214 2w58_A DNAI, primosome compone 98.2 1.5E-06 5.1E-11 69.7 5.1 25 37-61 55-79 (202)
215 2qt1_A Nicotinamide riboside k 98.2 7E-07 2.4E-11 72.1 3.1 31 31-61 16-46 (207)
216 3cf0_A Transitional endoplasmi 98.2 1.9E-06 6.4E-11 74.0 5.4 30 31-60 44-73 (301)
217 4eaq_A DTMP kinase, thymidylat 98.2 7.2E-07 2.5E-11 73.9 2.7 47 24-71 11-60 (229)
218 1u94_A RECA protein, recombina 98.1 1.1E-05 3.6E-10 71.3 9.4 27 33-59 60-86 (356)
219 3qks_A DNA double-strand break 98.1 2.4E-06 8.1E-11 69.5 4.1 30 27-57 15-44 (203)
220 1l8q_A Chromosomal replication 98.1 1.1E-05 3.7E-10 69.5 8.2 43 155-197 97-140 (324)
221 1m7g_A Adenylylsulfate kinase; 98.1 5.4E-07 1.8E-11 73.2 -0.1 43 31-73 20-64 (211)
222 3ice_A Transcription terminati 98.0 4E-07 1.4E-11 81.3 -1.0 51 10-60 133-198 (422)
223 2qag_A Septin-2, protein NEDD5 98.0 2.6E-07 8.8E-12 81.8 -2.3 54 9-68 16-69 (361)
224 3bos_A Putative DNA replicatio 98.0 2.6E-06 9E-11 69.2 3.8 27 35-61 51-77 (242)
225 2q6t_A DNAB replication FORK h 98.0 8.6E-06 2.9E-10 73.7 7.2 38 24-61 188-225 (444)
226 2gj8_A MNME, tRNA modification 98.0 5.5E-06 1.9E-10 64.8 4.7 27 34-60 2-28 (172)
227 1mky_A Probable GTP-binding pr 98.0 5.7E-06 2E-10 74.8 5.4 37 38-74 182-230 (439)
228 1m2o_B GTP-binding protein SAR 98.0 4.7E-06 1.6E-10 66.1 4.2 48 24-72 12-67 (190)
229 1j8m_F SRP54, signal recogniti 98.0 5.3E-07 1.8E-11 77.8 -1.6 60 15-77 79-139 (297)
230 1f6b_A SAR1; gtpases, N-termin 98.0 1.2E-06 4.1E-11 70.2 0.2 55 18-73 7-70 (198)
231 3auy_A DNA double-strand break 97.9 1.4E-05 4.8E-10 70.6 6.8 43 11-57 3-46 (371)
232 4fcw_A Chaperone protein CLPB; 97.9 1.1E-05 3.7E-10 68.6 5.8 31 37-67 48-78 (311)
233 1sxj_D Activator 1 41 kDa subu 97.9 1.1E-07 3.7E-12 82.5 -7.1 44 156-201 133-176 (353)
234 3h4m_A Proteasome-activating n 97.9 1.9E-05 6.3E-10 66.5 7.0 28 33-60 48-75 (285)
235 1sxj_C Activator 1 40 kDa subu 97.9 2.2E-07 7.7E-12 80.9 -5.3 57 15-71 23-81 (340)
236 2yvu_A Probable adenylyl-sulfa 97.9 3.1E-06 1E-10 67.1 1.6 37 32-68 9-45 (186)
237 1y63_A LMAJ004144AAA protein; 97.9 6.5E-06 2.2E-10 65.4 3.1 32 28-59 2-33 (184)
238 2wji_A Ferrous iron transport 97.8 1.9E-05 6.4E-10 61.0 5.5 24 38-61 5-28 (165)
239 2if2_A Dephospho-COA kinase; a 97.8 6.4E-06 2.2E-10 66.0 2.7 21 38-58 3-23 (204)
240 2wjg_A FEOB, ferrous iron tran 97.8 1.2E-05 4E-10 63.1 3.9 22 38-59 9-30 (188)
241 2ohf_A Protein OLA1, GTP-bindi 97.8 9.7E-06 3.3E-10 72.6 3.7 41 32-72 18-69 (396)
242 2qor_A Guanylate kinase; phosp 97.8 9.6E-06 3.3E-10 65.4 3.1 30 32-61 8-37 (204)
243 1ypw_A Transitional endoplasmi 97.7 1.9E-06 6.3E-11 83.8 -2.7 32 30-61 505-536 (806)
244 1njg_A DNA polymerase III subu 97.7 4.7E-06 1.6E-10 67.1 0.1 47 155-203 125-171 (250)
245 3d8b_A Fidgetin-like protein 1 97.7 0.00018 6.3E-09 63.0 10.0 27 34-60 115-141 (357)
246 1xp8_A RECA protein, recombina 97.6 0.00022 7.6E-09 63.1 9.8 27 32-58 70-96 (366)
247 1np6_A Molybdopterin-guanine d 97.6 1.5E-05 5.1E-10 63.4 1.9 38 36-73 6-46 (174)
248 2zej_A Dardarin, leucine-rich 97.6 2.7E-05 9.3E-10 61.2 3.4 25 38-62 4-28 (184)
249 2qz4_A Paraplegin; AAA+, SPG7, 97.6 0.00029 9.9E-09 58.1 9.9 28 33-60 36-63 (262)
250 2v1u_A Cell division control p 97.6 3.5E-05 1.2E-09 67.0 4.3 28 34-61 42-69 (387)
251 3cm0_A Adenylate kinase; ATP-b 97.6 2.7E-05 9.1E-10 61.3 3.1 25 34-58 2-26 (186)
252 3t61_A Gluconokinase; PSI-biol 97.6 2.2E-05 7.4E-10 62.9 2.5 35 36-74 18-52 (202)
253 2i1q_A DNA repair and recombin 97.6 0.00013 4.6E-09 62.8 7.1 27 32-58 94-120 (322)
254 1q3t_A Cytidylate kinase; nucl 97.6 3.4E-05 1.2E-09 63.6 3.2 27 32-58 12-38 (236)
255 2ga8_A Hypothetical 39.9 kDa p 97.6 5.4E-06 1.8E-10 73.2 -1.8 37 24-60 10-48 (359)
256 3r20_A Cytidylate kinase; stru 97.5 1.8E-05 6.3E-10 65.9 0.7 32 36-67 9-43 (233)
257 2p5t_B PEZT; postsegregational 97.5 3.1E-05 1.1E-09 64.6 2.1 41 32-74 28-68 (253)
258 3kb2_A SPBC2 prophage-derived 97.5 6.1E-05 2.1E-09 58.1 3.3 23 38-60 3-25 (173)
259 1qhx_A CPT, protein (chloramph 97.5 7.5E-05 2.6E-09 58.2 3.6 27 35-61 2-28 (178)
260 1kht_A Adenylate kinase; phosp 97.4 9.2E-05 3.1E-09 58.1 3.6 26 35-60 2-27 (192)
261 3n70_A Transport activator; si 97.4 0.00068 2.3E-08 51.4 8.3 28 34-61 22-49 (145)
262 4ag6_A VIRB4 ATPase, type IV s 97.4 4.4E-05 1.5E-09 67.6 1.4 48 156-203 262-312 (392)
263 2vhj_A Ntpase P4, P4; non- hyd 97.3 0.0004 1.4E-08 60.5 7.2 28 31-58 118-145 (331)
264 1uf9_A TT1252 protein; P-loop, 97.3 0.0001 3.4E-09 58.6 3.0 31 36-71 8-38 (203)
265 1vht_A Dephospho-COA kinase; s 97.3 0.00012 4.2E-09 59.2 3.6 24 35-58 3-26 (218)
266 3lw7_A Adenylate kinase relate 97.3 0.00012 4E-09 56.3 3.3 19 38-56 3-21 (179)
267 1jal_A YCHF protein; nucleotid 97.3 0.00016 5.6E-09 63.9 4.6 36 36-71 2-48 (363)
268 2rhm_A Putative kinase; P-loop 97.3 0.00011 3.6E-09 58.0 3.0 26 34-59 3-28 (193)
269 1xwi_A SKD1 protein; VPS4B, AA 97.3 0.0016 5.5E-08 56.2 10.8 27 34-60 43-69 (322)
270 2ze6_A Isopentenyl transferase 97.3 0.0001 3.4E-09 61.7 2.9 24 37-60 2-25 (253)
271 3ihw_A Centg3; RAS, centaurin, 97.3 0.00028 9.6E-09 55.5 5.3 36 38-73 22-66 (184)
272 1gtv_A TMK, thymidylate kinase 97.3 2.9E-05 1E-09 62.3 -0.6 26 38-63 2-27 (214)
273 2jaq_A Deoxyguanosine kinase; 97.3 0.00014 4.9E-09 57.6 3.4 23 38-60 2-24 (205)
274 1q57_A DNA primase/helicase; d 97.3 0.0014 4.8E-08 59.9 10.4 27 32-58 238-264 (503)
275 3io5_A Recombination and repai 97.3 0.00087 3E-08 58.3 8.4 27 33-60 26-53 (333)
276 1via_A Shikimate kinase; struc 97.3 0.00013 4.3E-09 57.0 2.8 23 38-60 6-28 (175)
277 2v54_A DTMP kinase, thymidylat 97.2 0.00018 6.2E-09 57.1 3.7 26 35-60 3-28 (204)
278 3trf_A Shikimate kinase, SK; a 97.2 0.00018 6.1E-09 56.4 3.6 26 35-60 4-29 (185)
279 3iij_A Coilin-interacting nucl 97.2 0.00015 5.2E-09 56.8 3.1 25 34-58 9-33 (180)
280 1ex7_A Guanylate kinase; subst 97.2 0.00015 5.3E-09 58.1 3.1 22 39-60 4-25 (186)
281 1ly1_A Polynucleotide kinase; 97.2 0.00019 6.6E-09 55.6 3.4 22 37-58 3-24 (181)
282 3dm5_A SRP54, signal recogniti 97.2 0.0027 9.1E-08 57.5 11.3 35 35-69 99-133 (443)
283 2plr_A DTMP kinase, probable t 97.2 0.00021 7.3E-09 56.9 3.6 27 35-61 3-29 (213)
284 2wwf_A Thymidilate kinase, put 97.2 0.00021 7.3E-09 57.1 3.5 26 34-59 8-33 (212)
285 1fzq_A ADP-ribosylation factor 97.2 0.00021 7.2E-09 55.9 3.4 24 37-60 17-40 (181)
286 3k53_A Ferrous iron transport 97.2 0.00019 6.6E-09 60.2 3.2 41 165-205 144-185 (271)
287 2c95_A Adenylate kinase 1; tra 97.2 0.00023 7.9E-09 56.1 3.4 26 34-59 7-32 (196)
288 1gvn_B Zeta; postsegregational 97.2 0.00019 6.4E-09 61.3 3.0 37 33-71 30-66 (287)
289 1tev_A UMP-CMP kinase; ploop, 97.1 0.00025 8.7E-09 55.6 3.5 25 35-59 2-26 (196)
290 3cmw_A Protein RECA, recombina 97.1 0.0013 4.3E-08 68.4 9.3 35 33-67 729-763 (1706)
291 1nn5_A Similar to deoxythymidy 97.1 0.00025 8.5E-09 56.7 3.4 26 34-59 7-32 (215)
292 3co5_A Putative two-component 97.1 0.00068 2.3E-08 51.4 5.3 41 156-197 75-115 (143)
293 1nks_A Adenylate kinase; therm 97.1 0.00029 9.9E-09 55.2 3.2 23 38-60 3-25 (194)
294 1ko7_A HPR kinase/phosphatase; 97.1 0.00044 1.5E-08 60.0 4.5 47 22-69 131-181 (314)
295 3ake_A Cytidylate kinase; CMP 97.1 0.00032 1.1E-08 55.8 3.3 23 38-60 4-26 (208)
296 3llm_A ATP-dependent RNA helic 97.1 0.00022 7.4E-09 58.6 2.4 25 33-57 73-97 (235)
297 2vli_A Antibiotic resistance p 97.0 0.00024 8.1E-09 55.5 2.4 26 35-60 4-29 (183)
298 2z0h_A DTMP kinase, thymidylat 97.0 0.00034 1.2E-08 55.2 3.3 23 38-60 2-24 (197)
299 3vfd_A Spastin; ATPase, microt 97.0 0.0033 1.1E-07 55.5 10.0 26 35-60 147-172 (389)
300 1xjc_A MOBB protein homolog; s 97.0 0.00038 1.3E-08 55.0 3.4 25 37-61 5-29 (169)
301 1jr3_A DNA polymerase III subu 97.0 0.001 3.5E-08 57.5 6.4 44 156-201 119-162 (373)
302 2bwj_A Adenylate kinase 5; pho 97.0 0.00042 1.4E-08 54.7 3.3 27 34-60 10-36 (199)
303 3bgw_A DNAB-like replicative h 97.0 0.0027 9.3E-08 57.4 9.0 33 26-58 187-219 (444)
304 2ged_A SR-beta, signal recogni 97.0 0.00038 1.3E-08 54.5 2.9 25 37-61 49-73 (193)
305 1aky_A Adenylate kinase; ATP:A 96.9 0.00053 1.8E-08 55.5 3.7 26 35-60 3-28 (220)
306 1zd8_A GTP:AMP phosphotransfer 96.9 0.00048 1.7E-08 56.1 3.4 26 34-59 5-30 (227)
307 3b1v_A Ferrous iron uptake tra 96.9 0.0005 1.7E-08 58.2 3.5 23 38-60 5-27 (272)
308 4b4t_J 26S protease regulatory 96.9 0.0082 2.8E-07 53.7 11.5 56 150-205 235-304 (405)
309 2pbr_A DTMP kinase, thymidylat 96.9 0.00054 1.8E-08 53.7 3.3 23 38-60 2-24 (195)
310 2nzj_A GTP-binding protein REM 96.9 0.00054 1.9E-08 52.4 3.3 23 38-60 6-28 (175)
311 3fb4_A Adenylate kinase; psych 96.9 0.00054 1.8E-08 55.1 3.3 22 38-59 2-23 (216)
312 2erx_A GTP-binding protein DI- 96.9 0.00056 1.9E-08 52.0 3.3 22 38-59 5-26 (172)
313 3q72_A GTP-binding protein RAD 96.9 0.00043 1.5E-08 52.5 2.6 24 38-61 4-27 (166)
314 1zuh_A Shikimate kinase; alpha 96.9 0.00062 2.1E-08 52.6 3.5 24 36-59 7-30 (168)
315 2cdn_A Adenylate kinase; phosp 96.9 0.00066 2.3E-08 54.0 3.7 25 35-59 19-43 (201)
316 2qmh_A HPR kinase/phosphorylas 96.9 0.00096 3.3E-08 54.2 4.6 39 21-60 20-58 (205)
317 1e6c_A Shikimate kinase; phosp 96.9 0.00049 1.7E-08 53.1 2.8 23 37-59 3-25 (173)
318 1z2a_A RAS-related protein RAB 96.9 0.00046 1.6E-08 52.3 2.6 23 38-60 7-29 (168)
319 2pt5_A Shikimate kinase, SK; a 96.9 0.00064 2.2E-08 52.3 3.4 22 38-59 2-23 (168)
320 1ukz_A Uridylate kinase; trans 96.9 0.00061 2.1E-08 54.2 3.3 25 35-59 14-38 (203)
321 3q85_A GTP-binding protein REM 96.9 0.00061 2.1E-08 51.9 3.2 23 38-60 4-26 (169)
322 1qf9_A UMP/CMP kinase, protein 96.8 0.0006 2.1E-08 53.3 3.2 24 36-59 6-29 (194)
323 3tw8_B RAS-related protein RAB 96.8 0.00055 1.9E-08 52.6 2.9 23 38-60 11-33 (181)
324 3hu3_A Transitional endoplasmi 96.8 0.0014 5E-08 60.0 6.2 28 33-60 235-262 (489)
325 1zak_A Adenylate kinase; ATP:A 96.8 0.00052 1.8E-08 55.6 2.8 25 35-59 4-28 (222)
326 2ce2_X GTPase HRAS; signaling 96.8 0.00048 1.6E-08 51.8 2.4 23 38-60 5-27 (166)
327 2dyk_A GTP-binding protein; GT 96.8 0.00059 2E-08 51.4 2.9 23 38-60 3-25 (161)
328 2lkc_A Translation initiation 96.8 0.00083 2.8E-08 51.6 3.8 25 35-59 7-31 (178)
329 3dl0_A Adenylate kinase; phosp 96.8 0.00066 2.3E-08 54.6 3.3 22 38-59 2-23 (216)
330 1kao_A RAP2A; GTP-binding prot 96.8 0.00057 1.9E-08 51.6 2.7 22 38-59 5-26 (167)
331 2iyv_A Shikimate kinase, SK; t 96.8 0.00056 1.9E-08 53.6 2.7 23 37-59 3-25 (184)
332 1u8z_A RAS-related protein RAL 96.8 0.00056 1.9E-08 51.7 2.6 22 38-59 6-27 (168)
333 1svi_A GTP-binding protein YSX 96.8 0.00063 2.2E-08 53.2 3.0 24 37-60 24-47 (195)
334 1z0j_A RAB-22, RAS-related pro 96.8 0.00058 2E-08 51.9 2.7 23 38-60 8-30 (170)
335 3pqc_A Probable GTP-binding pr 96.8 0.00065 2.2E-08 52.9 3.0 23 38-60 25-47 (195)
336 3a4m_A L-seryl-tRNA(SEC) kinas 96.8 0.00077 2.6E-08 56.3 3.6 25 35-59 3-27 (260)
337 1z08_A RAS-related protein RAB 96.8 0.0006 2.1E-08 51.8 2.7 22 38-59 8-29 (170)
338 1ek0_A Protein (GTP-binding pr 96.8 0.00061 2.1E-08 51.6 2.6 23 38-60 5-27 (170)
339 3lxw_A GTPase IMAP family memb 96.8 0.00078 2.7E-08 55.9 3.5 24 38-61 23-46 (247)
340 1ky3_A GTP-binding protein YPT 96.8 0.00062 2.1E-08 52.3 2.7 23 38-60 10-32 (182)
341 1uj2_A Uridine-cytidine kinase 96.8 0.00075 2.6E-08 56.0 3.3 24 37-60 23-46 (252)
342 2cxx_A Probable GTP-binding pr 96.8 0.00066 2.3E-08 52.7 2.8 23 38-60 3-25 (190)
343 1c1y_A RAS-related protein RAP 96.8 0.00064 2.2E-08 51.5 2.6 22 38-59 5-26 (167)
344 1g16_A RAS-related protein SEC 96.8 0.00058 2E-08 51.9 2.4 23 38-60 5-27 (170)
345 1wms_A RAB-9, RAB9, RAS-relate 96.7 0.00065 2.2E-08 52.1 2.7 23 38-60 9-31 (177)
346 4b4t_H 26S protease regulatory 96.7 0.011 3.6E-07 53.9 10.9 60 146-205 292-365 (467)
347 2grj_A Dephospho-COA kinase; T 96.7 0.00084 2.9E-08 53.9 3.3 24 36-59 12-35 (192)
348 3cmw_A Protein RECA, recombina 96.7 0.0089 3.1E-07 62.1 11.6 27 33-59 380-406 (1706)
349 1moz_A ARL1, ADP-ribosylation 96.7 0.00049 1.7E-08 53.2 1.8 23 36-58 18-40 (183)
350 2fn4_A P23, RAS-related protei 96.7 0.00064 2.2E-08 52.2 2.5 22 38-59 11-32 (181)
351 4b4t_K 26S protease regulatory 96.7 0.012 4.2E-07 52.9 11.0 55 151-205 260-328 (428)
352 1a7j_A Phosphoribulokinase; tr 96.7 0.00039 1.3E-08 59.4 1.1 26 35-60 4-29 (290)
353 3clv_A RAB5 protein, putative; 96.7 0.00079 2.7E-08 52.5 2.7 23 38-60 9-31 (208)
354 4dsu_A GTPase KRAS, isoform 2B 96.7 0.00079 2.7E-08 52.1 2.7 23 38-60 6-28 (189)
355 2hxs_A RAB-26, RAS-related pro 96.7 0.00094 3.2E-08 51.2 3.1 23 38-60 8-30 (178)
356 1r2q_A RAS-related protein RAB 96.7 0.0008 2.7E-08 51.0 2.6 22 38-59 8-29 (170)
357 1wf3_A GTP-binding protein; GT 96.7 0.00098 3.4E-08 57.2 3.5 23 38-60 9-31 (301)
358 2xb4_A Adenylate kinase; ATP-b 96.7 0.001 3.5E-08 54.2 3.4 22 38-59 2-23 (223)
359 3tlx_A Adenylate kinase 2; str 96.7 0.0011 3.6E-08 55.0 3.5 24 35-58 28-51 (243)
360 2oil_A CATX-8, RAS-related pro 96.7 0.0008 2.7E-08 52.7 2.6 22 38-59 27-48 (193)
361 2f6r_A COA synthase, bifunctio 96.7 0.00093 3.2E-08 56.6 3.2 23 36-58 75-97 (281)
362 3bc1_A RAS-related protein RAB 96.6 0.00082 2.8E-08 52.1 2.6 22 38-59 13-34 (195)
363 1upt_A ARL1, ADP-ribosylation 96.6 0.00094 3.2E-08 50.8 2.9 22 38-59 9-30 (171)
364 3t1o_A Gliding protein MGLA; G 96.6 0.00093 3.2E-08 52.0 2.8 25 38-62 16-40 (198)
365 3t5d_A Septin-7; GTP-binding p 96.6 0.00083 2.8E-08 56.5 2.7 23 38-60 10-32 (274)
366 1r8s_A ADP-ribosylation factor 96.6 0.00091 3.1E-08 50.6 2.6 21 38-58 2-22 (164)
367 3iby_A Ferrous iron transport 96.6 0.0011 3.6E-08 55.6 3.2 23 38-60 3-25 (256)
368 2y8e_A RAB-protein 6, GH09086P 96.6 0.00085 2.9E-08 51.4 2.4 22 38-59 16-37 (179)
369 3cnl_A YLQF, putative uncharac 96.6 0.0013 4.3E-08 55.4 3.7 30 37-66 100-129 (262)
370 1jbk_A CLPB protein; beta barr 96.6 0.0014 4.6E-08 50.5 3.6 27 34-60 41-67 (195)
371 3iev_A GTP-binding protein ERA 96.6 0.0012 3.9E-08 56.8 3.5 24 37-60 11-34 (308)
372 2a9k_A RAS-related protein RAL 96.6 0.00093 3.2E-08 51.5 2.6 22 38-59 20-41 (187)
373 1z0f_A RAB14, member RAS oncog 96.6 0.00095 3.2E-08 51.1 2.6 23 38-60 17-39 (179)
374 3con_A GTPase NRAS; structural 96.6 0.00095 3.2E-08 52.0 2.6 22 38-59 23-44 (190)
375 3tqf_A HPR(Ser) kinase; transf 96.6 0.0022 7.5E-08 51.0 4.7 35 23-58 4-38 (181)
376 1sky_E F1-ATPase, F1-ATP synth 96.6 0.00046 1.6E-08 63.0 0.8 44 24-68 140-183 (473)
377 2g6b_A RAS-related protein RAB 96.6 0.00099 3.4E-08 51.2 2.6 23 38-60 12-34 (180)
378 3cbq_A GTP-binding protein REM 96.6 0.00094 3.2E-08 52.9 2.5 22 38-59 25-46 (195)
379 2xtp_A GTPase IMAP family memb 96.6 0.0013 4.3E-08 54.6 3.3 23 38-60 24-46 (260)
380 3cmu_A Protein RECA, recombina 96.5 0.008 2.7E-07 63.4 9.8 28 33-60 380-407 (2050)
381 2efe_B Small GTP-binding prote 96.5 0.0011 3.8E-08 51.0 2.7 23 38-60 14-36 (181)
382 1ksh_A ARF-like protein 2; sma 96.5 0.0014 4.7E-08 50.9 3.2 26 35-60 17-42 (186)
383 3u61_B DNA polymerase accessor 96.5 0.0066 2.2E-07 51.8 7.8 44 156-201 105-149 (324)
384 2dby_A GTP-binding protein; GD 96.5 0.00098 3.3E-08 59.0 2.6 22 38-59 3-24 (368)
385 4dhe_A Probable GTP-binding pr 96.5 0.00076 2.6E-08 54.1 1.7 24 37-60 30-53 (223)
386 4edh_A DTMP kinase, thymidylat 96.5 0.0015 5.2E-08 53.2 3.6 28 34-61 4-31 (213)
387 2bme_A RAB4A, RAS-related prot 96.5 0.001 3.5E-08 51.5 2.4 22 38-59 12-33 (186)
388 1nrj_B SR-beta, signal recogni 96.5 0.0012 4.1E-08 52.8 2.9 23 38-60 14-36 (218)
389 3be4_A Adenylate kinase; malar 96.5 0.0015 5E-08 52.9 3.4 26 35-60 4-29 (217)
390 2bov_A RAla, RAS-related prote 96.5 0.0011 3.8E-08 52.1 2.6 22 38-59 16-37 (206)
391 1e4v_A Adenylate kinase; trans 96.5 0.0013 4.5E-08 52.9 3.1 22 38-59 2-23 (214)
392 1vg8_A RAS-related protein RAB 96.5 0.0012 4E-08 52.2 2.7 23 38-60 10-32 (207)
393 3a1s_A Iron(II) transport prot 96.5 0.0016 5.4E-08 54.5 3.5 23 38-60 7-29 (258)
394 1ltq_A Polynucleotide kinase; 96.5 0.0015 5.1E-08 55.2 3.4 22 37-58 3-24 (301)
395 3tkl_A RAS-related protein RAB 96.5 0.0012 4.1E-08 51.5 2.6 23 38-60 18-40 (196)
396 2gf9_A RAS-related protein RAB 96.5 0.0012 4.1E-08 51.5 2.6 23 38-60 24-46 (189)
397 2gf0_A GTP-binding protein DI- 96.5 0.0011 3.9E-08 51.8 2.5 22 38-59 10-31 (199)
398 1zbd_A Rabphilin-3A; G protein 96.5 0.0015 5.2E-08 51.5 3.2 23 38-60 10-32 (203)
399 3i8s_A Ferrous iron transport 96.5 0.0015 5E-08 55.1 3.3 23 38-60 5-27 (274)
400 1m7b_A RND3/RHOE small GTP-bin 96.5 0.0011 3.9E-08 51.5 2.4 22 38-59 9-30 (184)
401 2iut_A DNA translocase FTSK; n 96.5 0.0063 2.2E-07 56.7 7.8 42 28-69 206-251 (574)
402 2il1_A RAB12; G-protein, GDP, 96.5 0.0013 4.5E-08 51.7 2.8 23 38-60 28-50 (192)
403 3t5g_A GTP-binding protein RHE 96.5 0.003 1E-07 48.6 4.8 21 38-58 8-28 (181)
404 2fg5_A RAB-22B, RAS-related pr 96.5 0.0012 4.1E-08 51.9 2.5 23 38-60 25-47 (192)
405 3lv8_A DTMP kinase, thymidylat 96.5 0.0017 5.7E-08 54.0 3.4 27 35-61 26-52 (236)
406 3kkq_A RAS-related protein M-R 96.5 0.0014 4.9E-08 50.6 2.9 22 38-59 20-41 (183)
407 1jwy_B Dynamin A GTPase domain 96.5 0.0015 5.1E-08 55.5 3.2 23 38-60 26-48 (315)
408 2o52_A RAS-related protein RAB 96.5 0.0015 5.1E-08 51.8 3.0 23 38-60 27-49 (200)
409 1mh1_A RAC1; GTP-binding, GTPa 96.4 0.0013 4.6E-08 50.7 2.6 22 38-59 7-28 (186)
410 2wsm_A Hydrogenase expression/ 96.4 0.0013 4.6E-08 52.7 2.7 24 37-60 31-54 (221)
411 1zj6_A ADP-ribosylation factor 96.4 0.0017 5.9E-08 50.6 3.2 23 37-59 17-39 (187)
412 3v9p_A DTMP kinase, thymidylat 96.4 0.0013 4.5E-08 54.3 2.7 28 34-61 23-50 (227)
413 1qvr_A CLPB protein; coiled co 96.4 0.003 1E-07 61.5 5.6 26 37-62 589-614 (854)
414 2h57_A ADP-ribosylation factor 96.4 0.0012 4.2E-08 51.5 2.4 23 38-60 23-45 (190)
415 4bas_A ADP-ribosylation factor 96.4 0.0017 5.8E-08 50.8 3.1 22 38-59 19-40 (199)
416 2qu8_A Putative nucleolar GTP- 96.4 0.0017 5.9E-08 52.5 3.2 23 37-59 30-52 (228)
417 3d3q_A TRNA delta(2)-isopenten 96.4 0.0017 5.8E-08 56.9 3.3 25 37-61 8-32 (340)
418 3zvl_A Bifunctional polynucleo 96.4 0.0017 5.8E-08 58.2 3.4 26 34-59 256-281 (416)
419 1z06_A RAS-related protein RAB 96.4 0.0015 5E-08 51.1 2.7 22 38-59 22-43 (189)
420 4tmk_A Protein (thymidylate ki 96.4 0.0019 6.6E-08 52.7 3.5 27 35-61 2-28 (213)
421 3oes_A GTPase rhebl1; small GT 96.4 0.0013 4.5E-08 52.0 2.4 23 38-60 26-48 (201)
422 1ak2_A Adenylate kinase isoenz 96.4 0.0021 7.2E-08 52.5 3.7 26 35-60 15-40 (233)
423 2r8r_A Sensor protein; KDPD, P 96.4 0.00047 1.6E-08 57.1 -0.3 44 153-196 81-125 (228)
424 2a5j_A RAS-related protein RAB 96.4 0.0015 5.1E-08 51.2 2.6 23 38-60 23-45 (191)
425 2h92_A Cytidylate kinase; ross 96.4 0.0017 5.8E-08 52.2 3.0 25 36-60 3-27 (219)
426 2cjw_A GTP-binding protein GEM 96.4 0.0017 5.7E-08 51.4 2.9 22 38-59 8-29 (192)
427 2ocp_A DGK, deoxyguanosine kin 96.4 0.002 6.7E-08 52.9 3.4 27 35-61 1-27 (241)
428 2h17_A ADP-ribosylation factor 96.4 0.0016 5.6E-08 50.5 2.8 23 38-60 23-45 (181)
429 3llu_A RAS-related GTP-binding 96.4 0.002 6.7E-08 50.8 3.3 24 38-61 22-45 (196)
430 3dz8_A RAS-related protein RAB 96.4 0.0014 4.8E-08 51.3 2.4 23 38-60 25-47 (191)
431 2f7s_A C25KG, RAS-related prot 96.4 0.002 6.7E-08 51.5 3.3 24 38-61 27-50 (217)
432 3bwd_D RAC-like GTP-binding pr 96.4 0.0016 5.4E-08 50.1 2.6 23 38-60 10-32 (182)
433 2p65_A Hypothetical protein PF 96.4 0.0018 6.1E-08 49.9 2.9 27 35-61 42-68 (187)
434 2ew1_A RAS-related protein RAB 96.4 0.0014 4.9E-08 52.3 2.4 22 38-59 28-49 (201)
435 3exa_A TRNA delta(2)-isopenten 96.4 0.0022 7.4E-08 55.7 3.6 25 36-60 3-27 (322)
436 3reg_A RHO-like small GTPase; 96.4 0.0016 5.5E-08 51.0 2.6 23 38-60 25-47 (194)
437 2q3h_A RAS homolog gene family 96.3 0.002 7E-08 50.6 3.2 24 37-60 21-44 (201)
438 2atv_A RERG, RAS-like estrogen 96.3 0.0017 5.7E-08 51.1 2.7 22 38-59 30-51 (196)
439 1zd9_A ADP-ribosylation factor 96.3 0.0017 5.6E-08 50.8 2.6 22 38-59 24-45 (188)
440 1x3s_A RAS-related protein RAB 96.3 0.0017 5.8E-08 50.5 2.6 23 38-60 17-39 (195)
441 2j1l_A RHO-related GTP-binding 96.3 0.0019 6.7E-08 51.7 3.0 22 38-59 36-57 (214)
442 3cph_A RAS-related protein SEC 96.3 0.0017 5.8E-08 51.5 2.6 24 37-60 21-44 (213)
443 2p5s_A RAS and EF-hand domain 96.3 0.0017 5.8E-08 51.2 2.6 24 37-60 29-52 (199)
444 2bcg_Y Protein YP2, GTP-bindin 96.3 0.0016 5.3E-08 51.6 2.4 23 38-60 10-32 (206)
445 3ld9_A DTMP kinase, thymidylat 96.3 0.0024 8.1E-08 52.6 3.5 28 34-61 19-46 (223)
446 3a8t_A Adenylate isopentenyltr 96.3 0.0023 7.8E-08 56.0 3.5 27 35-61 39-65 (339)
447 3tmk_A Thymidylate kinase; pho 96.3 0.0024 8.1E-08 52.3 3.4 33 34-67 3-35 (216)
448 2iwr_A Centaurin gamma 1; ANK 96.3 0.0014 4.9E-08 50.4 2.0 22 38-59 9-30 (178)
449 2aka_B Dynamin-1; fusion prote 96.3 0.0021 7.1E-08 54.1 3.0 24 38-61 28-51 (299)
450 2fv8_A H6, RHO-related GTP-bin 96.3 0.0018 6E-08 51.6 2.5 23 38-60 27-49 (207)
451 3def_A T7I23.11 protein; chlor 96.3 0.0024 8.1E-08 53.3 3.3 23 38-60 38-60 (262)
452 1h65_A Chloroplast outer envel 96.3 0.0023 7.9E-08 53.5 3.2 23 38-60 41-63 (270)
453 1gwn_A RHO-related GTP-binding 96.2 0.0018 6.3E-08 51.8 2.4 23 38-60 30-52 (205)
454 3crm_A TRNA delta(2)-isopenten 96.2 0.0025 8.6E-08 55.4 3.4 24 37-60 6-29 (323)
455 2fu5_C RAS-related protein RAB 96.2 0.0014 4.8E-08 50.7 1.6 23 38-60 10-32 (183)
456 3c5c_A RAS-like protein 12; GD 96.2 0.0021 7.3E-08 50.3 2.7 22 38-59 23-44 (187)
457 2b6h_A ADP-ribosylation factor 96.2 0.0021 7.1E-08 50.7 2.6 23 37-59 30-52 (192)
458 3cmu_A Protein RECA, recombina 96.2 0.016 5.4E-07 61.2 9.7 26 33-58 1424-1449(2050)
459 2gco_A H9, RHO-related GTP-bin 96.2 0.0021 7.1E-08 50.9 2.4 22 38-59 27-48 (201)
460 2fh5_B SR-beta, signal recogni 96.2 0.0035 1.2E-07 49.9 3.7 23 38-60 9-31 (214)
461 1p5z_B DCK, deoxycytidine kina 96.2 0.0017 5.9E-08 54.1 1.9 28 34-61 22-49 (263)
462 2zts_A Putative uncharacterize 96.2 0.0039 1.3E-07 50.6 4.1 25 32-56 26-50 (251)
463 2atx_A Small GTP binding prote 96.1 0.0024 8.1E-08 50.0 2.5 22 38-59 20-41 (194)
464 3umf_A Adenylate kinase; rossm 96.1 0.0024 8.2E-08 52.3 2.6 28 32-59 25-52 (217)
465 2g3y_A GTP-binding protein GEM 96.1 0.0035 1.2E-07 50.8 3.5 22 38-59 39-60 (211)
466 2orw_A Thymidine kinase; TMTK, 96.1 0.0036 1.2E-07 49.6 3.4 24 35-58 2-26 (184)
467 3euj_A Chromosome partition pr 96.1 0.011 3.6E-07 54.2 6.9 62 132-197 373-451 (483)
468 4djt_A GTP-binding nuclear pro 96.1 0.0013 4.3E-08 52.6 0.7 23 38-60 13-35 (218)
469 2hf9_A Probable hydrogenase ni 96.1 0.0033 1.1E-07 50.5 3.1 24 37-60 39-62 (226)
470 4dcu_A GTP-binding protein ENG 96.0 0.0026 8.7E-08 57.5 2.6 23 37-59 24-46 (456)
471 3foz_A TRNA delta(2)-isopenten 96.0 0.0039 1.3E-07 54.0 3.5 25 36-60 10-34 (316)
472 4hlc_A DTMP kinase, thymidylat 96.0 0.0041 1.4E-07 50.3 3.5 26 36-61 2-27 (205)
473 2x77_A ADP-ribosylation factor 96.0 0.002 6.9E-08 50.1 1.6 23 37-59 23-45 (189)
474 2yc2_C IFT27, small RAB-relate 96.0 0.0013 4.6E-08 51.7 0.4 22 38-59 22-43 (208)
475 2hup_A RAS-related protein RAB 96.0 0.003 1E-07 50.0 2.5 23 38-60 31-53 (201)
476 3cpj_B GTP-binding protein YPT 96.0 0.0034 1.1E-07 50.6 2.7 23 38-60 15-37 (223)
477 4gzl_A RAS-related C3 botulinu 95.9 0.0037 1.3E-07 49.7 2.6 22 37-58 31-52 (204)
478 3q3j_B RHO-related GTP-binding 95.9 0.0037 1.3E-07 50.2 2.6 22 38-59 29-50 (214)
479 2chg_A Replication factor C sm 95.8 0.0048 1.6E-07 48.5 3.1 45 155-201 101-145 (226)
480 1puj_A YLQF, conserved hypothe 95.8 0.0065 2.2E-07 51.6 4.0 29 37-65 121-149 (282)
481 2j0v_A RAC-like GTP-binding pr 95.8 0.0039 1.3E-07 49.5 2.4 22 38-59 11-32 (212)
482 3eph_A TRNA isopentenyltransfe 95.7 0.0057 1.9E-07 54.8 3.3 24 37-60 3-26 (409)
483 3sr0_A Adenylate kinase; phosp 95.7 0.0062 2.1E-07 49.3 3.3 23 38-60 2-24 (206)
484 3syl_A Protein CBBX; photosynt 95.7 0.0062 2.1E-07 51.3 3.5 26 35-60 66-91 (309)
485 2v3c_C SRP54, signal recogniti 95.7 0.0018 6E-08 58.5 -0.2 44 31-74 92-137 (432)
486 2orv_A Thymidine kinase; TP4A 95.6 0.049 1.7E-06 45.0 8.5 40 155-200 89-128 (234)
487 3pvs_A Replication-associated 95.6 0.0031 1.1E-07 57.1 1.4 40 27-66 39-80 (447)
488 2r62_A Cell division protease 95.6 0.0027 9.3E-08 52.6 0.9 21 39-59 47-67 (268)
489 3uk6_A RUVB-like 2; hexameric 95.6 0.0061 2.1E-07 52.7 2.9 36 35-70 69-104 (368)
490 3p32_A Probable GTPase RV1496/ 95.6 0.0061 2.1E-07 53.2 2.9 26 35-60 78-103 (355)
491 1wxq_A GTP-binding protein; st 95.5 0.0075 2.5E-07 53.8 3.3 57 136-196 195-251 (397)
492 1d2n_A N-ethylmaleimide-sensit 95.5 0.0076 2.6E-07 50.1 3.0 26 34-59 62-87 (272)
493 3th5_A RAS-related C3 botulinu 94.4 0.0025 8.5E-08 50.4 0.0 23 37-59 31-53 (204)
494 2qgz_A Helicase loader, putati 95.4 0.0098 3.3E-07 51.0 3.7 25 36-60 152-176 (308)
495 1ofh_A ATP-dependent HSL prote 95.4 0.0081 2.8E-07 50.4 3.1 25 36-60 50-74 (310)
496 2qby_B CDC6 homolog 3, cell di 95.4 0.0089 3.1E-07 51.8 3.5 25 36-60 45-69 (384)
497 2qen_A Walker-type ATPase; unk 95.4 0.0099 3.4E-07 50.5 3.6 26 35-60 30-55 (350)
498 2hjg_A GTP-binding protein ENG 95.4 0.0068 2.3E-07 54.4 2.6 23 38-60 5-27 (436)
499 2x2e_A Dynamin-1; nitration, h 95.4 0.0056 1.9E-07 53.4 2.0 23 38-60 33-55 (353)
500 3r7w_A Gtpase1, GTP-binding pr 95.4 0.011 3.8E-07 50.5 3.8 23 37-59 4-26 (307)
No 1
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.3e-56 Score=376.08 Aligned_cols=197 Identities=23% Similarity=0.332 Sum_probs=174.6
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhh--hh-hh
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFH--QY-KL 85 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~--~~-~~ 85 (229)
++|+++||+++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++....... .. +.
T Consensus 3 ~~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 82 (224)
T 2pcj_A 3 EILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNR 82 (224)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHH
T ss_pred cEEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhC
Confidence 3799999999999999999999999999999999999999999999999999999999999999986543211 12 25
Q ss_pred cceEeecccccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeE
Q 027067 86 QLNWLSLKDAVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIW 160 (229)
Q Consensus 86 ~~~~~~~~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~il 160 (229)
.++|++|++.+++.+||.||+.++..... ...++.++++.+++.+..++++.+|||||||||+|||||+.+|++|
T Consensus 83 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~ll 162 (224)
T 2pcj_A 83 KLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILL 162 (224)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEE
T ss_pred cEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 79999999999999999999988654322 1234567899999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 161 LLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 161 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
||||||++||+.+++.+.+++++++++|.|||++|||++.+ ..+|
T Consensus 163 lLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d 207 (224)
T 2pcj_A 163 FADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTH 207 (224)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSS
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCC
Confidence 99999999999999999999999977799999999999876 5554
No 2
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=2.1e-56 Score=398.19 Aligned_cols=200 Identities=24% Similarity=0.320 Sum_probs=178.0
Q ss_pred CCCcEEEEeEEEEeCC----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchh--
Q 027067 7 PLPRLLLKNVSCMRNA----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF-- 80 (229)
Q Consensus 7 ~~~~l~l~~l~~~~~~----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~-- 80 (229)
..++|+++||+++|++ .++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++...+..
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~ 100 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHH
T ss_pred CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 3468999999999953 5799999999999999999999999999999999999999999999999999765432
Q ss_pred hhhhhcceEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhc
Q 027067 81 HQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAI 155 (229)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~ 155 (229)
...+++++|++|++.+++.+||+||+.++....+. ..++.++++.+||.+..++++.+|||||||||+|||||+.
T Consensus 101 ~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~ 180 (366)
T 3tui_C 101 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALAS 180 (366)
T ss_dssp HHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTT
T ss_pred HHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhc
Confidence 22456899999999999999999999987654322 2346788999999999999999999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067 156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~ 206 (229)
+|++|||||||++||+.+++.+.++++++++ .|.|||+||||++.+...+|
T Consensus 181 ~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aD 232 (366)
T 3tui_C 181 NPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICD 232 (366)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCS
T ss_pred CCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCC
Confidence 9999999999999999999999999999865 49999999999999988764
No 3
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=7.4e-57 Score=384.84 Aligned_cols=198 Identities=25% Similarity=0.331 Sum_probs=176.8
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
++|+++||+++|+++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.........+..++
T Consensus 6 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 85 (257)
T 1g6h_A 6 EILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIV 85 (257)
T ss_dssp EEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEE
T ss_pred cEEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999865433233456799
Q ss_pred EeecccccCCCCCHHHhHHHHHHh--cC------------c----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHH
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEVL--EG------------K----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLA 150 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~~--~~------------~----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lA 150 (229)
|++|++.+++.+||.||+.++... .+ . ..++.++++.+++.+..++++.+|||||||||+||
T Consensus 86 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iA 165 (257)
T 1g6h_A 86 RTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIG 165 (257)
T ss_dssp ECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHH
T ss_pred EEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHH
Confidence 999999999999999999875322 11 1 12356789999999999999999999999999999
Q ss_pred HHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 151 RLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 151 ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|||+.+|++|||||||+|||+.+++.+.+++++++++|+|||++|||++++...+|
T Consensus 166 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d 221 (257)
T 1g6h_A 166 RALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYID 221 (257)
T ss_dssp HHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCS
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCC
Confidence 99999999999999999999999999999999987779999999999999888765
No 4
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=2.5e-56 Score=382.83 Aligned_cols=198 Identities=25% Similarity=0.363 Sum_probs=175.8
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCC-Cchhhhhhhcc
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQ-SGIFHQYKLQL 87 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~~~~ 87 (229)
++|+++||+++|+++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.. .......++.+
T Consensus 23 ~~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i 102 (263)
T 2olj_A 23 QMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEV 102 (263)
T ss_dssp CSEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHE
T ss_pred heEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcE
Confidence 47999999999999999999999999999999999999999999999999999999999999999851 11112345679
Q ss_pred eEeecccccCCCCCHHHhHHHHH-HhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEE
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFE-VLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWL 161 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~-~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ill 161 (229)
+|++|++.+++.+||.||+.++. ...+. ..++.++++.+++.+..++++.+|||||||||+|||||+.+|++||
T Consensus 103 ~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lll 182 (263)
T 2olj_A 103 GMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIML 182 (263)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEE
Confidence 99999999999999999998853 22221 2345678999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 162 LDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 162 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|||||++||+.+++.+.+++++++++|+|||++|||++++...+|
T Consensus 183 LDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d 227 (263)
T 2olj_A 183 FDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGD 227 (263)
T ss_dssp EESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCS
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCC
Confidence 999999999999999999999997779999999999999988765
No 5
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=6.2e-56 Score=379.05 Aligned_cols=196 Identities=23% Similarity=0.403 Sum_probs=177.1
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
++|+++||+++|+++++|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++... ....++.++
T Consensus 14 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~--~~~~~~~i~ 91 (256)
T 1vpl_A 14 GAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE--PHEVRKLIS 91 (256)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC--HHHHHTTEE
T ss_pred CeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcc--HHHHhhcEE
Confidence 679999999999999999999999999999999999999999999999999999999999999998652 133456799
Q ss_pred EeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEe
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLD 163 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlD 163 (229)
|++|++.+++.+||.||+.++...... ..++.++++.+++.+..++++.+|||||||||+|||||+.+|++||||
T Consensus 92 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLD 171 (256)
T 1vpl_A 92 YLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILD 171 (256)
T ss_dssp EECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 999999999999999999886533221 134567899999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 164 EPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 164 EPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|||++||+.+++.+.+++++++++|+|||++|||++++...+|
T Consensus 172 EPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d 214 (256)
T 1vpl_A 172 EPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCD 214 (256)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCS
T ss_pred CCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCC
Confidence 9999999999999999999998779999999999999988665
No 6
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.3e-56 Score=377.30 Aligned_cols=198 Identities=20% Similarity=0.298 Sum_probs=174.4
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
++++++||+++|+++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.........+..++
T Consensus 5 ~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 84 (240)
T 1ji0_A 5 IVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIA 84 (240)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEE
T ss_pred ceEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEE
Confidence 48999999999999999999999999999999999999999999999999999999999999999865443222344699
Q ss_pred EeecccccCCCCCHHHhHHHHHHhcCc----cccHHHHHHHh-CCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEe
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEVLEGK----QGNSLPALELM-GLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLD 163 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~----~~~~~~~l~~~-~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlD 163 (229)
|++|++.+++.+||.||+.++...... ...+.++++.+ ++.+..++++.+|||||||||+|||||+.+|++||||
T Consensus 85 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLD 164 (240)
T 1ji0_A 85 LVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMD 164 (240)
T ss_dssp EECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 999999999999999999875311111 12345678888 4888889999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 164 EPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 164 EPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|||++||+.+++.+.+++++++++|+|||++|||++++...+|
T Consensus 165 EPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d 207 (240)
T 1ji0_A 165 EPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAH 207 (240)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCS
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCC
Confidence 9999999999999999999987779999999999999888775
No 7
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=2.8e-56 Score=382.30 Aligned_cols=198 Identities=27% Similarity=0.383 Sum_probs=176.0
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCC----------Cc
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQ----------SG 78 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~----------~~ 78 (229)
++|+++||+++|+++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.. ..
T Consensus 5 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 84 (262)
T 1b0u_A 5 NKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD 84 (262)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred ceEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccC
Confidence 47999999999999999999999999999999999999999999999999999999999999999851 11
Q ss_pred h--hhhhhhcceEeecccccCCCCCHHHhHHHHH-HhcCc-----cccHHHHHHHhCCChh-hcCCCCCCChhHHHHHHH
Q 027067 79 I--FHQYKLQLNWLSLKDAVKEKFTVLDNVQWFE-VLEGK-----QGNSLPALELMGLGRL-AKEKARMLSMGQRKRLQL 149 (229)
Q Consensus 79 ~--~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~-~~~~~-----~~~~~~~l~~~~l~~~-~~~~~~~LSgGqkqRv~l 149 (229)
. ....++.++|++|++.+++.+||.||+.++. ...+. ..++.++++.+++.+. .++++.+|||||||||+|
T Consensus 85 ~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~l 164 (262)
T 1b0u_A 85 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSI 164 (262)
T ss_dssp HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHH
T ss_pred hhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHH
Confidence 1 1224567999999999999999999998853 22211 2345678999999998 999999999999999999
Q ss_pred HHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 150 ARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 150 Aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
||||+.+|++|||||||+|||+.+++.+.+++++++++|.|||+||||++++...+|
T Consensus 165 AraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d 221 (262)
T 1b0u_A 165 ARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSS 221 (262)
T ss_dssp HHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCS
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence 999999999999999999999999999999999987779999999999999988765
No 8
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=7.2e-56 Score=374.18 Aligned_cols=196 Identities=27% Similarity=0.351 Sum_probs=169.9
Q ss_pred cEEEEeEEEEeCC----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhh---
Q 027067 10 RLLLKNVSCMRNA----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQ--- 82 (229)
Q Consensus 10 ~l~l~~l~~~~~~----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~--- 82 (229)
+|+++||+++|++ +++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++........
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 5899999999963 469999999999999999999999999999999999999999999999999876543221
Q ss_pred hhhcceEeecccccCCCCCHHHhHHHHHHhc---Cc-----cccHHHHHHHhCCChh-hcCCCCCCChhHHHHHHHHHHH
Q 027067 83 YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLE---GK-----QGNSLPALELMGLGRL-AKEKARMLSMGQRKRLQLARLL 153 (229)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~---~~-----~~~~~~~l~~~~l~~~-~~~~~~~LSgGqkqRv~lAral 153 (229)
.+..++|++|++.+++.+||.||+.+..... .. ..++.++++.+++.+. .++++.+|||||||||+|||||
T Consensus 81 ~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral 160 (235)
T 3tif_A 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARAL 160 (235)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred hhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 2346999999999999999999998864332 11 1235678899999875 4999999999999999999999
Q ss_pred hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
+.+|++|||||||++||+.+++.+.+++++++++ |+|||+||||++.+ ..+|
T Consensus 161 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d 213 (235)
T 3tif_A 161 ANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGE 213 (235)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSS
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCC
Confidence 9999999999999999999999999999998655 99999999999854 4444
No 9
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=6.9e-56 Score=382.34 Aligned_cols=198 Identities=25% Similarity=0.344 Sum_probs=173.4
Q ss_pred CcEEEEeEEEEeCC-eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCc-hhhhhhhc
Q 027067 9 PRLLLKNVSCMRNA-QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG-IFHQYKLQ 86 (229)
Q Consensus 9 ~~l~l~~l~~~~~~-~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~-~~~~~~~~ 86 (229)
++|+++||+++|++ +++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.... .....++.
T Consensus 6 ~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 85 (275)
T 3gfo_A 6 YILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRES 85 (275)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHS
T ss_pred cEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCc
Confidence 58999999999975 56999999999999999999999999999999999999999999999999985321 11235678
Q ss_pred ceEeecccc-cCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeE
Q 027067 87 LNWLSLKDA-VKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIW 160 (229)
Q Consensus 87 ~~~~~~~~~-~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~il 160 (229)
++|++|++. .+..+||+||+.++....+. ..++.++++.+++.++.++++.+|||||||||+|||||+.+|++|
T Consensus 86 ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lL 165 (275)
T 3gfo_A 86 IGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVL 165 (275)
T ss_dssp EEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999863 34478999999987543321 234667899999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEeCChhhHHhhhc
Q 027067 161 LLDEPSVALDYDGVRLLEYIIAEHR-KKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 161 llDEPt~~LD~~~~~~l~~~l~~~~-~~g~tii~vtH~~~~~~~~~~ 206 (229)
||||||+|||+.+++.+.+++++++ ++|.|||+||||++++...+|
T Consensus 166 lLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d 212 (275)
T 3gfo_A 166 ILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCD 212 (275)
T ss_dssp EEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCS
T ss_pred EEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCC
Confidence 9999999999999999999999986 569999999999999988765
No 10
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=9.9e-56 Score=395.88 Aligned_cols=194 Identities=26% Similarity=0.396 Sum_probs=177.5
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW 89 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 89 (229)
+|+++||+|+|+++++|+||||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++..... ..+.++|
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~---~~r~ig~ 79 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP---AERGVGM 79 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG---GGSCEEE
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCH---HHCCEEE
Confidence 5999999999999999999999999999999999999999999999999999999999999999876543 3467999
Q ss_pred eecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeC
Q 027067 90 LSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDE 164 (229)
Q Consensus 90 ~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDE 164 (229)
++|++.+++.+||.||+.++....+. ..++.++++.+++.++.+++|.+|||||||||+|||||+.+|++|||||
T Consensus 80 VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDE 159 (381)
T 3rlf_A 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDE 159 (381)
T ss_dssp ECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEES
T ss_pred EecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999999999987654332 2346788999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 165 PSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 165 Pt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
||++||+..++.+.+.+++++++ |.|+|+||||++++...+|
T Consensus 160 Pts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aD 202 (381)
T 3rlf_A 160 PLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLAD 202 (381)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCS
T ss_pred CCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCC
Confidence 99999999999999999998654 9999999999999988764
No 11
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.4e-55 Score=378.87 Aligned_cols=199 Identities=24% Similarity=0.288 Sum_probs=178.2
Q ss_pred CCCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067 7 PLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ 86 (229)
Q Consensus 7 ~~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 86 (229)
+.++|+++||++.|+++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++..... ...++.
T Consensus 8 ~~~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~-~~~~~~ 86 (266)
T 4g1u_C 8 PVALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQP-KALART 86 (266)
T ss_dssp CCCEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCH-HHHHHH
T ss_pred CcceEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCH-HHHhhe
Confidence 3468999999999999999999999999999999999999999999999999999999999999999976543 234567
Q ss_pred ceEeecccccCCCCCHHHhHHHHHHhcC---ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhc------CC
Q 027067 87 LNWLSLKDAVKEKFTVLDNVQWFEVLEG---KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAI------DR 157 (229)
Q Consensus 87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~------~p 157 (229)
++|++|++.+++.+||.||+.++..... ...++.++++.+++.+..++++.+|||||||||+|||||+. +|
T Consensus 87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p 166 (266)
T 4g1u_C 87 RAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTP 166 (266)
T ss_dssp EEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCC
T ss_pred EEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCC
Confidence 8999999998889999999988643221 12346788999999999999999999999999999999999 99
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 158 PIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
++|||||||+|||+.+++.+.+++++++++ ++|||+||||++++...+|
T Consensus 167 ~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d 216 (266)
T 4g1u_C 167 RWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYAD 216 (266)
T ss_dssp EEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCS
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCC
Confidence 999999999999999999999999998765 5799999999999988765
No 12
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=9.6e-56 Score=393.39 Aligned_cols=197 Identities=29% Similarity=0.372 Sum_probs=174.2
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCc-hhhhhhhcce
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG-IFHQYKLQLN 88 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~-~~~~~~~~~~ 88 (229)
+|+++||+++|+++++|+||||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... .....+++++
T Consensus 4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig 83 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLG 83 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCE
T ss_pred EEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEE
Confidence 799999999999999999999999999999999999999999999999999999999999999983211 1122456799
Q ss_pred EeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEe
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLD 163 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlD 163 (229)
|++|++.+++.+||+||+.++....+. ..++.++++.++|.++.++++.+|||||||||+|||||+.+|++||||
T Consensus 84 ~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLD 163 (359)
T 3fvq_A 84 YLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLD 163 (359)
T ss_dssp EECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 999999999999999999986433221 234678899999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHH-HhCCcEEEEEeCChhhHHhhhc
Q 027067 164 EPSVALDYDGVRLLEYIIAEH-RKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 164 EPt~~LD~~~~~~l~~~l~~~-~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|||++||+..++.+.+.+.++ ++.|.|+|+||||++++...+|
T Consensus 164 EPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aD 207 (359)
T 3fvq_A 164 EPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYAD 207 (359)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCS
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCC
Confidence 999999999999998766664 5679999999999999988765
No 13
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=4.7e-55 Score=388.77 Aligned_cols=196 Identities=27% Similarity=0.349 Sum_probs=177.3
Q ss_pred CCcEEEEeEEEEe-CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067 8 LPRLLLKNVSCMR-NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ 86 (229)
Q Consensus 8 ~~~l~l~~l~~~~-~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 86 (229)
.++|+++||+++| +++++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... ..++.
T Consensus 12 ~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~---~~~r~ 88 (355)
T 1z47_A 12 SMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLP---PQKRN 88 (355)
T ss_dssp CEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCC---GGGSS
T ss_pred CceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCC---hhhCc
Confidence 4589999999999 8888999999999999999999999999999999999999999999999999986543 23567
Q ss_pred ceEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEE
Q 027067 87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWL 161 (229)
Q Consensus 87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ill 161 (229)
++|++|++.+++.+||+||+.|+....+. ..++.++++.+++.++.++++.+|||||||||+|||||+.+|++||
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLL 168 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLL 168 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999999999999987544321 2346788999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 162 LDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 162 lDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
|||||++||+..++.+.+.|++++++ |.|+|+||||++++...+|
T Consensus 169 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~ad 214 (355)
T 1z47_A 169 FDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVAD 214 (355)
T ss_dssp EESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCS
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCC
Confidence 99999999999999999999998654 8999999999999988765
No 14
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=1.7e-55 Score=367.19 Aligned_cols=190 Identities=31% Similarity=0.465 Sum_probs=172.4
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
.+|+++||+++|++ ++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++. ..+..++
T Consensus 9 ~~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~------~~~~~i~ 81 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT------KVKGKIF 81 (214)
T ss_dssp CEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG------GGGGGEE
T ss_pred ceEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh------hhcCcEE
Confidence 57999999999998 9999999999999999999999999999999999999999999999999875 1356799
Q ss_pred EeecccccCCCCCHHHhHHHHHHhcC---ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCC
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEVLEG---KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEP 165 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEP 165 (229)
|++|++.+++.+||.||+.++..... ...++.++++.+++.+. ++++.+|||||||||+|||||+.+|++||||||
T Consensus 82 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEP 160 (214)
T 1sgw_A 82 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDP 160 (214)
T ss_dssp EECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEEST
T ss_pred EEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 99999999999999999988654322 12346788999999888 999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 166 SVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 166 t~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|++||+.+++.+.+++++++++|+|||++|||++++..++|
T Consensus 161 ts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d 201 (214)
T 1sgw_A 161 VVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNE 201 (214)
T ss_dssp TTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEE
T ss_pred CcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999987668999999999998887765
No 15
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=8.7e-55 Score=387.73 Aligned_cols=194 Identities=23% Similarity=0.289 Sum_probs=175.8
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW 89 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 89 (229)
+|+++||+++|+++++|+++||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++..... .+++++|
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~---~~r~ig~ 79 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPP---KYREVGM 79 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG---GGTTEEE
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCCh---hhCcEEE
Confidence 5999999999999999999999999999999999999999999999999999999999999999875432 3467999
Q ss_pred eecccccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeC
Q 027067 90 LSLKDAVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDE 164 (229)
Q Consensus 90 ~~~~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDE 164 (229)
++|++.+++.+||+||+.|+....+ ...++.++++.+++.++.++++.+|||||||||+|||||+.+|++|||||
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDE 159 (359)
T 2yyz_A 80 VFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDE 159 (359)
T ss_dssp ECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 9999999999999999998643222 12346789999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 165 PSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 165 Pt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
||++||+..++.+.+.+++++++ |.|+|+||||++++...+|
T Consensus 160 P~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~ad 202 (359)
T 2yyz_A 160 PLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMAS 202 (359)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCS
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCC
Confidence 99999999999999999998654 8999999999999988765
No 16
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=8.8e-55 Score=386.40 Aligned_cols=193 Identities=24% Similarity=0.341 Sum_probs=175.3
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW 89 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 89 (229)
||+++||+++|+++ +|+++||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... ..+++++|
T Consensus 1 ml~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~---~~~r~ig~ 76 (348)
T 3d31_A 1 MIEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLS---PEKHDIAF 76 (348)
T ss_dssp CEEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSC---HHHHTCEE
T ss_pred CEEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCc---hhhCcEEE
Confidence 58999999999988 999999999999999999999999999999999999999999999999986533 23568999
Q ss_pred eecccccCCCCCHHHhHHHHHHhcCc--cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCC
Q 027067 90 LSLKDAVKEKFTVLDNVQWFEVLEGK--QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSV 167 (229)
Q Consensus 90 ~~~~~~~~~~~tv~e~l~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~ 167 (229)
++|++.+++.+||+||+.++....+. ..++.++++.+++.++.++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 77 v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s 156 (348)
T 3d31_A 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLS 156 (348)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSST
T ss_pred EecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccc
Confidence 99999999999999999987543221 2456789999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067 168 ALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 168 ~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~ 206 (229)
+||+..++.+.+.++++++ .|.|+|+||||++++...+|
T Consensus 157 ~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~ad 196 (348)
T 3d31_A 157 ALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMAD 196 (348)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCS
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 9999999999999999865 48999999999999888765
No 17
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.2e-54 Score=387.30 Aligned_cols=194 Identities=25% Similarity=0.323 Sum_probs=176.0
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW 89 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 89 (229)
+|+++||+++|+++++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++..... .+++++|
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~---~~r~ig~ 79 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPP---KDRNVGL 79 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG---GGTTEEE
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCH---hHCcEEE
Confidence 5999999999999899999999999999999999999999999999999999999999999999875432 2467999
Q ss_pred eecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeC
Q 027067 90 LSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDE 164 (229)
Q Consensus 90 ~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDE 164 (229)
++|++.+++.+||+||+.++....+. ..++.++++.+++.++.++++.+|||||||||+|||||+.+|++|||||
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE 159 (362)
T 2it1_A 80 VFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDE 159 (362)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999999999987543321 2346788999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 165 PSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 165 Pt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
||++||+..++.+.+.+++++++ |.|+|+||||++++...+|
T Consensus 160 P~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~ad 202 (362)
T 2it1_A 160 PLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMAD 202 (362)
T ss_dssp GGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCS
T ss_pred ccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCC
Confidence 99999999999999999998654 8999999999999887764
No 18
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=2.2e-54 Score=387.04 Aligned_cols=194 Identities=26% Similarity=0.363 Sum_probs=175.2
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCC------Cchhhhh
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQ------SGIFHQY 83 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~------~~~~~~~ 83 (229)
+|+++||+++|+++++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.. .. ..
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~---~~ 79 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVP---PK 79 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECC---GG
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCC---Hh
Confidence 5999999999999999999999999999999999999999999999999999999999999998754 22 13
Q ss_pred hhcceEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCC
Q 027067 84 KLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRP 158 (229)
Q Consensus 84 ~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 158 (229)
+++++|++|++.+++.+||+||+.|+....+. ..++.++++.++|.++.++++.+|||||||||+|||||+.+|+
T Consensus 80 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~ 159 (372)
T 1g29_1 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQ 159 (372)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCS
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 46799999999999999999999987544321 2346788999999999999999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 159 IWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 159 illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
+|||||||++||+..++.+.+.+++++++ |.|+|+||||++++...+|
T Consensus 160 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~ad 208 (372)
T 1g29_1 160 VFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGD 208 (372)
T ss_dssp EEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCS
T ss_pred EEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCC
Confidence 99999999999999999999999998654 8999999999999988764
No 19
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=2.3e-54 Score=386.60 Aligned_cols=194 Identities=27% Similarity=0.345 Sum_probs=169.1
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW 89 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 89 (229)
+|+++||+++|+++++|+++||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++..... .+++++|
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~---~~r~ig~ 87 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPP---KDRNISM 87 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG---GGGTEEE
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCCh---hhCcEEE
Confidence 5999999999999999999999999999999999999999999999999999999999999999875432 3467999
Q ss_pred eecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeC
Q 027067 90 LSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDE 164 (229)
Q Consensus 90 ~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDE 164 (229)
++|++.+++.+||+||+.|+....+. ..++.++++.++|.++.++++.+|||||||||+|||||+.+|++|||||
T Consensus 88 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE 167 (372)
T 1v43_A 88 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDE 167 (372)
T ss_dssp EEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEES
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99999999999999999986432211 2346788999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 165 PSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 165 Pt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
||++||+..++.+.+.+++++++ |.|+|+||||++++...+|
T Consensus 168 P~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~ad 210 (372)
T 1v43_A 168 PLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGD 210 (372)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCS
T ss_pred CCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999998654 8999999999999987765
No 20
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=2e-54 Score=368.42 Aligned_cols=195 Identities=24% Similarity=0.268 Sum_probs=167.0
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCC--CCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGF--SKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl--~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
+|+++||+++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|+++|+++.........+..+
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i 82 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGL 82 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTB
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcE
Confidence 69999999999999999999999999999999999999999999999999 7899999999999987544322234458
Q ss_pred eEeecccccCCCCCHHHhHHHHHH-hcC---c----cccHHHHHHHhCC-ChhhcCCCCC-CChhHHHHHHHHHHHhcCC
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFEV-LEG---K----QGNSLPALELMGL-GRLAKEKARM-LSMGQRKRLQLARLLAIDR 157 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~~-~~~---~----~~~~~~~l~~~~l-~~~~~~~~~~-LSgGqkqRv~lAral~~~p 157 (229)
+|++|++.+++.+|+.||+.+... ... . ..++.++++.+++ .+..++++.+ |||||||||+|||||+.+|
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p 162 (250)
T 2d2e_A 83 FLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEP 162 (250)
T ss_dssp CCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCC
T ss_pred EEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCC
Confidence 899999999999999999987542 111 0 1245678999999 5788999999 9999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067 158 PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA 204 (229)
Q Consensus 158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~ 204 (229)
++|||||||++||+.+++.+.+++++++++|+|||++|||++++..+
T Consensus 163 ~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~ 209 (250)
T 2d2e_A 163 TYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYI 209 (250)
T ss_dssp SEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTS
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh
Confidence 99999999999999999999999999876789999999999988775
No 21
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=6.9e-55 Score=376.85 Aligned_cols=199 Identities=23% Similarity=0.331 Sum_probs=171.1
Q ss_pred CCCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCC--CCchhhhhh
Q 027067 7 PLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDIT--QSGIFHQYK 84 (229)
Q Consensus 7 ~~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~--~~~~~~~~~ 84 (229)
..++|+++||+++|+++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. .... ...+
T Consensus 18 ~~~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~-~~~~ 96 (279)
T 2ihy_A 18 SHMLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSA-ETVR 96 (279)
T ss_dssp -CEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCH-HHHH
T ss_pred CCceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCH-HHHc
Confidence 345799999999999999999999999999999999999999999999999999999999999999875 3322 2345
Q ss_pred hcceEeecccccC--CCCCHHHhHHHHHH----hcC--c---cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHH
Q 027067 85 LQLNWLSLKDAVK--EKFTVLDNVQWFEV----LEG--K---QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLL 153 (229)
Q Consensus 85 ~~~~~~~~~~~~~--~~~tv~e~l~~~~~----~~~--~---~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral 153 (229)
+.++|++|++.++ ..+||+||+.+... ... . ..++.++++.+++.+..++++.+|||||||||+|||||
T Consensus 97 ~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL 176 (279)
T 2ihy_A 97 QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARAL 176 (279)
T ss_dssp TTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHH
Confidence 6799999987643 34699999987421 011 1 12456789999999999999999999999999999999
Q ss_pred hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEE--EEEeCChhhHHhhhc
Q 027067 154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIV--IVATHLPIQIEDAMN 206 (229)
Q Consensus 154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~ti--i~vtH~~~~~~~~~~ 206 (229)
+.+|++|||||||++||+.+++.+.+++++++++|+|| |+||||++++...+|
T Consensus 177 ~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d 231 (279)
T 2ihy_A 177 MGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFS 231 (279)
T ss_dssp HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCC
T ss_pred hCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCC
Confidence 99999999999999999999999999999987668999 999999998877664
No 22
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.2e-54 Score=386.48 Aligned_cols=197 Identities=26% Similarity=0.392 Sum_probs=174.8
Q ss_pred cEEEEeEEEEeCCee--eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCc--hhhhhhh
Q 027067 10 RLLLKNVSCMRNAQQ--ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG--IFHQYKL 85 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~--iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~--~~~~~~~ 85 (229)
+|+++||+++|++++ +|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... .....++
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r 82 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhC
Confidence 699999999999888 999999999999999999999999999999999999999999999999875310 0112356
Q ss_pred cceEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeE
Q 027067 86 QLNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIW 160 (229)
Q Consensus 86 ~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~il 160 (229)
+++|++|++.+++.+||+||+.++....+. ..++.++++.+++.++.++++.+|||||||||+|||||+.+|++|
T Consensus 83 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lL 162 (353)
T 1oxx_K 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLL 162 (353)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred CEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 799999999999999999999986433221 234678899999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067 161 LLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 161 llDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~ 206 (229)
||||||++||+..++.+.+.++++++ .|.|+|+||||++++...+|
T Consensus 163 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~ad 209 (353)
T 1oxx_K 163 LLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIAD 209 (353)
T ss_dssp EEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCS
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999999999865 48999999999999988765
No 23
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=4.3e-54 Score=369.48 Aligned_cols=193 Identities=26% Similarity=0.406 Sum_probs=171.1
Q ss_pred cEEEEeEEEEeC--C---eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhh
Q 027067 10 RLLLKNVSCMRN--A---QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK 84 (229)
Q Consensus 10 ~l~l~~l~~~~~--~---~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~ 84 (229)
+|+++||+++|+ + +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++... ..+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~----~~~ 77 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY----EIR 77 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH----HHG
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH----Hhh
Confidence 699999999997 5 6899999999999999999999999999999999999999999999999987531 345
Q ss_pred hcceEeeccc-ccCCCCCHHHhHHHHHHh--cC--ccccHHHHHHHhCCC--hhhcCCCCCCChhHHHHHHHHHHHhcCC
Q 027067 85 LQLNWLSLKD-AVKEKFTVLDNVQWFEVL--EG--KQGNSLPALELMGLG--RLAKEKARMLSMGQRKRLQLARLLAIDR 157 (229)
Q Consensus 85 ~~~~~~~~~~-~~~~~~tv~e~l~~~~~~--~~--~~~~~~~~l~~~~l~--~~~~~~~~~LSgGqkqRv~lAral~~~p 157 (229)
..++|++|++ ..++.+||.||+.++... .. ...++.++++.+|+. +..++++.+|||||||||+|||||+.+|
T Consensus 78 ~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p 157 (266)
T 2yz2_A 78 RNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEP 157 (266)
T ss_dssp GGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred hhEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCC
Confidence 6799999985 466778999999875321 11 123467889999999 9999999999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 158 PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
++|||||||++||+.+++.+.+++++++++|.|||++|||++.+...+|
T Consensus 158 ~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d 206 (266)
T 2yz2_A 158 DILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVD 206 (266)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCS
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence 9999999999999999999999999987679999999999999887664
No 24
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=2.1e-54 Score=366.31 Aligned_cols=191 Identities=26% Similarity=0.319 Sum_probs=169.8
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW 89 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 89 (229)
|++++||+++|++ +|+|+||+|++ |+++|+||||||||||+|+|+|+++|++|+|+++|+++.... ..+++++|
T Consensus 1 ml~~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~---~~~~~i~~ 74 (240)
T 2onk_A 1 MFLKVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP---PERRGIGF 74 (240)
T ss_dssp CCEEEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC---TTTSCCBC
T ss_pred CEEEEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc---hhhCcEEE
Confidence 4789999999976 49999999999 999999999999999999999999999999999999986432 23457999
Q ss_pred eecccccCCCCCHHHhHHHHHHhcC---ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCC
Q 027067 90 LSLKDAVKEKFTVLDNVQWFEVLEG---KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPS 166 (229)
Q Consensus 90 ~~~~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt 166 (229)
++|++.+++.+||.||+.++..... ...++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 75 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt 154 (240)
T 2onk_A 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPL 154 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTT
T ss_pred EcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 9999999999999999987532211 1234667899999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067 167 VALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 167 ~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~ 206 (229)
+|||+.+++.+.+++.++++ .|+|||++|||++++...+|
T Consensus 155 s~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d 195 (240)
T 2onk_A 155 SAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLAD 195 (240)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCS
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999865 48999999999999988765
No 25
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=8.4e-54 Score=367.88 Aligned_cols=198 Identities=20% Similarity=0.243 Sum_probs=169.1
Q ss_pred CCCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCC--CCCCccEEEEcCEeCCCCchhhhhh
Q 027067 7 PLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGF--SKPSAGEILWNGHDITQSGIFHQYK 84 (229)
Q Consensus 7 ~~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl--~~p~~G~I~~~g~~~~~~~~~~~~~ 84 (229)
..++|+++||+++|+++++|+||||+|++||+++|+||||||||||+|+|+|+ ++|++|+|+++|+++.........+
T Consensus 17 ~~~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 17 GSHMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp ---CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred CCceEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 44689999999999999999999999999999999999999999999999999 4689999999999986543222223
Q ss_pred hcceEeecccccCCCCCHHHhHHHHHH-h---cC----c----cccHHHHHHHhCCC-hhhcCCCC-CCChhHHHHHHHH
Q 027067 85 LQLNWLSLKDAVKEKFTVLDNVQWFEV-L---EG----K----QGNSLPALELMGLG-RLAKEKAR-MLSMGQRKRLQLA 150 (229)
Q Consensus 85 ~~~~~~~~~~~~~~~~tv~e~l~~~~~-~---~~----~----~~~~~~~l~~~~l~-~~~~~~~~-~LSgGqkqRv~lA 150 (229)
..++|++|++.+++.+|+.||+.+... . .. . ..++.++++.+++. ...++++. +|||||||||+||
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iA 176 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDIL 176 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHH
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHH
Confidence 458999999999999999999976431 1 11 0 12356789999996 57888987 5999999999999
Q ss_pred HHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067 151 RLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA 204 (229)
Q Consensus 151 ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~ 204 (229)
|||+.+|++|||||||++||+.+++.+.+++++++++|+|||++|||++++...
T Consensus 177 raL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~ 230 (267)
T 2zu0_C 177 QMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYI 230 (267)
T ss_dssp HHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTS
T ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhh
Confidence 999999999999999999999999999999999876789999999999988764
No 26
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=6.2e-53 Score=358.70 Aligned_cols=190 Identities=26% Similarity=0.426 Sum_probs=164.4
Q ss_pred cEEEEeEEEEe--CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 10 RLLLKNVSCMR--NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 10 ~l~l~~l~~~~--~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
-++++||+++| +++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++..... ...+..+
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~-~~~~~~i 85 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADP-NWLRRQV 85 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCH-HHHHHHE
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCH-HHHHhcE
Confidence 48999999999 46789999999999999999999999999999999999999999999999999875432 2345679
Q ss_pred eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcC-----------CCCCCChhHHHHHHHHHHHhcC
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKE-----------KARMLSMGQRKRLQLARLLAID 156 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGqkqRv~lAral~~~ 156 (229)
+|++|++.+++ .||.||+.++.. .....++.++++.+++.++.++ ++.+|||||||||+|||||+.+
T Consensus 86 ~~v~Q~~~l~~-~tv~enl~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~ 163 (247)
T 2ff7_A 86 GVVLQDNVLLN-RSIIDNISLANP-GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN 163 (247)
T ss_dssp EEECSSCCCTT-SBHHHHHTTTCT-TCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTC
T ss_pred EEEeCCCcccc-ccHHHHHhccCC-CCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcC
Confidence 99999998886 599999987521 1122345677888888766554 4589999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067 157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~ 203 (229)
|++|||||||++||+.+++.+.+++++++ +|+|||++|||++.++.
T Consensus 164 p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~~~~ 209 (247)
T 2ff7_A 164 PKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLSTVKN 209 (247)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGGGTT
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHh
Confidence 99999999999999999999999999985 58999999999988764
No 27
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=5.1e-53 Score=360.45 Aligned_cols=184 Identities=27% Similarity=0.386 Sum_probs=165.9
Q ss_pred cEEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 10 RLLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 10 ~l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
+|+++||+++|+ ++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+ +..++
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~--------------~~~i~ 69 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV--------------YQSIG 69 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE--------------CSCEE
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE--------------eccEE
Confidence 799999999998 889999999999999999999999999999999999999999999982 23589
Q ss_pred EeecccccCCCCCHHHhHHHHHHhc-------Cc--cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCe
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEVLE-------GK--QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPI 159 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~~~-------~~--~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~i 159 (229)
|++|++.+++.+||.||+.++.... .. ..++.++++.+++.+..++++.+|||||||||+|||||+.+|++
T Consensus 70 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~l 149 (253)
T 2nq2_C 70 FVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKL 149 (253)
T ss_dssp EECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSE
T ss_pred EEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 9999999988999999998864211 11 13456789999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhcc
Q 027067 160 WLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 160 lllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~~ 207 (229)
|||||||++||+.+++.+.+++.+++++ |.|||++|||++++...+|.
T Consensus 150 llLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~ 198 (253)
T 2nq2_C 150 ILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANK 198 (253)
T ss_dssp EEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSE
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCE
Confidence 9999999999999999999999998776 89999999999999887653
No 28
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=3.7e-53 Score=364.66 Aligned_cols=196 Identities=22% Similarity=0.278 Sum_probs=166.2
Q ss_pred CCcEEEEeEEEEeCC---eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhh
Q 027067 8 LPRLLLKNVSCMRNA---QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK 84 (229)
Q Consensus 8 ~~~l~l~~l~~~~~~---~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~ 84 (229)
..+|+++||+++|++ +++|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++..... ..++
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~-~~~~ 92 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDH-HYLH 92 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCH-HHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCH-HHHh
Confidence 357999999999986 789999999999999999999999999999999999999999999999999864332 2345
Q ss_pred hcceEeecccccCCCCCHHHhHHHHHHhcCc-c--------ccHHHHHHHh--CCChhhcCCCCCCChhHHHHHHHHHHH
Q 027067 85 LQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK-Q--------GNSLPALELM--GLGRLAKEKARMLSMGQRKRLQLARLL 153 (229)
Q Consensus 85 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-~--------~~~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAral 153 (229)
.+++|++|++.+++ .||.||+.++...... . ....++++.+ |+....++++.+|||||||||+|||||
T Consensus 93 ~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL 171 (271)
T 2ixe_A 93 TQVAAVGQEPLLFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARAL 171 (271)
T ss_dssp HHEEEECSSCCCCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHH
T ss_pred ccEEEEecCCcccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHH
Confidence 67999999998887 5999999875321111 0 1123455666 677777889999999999999999999
Q ss_pred hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067 154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~ 206 (229)
+.+|++|||||||++||+.+++.+.+++.++++ +|+|||+||||++.+.. +|
T Consensus 172 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d 224 (271)
T 2ixe_A 172 IRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AH 224 (271)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CS
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CC
Confidence 999999999999999999999999999998754 48999999999998764 44
No 29
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=4.9e-53 Score=359.76 Aligned_cols=191 Identities=22% Similarity=0.282 Sum_probs=170.2
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW 89 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 89 (229)
+++++||+++ ++|+++||+|++||+++|+||||||||||+|+|+|+++|+ |+|+++|+++..... ...+..++|
T Consensus 4 ~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~-~~~~~~i~~ 77 (249)
T 2qi9_C 4 VMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSA-TKLALHRAY 77 (249)
T ss_dssp EEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCH-HHHHHHEEE
T ss_pred EEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCH-HHHhceEEE
Confidence 7999999987 6999999999999999999999999999999999999999 999999999854332 234567999
Q ss_pred eecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCC-------eEEE
Q 027067 90 LSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRP-------IWLL 162 (229)
Q Consensus 90 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~-------illl 162 (229)
++|++.+++.+||.||+.++........++.++++.+++.+..++++.+|||||||||+|||||+.+|+ +|||
T Consensus 78 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllL 157 (249)
T 2qi9_C 78 LSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLL 157 (249)
T ss_dssp ECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEE
T ss_pred ECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEE
Confidence 999999998999999998752111113456788999999999999999999999999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 163 DEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 163 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
||||+|||+.+++.+.+++++++++|+|||++|||++.+...+|
T Consensus 158 DEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d 201 (249)
T 2qi9_C 158 DEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAH 201 (249)
T ss_dssp SSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCS
T ss_pred ECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999999987779999999999999988765
No 30
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=3.1e-53 Score=359.58 Aligned_cols=193 Identities=25% Similarity=0.395 Sum_probs=165.6
Q ss_pred cEEEEeEEEEe-CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 10 RLLLKNVSCMR-NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 10 ~l~l~~l~~~~-~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
+++++||+++| +++++|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..... ..++..++
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-~~~~~~i~ 79 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISL-ENWRSQIG 79 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSC-SCCTTTCC
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCH-HHHHhhEE
Confidence 58999999999 67889999999999999999999999999999999999999999999999999865332 23456799
Q ss_pred EeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcC-----------CCCCCChhHHHHHHHHHHHhcCC
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKE-----------KARMLSMGQRKRLQLARLLAIDR 157 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGqkqRv~lAral~~~p 157 (229)
|++|++.+++ .||.||+.++........++.++++.+++.++.++ ++.+|||||||||+|||||+.+|
T Consensus 80 ~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p 158 (243)
T 1mv5_A 80 FVSQDSAIMA-GTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNP 158 (243)
T ss_dssp EECCSSCCCC-EEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEcCCCcccc-ccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCC
Confidence 9999998877 49999998752111123346678888888766544 46799999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 158 PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
++|||||||++||+.+++.+.+++.+++ +|+|||++|||++.+.. +|
T Consensus 159 ~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d 205 (243)
T 1mv5_A 159 KILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLSTIVD-AD 205 (243)
T ss_dssp SEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHHHHH-CS
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChHHHHh-CC
Confidence 9999999999999999999999999987 58999999999988764 43
No 31
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=9e-52 Score=361.38 Aligned_cols=191 Identities=27% Similarity=0.359 Sum_probs=165.2
Q ss_pred CcEEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 9 PRLLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 9 ~~l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
..|+++||+|+|+ ++++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++..... ..++.++
T Consensus 52 ~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~-~~~r~~i 130 (306)
T 3nh6_A 52 GRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQ-ASLRSHI 130 (306)
T ss_dssp CCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCH-HHHHHTE
T ss_pred CeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCH-HHHhcce
Confidence 4699999999995 6789999999999999999999999999999999999999999999999999987653 3467789
Q ss_pred eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhh-----------cCCCCCCChhHHHHHHHHHHHhcC
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLA-----------KEKARMLSMGQRKRLQLARLLAID 156 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral~~~ 156 (229)
+|++|++.+|. .||+||+.++.... ...+..++++.+++.++. .+++.+|||||||||+|||||+.+
T Consensus 131 ~~v~Q~~~lf~-~Tv~eNi~~~~~~~-~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~ 208 (306)
T 3nh6_A 131 GVVPQDTVLFN-DTIADNIRYGRVTA-GNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKA 208 (306)
T ss_dssp EEECSSCCCCS-EEHHHHHHTTSTTC-CHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred EEEecCCccCc-ccHHHHHHhhcccC-CHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhC
Confidence 99999998885 59999998754221 223455666666665443 456689999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067 157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~ 203 (229)
|+||||||||++||+.++..+.+.+.++.+ ++|+|+|||+++.+..
T Consensus 209 p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~~~~ 254 (306)
T 3nh6_A 209 PGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLSTVVN 254 (306)
T ss_dssp CSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHHHHHT
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChHHHHc
Confidence 999999999999999999999999998854 7899999999999877
No 32
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1e-51 Score=354.23 Aligned_cols=186 Identities=28% Similarity=0.368 Sum_probs=166.2
Q ss_pred cEEEEeEEEEeCC----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhh
Q 027067 10 RLLLKNVSCMRNA----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL 85 (229)
Q Consensus 10 ~l~l~~l~~~~~~----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 85 (229)
+|+++||+++|++ +++|+++||+|+ ||+++|+||||||||||+|+|+|++ |++|+|.++|+++... .. ++
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~---~~-~~ 74 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI---RN-YI 74 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC---SC-CT
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch---HH-hh
Confidence 5899999999987 789999999999 9999999999999999999999999 9999999999987532 12 45
Q ss_pred cce-EeecccccCCCCCHHHhHHHHHHhcC-ccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067 86 QLN-WLSLKDAVKEKFTVLDNVQWFEVLEG-KQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARLLAIDRPIWLL 162 (229)
Q Consensus 86 ~~~-~~~~~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~illl 162 (229)
.++ |++|++.+ .+|+.||+.++..... ...++.++++.+++. +..++++.+|||||||||+|||||+.+|++|||
T Consensus 75 ~i~~~v~Q~~~l--~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllL 152 (263)
T 2pjz_A 75 RYSTNLPEAYEI--GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGL 152 (263)
T ss_dssp TEEECCGGGSCT--TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred heEEEeCCCCcc--CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 789 99999877 7899999988654322 234567889999999 999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 163 DEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 163 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
||||++||+.+++.+.++++++++ |||++|||++++...+|
T Consensus 153 DEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~~~~~~~d 193 (263)
T 2pjz_A 153 DEPFENVDAARRHVISRYIKEYGK---EGILVTHELDMLNLYKE 193 (263)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGGGGGGCTT
T ss_pred ECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHHHHHHhcC
Confidence 999999999999999999988753 99999999999887776
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=3.4e-51 Score=350.38 Aligned_cols=190 Identities=23% Similarity=0.324 Sum_probs=162.1
Q ss_pred CcEEEEeEEEEeCC---eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhh
Q 027067 9 PRLLLKNVSCMRNA---QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL 85 (229)
Q Consensus 9 ~~l~l~~l~~~~~~---~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 85 (229)
++|+++||+++|++ +++|++|||+|++||+++|+||||||||||+|+|+|+++| +|+|+++|+++..... ...+.
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~-~~~~~ 93 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNR-NSIRS 93 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCH-HHHHT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCH-HHHhc
Confidence 57999999999976 4699999999999999999999999999999999999987 8999999999864332 23456
Q ss_pred cceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhh-----------cCCCCCCChhHHHHHHHHHHHh
Q 027067 86 QLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLA-----------KEKARMLSMGQRKRLQLARLLA 154 (229)
Q Consensus 86 ~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral~ 154 (229)
.++|++|++.+++ .||.||+.++.. .....+..++++.+++.+.. ++++.+|||||||||+|||||+
T Consensus 94 ~i~~v~Q~~~l~~-~tv~enl~~~~~-~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~ 171 (260)
T 2ghi_A 94 IIGIVPQDTILFN-ETIKYNILYGKL-DATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLL 171 (260)
T ss_dssp TEEEECSSCCCCS-EEHHHHHHTTCT-TCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHH
T ss_pred cEEEEcCCCcccc-cCHHHHHhccCC-CCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHH
Confidence 7999999998886 599999987421 11223455677777775442 3678899999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067 155 IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 155 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~ 203 (229)
.+|++|||||||++||+.+++.+.+++.++++ ++|||++|||++.+..
T Consensus 172 ~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~~~~ 219 (260)
T 2ghi_A 172 KDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLSTISS 219 (260)
T ss_dssp HCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGGSTT
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHh
Confidence 99999999999999999999999999999864 8999999999988754
No 34
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1e-49 Score=335.20 Aligned_cols=179 Identities=23% Similarity=0.329 Sum_probs=149.8
Q ss_pred CcEEEEeEEEEeC--CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067 9 PRLLLKNVSCMRN--AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ 86 (229)
Q Consensus 9 ~~l~l~~l~~~~~--~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 86 (229)
.+|+++||+++|+ ++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| .
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g--------------~ 70 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--------------R 70 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS--------------C
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC--------------E
Confidence 3799999999994 57899999999999999999999999999999999999999999999987 3
Q ss_pred ceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhh-----------cCCCCCCChhHHHHHHHHHHHhc
Q 027067 87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLA-----------KEKARMLSMGQRKRLQLARLLAI 155 (229)
Q Consensus 87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral~~ 155 (229)
++|++|++.+++. ||.||+.++... ......+.++.+++.+.. ++++.+|||||||||+|||||+.
T Consensus 71 i~~v~q~~~~~~~-tv~enl~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~ 147 (229)
T 2pze_A 71 ISFCSQFSWIMPG-TIKENIIFGVSY--DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYK 147 (229)
T ss_dssp EEEECSSCCCCSB-CHHHHHHTTSCC--CHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHS
T ss_pred EEEEecCCcccCC-CHHHHhhccCCc--ChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhc
Confidence 7899999988875 999999874211 111233455555554333 33468999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 156 DRPIWLLDEPSVALDYDGVRLLEYI-IAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 156 ~p~illlDEPt~~LD~~~~~~l~~~-l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
+|++|||||||++||+.+++.+.+. +..+. +|+|||++|||++.+.. +|
T Consensus 148 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~~~~-~d 197 (229)
T 2pze_A 148 DADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEHLKK-AD 197 (229)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHHHHH-CS
T ss_pred CCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChHHHHh-CC
Confidence 9999999999999999999999886 45554 47899999999988764 44
No 35
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.1e-50 Score=361.11 Aligned_cols=189 Identities=22% Similarity=0.272 Sum_probs=167.0
Q ss_pred CcEEEEeEEEEe--CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067 9 PRLLLKNVSCMR--NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ 86 (229)
Q Consensus 9 ~~l~l~~l~~~~--~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 86 (229)
..|+++||+|+| +++++|++|||+|++||+++|+||||||||||||+|+|+++ ++|+|+++|+++..... ..+++.
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~-~~~rr~ 95 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITL-EQWRKA 95 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCH-HHHHHT
T ss_pred CeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCCh-HHHhCC
Confidence 579999999999 67889999999999999999999999999999999999998 89999999999876543 335678
Q ss_pred ceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCC-----------CChhHHHHHHHHHHHhc
Q 027067 87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARM-----------LSMGQRKRLQLARLLAI 155 (229)
Q Consensus 87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----------LSgGqkqRv~lAral~~ 155 (229)
++|++|++.+++ .||+||+.++. .....++.++++.+++.++.++++.+ |||||||||+|||||+.
T Consensus 96 ig~v~Q~~~lf~-~tv~enl~~~~--~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~ 172 (390)
T 3gd7_A 96 FGVIPQKVFIFS-GTFRKNLDPNA--AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLS 172 (390)
T ss_dssp EEEESCCCCCCS-EEHHHHHCTTC--CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEcCCcccCc-cCHHHHhhhcc--ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhc
Confidence 999999999887 59999997432 11234567889999999999999998 99999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067 156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~ 203 (229)
+|++|||||||++||+..++.+.+.++++. .+.|+|++|||++.+..
T Consensus 173 ~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e~~~~ 219 (390)
T 3gd7_A 173 KAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIEAMLE 219 (390)
T ss_dssp TCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSGGGTT
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHHHHHh
Confidence 999999999999999999999999998764 47899999999876544
No 36
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.6e-49 Score=335.69 Aligned_cols=178 Identities=21% Similarity=0.270 Sum_probs=149.2
Q ss_pred cEEEEeEEEEeC--CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 10 RLLLKNVSCMRN--AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 10 ~l~l~~l~~~~~--~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
+++++||+++|+ ++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| .+
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g--------------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG--------------SV 68 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS--------------CE
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC--------------EE
Confidence 599999999997 57899999999999999999999999999999999999999999999988 27
Q ss_pred eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCCh-----------hhcCCCCCCChhHHHHHHHHHHHhcC
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGR-----------LAKEKARMLSMGQRKRLQLARLLAID 156 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqRv~lAral~~~ 156 (229)
+|++|++.+ +..||.||+.++... ......++++.+++.+ ..++++.+|||||||||+|||||+.+
T Consensus 69 ~~v~Q~~~~-~~~tv~enl~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~ 145 (237)
T 2cbz_A 69 AYVPQQAWI-QNDSLRENILFGCQL--EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSN 145 (237)
T ss_dssp EEECSSCCC-CSEEHHHHHHTTSCC--CTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred EEEcCCCcC-CCcCHHHHhhCcccc--CHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcC
Confidence 899998765 578999999875321 1122333444444321 24678999999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHH---HHHhCCcEEEEEeCChhhHHhhhc
Q 027067 157 RPIWLLDEPSVALDYDGVRLLEYIIA---EHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 157 p~illlDEPt~~LD~~~~~~l~~~l~---~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|++|||||||++||+.+++.+.+.+. .++ +|+|||++|||++.+. .+|
T Consensus 146 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~~~-~~d 196 (237)
T 2cbz_A 146 ADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSYLP-QVD 196 (237)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTTGG-GSS
T ss_pred CCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHHHH-hCC
Confidence 99999999999999999999998884 333 4899999999998875 344
No 37
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=2.7e-48 Score=365.72 Aligned_cols=192 Identities=29% Similarity=0.406 Sum_probs=166.4
Q ss_pred CcEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067 9 PRLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ 86 (229)
Q Consensus 9 ~~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 86 (229)
.+++++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. ...+.+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~-~~~~~~ 418 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTL-ASLRNQ 418 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCH-HHHHHT
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCH-HHHHhh
Confidence 46999999999973 789999999999999999999999999999999999999999999999999976543 345678
Q ss_pred ceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhc-----------CCCCCCChhHHHHHHHHHHHhc
Q 027067 87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAK-----------EKARMLSMGQRKRLQLARLLAI 155 (229)
Q Consensus 87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGqkqRv~lAral~~ 155 (229)
++|++|++.+++. |++||+.++.......++..++++.+++.++.+ +++.+||||||||++|||||+.
T Consensus 419 i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~ 497 (582)
T 3b60_A 419 VALVSQNVHLFND-TVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR 497 (582)
T ss_dssp EEEECSSCCCCSS-BHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred CeEEccCCcCCCC-CHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999998875 999999875311122344667777777765543 4568999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067 156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~ 203 (229)
+|++|||||||++||+.+++.+.+.++++.+ |+|+|++||+++.++.
T Consensus 498 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~ 544 (582)
T 3b60_A 498 DSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLSTIEQ 544 (582)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGGTTT
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHHHHh
Confidence 9999999999999999999999999999865 8999999999988764
No 38
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=2.6e-48 Score=365.85 Aligned_cols=194 Identities=27% Similarity=0.383 Sum_probs=167.3
Q ss_pred CcEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067 9 PRLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ 86 (229)
Q Consensus 9 ~~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 86 (229)
.+++++||+++|++ +++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. ..++.+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~-~~~~~~ 418 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKL-TNLRRH 418 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCH-HHHhcC
Confidence 46999999999974 689999999999999999999999999999999999999999999999999875443 345678
Q ss_pred ceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcC-----------CCCCCChhHHHHHHHHHHHhc
Q 027067 87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKE-----------KARMLSMGQRKRLQLARLLAI 155 (229)
Q Consensus 87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGqkqRv~lAral~~ 155 (229)
++|++|++.+++. |++||+.++.......++..++++.+++.++.++ ++.+||||||||++|||||+.
T Consensus 419 i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~ 497 (582)
T 3b5x_A 419 FALVSQNVHLFND-TIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLR 497 (582)
T ss_pred eEEEcCCCccccc-cHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHc
Confidence 9999999998875 9999998753111223456677888877665544 458999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
+|++|||||||++||+.+++.+.+.++++++ |+|+|++||+++.+.. +|
T Consensus 498 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~-~d 546 (582)
T 3b5x_A 498 DAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLSTIEQ-AD 546 (582)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHHHHh-CC
Confidence 9999999999999999999999999998864 8999999999998864 44
No 39
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=8.8e-48 Score=363.04 Aligned_cols=190 Identities=28% Similarity=0.359 Sum_probs=165.7
Q ss_pred EEEEeEEEEeCC---eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 11 LLLKNVSCMRNA---QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 11 l~l~~l~~~~~~---~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
++++||+++|++ +++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. ...+.++
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~-~~~~~~i 420 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNP-VWLRSKI 420 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCH-HHHHHSE
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCH-HHHHhce
Confidence 999999999974 479999999999999999999999999999999999999999999999999976543 3456789
Q ss_pred eEeecccccCCCCCHHHhHHHHHHhc--CccccHHHHHHHhCCChhhcC-----------CCCCCChhHHHHHHHHHHHh
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFEVLE--GKQGNSLPALELMGLGRLAKE-----------KARMLSMGQRKRLQLARLLA 154 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGqkqRv~lAral~ 154 (229)
+|++|++.+++. |++||+.++.... ...+++.++++.+++.++.++ ++.+||||||||++|||||+
T Consensus 421 ~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~ 499 (595)
T 2yl4_A 421 GTVSQEPILFSC-SIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALL 499 (595)
T ss_dssp EEECSSCCCCSS-BHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHH
T ss_pred EEEccCCcccCC-CHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHH
Confidence 999999998875 9999998854221 223456778888888655433 34899999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067 155 IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 155 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~ 203 (229)
.+|++|||||||++||+.+++.+.+.++++.+ ++|+|++||+++.++.
T Consensus 500 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~ 547 (595)
T 2yl4_A 500 KNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLSTIKN 547 (595)
T ss_dssp HCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHHHHHH
T ss_pred cCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHc
Confidence 99999999999999999999999999999865 8999999999998865
No 40
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=2.4e-47 Score=359.04 Aligned_cols=191 Identities=25% Similarity=0.397 Sum_probs=164.6
Q ss_pred CcEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067 9 PRLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ 86 (229)
Q Consensus 9 ~~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 86 (229)
..++++||+++|++ +++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..... ...+.+
T Consensus 338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~-~~~r~~ 416 (578)
T 4a82_A 338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLT-GSLRNQ 416 (578)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCH-HHHHHT
T ss_pred CeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCH-HHHhhh
Confidence 46999999999964 579999999999999999999999999999999999999999999999999876543 345778
Q ss_pred ceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcC-----------CCCCCChhHHHHHHHHHHHhc
Q 027067 87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKE-----------KARMLSMGQRKRLQLARLLAI 155 (229)
Q Consensus 87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGqkqRv~lAral~~ 155 (229)
++|++|++.+++. |++||+.++... ...++..++++.+++.++.++ ++.+||||||||++|||||+.
T Consensus 417 i~~v~Q~~~l~~~-tv~eni~~~~~~-~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~ 494 (578)
T 4a82_A 417 IGLVQQDNILFSD-TVKENILLGRPT-ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 494 (578)
T ss_dssp EEEECSSCCCCSS-BHHHHHGGGCSS-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred eEEEeCCCccCcc-cHHHHHhcCCCC-CCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHc
Confidence 9999999998876 999999875321 123345667777777555443 446999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067 156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~ 203 (229)
+|++|||||||++||+.+++.+.+.+++++ +++|+|++||+++.+..
T Consensus 495 ~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~ 541 (578)
T 4a82_A 495 NPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLSTITH 541 (578)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGGTTT
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHc
Confidence 999999999999999999999999998875 47899999999998865
No 41
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.1e-47 Score=360.76 Aligned_cols=191 Identities=23% Similarity=0.311 Sum_probs=166.5
Q ss_pred CcEEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 9 PRLLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 9 ~~l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
..++++||+++|+ ++++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. ...+.++
T Consensus 353 ~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~-~~~r~~i 431 (598)
T 3qf4_B 353 GEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKR-SSLRSSI 431 (598)
T ss_dssp CCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCH-HHHHHHE
T ss_pred CeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCH-HHHHhce
Confidence 3699999999996 4679999999999999999999999999999999999999999999999999976543 3467789
Q ss_pred eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCC-----------CCCChhHHHHHHHHHHHhcC
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKA-----------RMLSMGQRKRLQLARLLAID 156 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgGqkqRv~lAral~~~ 156 (229)
+|++|++.+++. |++||+.++... ...++..++++.+++.++.++.| .+||||||||++|||||+.+
T Consensus 432 ~~v~Q~~~lf~~-tv~eni~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~ 509 (598)
T 3qf4_B 432 GIVLQDTILFST-TVKENLKYGNPG-ATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLAN 509 (598)
T ss_dssp EEECTTCCCCSS-BHHHHHHSSSTT-CCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTC
T ss_pred EEEeCCCccccc-cHHHHHhcCCCC-CCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 999999988864 999999875321 12344566777777766666555 79999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067 157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~ 203 (229)
|++|||||||++||+.+++.+.+.+.++. +|+|+|+|||+++.+..
T Consensus 510 p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~ 555 (598)
T 3qf4_B 510 PKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNTIKN 555 (598)
T ss_dssp CSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHc
Confidence 99999999999999999999999999885 58999999999999876
No 42
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3e-47 Score=358.92 Aligned_cols=191 Identities=19% Similarity=0.269 Sum_probs=163.1
Q ss_pred CcEEEEeEEEEeC--CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067 9 PRLLLKNVSCMRN--AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ 86 (229)
Q Consensus 9 ~~l~l~~l~~~~~--~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 86 (229)
..++++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ...+.+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~-~~~r~~ 418 (587)
T 3qf4_A 340 GSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKL-KDLRGH 418 (587)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCH-HHHHHH
T ss_pred CcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCH-HHHHhh
Confidence 4699999999994 4689999999999999999999999999999999999999999999999999876543 345678
Q ss_pred ceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCC-----------hhhcCCCCCCChhHHHHHHHHHHHhc
Q 027067 87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLG-----------RLAKEKARMLSMGQRKRLQLARLLAI 155 (229)
Q Consensus 87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGqkqRv~lAral~~ 155 (229)
++|++|++.+++. |++||+.++... ...++..++++..++. ...++++.+||||||||++|||||+.
T Consensus 419 i~~v~Q~~~lf~~-tv~eni~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~ 496 (587)
T 3qf4_A 419 ISAVPQETVLFSG-TIKENLKWGRED-ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVK 496 (587)
T ss_dssp EEEECSSCCCCSE-EHHHHHTTTCSS-CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHT
T ss_pred eEEECCCCcCcCc-cHHHHHhccCCC-CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHc
Confidence 9999999998865 999999875321 1223344555555443 34467789999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067 156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~ 203 (229)
+|++|||||||++||+.+++.+.+.++++. +|+|+|+|||+++.+..
T Consensus 497 ~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~ 543 (587)
T 3qf4_A 497 KPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPTALL 543 (587)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHHHHTT
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChHHHHh
Confidence 999999999999999999999999998874 58999999999998863
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=9.5e-47 Score=327.51 Aligned_cols=174 Identities=25% Similarity=0.310 Sum_probs=134.7
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
++++++||++. .+++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++| +++
T Consensus 39 ~~l~~~~l~~~--~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g--------------~i~ 102 (290)
T 2bbs_A 39 DSLSFSNFSLL--GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--------------RIS 102 (290)
T ss_dssp -------------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS--------------CEE
T ss_pred ceEEEEEEEEc--CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC--------------EEE
Confidence 57999999986 36799999999999999999999999999999999999999999999987 378
Q ss_pred EeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhc-----------CCCCCCChhHHHHHHHHHHHhcCC
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAK-----------EKARMLSMGQRKRLQLARLLAIDR 157 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGqkqRv~lAral~~~p 157 (229)
|++|++.+++. ||+||+. .. ........++++.+++.+..+ +++.+|||||||||+|||||+.+|
T Consensus 103 ~v~Q~~~l~~~-tv~enl~-~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p 178 (290)
T 2bbs_A 103 FCSQNSWIMPG-TIKENII-GV--SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA 178 (290)
T ss_dssp EECSSCCCCSS-BHHHHHH-TT--CCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCC
T ss_pred EEeCCCccCcc-cHHHHhh-Cc--ccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCC
Confidence 99999888875 9999997 31 111112334556666654433 345899999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCcEEEEEeCChhhHHh
Q 027067 158 PIWLLDEPSVALDYDGVRLLEYII-AEHRKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 158 ~illlDEPt~~LD~~~~~~l~~~l-~~~~~~g~tii~vtH~~~~~~~ 203 (229)
++|||||||++||+.+++.+.+.+ ..++ +|+|||++|||++.+..
T Consensus 179 ~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~~~~~ 224 (290)
T 2bbs_A 179 DLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEHLKK 224 (290)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHHHHH
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHHHHHc
Confidence 999999999999999999998863 4443 48899999999988754
No 44
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.6e-44 Score=337.19 Aligned_cols=184 Identities=24% Similarity=0.289 Sum_probs=161.4
Q ss_pred CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
.++++++|+++.|++. .|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+. ..+
T Consensus 285 ~~~l~~~~l~~~~~~~-~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~--------------~~i 349 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGSF-RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD--------------LTV 349 (538)
T ss_dssp CEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC--------------CCE
T ss_pred CeEEEEeeEEEEECCE-EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC--------------ceE
Confidence 3579999999999875 6999999999999999999999999999999999999999999751 258
Q ss_pred eEeecccccCCCCCHHHhHHHH-HHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCC
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWF-EVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPS 166 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt 166 (229)
+|++|+....+.+||.+++... .........+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 350 ~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt 429 (538)
T 1yqt_A 350 AYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPS 429 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred EEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 9999998777788998887653 111122234567888999988899999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCcEEEEEeCChhhHHhhhc
Q 027067 167 VALDYDGVRLLEYIIAEHR-KKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 167 ~~LD~~~~~~l~~~l~~~~-~~g~tii~vtH~~~~~~~~~~ 206 (229)
+|||+.+++.+.++++++. +.|.|||+||||++++..++|
T Consensus 430 ~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d 470 (538)
T 1yqt_A 430 AYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSD 470 (538)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCS
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence 9999999999999999986 458999999999999998775
No 45
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=2.3e-44 Score=339.96 Aligned_cols=184 Identities=24% Similarity=0.285 Sum_probs=161.9
Q ss_pred CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
.++++++|+++.|++. .|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+. ..+
T Consensus 355 ~~~l~~~~l~~~~~~~-~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~--------------~~i 419 (607)
T 3bk7_A 355 ETLVEYPRLVKDYGSF-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD--------------LTV 419 (607)
T ss_dssp CEEEEECCEEEECSSC-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC--------------CCE
T ss_pred ceEEEEeceEEEecce-EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe--------------eEE
Confidence 3579999999999875 6899999999999999999999999999999999999999999751 258
Q ss_pred eEeecccccCCCCCHHHhHHHH-HHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCC
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWF-EVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPS 166 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt 166 (229)
+|++|+....+.+||.|++... .........+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 420 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt 499 (607)
T 3bk7_A 420 AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPS 499 (607)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred EEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 9999998777888999988654 111112234567899999998999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCcEEEEEeCChhhHHhhhc
Q 027067 167 VALDYDGVRLLEYIIAEHR-KKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 167 ~~LD~~~~~~l~~~l~~~~-~~g~tii~vtH~~~~~~~~~~ 206 (229)
+|||+.+++.+.++++++. +.|.|||+||||++++...+|
T Consensus 500 ~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~ad 540 (607)
T 3bk7_A 500 AYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSD 540 (607)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCS
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence 9999999999999999985 468999999999999988765
No 46
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.8e-44 Score=336.63 Aligned_cols=185 Identities=19% Similarity=0.181 Sum_probs=160.0
Q ss_pred CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
.+.++++|+++.|++. .|+.+||+|++||++||+||||||||||+|+|+|+++|++|+|.+++. .+
T Consensus 267 ~~~l~~~~l~~~~~~~-~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------~i 332 (538)
T 3ozx_A 267 KTKMKWTKIIKKLGDF-QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ-------------IL 332 (538)
T ss_dssp CEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC-------------CE
T ss_pred cceEEEcceEEEECCE-EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe-------------ee
Confidence 3579999999999874 588889999999999999999999999999999999999999987542 35
Q ss_pred eEeecccccCCCCCHHHhHHHHHHhc--CccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCC
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFEVLE--GKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEP 165 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEP 165 (229)
+|++|+.......||.||+.+..... .......++++.+++.+..++++.+|||||||||+|||||+.+|++||||||
T Consensus 333 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEP 412 (538)
T 3ozx_A 333 SYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQP 412 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred EeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 77888766666789999987632111 1122356778889999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067 166 SVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 166 t~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~ 206 (229)
|+|||+.++..+.++++++++ .|.|||+||||++++..++|
T Consensus 413 T~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aD 454 (538)
T 3ozx_A 413 SSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIAD 454 (538)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCS
T ss_pred ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence 999999999999999999864 58999999999999998765
No 47
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2.5e-44 Score=364.37 Aligned_cols=193 Identities=25% Similarity=0.379 Sum_probs=167.7
Q ss_pred CcEEEEeEEEEeCC---eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhh
Q 027067 9 PRLLLKNVSCMRNA---QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL 85 (229)
Q Consensus 9 ~~l~l~~l~~~~~~---~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 85 (229)
..++++||+++|++ .++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|++||.|+...+. ..++.
T Consensus 1075 g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~-~~lR~ 1153 (1321)
T 4f4c_A 1075 GKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNP-EHTRS 1153 (1321)
T ss_dssp CCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCH-HHHHT
T ss_pred CeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCH-HHHHh
Confidence 36999999999954 469999999999999999999999999999999999999999999999999988764 46788
Q ss_pred cceEeecccccCCCCCHHHhHHHHHH-hcCccccHHHHHHHhCCChhhc-----------CCCCCCChhHHHHHHHHHHH
Q 027067 86 QLNWLSLKDAVKEKFTVLDNVQWFEV-LEGKQGNSLPALELMGLGRLAK-----------EKARMLSMGQRKRLQLARLL 153 (229)
Q Consensus 86 ~~~~~~~~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGqkqRv~lAral 153 (229)
+++++||++.+|.. |++|||.++.. .....+++.++++..++.++.. ....+||||||||++|||||
T Consensus 1154 ~i~~V~Qdp~LF~g-TIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAl 1232 (1321)
T 4f4c_A 1154 QIAIVSQEPTLFDC-SIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARAL 1232 (1321)
T ss_dssp TEEEECSSCCCCSE-EHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHH
T ss_pred heEEECCCCEeeCc-cHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHH
Confidence 99999999999876 99999987532 1123456778888888765533 34578999999999999999
Q ss_pred hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067 154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA 204 (229)
Q Consensus 154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~ 204 (229)
+++|+|||||||||+||+++.+.+.+.+++.. +|+|+|+|+|+++.+.++
T Consensus 1233 lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsTi~~a 1282 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNTVMNA 1282 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSSTTTTC
T ss_pred HhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHHHHhC
Confidence 99999999999999999999999998887753 489999999999988775
No 48
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=2.5e-43 Score=356.31 Aligned_cols=191 Identities=25% Similarity=0.361 Sum_probs=162.8
Q ss_pred CcEEEEeEEEEeCC---eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhh
Q 027067 9 PRLLLKNVSCMRNA---QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL 85 (229)
Q Consensus 9 ~~l~l~~l~~~~~~---~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 85 (229)
..++++||+++|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...+. ...+.
T Consensus 386 g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~-~~~r~ 464 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINV-RYLRE 464 (1284)
T ss_dssp CCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCH-HHHHH
T ss_pred CeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCH-HHHHh
Confidence 35999999999964 479999999999999999999999999999999999999999999999999976653 34667
Q ss_pred cceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCCh-----------hhcCCCCCCChhHHHHHHHHHHHh
Q 027067 86 QLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGR-----------LAKEKARMLSMGQRKRLQLARLLA 154 (229)
Q Consensus 86 ~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqRv~lAral~ 154 (229)
+++|++|++.+++. |++||+.++... ...++..++++..++.+ ...+++.+|||||||||+|||||+
T Consensus 465 ~i~~v~Q~~~l~~~-ti~eNi~~g~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~ 542 (1284)
T 3g5u_A 465 IIGVVSQEPVLFAT-TIAENIRYGRED-VTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALV 542 (1284)
T ss_dssp HEEEECSSCCCCSS-CHHHHHHHHCSS-CCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHH
T ss_pred heEEEcCCCccCCc-cHHHHHhcCCCC-CCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHh
Confidence 89999999998876 999999876321 12233445555554433 234567799999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067 155 IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 155 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~ 203 (229)
.+|+|||||||||+||+++.+.+.+.++.+. +|+|+|+|||+++.+..
T Consensus 543 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~i~~ 590 (1284)
T 3g5u_A 543 RNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLSTVRN 590 (1284)
T ss_dssp HCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHHHHTT
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHc
Confidence 9999999999999999999999999988764 58999999999999877
No 49
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=4.6e-44 Score=337.91 Aligned_cols=192 Identities=19% Similarity=0.227 Sum_probs=156.8
Q ss_pred cEEE--------EeEEEEeCCe-eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEE---------EEcC
Q 027067 10 RLLL--------KNVSCMRNAQ-QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEI---------LWNG 71 (229)
Q Consensus 10 ~l~l--------~~l~~~~~~~-~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I---------~~~g 71 (229)
+|++ +||+++|+++ .+|+++| +|++||+++|+||||||||||+|+|+|+++|++|++ .++|
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G 161 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRG 161 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTT
T ss_pred eEEEecCCccccCCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCC
Confidence 5888 8999999876 4999999 999999999999999999999999999999999995 3445
Q ss_pred EeCCCCc-hhhhhhhcceEeecccccCC---CCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHH
Q 027067 72 HDITQSG-IFHQYKLQLNWLSLKDAVKE---KFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRL 147 (229)
Q Consensus 72 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv 147 (229)
.++.... ........+++++|.....+ ..|+.||+.. .....++.++++.+|+.+..++++.+|||||||||
T Consensus 162 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~----~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRv 237 (607)
T 3bk7_A 162 NELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKK----VDEVGKFEEVVKELELENVLDRELHQLSGGELQRV 237 (607)
T ss_dssp STHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHH----TCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHH
T ss_pred EehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhh----hHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHH
Confidence 4332100 00011234566666532222 2389888753 22235688899999999999999999999999999
Q ss_pred HHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 148 QLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 148 ~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
+|||||+.+|++|||||||++||+.+++.+.++|++++++|.|||+||||++++..++|
T Consensus 238 aIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~ad 296 (607)
T 3bk7_A 238 AIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSD 296 (607)
T ss_dssp HHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCS
T ss_pred HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCC
Confidence 99999999999999999999999999999999999998789999999999999887754
No 50
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=5.3e-44 Score=333.66 Aligned_cols=191 Identities=19% Similarity=0.227 Sum_probs=153.7
Q ss_pred EEE-EeEEEEeCCe-eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEE---------EEcCEeCCCCc-
Q 027067 11 LLL-KNVSCMRNAQ-QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEI---------LWNGHDITQSG- 78 (229)
Q Consensus 11 l~l-~~l~~~~~~~-~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I---------~~~g~~~~~~~- 78 (229)
.++ +||+++|+++ .+|+++| +|++||++||+||||||||||+|+|+|+++|++|++ .++|.++....
T Consensus 21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~ 99 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFE 99 (538)
T ss_dssp ---CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHH
T ss_pred hhHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHH
Confidence 566 6999999886 5999999 999999999999999999999999999999999985 34444321100
Q ss_pred hhhhhhhcceEeecccccCCC---CCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhc
Q 027067 79 IFHQYKLQLNWLSLKDAVKEK---FTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAI 155 (229)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~ 155 (229)
........+++++|.....+. .++.+++.. .....++.++++.+|+.+..++++.+|||||||||+|||||+.
T Consensus 100 ~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~----~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~ 175 (538)
T 1yqt_A 100 KLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKK----ADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLR 175 (538)
T ss_dssp HHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHH----HCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHS
T ss_pred HHHHHhhhhhhhhhhhhhcchhhhccHHHHHhh----hhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 000012346677765433221 378887753 1223568889999999988999999999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
+|++|||||||++||+.+++.+.+++++++++|.|||+||||++++..++|
T Consensus 176 ~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~d 226 (538)
T 1yqt_A 176 NATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSD 226 (538)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCS
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 999999999999999999999999999998789999999999999988764
No 51
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=3e-43 Score=355.74 Aligned_cols=192 Identities=24% Similarity=0.395 Sum_probs=163.8
Q ss_pred CcEEEEeEEEEeCC---eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhh
Q 027067 9 PRLLLKNVSCMRNA---QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL 85 (229)
Q Consensus 9 ~~l~l~~l~~~~~~---~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 85 (229)
..++++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...+. ...+.
T Consensus 1029 g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~-~~~r~ 1107 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNV-QWLRA 1107 (1284)
T ss_dssp CCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCH-HHHTT
T ss_pred CcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCH-HHHHh
Confidence 35999999999975 369999999999999999999999999999999999999999999999999987654 45677
Q ss_pred cceEeecccccCCCCCHHHhHHHHHHhc-CccccHHHHHHHhCCChhhcC-----------CCCCCChhHHHHHHHHHHH
Q 027067 86 QLNWLSLKDAVKEKFTVLDNVQWFEVLE-GKQGNSLPALELMGLGRLAKE-----------KARMLSMGQRKRLQLARLL 153 (229)
Q Consensus 86 ~~~~~~~~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGqkqRv~lAral 153 (229)
+++|++|++.++. .|++||+.++.... ...++..++++..++.++.++ .+.+|||||||||+|||||
T Consensus 1108 ~i~~v~Q~~~l~~-~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal 1186 (1284)
T 3g5u_A 1108 QLGIVSQEPILFD-CSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARAL 1186 (1284)
T ss_dssp SCEEEESSCCCCS-SBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHH
T ss_pred ceEEECCCCcccc-ccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHH
Confidence 8999999998775 59999998753211 122345566777776555443 4568999999999999999
Q ss_pred hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067 154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~ 203 (229)
+.+|+||||||||++||+.+++.+.+.+++. .+|+|+|+||||++.+..
T Consensus 1187 ~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~i~~ 1235 (1284)
T 3g5u_A 1187 VRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLSTIQN 1235 (1284)
T ss_dssp HHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTGGGS
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHHHHc
Confidence 9999999999999999999999999999875 458999999999999866
No 52
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=6.8e-43 Score=353.95 Aligned_cols=191 Identities=24% Similarity=0.363 Sum_probs=166.9
Q ss_pred cEEEEeEEEEeC---CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067 10 RLLLKNVSCMRN---AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ 86 (229)
Q Consensus 10 ~l~l~~l~~~~~---~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 86 (229)
.++++||+|+|+ ++++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.++...+. ..++.+
T Consensus 415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~-~~lr~~ 493 (1321)
T 4f4c_A 415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINL-EFLRKN 493 (1321)
T ss_dssp CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCH-HHHHHH
T ss_pred cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccH-HHHhhc
Confidence 599999999995 4679999999999999999999999999999999999999999999999999987764 456788
Q ss_pred ceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhh-----------cCCCCCCChhHHHHHHHHHHHhc
Q 027067 87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLA-----------KEKARMLSMGQRKRLQLARLLAI 155 (229)
Q Consensus 87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral~~ 155 (229)
++|++|++.++.. |++|||.++... ..++++.++++..++.++. ..+..+||||||||++||||++.
T Consensus 494 i~~v~Q~~~Lf~~-TI~eNI~~g~~~-~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~ 571 (1321)
T 4f4c_A 494 VAVVSQEPALFNC-TIEENISLGKEG-ITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVR 571 (1321)
T ss_dssp EEEECSSCCCCSE-EHHHHHHTTCTT-CCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTT
T ss_pred ccccCCcceeeCC-chhHHHhhhccc-chHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHcc
Confidence 9999999998866 999999986421 2345567777777765443 35668999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067 156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA 204 (229)
Q Consensus 156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~ 204 (229)
+|+|||||||||+||+++.+.+.+.+..+. +|+|+|+|||+++.+..+
T Consensus 572 ~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls~i~~a 619 (1321)
T 4f4c_A 572 NPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLSTIRNA 619 (1321)
T ss_dssp CCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTTTTTTC
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHHHHh-CCCEEEEEcccHHHHHhC
Confidence 999999999999999999889999998875 489999999999888764
No 53
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-40 Score=314.83 Aligned_cols=179 Identities=22% Similarity=0.247 Sum_probs=151.4
Q ss_pred EeEEEEeCC-eeeeeeeeEEEeCC-----cEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 14 KNVSCMRNA-QQILRHVNISIHDG-----GALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 14 ~~l~~~~~~-~~iL~~vsl~i~~G-----e~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
.+++++|++ ..+++++||++.+| |+++|+||||||||||+|+|+|+++|++|+. +. ...+
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~--------~~~i 415 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP--------KLNV 415 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC--------SCCE
T ss_pred cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc--------CCcE
Confidence 667788875 56899999999999 7899999999999999999999999999962 11 1357
Q ss_pred eEeecccccCCCCCHHHhHHHHHHh-cCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCC
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFEVL-EGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPS 166 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt 166 (229)
+|++|+.......||.+++...... ........++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 416 ~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT 495 (608)
T 3j16_B 416 SMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPS 495 (608)
T ss_dssp EEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred EEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 8999887666667999987532110 011234567899999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCcEEEEEeCChhhHHhhhc
Q 027067 167 VALDYDGVRLLEYIIAEHR-KKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 167 ~~LD~~~~~~l~~~l~~~~-~~g~tii~vtH~~~~~~~~~~ 206 (229)
+|||+.++..+.++++++. +.|.|||+||||++++...+|
T Consensus 496 ~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aD 536 (608)
T 3j16_B 496 AYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLAD 536 (608)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCS
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence 9999999999999999975 569999999999999998765
No 54
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=2.2e-40 Score=324.32 Aligned_cols=196 Identities=21% Similarity=0.244 Sum_probs=144.4
Q ss_pred CCcEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEe-CC---------
Q 027067 8 LPRLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHD-IT--------- 75 (229)
Q Consensus 8 ~~~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~-~~--------- 75 (229)
.++|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|.. +.
T Consensus 669 ~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~~~I~yv~Q~~~~~ 748 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAH 748 (986)
T ss_dssp SEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTTCCEEEECHHHHHH
T ss_pred CceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCccceEeeccchhhh
Confidence 357999999999965 689999999999999999999999999999999999999999999997620 00
Q ss_pred -----CCchhh--hhh-----------------------------------hc-c----------eEeec-------ccc
Q 027067 76 -----QSGIFH--QYK-----------------------------------LQ-L----------NWLSL-------KDA 95 (229)
Q Consensus 76 -----~~~~~~--~~~-----------------------------------~~-~----------~~~~~-------~~~ 95 (229)
.....+ ++. +. . .+..+ +-.
T Consensus 749 l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~ 828 (986)
T 2iw3_A 749 IESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIG 828 (986)
T ss_dssp GGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTT
T ss_pred hhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhhhh
Confidence 000000 000 00 0 00000 000
Q ss_pred ----cCCCCCHHHhHHHH--------HH----h-----------c-CccccHHHHHHHhCCCh-h-hcCCCCCCChhHHH
Q 027067 96 ----VKEKFTVLDNVQWF--------EV----L-----------E-GKQGNSLPALELMGLGR-L-AKEKARMLSMGQRK 145 (229)
Q Consensus 96 ----~~~~~tv~e~l~~~--------~~----~-----------~-~~~~~~~~~l~~~~l~~-~-~~~~~~~LSgGqkq 145 (229)
.+..+++.+|+.+. .. . . ....++.++++.+|+.. . .++++.+|||||||
T Consensus 829 l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQ 908 (986)
T 2iw3_A 829 MKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKV 908 (986)
T ss_dssp STTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGGCCHHHHH
T ss_pred cccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccccCHHHHH
Confidence 12234444442110 00 0 0 01234677899999975 4 68999999999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 146 RLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 146 Rv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
||+|||||+.+|++|||||||+|||+.+...+.+.++++ +.|||+||||++++...+|
T Consensus 909 RVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e~v~~l~D 966 (986)
T 2iw3_A 909 KLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAEFTKNLTE 966 (986)
T ss_dssp HHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHHHHTTTCC
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCHHHHHHhCC
Confidence 999999999999999999999999999998888877654 6799999999999988775
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=1.4e-39 Score=318.62 Aligned_cols=178 Identities=24% Similarity=0.287 Sum_probs=150.1
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
..+...|++++|+++.+|+|+||+|++|++++|+||||||||||+|+|+| |+| +|.+... ..+++
T Consensus 434 ~~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~-------~~~~~ 498 (986)
T 2iw3_A 434 EDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE-------ECRTV 498 (986)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT-------TSCEE
T ss_pred ceeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc-------ceeEE
Confidence 35788899999999999999999999999999999999999999999995 443 3433211 12357
Q ss_pred Eeeccc-ccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCC
Q 027067 89 WLSLKD-AVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPS 166 (229)
Q Consensus 89 ~~~~~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt 166 (229)
|++|+. .+++.+|+.||+.+ ...+...++.++++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 499 ~v~q~~~~~~~~ltv~e~l~~--~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPT 576 (986)
T 2iw3_A 499 YVEHDIDGTHSDTSVLDFVFE--SGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPT 576 (986)
T ss_dssp ETTCCCCCCCTTSBHHHHHHT--TCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTT
T ss_pred EEcccccccccCCcHHHHHHH--hhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 777764 56788899999875 1111134567889999995 6789999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 167 VALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 167 ~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
++||+.+++.+.++|++ .|.|||+||||++++...+|
T Consensus 577 s~LD~~~~~~l~~~L~~---~g~tvIivSHdl~~l~~~ad 613 (986)
T 2iw3_A 577 NHLDTVNVAWLVNYLNT---CGITSITISHDSVFLDNVCE 613 (986)
T ss_dssp TTCCHHHHHHHHHHHHH---SCSEEEEECSCHHHHHHHCS
T ss_pred cCCCHHHHHHHHHHHHh---CCCEEEEEECCHHHHHHhCC
Confidence 99999999999999987 58999999999999998765
No 56
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=4.8e-40 Score=313.96 Aligned_cols=180 Identities=25% Similarity=0.368 Sum_probs=120.7
Q ss_pred CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHH---------------------HHHHCCCCCC-------ccEEEEcCE
Q 027067 21 NAQQILRHVNISIHDGGALVLTGTNGSGKSTFL---------------------RMLAGFSKPS-------AGEILWNGH 72 (229)
Q Consensus 21 ~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl---------------------~~i~Gl~~p~-------~G~I~~~g~ 72 (229)
....+|+||||+|++||++||+||||||||||+ +++.|+.+|+ .|.|.++|.
T Consensus 29 ~~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~ 108 (670)
T 3ux8_A 29 ARAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQK 108 (670)
T ss_dssp ECSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSC
T ss_pred CCccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCc
Confidence 356799999999999999999999999999998 9999999998 455566665
Q ss_pred eCCCCchhhhhhhcceEeecc-------------------cccCCCCCHHHhHHHHHHhc--Cccc-----------cHH
Q 027067 73 DITQSGIFHQYKLQLNWLSLK-------------------DAVKEKFTVLDNVQWFEVLE--GKQG-----------NSL 120 (229)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~tv~e~l~~~~~~~--~~~~-----------~~~ 120 (229)
+.... .+..+++++|. ...++.+||.||+.++.... .... +..
T Consensus 109 ~~~~~-----~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (670)
T 3ux8_A 109 TTSRN-----PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL 183 (670)
T ss_dssp C----------CCBHHHHTTCC-------------------------CC--------------------------CHHHH
T ss_pred hhhcc-----chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHH
Confidence 44321 11122232222 22345678999987643211 0000 112
Q ss_pred HHHHHhCCChh-hcCCCCCCChhHHHHHHHHHHHhcCCC--eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q 027067 121 PALELMGLGRL-AKEKARMLSMGQRKRLQLARLLAIDRP--IWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHL 197 (229)
Q Consensus 121 ~~l~~~~l~~~-~~~~~~~LSgGqkqRv~lAral~~~p~--illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~ 197 (229)
++++.+||.+. .++++.+|||||||||+|||||+.+|+ +|||||||+|||+..++.+.+++++++++|.|||+||||
T Consensus 184 ~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 184 GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp HHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 34788999765 689999999999999999999999998 999999999999999999999999998889999999999
Q ss_pred hhhHHhhhc
Q 027067 198 PIQIEDAMN 206 (229)
Q Consensus 198 ~~~~~~~~~ 206 (229)
++.+.. +|
T Consensus 264 ~~~~~~-~d 271 (670)
T 3ux8_A 264 EDTMLA-AD 271 (670)
T ss_dssp HHHHHH-CS
T ss_pred HHHHhh-CC
Confidence 987654 44
No 57
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-39 Score=307.86 Aligned_cols=187 Identities=22% Similarity=0.263 Sum_probs=139.3
Q ss_pred eEEEEeCCe-eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEE-----------EcCEeCCCCchhhh
Q 027067 15 NVSCMRNAQ-QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEIL-----------WNGHDITQSGIFHQ 82 (229)
Q Consensus 15 ~l~~~~~~~-~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~-----------~~g~~~~~~~~~~~ 82 (229)
|++++|+.. ..|++++ .+++||++||+||||||||||||+|+|+++|++|+|. +.|.++.. .+..
T Consensus 82 ~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~--~~~~ 158 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQN--YFTK 158 (608)
T ss_dssp TEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHH--HHHH
T ss_pred CeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhh--hhhH
Confidence 467888754 4677777 6899999999999999999999999999999999982 22211100 0000
Q ss_pred -hhhcce--Eeecccc----c--CCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHH
Q 027067 83 -YKLQLN--WLSLKDA----V--KEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLL 153 (229)
Q Consensus 83 -~~~~~~--~~~~~~~----~--~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral 153 (229)
....+. +.++... . .+..++.+++... ......++.++++.+++.+..++++.+|||||||||+|||||
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~--~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL 236 (608)
T 3j16_B 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR--MEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSC 236 (608)
T ss_dssp HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHH--CCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhh--hhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHH
Confidence 001111 1111100 0 0111333333211 111234577899999999999999999999999999999999
Q ss_pred hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
+.+|++|||||||++||+.++..+.+++++++++|.|||+||||++++..++|
T Consensus 237 ~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~d 289 (608)
T 3j16_B 237 VQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSD 289 (608)
T ss_dssp HSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCS
T ss_pred HhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999999999999999998889999999999999988764
No 58
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.3e-39 Score=302.18 Aligned_cols=183 Identities=25% Similarity=0.333 Sum_probs=140.4
Q ss_pred eEEEEeCCeeeeeeeeEE-EeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEE-----------EEcCEeCCCCchhhh
Q 027067 15 NVSCMRNAQQILRHVNIS-IHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEI-----------LWNGHDITQSGIFHQ 82 (229)
Q Consensus 15 ~l~~~~~~~~iL~~vsl~-i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I-----------~~~g~~~~~~~~~~~ 82 (229)
+...+||..- ++-..|. +++||++||+||||||||||+|+|+|+++|++|+| .++|+++... +..
T Consensus 4 ~~~~~~~~~~-f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~--~~~ 80 (538)
T 3ozx_A 4 EVIHRYKVNG-FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNY--FKE 80 (538)
T ss_dssp CEEEESSTTS-CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHH--HHH
T ss_pred CCceecCCCc-eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHH--HHH
Confidence 4667886432 3333343 45899999999999999999999999999999998 5666554211 111
Q ss_pred -hhh------cceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhc
Q 027067 83 -YKL------QLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAI 155 (229)
Q Consensus 83 -~~~------~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~ 155 (229)
... .+.++.+.+.++ ..++.+++.. ......+.++++.+++....++++.+|||||||||+|||||+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~l~~----~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~ 155 (538)
T 3ozx_A 81 LYSNELKIVHKIQYVEYASKFL-KGTVNEILTK----IDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLR 155 (538)
T ss_dssp HHTTCCCEEEECSCTTGGGTTC-CSBHHHHHHH----HCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHS
T ss_pred Hhhcccchhhccchhhhhhhhc-cCcHHHHhhc----chhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 011 122222222222 2367765532 1234567889999999999999999999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
+|++|||||||++||+.++..+.++++++++ |+|||+||||++++..++|
T Consensus 156 ~p~illlDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~~~~~~~d 205 (538)
T 3ozx_A 156 EADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLIVLDYLTD 205 (538)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHHHHHHHCS
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChHHHHhhCC
Confidence 9999999999999999999999999999976 8999999999999988765
No 59
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=4.2e-37 Score=293.62 Aligned_cols=182 Identities=25% Similarity=0.338 Sum_probs=134.2
Q ss_pred CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH----------------------CCCCCCccEEEEcCEeCCCCch
Q 027067 22 AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLA----------------------GFSKPSAGEILWNGHDITQSGI 79 (229)
Q Consensus 22 ~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~----------------------Gl~~p~~G~I~~~g~~~~~~~~ 79 (229)
...+|+||||+|++||+++|+||||||||||+++|+ |+..+ .|.|.+++.++.....
T Consensus 334 ~~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~-~~~i~~~~~~~~~~~~ 412 (670)
T 3ux8_A 334 REHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL-DKVIDIDQSPIGRTPR 412 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC-SEEEECCSSCSCSSTT
T ss_pred cccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc-CceeEeccccCCCCCC
Confidence 356899999999999999999999999999998754 44443 4688888877643210
Q ss_pred ---------hhhhh-------------------------------hcceEeeccccc-----------------------
Q 027067 80 ---------FHQYK-------------------------------LQLNWLSLKDAV----------------------- 96 (229)
Q Consensus 80 ---------~~~~~-------------------------------~~~~~~~~~~~~----------------------- 96 (229)
+.+.. ...++++++..+
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (670)
T 3ux8_A 413 SNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEV 492 (670)
T ss_dssp CCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTC
T ss_pred cchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhe
Confidence 00000 001111111111
Q ss_pred ---------CCCCCHHHhHHHHHHhcCccccHHHHHHHhCCCh-hhcCCCCCCChhHHHHHHHHHHHhcCCC---eEEEe
Q 027067 97 ---------KEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGR-LAKEKARMLSMGQRKRLQLARLLAIDRP---IWLLD 163 (229)
Q Consensus 97 ---------~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~~p~---illlD 163 (229)
+..+|+.||+.++.... ...+..+.+..+++.. ..++++.+|||||||||+|||||+.+|+ +||||
T Consensus 493 ~~~~~~~~~~~~ltv~e~l~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllD 571 (670)
T 3ux8_A 493 TYKGKNIAEVLDMTVEDALDFFASIP-KIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILD 571 (670)
T ss_dssp CBTTBCHHHHHTSBHHHHHHHTTTCH-HHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEE
T ss_pred eecCCCHHHHhhCCHHHHHHHHHHhh-hHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEe
Confidence 12468888887643211 1134557788899864 4689999999999999999999999874 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 164 EPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 164 EPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
|||+|||+.+++.+.+++++++++|.|||+||||++.+.. +|
T Consensus 572 EPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~-~d 613 (670)
T 3ux8_A 572 EPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKT-AD 613 (670)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT-CS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHh-CC
Confidence 9999999999999999999998889999999999988753 44
No 60
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=4.1e-35 Score=284.30 Aligned_cols=192 Identities=23% Similarity=0.263 Sum_probs=140.6
Q ss_pred CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHH-HHCCC-------CC-----------------
Q 027067 8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRM-LAGFS-------KP----------------- 62 (229)
Q Consensus 8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~-i~Gl~-------~p----------------- 62 (229)
.+.|+++|+++ .+|+||||+|++||++||+|+||||||||+++ |+|++ +|
T Consensus 500 ~~~L~v~~l~~-----~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~ 574 (842)
T 2vf7_A 500 AGWLELNGVTR-----NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSA 574 (842)
T ss_dssp SCEEEEEEEEE-----TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCC
T ss_pred CceEEEEeeee-----cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccc
Confidence 45799999985 26999999999999999999999999999996 76543 23
Q ss_pred -Ccc-------EEEEcCEeCCCCch---------hhhhh---------hcceEee----------------------ccc
Q 027067 63 -SAG-------EILWNGHDITQSGI---------FHQYK---------LQLNWLS----------------------LKD 94 (229)
Q Consensus 63 -~~G-------~I~~~g~~~~~~~~---------~~~~~---------~~~~~~~----------------------~~~ 94 (229)
.+| .|.+++.++..... +...+ +..+|.+ .+.
T Consensus 575 ~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~ 654 (842)
T 2vf7_A 575 RLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVEL 654 (842)
T ss_dssp EEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETT
T ss_pred cccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhh
Confidence 356 67888877643211 01111 1111111 111
Q ss_pred ccC------------------------CCCCH--------HHhHHHHHHhcCccccHHHHHHHhCCCh-hhcCCCCCCCh
Q 027067 95 AVK------------------------EKFTV--------LDNVQWFEVLEGKQGNSLPALELMGLGR-LAKEKARMLSM 141 (229)
Q Consensus 95 ~~~------------------------~~~tv--------~e~l~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSg 141 (229)
.++ ...++ .+++.++.... ...++.++++.++|.. ..++++.+|||
T Consensus 655 ~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~~-~~~~~~~~L~~~gL~~~~l~~~~~~LSG 733 (842)
T 2vf7_A 655 LFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADES-AIFRALDTLREVGLGYLRLGQPATELSG 733 (842)
T ss_dssp CSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTSH-HHHHHHHHHHHTTCTTSBTTCCGGGCCH
T ss_pred hcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcch-HHHHHHHHHHHcCCCcccccCCcccCCH
Confidence 111 12344 44433321110 1124567899999986 46899999999
Q ss_pred hHHHHHHHHHHHhcC---CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 142 GQRKRLQLARLLAID---RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 142 GqkqRv~lAral~~~---p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
||||||+||++|+.+ |++|||||||+|||+..++.+.+++++++++|.|||+||||++++ ..+|
T Consensus 734 GekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i-~~aD 800 (842)
T 2vf7_A 734 GEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVV-AASD 800 (842)
T ss_dssp HHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCS
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCC
Confidence 999999999999996 799999999999999999999999999988899999999999998 5554
No 61
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-38 Score=289.72 Aligned_cols=176 Identities=16% Similarity=0.193 Sum_probs=142.8
Q ss_pred CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCcc-E-EEEcCEeCCCCchhhhhhh
Q 027067 8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAG-E-ILWNGHDITQSGIFHQYKL 85 (229)
Q Consensus 8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G-~-I~~~g~~~~~~~~~~~~~~ 85 (229)
.++++++||+++|+ ++||++++|++++|+||||||||||+|+|+|+++|++| + |+++|. .++
T Consensus 116 ~~mi~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~----------~~~ 179 (460)
T 2npi_A 116 HTMKYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD----------PQQ 179 (460)
T ss_dssp CTHHHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC----------TTS
T ss_pred cchhhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC----------ccC
Confidence 56899999998885 79999999999999999999999999999999999999 9 999982 134
Q ss_pred cceEeecccc---cCCCCCHHHhHHHHHHh-cC--ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHH--HhcCC
Q 027067 86 QLNWLSLKDA---VKEKFTVLDNVQWFEVL-EG--KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARL--LAIDR 157 (229)
Q Consensus 86 ~~~~~~~~~~---~~~~~tv~e~l~~~~~~-~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAra--l~~~p 157 (229)
++++++|+.. +...+|+.||+ ++... .+ ....+.++++.+|+.+..+ +.+|||||||||+|||| |+.+|
T Consensus 180 ~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p 256 (460)
T 2npi_A 180 PIFTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDP 256 (460)
T ss_dssp CSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred Ceeeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCc
Confidence 6788888774 34456898888 54321 11 1233456778889887766 89999999999999999 99999
Q ss_pred Ce----EEEeC-CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChh------hHHhhhc
Q 027067 158 PI----WLLDE-PSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPI------QIEDAMN 206 (229)
Q Consensus 158 ~i----lllDE-Pt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~------~~~~~~~ 206 (229)
++ ||||| ||++||+. .+.+.+++++ .+.|+|+|||+.+ ++...+|
T Consensus 257 ~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~d 312 (460)
T 2npi_A 257 QVRRSGCIVDTPSISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGP 312 (460)
T ss_dssp HHHHSCEEEECCCGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHH
T ss_pred ccCcceEEEeCCcccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcc
Confidence 99 99999 99999999 6666666554 3789999999987 5555555
No 62
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=2.6e-34 Score=280.02 Aligned_cols=191 Identities=25% Similarity=0.311 Sum_probs=141.3
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH-CCC-------CCCcc-------------EE
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLA-GFS-------KPSAG-------------EI 67 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~-Gl~-------~p~~G-------------~I 67 (229)
+.|+++|++. ..|+||||+|++|+++||+|+||||||||+++|+ |.+ .+..| .|
T Consensus 628 ~~L~v~~l~~-----~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I 702 (972)
T 2r6f_A 628 RWLEVVGARE-----HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVI 702 (972)
T ss_dssp CEEEEEEECS-----SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEE
T ss_pred eEEEEecCcc-----cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEE
Confidence 5799999862 4699999999999999999999999999999854 221 12233 37
Q ss_pred EEcCEeCCCCc---h------hhh---------hhhcceEeecccccC--------------------------------
Q 027067 68 LWNGHDITQSG---I------FHQ---------YKLQLNWLSLKDAVK-------------------------------- 97 (229)
Q Consensus 68 ~~~g~~~~~~~---~------~~~---------~~~~~~~~~~~~~~~-------------------------------- 97 (229)
.+++.++.... . +.. ..+..+|+++...+.
T Consensus 703 ~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c 782 (972)
T 2r6f_A 703 DIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVC 782 (972)
T ss_dssp EECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTT
T ss_pred EEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccccc
Confidence 78887764211 0 000 012245554432221
Q ss_pred --------------C--------CCCHHHhHHHHHHhcCccccHHHHHHHhCCCh-hhcCCCCCCChhHHHHHHHHHHHh
Q 027067 98 --------------E--------KFTVLDNVQWFEVLEGKQGNSLPALELMGLGR-LAKEKARMLSMGQRKRLQLARLLA 154 (229)
Q Consensus 98 --------------~--------~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~ 154 (229)
. .+|+.|++.++.... ...+..++++.++|.. ..++++.+|||||||||+||++|+
T Consensus 783 ~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~~-~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~ 861 (972)
T 2r6f_A 783 HGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASIP-KIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELH 861 (972)
T ss_dssp TTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSCH-HHHHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHS
T ss_pred ccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcch-hHHHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHh
Confidence 0 346666665532111 1123457899999986 689999999999999999999999
Q ss_pred cCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 155 IDR---PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 155 ~~p---~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
.+| ++|||||||+|||+..++.+.++|++++++|.|||+||||++++. .+|
T Consensus 862 ~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~-~aD 915 (972)
T 2r6f_A 862 RRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIK-TAD 915 (972)
T ss_dssp SCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCS
T ss_pred cCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH-hCC
Confidence 875 999999999999999999999999999888999999999999874 444
No 63
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=100.00 E-value=6.8e-34 Score=256.22 Aligned_cols=181 Identities=15% Similarity=0.149 Sum_probs=127.8
Q ss_pred CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC--------------------------------------CC
Q 027067 22 AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK--------------------------------------PS 63 (229)
Q Consensus 22 ~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~--------------------------------------p~ 63 (229)
+..++++++|++.+| +++|+|||||||||||++|+++.. +.
T Consensus 47 nf~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~ 125 (415)
T 4aby_A 47 NLATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAG 125 (415)
T ss_dssp EETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTS
T ss_pred cccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCC
Confidence 446899999999999 999999999999999999977764 45
Q ss_pred ccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHHhc-------------------------C----
Q 027067 64 AGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLE-------------------------G---- 114 (229)
Q Consensus 64 ~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~-------------------------~---- 114 (229)
+|+++++|++++...........+.+++|.+.++.. +..+...+..... .
T Consensus 126 ~~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~ 204 (415)
T 4aby_A 126 RGAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESS 204 (415)
T ss_dssp CEEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred ceEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 789999999986432222222336778887655432 3322222110000 0
Q ss_pred ------------------------------------ccccHHHHHHHhCCChh-----------------------hc--
Q 027067 115 ------------------------------------KQGNSLPALELMGLGRL-----------------------AK-- 133 (229)
Q Consensus 115 ------------------------------------~~~~~~~~l~~~~l~~~-----------------------~~-- 133 (229)
....+.+.++.+++... ..
T Consensus 205 ~~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 284 (415)
T 4aby_A 205 KHPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSAN 284 (415)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESS
T ss_pred hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcC
Confidence 00011223334444220 01
Q ss_pred -----CCCCC-CChhHHHHHHHHHHHhcCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhh
Q 027067 134 -----EKARM-LSMGQRKRLQLARLLAIDR--PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAM 205 (229)
Q Consensus 134 -----~~~~~-LSgGqkqRv~lAral~~~p--~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~ 205 (229)
+++.. |||||||||+||++|+.+| ++|||||||++||+..++.+.++|+++. +|.|||+|||+++.+. .+
T Consensus 285 ~~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~~~~-~~ 362 (415)
T 4aby_A 285 PGEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQIAA-RA 362 (415)
T ss_dssp SSCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHHHT-TC
T ss_pred CCCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHHh-hc
Confidence 22222 6999999999999999999 9999999999999999999999999987 5899999999997664 44
Q ss_pred c
Q 027067 206 N 206 (229)
Q Consensus 206 ~ 206 (229)
|
T Consensus 363 d 363 (415)
T 4aby_A 363 H 363 (415)
T ss_dssp S
T ss_pred C
Confidence 4
No 64
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=1.2e-33 Score=276.04 Aligned_cols=191 Identities=25% Similarity=0.326 Sum_probs=137.8
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH-C----CCC---CCccE-------------E
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLA-G----FSK---PSAGE-------------I 67 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~-G----l~~---p~~G~-------------I 67 (229)
+.|+++|++. .+|+||||+|++|+++||+|+||||||||+++|+ | .+. +..|. |
T Consensus 646 ~~L~v~~l~~-----~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~i 720 (993)
T 2ygr_A 646 RQLTVVGARE-----HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKLV 720 (993)
T ss_dssp SEEEEEEECS-----TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEEE
T ss_pred ceEEEecCcc-----ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceEE
Confidence 5799999862 3699999999999999999999999999999853 2 221 23443 4
Q ss_pred EEcCEeCCCCc---h------hhh---------hhhcceEeecccccC----------------------C---------
Q 027067 68 LWNGHDITQSG---I------FHQ---------YKLQLNWLSLKDAVK----------------------E--------- 98 (229)
Q Consensus 68 ~~~g~~~~~~~---~------~~~---------~~~~~~~~~~~~~~~----------------------~--------- 98 (229)
.+++.++.... . +.. ..+..+|.++...+. +
T Consensus 721 ~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~c 800 (993)
T 2ygr_A 721 RIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVC 800 (993)
T ss_dssp CCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTTT
T ss_pred EecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehhc
Confidence 44554442110 0 000 012234444332211 1
Q ss_pred -----------------------CCCHHHhHHHHHHhcCccccHHHHHHHhCCCh-hhcCCCCCCChhHHHHHHHHHHHh
Q 027067 99 -----------------------KFTVLDNVQWFEVLEGKQGNSLPALELMGLGR-LAKEKARMLSMGQRKRLQLARLLA 154 (229)
Q Consensus 99 -----------------------~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~ 154 (229)
.+|+.|++.++.... ...+..++++.+||.. ..++++.+|||||||||+||++|+
T Consensus 801 ~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~~~-~~~~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~ 879 (993)
T 2ygr_A 801 QGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEPIA-GVHRYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQ 879 (993)
T ss_dssp TTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTTCH-HHHHHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHS
T ss_pred cccccchhhhhhhccCCCHHHHhhccHHHHHHHhhcch-HHHHHHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHH
Confidence 235566655432111 1123457899999986 678999999999999999999999
Q ss_pred cCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 155 IDR---PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 155 ~~p---~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
.+| ++|||||||+|||+..++.+.++|++++++|.|||+||||++++. .+|
T Consensus 880 ~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~-~aD 933 (993)
T 2ygr_A 880 KRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIK-TSD 933 (993)
T ss_dssp SCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCS
T ss_pred hCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH-hCC
Confidence 875 999999999999999999999999999888999999999999874 444
No 65
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.8e-32 Score=267.71 Aligned_cols=188 Identities=27% Similarity=0.422 Sum_probs=135.0
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHH---------HHHHCCCCCCc------c------EEE
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFL---------RMLAGFSKPSA------G------EIL 68 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl---------~~i~Gl~~p~~------G------~I~ 68 (229)
.+++++++ ...|+||||+|++|++++|+|+||||||||+ +.+.|...+.. | .+.
T Consensus 589 ~l~v~~~~-----~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~ 663 (916)
T 3pih_A 589 SLKIKGVR-----HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIA 663 (916)
T ss_dssp EEEEEEEC-----STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEE
T ss_pred eEEEeeec-----cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEe
Confidence 35555543 4579999999999999999999999999997 45555544332 2 244
Q ss_pred EcCEeCCCCc---------hhhhh-------------------------------hhcceEeecccccCC----------
Q 027067 69 WNGHDITQSG---------IFHQY-------------------------------KLQLNWLSLKDAVKE---------- 98 (229)
Q Consensus 69 ~~g~~~~~~~---------~~~~~-------------------------------~~~~~~~~~~~~~~~---------- 98 (229)
++..++.... .+... ....+++.++..+++
T Consensus 664 idq~pig~~~rs~~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~ 743 (916)
T 3pih_A 664 IDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCK 743 (916)
T ss_dssp ECSCCCCCCTTCCHHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTT
T ss_pred eccccccccccccccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeeccccc
Confidence 4443332210 00000 012345544443333
Q ss_pred ----------------------CCCHHHhHHHHHHhcCccccHHHHHHHhCCCh-hhcCCCCCCChhHHHHHHHHHHHhc
Q 027067 99 ----------------------KFTVLDNVQWFEVLEGKQGNSLPALELMGLGR-LAKEKARMLSMGQRKRLQLARLLAI 155 (229)
Q Consensus 99 ----------------------~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~ 155 (229)
.+|+.|++.++.... ...+..++++.+||.. ..++++.+|||||||||+|||||+.
T Consensus 744 g~r~~~e~l~i~~~g~~i~~vl~~tv~eal~f~~~~~-~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~ 822 (916)
T 3pih_A 744 GKRYNRETLEITYKGKNISDILDMTVDEALEFFKNIP-SIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRK 822 (916)
T ss_dssp TSCBCTTGGGCCBTTBCHHHHHSSBHHHHHHHTTTCH-HHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTS
T ss_pred ccccchhhhhhhhccCCHHHHhhCCHHHHHHHHhcch-hHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhh
Confidence 246666666543211 1234567899999964 3688999999999999999999998
Q ss_pred CC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067 156 DR---PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 156 ~p---~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~ 203 (229)
+| ++|||||||+|||+..++.+.++|++++++|.|||+||||++.+..
T Consensus 823 ~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ 873 (916)
T 3pih_A 823 RDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKN 873 (916)
T ss_dssp CCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh
Confidence 76 7999999999999999999999999998889999999999998865
No 66
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.97 E-value=5.2e-36 Score=248.39 Aligned_cols=150 Identities=13% Similarity=0.118 Sum_probs=103.9
Q ss_pred EEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccC
Q 027067 18 CMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVK 97 (229)
Q Consensus 18 ~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (229)
++|+++.+|+++ ++||+++|+||||||||||+|+|+|+ +|++|+|.. .++... . ...+..++|++|++
T Consensus 8 k~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~--~~~~~~-~-~~~~~~ig~v~q~~--- 75 (208)
T 3b85_A 8 KTLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR--IILTRP-A-VEAGEKLGFLPGTL--- 75 (208)
T ss_dssp CSHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE--EEEEEC-S-CCTTCCCCSSCC-----
T ss_pred CCHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee--EEecCC-c-hhhhcceEEecCCH---
Confidence 356777899996 89999999999999999999999999 999999943 222211 0 12345789998865
Q ss_pred CCCCHHHhH-HHHH----HhcC--ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q 027067 98 EKFTVLDNV-QWFE----VLEG--KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170 (229)
Q Consensus 98 ~~~tv~e~l-~~~~----~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD 170 (229)
.||+ .+.. .... ....+.++++. ++ ||||||+|||||+.+|++|||||||++
T Consensus 76 -----~enl~~~~~~~~~~~~~~~~~~~~~~~l~~-gl-------------Gq~qrv~lAraL~~~p~lllLDEPts~-- 134 (208)
T 3b85_A 76 -----NEKIDPYLRPLHDALRDMVEPEVIPKLMEA-GI-------------VEVAPLAYMRGRTLNDAFVILDEAQNT-- 134 (208)
T ss_dssp ---------CTTTHHHHHHHTTTSCTTHHHHHHHT-TS-------------EEEEEGGGGTTCCBCSEEEEECSGGGC--
T ss_pred -----HHHHHHHHHHHHHHHHHhccHHHHHHHHHh-CC-------------chHHHHHHHHHHhcCCCEEEEeCCccc--
Confidence 3343 2211 1111 11223344443 32 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067 171 YDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA 204 (229)
Q Consensus 171 ~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~ 204 (229)
+++.+.+++.++ ++|+||| +|||+++++..
T Consensus 135 --~~~~l~~~l~~l-~~g~tii-vtHd~~~~~~~ 164 (208)
T 3b85_A 135 --TPAQMKMFLTRL-GFGSKMV-VTGDITQVDLP 164 (208)
T ss_dssp --CHHHHHHHHTTB-CTTCEEE-EEEC-------
T ss_pred --cHHHHHHHHHHh-cCCCEEE-EECCHHHHhCc
Confidence 778888888887 5688999 99999887763
No 67
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.97 E-value=3e-33 Score=224.35 Aligned_cols=148 Identities=14% Similarity=0.153 Sum_probs=102.4
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeeccccc-CCCCCHHHhH
Q 027067 28 HVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAV-KEKFTVLDNV 106 (229)
Q Consensus 28 ~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~tv~e~l 106 (229)
||||++++||+++|+||||||||||+|++.+ |...+... .. .+++++++.- ...-++++.+
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~~~d---------~~---~g~~~~~~~~~~~~~~~~~~~ 62 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVISSD---------FC---RGLMSDDENDQTVTGAAFDVL 62 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEEEHH---------HH---HHHHCSSTTCGGGHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEEccH---------HH---HHHhcCcccchhhHHHHHHHH
Confidence 6899999999999999999999999998653 21111110 01 1333333210 0000112221
Q ss_pred HHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH--------------
Q 027067 107 QWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYD-------------- 172 (229)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~-------------- 172 (229)
.. ........+.....+ .....|+|||||++||||++.+|++|+|||||++||+.
T Consensus 63 ~~----------~~~~~~~~g~~~~~~-~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi 131 (171)
T 4gp7_A 63 HY----------IVSKRLQLGKLTVVD-ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVI 131 (171)
T ss_dssp HH----------HHHHHHHTTCCEEEE-SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHH
T ss_pred HH----------HHHHHHhCCCeEEEE-CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHH
Confidence 11 111222345443333 34566999999999999999999999999999999999
Q ss_pred --HHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067 173 --GVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA 204 (229)
Q Consensus 173 --~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~ 204 (229)
.+..+.+.++.++++|.|+|++|||+++++.+
T Consensus 132 ~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~ 165 (171)
T 4gp7_A 132 RKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEV 165 (171)
T ss_dssp HHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHE
T ss_pred HHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhh
Confidence 55888888888877799999999999998764
No 68
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.97 E-value=3.6e-33 Score=252.50 Aligned_cols=166 Identities=16% Similarity=0.134 Sum_probs=134.3
Q ss_pred eeeeeeeeEEEeCCc--------------------EEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhh
Q 027067 23 QQILRHVNISIHDGG--------------------ALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQ 82 (229)
Q Consensus 23 ~~iL~~vsl~i~~Ge--------------------~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~ 82 (229)
+.+|++|||+|++|+ ++||+||||||||||+|+|+|+++|++|+|.++|.+++.
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~------ 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTM------ 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----C------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecce------
Confidence 468999999999999 999999999999999999999999999999998876531
Q ss_pred hhhcceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChh--HHHHHHHHHHHhc-----
Q 027067 83 YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMG--QRKRLQLARLLAI----- 155 (229)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG--qkqRv~lAral~~----- 155 (229)
.++++|.+ .++.+++.|++.+.. ......++++.+++.+.. ..+. ||+| |+||++||+||+.
T Consensus 110 ----~~~v~q~~-~~~~ltv~D~~g~~~----~~~~~~~~L~~~~L~~~~-~~~~-lS~G~~~kqrv~la~aL~~~~~p~ 178 (413)
T 1tq4_A 110 ----ERHPYKHP-NIPNVVFWDLPGIGS----TNFPPDTYLEKMKFYEYD-FFII-ISATRFKKNDIDIAKAISMMKKEF 178 (413)
T ss_dssp ----CCEEEECS-SCTTEEEEECCCGGG----SSCCHHHHHHHTTGGGCS-EEEE-EESSCCCHHHHHHHHHHHHTTCEE
T ss_pred ----eEEecccc-ccCCeeehHhhcccc----hHHHHHHHHHHcCCCccC-CeEE-eCCCCccHHHHHHHHHHHhcCCCe
Confidence 15677764 466788888876532 234678899999987543 3334 9999 9999999999999
Q ss_pred -----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-----hCC----cEEEEEeCChhh--HHhhh
Q 027067 156 -----DRPIWLLDEPSVALDYDGVRLLEYIIAEHR-----KKG----GIVIVATHLPIQ--IEDAM 205 (229)
Q Consensus 156 -----~p~illlDEPt~~LD~~~~~~l~~~l~~~~-----~~g----~tii~vtH~~~~--~~~~~ 205 (229)
+|+++++||||++||+..++.+.+.++++. +.| .+|+++||+++. +++.+
T Consensus 179 ~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~ 244 (413)
T 1tq4_A 179 YFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLM 244 (413)
T ss_dssp EEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHH
T ss_pred EEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHH
Confidence 999999999999999999988888888874 332 578899998776 55544
No 69
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.96 E-value=2.6e-30 Score=226.79 Aligned_cols=73 Identities=30% Similarity=0.401 Sum_probs=63.6
Q ss_pred hcCCCCCCChhHHHHHHHHHHHh----cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 132 AKEKARMLSMGQRKRLQLARLLA----IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 132 ~~~~~~~LSgGqkqRv~lAral~----~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
.++++.+||+|||||++||+||+ .+|++|||||||++||+..++.+.++++++. ++.+||++||+++ +.+.+|
T Consensus 213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~-~~~~~d 289 (322)
T 1e69_A 213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI-VMEAAD 289 (322)
T ss_dssp CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT-GGGGCS
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH-HHhhCc
Confidence 46678899999999999999997 6889999999999999999999999999884 4789999999964 344444
No 70
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.96 E-value=6.5e-29 Score=221.67 Aligned_cols=69 Identities=19% Similarity=0.238 Sum_probs=65.0
Q ss_pred cCCCCCCChhHHHHHHHHHHHh------cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhH
Q 027067 133 KEKARMLSMGQRKRLQLARLLA------IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQI 201 (229)
Q Consensus 133 ~~~~~~LSgGqkqRv~lAral~------~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~ 201 (229)
++++.+|||||||||+||+||+ .+|++|||||||++||+.+++.+.+++..+++.|.|||+||||++.+
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~ 348 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFS 348 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHH
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHH
Confidence 5688999999999999999999 79999999999999999999999999999988899999999999874
No 71
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.95 E-value=5.4e-30 Score=207.29 Aligned_cols=141 Identities=11% Similarity=0.084 Sum_probs=101.9
Q ss_pred EEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHHhcCccc
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQG 117 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~ 117 (229)
+++|+||||||||||+|+|+|++. |.++|.+..... .......++|++|+. ++.+++ + ....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~-~~~~~~~ig~~~~~~------~~~~~~-~-~~~~---- 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVR-DPETKKRTGFRIITT------EGKKKI-F-SSKF---- 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC-------CCEEEEEET------TCCEEE-E-EETT----
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhc-cccccceeEEEeecC------cHHHHH-H-Hhhc----
Confidence 689999999999999999999985 455665432110 002345688888764 222332 1 0000
Q ss_pred cHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHH-----HhcCCCeEEEeC--CCCCCCHHHHHHHHHHHHHHHhCCcE
Q 027067 118 NSLPALELMGLGRLAKEKARMLSMGQRKRLQLARL-----LAIDRPIWLLDE--PSVALDYDGVRLLEYIIAEHRKKGGI 190 (229)
Q Consensus 118 ~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAra-----l~~~p~illlDE--Pt~~LD~~~~~~l~~~l~~~~~~g~t 190 (229)
+.-....++++.+||||||||++||+| ++.+|+++|||| ||++||+..++.+.+++.+ .+.|
T Consensus 64 --------~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~---~~~~ 132 (178)
T 1ye8_A 64 --------FTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD---PNVN 132 (178)
T ss_dssp --------CCCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC---TTSE
T ss_pred --------CCccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc---CCCe
Confidence 000135678899999999999999996 999999999999 9999999999888888754 4677
Q ss_pred EEEEeC---ChhhHHhhhcc
Q 027067 191 VIVATH---LPIQIEDAMNL 207 (229)
Q Consensus 191 ii~vtH---~~~~~~~~~~~ 207 (229)
+|++|| +.+.++..++.
T Consensus 133 ~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 133 VVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp EEEECCSSCCSHHHHHHHTC
T ss_pred EEEEEccCCCchHHHHHHhc
Confidence 888885 88888887764
No 72
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.95 E-value=4.1e-30 Score=224.10 Aligned_cols=158 Identities=15% Similarity=0.143 Sum_probs=125.8
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchh---hhh--hhcceEeecccc-cCCC
Q 027067 26 LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF---HQY--KLQLNWLSLKDA-VKEK 99 (229)
Q Consensus 26 L~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~---~~~--~~~~~~~~~~~~-~~~~ 99 (229)
++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++...... ..+ +.+++|++|++. +++.
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 4678999999999999999999999999999999999999999999987653211 112 347899999887 8888
Q ss_pred CCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCC--eEEEeCCCCCCCHHHHHHH
Q 027067 100 FTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRP--IWLLDEPSVALDYDGVRLL 177 (229)
Q Consensus 100 ~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~--illlDEPt~~LD~~~~~~l 177 (229)
.+++|++.+.... ... ..+++.+|+.+..++++.+|| |||++||||++.+|+ +|+|| ||+|||+..+.
T Consensus 170 ~~v~e~l~~~~~~-~~d---~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~-- 239 (302)
T 3b9q_A 170 TVLSKAVKRGKEE-GYD---VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA-- 239 (302)
T ss_dssp HHHHHHHHHHHHT-TCS---EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH--
T ss_pred HHHHHHHHHHHHc-CCc---chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH--
Confidence 8999999875321 111 124566777777778889999 999999999999999 99999 99999998542
Q ss_pred HHHHHHHH-hCCcEEEEEeCC
Q 027067 178 EYIIAEHR-KKGGIVIVATHL 197 (229)
Q Consensus 178 ~~~l~~~~-~~g~tii~vtH~ 197 (229)
+.++ +.|.|+|++||.
T Consensus 240 ----~~~~~~~g~t~iiiThl 256 (302)
T 3b9q_A 240 ----REFNEVVGITGLILTKL 256 (302)
T ss_dssp ----HHHHHHTCCCEEEEECC
T ss_pred ----HHHHHhcCCCEEEEeCC
Confidence 3343 458999999994
No 73
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.94 E-value=8.8e-31 Score=215.61 Aligned_cols=167 Identities=13% Similarity=0.043 Sum_probs=113.1
Q ss_pred eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCH
Q 027067 23 QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTV 102 (229)
Q Consensus 23 ~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv 102 (229)
..+++| .+|++||+++|+||||||||||+|+|+|+++. |.+++....... ....+..++|++|++..++.+++
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~~~~~~~-~~~~~~~i~~~~q~~~~~~~~~~ 81 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVSATTRAP-RPGEVDGVDYHFIDPTRFQQLID 81 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECCCEESSCC-CTTCCBTTTBEECCHHHHHHHHH
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcccccccCC-cccccCCCeeEecCHHHHHHHHh
Confidence 457777 79999999999999999999999999999863 444432211111 11224568999998877776676
Q ss_pred HHhHHHH----H--HhcCc-c----ccHHHH------HHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCC
Q 027067 103 LDNVQWF----E--VLEGK-Q----GNSLPA------LELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEP 165 (229)
Q Consensus 103 ~e~l~~~----~--~~~~~-~----~~~~~~------l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEP 165 (229)
.+++..+ . ..++. . ..+.+. ++.+|+....++++.+|| +|+.+|++++||||
T Consensus 82 ~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS-----------~l~~~p~~~~LDep 150 (207)
T 1znw_A 82 QGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT-----------VFLAPPSWQDLQAR 150 (207)
T ss_dssp TTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE-----------EEEECSCHHHHHHH
T ss_pred cCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE-----------EEEECCCHHHHHHH
Confidence 6664311 1 11111 1 111222 445566666788888898 99999999999999
Q ss_pred CCCC----CHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhcc
Q 027067 166 SVAL----DYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 166 t~~L----D~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~~ 207 (229)
|+++ |+..++.+.+++.++++ .|.|+|++|||++++...+|.
T Consensus 151 ~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~ 197 (207)
T 1znw_A 151 LIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVS 197 (207)
T ss_dssp HHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHH
Confidence 9998 67788899999998864 589999999999999887763
No 74
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.94 E-value=3.7e-31 Score=220.15 Aligned_cols=177 Identities=11% Similarity=0.023 Sum_probs=113.1
Q ss_pred CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCC
Q 027067 22 AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFT 101 (229)
Q Consensus 22 ~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 101 (229)
....|+||||+|++|++++|+||||||||||+++|+|++ | |+|.+ |.++.........+..++|++|++.+++.++
T Consensus 9 ~~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 84 (218)
T 1z6g_A 9 HHSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKL 84 (218)
T ss_dssp -------------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHH
T ss_pred ccccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhh
Confidence 455799999999999999999999999999999999999 6 99999 7765432211123456788888766554332
Q ss_pred -HHHhHH---HHHHhcCc-cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHH-----HHHHhcCCCeEEEeCCCCCCCH
Q 027067 102 -VLDNVQ---WFEVLEGK-QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQL-----ARLLAIDRPIWLLDEPSVALDY 171 (229)
Q Consensus 102 -v~e~l~---~~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~l-----Aral~~~p~illlDEPt~~LD~ 171 (229)
..+++. +....++. ...+.++++..... ..+ .+|||||+||+++ |++|+.+|++++|||||+++|.
T Consensus 85 ~~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~-il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~ 160 (218)
T 1z6g_A 85 KNEDFLEYDNYANNFYGTLKSEYDKAKEQNKIC-LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNT 160 (218)
T ss_dssp HTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEE-EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCC
T ss_pred hccchhhhhhcccccCCCcHHHHHHHHhCCCcE-EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCC
Confidence 111111 10111111 12234455543321 222 5899999999999 8999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-------CCcEEEEEeCChhhHHhhhc
Q 027067 172 DGVRLLEYIIAEHRK-------KGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 172 ~~~~~l~~~l~~~~~-------~g~tii~vtH~~~~~~~~~~ 206 (229)
.+.+.+.+.+....+ .+.+.|+++|+++++...++
T Consensus 161 ~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~ 202 (218)
T 1z6g_A 161 ENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLK 202 (218)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHH
Confidence 877777766665432 45788999999887766543
No 75
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.94 E-value=6.8e-29 Score=220.92 Aligned_cols=157 Identities=15% Similarity=0.148 Sum_probs=126.3
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchh---hhh--hhcceEeecccc-cCCCC
Q 027067 27 RHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF---HQY--KLQLNWLSLKDA-VKEKF 100 (229)
Q Consensus 27 ~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~---~~~--~~~~~~~~~~~~-~~~~~ 100 (229)
..+||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++...... ..+ +.+++|++|++. +++..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 468999999999999999999999999999999999999999999987653211 112 357899999887 78888
Q ss_pred CHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCC--eEEEeCCCCCCCHHHHHHHH
Q 027067 101 TVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRP--IWLLDEPSVALDYDGVRLLE 178 (229)
Q Consensus 101 tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~--illlDEPt~~LD~~~~~~l~ 178 (229)
++++++.+.... ... ..+++.+|+.+..++++.+|| |||++||||++.+|+ +|+|| ||+|||+..+.
T Consensus 228 tv~e~l~~~~~~-~~d---~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~--- 296 (359)
T 2og2_A 228 VLSKAVKRGKEE-GYD---VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA--- 296 (359)
T ss_dssp HHHHHHHHHHHT-TCS---EEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH---
T ss_pred hHHHHHHHHHhC-CCH---HHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH---
Confidence 999999875421 111 124556777766777888999 999999999999999 99999 99999998652
Q ss_pred HHHHHHH-hCCcEEEEEeCC
Q 027067 179 YIIAEHR-KKGGIVIVATHL 197 (229)
Q Consensus 179 ~~l~~~~-~~g~tii~vtH~ 197 (229)
+.+. +.|.|+|++||.
T Consensus 297 ---~~~~~~~g~t~iiiThl 313 (359)
T 2og2_A 297 ---REFNEVVGITGLILTKL 313 (359)
T ss_dssp ---HHHHHHTCCCEEEEESC
T ss_pred ---HHHHHhcCCeEEEEecC
Confidence 2333 358999999994
No 76
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.94 E-value=1.2e-29 Score=217.95 Aligned_cols=150 Identities=15% Similarity=0.160 Sum_probs=99.1
Q ss_pred EEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHHhcCccc
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQG 117 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~ 117 (229)
.++|+||||||||||+|+|+|+..|++|+|.++|+++... .....+++++|++.+++.+||.||+.++.......
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~----~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~- 78 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKT----VEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNEN- 78 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCC----CSCCEEEESCC----CCEEEEECCCC--CCSBCTT-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcc----eeeeeeEEEeecCCCcCCceEEechhhhhhcccHH-
Confidence 4899999999999999999999999999999999887542 13457899999999999999999988754322111
Q ss_pred cHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q 027067 118 NSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHL 197 (229)
Q Consensus 118 ~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~ 197 (229)
..+.+..+....+.+..+.+||||||||+++|||++. ++++|||+++||+... ++++.+++. .+||++.|.
T Consensus 79 -~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~----~~l~~L~~~-~~vI~Vi~K 149 (270)
T 3sop_A 79 -CWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDL----EFMKHLSKV-VNIIPVIAK 149 (270)
T ss_dssp -CSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHH----HHHHHHHTT-SEEEEEETT
T ss_pred -HHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHH----HHHHHHHhc-CcEEEEEec
Confidence 1111222222456677788999999999999999887 9999999999999874 344555555 788888887
Q ss_pred hhhH
Q 027067 198 PIQI 201 (229)
Q Consensus 198 ~~~~ 201 (229)
.+.+
T Consensus 150 ~D~l 153 (270)
T 3sop_A 150 ADTM 153 (270)
T ss_dssp GGGS
T ss_pred cccC
Confidence 5533
No 77
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.93 E-value=1.3e-27 Score=210.56 Aligned_cols=122 Identities=16% Similarity=0.102 Sum_probs=95.7
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHH
Q 027067 25 ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLD 104 (229)
Q Consensus 25 iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e 104 (229)
+++++||.+++|++++|+||||||||||+++|+|+++|++|.|+++|.+.... ...+..+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~---~~~~~~i~~~~------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVF---KHHKNYTQLFF------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCC---SSCSSEEEEEC-------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeecccc---ccchhEEEEEe-------------
Confidence 78999999999999999999999999999999999999999999998642111 00111222211
Q ss_pred hHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 027067 105 NVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEH 184 (229)
Q Consensus 105 ~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~ 184 (229)
+ |||+||++||+||..+|++||+||||+. .+.+.++.+
T Consensus 224 ----------------------g-------------gg~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~ 261 (330)
T 2pt7_A 224 ----------------------G-------------GNITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVL 261 (330)
T ss_dssp ----------------------B-------------TTBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHH
T ss_pred ----------------------C-------------CChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHH
Confidence 0 8999999999999999999999999982 245566666
Q ss_pred HhCCcEEEEEeCChhhHHhhh
Q 027067 185 RKKGGIVIVATHLPIQIEDAM 205 (229)
Q Consensus 185 ~~~g~tii~vtH~~~~~~~~~ 205 (229)
...+.|+|++||+.+ +.+++
T Consensus 262 ~~g~~tvi~t~H~~~-~~~~~ 281 (330)
T 2pt7_A 262 CSGHKGTLTTLHAGS-SEEAF 281 (330)
T ss_dssp HTTCCCEEEEEECSS-HHHHH
T ss_pred hcCCCEEEEEEcccH-HHHHh
Confidence 543457999999987 44443
No 78
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.92 E-value=2e-26 Score=227.98 Aligned_cols=158 Identities=18% Similarity=0.186 Sum_probs=118.4
Q ss_pred CCcEEEEe-----EEEEe-CCeeeeeeeeEEEeC-------CcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeC
Q 027067 8 LPRLLLKN-----VSCMR-NAQQILRHVNISIHD-------GGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI 74 (229)
Q Consensus 8 ~~~l~l~~-----l~~~~-~~~~iL~~vsl~i~~-------Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~ 74 (229)
.++|+++| |++.| ++..+++|++|++.+ |++++|+||||||||||||++ |++.+
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------------ 814 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------------ 814 (1022)
T ss_dssp CCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH------------
T ss_pred CceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH------------
Confidence 45799999 99999 778899999999987 999999999999999999999 99863
Q ss_pred CCCchhhhhhhcce-EeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHH
Q 027067 75 TQSGIFHQYKLQLN-WLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLL 153 (229)
Q Consensus 75 ~~~~~~~~~~~~~~-~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral 153 (229)
..++| |+|++.. .+++.+++.. .+|+.+...+..+++|+++++ +++|+++
T Consensus 815 ---------~aqiG~~Vpq~~~---~l~v~d~I~~----------------rig~~d~~~~~~stf~~em~~-~a~al~l 865 (1022)
T 2o8b_B 815 ---------MAQMGCYVPAEVC---RLTPIDRVFT----------------RLGASDRIMSGESTFFVELSE-TASILMH 865 (1022)
T ss_dssp ---------HHTTTCCEESSEE---EECCCSBEEE----------------ECC---------CHHHHHHHH-HHHHHHH
T ss_pred ---------HhheeEEeccCcC---CCCHHHHHHH----------------HcCCHHHHhhchhhhHHHHHH-HHHHHHh
Confidence 12455 7887653 3456555411 134444444556788888775 9999999
Q ss_pred hcCCCeEEEeCCCCCCCHHH-HHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhcc
Q 027067 154 AIDRPIWLLDEPSVALDYDG-VRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMNL 207 (229)
Q Consensus 154 ~~~p~illlDEPt~~LD~~~-~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~~ 207 (229)
+.+|+++||||||+|+|+.. ...++.+++.+.++ |.++|++||+.+.+..+++.
T Consensus 866 a~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~ 921 (1022)
T 2o8b_B 866 ATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQN 921 (1022)
T ss_dssp CCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSC
T ss_pred CCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCc
Confidence 99999999999999999986 46678889888776 89999999999998887653
No 79
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.92 E-value=1e-29 Score=222.52 Aligned_cols=163 Identities=11% Similarity=0.006 Sum_probs=123.9
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEE-----------------------EeCCcEEEEEcCCCccHHHHHHHHHCCCCCCcc
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNIS-----------------------IHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAG 65 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~-----------------------i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G 65 (229)
..|+++||++.|+ ++++++++. +++|+++||+||||||||||+++|+|+++|+.|
T Consensus 42 ~~i~~~~v~~~y~--p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G 119 (312)
T 3aez_A 42 EQIDLLEVEEVYL--PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDH 119 (312)
T ss_dssp CCCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTT
T ss_pred CeEEeeehhhhhh--hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccCC
Confidence 4688999999884 566766664 899999999999999999999999999999765
Q ss_pred EEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHHhc--C--ccccHHHHHHHhCCChhhcCCCCCCCh
Q 027067 66 EILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLE--G--KQGNSLPALELMGLGRLAKEKARMLSM 141 (229)
Q Consensus 66 ~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~--~--~~~~~~~~l~~~~l~~~~~~~~~~LSg 141 (229)
. ..+++++|+..+++. |+.||+.+..... . ......+.++.++ ....+.++.+|||
T Consensus 120 ~------------------~~v~~v~qd~~~~~~-t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~-~~~~~~~~~~lS~ 179 (312)
T 3aez_A 120 H------------------PRVDLVTTDGFLYPN-AELQRRNLMHRKGFPESYNRRALMRFVTSVK-SGSDYACAPVYSH 179 (312)
T ss_dssp C------------------CCEEEEEGGGGBCCH-HHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH-TTCSCEEEEEEET
T ss_pred C------------------CeEEEEecCccCCcc-cHHHHHHHHHhcCCChHHHHHHHHHHHHHhC-CCcccCCcccCCh
Confidence 3 247889998888877 9999976532111 0 1123556777777 5455677889999
Q ss_pred hHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhH
Q 027067 142 GQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQI 201 (229)
Q Consensus 142 GqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~ 201 (229)
||+||+++|+|++.+|+|||+|||+..+|+... .+.+.=-.+|+++|+.+..
T Consensus 180 G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~~--------~l~~~~D~~I~V~a~~~~~ 231 (312)
T 3aez_A 180 LHYDIIPGAEQVVRHPDILILEGLNVLQTGPTL--------MVSDLFDFSLYVDARIEDI 231 (312)
T ss_dssp TTTEEEEEEEEEECSCSEEEEECTTTTCCCSSC--------CGGGGCSEEEEEEECHHHH
T ss_pred hhhhhhhhHHHhccCCCEEEECCccccCCcchH--------HHHHhcCcEEEEECCHHHH
Confidence 999999999999999999999999999985211 1122112457788887664
No 80
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.92 E-value=2.8e-28 Score=222.33 Aligned_cols=171 Identities=12% Similarity=0.083 Sum_probs=133.8
Q ss_pred CcEEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCE---eCCCCc----hh
Q 027067 9 PRLLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGH---DITQSG----IF 80 (229)
Q Consensus 9 ~~l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~---~~~~~~----~~ 80 (229)
++++++++++.|+ +.++|+++ |+|.+|++++|+||||||||||+++|+|+.+|++|.|.++|+ ++.... ..
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~ 208 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGP 208 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHH
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccc
Confidence 5799999999997 78899999 999999999999999999999999999999999999999997 442210 01
Q ss_pred hhhhhcceEeecc-cccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCe
Q 027067 81 HQYKLQLNWLSLK-DAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPI 159 (229)
Q Consensus 81 ~~~~~~~~~~~~~-~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~i 159 (229)
...++.++|++|. ..+++.+++.+|+.+......... -....+.+ .+..||+|| |||+|| +.+|++
T Consensus 209 ~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~--------~~v~~~ld-~l~~lS~g~-qrvslA---l~~p~~ 275 (438)
T 2dpy_A 209 DGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRG--------QHVLLIMD-SLTRYAMAQ-REIALA---IGEPPA 275 (438)
T ss_dssp HHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTT--------CEEEEEEE-CHHHHHHHH-HHHHHH---TTCCCC
T ss_pred cccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCC--------CCHHHHHH-hHHHHHHHH-HHHHHH---hCCCcc
Confidence 1245678999984 556677788888876543221100 00011122 267899999 999999 889988
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh---C-Cc-----EEEEEeCChh
Q 027067 160 WLLDEPSVALDYDGVRLLEYIIAEHRK---K-GG-----IVIVATHLPI 199 (229)
Q Consensus 160 lllDEPt~~LD~~~~~~l~~~l~~~~~---~-g~-----tii~vtH~~~ 199 (229)
|+|||+.....+.+++.++.+ + |. ||+++|||++
T Consensus 276 ------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~ 318 (438)
T 2dpy_A 276 ------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ 318 (438)
T ss_dssp ------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC
T ss_pred ------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc
Confidence 999999999999999988755 3 64 9999999985
No 81
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.92 E-value=2.6e-28 Score=226.98 Aligned_cols=171 Identities=13% Similarity=0.096 Sum_probs=124.1
Q ss_pred CCcEEEEeEEEEeCCeeeeeeeeE-EEeCCcEEEEEcCCCccHHHHHHH--HHCCCCCCccEEEEcCEeCCCCchhhhhh
Q 027067 8 LPRLLLKNVSCMRNAQQILRHVNI-SIHDGGALVLTGTNGSGKSTFLRM--LAGFSKPSAGEILWNGHDITQSGIFHQYK 84 (229)
Q Consensus 8 ~~~l~l~~l~~~~~~~~iL~~vsl-~i~~Ge~~~iiG~NGsGKSTLl~~--i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~ 84 (229)
.++++.+++.+..++.++|++||| .|++|++++|+||||||||||+++ ++|+++|++|.|+++|++... ......
T Consensus 10 ~~~~~~~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~--~~~~~~ 87 (525)
T 1tf7_A 10 NNNSEHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQ--DIIKNA 87 (525)
T ss_dssp ----CCSSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH--HHHHHH
T ss_pred CCCccccccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHH--HHHHHH
Confidence 456777778777778899999999 999999999999999999999999 789999999999999987321 112334
Q ss_pred hcceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeC
Q 027067 85 LQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDE 164 (229)
Q Consensus 85 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDE 164 (229)
..++|++|++....+ +.+.. ... .....++++.+++.+..++.+.+||+|| |+++++||
T Consensus 88 ~~~g~~~q~~~~~~~------l~~~~-~~~-~~~~~~~l~~~~l~~~~~~~~~~LS~g~-------------~~~lilDe 146 (525)
T 1tf7_A 88 RSFGWDLAKLVDEGK------LFILD-ASP-DPEGQEVVGGFDLSALIERINYAIQKYR-------------ARRVSIDS 146 (525)
T ss_dssp GGGTCCHHHHHHTTS------EEEEE-CCC-CSSCCSCCSSHHHHHHHHHHHHHHHHHT-------------CSEEEEEC
T ss_pred HHcCCChHHhhccCc------EEEEe-cCc-ccchhhhhcccCHHHHHHHHHHHHHHcC-------------CCEEEECC
Confidence 567888876542211 10000 000 0111123344455555666667777764 78999999
Q ss_pred CCCC-----CCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhH
Q 027067 165 PSVA-----LDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQI 201 (229)
Q Consensus 165 Pt~~-----LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~ 201 (229)
||+. +|+..++.+.++++.+++.|.|||++||+++++
T Consensus 147 ~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~ 188 (525)
T 1tf7_A 147 VTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEY 188 (525)
T ss_dssp STTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSS
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCc
Confidence 9984 688999999999999988899999999999875
No 82
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.92 E-value=9.2e-30 Score=221.90 Aligned_cols=132 Identities=14% Similarity=0.159 Sum_probs=100.1
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW 89 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 89 (229)
+|+++||++.|+ .++|+++||+|++|++++|+||||||||||+++|+|++ +|+|...
T Consensus 101 ~i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~------------------- 157 (305)
T 2v9p_A 101 FFNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSF------------------- 157 (305)
T ss_dssp HHHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEECG-------------------
T ss_pred eEEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEEE-------------------
Confidence 488999999998 78999999999999999999999999999999999999 7998532
Q ss_pred eecccccCCCCCHHH-hHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 027067 90 LSLKDAVKEKFTVLD-NVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVA 168 (229)
Q Consensus 90 ~~~~~~~~~~~tv~e-~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~ 168 (229)
++|.+.++.. |+.+ |+.+.. .......+.++.+ +.+..+ +..|||||||| ||||+.+|+||| |++
T Consensus 158 v~q~~~lf~~-ti~~~ni~~~~---~~~~~~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll~~p~iLl----Ts~ 223 (305)
T 2v9p_A 158 ANHKSHFWLA-SLADTRAALVD---DATHACWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQIKAPPLLV----TSN 223 (305)
T ss_dssp GGTTSGGGGG-GGTTCSCEEEE---EECHHHHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEECCCCEEE----EES
T ss_pred ecCccccccc-cHHHHhhccCc---cccHHHHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHhCCCCEEE----ECC
Confidence 2233333332 4554 554421 0111233445543 433344 88999999999 999999999999 999
Q ss_pred CCHHHHHHHH
Q 027067 169 LDYDGVRLLE 178 (229)
Q Consensus 169 LD~~~~~~l~ 178 (229)
||+.+++.+.
T Consensus 224 LD~~~~~~i~ 233 (305)
T 2v9p_A 224 IDVQAEDRYL 233 (305)
T ss_dssp SCSTTCGGGG
T ss_pred CCHHHHHHHH
Confidence 9999877664
No 83
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.91 E-value=2.8e-24 Score=189.67 Aligned_cols=74 Identities=32% Similarity=0.363 Sum_probs=64.7
Q ss_pred hcCCCCCCChhHHH------HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhh
Q 027067 132 AKEKARMLSMGQRK------RLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAM 205 (229)
Q Consensus 132 ~~~~~~~LSgGqkq------Rv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~ 205 (229)
.++++.+||||||| |+++|+|++.+|++|||||||++||+..+..+.+++..+.+.|.|||+||||.+ +.+.+
T Consensus 242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~-~~~~~ 320 (339)
T 3qkt_A 242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAA 320 (339)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGC
T ss_pred CcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH-HHHhC
Confidence 35678999999999 677888888999999999999999999999999999998777889999999964 45554
Q ss_pred c
Q 027067 206 N 206 (229)
Q Consensus 206 ~ 206 (229)
|
T Consensus 321 d 321 (339)
T 3qkt_A 321 D 321 (339)
T ss_dssp S
T ss_pred C
Confidence 4
No 84
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.91 E-value=2.8e-26 Score=193.36 Aligned_cols=157 Identities=11% Similarity=0.033 Sum_probs=103.7
Q ss_pred eCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCC
Q 027067 20 RNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEK 99 (229)
Q Consensus 20 ~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (229)
-+++++|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ .....+++++++. +++.
T Consensus 9 ~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~-----------~~~~~i~~v~~d~-~~~~ 72 (245)
T 2jeo_A 9 SGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE-----------QRQRKVVILSQDR-FYKV 72 (245)
T ss_dssp --------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC-----------GGGCSEEEEEGGG-GBCC
T ss_pred CCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc-----------ccCCceEEEeCCc-Cccc
Confidence 46778999999999999999999999999999999999976 544443 1245688999884 7778
Q ss_pred CCHHHhHHHHHHhcC---c-ccc---HHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q 027067 100 FTVLDNVQWFEVLEG---K-QGN---SLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYD 172 (229)
Q Consensus 100 ~tv~e~l~~~~~~~~---~-~~~---~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~ 172 (229)
+++.+++.+...... . ... ..+.++. +.+..+.++..||+||+||+++ ++++.+|+++|+|||+...+..
T Consensus 73 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~--l~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~ 149 (245)
T 2jeo_A 73 LTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKN--IVEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE 149 (245)
T ss_dssp CCHHHHHHHHTTCCCTTSGGGBCHHHHHHHHHH--HHTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH
T ss_pred cCHhHhhhhhccCCCCCCcccccHHHHHHHHHH--HHCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH
Confidence 899998765432111 1 111 2334443 2344567789999999999988 6888999999999998888754
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhh
Q 027067 173 GVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAM 205 (229)
Q Consensus 173 ~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~ 205 (229)
+ ..+ .+.+|+++||+...+...+
T Consensus 150 ----l----~~~--~~~~i~v~th~~~~~~r~~ 172 (245)
T 2jeo_A 150 ----I----RDM--FHLRLFVDTDSDVRLSRRV 172 (245)
T ss_dssp ----H----HTT--CSEEEEEECCHHHHHHHHH
T ss_pred ----H----HHh--cCeEEEEECCHHHHHHHHH
Confidence 1 111 3789999999855555443
No 85
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.90 E-value=2.1e-26 Score=200.44 Aligned_cols=164 Identities=15% Similarity=0.121 Sum_probs=87.8
Q ss_pred EeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCC-CCCCccEEEEcCEeCCCCchhhhhhhcceEeec
Q 027067 14 KNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGF-SKPSAGEILWNGHDITQSGIFHQYKLQLNWLSL 92 (229)
Q Consensus 14 ~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl-~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~ 92 (229)
+||+++|+++.++++++|+| +|+||||||||||+++|+|. ..|++| |.++|.++... . ....++++++
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t-~---~~~~~~~~~q 70 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERT-V---QIEASTVEIE 70 (301)
T ss_dssp ----------------CEEE------EEEEETTSSHHHHHHHHHC-----------------------------CEEEEC
T ss_pred CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCc-c---eEeeEEEEec
Confidence 58899999999999999999 99999999999999999998 889999 88888776431 1 1234677887
Q ss_pred ccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCC-CCH
Q 027067 93 KDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVA-LDY 171 (229)
Q Consensus 93 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~-LD~ 171 (229)
...+...+++.|+..++..... .+........ +.+..++++.++|||||||+.+|||++ ++++||||++ ||+
T Consensus 71 ~~~~~~~ltv~Dt~g~~~~~~~-~e~~~~l~~~--l~~~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~ 143 (301)
T 2qnr_A 71 ERGVKLRLTVVDTPGYGDAINC-RDCFKTIISY--IDEQFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKP 143 (301)
T ss_dssp ---CCEEEEEEEEC------------CTTHHHH--HHHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCH
T ss_pred CCCcccCcchhhhhhhhhhcCc-HHHHHHHHHH--HHHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCH
Confidence 7777777888888766432211 0011111111 223456788999999999999999986 9999999985 999
Q ss_pred HHHHHHHHHHHHHHhC-CcEEEEEeCChh
Q 027067 172 DGVRLLEYIIAEHRKK-GGIVIVATHLPI 199 (229)
Q Consensus 172 ~~~~~l~~~l~~~~~~-g~tii~vtH~~~ 199 (229)
... ++++.+.+. +.++|+++||+.
T Consensus 144 ~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 144 LDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred HHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 874 445555443 789999999974
No 86
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.90 E-value=6e-25 Score=204.34 Aligned_cols=153 Identities=13% Similarity=0.097 Sum_probs=113.2
Q ss_pred cEEEEeEEEEeCC-eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccE--EEEcCEeCCCCchhhhhhhc
Q 027067 10 RLLLKNVSCMRNA-QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGE--ILWNGHDITQSGIFHQYKLQ 86 (229)
Q Consensus 10 ~l~l~~l~~~~~~-~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~--I~~~g~~~~~~~~~~~~~~~ 86 (229)
.+++++++..|++ ..+| +..|.+|++++|+||||||||||+++++|+..|+ |+ +++.+++.. .+
T Consensus 257 ~~~~~~l~~g~~~ld~vL---~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~ee~~-----~~---- 323 (525)
T 1tf7_A 257 RSSNVRVSSGVVRLDEMC---GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KERAILFAYEESR-----AQ---- 323 (525)
T ss_dssp CCCCCEECCSCHHHHHHT---TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEESSSCH-----HH----
T ss_pred ccccceeecChHHHHHHh---CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEEeCCH-----HH----
Confidence 3556666544432 2233 3489999999999999999999999999998875 64 344433210 01
Q ss_pred ceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCC
Q 027067 87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPS 166 (229)
Q Consensus 87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt 166 (229)
+.++.. .. +. ...+ +...|+..+.+.++.+||+||+||+++|+++..+|++||+| ||
T Consensus 324 ---------------l~~~~~---~~-g~--~~~~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~ 380 (525)
T 1tf7_A 324 ---------------LLRNAY---SW-GM--DFEE-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SL 380 (525)
T ss_dssp ---------------HHHHHH---TT-SC--CHHH-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CH
T ss_pred ---------------HHHHHH---Hc-CC--CHHH-HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-Ch
Confidence 111110 00 00 1112 33456666778889999999999999999999999999999 99
Q ss_pred CCCCHH-----HHHHHHHHHHHHHhCCcEEEEEeCCh
Q 027067 167 VALDYD-----GVRLLEYIIAEHRKKGGIVIVATHLP 198 (229)
Q Consensus 167 ~~LD~~-----~~~~l~~~l~~~~~~g~tii~vtH~~ 198 (229)
++||.. .++.+.++++.+++.|.|||++||+.
T Consensus 381 ~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 381 SALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp HHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred HHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 999999 89999999999988899999999998
No 87
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.90 E-value=9.8e-24 Score=195.84 Aligned_cols=71 Identities=18% Similarity=0.160 Sum_probs=64.8
Q ss_pred CCCCCC-ChhHHHHHHHHHHHhcCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 134 EKARML-SMGQRKRLQLARLLAIDR--PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 134 ~~~~~L-SgGqkqRv~lAral~~~p--~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
+++.+| ||||+|||+||+||+.+| ++|||||||+|||+.++..+.+++.++++ |.|||+|||+++.+.. +|
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~~~~~-~d 465 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQIAAR-AH 465 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHHHHHH-SS
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHh-CC
Confidence 456778 999999999999999999 99999999999999999999999999877 8999999999987764 44
No 88
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.90 E-value=1.4e-25 Score=198.88 Aligned_cols=171 Identities=13% Similarity=0.080 Sum_probs=119.3
Q ss_pred CcEEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchh------h
Q 027067 9 PRLLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF------H 81 (229)
Q Consensus 9 ~~l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~------~ 81 (229)
++++++++++.|+ +..+|+++ |+|.+||+++|+||||||||||+++|+|+.+|+.|.|.+.|++......+ .
T Consensus 44 ~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~ 122 (347)
T 2obl_A 44 DPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQS 122 (347)
T ss_dssp CSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHH
T ss_pred CCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhh
Confidence 5799999999997 78899999 99999999999999999999999999999999999999988652110000 0
Q ss_pred hhhhcceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHHhcCCCeE
Q 027067 82 QYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARLLAIDRPIW 160 (229)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~il 160 (229)
.....+.++++.+ .+..+.+....... ...+.+...+.. -..-..+..||+|| |||++| +.+|++
T Consensus 123 ~~~~~v~~~~~~~-----~~~~~r~~~~~~~~----~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~- 188 (347)
T 2obl_A 123 TLSKCVLVVTTSD-----RPALERMKAAFTAT----TIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV- 188 (347)
T ss_dssp HHTTEEEEEECTT-----SCHHHHHHHHHHHH----HHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC-
T ss_pred hhhceEEEEECCC-----CCHHHHHHHHHHHH----HHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc-
Confidence 1122344444321 12222221110000 000111111100 00014688999999 999999 688887
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh--CCc-----EEEEEeCChh
Q 027067 161 LLDEPSVALDYDGVRLLEYIIAEHRK--KGG-----IVIVATHLPI 199 (229)
Q Consensus 161 llDEPt~~LD~~~~~~l~~~l~~~~~--~g~-----tii~vtH~~~ 199 (229)
|+|+|+.....+.++++++.+ .|. ||+++|||++
T Consensus 189 -----t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~ 229 (347)
T 2obl_A 189 -----RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN 229 (347)
T ss_dssp -----BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC
T ss_pred -----ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC
Confidence 999999999999999998864 477 8999999987
No 89
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.89 E-value=9.2e-25 Score=186.56 Aligned_cols=134 Identities=18% Similarity=0.194 Sum_probs=97.6
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCC-ccEEEEcCEeCCCCchhhhhhhcce
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPS-AGEILWNGHDITQSGIFHQYKLQLN 88 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~-~G~I~~~g~~~~~~~~~~~~~~~~~ 88 (229)
.++++++++. ++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.... ....+
T Consensus 5 ~~~l~~l~~~----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~-----~~~~~ 73 (261)
T 2eyu_A 5 IPEFKKLGLP----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF-----KHKKS 73 (261)
T ss_dssp -CCGGGSSCC----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC-----CCSSS
T ss_pred CCChHHCCCH----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec-----CCcce
Confidence 3556677643 5899999 9999999999999999999999999999998 999999887653210 01112
Q ss_pred EeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 027067 89 WLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVA 168 (229)
Q Consensus 89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~ 168 (229)
+++|. .+++.. ..| |++||+||..+|+++++||||
T Consensus 74 ~v~q~-------------------------------~~gl~~------~~l------~~~la~aL~~~p~illlDEp~-- 108 (261)
T 2eyu_A 74 IVNQR-------------------------------EVGEDT------KSF------ADALRAALREDPDVIFVGEMR-- 108 (261)
T ss_dssp EEEEE-------------------------------EBTTTB------SCH------HHHHHHHHHHCCSEEEESCCC--
T ss_pred eeeHH-------------------------------HhCCCH------HHH------HHHHHHHHhhCCCEEEeCCCC--
Confidence 22210 122221 122 899999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhh
Q 027067 169 LDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAM 205 (229)
Q Consensus 169 LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~ 205 (229)
|+.+...+ ++. .+.|.+|+++||+.+ +..++
T Consensus 109 -D~~~~~~~---l~~-~~~g~~vl~t~H~~~-~~~~~ 139 (261)
T 2eyu_A 109 -DLETVETA---LRA-AETGHLVFGTLHTNT-AIDTI 139 (261)
T ss_dssp -SHHHHHHH---HHH-HHTTCEEEEEECCSS-HHHHH
T ss_pred -CHHHHHHH---HHH-HccCCEEEEEeCcch-HHHHH
Confidence 88875433 333 356899999999976 44443
No 90
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.89 E-value=6.8e-24 Score=207.57 Aligned_cols=151 Identities=17% Similarity=0.236 Sum_probs=102.3
Q ss_pred cEEEEeEEEEe-------CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC-CccEEEEcCEeCCCCchhh
Q 027067 10 RLLLKNVSCMR-------NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP-SAGEILWNGHDITQSGIFH 81 (229)
Q Consensus 10 ~l~l~~l~~~~-------~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-~~G~I~~~g~~~~~~~~~~ 81 (229)
.+.+++...-. +++.+++|+||++++|++++|+||||||||||||+++++.-. ..|
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g---------------- 703 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIG---------------- 703 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHT----------------
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcC----------------
Confidence 46666655422 356799999999999999999999999999999999764211 001
Q ss_pred hhhhcceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEE
Q 027067 82 QYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWL 161 (229)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ill 161 (229)
.+++...... .+.+ .++..+++.+...+..+++|+||+|++.++++ +.+|+++|
T Consensus 704 ------~~vpa~~~~i---~~~d----------------~i~~~ig~~d~l~~~~stfs~em~~~~~il~~-a~~p~LlL 757 (918)
T 3thx_B 704 ------SYVPAEEATI---GIVD----------------GIFTRMGAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVI 757 (918)
T ss_dssp ------CCBSSSEEEE---ECCS----------------EEEEEC----------CCHHHHHHHHHHHHHH-CCTTCEEE
T ss_pred ------ccccchhhhh---hHHH----------------HHHHhCChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEE
Confidence 1111110000 0000 01112333444456678999999999999999 89999999
Q ss_pred EeCCCCCCCHHHHHHHH-HHHHHHHh-CCcEEEEEeCChhhHH
Q 027067 162 LDEPSVALDYDGVRLLE-YIIAEHRK-KGGIVIVATHLPIQIE 202 (229)
Q Consensus 162 lDEPt~~LD~~~~~~l~-~~l~~~~~-~g~tii~vtH~~~~~~ 202 (229)
|||||+|||+.....+. .+++.+.+ .|.|+|++||+.+..+
T Consensus 758 LDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~ 800 (918)
T 3thx_B 758 LDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCE 800 (918)
T ss_dssp EESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHH
Confidence 99999999999777665 77777754 5899999999987654
No 91
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.89 E-value=2.3e-24 Score=180.14 Aligned_cols=172 Identities=15% Similarity=0.128 Sum_probs=104.0
Q ss_pred cEEEEeEEEEeCC-eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH--CCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067 10 RLLLKNVSCMRNA-QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLA--GFSKPSAGEILWNGHDITQSGIFHQYKLQ 86 (229)
Q Consensus 10 ~l~l~~l~~~~~~-~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~--Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 86 (229)
++++++++..+.+ ..++.+ .|++|++++|+||||||||||+++|+ |+.++..|.+++++..... ........
T Consensus 6 ~~~~~~i~tg~~~lD~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 80 (251)
T 2ehv_A 6 YQPVRRVKSGIPGFDELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR--DLRREMAS 80 (251)
T ss_dssp --CCCEECCSCTTTGGGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH--HHHHHHHT
T ss_pred ccccceeecCCHhHHHHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH--HHHHHHHH
Confidence 3455555544432 123322 78999999999999999999999999 7756677888887654321 11122344
Q ss_pred ceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCC
Q 027067 87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPS 166 (229)
Q Consensus 87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt 166 (229)
+++.+++......+++.++........ . ..........+.++..+...+..-..+|+++++||||
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~~~~~~--~-------------~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~ 145 (251)
T 2ehv_A 81 FGWDFEKYEKEGKIAIVDGVSSVVGLP--S-------------EEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIP 145 (251)
T ss_dssp TTCCHHHHHHTTSEEEEC----------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHH
T ss_pred cCCChHHHhhcCCEEEEEccccccccc--c-------------ccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHH
Confidence 566555443344444444322111000 0 0001112223445555555555556899999999999
Q ss_pred CCCC-----HHHHHHHHHHHHHHHhCCcEEEEEeCChhhH
Q 027067 167 VALD-----YDGVRLLEYIIAEHRKKGGIVIVATHLPIQI 201 (229)
Q Consensus 167 ~~LD-----~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~ 201 (229)
+++| +..++.+.++++.+++.|+|||++||+++++
T Consensus 146 ~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~ 185 (251)
T 2ehv_A 146 SIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQ 185 (251)
T ss_dssp HHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC---
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCC
Confidence 9997 6677779999999988899999999998887
No 92
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.89 E-value=7.4e-24 Score=182.83 Aligned_cols=166 Identities=17% Similarity=0.110 Sum_probs=106.2
Q ss_pred CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCcc-EEEEcCEeCCCCchhhhhhhcceEeecccccCCCC
Q 027067 22 AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAG-EILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKF 100 (229)
Q Consensus 22 ~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G-~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (229)
+.++|+++++.+++|++++|+||||||||||++.|+|...|++| .|.+.+.+... .+...++..+.+... +
T Consensus 21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~----~~~~~r~~~~~~~~~----~ 92 (296)
T 1cr0_A 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESV----EETAEDLIGLHNRVR----L 92 (296)
T ss_dssp SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCH----HHHHHHHHHHHTTCC----G
T ss_pred CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCH----HHHHHHHHHHHcCCC----h
Confidence 35689999999999999999999999999999999999999888 77554433221 122222222222211 1
Q ss_pred CHHHhHHHHHHhcCc-cccHHHHHHHhCCChhhcCCCCCCChhH-HHHHHHHHHHhcCCCeEEEeCCCC---C---CCH-
Q 027067 101 TVLDNVQWFEVLEGK-QGNSLPALELMGLGRLAKEKARMLSMGQ-RKRLQLARLLAIDRPIWLLDEPSV---A---LDY- 171 (229)
Q Consensus 101 tv~e~l~~~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~LSgGq-kqRv~lAral~~~p~illlDEPt~---~---LD~- 171 (229)
++.+++......... .....++++..++ .....+..+|.+| +||+. |+++..+|+++|+||||+ + +|.
T Consensus 93 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~l--~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~ 169 (296)
T 1cr0_A 93 RQSDSLKREIIENGKFDQWFDELFGNDTF--HLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDER 169 (296)
T ss_dssp GGCHHHHHHHHHHTHHHHHHHHHHSSSCE--EEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------C
T ss_pred hhccccccCCCCHHHHHHHHHHHhccCCE--EEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHH
Confidence 223333322111110 0111122221222 1334457899999 67776 999999999999999999 5 455
Q ss_pred HHHHHHHHHHHHHHh-CCcEEEEEeCCh
Q 027067 172 DGVRLLEYIIAEHRK-KGGIVIVATHLP 198 (229)
Q Consensus 172 ~~~~~l~~~l~~~~~-~g~tii~vtH~~ 198 (229)
.....+.+.|+.+++ .|.|||++||+.
T Consensus 170 ~~~~~i~~~L~~la~~~~~~vi~vsh~~ 197 (296)
T 1cr0_A 170 KMIDNLMTKLKGFAKSTGVVLVVICHLK 197 (296)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEEecC
Confidence 556678888888754 499999999995
No 93
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.88 E-value=5.4e-24 Score=205.25 Aligned_cols=144 Identities=21% Similarity=0.224 Sum_probs=107.0
Q ss_pred CcEEEEeEEEEe---CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC-CCccEEEEcCEeCCCCchhhhhh
Q 027067 9 PRLLLKNVSCMR---NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK-PSAGEILWNGHDITQSGIFHQYK 84 (229)
Q Consensus 9 ~~l~l~~l~~~~---~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~-p~~G~I~~~g~~~~~~~~~~~~~ 84 (229)
+.+++++...-. +++.+++|+||+ |++++|+||||||||||||+|+|+.. ++.|.+. .. ..
T Consensus 549 ~~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v------pa------~~ 613 (765)
T 1ewq_A 549 DRLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV------PA------EE 613 (765)
T ss_dssp SSEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB------SS------SE
T ss_pred CcEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee------eh------hc
Confidence 357777774333 456789999999 99999999999999999999999874 6777642 11 12
Q ss_pred hcceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHH--hcCCCeEEE
Q 027067 85 LQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLL--AIDRPIWLL 162 (229)
Q Consensus 85 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral--~~~p~illl 162 (229)
..++++++ ++..+++.||+.. .+|+|+++++.+|+++ +.+|+++||
T Consensus 614 ~~i~~v~~---i~~~~~~~d~l~~-----------------------------g~S~~~~e~~~la~il~~a~~p~LlLL 661 (765)
T 1ewq_A 614 AHLPLFDG---IYTRIGASDDLAG-----------------------------GKSTFMVEMEEVALILKEATENSLVLL 661 (765)
T ss_dssp EEECCCSE---EEEECCC-----------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEE
T ss_pred cceeeHHH---hhccCCHHHHHHh-----------------------------cccHHHHHHHHHHHHHHhccCCCEEEE
Confidence 23455443 4555666665431 3689999999999999 999999999
Q ss_pred eCC---CCCCCHHHH-HHHHHHHHHHHhCCcEEEEEeCChhhHH
Q 027067 163 DEP---SVALDYDGV-RLLEYIIAEHRKKGGIVIVATHLPIQIE 202 (229)
Q Consensus 163 DEP---t~~LD~~~~-~~l~~~l~~~~~~g~tii~vtH~~~~~~ 202 (229)
||| |++||..+. ..+.+.+.+ .|.++|++||+.+...
T Consensus 662 DEpgrGTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~l~~ 702 (765)
T 1ewq_A 662 DEVGRGTSSLDGVAIATAVAEALHE---RRAYTLFATHYFELTA 702 (765)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHHHHT
T ss_pred ECCCCCCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHH
Confidence 999 999998875 456666654 5889999999987754
No 94
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.88 E-value=2.1e-24 Score=188.15 Aligned_cols=151 Identities=15% Similarity=0.148 Sum_probs=106.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchh---hhh--hhcceEeecccccCCCCCHHHhHHHH
Q 027067 35 DGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF---HQY--KLQLNWLSLKDAVKEKFTVLDNVQWF 109 (229)
Q Consensus 35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~tv~e~l~~~ 109 (229)
+|++++|+||||||||||+++|+|+++|++|+|.+.|.++...... ..+ +.++++++|.+..++..++++|+.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999997653211 111 35689999998888888999998764
Q ss_pred HHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCC--eEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 027067 110 EVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRP--IWLLDEPSVALDYDGVRLLEYIIAEHRK- 186 (229)
Q Consensus 110 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~--illlDEPt~~LD~~~~~~l~~~l~~~~~- 186 (229)
... ... ..+++..|+.+...+.+ +..++||++||||++.+|+ ++.|| |+++. .+.+.+..+.+
T Consensus 181 ~~~-~~d---~~llDt~G~~~~~~~~~---~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~------~~~~~~~~~~~~ 246 (304)
T 1rj9_A 181 KAR-GYD---LLFVDTAGRLHTKHNLM---EELKKVKRAIAKADPEEPKEVWLVLD-AVTGQ------NGLEQAKKFHEA 246 (304)
T ss_dssp HHH-TCS---EEEECCCCCCTTCHHHH---HHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCT------HHHHHHHHHHHH
T ss_pred HhC-CCC---EEEecCCCCCCchHHHH---HHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHH------HHHHHHHHHHHH
Confidence 321 111 01222334433222333 4445899999999999999 55555 44443 34444555543
Q ss_pred CCcEEEEEeCChh
Q 027067 187 KGGIVIVATHLPI 199 (229)
Q Consensus 187 ~g~tii~vtH~~~ 199 (229)
.|.|+|++||+..
T Consensus 247 ~~~t~iivTh~d~ 259 (304)
T 1rj9_A 247 VGLTGVIVTKLDG 259 (304)
T ss_dssp HCCSEEEEECTTS
T ss_pred cCCcEEEEECCcc
Confidence 3889999999843
No 95
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.88 E-value=1.3e-22 Score=180.50 Aligned_cols=62 Identities=26% Similarity=0.262 Sum_probs=56.0
Q ss_pred cCCCC-CCChhHHHHHHHHHHHh---------cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q 027067 133 KEKAR-MLSMGQRKRLQLARLLA---------IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHL 197 (229)
Q Consensus 133 ~~~~~-~LSgGqkqRv~lAral~---------~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~ 197 (229)
++++. .||+|||||++||++|+ .+|+||||||||++||+..++.+.+.+..+. .|+|++||.
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~ 330 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL 330 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec
Confidence 34566 79999999999999999 8999999999999999999999999987763 699999994
No 96
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.87 E-value=5.4e-22 Score=180.04 Aligned_cols=67 Identities=31% Similarity=0.364 Sum_probs=59.9
Q ss_pred CCCCChhHHHHHHHHHHHh----cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHH
Q 027067 136 ARMLSMGQRKRLQLARLLA----IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIE 202 (229)
Q Consensus 136 ~~~LSgGqkqRv~lAral~----~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~ 202 (229)
+..||||||||++||++|+ .+|+++||||||++||+..+..+.+++..+.+.+.++|++||+...+.
T Consensus 331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~ 401 (430)
T 1w1w_A 331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFE 401 (430)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHT
T ss_pred cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHH
Confidence 4469999999999999999 589999999999999999999999999988656789999999965543
No 97
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.87 E-value=7.6e-22 Score=193.56 Aligned_cols=146 Identities=23% Similarity=0.200 Sum_probs=99.6
Q ss_pred CcEEEEeEEEEe-----CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHH--------HCCCCCCccEEEEcCEeCC
Q 027067 9 PRLLLKNVSCMR-----NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRML--------AGFSKPSAGEILWNGHDIT 75 (229)
Q Consensus 9 ~~l~l~~l~~~~-----~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i--------~Gl~~p~~G~I~~~g~~~~ 75 (229)
..+.+++....+ +++.+++|++|++++|++++|+||||||||||||++ .|..-|.++.. +
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-~------ 702 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-V------ 702 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE-E------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc-c------
Confidence 357777665432 345789999999999999999999999999999999 55444433211 0
Q ss_pred CCchhhhhhhcceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHH--
Q 027067 76 QSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLL-- 153 (229)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral-- 153 (229)
+. -..+ +..+|+. +.....+|+|++++..+|+++
T Consensus 703 ------------~~---~d~i--------------------------~~~ig~~---d~l~~~lStf~~e~~~~a~il~~ 738 (934)
T 3thx_A 703 ------------SI---VDCI--------------------------LARVGAG---DSQLKGVSTFMAEMLETASILRS 738 (934)
T ss_dssp ------------EC---CSEE--------------------------EEECC------------CHHHHHHHHHHHHHHH
T ss_pred ------------hH---HHHH--------------------------HHhcCch---hhHHHhHhhhHHHHHHHHHHHHh
Confidence 00 0000 0111221 122346788888888888888
Q ss_pred hcCCCeEEEeCCCCCCCHHHHHHH-HHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067 154 AIDRPIWLLDEPSVALDYDGVRLL-EYIIAEHRK-KGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 154 ~~~p~illlDEPt~~LD~~~~~~l-~~~l~~~~~-~g~tii~vtH~~~~~~~~~~ 206 (229)
+.+|+++||||||+|+|+.....+ ..+++.+.+ .|.++|++||+.+.. ..++
T Consensus 739 a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-~lad 792 (934)
T 3thx_A 739 ATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT-ALAN 792 (934)
T ss_dssp CCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-GGGG
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-HHhc
Confidence 999999999999999999877665 777777765 489999999996554 4443
No 98
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.86 E-value=2.1e-24 Score=176.01 Aligned_cols=176 Identities=18% Similarity=0.153 Sum_probs=97.0
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCC-----CCCccEEEEcC-------EeCCCC
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS-----KPSAGEILWNG-------HDITQS 77 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~-----~p~~G~I~~~g-------~~~~~~ 77 (229)
+|+++|+++.|+ .+++++ |.+.+|..++|+|+||||||||++.|+|.. .|+.|.+.+.+ ..+...
T Consensus 3 ~l~~~~~~~~~~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt 79 (210)
T 1pui_A 3 NLNYQQTHFVMS-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDL 79 (210)
T ss_dssp --------CEEE-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEEC
T ss_pred chhhhhhhheee-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEEC
Confidence 589999999997 467887 899999999999999999999999999998 78888775422 111000
Q ss_pred -ch---------hhhhhhcceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChh-hcCCCCCCChhHHHH
Q 027067 78 -GI---------FHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRL-AKEKARMLSMGQRKR 146 (229)
Q Consensus 78 -~~---------~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGqkqR 146 (229)
+. ...++..++++.+.......+.+..++... .........+++...++... ...++..+|+||+||
T Consensus 80 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~ 157 (210)
T 1pui_A 80 PGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHP--LKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKA 157 (210)
T ss_dssp CCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSC--CCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHH
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCC--CchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHH
Confidence 00 000000000000000000000000000000 00000112344555666543 356678899999999
Q ss_pred -HHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcE
Q 027067 147 -LQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGI 190 (229)
Q Consensus 147 -v~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~t 190 (229)
+..+++++.+|+++++|||||++|..+.+.+.+.+.++..++.|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 158 QLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp HHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 89999999999999999999999999999999888887655543
No 99
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.86 E-value=2.1e-24 Score=203.95 Aligned_cols=168 Identities=12% Similarity=0.084 Sum_probs=104.5
Q ss_pred CcEEEEeEEEEeCC--eeeeeee----------eEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC-CccEEEEcCEeCC
Q 027067 9 PRLLLKNVSCMRNA--QQILRHV----------NISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP-SAGEILWNGHDIT 75 (229)
Q Consensus 9 ~~l~l~~l~~~~~~--~~iL~~v----------sl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-~~G~I~~~g~~~~ 75 (229)
+.++++||++.|+. +++|+.+ +++++. +||+|||||||||||++|+|+..| ++|.|+++|.++.
T Consensus 9 ~~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 9 GSVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 46899999999975 3455544 366654 999999999999999999999988 7999999998853
Q ss_pred CC--chhhhhhhcceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHH
Q 027067 76 QS--GIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLL 153 (229)
Q Consensus 76 ~~--~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral 153 (229)
.. .....++..++|++|+..+++..+|.+|+.+...... .. ...+| ++++.++.+.
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~-------------~~------~~~~s---~~~i~l~i~~ 143 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIA-------------GE------GMGIS---HELITLEISS 143 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHH-------------CS------SSCCC---SCCEEEEEEE
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhc-------------CC------ccccc---hHHHHHHhcC
Confidence 11 1112345678999999999999999999876532110 00 00111 1223333344
Q ss_pred hcCCCeEEEeCC------CCCCCHHHHHHHHHHHHHHHh--CCcEEEEEeCChhhH
Q 027067 154 AIDRPIWLLDEP------SVALDYDGVRLLEYIIAEHRK--KGGIVIVATHLPIQI 201 (229)
Q Consensus 154 ~~~p~illlDEP------t~~LD~~~~~~l~~~l~~~~~--~g~tii~vtH~~~~~ 201 (229)
...|+++|+||| |++||+..++.+.+++..+.+ .+.+++++||+.+..
T Consensus 144 ~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a 199 (608)
T 3szr_A 144 RDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA 199 (608)
T ss_dssp SSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT
T ss_pred CCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc
Confidence 558999999999 999999999999999998633 367899999997643
No 100
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.85 E-value=1.8e-22 Score=197.40 Aligned_cols=146 Identities=25% Similarity=0.230 Sum_probs=102.5
Q ss_pred HHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCCh
Q 027067 51 TFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGR 130 (229)
Q Consensus 51 TLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~ 130 (229)
|...|..+.++|..|+|+++|+++...... .....+.|+.+ . .++..+......... ...+..+.+..+|+..
T Consensus 383 ~C~~C~g~rl~~~~~~V~i~G~~i~~~~~~-~v~~~l~~~~~-~----~l~~~~~~~~~~~~~-~~~~~~~~L~~vgL~~ 455 (916)
T 3pih_A 383 TCSVCGGRRLNREALSVKINGLNIHEFTEL-SISEELEFLKN-L----NLTEREREIVGELLK-EIEKRLEFLVDVGLEY 455 (916)
T ss_dssp ECTTTCSCCBCTTGGGEEETTEEHHHHHHS-BHHHHHHHHHS-C----CCCTTTTTTHHHHHH-HHHHHHHHHHTTTCTT
T ss_pred cchhcccccCChHhcCcEECCccHHHhhhC-CHHHHHHHHHh-c----cCcHHHHHHHHhhHH-HHHHHHHHHHHcCCcc
Confidence 344666777899999999999987431100 00111111110 0 111111111000000 0112345678899975
Q ss_pred h-hcCCCCCCChhHHHHHHHHHHHhcCCC--eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067 131 L-AKEKARMLSMGQRKRLQLARLLAIDRP--IWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 131 ~-~~~~~~~LSgGqkqRv~lAral~~~p~--illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~ 203 (229)
. .++++.+|||||||||+|||||+.+|+ +|||||||+|||+...+.+.+++++++++|.|||+||||++.+..
T Consensus 456 l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~~ 531 (916)
T 3pih_A 456 LTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIRN 531 (916)
T ss_dssp CBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHHT
T ss_pred ccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh
Confidence 5 689999999999999999999999887 999999999999999999999999998889999999999988765
No 101
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.85 E-value=2e-21 Score=152.54 Aligned_cols=74 Identities=34% Similarity=0.367 Sum_probs=66.5
Q ss_pred hcCCCCCCChhHHHHHHHH------HHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhh
Q 027067 132 AKEKARMLSMGQRKRLQLA------RLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAM 205 (229)
Q Consensus 132 ~~~~~~~LSgGqkqRv~lA------ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~ 205 (229)
.++++.+||||||||++|| |||+.+|+++||||||++||+.+++.+.+.+..++++|.|||++||+. ++...+
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~~~~ 129 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-ELKDAA 129 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG-GGGGGC
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH-HHHHhC
Confidence 5788999999999999876 899999999999999999999999999999999877789999999998 455555
Q ss_pred c
Q 027067 206 N 206 (229)
Q Consensus 206 ~ 206 (229)
|
T Consensus 130 d 130 (148)
T 1f2t_B 130 D 130 (148)
T ss_dssp S
T ss_pred C
Confidence 4
No 102
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.85 E-value=9.3e-25 Score=179.13 Aligned_cols=143 Identities=12% Similarity=0.045 Sum_probs=110.0
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccC--CCCCHHHhHHHHH
Q 027067 33 IHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVK--EKFTVLDNVQWFE 110 (229)
Q Consensus 33 i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~tv~e~l~~~~ 110 (229)
.++|+++||+||||||||||+++|+|++.| .++++++++.++ ..+++.++..+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~ 59 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE-----------------------RVALLPMDHYYKDLGHLPLEERLRVNY 59 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG-----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC-----------------------CeEEEecCccccCcccccHHHhcCCCC
Confidence 578999999999999999999999998765 245666665554 4567777765421
Q ss_pred HhcC--ccccHHHHHHHhCCChhhcCCCCCCChhH----HHHHHHHHHHhcCCCeEEEeCCCCC-------CCHHHHHHH
Q 027067 111 VLEG--KQGNSLPALELMGLGRLAKEKARMLSMGQ----RKRLQLARLLAIDRPIWLLDEPSVA-------LDYDGVRLL 177 (229)
Q Consensus 111 ~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgGq----kqRv~lAral~~~p~illlDEPt~~-------LD~~~~~~l 177 (229)
.... ......+.++.+++.+..+.++.++|+|| +||+++|++++.+|+++++||||++ ||+.....+
T Consensus 60 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~ 139 (211)
T 3asz_A 60 DHPDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERF 139 (211)
T ss_dssp TSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHH
T ss_pred CChhhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHH
Confidence 1111 12335667888888777777899999997 4788999999999999999999999 999888777
Q ss_pred HHHHHHH-HhCCcEEEEEeCCh
Q 027067 178 EYIIAEH-RKKGGIVIVATHLP 198 (229)
Q Consensus 178 ~~~l~~~-~~~g~tii~vtH~~ 198 (229)
.+.+... +++|.|++.++|+.
T Consensus 140 ~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 140 IRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHH
Confidence 7777664 56689999999974
No 103
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.84 E-value=2.1e-22 Score=166.20 Aligned_cols=140 Identities=13% Similarity=0.103 Sum_probs=84.3
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHCCCCC-------CccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHH
Q 027067 32 SIHDGGALVLTGTNGSGKSTFLRMLAGFSKP-------SAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLD 104 (229)
Q Consensus 32 ~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-------~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e 104 (229)
.|++|++++|+||||||||||+++|+|+..+ ..|.+++++.+... ...+.++++...+++. ++.+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~-------~~~i~~~~~~~~~~~~-~~~~ 92 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR-------PERIREIAQNRGLDPD-EVLK 92 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC-------HHHHHHHHHHTTSCHH-HHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC-------HHHHHHHHHHcCCCHH-HHhh
Confidence 6899999999999999999999999996555 34477777654211 1122233333333222 4444
Q ss_pred hHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChh-HHHHHHHHHHHhc-------CCCeEEEeCCCCCCCHH----
Q 027067 105 NVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMG-QRKRLQLARLLAI-------DRPIWLLDEPSVALDYD---- 172 (229)
Q Consensus 105 ~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG-qkqRv~lAral~~-------~p~illlDEPt~~LD~~---- 172 (229)
|+.+. ...+.+ +++.+..+++++. +|+++++||||+++|+.
T Consensus 93 ~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~ 145 (231)
T 4a74_A 93 HIYVA---------------------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGR 145 (231)
T ss_dssp TEEEE---------------------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCST
T ss_pred cEEEE---------------------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCC
Confidence 43221 112222 2333444555444 99999999999999983
Q ss_pred ---H-----HHHHHHHHHHH-HhCCcEEEEEeCChhh----HHhhhc
Q 027067 173 ---G-----VRLLEYIIAEH-RKKGGIVIVATHLPIQ----IEDAMN 206 (229)
Q Consensus 173 ---~-----~~~l~~~l~~~-~~~g~tii~vtH~~~~----~~~~~~ 206 (229)
. ...+...+..+ ++.|.|||++||.... ++..+|
T Consensus 146 ~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d 192 (231)
T 4a74_A 146 GALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSAT 192 (231)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCS
T ss_pred cchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhce
Confidence 1 12455555554 4559999999996555 555443
No 104
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.83 E-value=2.2e-23 Score=170.01 Aligned_cols=147 Identities=14% Similarity=0.107 Sum_probs=99.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHHhcCc
Q 027067 36 GGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK 115 (229)
Q Consensus 36 Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~ 115 (229)
|++++|+||||||||||+++|+|+++ ++| |.++|.+.... ......++|++|+. ... .+++.. ....
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~---~~~~~~ig~~~~~~--~g~---~~~l~~---~~~~ 67 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEV---RQGGRRIGFDVVTL--SGT---RGPLSR---VGLE 67 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEE---ETTSSEEEEEEEET--TSC---EEEEEE---CCCC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchh---HhhhceEEEEEEec--ccc---eehhhc---cccc
Confidence 78999999999999999999999999 999 99999887432 23456788888754 111 122110 0000
Q ss_pred cccHHHHHHHhCCChhhcCCCCCCChhHHHHH-HHHH---HHhcCCCeEEEeC--CCCCCCHHHHHHHHHHHHHHHhCCc
Q 027067 116 QGNSLPALELMGLGRLAKEKARMLSMGQRKRL-QLAR---LLAIDRPIWLLDE--PSVALDYDGVRLLEYIIAEHRKKGG 189 (229)
Q Consensus 116 ~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv-~lAr---al~~~p~illlDE--Pt~~LD~~~~~~l~~~l~~~~~~g~ 189 (229)
.. .........++...+|+|||+++ ++++ |++.+|++||+|| |+..+|....+.+.+++. ...
T Consensus 68 ~~-------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~----~~~ 136 (189)
T 2i3b_A 68 PP-------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS----TPG 136 (189)
T ss_dssp CC-------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH----CSS
T ss_pred CC-------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh----CCC
Confidence 00 00001134556668999999988 4454 6899999999999 899999987777666664 233
Q ss_pred EEEE----EeCCh--hhHHhhhc
Q 027067 190 IVIV----ATHLP--IQIEDAMN 206 (229)
Q Consensus 190 tii~----vtH~~--~~~~~~~~ 206 (229)
++|+ +||+. .+++..++
T Consensus 137 ~~ilgti~vsh~~~~~~vd~i~~ 159 (189)
T 2i3b_A 137 TIILGTIPVPKGKPLALVEEIRN 159 (189)
T ss_dssp CCEEEECCCCCSSCCTTHHHHHT
T ss_pred cEEEEEeecCCCCchHHHHHHee
Confidence 4443 44985 66666654
No 105
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.83 E-value=1.1e-20 Score=161.72 Aligned_cols=154 Identities=13% Similarity=0.078 Sum_probs=101.8
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHH
Q 027067 32 SIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEV 111 (229)
Q Consensus 32 ~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~ 111 (229)
.+++|++++|+||||||||||++.+++... .|.++ .|.+... ...+.|+..+.... .+...+....
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~-------~~~v~~~~~e~~~~---~~~~r~~~~g- 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP-------TGPVIYLPAEDPPT---AIHHRLHALG- 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC-------CCCEEEEESSSCHH---HHHHHHHHHH-
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC-------CccEEEEECCCCHH---HHHHHHHHHH-
Confidence 478999999999999999999999998654 46653 3443211 12344554332110 1111111000
Q ss_pred hcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCC--CCCHHH---HHHHHHHHHHHH-
Q 027067 112 LEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSV--ALDYDG---VRLLEYIIAEHR- 185 (229)
Q Consensus 112 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~--~LD~~~---~~~l~~~l~~~~- 185 (229)
.........++++.+.+.+..++++..||+||+|++ ++++.+|+++++||||+ ++|... ...+...|..+.
T Consensus 92 ~~~~~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~ 168 (279)
T 1nlf_A 92 AHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAA 168 (279)
T ss_dssp TTSCHHHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHH
T ss_pred hhcChhhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHH
Confidence 001112234567788887778889999999998865 68888999999999999 999743 366667777764
Q ss_pred hCCcEEEEEeCChhhHH
Q 027067 186 KKGGIVIVATHLPIQIE 202 (229)
Q Consensus 186 ~~g~tii~vtH~~~~~~ 202 (229)
+.|.|||++||+.....
T Consensus 169 ~~g~tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 169 DTGCSIVFLHHASKGAA 185 (279)
T ss_dssp HHCCEEEEEEEC-----
T ss_pred HcCCEEEEEecCCCccc
Confidence 56999999999987654
No 106
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.82 E-value=4.9e-21 Score=185.58 Aligned_cols=151 Identities=17% Similarity=0.116 Sum_probs=99.4
Q ss_pred CcEEEEeEEEEe-----CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC-CccEEEEcCEeCCCCchhhh
Q 027067 9 PRLLLKNVSCMR-----NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP-SAGEILWNGHDITQSGIFHQ 82 (229)
Q Consensus 9 ~~l~l~~l~~~~-----~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-~~G~I~~~g~~~~~~~~~~~ 82 (229)
+.+.+++...-. +++.+++|+||+ ++|++++|+||||||||||||+|+|+..+ ..|. .+..
T Consensus 576 ~~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~vpa------ 642 (800)
T 1wb9_A 576 PGIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YVPA------ 642 (800)
T ss_dssp SCEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CBSS------
T ss_pred CCEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------ccch------
Confidence 357777654321 457799999999 99999999999999999999999997432 2221 1111
Q ss_pred hhhcceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067 83 YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLL 162 (229)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illl 162 (229)
....++++.+ ++..+++.|++.. ..+++|+++++ ++.+...+.+|+++||
T Consensus 643 ~~~~i~~~~~---i~~~~~~~d~l~~--------------------------~~stf~~e~~~-~~~il~~a~~psLlLL 692 (800)
T 1wb9_A 643 QKVEIGPIDR---IFTRVGAADDLAS--------------------------GRSTFMVEMTE-TANILHNATEYSLVLM 692 (800)
T ss_dssp SEEEECCCCE---EEEEEC-------------------------------------CHHHHHH-HHHHHHHCCTTEEEEE
T ss_pred hcccceeHHH---HHhhCCHHHHHHh--------------------------hhhhhhHHHHH-HHHHHHhccCCCEEEE
Confidence 0112333322 3444455554321 12356777765 4445556899999999
Q ss_pred eCCCCCCCHHHHHH-HHHHHHHHHh-CCcEEEEEeCChhhHH
Q 027067 163 DEPSVALDYDGVRL-LEYIIAEHRK-KGGIVIVATHLPIQIE 202 (229)
Q Consensus 163 DEPt~~LD~~~~~~-l~~~l~~~~~-~g~tii~vtH~~~~~~ 202 (229)
|||++|+|+..... ...+++.+.+ .|.++|++||+.+...
T Consensus 693 DEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~ 734 (800)
T 1wb9_A 693 DEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ 734 (800)
T ss_dssp ESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred ECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHH
Confidence 99999999876554 4778888877 4899999999987654
No 107
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.82 E-value=1e-21 Score=161.77 Aligned_cols=155 Identities=14% Similarity=0.130 Sum_probs=101.5
Q ss_pred CeeeeeeeeE-EEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCC
Q 027067 22 AQQILRHVNI-SIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKF 100 (229)
Q Consensus 22 ~~~iL~~vsl-~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (229)
+.+.|+++.. .+++|++++|+||||||||||++.|++...++.|.|.+.+.+...... ......+++.++..... .+
T Consensus 8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~ 85 (235)
T 2w0m_A 8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSI-IRQAKQFNWDFEEYIEK-KL 85 (235)
T ss_dssp SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHH-HHHHHHTTCCCGGGBTT-TE
T ss_pred CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHH-HHHHHHhcchHHHHhhC-CE
Confidence 3456788887 899999999999999999999999999888888888876544321111 11111222222111000 00
Q ss_pred CHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCC--eEEEeCCCCCC--CHHHHHH
Q 027067 101 TVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRP--IWLLDEPSVAL--DYDGVRL 176 (229)
Q Consensus 101 tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~--illlDEPt~~L--D~~~~~~ 176 (229)
.+.+. . ...++ ... .....|.++.++...+.+...+|+ ++++||||+.+ |+.....
T Consensus 86 ~~~~~---------~-------~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~ 145 (235)
T 2w0m_A 86 IIIDA---------L-------MKEKE-DQW---SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARK 145 (235)
T ss_dssp EEEEC---------C-------C-----CTT---BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHH
T ss_pred EEEec---------c-------ccccC-cee---eecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHH
Confidence 00000 0 00011 111 123449999999888888888999 99999999888 9887778
Q ss_pred HHHHHHHHH-hCCcEEEEEeCCh
Q 027067 177 LEYIIAEHR-KKGGIVIVATHLP 198 (229)
Q Consensus 177 l~~~l~~~~-~~g~tii~vtH~~ 198 (229)
+.+.+..+. +.|.|||++||+.
T Consensus 146 ~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 146 ISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp HHHHHHHHHHHTTEEEEEEEC--
T ss_pred HHHHHHHHHHhCCCeEEEEeccC
Confidence 888887764 5689999999998
No 108
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.82 E-value=2.5e-22 Score=181.92 Aligned_cols=167 Identities=14% Similarity=0.094 Sum_probs=98.9
Q ss_pred CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
..++.++||+++|+++.+++++||+| +|+|+||||||||+++|+|...++.| .+|..+.... ......+
T Consensus 9 ~~~l~~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~--t~~~~~i 77 (418)
T 2qag_C 9 EGYVGFANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK--TVQVEQS 77 (418)
T ss_dssp ------CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC-------CCEEEEE
T ss_pred cCcEEEEecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc--ceeeeeE
Confidence 35799999999999999999999998 99999999999999999999886555 1222221100 0112346
Q ss_pred eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCC---eEEEeC
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRP---IWLLDE 164 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~---illlDE 164 (229)
+++++...++..+|+.|++.+....... .....+.+. .+ ..++.+++||++|||+++.+|+ +|++||
T Consensus 78 ~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~-~~~~~i~~~------i~---~~~~~~l~qr~~IaRal~~d~~~~vlL~lde 147 (418)
T 2qag_C 78 KVLIKEGGVQLLLTIVDTPGFGDAVDNS-NCWQPVIDY------ID---SKFEDYLNAESRVNRRQMPDNRVQCCLYFIA 147 (418)
T ss_dssp ECC------CEEEEEEECC------------CHHHHHH------HH---HHHHHHTTTSCC-CCCCCCCC-CCEEEEECC
T ss_pred EEEEecCCcccceeeeechhhhhhccch-hhHHHHHHH------HH---HHHHHHHHHHHHHHHHhccCCCeeEEEEEec
Confidence 7777777777778899988765432110 001111111 11 1455677889999999999999 999999
Q ss_pred CC-CCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhh
Q 027067 165 PS-VALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQ 200 (229)
Q Consensus 165 Pt-~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~ 200 (229)
|| .+||+...+. ++.+.. +.+||+|.|-.+.
T Consensus 148 Pt~~~L~~~d~~~----lk~L~~-~v~iIlVinK~Dl 179 (418)
T 2qag_C 148 PSGHGLKPLDIEF----MKRLHE-KVNIIPLIAKADT 179 (418)
T ss_dssp C-CCSCCHHHHHH----HHHHTT-TSEEEEEEESTTS
T ss_pred CcccCCCHHHHHH----HHHHhc-cCcEEEEEEcccC
Confidence 99 6999887533 334443 6777777775443
No 109
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.82 E-value=7.8e-21 Score=185.52 Aligned_cols=106 Identities=26% Similarity=0.356 Sum_probs=88.7
Q ss_pred CCCCHHHhHHHHHHhcCcc-------------ccHHHHHHHhCCChh-hcCCCCCCChhHHHHHHHHHHHhcCC--CeEE
Q 027067 98 EKFTVLDNVQWFEVLEGKQ-------------GNSLPALELMGLGRL-AKEKARMLSMGQRKRLQLARLLAIDR--PIWL 161 (229)
Q Consensus 98 ~~~tv~e~l~~~~~~~~~~-------------~~~~~~l~~~~l~~~-~~~~~~~LSgGqkqRv~lAral~~~p--~ill 161 (229)
..+||.|++.|+..+.-.. .+..+.+..+||..+ +++.+.+|||||+|||+||++|+.+| ++||
T Consensus 450 ~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llI 529 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYV 529 (972)
T ss_dssp HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHHHHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEE
T ss_pred hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEE
Confidence 3468999988865442110 011245888999865 79999999999999999999999985 9999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067 162 LDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 162 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~ 203 (229)
|||||++||+...+.+.++|+.+++.|.|||+|+||++++..
T Consensus 530 LDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ 571 (972)
T 2r6f_A 530 LDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLA 571 (972)
T ss_dssp EECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHHS
T ss_pred EeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHh
Confidence 999999999999999999999999889999999999988753
No 110
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.81 E-value=5.9e-21 Score=185.35 Aligned_cols=157 Identities=22% Similarity=0.217 Sum_probs=107.3
Q ss_pred CCCccHHHHHHHHHCC---------CCCCccEEEEcCEeCCCCchhhhhhhcceEeec---ccccC----CCCCHHHhHH
Q 027067 44 TNGSGKSTFLRMLAGF---------SKPSAGEILWNGHDITQSGIFHQYKLQLNWLSL---KDAVK----EKFTVLDNVQ 107 (229)
Q Consensus 44 ~NGsGKSTLl~~i~Gl---------~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~~tv~e~l~ 107 (229)
.+..||+++.+.+... +.|.+|+|+++|+++...... .......++.+ .+... ..++. ++..
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~-~v~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 347 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRL-PLARVSELLRPYAEEREPGHAERVKNRP-EQAI 347 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHS-BHHHHHHHHHHHHTTCSSCSTTSSSSCS-SHHH
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhc-CHHHHHHHHHhhhhhhhhcccchhhcch-hhHH
Confidence 3557999999988774 345678999999887541100 00011111111 11000 00111 1111
Q ss_pred HHHHh-cCccccHHHHHHHhCCChh-hcCCCCCCChhHHHHHHHHHHHhcCC--CeEEEeCCCCCCCHHHHHHHHHHHHH
Q 027067 108 WFEVL-EGKQGNSLPALELMGLGRL-AKEKARMLSMGQRKRLQLARLLAIDR--PIWLLDEPSVALDYDGVRLLEYIIAE 183 (229)
Q Consensus 108 ~~~~~-~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGqkqRv~lAral~~~p--~illlDEPt~~LD~~~~~~l~~~l~~ 183 (229)
....+ .....+ .+.+..+|+... +++++.+|||||||||+||++|+.+| .+|||||||++||+...+.+.++++.
T Consensus 348 i~~~i~~ei~~r-l~~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~ 426 (842)
T 2vf7_A 348 ALQRMAADLVKR-LDVLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALEN 426 (842)
T ss_dssp HHHHHHHHHHHH-HHHHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHH
Confidence 11111 111122 236888999865 79999999999999999999999999 59999999999999999999999999
Q ss_pred HHhCCcEEEEEeCChhhHHh
Q 027067 184 HRKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 184 ~~~~g~tii~vtH~~~~~~~ 203 (229)
+++.|.|||+|+||++.+..
T Consensus 427 L~~~G~TVIvVeHdl~~l~~ 446 (842)
T 2vf7_A 427 LKRGGNSLFVVEHDLDVIRR 446 (842)
T ss_dssp HHTTTCEEEEECCCHHHHTT
T ss_pred HHHcCCEEEEEcCCHHHHHh
Confidence 99889999999999987653
No 111
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.81 E-value=2e-20 Score=166.21 Aligned_cols=135 Identities=19% Similarity=0.236 Sum_probs=88.9
Q ss_pred eEEEEe--CCeeeeeeeeE-------EEeCCcEEEEEcCCCccHHHHHHHHHCCCCCC-ccEEEEcCEeCCCCchhhhhh
Q 027067 15 NVSCMR--NAQQILRHVNI-------SIHDGGALVLTGTNGSGKSTFLRMLAGFSKPS-AGEILWNGHDITQSGIFHQYK 84 (229)
Q Consensus 15 ~l~~~~--~~~~iL~~vsl-------~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~-~G~I~~~g~~~~~~~~~~~~~ 84 (229)
++++++ ...+.|+++.+ .+.+|++++|+||||||||||+++|+|+++|+ .|.|...+.++... ..
T Consensus 93 ~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~-----~~ 167 (356)
T 3jvv_A 93 GAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFV-----HE 167 (356)
T ss_dssp EEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSC-----CC
T ss_pred EEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhh-----hh
Confidence 344444 22345566655 67889999999999999999999999999987 56665543333211 11
Q ss_pred hcceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeC
Q 027067 85 LQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDE 164 (229)
Q Consensus 85 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDE 164 (229)
...++++|........+..+ +||+||.++|++|++||
T Consensus 168 ~~~~~v~q~~~~~~~~~~~~-------------------------------------------~La~aL~~~PdvillDE 204 (356)
T 3jvv_A 168 SKKCLVNQREVHRDTLGFSE-------------------------------------------ALRSALREDPDIILVGE 204 (356)
T ss_dssp CSSSEEEEEEBTTTBSCHHH-------------------------------------------HHHHHTTSCCSEEEESC
T ss_pred ccccceeeeeeccccCCHHH-------------------------------------------HHHHHhhhCcCEEecCC
Confidence 12233433221111111100 99999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhh
Q 027067 165 PSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAM 205 (229)
Q Consensus 165 Pt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~ 205 (229)
|| |.+..+. +.++.+.|.+||+++|+.+.+ .++
T Consensus 205 p~---d~e~~~~----~~~~~~~G~~vl~t~H~~~~~-~~~ 237 (356)
T 3jvv_A 205 MR---DLETIRL----ALTAAETGHLVFGTLHTTSAA-KTI 237 (356)
T ss_dssp CC---SHHHHHH----HHHHHHTTCEEEEEESCSSHH-HHH
T ss_pred CC---CHHHHHH----HHHHHhcCCEEEEEEccChHH-HHH
Confidence 99 6555433 333456799999999998877 444
No 112
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.81 E-value=7.1e-21 Score=168.73 Aligned_cols=145 Identities=14% Similarity=0.093 Sum_probs=99.7
Q ss_pred eeeeee-eEEEeCCcEEEEEcCCCccHHHHHHHHHCCC--CCCc----cE-EEEcCEeCCCCchhhhhhhcceEeecccc
Q 027067 24 QILRHV-NISIHDGGALVLTGTNGSGKSTFLRMLAGFS--KPSA----GE-ILWNGHDITQSGIFHQYKLQLNWLSLKDA 95 (229)
Q Consensus 24 ~iL~~v-sl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~--~p~~----G~-I~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 95 (229)
+.|+.+ ++.|++|++++|+||||||||||++.+++.. +|++ |. |++++++.. ...+++++++...
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~-------~~~~i~~i~q~~~ 190 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF-------RPERIREIAQNRG 190 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC-------CHHHHHHHHHTTT
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC-------CHHHHHHHHHHcC
Confidence 345554 6799999999999999999999999999998 6776 67 889886542 1123445555544
Q ss_pred cCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHh-------cCCCeEEEeCCCCC
Q 027067 96 VKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLA-------IDRPIWLLDEPSVA 168 (229)
Q Consensus 96 ~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~-------~~p~illlDEPt~~ 168 (229)
+++. ++.+|+.+... .-|.+++|++.++++++ .+|+++|+||||++
T Consensus 191 ~~~~-~v~~ni~~~~~--------------------------~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ 243 (349)
T 1pzn_A 191 LDPD-EVLKHIYVARA--------------------------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 243 (349)
T ss_dssp CCHH-HHGGGEEEEEC--------------------------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred CCHH-HHhhCEEEEec--------------------------CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHh
Confidence 4332 45555432100 01467788888888887 68999999999999
Q ss_pred CCHHH------------HHHHHHHHHHH-HhCCcEEEEEeCChhhHH
Q 027067 169 LDYDG------------VRLLEYIIAEH-RKKGGIVIVATHLPIQIE 202 (229)
Q Consensus 169 LD~~~------------~~~l~~~l~~~-~~~g~tii~vtH~~~~~~ 202 (229)
+|+.. ...+...|..+ ++.|.|||+++|......
T Consensus 244 ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~ 290 (349)
T 1pzn_A 244 FRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPD 290 (349)
T ss_dssp HHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----
T ss_pred hhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccc
Confidence 99852 23444444554 345899999999876554
No 113
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.79 E-value=1.2e-21 Score=157.79 Aligned_cols=149 Identities=17% Similarity=0.082 Sum_probs=95.3
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHH
Q 027067 32 SIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEV 111 (229)
Q Consensus 32 ~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~ 111 (229)
.+++|++++|+||||||||||+++|+|. ++.|.|.++|.++.... .....++|+++... +..++.+|+.+...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~---~~~~~~~~~~~~~~--~~~~v~~~l~~~~~ 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYI---KHGRIDPWLPQSHQ--QNRMIMQIAADVAG 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTC---CSSCCCTTSSSHHH--HHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhh---hcccccCCccchhh--hhHHHHHHHHHHHH
Confidence 4789999999999999999999999998 78899999986542110 01112345544332 34578888765432
Q ss_pred hc---CccccHHHHHHHhCCChhh--cCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 027067 112 LE---GKQGNSLPALELMGLGRLA--KEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK 186 (229)
Q Consensus 112 ~~---~~~~~~~~~l~~~~l~~~~--~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~ 186 (229)
.. +.......++..+++..+. +.++..+|+|++||++++|++..+|+++ +|+...+.+.+.+..+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~ 149 (191)
T 1zp6_A 78 RYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLGA 149 (191)
T ss_dssp HHHHTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGG
T ss_pred HHhccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccCc
Confidence 11 1111111111122333333 4456789999999999999999999876 688777777776665543
Q ss_pred CCcEEEEEe
Q 027067 187 KGGIVIVAT 195 (229)
Q Consensus 187 ~g~tii~vt 195 (229)
.+..+|.++
T Consensus 150 ~~~~~i~t~ 158 (191)
T 1zp6_A 150 FEHHVLPVS 158 (191)
T ss_dssp GGGGEEECT
T ss_pred ccccEEECC
Confidence 333344443
No 114
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.78 E-value=1.6e-19 Score=176.82 Aligned_cols=83 Identities=31% Similarity=0.374 Sum_probs=76.6
Q ss_pred HHHHHhCCChh-hcCCCCCCChhHHHHHHHHHHHhcC--CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q 027067 121 PALELMGLGRL-AKEKARMLSMGQRKRLQLARLLAID--RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHL 197 (229)
Q Consensus 121 ~~l~~~~l~~~-~~~~~~~LSgGqkqRv~lAral~~~--p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~ 197 (229)
+.+..+||..+ +++.+.+|||||+|||+||++|+.+ |++|||||||++||+...+.+.++++.+++.|.|||+|+||
T Consensus 503 ~~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHd 582 (993)
T 2ygr_A 503 GFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHD 582 (993)
T ss_dssp HHHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCC
Confidence 45788899765 7999999999999999999999999 59999999999999999999999999999999999999999
Q ss_pred hhhHHh
Q 027067 198 PIQIED 203 (229)
Q Consensus 198 ~~~~~~ 203 (229)
++++..
T Consensus 583 l~~i~~ 588 (993)
T 2ygr_A 583 EDTIEH 588 (993)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 988753
No 115
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.78 E-value=9.9e-21 Score=157.63 Aligned_cols=131 Identities=11% Similarity=0.180 Sum_probs=90.0
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC--CccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCH----HH
Q 027067 31 ISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP--SAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTV----LD 104 (229)
Q Consensus 31 l~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv----~e 104 (229)
-..++|++++|+||||||||||+++|+|+++| .+|.|.+.+++... ..+.+++|++|.+..++.+++ .|
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~-----~e~~gi~y~fq~~~~f~~~~~~~~f~E 85 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP-----GEVHGEHYFFVNHDEFKEMISRDAFLE 85 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT-----TCCBTTTBEECCHHHHHHHHHTTCEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc-----ccccCceEEECCHHHHHHHHhcCHHHH
Confidence 36789999999999999999999999999986 68999888765432 123467888887655444443 22
Q ss_pred hHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 027067 105 NVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEH 184 (229)
Q Consensus 105 ~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~ 184 (229)
|+.+... +.|-.+++ +..++..++++||| ||+.+...+.+.+.
T Consensus 86 ~~~~~~~---------------------------~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~-- 128 (219)
T 1s96_A 86 HAEVFGN---------------------------YYGTSREA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-- 128 (219)
T ss_dssp EEEETTE---------------------------EEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT--
T ss_pred HHHHHhc---------------------------cCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc--
Confidence 2211100 00101121 33444568999999 99999998888765
Q ss_pred HhCCcEEEEEeCChhhHHhhh
Q 027067 185 RKKGGIVIVATHLPIQIEDAM 205 (229)
Q Consensus 185 ~~~g~tii~vtH~~~~~~~~~ 205 (229)
++.||+++||++++++.-+
T Consensus 129 --~~~tI~i~th~~~~l~~Rl 147 (219)
T 1s96_A 129 --HARSIFILPPSKIELDRRL 147 (219)
T ss_dssp --TCEEEEEECSSHHHHHHHH
T ss_pred --CCEEEEEECCCHHHHHHHH
Confidence 5889999999999888743
No 116
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.77 E-value=3.7e-21 Score=174.22 Aligned_cols=175 Identities=15% Similarity=0.100 Sum_probs=113.2
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcE--EEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGA--LVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL 87 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~--~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 87 (229)
.+++++ ++.|++.+ |+++||++++|++ ++|+||||||||||+|+|+|+. ++|.++..... ......+
T Consensus 16 ~l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~-~~~~~~i 84 (427)
T 2qag_B 16 TVPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQP-GVQLQSN 84 (427)
T ss_dssp -CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCS-SCEEEEE
T ss_pred eEEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCc-cceEeeE
Confidence 477788 88998888 9999999999999 9999999999999999999984 23333321111 1123468
Q ss_pred eEeecccccCCCCCHHHhHHHHHHhcC----------ccccHHHHHHHh-CCC----hhhcCCC-----------CCCCh
Q 027067 88 NWLSLKDAVKEKFTVLDNVQWFEVLEG----------KQGNSLPALELM-GLG----RLAKEKA-----------RMLSM 141 (229)
Q Consensus 88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~----------~~~~~~~~l~~~-~l~----~~~~~~~-----------~~LSg 141 (229)
+|++|...+++.+|+.||+.++..... ......+.+... ++. ...+.++ ..|+-
T Consensus 85 ~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~ 164 (427)
T 2qag_B 85 TYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKS 164 (427)
T ss_dssp EEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CH
T ss_pred EEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCH
Confidence 899998888778899888765422110 001122334433 332 1112221 24555
Q ss_pred hHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCcEEEEEeCCh
Q 027067 142 GQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAE-HRKKGGIVIVATHLP 198 (229)
Q Consensus 142 GqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~-~~~~g~tii~vtH~~ 198 (229)
.. +.++++|..+++++++|||+..|.+.....+.+.+++ ++..|..|+.+|.+-
T Consensus 165 ~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d 219 (427)
T 2qag_B 165 LD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTDD 219 (427)
T ss_dssp HH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred HH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence 55 7999999999999999999999999888888887876 888899999999764
No 117
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.76 E-value=3.3e-22 Score=177.88 Aligned_cols=151 Identities=11% Similarity=0.070 Sum_probs=96.7
Q ss_pred eeeeeeEEEeC--CcEEEEEcCCCccHHHHHHHHHCCCCCCc----cEEEEc----CEeCCCCchhhhhhhcceEeeccc
Q 027067 25 ILRHVNISIHD--GGALVLTGTNGSGKSTFLRMLAGFSKPSA----GEILWN----GHDITQSGIFHQYKLQLNWLSLKD 94 (229)
Q Consensus 25 iL~~vsl~i~~--Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~----G~I~~~----g~~~~~~~~~~~~~~~~~~~~~~~ 94 (229)
+.+.|+++|.+ |+.++|+||||||||||+|+|+|+++|++ |+|+++ |.++ .... ..+ ..+++++|..
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~-~~~-~~I~~~~q~~ 233 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQY-SDY-PQMALGHQRY 233 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCT-TTH-HHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCCh-hHH-HHHHHHHHHH
Confidence 35679999999 99999999999999999999999999999 887764 2222 1110 111 2233333221
Q ss_pred ccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHh-cCCCeEEEeC---CC----
Q 027067 95 AVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLA-IDRPIWLLDE---PS---- 166 (229)
Q Consensus 95 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~-~~p~illlDE---Pt---- 166 (229)
..+ ..++.+|+.++ + .+..+..+..+|+|++|+..+++++. .+|++++||| |+
T Consensus 234 ~~~-~~t~~~nl~~~-----------------~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g 294 (365)
T 1lw7_A 234 IDY-AVRHSHKIAFI-----------------D-TDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDG 294 (365)
T ss_dssp HHH-HHHHCSSEEEE-----------------S-SCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----
T ss_pred HHH-HHhccCCEEEE-----------------e-CCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCC
Confidence 110 11222222110 0 11122233456677788888888874 6999999999 65
Q ss_pred --CCCCHHHHHHHHHHHHHHH-hCCcEEEEEeCC
Q 027067 167 --VALDYDGVRLLEYIIAEHR-KKGGIVIVATHL 197 (229)
Q Consensus 167 --~~LD~~~~~~l~~~l~~~~-~~g~tii~vtH~ 197 (229)
.++|+..+..+.+.+.++. +.+.+||+++|.
T Consensus 295 ~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~ 328 (365)
T 1lw7_A 295 LRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP 328 (365)
T ss_dssp ------CCSHHHHHHHHHHHHHGGGCCCEEEECS
T ss_pred CcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 5899999999999887764 448899999985
No 118
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.76 E-value=5.2e-22 Score=173.81 Aligned_cols=159 Identities=18% Similarity=0.118 Sum_probs=107.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHCCC--------CCCccEEEEcCEeCCCCch--------------hhhhhhcceEe---e
Q 027067 37 GALVLTGTNGSGKSTFLRMLAGFS--------KPSAGEILWNGHDITQSGI--------------FHQYKLQLNWL---S 91 (229)
Q Consensus 37 e~~~iiG~NGsGKSTLl~~i~Gl~--------~p~~G~I~~~g~~~~~~~~--------------~~~~~~~~~~~---~ 91 (229)
++++|+|+||||||||+|.|.|+. .|+.|+|.++|.++..... .......++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 689999999999999999999997 7899999999998754310 11233445555 4
Q ss_pred cccccCCCCCHHHhHHHHH--H----h-cCcc----ccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeE
Q 027067 92 LKDAVKEKFTVLDNVQWFE--V----L-EGKQ----GNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIW 160 (229)
Q Consensus 92 ~~~~~~~~~tv~e~l~~~~--~----~-~~~~----~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~il 160 (229)
|...+++..++.|+..+.. . + .... .....++..+++.++.++.. ++|+||+||+..+++++.+|+++
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~-~ls~g~~Q~~~ad~ill~k~dl~ 163 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN-QFTIAQSQVGYADRILLTKTDVA 163 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH-HCHHHHHHHHTCSEEEEECTTTC
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh-hchHHHHHHHhCCEEEEECcccC
Confidence 5555555667777654321 0 0 0000 00011222334444433333 79999999999999999999987
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhccC
Q 027067 161 LLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNLR 208 (229)
Q Consensus 161 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~~ 208 (229)
||| +.+.+.++.++ .+.+|+++||+..+++..++..
T Consensus 164 --de~---------~~l~~~l~~l~-~~~~ii~~sh~~~~~~~l~~~~ 199 (318)
T 1nij_A 164 --GEA---------EKLHERLARIN-ARAPVYTVTHGDIDLGLLFNTN 199 (318)
T ss_dssp --SCT---------HHHHHHHHHHC-SSSCEEECCSSCCCGGGGSCCC
T ss_pred --CHH---------HHHHHHHHHhC-CCCeEEEecccCCCHHHHhCCC
Confidence 998 56667777764 5789999999877777766543
No 119
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.76 E-value=2.7e-21 Score=162.70 Aligned_cols=139 Identities=19% Similarity=0.128 Sum_probs=95.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHH---CCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHH
Q 027067 35 DGGALVLTGTNGSGKSTFLRMLA---GFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEV 111 (229)
Q Consensus 35 ~Ge~~~iiG~NGsGKSTLl~~i~---Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~ 111 (229)
++++++|+||||||||||+++|+ |+..|+.|+|.++|.+... .....+.+++++..+++..++.+++.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~ 100 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAST-----EVGEMAKQYIEKSLLVPDHVITRLMMSELE 100 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTC-----HHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCC-----hHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999999 9999999999887654321 111223334455556666788888765321
Q ss_pred --------hcCccccHH--HHHH---HhC------------CChhhcCCCCCCChhHHHHHHHHHHH-hcCCCeEEEe--
Q 027067 112 --------LEGKQGNSL--PALE---LMG------------LGRLAKEKARMLSMGQRKRLQLARLL-AIDRPIWLLD-- 163 (229)
Q Consensus 112 --------~~~~~~~~~--~~l~---~~~------------l~~~~~~~~~~LSgGqkqRv~lAral-~~~p~illlD-- 163 (229)
..+...... +.+. .++ +....++++.+||| |+ +|+ +.+|+++++|
T Consensus 101 ~~~~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~ 173 (246)
T 2bbw_A 101 NRRGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDV 173 (246)
T ss_dssp TCTTSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTT
T ss_pred hcCCCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccccc
Confidence 111111111 1221 122 23345778899999 66 777 9999999999
Q ss_pred --CCCCCCCHHHHHHHHHHHHHHH
Q 027067 164 --EPSVALDYDGVRLLEYIIAEHR 185 (229)
Q Consensus 164 --EPt~~LD~~~~~~l~~~l~~~~ 185 (229)
|||++||..+.+.+.+.+..+.
T Consensus 174 ~~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 174 TGEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp TCCBCBCCGGGSHHHHHHHHHHHH
T ss_pred cccccccCCCCcHHHHHHHHHHHH
Confidence 9999999988777777766653
No 120
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.74 E-value=3.6e-19 Score=156.59 Aligned_cols=148 Identities=16% Similarity=0.131 Sum_probs=102.3
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhh---hh--hcceEeecccccCCCCCHHHhHH
Q 027067 33 IHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQ---YK--LQLNWLSLKDAVKEKFTVLDNVQ 107 (229)
Q Consensus 33 i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~tv~e~l~ 107 (229)
.++|++++|+||||||||||+++|+|+++|++|+|.+.|.++.......+ +. .++.+++|...+++..++++|+.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999865443221 22 34558888888888889999987
Q ss_pred HHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-h
Q 027067 108 WFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHR-K 186 (229)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~-~ 186 (229)
+........ -.++..|+.+.....+.+|| .+++++..++.++++|.++. . .+.+.++.+. +
T Consensus 206 ~~~~~~~d~----vliDtaG~~~~~~~l~~eL~-------~i~ral~~de~llvLDa~t~-~------~~~~~~~~~~~~ 267 (328)
T 3e70_C 206 HAKARGIDV----VLIDTAGRSETNRNLMDEMK-------KIARVTKPNLVIFVGDALAG-N------AIVEQARQFNEA 267 (328)
T ss_dssp HHHHHTCSE----EEEEECCSCCTTTCHHHHHH-------HHHHHHCCSEEEEEEEGGGT-T------HHHHHHHHHHHH
T ss_pred HHHhccchh----hHHhhccchhHHHHHHHHHH-------HHHHHhcCCCCEEEEecHHH-H------HHHHHHHHHHHh
Confidence 654221110 01122333322233333333 48999999988999996654 2 3333444554 4
Q ss_pred CCcEEEEEeCCh
Q 027067 187 KGGIVIVATHLP 198 (229)
Q Consensus 187 ~g~tii~vtH~~ 198 (229)
.+.|+|++||.-
T Consensus 268 ~~it~iilTKlD 279 (328)
T 3e70_C 268 VKIDGIILTKLD 279 (328)
T ss_dssp SCCCEEEEECGG
T ss_pred cCCCEEEEeCcC
Confidence 588999999953
No 121
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.73 E-value=7.6e-21 Score=150.75 Aligned_cols=88 Identities=9% Similarity=0.026 Sum_probs=73.0
Q ss_pred EEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeec
Q 027067 13 LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSL 92 (229)
Q Consensus 13 l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~ 92 (229)
.+++++.|+++.+++++||++++|++++|+||||||||||+|+|+|++ |++|+|.++|.++.... . . . .+++|
T Consensus 10 ~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~--~-~-~--~~~~q 82 (158)
T 1htw_A 10 DEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEY--N-I-A--GKMIY 82 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEE--E-E-T--TEEEE
T ss_pred CHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeec--c-C-C--Cccee
Confidence 345567788888999999999999999999999999999999999999 99999999998764211 1 1 1 26788
Q ss_pred ccccCCCCCHHHhHHH
Q 027067 93 KDAVKEKFTVLDNVQW 108 (229)
Q Consensus 93 ~~~~~~~~tv~e~l~~ 108 (229)
+..++ .+|+.||+.+
T Consensus 83 ~~~l~-~ltv~e~l~~ 97 (158)
T 1htw_A 83 HFDLY-RLADPEELEF 97 (158)
T ss_dssp EEECT-TCSCTTHHHH
T ss_pred ccccc-cCCcHHHHHH
Confidence 88888 8999999854
No 122
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.73 E-value=1.7e-21 Score=171.96 Aligned_cols=172 Identities=14% Similarity=0.096 Sum_probs=117.6
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCch---hhhhhhc
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI---FHQYKLQ 86 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~---~~~~~~~ 86 (229)
+++++++++.|+++.+|+++||++.+|++++|+|+||||||||+++|+|++.|++|+|.+.|.++..... ....+..
T Consensus 29 ~ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~ 108 (337)
T 2qm8_A 29 LAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTR 108 (337)
T ss_dssp HHTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGG
T ss_pred HHeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhh
Confidence 4778888888988889999999999999999999999999999999999999999999999988743210 0123456
Q ss_pred ceEeecccccCCCCC------------HHHhHHHHH-------------------Hh----------cC-c-cccHH---
Q 027067 87 LNWLSLKDAVKEKFT------------VLDNVQWFE-------------------VL----------EG-K-QGNSL--- 120 (229)
Q Consensus 87 ~~~~~~~~~~~~~~t------------v~e~l~~~~-------------------~~----------~~-~-~~~~~--- 120 (229)
+++++|++.++...+ +.|.+.... .. .. . .....
T Consensus 109 i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~ 188 (337)
T 2qm8_A 109 MARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIK 188 (337)
T ss_dssp STTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CC
T ss_pred heeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHH
Confidence 778888776654311 122211000 00 00 0 00000
Q ss_pred -HHHHHhCCC--hhhcC-CCCCCChhHHHHHHHHHHHhc------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 027067 121 -PALELMGLG--RLAKE-KARMLSMGQRKRLQLARLLAI------DRPIWLLDEPSVALDYDGVRLLEYIIAEHR 185 (229)
Q Consensus 121 -~~l~~~~l~--~~~~~-~~~~LSgGqkqRv~lAral~~------~p~illlDEPt~~LD~~~~~~l~~~l~~~~ 185 (229)
...+...+- ...|. ....+|+|++|++..|++++. +|+++. +|++|..+.+.+.+.+.++.
T Consensus 189 ~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 189 KGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp TTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred HHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 011111111 12232 235689999999999999987 688876 99999999888888887754
No 123
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.72 E-value=1.8e-18 Score=154.44 Aligned_cols=123 Identities=19% Similarity=0.260 Sum_probs=89.0
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCC-ccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHH
Q 027067 25 ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPS-AGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVL 103 (229)
Q Consensus 25 iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~-~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~ 103 (229)
+|++++ +++|++++|+||||||||||+++|+|+++|+ +|+|.+.+.++.. ..+..+++++|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~-----~~~~~~~~v~Q~~--------- 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEY-----VFKHKKSIVNQRE--------- 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCS-----CCCCSSSEEEEEE---------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhh-----hhccCceEEEeee---------
Confidence 455554 7899999999999999999999999999997 8999776655431 1233456666531
Q ss_pred HhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 027067 104 DNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAE 183 (229)
Q Consensus 104 e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~ 183 (229)
+|+. +..+ +.+|+++|..+|+++++|||+ |++... ..++.
T Consensus 191 ----------------------~g~~------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~---~~l~~ 230 (372)
T 2ewv_A 191 ----------------------VGED------TKSF------ADALRAALREDPDVIFVGEMR---DLETVE---TALRA 230 (372)
T ss_dssp ----------------------BTTT------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHH---HHHHH
T ss_pred ----------------------cCCC------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHH---HHHHH
Confidence 1211 2233 469999999999999999999 765533 34444
Q ss_pred HHhCCcEEEEEeCChhhHHhhh
Q 027067 184 HRKKGGIVIVATHLPIQIEDAM 205 (229)
Q Consensus 184 ~~~~g~tii~vtH~~~~~~~~~ 205 (229)
. ..|.+|+.++|+.+ +.+++
T Consensus 231 ~-~~g~~vi~t~H~~~-~~~~~ 250 (372)
T 2ewv_A 231 A-ETGHLVFGTLHTNT-AIDTI 250 (372)
T ss_dssp H-TTTCEEEECCCCCS-HHHHH
T ss_pred H-hcCCEEEEEECcch-HHHHH
Confidence 3 46889999999855 44444
No 124
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.71 E-value=1.8e-19 Score=165.43 Aligned_cols=157 Identities=13% Similarity=0.096 Sum_probs=106.0
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCch---hhh--hhhcceEeecccccCCCC
Q 027067 26 LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI---FHQ--YKLQLNWLSLKDAVKEKF 100 (229)
Q Consensus 26 L~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~ 100 (229)
-+++||++.+|++++|+|+||||||||+++|+|++++++|+|.+.|.+...... ... .+.+++|++|...+++..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 468999999999999999999999999999999999999999998877654211 111 246789999988777788
Q ss_pred CHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHh-cCC-CeEEEeCCCCCCCHHHHHHHH
Q 027067 101 TVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLA-IDR-PIWLLDEPSVALDYDGVRLLE 178 (229)
Q Consensus 101 tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~-~~p-~illlDEPt~~LD~~~~~~l~ 178 (229)
++++|+.+.... +.. .-+++..|........+.+ .+|++.+++++. ..| ++||...|++|.|...
T Consensus 363 tV~e~l~~a~~~-~~D---vVLIDTaGrl~~~~~lm~E----L~kiv~iar~l~~~~P~evLLvLDattGq~al~----- 429 (503)
T 2yhs_A 363 VIFDAIQAAKAR-NID---VLIADTAGRLQNKSHLMEE----LKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVS----- 429 (503)
T ss_dssp HHHHHHHHHHHT-TCS---EEEECCCCSCCCHHHHHHH----HHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHH-----
T ss_pred HHHHHHHHHHhc-CCC---EEEEeCCCccchhhhHHHH----HHHHHHHHHHhccCCCCeeEEEecCcccHHHHH-----
Confidence 999999876431 110 0011222221111111112 247888888764 456 4566666888865442
Q ss_pred HHHHHHH-hCCcEEEEEeC
Q 027067 179 YIIAEHR-KKGGIVIVATH 196 (229)
Q Consensus 179 ~~l~~~~-~~g~tii~vtH 196 (229)
.++.++ .-+.|.|++||
T Consensus 430 -~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 430 -QAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp -HHHHHHHHTCCSEEEEEC
T ss_pred -HHHHHHhhcCCCEEEEEc
Confidence 233333 34789999999
No 125
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.70 E-value=3.8e-17 Score=133.66 Aligned_cols=138 Identities=13% Similarity=-0.010 Sum_probs=84.4
Q ss_pred eeeeeeE-EEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHH
Q 027067 25 ILRHVNI-SIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVL 103 (229)
Q Consensus 25 iL~~vsl-~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~ 103 (229)
.|+.+.. .+++|++++|+||||||||||++.+++ .+..+.++++...- ... .+ +.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~~--~~~-~~-------------------~~ 63 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEGG--FSP-ER-------------------LV 63 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSCC--CCH-HH-------------------HH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCCC--CCH-HH-------------------HH
Confidence 4455544 588999999999999999999999999 33334444443220 000 00 00
Q ss_pred HhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhH--HHHHHHHHHHhcC-CCeEEEeCCCCCCCHHH-------
Q 027067 104 DNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQ--RKRLQLARLLAID-RPIWLLDEPSVALDYDG------- 173 (229)
Q Consensus 104 e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq--kqRv~lAral~~~-p~illlDEPt~~LD~~~------- 173 (229)
+. ... ......++++.+ .+.++|+++ +|+++.+++++.+ |+++++||||+.+|...
T Consensus 64 ~~---~~~---~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~ 129 (220)
T 2cvh_A 64 QM---AET---RGLNPEEALSRF--------ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIA 129 (220)
T ss_dssp HH---HHT---TTCCHHHHHHHE--------EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHH
T ss_pred HH---HHh---cCCChHHHhhcE--------EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHH
Confidence 00 000 000111122211 233455554 5688888899986 99999999999999732
Q ss_pred -HHHHHHHHHHHH-hCCcEEEEEeCChhh
Q 027067 174 -VRLLEYIIAEHR-KKGGIVIVATHLPIQ 200 (229)
Q Consensus 174 -~~~l~~~l~~~~-~~g~tii~vtH~~~~ 200 (229)
...+.+.+..+. +.|.|||+++|....
T Consensus 130 ~~~~~~~~L~~l~~~~~~~vi~~~h~~~~ 158 (220)
T 2cvh_A 130 ELSRQLQVLLWIARKHNIPVIVINQVHFD 158 (220)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeeEEEc
Confidence 133444455553 448999999998653
No 126
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.70 E-value=1.7e-18 Score=154.04 Aligned_cols=141 Identities=17% Similarity=0.091 Sum_probs=98.0
Q ss_pred EEEeEEEE---eCC--eeee---------eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCC
Q 027067 12 LLKNVSCM---RNA--QQIL---------RHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQS 77 (229)
Q Consensus 12 ~l~~l~~~---~~~--~~iL---------~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~ 77 (229)
++++++++ |+. ..+| +++||.+++|++++|+||||||||||+++|+|+++|++|.|+++|.. ..
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~--e~ 214 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVP--EL 214 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSS--CC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCcc--cc
Confidence 55666666 642 3444 99999999999999999999999999999999999999999998742 11
Q ss_pred chhhhhhhcceEee-cccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcC
Q 027067 78 GIFHQYKLQLNWLS-LKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAID 156 (229)
Q Consensus 78 ~~~~~~~~~~~~~~-~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~ 156 (229)
.. ...+..+++++ |++.. .++++..++..|+.++..+
T Consensus 215 ~~-~~~~~~v~~v~~q~~~~-----------------------------------------~~~~~~t~~~~i~~~l~~~ 252 (361)
T 2gza_A 215 FL-PDHPNHVHLFYPSEAKE-----------------------------------------EENAPVTAATLLRSCLRMK 252 (361)
T ss_dssp CC-TTCSSEEEEECC---------------------------------------------------CCHHHHHHHHTTSC
T ss_pred Cc-cccCCEEEEeecCcccc-----------------------------------------ccccccCHHHHHHHHHhcC
Confidence 11 11233455554 22110 0134445888999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067 157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA 204 (229)
Q Consensus 157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~ 204 (229)
|+.+++|||.. ....+++..+.....|++.++|..+ ...+
T Consensus 253 pd~~l~~e~r~-------~~~~~~l~~l~~g~~~~l~t~H~~~-~~~~ 292 (361)
T 2gza_A 253 PTRILLAELRG-------GEAYDFINVAASGHGGSITSCHAGS-CELT 292 (361)
T ss_dssp CSEEEESCCCS-------THHHHHHHHHHTTCCSCEEEEECSS-HHHH
T ss_pred CCEEEEcCchH-------HHHHHHHHHHhcCCCeEEEEECCCC-HHHH
Confidence 99999999986 2344566666443457899999854 4443
No 127
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.70 E-value=1.3e-20 Score=170.70 Aligned_cols=146 Identities=23% Similarity=0.132 Sum_probs=103.5
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCc--h-hhhhhhc
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG--I-FHQYKLQ 86 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~--~-~~~~~~~ 86 (229)
.++++++++.|+...+|+++ + ..+|++++|+|||||||||||++|+|+++|++|+|.+.+.++.... . ..+....
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~ 220 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPR 220 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGG
T ss_pred CCCHHHcCCCHHHHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccc
Confidence 35667777777666788888 5 3899999999999999999999999999999999999887764210 0 0011223
Q ss_pred ceEe---------ecccccC--CC----CCHHHhHHHHHHh-------c-CccccHHHHHHHhCCChhhcCCCCCCChhH
Q 027067 87 LNWL---------SLKDAVK--EK----FTVLDNVQWFEVL-------E-GKQGNSLPALELMGLGRLAKEKARMLSMGQ 143 (229)
Q Consensus 87 ~~~~---------~~~~~~~--~~----~tv~e~l~~~~~~-------~-~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq 143 (229)
+++. .|++.+. .. .|+.+++.+...- . .........+..+++.... .+.+|||||
T Consensus 221 ~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~--~~~~LSgg~ 298 (418)
T 1p9r_A 221 VDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL--ISSSLLGVL 298 (418)
T ss_dssp GTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH--HHHHEEEEE
T ss_pred cCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH--HHHHHHHHH
Confidence 3333 3665542 32 4778887654311 0 1112344567788887654 678999999
Q ss_pred HHHHHHHHHHhcCCCeEE
Q 027067 144 RKRLQLARLLAIDRPIWL 161 (229)
Q Consensus 144 kqRv~lAral~~~p~ill 161 (229)
+|| |||+|+.+|++..
T Consensus 299 ~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 299 AQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp EEE--EEEEECTTTCEEE
T ss_pred HHH--hhhhhcCCCCccC
Confidence 999 9999999999876
No 128
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.70 E-value=3.9e-17 Score=131.23 Aligned_cols=69 Identities=28% Similarity=0.358 Sum_probs=60.7
Q ss_pred hcCCCCCCChhHHHHHHHHHHHhc----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhH
Q 027067 132 AKEKARMLSMGQRKRLQLARLLAI----DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQI 201 (229)
Q Consensus 132 ~~~~~~~LSgGqkqRv~lAral~~----~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~ 201 (229)
..+++..||||||||++||++|+. +|+++||||||++||+.++..+.++++++.+ +.++|++||+...+
T Consensus 58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~~~~ 130 (173)
T 3kta_B 58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRDVMM 130 (173)
T ss_dssp SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCHHHH
T ss_pred cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecHHHH
Confidence 456788999999999999999974 4699999999999999999999999998864 46899999997654
No 129
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.69 E-value=3.5e-18 Score=151.72 Aligned_cols=139 Identities=15% Similarity=0.124 Sum_probs=91.9
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC-CCccEEEEc-CEeCCCCchhhhhhhcceEeecccccCCCCCH
Q 027067 25 ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK-PSAGEILWN-GHDITQSGIFHQYKLQLNWLSLKDAVKEKFTV 102 (229)
Q Consensus 25 iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~-p~~G~I~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv 102 (229)
-++++++. .+|++++|+||||||||||+|+|+|+.. |++|+|.++ |+.... .....+++++|...+++..++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~t-----t~~~~i~~v~q~~~l~dtpgv 278 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHT-----TTAARLYHFPHGGDVIDSPGV 278 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC------------------CCCEEEECTTSCEEEECHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccc-----eEEEEEEEECCCCEecCcccH
Confidence 35666664 4799999999999999999999999999 999999987 654321 123457888888777777778
Q ss_pred HHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 027067 103 LDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIA 182 (229)
Q Consensus 103 ~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~ 182 (229)
.++..+............++++.+++.++.+..+.+|| ||+||++||+++ +++...+....++.
T Consensus 279 ~e~~l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl---------------i~~~R~~~y~~l~~ 342 (358)
T 2rcn_A 279 REFGLWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA---------------IAETRFENYHRILE 342 (358)
T ss_dssp HTCCCCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS---------------SCHHHHHHHHHHHH
T ss_pred HHhhhcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC---------------CCHHHHHHHHHHHH
Confidence 77421100000001223467788899999999999999 999999999874 34444445555666
Q ss_pred HHH
Q 027067 183 EHR 185 (229)
Q Consensus 183 ~~~ 185 (229)
++.
T Consensus 343 e~~ 345 (358)
T 2rcn_A 343 SMA 345 (358)
T ss_dssp HHC
T ss_pred HHH
Confidence 553
No 130
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.69 E-value=1.2e-17 Score=133.51 Aligned_cols=111 Identities=18% Similarity=0.186 Sum_probs=76.4
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHH
Q 027067 30 NISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWF 109 (229)
Q Consensus 30 sl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~ 109 (229)
+|++.+|+.++|+||||||||||++++++.+.|++|... .| +++.+.+...
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~-------------------~~----------~~~~~~~~~~ 82 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG-------------------YF----------FDTKDLIFRL 82 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC-------------------CE----------EEHHHHHHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE-------------------EE----------EEHHHHHHHH
Confidence 466788999999999999999999999998876655210 01 1222222111
Q ss_pred HHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhCC
Q 027067 110 EVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSV-ALDYDGVRLLEYIIAEHRKKG 188 (229)
Q Consensus 110 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~-~LD~~~~~~l~~~l~~~~~~g 188 (229)
.. ....-... -+...+.+|++|++|||++ ++|+..++.+.+++....++|
T Consensus 83 ~~----------~~~~~~~~-------------------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~ 133 (180)
T 3ec2_A 83 KH----------LMDEGKDT-------------------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNL 133 (180)
T ss_dssp HH----------HHHHTCCS-------------------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTT
T ss_pred HH----------HhcCchHH-------------------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcC
Confidence 10 00000000 0111233899999999995 999999999999999887789
Q ss_pred cEEEEEeCCh
Q 027067 189 GIVIVATHLP 198 (229)
Q Consensus 189 ~tii~vtH~~ 198 (229)
+++|++||..
T Consensus 134 ~~ii~tsn~~ 143 (180)
T 3ec2_A 134 KSTIITTNYS 143 (180)
T ss_dssp CEEEEECCCC
T ss_pred CCEEEEcCCC
Confidence 9999999975
No 131
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.68 E-value=6.2e-21 Score=153.84 Aligned_cols=155 Identities=15% Similarity=0.080 Sum_probs=97.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHHhcCc
Q 027067 36 GGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK 115 (229)
Q Consensus 36 Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~ 115 (229)
|++++|+||||||||||+++|++ +.+|.++++|.++... ...+++++.....+..++++++.+.......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 71 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM-------VVGGYRPPWESDELLALTWKNITDLTVNFLL 71 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT-------CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh-------hccccccCccchhHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999997 6789999988654221 1234444443333344677776553321100
Q ss_pred cccHHHHHHHhCCChhhcCCCCCC--ChhHHHHHHHHH------HHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 027067 116 QGNSLPALELMGLGRLAKEKARML--SMGQRKRLQLAR------LLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK 187 (229)
Q Consensus 116 ~~~~~~~l~~~~l~~~~~~~~~~L--SgGqkqRv~lAr------al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~ 187 (229)
... ..+++.+. .....+....+ |+||+|++.++. +++.+|+...+|+ ++|+..... ++.+..+.+.
T Consensus 72 ~~~-~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~ 145 (189)
T 2bdt_A 72 AQN-DVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGID 145 (189)
T ss_dssp TTC-EEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCC
T ss_pred cCC-cEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCC
Confidence 000 00001010 11111112234 889998988888 8889998888884 899987767 7777777666
Q ss_pred CcEEEEEeCC-hhhHHhhhc
Q 027067 188 GGIVIVATHL-PIQIEDAMN 206 (229)
Q Consensus 188 g~tii~vtH~-~~~~~~~~~ 206 (229)
+.++|.+||. +++++++++
T Consensus 146 ~~~ii~tsh~~~~~~e~~~~ 165 (189)
T 2bdt_A 146 ERYFYNTSHLQPTNLNDIVK 165 (189)
T ss_dssp TTSEEECSSSCGGGHHHHHH
T ss_pred ccEEEeCCCCChhhHHHHHH
Confidence 7899999998 888887764
No 132
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.66 E-value=5.8e-17 Score=126.94 Aligned_cols=92 Identities=22% Similarity=0.314 Sum_probs=71.9
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCcc--EEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCH
Q 027067 25 ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAG--EILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTV 102 (229)
Q Consensus 25 iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G--~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv 102 (229)
+|+++ +|+.++|+||||||||||+++++|...+ +| .+++++.++.. .
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~----------------------~--- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPL----------------------T--- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCC----------------------C---
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhH----------------------H---
Confidence 55666 8999999999999999999999999876 46 55554322110 0
Q ss_pred HHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 027067 103 LDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIA 182 (229)
Q Consensus 103 ~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~ 182 (229)
+++.+|++|++|||++ ++...++.+.++++
T Consensus 79 -------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~li~ 108 (149)
T 2kjq_A 79 -------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFSIFN 108 (149)
T ss_dssp -------------------------------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHHHHH
T ss_pred -------------------------------------------------HHHhCCCEEEEeCccc-cChHHHHHHHHHHH
Confidence 2356899999999998 66666888999999
Q ss_pred HHHhCCcE-EEEEeCC
Q 027067 183 EHRKKGGI-VIVATHL 197 (229)
Q Consensus 183 ~~~~~g~t-ii~vtH~ 197 (229)
...++|++ +|++||.
T Consensus 109 ~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 109 RFRNSGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHTCCEEEEEESS
T ss_pred HHHHcCCcEEEEECCC
Confidence 98888888 8888884
No 133
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.66 E-value=2.9e-16 Score=130.28 Aligned_cols=137 Identities=15% Similarity=0.197 Sum_probs=74.5
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHC--CCCC-----CccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHH
Q 027067 32 SIHDGGALVLTGTNGSGKSTFLRMLAG--FSKP-----SAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLD 104 (229)
Q Consensus 32 ~i~~Ge~~~iiG~NGsGKSTLl~~i~G--l~~p-----~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e 104 (229)
-+++|++++|+||||||||||++.|++ +.+| ..|.+++++.+........+....+++.++. +.+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~--------~~~ 91 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD--------VLD 91 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH--------HHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH--------Hhh
Confidence 478999999999999999999999999 5655 5788888876521111011122222322110 111
Q ss_pred hHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHH-HHHHHHHh--cCCCeEEEeCCCCCCCHH-------H-
Q 027067 105 NVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKR-LQLARLLA--IDRPIWLLDEPSVALDYD-------G- 173 (229)
Q Consensus 105 ~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqR-v~lAral~--~~p~illlDEPt~~LD~~-------~- 173 (229)
|+.+ ....+..+... +.-+..++ .+|+++++|||++.+|.. .
T Consensus 92 ~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~ 144 (243)
T 1n0w_A 92 NVAY---------------------------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSA 144 (243)
T ss_dssp TEEE---------------------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHH
T ss_pred CeEE---------------------------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHH
Confidence 1100 01123333221 22222222 589999999999999975 2
Q ss_pred ----HHHHHHHHHHH-HhCCcEEEEEeCChhhHHh
Q 027067 174 ----VRLLEYIIAEH-RKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 174 ----~~~l~~~l~~~-~~~g~tii~vtH~~~~~~~ 203 (229)
...+...+..+ ++.|.|||+++|.....+.
T Consensus 145 r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~ 179 (243)
T 1n0w_A 145 RQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDG 179 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCEEEEEC--------
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCC
Confidence 22333334443 3459999999998766554
No 134
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.66 E-value=3.8e-19 Score=142.72 Aligned_cols=140 Identities=16% Similarity=0.104 Sum_probs=81.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHCCCCCC---ccEEEEcCEeCCCCch--hhhhh-hcce----EeecccccCCCCCHHHhH
Q 027067 37 GALVLTGTNGSGKSTFLRMLAGFSKPS---AGEILWNGHDITQSGI--FHQYK-LQLN----WLSLKDAVKEKFTVLDNV 106 (229)
Q Consensus 37 e~~~iiG~NGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~~--~~~~~-~~~~----~~~~~~~~~~~~tv~e~l 106 (229)
++++|+|+||||||||+++|+|+++|+ .|.|.++|.++..... ...++ ..++ +++|+..++ +.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~~- 77 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRRV- 77 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEEC-
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----EecC-
Confidence 689999999999999999999999998 8999999988543220 12233 3456 666665443 1110
Q ss_pred HHHHHhcCccccHHHHHHH-h-CCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeE-------EEeCCCCC---CCHHHH
Q 027067 107 QWFEVLEGKQGNSLPALEL-M-GLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIW-------LLDEPSVA---LDYDGV 174 (229)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~~-~-~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~il-------llDEPt~~---LD~~~~ 174 (229)
.... .....+++.. + +++...-. .|||||+||++||||++.+|++. .-|.|..+ +|....
T Consensus 78 --~~~~---~a~l~~~i~~~l~g~dt~i~E---glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~ 149 (171)
T 2f1r_A 78 --SEEE---GNDLDWIYERYLSDYDLVITE---GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEV 149 (171)
T ss_dssp --CHHH---HTCHHHHHHHHTTTCSEEEEE---SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCH
T ss_pred --Chhh---hhCHHHHHHhhCCCCCEEEEC---CcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccH
Confidence 0000 1123344443 3 44332222 39999999999999999999873 23555322 233344
Q ss_pred HHHHHHHHHHHhCCc
Q 027067 175 RLLEYIIAEHRKKGG 189 (229)
Q Consensus 175 ~~l~~~l~~~~~~g~ 189 (229)
+.+.+++.+...+|.
T Consensus 150 ~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 150 ERIAEFILSLLREGG 164 (171)
T ss_dssp HHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHhccC
Confidence 566666655444443
No 135
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.65 E-value=6.3e-18 Score=152.96 Aligned_cols=156 Identities=12% Similarity=0.054 Sum_probs=94.1
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC-----------CCccEEEEcCEeCCCCchhhhhhhcceEeeccc
Q 027067 26 LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK-----------PSAGEILWNGHDITQSGIFHQYKLQLNWLSLKD 94 (229)
Q Consensus 26 L~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~-----------p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~ 94 (229)
-++++|+++.|++++|+|+|||||||||++|+|..+ |+.|.|.+++. .. ..+.+.+
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~------------~~-~~l~Dtp 213 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEE------------ER-FTLADIP 213 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSS------------CE-EEEEECC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCc------------ce-EEEEecc
Confidence 479999999999999999999999999999999842 33333333220 00 0111222
Q ss_pred ccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHH
Q 027067 95 AVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGV 174 (229)
Q Consensus 95 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~ 174 (229)
.+... ..++..+.........++..++..+++. ++++.+||+||+|++.+|++|+..|.++++ +.+|....
T Consensus 214 Gli~~--a~~~~~L~~~fl~~~era~~lL~vvDls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~ 284 (416)
T 1udx_A 214 GIIEG--ASEGKGLGLEFLRHIARTRVLLYVLDAA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE 284 (416)
T ss_dssp CCCCC--GGGSCCSCHHHHHHHTSSSEEEEEEETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH
T ss_pred ccccc--hhhhhhhhHHHHHHHHHHHhhhEEeCCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH
Confidence 22111 1111000000000001111223333443 566788999999999999999999999999 99998755
Q ss_pred HHHHHHHHHHHhCCcEEEEEe-CChhhHHh
Q 027067 175 RLLEYIIAEHRKKGGIVIVAT-HLPIQIED 203 (229)
Q Consensus 175 ~~l~~~l~~~~~~g~tii~vt-H~~~~~~~ 203 (229)
+.+..+...+++.+.+++++| |.-.-+++
T Consensus 285 ~~~~~l~~~l~~~g~~vi~iSA~~g~gi~e 314 (416)
T 1udx_A 285 EAVKALADALAREGLAVLPVSALTGAGLPA 314 (416)
T ss_dssp HHHHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred HHHHHHHHHHHhcCCeEEEEECCCccCHHH
Confidence 555555555555576766655 44333433
No 136
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.64 E-value=5.7e-20 Score=170.38 Aligned_cols=169 Identities=14% Similarity=0.093 Sum_probs=113.8
Q ss_pred eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe------------
Q 027067 23 QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL------------ 90 (229)
Q Consensus 23 ~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~------------ 90 (229)
..+++++++.+++|++++|+||||||||||+++|+|+++|++|.|++.|.+-..... ...+.+.
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~----~~~v~~~~r~~~~~~~~~~ 322 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH----ENWIAEVTRTGMGEGEIDM 322 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC----SSEEEEECBCCSSSCCBCH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC----CCeEEEEeecccccCCcCH
Confidence 357889999999999999999999999999999999999999999998864111100 0011111
Q ss_pred --------eccc--ccCCCCCHHHhHHHHHHhc-Cc-------cccHHHHHHHhCCCh-----h----hc---CCCCCCC
Q 027067 91 --------SLKD--AVKEKFTVLDNVQWFEVLE-GK-------QGNSLPALELMGLGR-----L----AK---EKARMLS 140 (229)
Q Consensus 91 --------~~~~--~~~~~~tv~e~l~~~~~~~-~~-------~~~~~~~l~~~~l~~-----~----~~---~~~~~LS 140 (229)
.|+| .++..++..|++.++.... +. ...+.+++.++.... . .+ .....+|
T Consensus 323 ~~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s 402 (511)
T 2oap_1 323 YDLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVR 402 (511)
T ss_dssp HHHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEES
T ss_pred HHHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEe
Confidence 1111 2334556666655443332 21 234566666654321 1 11 2334689
Q ss_pred hhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEE--EeCChhhHHhhhcc
Q 027067 141 MGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIV--ATHLPIQIEDAMNL 207 (229)
Q Consensus 141 gGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~--vtH~~~~~~~~~~~ 207 (229)
+||+||+++|. + | |+|||+.....+.+.+..+...+.|+++ +||++++++..+..
T Consensus 403 ~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g~ 459 (511)
T 2oap_1 403 GNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLGV 459 (511)
T ss_dssp SSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHTS
T ss_pred CCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcCC
Confidence 99999987752 1 7 9999998776666666666666888875 99999999887753
No 137
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.62 E-value=3.2e-17 Score=142.43 Aligned_cols=116 Identities=16% Similarity=0.086 Sum_probs=84.9
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEE---cCEeCCCCchhhhhh-hcceEeecccccC-----CCCCH
Q 027067 32 SIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW---NGHDITQSGIFHQYK-LQLNWLSLKDAVK-----EKFTV 102 (229)
Q Consensus 32 ~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~---~g~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~tv 102 (229)
++.+|++++|+||||||||||+|+|+ +.+|++|+|.+ +|++++.... ... ..++|++|.+.+. +.+|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~--~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR--LIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE--EEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE--EEEcCCCcEEEECcCcCcCcccccCCH
Confidence 44579999999999999999999999 99999999999 8988765421 112 3689999988653 67888
Q ss_pred HHhH--HHHH------HhcC------ccccHHHHHHHhCCCh-hhcCCCCCCChhHHHHHHHHH
Q 027067 103 LDNV--QWFE------VLEG------KQGNSLPALELMGLGR-LAKEKARMLSMGQRKRLQLAR 151 (229)
Q Consensus 103 ~e~l--~~~~------~~~~------~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAr 151 (229)
||+ .|.. .+.. ....+.++++.++|.+ ..++++..|||.++|++.|||
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777 3321 1111 1234778999999986 788999999999999999986
No 138
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.60 E-value=1.1e-15 Score=133.84 Aligned_cols=140 Identities=19% Similarity=0.096 Sum_probs=75.5
Q ss_pred EEEEEcCCCccHHHHHHHHHC-CCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHHhcCcc
Q 027067 38 ALVLTGTNGSGKSTFLRMLAG-FSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQ 116 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~G-l~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~ 116 (229)
.+.|.||||+|||||+++++| ++.|+.|.+.++|.+..... .....++++++...+....+ +. . . ...
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~-~----~-~~~ 106 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTAS---NRKLELNVVSSPYHLEITPS--DM-G----N-NDR 106 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC---------------------CCEECSSEEEECCC------------CCH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccc---cccceeeeecccceEEecHh--hc-C----C-cch
Confidence 499999999999999999999 88999999999987654321 11334566665443211111 00 0 0 000
Q ss_pred ccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeC
Q 027067 117 GNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATH 196 (229)
Q Consensus 117 ~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH 196 (229)
....+.++.+......+... +||| +..+|+++|+|||++ ||..+...+.+.+.+.. .+.++|++||
T Consensus 107 ~~~~~~i~~~~~~~~~~~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~-~~~~~Il~t~ 172 (354)
T 1sxj_E 107 IVIQELLKEVAQMEQVDFQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCD 172 (354)
T ss_dssp HHHHHHHHHHTTTTC------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEES
T ss_pred HHHHHHHHHHHHhccccccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc-CCCEEEEEeC
Confidence 01223333322111111111 5666 778999999999999 99999999999888764 4689999999
Q ss_pred ChhhHH
Q 027067 197 LPIQIE 202 (229)
Q Consensus 197 ~~~~~~ 202 (229)
+++.+.
T Consensus 173 ~~~~l~ 178 (354)
T 1sxj_E 173 SMSPII 178 (354)
T ss_dssp CSCSSC
T ss_pred CHHHHH
Confidence 976543
No 139
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.59 E-value=3.1e-18 Score=149.11 Aligned_cols=139 Identities=17% Similarity=0.149 Sum_probs=98.6
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEE-------------------eCCcEEEEEcCCCccHHHHHHHHHCCCC--CCccEE
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISI-------------------HDGGALVLTGTNGSGKSTFLRMLAGFSK--PSAGEI 67 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i-------------------~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~--p~~G~I 67 (229)
.+|+++||++.| .++++++++.+ .+|+++||+||||||||||+++|+|++. |++|+|
T Consensus 36 ~~i~~~~v~~~y--~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i 113 (308)
T 1sq5_A 36 EDLSLEEVAEIY--LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRV 113 (308)
T ss_dssp TTCCHHHHHHTH--HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCE
T ss_pred cccchHhHHHHH--HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeE
Confidence 468899999989 47899999988 9999999999999999999999999988 999999
Q ss_pred EE---cCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHH
Q 027067 68 LW---NGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQR 144 (229)
Q Consensus 68 ~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqk 144 (229)
.+ +|..... ..+..++++ +...+++.+++.+++.+...+..... ....+....+.+
T Consensus 114 ~vi~~d~~~~~~-----~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~-------------~i~~P~~~~~~~-- 172 (308)
T 1sq5_A 114 ELITTDGFLHPN-----QVLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVP-------------NVTAPVYSHLIY-- 172 (308)
T ss_dssp EEEEGGGGBCCH-----HHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCS-------------CEEECCEETTTT--
T ss_pred EEEecCCccCcH-----HHHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCC-------------ceeccccccccc--
Confidence 99 8866421 123456777 66666677899998877654322110 011111222222
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCC
Q 027067 145 KRLQLARLLAIDRPIWLLDEPSVALD 170 (229)
Q Consensus 145 qRv~lAral~~~p~illlDEPt~~LD 170 (229)
+|+..+.+.+.+++++|+|.|....+
T Consensus 173 ~~~~~~~~~~~~~~ivIlEG~~l~~~ 198 (308)
T 1sq5_A 173 DVIPDGDKTVVQPDILILEGLNVLQS 198 (308)
T ss_dssp EECTTCCEEEC-CCEEEEECTTTTCC
T ss_pred CcccccceecCCCCEEEECchhhCCC
Confidence 33332234456789999999998877
No 140
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.56 E-value=5.6e-19 Score=151.53 Aligned_cols=133 Identities=11% Similarity=0.092 Sum_probs=93.0
Q ss_pred CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeeccc-ccCCC
Q 027067 21 NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKD-AVKEK 99 (229)
Q Consensus 21 ~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 99 (229)
+...+++++++++++| ++|+||||||||||+|+|+|...+ |.|.++|.++..... ......++++++.. ...+.
T Consensus 31 ~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~-~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 31 RNPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYV-GESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp HSHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTT-HHHHHHHHHHHHHHHHTCSE
T ss_pred hCHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhh-hHHHHHHHHHHHHHHhcCCC
Confidence 4556889999999999 999999999999999999999876 799999987754321 12233455555543 33444
Q ss_pred CCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCC
Q 027067 100 FTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSV 167 (229)
Q Consensus 100 ~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~ 167 (229)
+++.|++......+.. .. .-......++.+.+|||||+||+.+++|+.++|++| |||+.
T Consensus 106 i~~~Deid~~~~~r~~-~~------~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 106 VIFFDEVDALCPRRSD-RE------TGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp EEEEETCTTTCC----------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred eEeeehhhhhhcccCC-Cc------chHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 5566665432111100 00 001234556778899999999999999999999985 99975
No 141
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.56 E-value=1.4e-16 Score=138.21 Aligned_cols=109 Identities=14% Similarity=0.072 Sum_probs=74.4
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEE---cCEeCCCCchhhhhhhcceEeecccc------------
Q 027067 31 ISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW---NGHDITQSGIFHQYKLQLNWLSLKDA------------ 95 (229)
Q Consensus 31 l~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~---~g~~~~~~~~~~~~~~~~~~~~~~~~------------ 95 (229)
|++.+|++++|+||||||||||+|+|+|+.+|++|+|.+ +|++++...... ....+++++|.+.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~-~~~~~g~v~q~p~~~~~~~~~~~~~ 242 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLL-KFDFGGYVVDTPGFANLEINDIEPE 242 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEE-ECTTSCEEESSCSSTTCCCCSSCHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEE-EcCCCCEEEECcCCCccCCCcCCHH
Confidence 345679999999999999999999999999999999999 898876533111 1135788888764
Q ss_pred ----cCCCCCHHHhHHHHHHhc--CccccHHHHHHHhCCC-hhhcCCCCCCCh
Q 027067 96 ----VKEKFTVLDNVQWFEVLE--GKQGNSLPALELMGLG-RLAKEKARMLSM 141 (229)
Q Consensus 96 ----~~~~~tv~e~l~~~~~~~--~~~~~~~~~l~~~~l~-~~~~~~~~~LSg 141 (229)
+++.+|+ +|+.+..... ....++.++++.++|. +..+++++.||+
T Consensus 243 ~~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 243 ELKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp HHGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 5788888 9887742111 1234578899999995 778888988885
No 142
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.56 E-value=3.4e-15 Score=134.42 Aligned_cols=133 Identities=14% Similarity=0.088 Sum_probs=76.9
Q ss_pred EEeCCcEEEEEcCCCccHHHHHH--HHHCCCCCCcc-----EEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHH
Q 027067 32 SIHDGGALVLTGTNGSGKSTFLR--MLAGFSKPSAG-----EILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLD 104 (229)
Q Consensus 32 ~i~~Ge~~~iiG~NGsGKSTLl~--~i~Gl~~p~~G-----~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e 104 (229)
-|++|++++|+||||||||||++ ++.++.+++.| .+++++++........+....+++.++ ++.+
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~--------~vle 245 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD--------DALN 245 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH--------HHHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH--------hHhh
Confidence 58899999999999999999999 55687776544 788887653211111112223332211 2233
Q ss_pred hHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHH--HHHHHHHHH--hcCCCeEEEeCCCCCCCHHHH------
Q 027067 105 NVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQR--KRLQLARLL--AIDRPIWLLDEPSVALDYDGV------ 174 (229)
Q Consensus 105 ~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqk--qRv~lAral--~~~p~illlDEPt~~LD~~~~------ 174 (229)
|+.+. ....++. +.+.-+..+ ..+|+++++|||++.+|....
T Consensus 246 ni~~~----------------------------~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~ 297 (400)
T 3lda_A 246 NVAYA----------------------------RAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELS 297 (400)
T ss_dssp TEEEE----------------------------ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHH
T ss_pred cEEEe----------------------------ccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchH
Confidence 32111 0111222 222222222 257999999999999996422
Q ss_pred ------HHHHHHHHHHH-hCCcEEEEEeCChhh
Q 027067 175 ------RLLEYIIAEHR-KKGGIVIVATHLPIQ 200 (229)
Q Consensus 175 ------~~l~~~l~~~~-~~g~tii~vtH~~~~ 200 (229)
..+...|..+. +.|.|||+++|....
T Consensus 298 ~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~ 330 (400)
T 3lda_A 298 ARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQ 330 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCEEEEEEEC---
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEEEEeeccc
Confidence 34555666654 459999999998443
No 143
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.54 E-value=8.5e-15 Score=130.34 Aligned_cols=71 Identities=27% Similarity=0.266 Sum_probs=60.2
Q ss_pred CCCCCCChhHHHHH------HHHHHHhcC-CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067 134 EKARMLSMGQRKRL------QLARLLAID-RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 134 ~~~~~LSgGqkqRv------~lAral~~~-p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~ 206 (229)
+++..|||||+||+ ++|++++.+ |++|||||||++||+..+..+.+.+..+. .+.+||++||++. +...+|
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~-~~~~~d 353 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE-LEDVAD 353 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG-GGGGCS
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH-HHhhCC
Confidence 45679999999988 567899999 99999999999999999999999998864 3568999999975 455444
No 144
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.54 E-value=8.6e-19 Score=154.03 Aligned_cols=172 Identities=16% Similarity=0.171 Sum_probs=115.9
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCC-------cEEEEEcCCCccHHHHHHHHHCCC----CCCccEEEEcCEeCCCC
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDG-------GALVLTGTNGSGKSTFLRMLAGFS----KPSAGEILWNGHDITQS 77 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~G-------e~~~iiG~NGsGKSTLl~~i~Gl~----~p~~G~I~~~g~~~~~~ 77 (229)
.+++.++++..|++..+++++++.+++| +.++|+||||+|||||+++|+|.+ .+++|.+..++.++..
T Consensus 17 ~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~- 95 (334)
T 1in4_A 17 QFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAA- 95 (334)
T ss_dssp CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHH-
T ss_pred HHcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHH-
Confidence 3567778888888888999999999887 899999999999999999999998 6667776655443321
Q ss_pred chhhh-hhhcceEeecccccCCCCCHHHhHHHHHHhcCc---------cccHHHHHHHhCCChhhcCCCCCCChhHHHHH
Q 027067 78 GIFHQ-YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK---------QGNSLPALELMGLGRLAKEKARMLSMGQRKRL 147 (229)
Q Consensus 78 ~~~~~-~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~---------~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv 147 (229)
.... ....+.++.+.+.+.+ ++.|++......... ...+...+..+++.. ...++..||+|++||+
T Consensus 96 -~~~~~~~~~v~~iDE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~~~Ls~~l~sR~ 171 (334)
T 1in4_A 96 -ILTSLERGDVLFIDEIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRSGLLSSPLRSRF 171 (334)
T ss_dssp -HHHHCCTTCEEEEETGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESCGGGSCHHHHTTC
T ss_pred -HHHHccCCCEEEEcchhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCCcccCCHHHHHhc
Confidence 0111 1345778887766654 677776432211110 011222333344433 5677889999999998
Q ss_pred HHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067 148 QLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 148 ~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~ 206 (229)
.++ .+||+...+.+.++++...+. + ++|+.+.+..+++
T Consensus 172 ~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~~~~~ia~ 210 (334)
T 1in4_A 172 GII----------------LELDFYTVKELKEIIKRAASLMD-----VEIEDAAAEMIAK 210 (334)
T ss_dssp SEE----------------EECCCCCHHHHHHHHHHHHHHTT-----CCBCHHHHHHHHH
T ss_pred Cce----------------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCHHHHHHHHH
Confidence 655 778887788888888776432 3 3688777766654
No 145
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.51 E-value=2.9e-16 Score=135.76 Aligned_cols=121 Identities=12% Similarity=0.025 Sum_probs=80.8
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHH--
Q 027067 34 HDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEV-- 111 (229)
Q Consensus 34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~-- 111 (229)
.++.+++|+|++|||||||.+.|++++.+. | . . ...+.+++++..+++. +..+|+.+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~---------~-~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~ 90 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G---------G-EKSIGYASIDDFYLTH-EDQLKLNEQFKNN 90 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G---------G-GSCEEEEEGGGGBCCH-HHHHHHHHHTTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C---------C-CceEEEeccccccCCh-HHHHHHhcccccc
Confidence 468899999999999999999999998763 2 0 0 1123344777665543 67777765321
Q ss_pred --hc--Cc-----cccHHHHHHHhCCC--------hhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q 027067 112 --LE--GK-----QGNSLPALELMGLG--------RLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYD 172 (229)
Q Consensus 112 --~~--~~-----~~~~~~~l~~~~l~--------~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~ 172 (229)
.. +. .....+.++.+.-. -....+...+||||+||+.+|++.+.+|+|+|+||||+++|+.
T Consensus 91 ~l~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 91 KLLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp GGGSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred chhhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence 10 00 11233445554332 1134566799999999999984333399999999999999985
No 146
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.49 E-value=1.5e-14 Score=125.23 Aligned_cols=142 Identities=18% Similarity=0.127 Sum_probs=97.4
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067 11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL 90 (229)
Q Consensus 11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~ 90 (229)
+.++++++.|+... ++++|+ +|++++++|+||+||||+++.|+|.+.+..|+|.+.+.++......
T Consensus 77 ~~~~~l~~~~~~~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~---------- 142 (295)
T 1ls1_A 77 TVYEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR---------- 142 (295)
T ss_dssp HHHHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHH----------
T ss_pred HHHHHHHHHHCCCC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHH----------
Confidence 34556666776543 788888 9999999999999999999999999998899999988776431100
Q ss_pred ecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCC-CCCC
Q 027067 91 SLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEP-SVAL 169 (229)
Q Consensus 91 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEP-t~~L 169 (229)
+.+. .+.+..++.-.... ...+-.+.+|.+++++...+++++|+||| +.++
T Consensus 143 -------------~ql~-------------~~~~~~~l~~~~~~--~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~ 194 (295)
T 1ls1_A 143 -------------EQLR-------------LLGEKVGVPVLEVM--DGESPESIRRRVEEKARLEARDLILVDTAGRLQI 194 (295)
T ss_dssp -------------HHHH-------------HHHHHHTCCEEECC--TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSC
T ss_pred -------------HHHH-------------HhcccCCeEEEEcC--CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccc
Confidence 0000 01122344322100 01233345788999998899999999999 9999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEe
Q 027067 170 DYDGVRLLEYIIAEHRKKGGIVIVAT 195 (229)
Q Consensus 170 D~~~~~~l~~~l~~~~~~g~tii~vt 195 (229)
|......+..+..... ...+++++.
T Consensus 195 d~~~~~~l~~~~~~~~-~~~~~lv~~ 219 (295)
T 1ls1_A 195 DEPLMGELARLKEVLG-PDEVLLVLD 219 (295)
T ss_dssp CHHHHHHHHHHHHHHC-CSEEEEEEE
T ss_pred cHHHHHHHHHHhhhcC-CCEEEEEEe
Confidence 9887777777766553 344554443
No 147
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.49 E-value=3.3e-17 Score=133.77 Aligned_cols=152 Identities=17% Similarity=0.142 Sum_probs=78.1
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHCCCC-------------CCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCC
Q 027067 34 HDGGALVLTGTNGSGKSTFLRMLAGFSK-------------PSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKF 100 (229)
Q Consensus 34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~-------------p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (229)
++|++++|+||||||||||+++|+|+++ |..|+ ++|.++...+. ..++..+ .|... ....
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~-~~~~~~i---~~~~~-l~~~ 74 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTR-EMMQRDI---AAGDF-IEHA 74 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCH-HHHHHHH---HHTCE-EEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccH-HHHHHHH---HcCCC-Eeee
Confidence 5799999999999999999999999875 66776 35654432221 1111111 11111 1112
Q ss_pred CHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHH----HHHHHH-HHhcCCCeEEEeCCCCCCCHHHHH
Q 027067 101 TVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRK----RLQLAR-LLAIDRPIWLLDEPSVALDYDGVR 175 (229)
Q Consensus 101 tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkq----Rv~lAr-al~~~p~illlDEPt~~LD~~~~~ 175 (229)
++.+|+ ++. ....+.++++.-... ..+.. + .|-++ ++ .|+ +++.+|++++|||||+++|..+.+
T Consensus 75 ~~~~n~-~g~----~~~~i~~~~~~~~~~-~~~~~---~-~g~~~~~~~~~-~~~~~~l~~p~~~ilde~~~~~d~~~e~ 143 (198)
T 1lvg_A 75 EFSGNL-YGT----SKEAVRAVQAMNRIC-VLDVD---L-QGVRSIKKTDL-CPIYIFVQPPSLDVLEQRLRLRNTETEE 143 (198)
T ss_dssp EETTEE-EEE----EHHHHHHHHHTTCEE-EEECC---H-HHHHHHTTSSC-CCEEEEEECSCHHHHHHHHHHHTCSCHH
T ss_pred eecCcc-CCC----CHHHHHHHHHcCCcE-EEECC---H-HHHHHHHhcCC-CcEEEEEeCCCHHHHHHHHHhcCCCCHH
Confidence 233332 110 111222223211000 00000 0 01110 11 456 788899999999999999988777
Q ss_pred HHHHHHHHHHh--------CCcEEEEEeCChhhHHh
Q 027067 176 LLEYIIAEHRK--------KGGIVIVATHLPIQIED 203 (229)
Q Consensus 176 ~l~~~l~~~~~--------~g~tii~vtH~~~~~~~ 203 (229)
.+.+.+....+ ...-.|++.++++....
T Consensus 144 ~i~~~l~~~~~~~~~a~~~~~~D~iivnd~le~a~~ 179 (198)
T 1lvg_A 144 SLAKRLAAARTDMESSKEPGLFDLVIINDDLDKAYA 179 (198)
T ss_dssp HHHHHHHHHHHHTTGGGSTTTCSEEEECSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCceEEEECCCHHHHHH
Confidence 77666655432 22335566666554433
No 148
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.48 E-value=1.6e-15 Score=132.03 Aligned_cols=113 Identities=15% Similarity=0.142 Sum_probs=69.7
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEE---cCEeCCCCchhhhhhhcceEeecccccCC----CCCHH
Q 027067 31 ISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW---NGHDITQSGIFHQYKLQLNWLSLKDAVKE----KFTVL 103 (229)
Q Consensus 31 l~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~tv~ 103 (229)
+++.+|++++|+||||||||||+|+|+|+.+|++|+|.+ +|+.++... ..+....++++|.+.+.. .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~--~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV--ELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC--CEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH--HHhhcCCEEEecCCCccccccccCCH-
Confidence 567799999999999999999999999999999999998 888776432 112223789999887765 5788
Q ss_pred HhHH--HHHH--h------cC------ccccHHHHHHHhCCChhhcCCCCCCChhHHHH
Q 027067 104 DNVQ--WFEV--L------EG------KQGNSLPALELMGLGRLAKEKARMLSMGQRKR 146 (229)
Q Consensus 104 e~l~--~~~~--~------~~------~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqR 146 (229)
|++. |... . .. ....+.++++.+++.+...+....|+.|++||
T Consensus 245 e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~~ 303 (307)
T 1t9h_A 245 EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDR 303 (307)
T ss_dssp HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhc
Confidence 8873 2211 1 11 12347789999999876666667777788773
No 149
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.47 E-value=1.9e-16 Score=129.77 Aligned_cols=114 Identities=18% Similarity=0.168 Sum_probs=69.4
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHCCCCC---CccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHH
Q 027067 33 IHDGGALVLTGTNGSGKSTFLRMLAGFSKP---SAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWF 109 (229)
Q Consensus 33 i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p---~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~ 109 (229)
.++|++++|+||||||||||+++|+|+++| +.|.|.++|..+.... ....+.... .... .+.+.-.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~-----~~~~~~~~~-~~~~---~~~~~~~-- 87 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRL-----LEPRGLLPR-KGAP---ETFDFEG-- 87 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHH-----HGGGTCGGG-TTSG---GGBCHHH--
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHH-----HHHhccccc-CCCC---chhhHHH--
Confidence 478999999999999999999999999985 5788888876553211 111111000 0000 0001000
Q ss_pred HHhcCccccHHHHHHHh--C--CChhhcCCCCCCChhHHHHHHHH-HHHhcCCCeEEEeCCC
Q 027067 110 EVLEGKQGNSLPALELM--G--LGRLAKEKARMLSMGQRKRLQLA-RLLAIDRPIWLLDEPS 166 (229)
Q Consensus 110 ~~~~~~~~~~~~~l~~~--~--l~~~~~~~~~~LSgGqkqRv~lA-ral~~~p~illlDEPt 166 (229)
..+.+..+ + +.-........+|+||+||+++| ++++.++.++++|||.
T Consensus 88 ---------~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 88 ---------FQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp ---------HHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred ---------HHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 01111111 1 11011223446799999999998 8889999888899984
No 150
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.47 E-value=1.9e-16 Score=142.21 Aligned_cols=155 Identities=8% Similarity=-0.008 Sum_probs=103.0
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHC------------CCCCCccEEEEcCEeCCCCchhhhhhhcc---eEeeccccc
Q 027067 32 SIHDGGALVLTGTNGSGKSTFLRMLAG------------FSKPSAGEILWNGHDITQSGIFHQYKLQL---NWLSLKDAV 96 (229)
Q Consensus 32 ~i~~Ge~~~iiG~NGsGKSTLl~~i~G------------l~~p~~G~I~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~ 96 (229)
.+.+|..++|+|+||||||||+|+|+| .+.|+.|.|.+.|..+..........+.+ ..+.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999 66799999999874331110000011111 245566667
Q ss_pred CCCCCHHHhH--HHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCC--CeEEEeCCCCCCCHH
Q 027067 97 KEKFTVLDNV--QWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDR--PIWLLDEPSVALDYD 172 (229)
Q Consensus 97 ~~~~tv~e~l--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p--~illlDEPt~~LD~~ 172 (229)
+...+..+++ .+...++... .++..++.. .+..+..+|++. +| +++++|||+.++|+.
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~d----~il~Vvd~~--~d~~i~~v~~~~------------dP~~di~ildeel~~~D~~ 157 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAVD----AIYQVVRAF--DDAEIIHVEGDV------------DPIRDLSIIVDELLIKDAE 157 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTCS----EEEEEEECC--CTTCSSCCSSSS------------CHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHH----HHHHHHhcc--ccceeeeecccc------------CcchhhhhchhhhHHHHHH
Confidence 7766665554 3333322211 011111111 144555677763 89 999999999999999
Q ss_pred HHHHHHHHHHHH-HhCCcEEEEEeCChhhHHhhhc
Q 027067 173 GVRLLEYIIAEH-RKKGGIVIVATHLPIQIEDAMN 206 (229)
Q Consensus 173 ~~~~l~~~l~~~-~~~g~tii~vtH~~~~~~~~~~ 206 (229)
..+..+..+... .+.|.|++ +|....+++.++
T Consensus 158 ~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~ 190 (392)
T 1ni3_A 158 FVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIE 190 (392)
T ss_dssp HHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHH
Confidence 998888888887 66677754 999888777653
No 151
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.46 E-value=3.3e-14 Score=123.78 Aligned_cols=99 Identities=16% Similarity=0.195 Sum_probs=76.1
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHH
Q 027067 28 HVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQ 107 (229)
Q Consensus 28 ~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~ 107 (229)
.++++..+|++++|+|+|||||||+++.|++.+.++.|+|.+.+.|..... ..+.+
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~-----------------------a~eqL- 151 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAA-----------------------AIEQL- 151 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHH-----------------------HHHHH-
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHH-----------------------HHHHH-
Confidence 356667889999999999999999999999999998899998876653210 01111
Q ss_pred HHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHH---HHHHHHhcCCCeEEEeCCCC
Q 027067 108 WFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRL---QLARLLAIDRPIWLLDEPSV 167 (229)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv---~lAral~~~p~illlDEPt~ 167 (229)
..+.+.+++.. +...|+|+.+++ ++++++..+|+++|+|||..
T Consensus 152 ------------~~~~~~~gl~~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 152 ------------KIWGERVGATV-----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp ------------HHHHHHHTCEE-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred ------------HHHHHHcCCcE-----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 12334455542 236789999999 99999999999999999975
No 152
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.44 E-value=1.1e-16 Score=133.04 Aligned_cols=40 Identities=25% Similarity=0.212 Sum_probs=23.3
Q ss_pred eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH-CCCCC
Q 027067 23 QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLA-GFSKP 62 (229)
Q Consensus 23 ~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~-Gl~~p 62 (229)
.+..+++||++++|++++|+||||||||||+++|+ |++++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 34678999999999999999999999999999999 99843
No 153
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.43 E-value=2.5e-14 Score=131.35 Aligned_cols=60 Identities=15% Similarity=0.152 Sum_probs=52.8
Q ss_pred EEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCC
Q 027067 13 LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDIT 75 (229)
Q Consensus 13 l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~ 75 (229)
+.+++. .+..+|+++||+|++ ++++|+|||||||||||++|+|+++|++|+|.++|+++.
T Consensus 9 l~~l~~--~~~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 9 FRSLTL--INWNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA 68 (483)
T ss_dssp EEEEEE--EEETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred eeEEEE--eccccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence 444443 335689999999999 999999999999999999999999999999999998765
No 154
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.35 E-value=9.8e-13 Score=113.90 Aligned_cols=127 Identities=13% Similarity=0.169 Sum_probs=80.3
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHCCCCCCcc-EEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHHh
Q 027067 34 HDGGALVLTGTNGSGKSTFLRMLAGFSKPSAG-EILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVL 112 (229)
Q Consensus 34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G-~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~ 112 (229)
.+|++++|+|+|||||||+++.|++.+.+++| +|.+-+.|.. ..++.+.+..+..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~-----------------------r~~a~eqL~~~~~- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY-----------------------RIAAVEQLKTYAE- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS-----------------------STTHHHHHHHHHT-
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc-----------------------cchHHHHHHHHHH-
Confidence 47999999999999999999999999988788 5655443321 1233444433211
Q ss_pred cCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH---hCCc
Q 027067 113 EGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHR---KKGG 189 (229)
Q Consensus 113 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~---~~g~ 189 (229)
..++.... ..+ +..-+.++++ +.+|+++|+| |+|+|+.....+.++...+. ..+.
T Consensus 159 ------------~~gl~~~~-----~~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~ 216 (296)
T 2px0_A 159 ------------LLQAPLEV-----CYT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQS 216 (296)
T ss_dssp ------------TTTCCCCB-----CSS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEE
T ss_pred ------------hcCCCeEe-----cCC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeE
Confidence 12222110 012 2334566664 4899999999 89999876655555444332 2233
Q ss_pred EEEE-EeCChhhHHhhhc
Q 027067 190 IVIV-ATHLPIQIEDAMN 206 (229)
Q Consensus 190 tii~-vtH~~~~~~~~~~ 206 (229)
++++ +||..+.+.++++
T Consensus 217 ~lVl~at~~~~~~~~~~~ 234 (296)
T 2px0_A 217 FLVLSATAKYEDMKHIVK 234 (296)
T ss_dssp EEEEETTBCHHHHHHHTT
T ss_pred EEEEECCCCHHHHHHHHH
Confidence 4444 4999888887654
No 155
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.33 E-value=4.4e-17 Score=139.18 Aligned_cols=138 Identities=15% Similarity=0.139 Sum_probs=90.3
Q ss_pred EEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeec
Q 027067 13 LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSL 92 (229)
Q Consensus 13 l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~ 92 (229)
++++.+.|++..+++++++++++| ++|+||||||||||+++|++... .|.|.+++.++..... ......+.++++
T Consensus 52 l~~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~-~~~~~~i~~~~~ 126 (278)
T 1iy2_A 52 LKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFV-GVGAARVRDLFE 126 (278)
T ss_dssp HHHHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTT-THHHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHh-hHHHHHHHHHHH
Confidence 344555566667899999999999 99999999999999999999885 7899998765432111 111223444444
Q ss_pred ccc-cCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCC
Q 027067 93 KDA-VKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPS 166 (229)
Q Consensus 93 ~~~-~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt 166 (229)
... ..+.+++.|++......... .....+. .++.+.+|||||+||+.+++|+..+|++ +|++.
T Consensus 127 ~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~---------~~~ll~~lsgg~~~~~~i~~a~t~~p~~--ld~~l 195 (278)
T 1iy2_A 127 TAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT---------LNQLLVEMDGFEKDTAIVVMAATNRPDI--LDPAL 195 (278)
T ss_dssp HHHTSCSEEEEEETHHHHHCC--------CHHHHHH---------HHHHHHHHTTCCTTCCEEEEEEESCTTS--SCHHH
T ss_pred HHHhcCCcEEehhhhHhhhcccccccCCcchHHHHH---------HHHHHHHHhCCCCCCCEEEEEecCCchh--CCHhH
Confidence 432 34455677777433211100 0011111 1223457899999999999999999987 67764
No 156
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.32 E-value=1.1e-12 Score=108.71 Aligned_cols=158 Identities=15% Similarity=0.128 Sum_probs=79.1
Q ss_pred eeeee-eEEEeCCcEEEEEcCCCccHHHHH-HHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCH
Q 027067 25 ILRHV-NISIHDGGALVLTGTNGSGKSTFL-RMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTV 102 (229)
Q Consensus 25 iL~~v-sl~i~~Ge~~~iiG~NGsGKSTLl-~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv 102 (229)
.|+.+ .--+++|++++|+||||||||||+ +++.+..+...+.+++..... .... .+....+++.++.......+++
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~-~~~~-~~~~~~~g~~~~~~~~~~~l~~ 88 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH-PVQV-RQNMAQFGWDVKPYEEKGMFAM 88 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC-HHHH-HHHHHTTTCCCHHHHHHTSEEE
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC-HHHH-HHHHHHcCCCHHHHhhCCcEEE
Confidence 34444 456899999999999999999995 455555554445555554321 1111 1111223322211100001111
Q ss_pred HHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHh--cCCCeEEEeCCCCCC--CHHH-HHHH
Q 027067 103 LDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLA--IDRPIWLLDEPSVAL--DYDG-VRLL 177 (229)
Q Consensus 103 ~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~--~~p~illlDEPt~~L--D~~~-~~~l 177 (229)
.+. ... .++.....+.....-+....+....++.++ .+|+++++|+|++.+ |+.. ++.+
T Consensus 89 ~~~---------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l 152 (247)
T 2dr3_A 89 VDA---------FTA-------GIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSII 152 (247)
T ss_dssp EEC---------STT-------TTCC--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHH
T ss_pred Eec---------chh-------hcccccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHH
Confidence 110 000 000000000011111122223333333333 589999999999988 5533 4455
Q ss_pred HHHHHHHHhCCcEEEEEeCChhh
Q 027067 178 EYIIAEHRKKGGIVIVATHLPIQ 200 (229)
Q Consensus 178 ~~~l~~~~~~g~tii~vtH~~~~ 200 (229)
..+.+.+++.|.|||+++|....
T Consensus 153 ~~l~~~~~~~~~~vi~~~h~~~~ 175 (247)
T 2dr3_A 153 LQLKRVLAGTGCTSIFVSQVSVG 175 (247)
T ss_dssp HHHHHHHHHTTCEEEEEEECC--
T ss_pred HHHHHHHHHCCCeEEEEecCCCC
Confidence 56655566779999999998664
No 157
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.31 E-value=6.1e-13 Score=107.00 Aligned_cols=36 Identities=22% Similarity=0.166 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 027067 146 RLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAE 183 (229)
Q Consensus 146 Rv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~ 183 (229)
.+.+|++++.+|+++++| ||++|..+.+.+.+.+.+
T Consensus 153 ~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 153 PTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 467899999999999999 999999988887776654
No 158
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.30 E-value=7.6e-17 Score=135.63 Aligned_cols=141 Identities=15% Similarity=0.127 Sum_probs=91.4
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067 11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL 90 (229)
Q Consensus 11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~ 90 (229)
.+++++.+.|++..+++++++++++| ++|+||||||||||+++|++... .|.|.+++.++..... ......+.++
T Consensus 26 ~~l~~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~-~~~~~~i~~~ 100 (254)
T 1ixz_A 26 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFV-GVGAARVRDL 100 (254)
T ss_dssp HHHHHHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCT-THHHHHHHHH
T ss_pred HHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHh-hHHHHHHHHH
Confidence 34455555666677899999999999 99999999999999999999875 7899998765432111 1112233444
Q ss_pred ecccc-cCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeC
Q 027067 91 SLKDA-VKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDE 164 (229)
Q Consensus 91 ~~~~~-~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDE 164 (229)
++... ..+.+.+.|++......... .....+. .++....|||||+||+.+++|+..+|++ +|+
T Consensus 101 ~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~---------~~~ll~~l~g~~~~~~~i~~a~t~~p~~--ld~ 169 (254)
T 1ixz_A 101 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT---------LNQLLVEMDGFEKDTAIVVMAATNRPDI--LDP 169 (254)
T ss_dssp HHHHTTSSSEEEEEETHHHHHC---------CHHHHHH---------HHHHHHHHHTCCTTCCEEEEEEESCGGG--SCG
T ss_pred HHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHH---------HHHHHHHHhCCCCCCCEEEEEccCCchh--CCH
Confidence 44322 33455667777432211100 0111111 1222357899999999999999999987 788
Q ss_pred CCC
Q 027067 165 PSV 167 (229)
Q Consensus 165 Pt~ 167 (229)
+.-
T Consensus 170 ~l~ 172 (254)
T 1ixz_A 170 ALL 172 (254)
T ss_dssp GGG
T ss_pred HHc
Confidence 764
No 159
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=99.29 E-value=4.6e-14 Score=117.89 Aligned_cols=76 Identities=18% Similarity=0.196 Sum_probs=50.5
Q ss_pred cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCch-------hhh
Q 027067 10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI-------FHQ 82 (229)
Q Consensus 10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~-------~~~ 82 (229)
.|+++|++..++. ++++.+ ++++|+|||||||||||++|+|++.|++|+|.++|.++..... ...
T Consensus 9 ~l~l~~~~~~~~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (227)
T 1qhl_A 9 SLTLINWNGFFAR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGK 80 (227)
T ss_dssp EEEEEEETTEEEE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGGG
T ss_pred EEEEEeeecccCC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhhH
Confidence 4888888765542 566777 8999999999999999999999999999999999988732211 111
Q ss_pred hhhcceEeecc
Q 027067 83 YKLQLNWLSLK 93 (229)
Q Consensus 83 ~~~~~~~~~~~ 93 (229)
.+.+++|+++.
T Consensus 81 ~~~~i~~v~~~ 91 (227)
T 1qhl_A 81 LKAGVCYSMLD 91 (227)
T ss_dssp BCSSEEEEEEE
T ss_pred hhcCcEEEEEe
Confidence 24567777753
No 160
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.28 E-value=6.3e-14 Score=132.16 Aligned_cols=160 Identities=13% Similarity=0.110 Sum_probs=102.2
Q ss_pred EEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCc-cEEEEcCEeCCCCchhhhhhhcceEeeccc-
Q 027067 17 SCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSA-GEILWNGHDITQSGIFHQYKLQLNWLSLKD- 94 (229)
Q Consensus 17 ~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~-G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~- 94 (229)
+..||...+++++++.+.+|+.++|+||||||||||+++|+|+.++.. |.+.+.+.+.... ...+.++++..
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~------~p~i~~~p~g~~ 114 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN------MPRIKTVPACQG 114 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT------SCEEEEEETTHH
T ss_pred ceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc------CCcEEEEecchH
Confidence 334678889999999999999999999999999999999999999887 8888877655422 12344443321
Q ss_pred ---------------------ccCCCCCHHHhHHHHHHhc-Cc---cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHH
Q 027067 95 ---------------------AVKEKFTVLDNVQWFEVLE-GK---QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQL 149 (229)
Q Consensus 95 ---------------------~~~~~~tv~e~l~~~~~~~-~~---~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~l 149 (229)
..+..+++.+|+....... .. ..........+|..+........+|+|++|++..
T Consensus 115 ~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g~~~~i~~ 194 (604)
T 3k1j_A 115 RRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTPAHERVEP 194 (604)
T ss_dssp HHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCCCGGGGEEC
T ss_pred HHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCccccccccccC
Confidence 0111112222211000000 00 0001112233343222223346799999999999
Q ss_pred HHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 027067 150 ARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAE 183 (229)
Q Consensus 150 Aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~ 183 (229)
++....++.+|++||... |++..+..+.+.|++
T Consensus 195 g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 195 GMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 999999999999999888 899888888888875
No 161
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=99.28 E-value=1.6e-13 Score=126.84 Aligned_cols=161 Identities=17% Similarity=0.164 Sum_probs=98.8
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHHC--CCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHh
Q 027067 28 HVNISIHDGGALVLTGTNGSGKSTFLRMLAG--FSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDN 105 (229)
Q Consensus 28 ~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~G--l~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~ 105 (229)
.+++++.++..+.|.|++||||||++++|.. +.+++.|++.+.+.|..... +..+. .+ +.+.. +|.++
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~e-l~~~~-~l------Phl~~--~Vvtd 228 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLE-LSVYE-GI------PHLLT--EVVTD 228 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSG-GGGGT-TC------TTBSS--SCBCS
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhh-hhhhc-cC------Ccccc--eeecC
Confidence 5788899999999999999999999999876 56677788888777765321 11111 11 11100 11122
Q ss_pred HHH----HHHh-cCccccHHHHHHHhCCChhhc---CCCCCCChhHHHHH----------HHHHHHhcCCC-eEEEeCCC
Q 027067 106 VQW----FEVL-EGKQGNSLPALELMGLGRLAK---EKARMLSMGQRKRL----------QLARLLAIDRP-IWLLDEPS 166 (229)
Q Consensus 106 l~~----~~~~-~~~~~~~~~~l~~~~l~~~~~---~~~~~LSgGqkqRv----------~lAral~~~p~-illlDEPt 166 (229)
... .... ...+. ..+++...|+.++.. +....+|+||+|+. .+|+++...|. ++++||++
T Consensus 229 ~~~a~~~L~~~~~Emer-R~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~ 307 (512)
T 2ius_A 229 MKDAANALRWCVNEMER-RYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFA 307 (512)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHH
Confidence 211 1100 11111 235677788765432 23346889988752 35666778898 89999999
Q ss_pred CCCCHHH---HHHHHHHHHHHHhCCcEEEEEeCChh
Q 027067 167 VALDYDG---VRLLEYIIAEHRKKGGIVIVATHLPI 199 (229)
Q Consensus 167 ~~LD~~~---~~~l~~~l~~~~~~g~tii~vtH~~~ 199 (229)
+-++... .+.+..+.+.-++.|.++|++||++.
T Consensus 308 ~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 308 DLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred HHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 9888432 12233333333445889999999987
No 162
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.27 E-value=4.6e-13 Score=108.31 Aligned_cols=72 Identities=11% Similarity=0.191 Sum_probs=50.5
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhH
Q 027067 30 NISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNV 106 (229)
Q Consensus 30 sl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l 106 (229)
|+++.+|++++|+||||||||||+++|+|+++ .+.+.+..+..... ......++|+++++..++.+++.+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKR-PGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCC-TTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCc-hhHhcCceEEeccHHHHHHHHhcCcE
Confidence 57788999999999999999999999999964 57777776654321 12245678888877666655554443
No 163
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.24 E-value=2.1e-12 Score=104.10 Aligned_cols=64 Identities=20% Similarity=0.188 Sum_probs=30.5
Q ss_pred HHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHH----HhCCcEEEEEeCChhhHHhhhccCCCCC
Q 027067 147 LQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEH----RKKGGIVIVATHLPIQIEDAMNLRLPPR 212 (229)
Q Consensus 147 v~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~~g~tii~vtH~~~~~~~~~~~~~~~~ 212 (229)
...|++++.+|+++++| ||++|..+.+.+.+.+.+. ..+....-...|+...-.+-.+.+.||-
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPGNNVVDISVPPT 197 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHHHHHHHTSCCC---------------------
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHHHHHHhhccCCchhhcccCCcccccccccCCC
Confidence 35589999999999999 9999998877666555442 1223333345677666666666665553
No 164
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=99.24 E-value=1.5e-11 Score=108.69 Aligned_cols=125 Identities=16% Similarity=0.200 Sum_probs=69.2
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEE-EcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHH
Q 027067 32 SIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEIL-WNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFE 110 (229)
Q Consensus 32 ~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~ 110 (229)
-+++|+++.|.||||||||||+..++.......|.+. ++... ... ..+...+++..+ ++.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~-~~~---~~~a~~lG~~~~------------~l~--- 117 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH-ALD---PEYAKKLGVDTD------------SLL--- 117 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC-CCC---HHHHHHTTCCGG------------GCE---
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC-CcC---HHHHHHcCCCHH------------HeE---
Confidence 4789999999999999999998777755433334443 33221 100 001111111000 000
Q ss_pred HhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcC--CCeEEEeCCCCCC----------CH---HH--
Q 027067 111 VLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAID--RPIWLLDEPSVAL----------DY---DG-- 173 (229)
Q Consensus 111 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~--p~illlDEPt~~L----------D~---~~-- 173 (229)
.. .+ .+. .|-+.++++++.+ |+++++|||++.+ |. ..
T Consensus 118 ---------------------i~-~~--~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r 171 (349)
T 2zr9_A 118 ---------------------VS-QP--DTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQAR 171 (349)
T ss_dssp ---------------------EE-CC--SSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHH
T ss_pred ---------------------Ee-cC--CCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHH
Confidence 00 01 122 2344577777755 9999999999998 32 11
Q ss_pred --HHHHHHHHHHHHhCCcEEEEEeCChhhH
Q 027067 174 --VRLLEYIIAEHRKKGGIVIVATHLPIQI 201 (229)
Q Consensus 174 --~~~l~~~l~~~~~~g~tii~vtH~~~~~ 201 (229)
.+.+.++...+++.|.|||+++|....+
T Consensus 172 ~~~~~l~~L~~~a~~~~~tVI~inh~~~~~ 201 (349)
T 2zr9_A 172 LMSQALRKMTGALNNSGTTAIFINELREKI 201 (349)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEECC---
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEecccccc
Confidence 2233333333456799999999976543
No 165
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=99.18 E-value=8e-12 Score=113.94 Aligned_cols=160 Identities=11% Similarity=0.072 Sum_probs=94.7
Q ss_pred eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCcc-EEEEcCEeCCCCchhhhh-hhcceEeecccccCCCC
Q 027067 23 QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAG-EILWNGHDITQSGIFHQY-KLQLNWLSLKDAVKEKF 100 (229)
Q Consensus 23 ~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G-~I~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 100 (229)
.+.|+++..-+.+|+++.|.|++|+|||||+..+++...+..| .|.|.+.+.+......+. ....++-.+. .....+
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~~-l~~g~l 268 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQN-LRTGKL 268 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHHTCCHHH-HHTSCC
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCCHHH-HhcCCC
Confidence 4567778778999999999999999999999999987765445 565544333221111110 0011111000 000011
Q ss_pred CHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHh--cCCCeEEEeCCCCCCCH-------
Q 027067 101 TVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLA--IDRPIWLLDEPSVALDY------- 171 (229)
Q Consensus 101 tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~--~~p~illlDEPt~~LD~------- 171 (229)
+..+ ..+..+++..++...+.-.....+|.++.+ +.++.++ .+|+++++|+++...+.
T Consensus 269 ~~~~-----------~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~ 335 (454)
T 2r6a_A 269 TPED-----------WGKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENR 335 (454)
T ss_dssp CHHH-----------HHHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----C
T ss_pred CHHH-----------HHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCH
Confidence 1111 112233444444333333345689999887 5566665 68999999999998743
Q ss_pred -HHHHHHHHHHHHHH-hCCcEEEEEeC
Q 027067 172 -DGVRLLEYIIAEHR-KKGGIVIVATH 196 (229)
Q Consensus 172 -~~~~~l~~~l~~~~-~~g~tii~vtH 196 (229)
.....+...|+.+. +.|.+||+++|
T Consensus 336 ~~~i~~i~~~Lk~lAke~~i~vi~~sq 362 (454)
T 2r6a_A 336 QQEVSEISRSLKALARELEVPVIALSQ 362 (454)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 22245555566654 45899999999
No 166
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.06 E-value=2.6e-10 Score=104.68 Aligned_cols=119 Identities=24% Similarity=0.272 Sum_probs=78.7
Q ss_pred eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHH
Q 027067 24 QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVL 103 (229)
Q Consensus 24 ~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~ 103 (229)
..++++++.+++| +.|+||+|+|||||+|++++..... +.++. ..
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~~-----------------------f~~is----------~~ 83 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANVP-----------------------FFHIS----------GS 83 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTCC-----------------------EEEEE----------GG
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCCC-----------------------eeeCC----------HH
Confidence 3455666777777 8899999999999999999832100 00010 00
Q ss_pred HhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCC----------CCCCHHH
Q 027067 104 DNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPS----------VALDYDG 173 (229)
Q Consensus 104 e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt----------~~LD~~~ 173 (229)
+... .... ++++++|..+++|....|.+|++||+. ++.|...
T Consensus 84 ~~~~--------------------------~~~g--~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~ 135 (476)
T 2ce7_A 84 DFVE--------------------------LFVG--VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDER 135 (476)
T ss_dssp GTTT--------------------------CCTT--HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHH
T ss_pred HHHH--------------------------HHhc--ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHH
Confidence 0000 0000 267788999999999999999999994 4667776
Q ss_pred HHHHHHHHHHHH----hCCcEEEEEeCChhhHHhhh
Q 027067 174 VRLLEYIIAEHR----KKGGIVIVATHLPIQIEDAM 205 (229)
Q Consensus 174 ~~~l~~~l~~~~----~~g~tii~vtH~~~~~~~~~ 205 (229)
.+.+..++..+. ..+..||.+||+++.+..++
T Consensus 136 ~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~al 171 (476)
T 2ce7_A 136 EQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPAL 171 (476)
T ss_dssp HHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGG
T ss_pred HHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhh
Confidence 667777777663 34678999999987766543
No 167
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.05 E-value=7.6e-12 Score=105.85 Aligned_cols=52 Identities=27% Similarity=0.316 Sum_probs=36.4
Q ss_pred CcEEEEeE-EEEe-CCeeeeeeeeEEEeC---CcEEEEEcCCCccHHHHHHHHHCCC
Q 027067 9 PRLLLKNV-SCMR-NAQQILRHVNISIHD---GGALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 9 ~~l~l~~l-~~~~-~~~~iL~~vsl~i~~---Ge~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
++++++|+ +++| ++.++|+++||+|.+ |++++|+|++||||||+.++|++.+
T Consensus 16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 57999999 9999 788899999999999 9999999999999999999999854
No 168
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.03 E-value=2.9e-11 Score=101.93 Aligned_cols=68 Identities=19% Similarity=0.275 Sum_probs=50.6
Q ss_pred eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH---CCCCCCccEEE--------EcCEeCCCCchhhhhhhcceEee
Q 027067 23 QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLA---GFSKPSAGEIL--------WNGHDITQSGIFHQYKLQLNWLS 91 (229)
Q Consensus 23 ~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~---Gl~~p~~G~I~--------~~g~~~~~~~~~~~~~~~~~~~~ 91 (229)
..++++.+ ++|++++|+|||||||||++++|+ |+..+++|.|+ .+|.++............+++++
T Consensus 17 ~~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 93 (252)
T 4e22_A 17 RLERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRF 93 (252)
T ss_dssp ------CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEE
T ss_pred hhhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEE
Confidence 34455543 789999999999999999999999 99999999999 88888754333344566777777
Q ss_pred cc
Q 027067 92 LK 93 (229)
Q Consensus 92 ~~ 93 (229)
+.
T Consensus 94 ~~ 95 (252)
T 4e22_A 94 VS 95 (252)
T ss_dssp EE
T ss_pred ec
Confidence 54
No 169
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.98 E-value=3.4e-10 Score=89.87 Aligned_cols=53 Identities=19% Similarity=0.235 Sum_probs=42.2
Q ss_pred EEEeEEEEeCCeeee--eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEE
Q 027067 12 LLKNVSCMRNAQQIL--RHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEI 67 (229)
Q Consensus 12 ~l~~l~~~~~~~~iL--~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I 67 (229)
.++.|... +...+ +++++++.+| +++|+||||||||||+++|.+++.+..|..
T Consensus 3 ~i~~l~i~--nf~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~ 57 (182)
T 3kta_A 3 YIEKLELK--GFKSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKA 57 (182)
T ss_dssp EEEEEEEE--SBGGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGG
T ss_pred eEEEEEEe--CeEeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccc
Confidence 34444433 34456 7899999999 999999999999999999999988776643
No 170
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.97 E-value=3.6e-11 Score=97.50 Aligned_cols=76 Identities=14% Similarity=0.075 Sum_probs=47.7
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHh
Q 027067 26 LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDN 105 (229)
Q Consensus 26 L~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~ 105 (229)
..+-.++-++|++++|+||||||||||+++|+|.+ |.+.+++.++.... .......++++|+....+.+++.++
T Consensus 19 ~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~ 92 (200)
T 4eun_A 19 YFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSPE--NIATMQRGIPLTDEDRWPWLRSLAE 92 (200)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCHH--HHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccHH--HHHHHhcCCCCCCcccccHHHHHHH
Confidence 33334667899999999999999999999999987 89999987764321 1122245666665544444455555
Q ss_pred HH
Q 027067 106 VQ 107 (229)
Q Consensus 106 l~ 107 (229)
+.
T Consensus 93 ~~ 94 (200)
T 4eun_A 93 WM 94 (200)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 171
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.95 E-value=5e-10 Score=99.22 Aligned_cols=42 Identities=17% Similarity=0.225 Sum_probs=35.3
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEE-EEcCEe
Q 027067 32 SIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEI-LWNGHD 73 (229)
Q Consensus 32 ~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I-~~~g~~ 73 (229)
-+++|+++.|.||+|||||||+..+++...+..|.| ++++..
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 478999999999999999999999999877777766 555543
No 172
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.94 E-value=1.4e-11 Score=99.96 Aligned_cols=61 Identities=21% Similarity=0.360 Sum_probs=48.0
Q ss_pred EeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEE--EEcCEeCC
Q 027067 14 KNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEI--LWNGHDIT 75 (229)
Q Consensus 14 ~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I--~~~g~~~~ 75 (229)
+|+++.++.....+.+++..++|++++|+|||||||||++++|++.+. ..|.+ +++|.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 3 TNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CCCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 567777788888888888899999999999999999999999999987 67888 88876653
No 173
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.90 E-value=5e-11 Score=115.41 Aligned_cols=74 Identities=20% Similarity=0.114 Sum_probs=57.7
Q ss_pred cCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCcEEEE-EeCChhhHHhhhc
Q 027067 133 KEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSV-ALDYDGVRLLEYIIAEHRKKGGIVIV-ATHLPIQIEDAMN 206 (229)
Q Consensus 133 ~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~-~LD~~~~~~l~~~l~~~~~~g~tii~-vtH~~~~~~~~~~ 206 (229)
+..+.-+|.|+.+|..++++++.+++++|+|||.. +||......+...+........+|++ +||+.+.+.+.++
T Consensus 185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~ 260 (773)
T 2xau_A 185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFN 260 (773)
T ss_dssp TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTT
T ss_pred CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhc
Confidence 45567899999999999999999999999999997 89977655444444444444567777 4999888877664
No 174
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.89 E-value=2.9e-10 Score=91.17 Aligned_cols=27 Identities=33% Similarity=0.529 Sum_probs=25.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHHCCCCC
Q 027067 36 GGALVLTGTNGSGKSTFLRMLAGFSKP 62 (229)
Q Consensus 36 Ge~~~iiG~NGsGKSTLl~~i~Gl~~p 62 (229)
|++++|+||||||||||+++|+|++++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 678999999999999999999999983
No 175
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.85 E-value=5.1e-09 Score=92.38 Aligned_cols=125 Identities=14% Similarity=0.099 Sum_probs=77.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHHhcC
Q 027067 35 DGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG 114 (229)
Q Consensus 35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~ 114 (229)
..-.++|+|++|+|||||++.++|.. +. ..+.+..... ..++.+..... .
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~-~~-----~~~~~~~t~~------~~~~~~~~~~~---------~--------- 215 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK-PE-----IASYPFTTRG------INVGQFEDGYF---------R--------- 215 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC-CE-----EECCTTCSSC------EEEEEEEETTE---------E---------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-Cc-----cCCCCCeeec------eeEEEEEecCc---------e---------
Confidence 44589999999999999999999865 21 1121111110 11122111100 0
Q ss_pred ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCcEEEE
Q 027067 115 KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLD-EPSVALDYDGVRLLEYIIAEHRKKGGIVIV 193 (229)
Q Consensus 115 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlD-EPt~~LD~~~~~~l~~~l~~~~~~g~tii~ 193 (229)
+..++.....+..+..+|+|++|++. +.+...++-++++| +|.+++|......+...+..... +..+|+
T Consensus 216 --------~~l~Dt~G~~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piil 285 (357)
T 2e87_A 216 --------YQIIDTPGLLDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLV 285 (357)
T ss_dssp --------EEEEECTTTSSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEE
T ss_pred --------EEEEeCCCccccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEE
Confidence 00011112334567789999998876 55556777889999 99999999877655555554432 677888
Q ss_pred Ee--CChh
Q 027067 194 AT--HLPI 199 (229)
Q Consensus 194 vt--H~~~ 199 (229)
+. ||+.
T Consensus 286 V~NK~Dl~ 293 (357)
T 2e87_A 286 VINKIDVA 293 (357)
T ss_dssp EECCTTTC
T ss_pred EEECcccC
Confidence 88 8864
No 176
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.83 E-value=1.3e-09 Score=96.85 Aligned_cols=131 Identities=20% Similarity=0.206 Sum_probs=76.8
Q ss_pred EEEEEcCCCccHHHHHHHHHCCCC-----------CCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhH
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFSK-----------PSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNV 106 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~~-----------p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l 106 (229)
+++|+|++|||||||++.|+|... |+.|.|.++|.++.-. ...|++.+.+. ..+ +.+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~-------DT~G~i~~lp~----~lv-e~f 248 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLV-------DTVGFIRGIPP----QIV-DAF 248 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEE-------ECCCBCSSCCG----GGH-HHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEE-------eCCCchhcCCH----HHH-HHH
Confidence 499999999999999999999876 5678999888654210 01122111000 000 000
Q ss_pred H-HHHHh----------c--Cc-------cccHHHHHHHhCCChhh----cCCCCCCChhHHHHHHHH----HHH-hcCC
Q 027067 107 Q-WFEVL----------E--GK-------QGNSLPALELMGLGRLA----KEKARMLSMGQRKRLQLA----RLL-AIDR 157 (229)
Q Consensus 107 ~-~~~~~----------~--~~-------~~~~~~~l~~~~l~~~~----~~~~~~LSgGqkqRv~lA----ral-~~~p 157 (229)
. ..... . .. .....+.++.+++.+.. ..++..+|+|++||+.++ +++ ..+|
T Consensus 249 ~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~ 328 (364)
T 2qtf_A 249 FVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIF 328 (364)
T ss_dssp HHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEE
T ss_pred HHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 0 00000 0 00 01123456666654322 344667898998988877 555 4444
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 027067 158 PIWLLDEPSVALDYDGVRLLEYIIAEH 184 (229)
Q Consensus 158 ~illlDEPt~~LD~~~~~~l~~~l~~~ 184 (229)
++ +|+|++|..+.+.+.+.+.+.
T Consensus 329 ~~----~~~SA~~g~gi~~L~~~I~~~ 351 (364)
T 2qtf_A 329 DV----IPISALKRTNLELLRDKIYQL 351 (364)
T ss_dssp EE----EECBTTTTBSHHHHHHHHHHH
T ss_pred cE----EEEECCCCcCHHHHHHHHHHH
Confidence 54 899999999888888777664
No 177
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.81 E-value=4.7e-10 Score=98.03 Aligned_cols=82 Identities=18% Similarity=0.289 Sum_probs=59.0
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchh---hhh-----hhcceEe-eccccc
Q 027067 26 LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF---HQY-----KLQLNWL-SLKDAV 96 (229)
Q Consensus 26 L~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~---~~~-----~~~~~~~-~~~~~~ 96 (229)
+++++|++.+|++++|+|+||+||||++..|++.+.+..|+|.+.+.|+...... ..+ +.++.++ ++....
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~ 174 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNA 174 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCC
Confidence 3689999999999999999999999999999999999999999988887543211 112 3456777 444333
Q ss_pred CCCCCHHHhHH
Q 027067 97 KEKFTVLDNVQ 107 (229)
Q Consensus 97 ~~~~tv~e~l~ 107 (229)
.+..++++++.
T Consensus 175 ~p~~~~~~~l~ 185 (320)
T 1zu4_A 175 DPASVVFDAIK 185 (320)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 33334445543
No 178
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.81 E-value=2.2e-09 Score=86.50 Aligned_cols=35 Identities=26% Similarity=0.319 Sum_probs=30.0
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCcc
Q 027067 31 ISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAG 65 (229)
Q Consensus 31 l~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G 65 (229)
+++.+|++++|+|||||||||++++|++++.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999977666
No 179
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.77 E-value=1.2e-09 Score=104.02 Aligned_cols=134 Identities=13% Similarity=-0.025 Sum_probs=80.9
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC--CccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHH
Q 027067 30 NISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP--SAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQ 107 (229)
Q Consensus 30 sl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~ 107 (229)
|+++++|..++|+|+||+|||||++.|++...+ ..|+| .+|..+..... ....+.+.+.++...+... ++..|+
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~-~e~~~giti~~~~~~~~~~-~~~~nl- 78 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTP-EAKLHRTTVRTGVAPLLFR-GHRVFL- 78 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSH-HHHHTTSCCSCEEEEEEET-TEEEEE-
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCH-HHHhcCCeEEecceEEeeC-CEEEEE-
Confidence 467789999999999999999999999976654 67888 66766554332 2223455555544333221 111111
Q ss_pred HHHHhcCccccHHHHHHHhCCChhhcCCCC-CCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 027067 108 WFEVLEGKQGNSLPALELMGLGRLAKEKAR-MLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK 186 (229)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~ 186 (229)
.|.+.+ .++ ......+-..+.-++++| |+.+++....+.+. .+.+
T Consensus 79 ------------------------iDTpG~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~~~~----~~~~ 124 (665)
T 2dy1_A 79 ------------------------LDAPGYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTERAWT----VAER 124 (665)
T ss_dssp ------------------------EECCCSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHHHHH----HHHH
T ss_pred ------------------------EeCCCccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHHHHH----HHHH
Confidence 111110 011 112223335688899999 99999988774433 3334
Q ss_pred CCcEEEEEeCChhhH
Q 027067 187 KGGIVIVATHLPIQI 201 (229)
Q Consensus 187 ~g~tii~vtH~~~~~ 201 (229)
.+..+|++.|.++..
T Consensus 125 ~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 125 LGLPRMVVVTKLDKG 139 (665)
T ss_dssp TTCCEEEEEECGGGC
T ss_pred ccCCEEEEecCCchh
Confidence 578888999987753
No 180
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.72 E-value=1.9e-11 Score=112.90 Aligned_cols=138 Identities=14% Similarity=0.134 Sum_probs=84.0
Q ss_pred eEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeeccc
Q 027067 15 NVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKD 94 (229)
Q Consensus 15 ~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~ 94 (229)
++...|.+..+++++++.+++| +.|+||||+|||||+++|+|... .+.|.+++.++..... ......+..+++..
T Consensus 45 ~lv~~l~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~-g~~~~~v~~lfq~a 119 (499)
T 2dhr_A 45 EIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFV-GVGAARVRDLFETA 119 (499)
T ss_dssp HHHHHHHCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCT-THHHHHHHHHTTTS
T ss_pred HHHHHhhchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhh-hhHHHHHHHHHHHH
Confidence 3333344556788899999998 99999999999999999999875 7889998877643211 11112233333332
Q ss_pred c-cCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 027067 95 A-VKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVA 168 (229)
Q Consensus 95 ~-~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~ 168 (229)
. ..+...+.|++........ ......+.+ ++....||||++|+..+++|...+|++ +||+.-.
T Consensus 120 ~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l---------~~LL~~Ldg~~~~~~viviAatn~p~~--LD~aLlr 188 (499)
T 2dhr_A 120 KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL---------NQLLVEMDGFEKDTAIVVMAATNRPDI--LDPALLR 188 (499)
T ss_dssp SSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHH---------HHHHHHGGGCCSSCCCEEEECCSCGGG--SCTTTSS
T ss_pred HhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHH---------HHHHHHhcccccCccEEEEEecCChhh--cCccccc
Confidence 1 2233344455432111000 000111111 111235789999999999999999987 8988763
No 181
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.67 E-value=8.4e-10 Score=97.45 Aligned_cols=169 Identities=18% Similarity=0.098 Sum_probs=82.7
Q ss_pred eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHC--CCCCCccEEEEcCEeCCCCchhhhhhhcceEeeccc-ccCCC
Q 027067 23 QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAG--FSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKD-AVKEK 99 (229)
Q Consensus 23 ~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~G--l~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 99 (229)
..+|++++++++ .++|+|++|||||||++.|+| ++++.+|.++.....+..... .......+...... ..+..
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~-~~~~~~~~~~~~~~~~~~~~ 99 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKI-DDGTREYAEFLHLPRKKFTD 99 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEEC-SSCSCCEEEETTSTTCCBSC
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecC-CCcccceeeeecCCCcccCC
Confidence 468999999998 899999999999999999999 567777766433322210000 00000011111110 00111
Q ss_pred C-CHHHhHHHHH-HhcCc----cccH---------HHHHHHhCCChhhc-CCCCCCChhHHHHHHHHHHHhcCCCeEEEe
Q 027067 100 F-TVLDNVQWFE-VLEGK----QGNS---------LPALELMGLGRLAK-EKARMLSMGQRKRLQLARLLAIDRPIWLLD 163 (229)
Q Consensus 100 ~-tv~e~l~~~~-~~~~~----~~~~---------~~~l~~~~l~~~~~-~~~~~LSgGqkqRv~lAral~~~p~illlD 163 (229)
+ .+.+.+.... ...+. .... ..-+..+++....+ ....+.++.++++..+++..+.+|+++|+.
T Consensus 100 ~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilv 179 (360)
T 3t34_A 100 FAAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILA 179 (360)
T ss_dssp HHHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEE
Confidence 0 1111111000 00000 0000 00000111111111 112346788999999999999999988887
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEeC
Q 027067 164 EPSVALDYDGVRLLEYIIAEHRKKG-GIVIVATH 196 (229)
Q Consensus 164 EPt~~LD~~~~~~l~~~l~~~~~~g-~tii~vtH 196 (229)
-..+..|.... ....+++.+...| .+|+++|.
T Consensus 180 v~~~~~~~~~~-~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 180 ISPANQDLATS-DAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp EEETTSCGGGC-HHHHHHHHSCTTCTTEEEEEEC
T ss_pred eecccCCcCCH-HHHHHHHHhcccCCCEEEEEeC
Confidence 54444554433 3344556655555 57777776
No 182
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.66 E-value=5.8e-09 Score=83.10 Aligned_cols=35 Identities=26% Similarity=0.195 Sum_probs=30.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHCCCCC-CccEEEE
Q 027067 35 DGGALVLTGTNGSGKSTFLRMLAGFSKP-SAGEILW 69 (229)
Q Consensus 35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-~~G~I~~ 69 (229)
+|++++|+||||||||||+++|++.+++ ..|.|..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 6899999999999999999999998864 4566544
No 183
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.66 E-value=3.4e-08 Score=86.81 Aligned_cols=129 Identities=11% Similarity=0.117 Sum_probs=80.2
Q ss_pred eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHH
Q 027067 24 QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVL 103 (229)
Q Consensus 24 ~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~ 103 (229)
+-|+.+.--+.+|+++.|.|++|+|||||+.-++.......+.|. |++. .++..
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl--------------------~fSl------Ems~~ 87 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVA--------------------VFSL------EMSAE 87 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEE--------------------EEES------SSCHH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEE--------------------EEeC------CCCHH
Confidence 345555557899999999999999999999887754332222222 2221 22333
Q ss_pred HhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 027067 104 DNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAE 183 (229)
Q Consensus 104 e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~ 183 (229)
+...-. ......+.+..+.+ ..||.++.+|+..|...+.+++++|.|+|...++ .+...++.
T Consensus 88 ql~~Rl----------ls~~~~v~~~~l~~---g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~-----~i~~~ir~ 149 (338)
T 4a1f_A 88 QLALRA----------LSDLTSINMHDLES---GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE-----QIRLQLRK 149 (338)
T ss_dssp HHHHHH----------HHHHHCCCHHHHHH---TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH-----HHHHHHHH
T ss_pred HHHHHH----------HHHhhCCCHHHHhc---CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH-----HHHHHHHH
Confidence 221110 00111111122222 4799999999999999999999999999975433 44444555
Q ss_pred HHh-C-CcEEEEEeC
Q 027067 184 HRK-K-GGIVIVATH 196 (229)
Q Consensus 184 ~~~-~-g~tii~vtH 196 (229)
+++ . |..+|+|-|
T Consensus 150 l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 150 LKSQHKELGIAFIDY 164 (338)
T ss_dssp HHHHCTTEEEEEEEE
T ss_pred HHHhcCCCCEEEEec
Confidence 443 3 678888876
No 184
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.65 E-value=2.2e-07 Score=81.40 Aligned_cols=46 Identities=13% Similarity=-0.039 Sum_probs=36.1
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCcEEEEEeCChhhH
Q 027067 155 IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK---KGGIVIVATHLPIQI 201 (229)
Q Consensus 155 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~---~g~tii~vtH~~~~~ 201 (229)
.+|.+|++||+... |......+..++..+.. .+.++|++||+++..
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 45889999999876 88877787777766655 578899999998543
No 185
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.64 E-value=7.6e-09 Score=85.67 Aligned_cols=40 Identities=20% Similarity=0.333 Sum_probs=35.6
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeC
Q 027067 31 ISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI 74 (229)
Q Consensus 31 l~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~ 74 (229)
.+.++|++++|.|+||||||||+++|+|+ .|+|.+.+++.
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~ 54 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV 54 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence 35578999999999999999999999998 68899988764
No 186
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.64 E-value=1.1e-08 Score=82.55 Aligned_cols=39 Identities=21% Similarity=0.169 Sum_probs=24.8
Q ss_pred CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067 22 AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 22 ~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
...+++||||++.+|++++|+|++||||||+.+.|++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 456899999999999999999999999999999999765
No 187
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.63 E-value=3.2e-10 Score=99.18 Aligned_cols=55 Identities=22% Similarity=0.229 Sum_probs=44.4
Q ss_pred EEEeCCeeeeeeeeEEEeCCc------EEEEEcCCCccHHHHHHHHHCCCC--CCccEEEEcC
Q 027067 17 SCMRNAQQILRHVNISIHDGG------ALVLTGTNGSGKSTFLRMLAGFSK--PSAGEILWNG 71 (229)
Q Consensus 17 ~~~~~~~~iL~~vsl~i~~Ge------~~~iiG~NGsGKSTLl~~i~Gl~~--p~~G~I~~~g 71 (229)
++.|+++..|++++..+.+++ ++||+||||||||||+++|++++. |+.|.|.+-+
T Consensus 67 ~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~ 129 (321)
T 3tqc_A 67 SFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVIT 129 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEE
T ss_pred HHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEe
Confidence 344566778888888888777 999999999999999999999987 5667755533
No 188
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.62 E-value=3.4e-10 Score=105.50 Aligned_cols=57 Identities=21% Similarity=0.237 Sum_probs=46.4
Q ss_pred EeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcC
Q 027067 14 KNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNG 71 (229)
Q Consensus 14 ~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g 71 (229)
+++.+.|+...++.++++++ +|++++|+||||+|||||+++|++...+..|.|.+.|
T Consensus 87 ~~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 87 EKVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp HHHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred HHHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 33444455556778888888 8999999999999999999999999988888876655
No 189
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.58 E-value=6.9e-09 Score=84.12 Aligned_cols=42 Identities=19% Similarity=0.087 Sum_probs=37.5
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeC
Q 027067 33 IHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI 74 (229)
Q Consensus 33 i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~ 74 (229)
..+|++++|+|+||||||||+++|++.+++..|.|.+.+.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 578999999999999999999999999988889998876554
No 190
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.55 E-value=1.9e-07 Score=84.59 Aligned_cols=40 Identities=30% Similarity=0.267 Sum_probs=35.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeC
Q 027067 35 DGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI 74 (229)
Q Consensus 35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~ 74 (229)
++.+++++|+|||||||++..|++.+.+..++|.+-+.|+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 5789999999999999999999999988888888766554
No 191
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.54 E-value=2.4e-08 Score=81.42 Aligned_cols=32 Identities=28% Similarity=0.424 Sum_probs=27.0
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067 30 NISIHDGGALVLTGTNGSGKSTFLRMLAGFSK 61 (229)
Q Consensus 30 sl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~ 61 (229)
|+...+|++++|+||||||||||++.|++.++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 44556899999999999999999999999875
No 192
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.52 E-value=2.5e-08 Score=80.63 Aligned_cols=115 Identities=18% Similarity=0.145 Sum_probs=58.5
Q ss_pred EEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHHhcCccc
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQG 117 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~ 117 (229)
+++|+|+|||||||+.++|+++ |...++..++ .+.+. .+. + +
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~~---------~~~~~--------~~~-~--~------------- 45 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDADVV---------AREVV--------AKD-S--P------------- 45 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHHH---------HHHTT--------CSS-C--H-------------
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchHHH---------HHHHc--------cCC-h--H-------------
Confidence 6899999999999999999993 5555543211 11100 000 0 0
Q ss_pred cHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q 027067 118 NSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHL 197 (229)
Q Consensus 118 ~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~ 197 (229)
...++.+.+|... -.|.|+.+|..+++.+..+|+.+..+ .+.++|..++.+.+.+... .+.++|+.+|.
T Consensus 46 ~~~~i~~~~g~~~-------~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~ 114 (206)
T 1jjv_A 46 LLSKIVEHFGAQI-------LTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPL 114 (206)
T ss_dssp HHHHHHHHHCTTC-------C------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTT
T ss_pred HHHHHHHHhCHHH-------hccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEech
Confidence 1122333344321 13677888888888777776543222 2233444444444433321 24577778887
Q ss_pred hhhH
Q 027067 198 PIQI 201 (229)
Q Consensus 198 ~~~~ 201 (229)
+.+.
T Consensus 115 l~e~ 118 (206)
T 1jjv_A 115 LIEN 118 (206)
T ss_dssp TTTT
T ss_pred hhhc
Confidence 6543
No 193
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.51 E-value=2.2e-08 Score=78.77 Aligned_cols=38 Identities=32% Similarity=0.386 Sum_probs=33.2
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCC
Q 027067 34 HDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDIT 75 (229)
Q Consensus 34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~ 75 (229)
.+|++++|+|+|||||||++++|++.+ |.+.+++.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence 468999999999999999999999875 88888876654
No 194
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.48 E-value=2.3e-08 Score=93.33 Aligned_cols=43 Identities=30% Similarity=0.406 Sum_probs=38.1
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCcc-EEE-EcCEeC
Q 027067 32 SIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAG-EIL-WNGHDI 74 (229)
Q Consensus 32 ~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G-~I~-~~g~~~ 74 (229)
.+++|++++|+|+||||||||+++|+|.+.|++| +|. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 5779999999999999999999999999999887 785 887654
No 195
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.48 E-value=6.6e-08 Score=78.72 Aligned_cols=29 Identities=28% Similarity=0.368 Sum_probs=27.5
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHCCCCC
Q 027067 34 HDGGALVLTGTNGSGKSTFLRMLAGFSKP 62 (229)
Q Consensus 34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p 62 (229)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 57999999999999999999999999886
No 196
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.48 E-value=7.1e-10 Score=97.47 Aligned_cols=65 Identities=22% Similarity=0.158 Sum_probs=54.4
Q ss_pred EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCC
Q 027067 11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDIT 75 (229)
Q Consensus 11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~ 75 (229)
++.+++.+.|+...+++++++.+.+|.+++|+|+||||||||++.|+|.+.+..|+|.+-+.+..
T Consensus 31 ie~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 31 VESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp HHCCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred hhcCCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 45555566666677889999999999999999999999999999999998888888877666553
No 197
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.46 E-value=2e-07 Score=81.83 Aligned_cols=28 Identities=18% Similarity=0.109 Sum_probs=25.5
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHCC
Q 027067 32 SIHDGGALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 32 ~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
-+++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999988874
No 198
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.45 E-value=1.2e-08 Score=83.54 Aligned_cols=58 Identities=17% Similarity=0.267 Sum_probs=41.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHHCCC---CCCccEEEE--------cCEeCCCCchhhhhhhcceEeecc
Q 027067 36 GGALVLTGTNGSGKSTFLRMLAGFS---KPSAGEILW--------NGHDITQSGIFHQYKLQLNWLSLK 93 (229)
Q Consensus 36 Ge~~~iiG~NGsGKSTLl~~i~Gl~---~p~~G~I~~--------~g~~~~~~~~~~~~~~~~~~~~~~ 93 (229)
+.+++|+|++||||||+.++|++.+ .+++|++.. .|.++............+++.++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 73 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVS 73 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeec
Confidence 5689999999999999999999765 678898877 666554211122344556666654
No 199
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.45 E-value=1.3e-06 Score=74.20 Aligned_cols=65 Identities=17% Similarity=0.123 Sum_probs=41.4
Q ss_pred ChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHH----------HHHHHHHHHHHHh----CCcEEEEEeCChhhHHhh
Q 027067 140 SMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDG----------VRLLEYIIAEHRK----KGGIVIVATHLPIQIEDA 204 (229)
Q Consensus 140 SgGqkqRv~lAral~~~p~illlDEPt~~LD~~~----------~~~l~~~l~~~~~----~g~tii~vtH~~~~~~~~ 204 (229)
+++++.|..++.+...+|.+|++||+.+-++... ...+...+..... .+..||.+|++++.+...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~ 175 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEA 175 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHH
Confidence 3567778888888888999999999987765321 1223333333211 235688889987655543
No 200
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.44 E-value=1.7e-08 Score=89.97 Aligned_cols=134 Identities=13% Similarity=0.063 Sum_probs=79.4
Q ss_pred eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccc-cCCCCC
Q 027067 23 QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDA-VKEKFT 101 (229)
Q Consensus 23 ~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~t 101 (229)
..+++++++.+++|++++|+||||||||||+++|+|. ..|.+..-+ ..... ....+++++|... +++..+
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~--~~~~~----~~~~lg~~~q~~~~l~dd~~ 226 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVN--LPLDR----LNFELGVAIDQFLVVFEDVK 226 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCS--SCTTT----HHHHHGGGTTCSCEEETTCC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEe--ccchh----HHHHHHHhcchhHHHHHHHH
Confidence 3578999999999999999999999999999999985 467775511 11111 1112344444321 122222
Q ss_pred HHHhHHHHHHhcC-c----cccHHHHHH---------------HhCC-ChhhcCCCCCCChhHHHHHHHHHHHhcCCCeE
Q 027067 102 VLDNVQWFEVLEG-K----QGNSLPALE---------------LMGL-GRLAKEKARMLSMGQRKRLQLARLLAIDRPIW 160 (229)
Q Consensus 102 v~e~l~~~~~~~~-~----~~~~~~~l~---------------~~~l-~~~~~~~~~~LSgGqkqRv~lAral~~~p~il 160 (229)
...++. ..... . .......+. ..-+ ....+.....+++|++||+..+.+++..|+++
T Consensus 227 ~~~~~~--r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLl 304 (377)
T 1svm_A 227 GTGGES--RDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLK 304 (377)
T ss_dssp CSTTTT--TTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHH
T ss_pred HHHHHH--hhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeE
Confidence 111100 00000 0 000111111 0001 11235567789999999999988888999998
Q ss_pred E-EeCCCC
Q 027067 161 L-LDEPSV 167 (229)
Q Consensus 161 l-lDEPt~ 167 (229)
+ ||+|+.
T Consensus 305 iyLd~~~~ 312 (377)
T 1svm_A 305 HCLERSEF 312 (377)
T ss_dssp HHHHTCTH
T ss_pred EEEeCCHH
Confidence 8 999987
No 201
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.43 E-value=3.6e-08 Score=85.08 Aligned_cols=59 Identities=10% Similarity=-0.017 Sum_probs=41.0
Q ss_pred CChhHHHHHHHHHHHh--cCCCeEEEeCCCCCCCHHH-HHHHHHHHHHHHhC-Cc--EEEEEeCChhhHHhh
Q 027067 139 LSMGQRKRLQLARLLA--IDRPIWLLDEPSVALDYDG-VRLLEYIIAEHRKK-GG--IVIVATHLPIQIEDA 204 (229)
Q Consensus 139 LSgGqkqRv~lAral~--~~p~illlDEPt~~LD~~~-~~~l~~~l~~~~~~-g~--tii~vtH~~~~~~~~ 204 (229)
+|.|++ .+++++. ..|.++++ |.+|... +..+.+.+.++.+. +. .+.+++|+-..+++.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l 165 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTI 165 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHH
Confidence 888886 5566666 67889998 8999876 66677777777653 43 566677765544444
No 202
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.41 E-value=4.6e-07 Score=82.14 Aligned_cols=44 Identities=14% Similarity=0.132 Sum_probs=36.9
Q ss_pred cCCCeEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCcEEEEEeCCh
Q 027067 155 IDRPIWLLDEPSVALDY-DGVRLLEYIIAEHRKKGGIVIVATHLP 198 (229)
Q Consensus 155 ~~p~illlDEPt~~LD~-~~~~~l~~~l~~~~~~g~tii~vtH~~ 198 (229)
.+|++|++||+..-.+. ..++.+...+..+.+.|..||++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 48999999999887765 567788888888877888999999973
No 203
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.37 E-value=6.3e-07 Score=77.94 Aligned_cols=28 Identities=25% Similarity=0.251 Sum_probs=25.3
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHCC
Q 027067 32 SIHDGGALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 32 ~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
-+++|+++.|.||+|||||||+..++..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5789999999999999999999888764
No 204
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.37 E-value=6.2e-07 Score=77.76 Aligned_cols=132 Identities=13% Similarity=0.147 Sum_probs=78.0
Q ss_pred eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHH
Q 027067 24 QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVL 103 (229)
Q Consensus 24 ~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~ 103 (229)
+.|+.+.--+.+|+++.|.|++|+|||||+..++....- .| ..+.|++. .++..
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g-------------------~~vl~~sl------E~s~~ 109 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND-------------------DVVNLHSL------EMGKK 109 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT-------------------CEEEEEES------SSCHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC-------------------CeEEEEEC------CCCHH
Confidence 346666656899999999999999999998877643211 11 01222221 12333
Q ss_pred HhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 027067 104 DNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAE 183 (229)
Q Consensus 104 e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~ 183 (229)
+...-... ....+.+..+.+.. ..||.++++|+..|...+.++++++.|+|... . ..+...++.
T Consensus 110 ~l~~R~~~----------~~~~i~~~~l~~~~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~--~---~~i~~~i~~ 173 (315)
T 3bh0_A 110 ENIKRLIV----------TAGSINAQKIKAAR-RDFASEDWGKLSMAIGEISNSNINIFDKAGQS--V---NYIWSKTRQ 173 (315)
T ss_dssp HHHHHHHH----------HHTTCCHHHHHSCH-HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB--H---HHHHHHHHH
T ss_pred HHHHHHHH----------HHcCCCHHHHhcCC-CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC--H---HHHHHHHHH
Confidence 32211100 00011111222111 23899999999999999999999999998643 2 234444455
Q ss_pred HHh-CCcE--EEEEeCC
Q 027067 184 HRK-KGGI--VIVATHL 197 (229)
Q Consensus 184 ~~~-~g~t--ii~vtH~ 197 (229)
+++ .+.. +|++-|-
T Consensus 174 l~~~~~~~~~lVVID~l 190 (315)
T 3bh0_A 174 TKRKNPGKRVIVMIDYL 190 (315)
T ss_dssp HHHTSSSCCEEEEEECG
T ss_pred HHHhcCCCCeEEEEeCc
Confidence 443 3666 8888773
No 205
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.35 E-value=3.8e-08 Score=85.82 Aligned_cols=30 Identities=13% Similarity=0.345 Sum_probs=25.9
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHCCCCCC
Q 027067 34 HDGGALVLTGTNGSGKSTFLRMLAGFSKPS 63 (229)
Q Consensus 34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~ 63 (229)
..+..+.|.||+|+|||||++.+++...+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 457899999999999999999999876543
No 206
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.32 E-value=2.7e-07 Score=89.73 Aligned_cols=32 Identities=25% Similarity=0.429 Sum_probs=28.9
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC
Q 027067 31 ISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP 62 (229)
Q Consensus 31 l~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p 62 (229)
|.+.+|+.+.|+||||||||||+++|+|.+.+
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 36889999999999999999999999998753
No 207
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=98.32 E-value=3.9e-07 Score=70.63 Aligned_cols=31 Identities=29% Similarity=0.521 Sum_probs=25.5
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHC
Q 027067 27 RHVNISIHDGGALVLTGTNGSGKSTFLRMLAG 58 (229)
Q Consensus 27 ~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~G 58 (229)
++.++++.+| +.+|+|||||||||++.+|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 3455666654 999999999999999999873
No 208
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.29 E-value=2.2e-07 Score=72.66 Aligned_cols=33 Identities=30% Similarity=0.398 Sum_probs=27.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcC
Q 027067 35 DGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNG 71 (229)
Q Consensus 35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g 71 (229)
.|++++|+|+|||||||++++|++.+.+ +++++
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4789999999999999999999998754 45553
No 209
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.26 E-value=6.3e-06 Score=67.96 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=31.3
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCcEEEEEeC
Q 027067 155 IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK--KGGIVIVATH 196 (229)
Q Consensus 155 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~--~g~tii~vtH 196 (229)
.+++++|+..+.+.++....+.+..+...+.. ...++|++||
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 47899999999988888777676666654432 1358888998
No 210
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.21 E-value=5e-06 Score=69.26 Aligned_cols=34 Identities=26% Similarity=0.561 Sum_probs=24.3
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067 26 LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK 61 (229)
Q Consensus 26 L~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~ 61 (229)
++++++.+.+| +.|+||+|+|||||+++|++...
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 44455555555 88999999999999999998754
No 211
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.20 E-value=2.8e-07 Score=81.20 Aligned_cols=41 Identities=22% Similarity=0.250 Sum_probs=35.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCC
Q 027067 35 DGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDIT 75 (229)
Q Consensus 35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~ 75 (229)
++.+++|+|++|||||||++.|+|...++.|+|.+.+.+..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 47899999999999999999999998888888888766543
No 212
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.20 E-value=3.1e-07 Score=72.54 Aligned_cols=40 Identities=30% Similarity=0.414 Sum_probs=32.3
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHCCCCCCcc--EEEEcCEeC
Q 027067 34 HDGGALVLTGTNGSGKSTFLRMLAGFSKPSAG--EILWNGHDI 74 (229)
Q Consensus 34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G--~I~~~g~~~ 74 (229)
.+|++++|+|++||||||+.++|++.+++ .| .|.+++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 47999999999999999999999998765 56 666665443
No 213
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.19 E-value=8.4e-08 Score=86.77 Aligned_cols=58 Identities=24% Similarity=0.231 Sum_probs=48.8
Q ss_pred eEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCC
Q 027067 15 NVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQ 76 (229)
Q Consensus 15 ~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~ 76 (229)
++++.|+... ++++|+ +|++++++|+|||||||++..|++.+.+..|+|.+.+.|+..
T Consensus 81 ~L~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r 138 (425)
T 2ffh_A 81 ALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (425)
T ss_dssp HHHHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred HHHHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence 4445565543 678887 899999999999999999999999999999999998877754
No 214
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.18 E-value=1.5e-06 Score=69.68 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=22.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHCCCC
Q 027067 37 GALVLTGTNGSGKSTFLRMLAGFSK 61 (229)
Q Consensus 37 e~~~iiG~NGsGKSTLl~~i~Gl~~ 61 (229)
..+.|.||+|+|||||+++++....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6899999999999999999987654
No 215
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.18 E-value=7e-07 Score=72.09 Aligned_cols=31 Identities=19% Similarity=0.157 Sum_probs=28.2
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067 31 ISIHDGGALVLTGTNGSGKSTFLRMLAGFSK 61 (229)
Q Consensus 31 l~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~ 61 (229)
-++++|++++|+|++||||||+++.|++.++
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3678899999999999999999999999874
No 216
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.15 E-value=1.9e-06 Score=74.02 Aligned_cols=30 Identities=17% Similarity=0.373 Sum_probs=26.8
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067 31 ISIHDGGALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 31 l~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
+.+.++..+.|.||+|+|||||++++++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 346788999999999999999999999865
No 217
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.15 E-value=7.2e-07 Score=73.93 Aligned_cols=47 Identities=17% Similarity=0.197 Sum_probs=33.3
Q ss_pred eeeeeeeEEEe---CCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcC
Q 027067 24 QILRHVNISIH---DGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNG 71 (229)
Q Consensus 24 ~iL~~vsl~i~---~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g 71 (229)
.-|.++|+.+. +|.+++|.|++||||||+++.|+..+.+ .+.+....
T Consensus 11 ~~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~ 60 (229)
T 4eaq_A 11 VDLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTR 60 (229)
T ss_dssp ---------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEEC
T ss_pred cCccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeec
Confidence 34778888887 8999999999999999999999999887 66775543
No 218
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=98.10 E-value=1.1e-05 Score=71.35 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=24.4
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHCC
Q 027067 33 IHDGGALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 33 i~~Ge~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
+++|+++.|.|++|+|||||...++..
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999999777654
No 219
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=98.07 E-value=2.4e-06 Score=69.46 Aligned_cols=30 Identities=30% Similarity=0.575 Sum_probs=24.8
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHH
Q 027067 27 RHVNISIHDGGALVLTGTNGSGKSTFLRMLA 57 (229)
Q Consensus 27 ~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~ 57 (229)
.+.++++.+ .+.+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 345666766 499999999999999999885
No 220
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.05 E-value=1.1e-05 Score=69.54 Aligned_cols=43 Identities=14% Similarity=-0.031 Sum_probs=31.8
Q ss_pred cCCCeEEEeCCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q 027067 155 IDRPIWLLDEPSVA-LDYDGVRLLEYIIAEHRKKGGIVIVATHL 197 (229)
Q Consensus 155 ~~p~illlDEPt~~-LD~~~~~~l~~~l~~~~~~g~tii~vtH~ 197 (229)
.++++|++||+-.- -+...++.+...+..+.+.+..+|++|+.
T Consensus 97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~ 140 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR 140 (324)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 46999999998652 23366778888888877777777777764
No 221
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.05 E-value=5.4e-07 Score=73.22 Aligned_cols=43 Identities=26% Similarity=0.253 Sum_probs=36.8
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCcc--EEEEcCEe
Q 027067 31 ISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAG--EILWNGHD 73 (229)
Q Consensus 31 l~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G--~I~~~g~~ 73 (229)
+.+.+|.+++|+|++||||||+.+.|++.+.|..| .+.+++..
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 34678999999999999999999999999887788 77776543
No 222
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.05 E-value=4e-07 Score=81.33 Aligned_cols=51 Identities=16% Similarity=0.286 Sum_probs=45.9
Q ss_pred cEEEEeEEEEeCC-eeeee--------------eeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067 10 RLLLKNVSCMRNA-QQILR--------------HVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 10 ~l~l~~l~~~~~~-~~iL~--------------~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.+.++||++.|.. +..|+ |+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 4778899999964 66888 899999999999999999999999999999875
No 223
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.04 E-value=2.6e-07 Score=81.77 Aligned_cols=54 Identities=17% Similarity=0.192 Sum_probs=38.7
Q ss_pred CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEE
Q 027067 9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEIL 68 (229)
Q Consensus 9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~ 68 (229)
..+.+.|++..|+++.++++++|+| +|+|++|+|||||++.|.|...+..|.+.
T Consensus 16 ~~v~~~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~ 69 (361)
T 2qag_A 16 GYVGFANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIP 69 (361)
T ss_dssp -----CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-------
T ss_pred ceEEeccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCccc
Confidence 3588889988888888999999987 99999999999999999988666555443
No 224
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.04 E-value=2.6e-06 Score=69.21 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067 35 DGGALVLTGTNGSGKSTFLRMLAGFSK 61 (229)
Q Consensus 35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~~ 61 (229)
.+..+.|.||+|+|||||++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999987543
No 225
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=98.02 E-value=8.6e-06 Score=73.74 Aligned_cols=38 Identities=16% Similarity=0.220 Sum_probs=30.4
Q ss_pred eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067 24 QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK 61 (229)
Q Consensus 24 ~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~ 61 (229)
+-|+.+.--+.+|+++.|.|++|+|||||+.-++....
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 34555554589999999999999999999987776543
No 226
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.99 E-value=5.5e-06 Score=64.77 Aligned_cols=27 Identities=37% Similarity=0.588 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067 34 HDGGALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
++|..++|+|++|+|||||++.++|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999999975
No 227
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.98 E-value=5.7e-06 Score=74.76 Aligned_cols=37 Identities=22% Similarity=0.464 Sum_probs=32.4
Q ss_pred EEEEEcCCCccHHHHHHHHHCCCC------------CCccEEEEcCEeC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFSK------------PSAGEILWNGHDI 74 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~~------------p~~G~I~~~g~~~ 74 (229)
.++|+|+||||||||++.|+|... +.+|.+.++|+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 799999999999999999999864 6679999999864
No 228
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.98 E-value=4.7e-06 Score=66.14 Aligned_cols=48 Identities=25% Similarity=0.438 Sum_probs=27.3
Q ss_pred eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCC----C----CCCccEEEEcCE
Q 027067 24 QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGF----S----KPSAGEILWNGH 72 (229)
Q Consensus 24 ~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl----~----~p~~G~I~~~g~ 72 (229)
.+++++++..++. .++++|++|+|||||++.+.+- . .++.+.+.++|.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~ 67 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNI 67 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTE
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCE
Confidence 4788999998887 6799999999999999999972 2 223456666664
No 229
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.97 E-value=5.3e-07 Score=77.77 Aligned_cols=60 Identities=23% Similarity=0.235 Sum_probs=48.1
Q ss_pred eEEEEeCCeeeeee-eeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCC
Q 027067 15 NVSCMRNAQQILRH-VNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQS 77 (229)
Q Consensus 15 ~l~~~~~~~~iL~~-vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~ 77 (229)
++.+.|++.. ++ ++++.+ |++++++|+||+||||++..|++.+.+..|+|.+.+.+....
T Consensus 79 ~l~~~~~~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~ 139 (297)
T 1j8m_F 79 ELSNLFGGDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRP 139 (297)
T ss_dssp HHHHHTTCSC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSS
T ss_pred HHHHHhcccc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCH
Confidence 3444555443 56 788876 999999999999999999999999988888999988776543
No 230
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.95 E-value=1.2e-06 Score=70.20 Aligned_cols=55 Identities=25% Similarity=0.451 Sum_probs=38.8
Q ss_pred EEeCC-eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCC--------CCCCccEEEEcCEe
Q 027067 18 CMRNA-QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGF--------SKPSAGEILWNGHD 73 (229)
Q Consensus 18 ~~~~~-~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl--------~~p~~G~I~~~g~~ 73 (229)
+.|++ ..+++++|+..++++ ++|+|++|+|||||++.+.+- ..++.+.+.++|..
T Consensus 7 ~~~~~~~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 70 (198)
T 1f6b_A 7 WIYSGFSSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT 70 (198)
T ss_dssp ------CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEE
T ss_pred HHHHHHHHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEE
Confidence 34544 468899999888874 789999999999999999873 23345667666643
No 231
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.93 E-value=1.4e-05 Score=70.60 Aligned_cols=43 Identities=26% Similarity=0.440 Sum_probs=33.0
Q ss_pred EEEEeEEEE-eCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH
Q 027067 11 LLLKNVSCM-RNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLA 57 (229)
Q Consensus 11 l~l~~l~~~-~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~ 57 (229)
..++.|+.. |. .+++..+++.+ .+.+|+|||||||||+|.+|.
T Consensus 3 M~l~~L~l~nFr---~~~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 3 MILKEIRMNNFK---SHVNSRIKFEK-GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEEEEEET---TEEEEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred cEEeEEEEEccc---cccceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence 456666543 43 34677888877 499999999999999999986
No 232
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.92 E-value=1.1e-05 Score=68.64 Aligned_cols=31 Identities=23% Similarity=0.441 Sum_probs=27.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHCCCCCCccEE
Q 027067 37 GALVLTGTNGSGKSTFLRMLAGFSKPSAGEI 67 (229)
Q Consensus 37 e~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I 67 (229)
..+.|+||+|+||||+.++|++...+..|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 5899999999999999999999887666644
No 233
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.92 E-value=1.1e-07 Score=82.51 Aligned_cols=44 Identities=16% Similarity=0.110 Sum_probs=33.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhH
Q 027067 156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQI 201 (229)
Q Consensus 156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~ 201 (229)
++.++++|| ...++......+.+.+.+... ...+|++|+++..+
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~~l 176 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVTRI 176 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGGGS
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchhhC
Confidence 667999999 788998888888888876533 45577788776543
No 234
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.91 E-value=1.9e-05 Score=66.53 Aligned_cols=28 Identities=25% Similarity=0.425 Sum_probs=24.5
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067 33 IHDGGALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 33 i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
+.++.-+.|.||+|+|||||+++++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3567789999999999999999998764
No 235
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.90 E-value=2.2e-07 Score=80.91 Aligned_cols=57 Identities=16% Similarity=0.195 Sum_probs=46.1
Q ss_pred eEEEEeCCeeeeeeeeEEEeCCcE--EEEEcCCCccHHHHHHHHHCCCCCCccEEEEcC
Q 027067 15 NVSCMRNAQQILRHVNISIHDGGA--LVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNG 71 (229)
Q Consensus 15 ~l~~~~~~~~iL~~vsl~i~~Ge~--~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g 71 (229)
+++..+|...+++.++..++.|++ +.+.||+|+||||+++++++.+.+..+.+.+.+
T Consensus 23 ~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~ 81 (340)
T 1sxj_C 23 TLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLE 81 (340)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEE
T ss_pred cHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEE
Confidence 334446777889999999999999 999999999999999999998776665544433
No 236
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.89 E-value=3.1e-06 Score=67.12 Aligned_cols=37 Identities=32% Similarity=0.384 Sum_probs=31.6
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEE
Q 027067 32 SIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEIL 68 (229)
Q Consensus 32 ~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~ 68 (229)
...+|.+++|+|++||||||+.+.|++.+.+..+.+.
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~ 45 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVE 45 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 3457999999999999999999999998877666663
No 237
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.86 E-value=6.5e-06 Score=65.36 Aligned_cols=32 Identities=28% Similarity=0.464 Sum_probs=26.5
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHHCC
Q 027067 28 HVNISIHDGGALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 28 ~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
++|++..+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888899999999999999999999999875
No 238
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.85 E-value=1.9e-05 Score=61.04 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=21.9
Q ss_pred EEEEEcCCCccHHHHHHHHHCCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFSK 61 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~~ 61 (229)
.++|+|++|+|||||++.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999999754
No 239
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.84 E-value=6.4e-06 Score=66.03 Aligned_cols=21 Identities=43% Similarity=0.575 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAG 58 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~G 58 (229)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 240
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.82 E-value=1.2e-05 Score=63.05 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.++|+|++|+|||||++.++|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 241
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.82 E-value=9.7e-06 Score=72.59 Aligned_cols=41 Identities=20% Similarity=0.282 Sum_probs=33.8
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHCC-----------CCCCccEEEEcCE
Q 027067 32 SIHDGGALVLTGTNGSGKSTFLRMLAGF-----------SKPSAGEILWNGH 72 (229)
Q Consensus 32 ~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl-----------~~p~~G~I~~~g~ 72 (229)
.+..|..++|+|+||+|||||+++|+|. +.|..|.|.+.+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4567889999999999999999999998 6778888887653
No 242
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.80 E-value=9.6e-06 Score=65.37 Aligned_cols=30 Identities=23% Similarity=0.332 Sum_probs=26.2
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067 32 SIHDGGALVLTGTNGSGKSTFLRMLAGFSK 61 (229)
Q Consensus 32 ~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~ 61 (229)
...+|.+++|+||+|||||||.+.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356899999999999999999999988764
No 243
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.72 E-value=1.9e-06 Score=83.81 Aligned_cols=32 Identities=16% Similarity=0.374 Sum_probs=28.9
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067 30 NISIHDGGALVLTGTNGSGKSTFLRMLAGFSK 61 (229)
Q Consensus 30 sl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~ 61 (229)
++.+.+++.+.|+||+|+|||||.++|++...
T Consensus 505 ~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp CCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred hcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 56778999999999999999999999998763
No 244
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.72 E-value=4.7e-06 Score=67.09 Aligned_cols=47 Identities=19% Similarity=0.183 Sum_probs=32.4
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067 155 IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 155 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~ 203 (229)
.+|.++++||.-. +|......+...+... ..+..+|++|++...+..
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~~~~~ 171 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQKLPV 171 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGGGSCH
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChHhCCH
Confidence 4678999999755 7777766666665432 235678899988665443
No 245
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.69 E-value=0.00018 Score=63.01 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=23.2
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067 34 HDGGALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.+..-+.|.||.|+|||||+++++...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 346689999999999999999998754
No 246
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.65 E-value=0.00022 Score=63.09 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=23.6
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHC
Q 027067 32 SIHDGGALVLTGTNGSGKSTFLRMLAG 58 (229)
Q Consensus 32 ~i~~Ge~~~iiG~NGsGKSTLl~~i~G 58 (229)
-+++|+++.|.|+.|+|||||...++-
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 368999999999999999999876654
No 247
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.64 E-value=1.5e-05 Score=63.42 Aligned_cols=38 Identities=29% Similarity=0.317 Sum_probs=29.5
Q ss_pred CcEEEEEcCCCccHHHHHHHHHCCCCCC---ccEEEEcCEe
Q 027067 36 GGALVLTGTNGSGKSTFLRMLAGFSKPS---AGEILWNGHD 73 (229)
Q Consensus 36 Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~ 73 (229)
-.+++|+|++|||||||++.|.+.+++. -|.|..++.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 3589999999999999999999875433 4777776543
No 248
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.64 E-value=2.7e-05 Score=61.19 Aligned_cols=25 Identities=40% Similarity=0.646 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHCCCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFSKP 62 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~~p 62 (229)
.++|+|++|+|||||++.++|...+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~ 28 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKS 28 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc
Confidence 4799999999999999999997544
No 249
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.64 E-value=0.00029 Score=58.11 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=23.3
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067 33 IHDGGALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 33 i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
+....-+.|.||.|+|||||.+.++...
T Consensus 36 ~~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 36 AKVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3455668899999999999999998743
No 250
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.62 E-value=3.5e-05 Score=66.96 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=24.2
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067 34 HDGGALVLTGTNGSGKSTFLRMLAGFSK 61 (229)
Q Consensus 34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~ 61 (229)
..+..+.|.||.|+|||||++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999987653
No 251
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.62 E-value=2.7e-05 Score=61.27 Aligned_cols=25 Identities=36% Similarity=0.494 Sum_probs=22.2
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHC
Q 027067 34 HDGGALVLTGTNGSGKSTFLRMLAG 58 (229)
Q Consensus 34 ~~Ge~~~iiG~NGsGKSTLl~~i~G 58 (229)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999999984
No 252
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.61 E-value=2.2e-05 Score=62.94 Aligned_cols=35 Identities=31% Similarity=0.504 Sum_probs=27.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeC
Q 027067 36 GGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI 74 (229)
Q Consensus 36 Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~ 74 (229)
..+++|+|++||||||+.+.|++.+ |.+.+++.++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence 4689999999999999999998765 4455654433
No 253
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.57 E-value=0.00013 Score=62.80 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=24.4
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHC
Q 027067 32 SIHDGGALVLTGTNGSGKSTFLRMLAG 58 (229)
Q Consensus 32 ~i~~Ge~~~iiG~NGsGKSTLl~~i~G 58 (229)
-+++|+++.|.|++|+|||||+..++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999987774
No 254
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.57 E-value=3.4e-05 Score=63.58 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=23.6
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHC
Q 027067 32 SIHDGGALVLTGTNGSGKSTFLRMLAG 58 (229)
Q Consensus 32 ~i~~Ge~~~iiG~NGsGKSTLl~~i~G 58 (229)
.-.+|.+++|+|++||||||+.+.|++
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999999999986
No 255
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.57 E-value=5.4e-06 Score=73.19 Aligned_cols=37 Identities=32% Similarity=0.486 Sum_probs=32.9
Q ss_pred eeeeeeeEEEeCCcE--EEEEcCCCccHHHHHHHHHCCC
Q 027067 24 QILRHVNISIHDGGA--LVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 24 ~iL~~vsl~i~~Ge~--~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.+++.+++.+++|++ ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 467778888899998 9999999999999999999864
No 256
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.50 E-value=1.8e-05 Score=65.86 Aligned_cols=32 Identities=31% Similarity=0.452 Sum_probs=25.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHH---CCCCCCccEE
Q 027067 36 GGALVLTGTNGSGKSTFLRMLA---GFSKPSAGEI 67 (229)
Q Consensus 36 Ge~~~iiG~NGsGKSTLl~~i~---Gl~~p~~G~I 67 (229)
.-+++|.||+||||||+.+.|+ |+...+.|.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~ 43 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAM 43 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcH
Confidence 4589999999999999999999 5544555554
No 257
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.50 E-value=3.1e-05 Score=64.61 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=33.2
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeC
Q 027067 32 SIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI 74 (229)
Q Consensus 32 ~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~ 74 (229)
...++.++.|+|++||||||+.+.|+..+. .+.+.+++..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 567789999999999999999999998764 35577766443
No 258
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.48 E-value=6.1e-05 Score=58.11 Aligned_cols=23 Identities=26% Similarity=0.193 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
No 259
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.45 E-value=7.5e-05 Score=58.22 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067 35 DGGALVLTGTNGSGKSTFLRMLAGFSK 61 (229)
Q Consensus 35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~~ 61 (229)
.|.++.|+|++||||||+.+.|+..+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 367899999999999999999998654
No 260
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.40 E-value=9.2e-05 Score=58.09 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067 35 DGGALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
+|.+++|.|++||||||+.+.|+-.+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998643
No 261
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.39 E-value=0.00068 Score=51.44 Aligned_cols=28 Identities=32% Similarity=0.417 Sum_probs=23.4
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067 34 HDGGALVLTGTNGSGKSTFLRMLAGFSK 61 (229)
Q Consensus 34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~ 61 (229)
..+.-+.|.||.|+|||++.+.|.....
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 3456689999999999999999987644
No 262
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.36 E-value=4.4e-05 Score=67.65 Aligned_cols=48 Identities=23% Similarity=0.318 Sum_probs=41.9
Q ss_pred CCCeEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067 156 DRPIWLLDEPSVALD---YDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED 203 (229)
Q Consensus 156 ~p~illlDEPt~~LD---~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~ 203 (229)
.|.++++||-=.-++ +...+.+.++++..++.|..++++||+++++..
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~~ 312 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFLA 312 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGGS
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhhC
Confidence 588999999988885 667788999999999999999999999988753
No 263
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.34 E-value=0.0004 Score=60.54 Aligned_cols=28 Identities=25% Similarity=0.411 Sum_probs=24.9
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHC
Q 027067 31 ISIHDGGALVLTGTNGSGKSTFLRMLAG 58 (229)
Q Consensus 31 l~i~~Ge~~~iiG~NGsGKSTLl~~i~G 58 (229)
--+.+|.++.|.||.|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3578889999999999999999998875
No 264
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.33 E-value=0.0001 Score=58.56 Aligned_cols=31 Identities=32% Similarity=0.369 Sum_probs=25.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcC
Q 027067 36 GGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNG 71 (229)
Q Consensus 36 Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g 71 (229)
..+++|+|++||||||+.+.|+.. |-..++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~ 38 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDL 38 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcc
Confidence 458999999999999999999985 6556653
No 265
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.33 E-value=0.00012 Score=59.15 Aligned_cols=24 Identities=42% Similarity=0.385 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHC
Q 027067 35 DGGALVLTGTNGSGKSTFLRMLAG 58 (229)
Q Consensus 35 ~Ge~~~iiG~NGsGKSTLl~~i~G 58 (229)
.+-+++|+|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999997
No 266
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.32 E-value=0.00012 Score=56.26 Aligned_cols=19 Identities=47% Similarity=0.896 Sum_probs=18.3
Q ss_pred EEEEEcCCCccHHHHHHHH
Q 027067 38 ALVLTGTNGSGKSTFLRML 56 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i 56 (229)
+++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 267
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.32 E-value=0.00016 Score=63.89 Aligned_cols=36 Identities=25% Similarity=0.320 Sum_probs=30.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHHC-----------CCCCCccEEEEcC
Q 027067 36 GGALVLTGTNGSGKSTFLRMLAG-----------FSKPSAGEILWNG 71 (229)
Q Consensus 36 Ge~~~iiG~NGsGKSTLl~~i~G-----------l~~p~~G~I~~~g 71 (229)
|-.++|+|.+|+|||||++.|+| -+.|+.|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 35689999999999999999998 3457778888765
No 268
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.32 E-value=0.00011 Score=57.96 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=23.0
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHCC
Q 027067 34 HDGGALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.++.++.|+|++||||||+.+.|+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999753
No 269
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.32 E-value=0.0016 Score=56.20 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=23.6
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067 34 HDGGALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.+..-+.|.||.|+|||||.+.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455778999999999999999999865
No 270
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.31 E-value=0.0001 Score=61.69 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=21.2
Q ss_pred cEEEEEcCCCccHHHHHHHHHCCC
Q 027067 37 GALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 37 e~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.+++|+||+|||||||.+.|++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999998754
No 271
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.30 E-value=0.00028 Score=55.45 Aligned_cols=36 Identities=31% Similarity=0.543 Sum_probs=26.4
Q ss_pred EEEEEcCCCccHHHHHHHHH-CC----CCCCcc----EEEEcCEe
Q 027067 38 ALVLTGTNGSGKSTFLRMLA-GF----SKPSAG----EILWNGHD 73 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~-Gl----~~p~~G----~I~~~g~~ 73 (229)
.++|+|++|+|||||++.+. +. ..|+.| .+.++|..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence 58999999999999996554 44 456666 56666644
No 272
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.28 E-value=2.9e-05 Score=62.33 Aligned_cols=26 Identities=27% Similarity=0.597 Sum_probs=22.9
Q ss_pred EEEEEcCCCccHHHHHHHHHCCCCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFSKPS 63 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~~p~ 63 (229)
+++|.|++||||||+++.|+..+.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999876543
No 273
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.28 E-value=0.00014 Score=57.56 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
+++|+|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999843
No 274
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=97.27 E-value=0.0014 Score=59.94 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=23.6
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHC
Q 027067 32 SIHDGGALVLTGTNGSGKSTFLRMLAG 58 (229)
Q Consensus 32 ~i~~Ge~~~iiG~NGsGKSTLl~~i~G 58 (229)
-+.+|+++.|.|++|+|||||+.-++-
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 488999999999999999999765553
No 275
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.27 E-value=0.00087 Score=58.33 Aligned_cols=27 Identities=33% Similarity=0.549 Sum_probs=21.8
Q ss_pred EeCCcEEEEEcCCCccHHHHH-HHHHCCC
Q 027067 33 IHDGGALVLTGTNGSGKSTFL-RMLAGFS 60 (229)
Q Consensus 33 i~~Ge~~~iiG~NGsGKSTLl-~~i~Gl~ 60 (229)
+.+| ++-|.||.|||||||+ .+++...
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~ 53 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYM 53 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHH
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHH
Confidence 6788 9999999999999994 5555443
No 276
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.26 E-value=0.00013 Score=57.01 Aligned_cols=23 Identities=48% Similarity=0.527 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
+++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998654
No 277
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.25 E-value=0.00018 Score=57.15 Aligned_cols=26 Identities=27% Similarity=0.320 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067 35 DGGALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
+|.+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999876
No 278
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.24 E-value=0.00018 Score=56.45 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067 35 DGGALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.+.++.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999997543
No 279
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.24 E-value=0.00015 Score=56.76 Aligned_cols=25 Identities=40% Similarity=0.430 Sum_probs=22.5
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHC
Q 027067 34 HDGGALVLTGTNGSGKSTFLRMLAG 58 (229)
Q Consensus 34 ~~Ge~~~iiG~NGsGKSTLl~~i~G 58 (229)
.++.++.|+|++||||||+.+.|+-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 4678899999999999999999983
No 280
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.24 E-value=0.00015 Score=58.14 Aligned_cols=22 Identities=41% Similarity=0.673 Sum_probs=19.1
Q ss_pred EEEEcCCCccHHHHHHHHHCCC
Q 027067 39 LVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 39 ~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
+.|+||||||||||++.|....
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6899999999999999886543
No 281
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.21 E-value=0.00019 Score=55.64 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=20.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHC
Q 027067 37 GALVLTGTNGSGKSTFLRMLAG 58 (229)
Q Consensus 37 e~~~iiG~NGsGKSTLl~~i~G 58 (229)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 282
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.21 E-value=0.0027 Score=57.53 Aligned_cols=35 Identities=26% Similarity=0.332 Sum_probs=27.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEE
Q 027067 35 DGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW 69 (229)
Q Consensus 35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~ 69 (229)
++.+++++|++|+||||++..|+..+....-+|.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 46899999999999999999998776544334444
No 283
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.20 E-value=0.00021 Score=56.88 Aligned_cols=27 Identities=30% Similarity=0.537 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067 35 DGGALVLTGTNGSGKSTFLRMLAGFSK 61 (229)
Q Consensus 35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~~ 61 (229)
+|.+++|.|+.||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 577899999999999999999987554
No 284
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.18 E-value=0.00021 Score=57.10 Aligned_cols=26 Identities=35% Similarity=0.575 Sum_probs=23.3
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHCC
Q 027067 34 HDGGALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.+|.+++|+|+.||||||+.+.|+..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999853
No 285
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.18 E-value=0.00021 Score=55.90 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHCCC
Q 027067 37 GALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 37 e~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
=.++|+|++|+|||||++.+.+-.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~~ 40 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASED 40 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999863
No 286
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.17 E-value=0.00019 Score=60.25 Aligned_cols=41 Identities=24% Similarity=0.217 Sum_probs=29.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhh
Q 027067 165 PSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAM 205 (229)
Q Consensus 165 Pt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~ 205 (229)
|||+.+..+...+.+.+..... ...+..+.+|..+.++.++
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~e~~~ 185 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIEREI 185 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCHHHHHHH
Confidence 9999999987777776666543 3445567788887777765
No 287
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.16 E-value=0.00023 Score=56.10 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=23.0
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHCC
Q 027067 34 HDGGALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.++.+++|+|+.||||||+.+.|+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999854
No 288
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.16 E-value=0.00019 Score=61.28 Aligned_cols=37 Identities=22% Similarity=0.371 Sum_probs=29.0
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcC
Q 027067 33 IHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNG 71 (229)
Q Consensus 33 i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g 71 (229)
-..|.++.|.||+||||||+.+.|+.-++ .|.+.++.
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 34578999999999999999999986543 35566654
No 289
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.14 E-value=0.00025 Score=55.58 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=21.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHCC
Q 027067 35 DGGALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
++.+++|+|+.||||||+.+.|+..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999998753
No 290
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.14 E-value=0.0013 Score=68.38 Aligned_cols=35 Identities=17% Similarity=0.241 Sum_probs=28.9
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEE
Q 027067 33 IHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEI 67 (229)
Q Consensus 33 i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I 67 (229)
+++|+++.|.||+|+|||||+..++.......|.+
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~V 763 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTC 763 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCe
Confidence 89999999999999999999998877654333444
No 291
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.13 E-value=0.00025 Score=56.75 Aligned_cols=26 Identities=38% Similarity=0.505 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHCC
Q 027067 34 HDGGALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.+|.+++|+|+.||||||+.+.|+-.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 56889999999999999999999853
No 292
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.08 E-value=0.00068 Score=51.37 Aligned_cols=41 Identities=10% Similarity=0.107 Sum_probs=29.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q 027067 156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHL 197 (229)
Q Consensus 156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~ 197 (229)
+..+|++||. ..++...+..+.+.+.+....+..+|.+|+.
T Consensus 75 ~~~~l~lDei-~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 75 EGGVLYVGDI-AQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp TTSEEEEEEC-TTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred CCCeEEEeCh-HHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 4578999996 4678877778888877654345667777763
No 293
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.07 E-value=0.00029 Score=55.17 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
+++|.|+.||||||+.+.|+..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998754
No 294
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=97.06 E-value=0.00044 Score=59.96 Aligned_cols=47 Identities=26% Similarity=0.246 Sum_probs=36.6
Q ss_pred CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHC----CCCCCccEEEE
Q 027067 22 AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAG----FSKPSAGEILW 69 (229)
Q Consensus 22 ~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~G----l~~p~~G~I~~ 69 (229)
....+++..+.+ .|.-++|+|+||+|||||...+.+ ++..+...|..
T Consensus 131 ~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~ 181 (314)
T 1ko7_A 131 RTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIRE 181 (314)
T ss_dssp EEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEE
T ss_pred cceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEE
Confidence 456788888888 789999999999999999998887 34334444444
No 295
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.06 E-value=0.00032 Score=55.82 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998754
No 296
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.05 E-value=0.00022 Score=58.63 Aligned_cols=25 Identities=24% Similarity=0.531 Sum_probs=21.9
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHH
Q 027067 33 IHDGGALVLTGTNGSGKSTFLRMLA 57 (229)
Q Consensus 33 i~~Ge~~~iiG~NGsGKSTLl~~i~ 57 (229)
+.+|+.+++.||+||||||++.++.
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHH
Confidence 4579999999999999999887664
No 297
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.04 E-value=0.00024 Score=55.49 Aligned_cols=26 Identities=19% Similarity=0.195 Sum_probs=18.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067 35 DGGALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 56799999999999999999998543
No 298
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.04 E-value=0.00034 Score=55.17 Aligned_cols=23 Identities=39% Similarity=0.678 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
+++|.|+.||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998654
No 299
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.03 E-value=0.0033 Score=55.47 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067 35 DGGALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
++.-+.|.||.|+|||+|.++++...
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh
Confidence 45789999999999999999998653
No 300
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.02 E-value=0.00038 Score=55.00 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=22.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHCCCC
Q 027067 37 GALVLTGTNGSGKSTFLRMLAGFSK 61 (229)
Q Consensus 37 e~~~iiG~NGsGKSTLl~~i~Gl~~ 61 (229)
.+++|+|++|||||||+..|++.++
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 4799999999999999999988754
No 301
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.00 E-value=0.001 Score=57.55 Aligned_cols=44 Identities=20% Similarity=0.224 Sum_probs=30.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhH
Q 027067 156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQI 201 (229)
Q Consensus 156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~ 201 (229)
++.++++||. -.|+......+.+.+.+. ..+..+|++|++...+
T Consensus 119 ~~~vliiDe~-~~l~~~~~~~Ll~~le~~-~~~~~~Il~~~~~~~l 162 (373)
T 1jr3_A 119 RFKVYLIDEV-HMLSRHSFNALLKTLEEP-PEHVKFLLATTDPQKL 162 (373)
T ss_dssp SSEEEEEECG-GGSCHHHHHHHHHHHHSC-CSSEEEEEEESCGGGS
T ss_pred CeEEEEEECc-chhcHHHHHHHHHHHhcC-CCceEEEEEeCChHhC
Confidence 5789999995 457777666666666442 2356788888876543
No 302
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.98 E-value=0.00042 Score=54.70 Aligned_cols=27 Identities=26% Similarity=0.266 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067 34 HDGGALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
..+.+++|+|+.||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 457799999999999999999997643
No 303
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.96 E-value=0.0027 Score=57.41 Aligned_cols=33 Identities=15% Similarity=0.224 Sum_probs=26.0
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHC
Q 027067 26 LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAG 58 (229)
Q Consensus 26 L~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~G 58 (229)
|+.+.--+.+|+++.|.|+.|+|||||+--++.
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 333333588999999999999999999866554
No 304
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.96 E-value=0.00038 Score=54.48 Aligned_cols=25 Identities=28% Similarity=0.530 Sum_probs=22.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHCCCC
Q 027067 37 GALVLTGTNGSGKSTFLRMLAGFSK 61 (229)
Q Consensus 37 e~~~iiG~NGsGKSTLl~~i~Gl~~ 61 (229)
=.++|+|+.|||||||++.+++-..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3789999999999999999998653
No 305
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.94 E-value=0.00053 Score=55.51 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067 35 DGGALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
+|-+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999997643
No 306
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.93 E-value=0.00048 Score=56.07 Aligned_cols=26 Identities=27% Similarity=0.258 Sum_probs=21.9
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHCC
Q 027067 34 HDGGALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.++.+++|+|+.||||||+.+.|+..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999854
No 307
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.92 E-value=0.0005 Score=58.21 Aligned_cols=23 Identities=26% Similarity=0.664 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++|+|++|||||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
No 308
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.91 E-value=0.0082 Score=53.69 Aligned_cols=56 Identities=18% Similarity=0.103 Sum_probs=38.0
Q ss_pred HHHHhcCCCeEEEeCCCCCC----------CHHHHHHHHHHHHHHH----hCCcEEEEEeCChhhHHhhh
Q 027067 150 ARLLAIDRPIWLLDEPSVAL----------DYDGVRLLEYIIAEHR----KKGGIVIVATHLPIQIEDAM 205 (229)
Q Consensus 150 Aral~~~p~illlDEPt~~L----------D~~~~~~l~~~l~~~~----~~g~tii~vtH~~~~~~~~~ 205 (229)
..|-...|.|+++||--+-. |......+..+|..+. ..+..||.+|+.++.+..++
T Consensus 235 ~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAl 304 (405)
T 4b4t_J 235 VMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPAL 304 (405)
T ss_dssp HHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHH
T ss_pred HHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhH
Confidence 34445679999999965432 2334456667776653 22457899999998888876
No 309
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.90 E-value=0.00054 Score=53.71 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998643
No 310
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.90 E-value=0.00054 Score=52.37 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++|+|+.|+|||||++.+.|-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47999999999999999999864
No 311
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.89 E-value=0.00054 Score=55.08 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHHCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.++|+|+.||||||+.+.|+.-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999643
No 312
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.89 E-value=0.00056 Score=51.97 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999984
No 313
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.88 E-value=0.00043 Score=52.55 Aligned_cols=24 Identities=33% Similarity=0.671 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHCCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFSK 61 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~~ 61 (229)
.++|+|+.|+|||||++.+.|...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 478999999999999999988643
No 314
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.88 E-value=0.00062 Score=52.57 Aligned_cols=24 Identities=42% Similarity=0.391 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHCC
Q 027067 36 GGALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 36 Ge~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
=++++|+|+.||||||+.+.|+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999753
No 315
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.87 E-value=0.00066 Score=54.04 Aligned_cols=25 Identities=32% Similarity=0.303 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHCC
Q 027067 35 DGGALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.+-+++|+|+.||||||+.+.|+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999754
No 316
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.87 E-value=0.00096 Score=54.23 Aligned_cols=39 Identities=26% Similarity=0.321 Sum_probs=30.9
Q ss_pred CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067 21 NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 21 ~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.....++..-+.+ .|..+.|+||+|||||||...|+.-.
T Consensus 20 a~~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 20 AERRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp -CCCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CcceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3455677777776 57899999999999999999987643
No 317
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.87 E-value=0.00049 Score=53.14 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHCC
Q 027067 37 GALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 37 e~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.+++|+|+.||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999764
No 318
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.87 E-value=0.00046 Score=52.32 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++|+|+.|+|||||++.+.+-.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
No 319
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.86 E-value=0.00064 Score=52.28 Aligned_cols=22 Identities=36% Similarity=0.320 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
+++|+|+.||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999763
No 320
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.85 E-value=0.00061 Score=54.23 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHCC
Q 027067 35 DGGALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
+..+++|+|+.||||||+.+.|+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999854
No 321
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.85 E-value=0.00061 Score=51.87 Aligned_cols=23 Identities=35% Similarity=0.652 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++|+|+.|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 37899999999999999998754
No 322
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.85 E-value=0.0006 Score=53.30 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHHCC
Q 027067 36 GGALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 36 Ge~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
..+++|+|+.||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999753
No 323
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.84 E-value=0.00055 Score=52.57 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++|+|+.|+|||||++.+.+-.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 324
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.84 E-value=0.0014 Score=59.98 Aligned_cols=28 Identities=25% Similarity=0.447 Sum_probs=23.4
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067 33 IHDGGALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 33 i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
+.+..-+.|.||+|+|||+|.++|+...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 3455679999999999999999998753
No 325
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.83 E-value=0.00052 Score=55.61 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHCC
Q 027067 35 DGGALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.+.++.|+|+.||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999754
No 326
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.83 E-value=0.00048 Score=51.83 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++++|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999998653
No 327
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.82 E-value=0.00059 Score=51.41 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++++|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 328
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.82 E-value=0.00083 Score=51.55 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHCC
Q 027067 35 DGGALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999999874
No 329
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.82 E-value=0.00066 Score=54.61 Aligned_cols=22 Identities=36% Similarity=0.392 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHHCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.++|+|+.||||||+.+.|+.-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999753
No 330
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.81 E-value=0.00057 Score=51.57 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHHCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999998754
No 331
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.81 E-value=0.00056 Score=53.55 Aligned_cols=23 Identities=52% Similarity=0.501 Sum_probs=20.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHCC
Q 027067 37 GALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 37 e~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.+++|+|+.||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999753
No 332
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.80 E-value=0.00056 Score=51.66 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.++++|+.|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 333
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.80 E-value=0.00063 Score=53.22 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=21.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHCCC
Q 027067 37 GALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 37 e~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
-.++|+|+.|+|||||++.+.+-.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999863
No 334
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.80 E-value=0.00058 Score=51.86 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++|+|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998764
No 335
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.79 E-value=0.00065 Score=52.88 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68999999999999999999874
No 336
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.79 E-value=0.00077 Score=56.32 Aligned_cols=25 Identities=48% Similarity=0.589 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHCC
Q 027067 35 DGGALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
++.++.|+|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
No 337
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.78 E-value=0.0006 Score=51.85 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4799999999999999999865
No 338
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.77 E-value=0.00061 Score=51.64 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++++|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998654
No 339
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.77 E-value=0.00078 Score=55.91 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=21.7
Q ss_pred EEEEEcCCCccHHHHHHHHHCCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFSK 61 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~~ 61 (229)
.++|+|.+|+|||||++.|.|-..
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 579999999999999999999654
No 340
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.77 E-value=0.00062 Score=52.28 Aligned_cols=23 Identities=17% Similarity=0.460 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++|+|+.|||||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999888754
No 341
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.76 E-value=0.00075 Score=55.97 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=21.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHCCC
Q 027067 37 GALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 37 e~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
-+++|.|+.||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999997743
No 342
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.76 E-value=0.00066 Score=52.69 Aligned_cols=23 Identities=30% Similarity=0.574 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++|+|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 37899999999999999999864
No 343
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.76 E-value=0.00064 Score=51.47 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 344
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.75 E-value=0.00058 Score=51.85 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47899999999999999998754
No 345
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.75 E-value=0.00065 Score=52.10 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998653
No 346
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.74 E-value=0.011 Score=53.88 Aligned_cols=60 Identities=20% Similarity=0.166 Sum_probs=39.7
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCC----------CHHHHHHHHHHHHHHH----hCCcEEEEEeCChhhHHhhh
Q 027067 146 RLQLARLLAIDRPIWLLDEPSVAL----------DYDGVRLLEYIIAEHR----KKGGIVIVATHLPIQIEDAM 205 (229)
Q Consensus 146 Rv~lAral~~~p~illlDEPt~~L----------D~~~~~~l~~~l~~~~----~~g~tii~vtH~~~~~~~~~ 205 (229)
|-.+..|-...|-|+++||--+-. +......+..+|.++. ..+..||.+|+.++.+..++
T Consensus 292 r~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpAL 365 (467)
T 4b4t_H 292 RELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPAL 365 (467)
T ss_dssp HHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHH
T ss_pred HHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhh
Confidence 334455556779999999986543 2233445666666653 22457888999998888876
No 347
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.74 E-value=0.00084 Score=53.92 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHCC
Q 027067 36 GGALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 36 Ge~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.-+++|+|+.||||||+.+.++..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999864
No 348
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.74 E-value=0.0089 Score=62.14 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=23.7
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHCC
Q 027067 33 IHDGGALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 33 i~~Ge~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
+++|.++.|.||.|+|||||..-++..
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLq~a~~ 406 (1706)
T 3cmw_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAA 406 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 789999999999999999998666543
No 349
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.73 E-value=0.00049 Score=53.24 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHHC
Q 027067 36 GGALVLTGTNGSGKSTFLRMLAG 58 (229)
Q Consensus 36 Ge~~~iiG~NGsGKSTLl~~i~G 58 (229)
.=.++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34789999999999999999874
No 350
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.73 E-value=0.00064 Score=52.18 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 351
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.70 E-value=0.012 Score=52.93 Aligned_cols=55 Identities=20% Similarity=0.190 Sum_probs=36.5
Q ss_pred HHHhcCCCeEEEeCCC----------CCCCHHHHHHHHHHHHHHH----hCCcEEEEEeCChhhHHhhh
Q 027067 151 RLLAIDRPIWLLDEPS----------VALDYDGVRLLEYIIAEHR----KKGGIVIVATHLPIQIEDAM 205 (229)
Q Consensus 151 ral~~~p~illlDEPt----------~~LD~~~~~~l~~~l~~~~----~~g~tii~vtH~~~~~~~~~ 205 (229)
.|-...|-|+++||-- ++-|......+..+|..+. ..+..||.+|+.++.+..++
T Consensus 260 ~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~Al 328 (428)
T 4b4t_K 260 LARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPAL 328 (428)
T ss_dssp HHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHH
T ss_pred HHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhh
Confidence 3444568899999852 2334444556666666653 23567999999998888776
No 352
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.69 E-value=0.00039 Score=59.42 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=19.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067 35 DGGALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
++-+++|.|++||||||+.+.|+..+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998643
No 353
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.67 E-value=0.00079 Score=52.48 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999863
No 354
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.67 E-value=0.00079 Score=52.10 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++|+|+.|+|||||++.+.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998653
No 355
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.67 E-value=0.00094 Score=51.23 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++|+|+.|+|||||++.+.+-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 47999999999999999998753
No 356
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.67 E-value=0.0008 Score=50.97 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999863
No 357
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.67 E-value=0.00098 Score=57.16 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++|+|.+|+|||||++.+.|-.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 69999999999999999999863
No 358
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.67 E-value=0.001 Score=54.20 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHHCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
+++|.|+.||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999753
No 359
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.66 E-value=0.0011 Score=54.97 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHC
Q 027067 35 DGGALVLTGTNGSGKSTFLRMLAG 58 (229)
Q Consensus 35 ~Ge~~~iiG~NGsGKSTLl~~i~G 58 (229)
++-+++|+|+.||||||+.+.|+-
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999974
No 360
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.66 E-value=0.0008 Score=52.70 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4799999999999999999874
No 361
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.65 E-value=0.00093 Score=56.65 Aligned_cols=23 Identities=43% Similarity=0.447 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHHC
Q 027067 36 GGALVLTGTNGSGKSTFLRMLAG 58 (229)
Q Consensus 36 Ge~~~iiG~NGsGKSTLl~~i~G 58 (229)
.-+++|+|+.||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999983
No 362
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.65 E-value=0.00082 Score=52.09 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999864
No 363
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.64 E-value=0.00094 Score=50.80 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999763
No 364
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.63 E-value=0.00093 Score=52.02 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=21.9
Q ss_pred EEEEEcCCCccHHHHHHHHHCCCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFSKP 62 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~~p 62 (229)
.++|+|+.|+|||||++.+.|....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 4789999999999999999987543
No 365
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.63 E-value=0.00083 Score=56.47 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++|+|++|+|||||++.|.|-.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998764
No 366
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.62 E-value=0.00091 Score=50.60 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=19.0
Q ss_pred EEEEEcCCCccHHHHHHHHHC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAG 58 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~G 58 (229)
.++++|+.|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 378999999999999999975
No 367
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.62 E-value=0.0011 Score=55.56 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++|+|..|||||||++.+.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999974
No 368
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.61 E-value=0.00085 Score=51.36 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999854
No 369
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.61 E-value=0.0013 Score=55.41 Aligned_cols=30 Identities=30% Similarity=0.520 Sum_probs=23.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHCCCCCCccE
Q 027067 37 GALVLTGTNGSGKSTFLRMLAGFSKPSAGE 66 (229)
Q Consensus 37 e~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~ 66 (229)
-.++++|.+|+|||||++.|.|-.....|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 489999999999999999999987654443
No 370
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.60 E-value=0.0014 Score=50.55 Aligned_cols=27 Identities=30% Similarity=0.338 Sum_probs=23.0
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067 34 HDGGALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
..+..+.|.||.|+|||||++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998764
No 371
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.60 E-value=0.0012 Score=56.76 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=21.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHCCC
Q 027067 37 GALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 37 e~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.+++|+|..|+|||||++.+.|-.
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 389999999999999999999963
No 372
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.60 E-value=0.00093 Score=51.50 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 4899999999999999999864
No 373
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.60 E-value=0.00095 Score=51.08 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
No 374
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.59 E-value=0.00095 Score=52.05 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.++++|+.|+|||||++.+++-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999865
No 375
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.59 E-value=0.0022 Score=51.02 Aligned_cols=35 Identities=26% Similarity=0.285 Sum_probs=27.8
Q ss_pred eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHC
Q 027067 23 QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAG 58 (229)
Q Consensus 23 ~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~G 58 (229)
+..++..-+.+ .|.-+.|.|++|+|||||...+..
T Consensus 4 ~~~lHas~v~v-~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 4 KQTWHANFLVI-DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp CEEEESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred cEEEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 44566666665 588999999999999999887754
No 376
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.58 E-value=0.00046 Score=62.99 Aligned_cols=44 Identities=23% Similarity=0.358 Sum_probs=33.3
Q ss_pred eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEE
Q 027067 24 QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEIL 68 (229)
Q Consensus 24 ~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~ 68 (229)
++++.+ +.+-+|+..+|+|++|+|||||++.|++......+.|.
T Consensus 140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~ 183 (473)
T 1sky_E 140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGIS 183 (473)
T ss_dssp HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCE
T ss_pred hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEE
Confidence 345554 57778999999999999999999999876543334443
No 377
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.58 E-value=0.00099 Score=51.20 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++|+|+.|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998653
No 378
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.57 E-value=0.00094 Score=52.94 Aligned_cols=22 Identities=36% Similarity=0.679 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.++|+|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999764
No 379
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.56 E-value=0.0013 Score=54.57 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++|+|+.|||||||++.|.|-.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 380
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.55 E-value=0.008 Score=63.36 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=24.5
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067 33 IHDGGALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 33 i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
+++|+++.|.||+|+|||||+..++...
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~ 407 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAA 407 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 8899999999999999999987766543
No 381
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.54 E-value=0.0011 Score=50.98 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++|+|+.|+|||||++.+.+-.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
No 382
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.54 E-value=0.0014 Score=50.93 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067 35 DGGALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
+.=.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999998754
No 383
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.54 E-value=0.0066 Score=51.76 Aligned_cols=44 Identities=14% Similarity=0.125 Sum_probs=31.4
Q ss_pred CCCeEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCcEEEEEeCChhhH
Q 027067 156 DRPIWLLDEPSVALD-YDGVRLLEYIIAEHRKKGGIVIVATHLPIQI 201 (229)
Q Consensus 156 ~p~illlDEPt~~LD-~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~ 201 (229)
+++++++||.-. +. ......+...+.... .+..+|++|++...+
T Consensus 105 ~~~vliiDEi~~-l~~~~~~~~L~~~le~~~-~~~~iI~~~n~~~~l 149 (324)
T 3u61_B 105 RQKVIVIDEFDR-SGLAESQRHLRSFMEAYS-SNCSIIITANNIDGI 149 (324)
T ss_dssp CEEEEEEESCCC-GGGHHHHHHHHHHHHHHG-GGCEEEEEESSGGGS
T ss_pred CCeEEEEECCcc-cCcHHHHHHHHHHHHhCC-CCcEEEEEeCCcccc
Confidence 789999999843 44 556667777776653 356788888886643
No 384
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.54 E-value=0.00098 Score=58.98 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.++|+|++|+|||||++.|+|.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3799999999999999999985
No 385
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.53 E-value=0.00076 Score=54.09 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=21.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHCCC
Q 027067 37 GALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 37 e~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
-.++|+|+.|+|||||++.+.|-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999874
No 386
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.53 E-value=0.0015 Score=53.23 Aligned_cols=28 Identities=36% Similarity=0.374 Sum_probs=24.4
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067 34 HDGGALVLTGTNGSGKSTFLRMLAGFSK 61 (229)
Q Consensus 34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~ 61 (229)
.+|.+++|.|+.||||||+++.|+..+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999977654
No 387
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.53 E-value=0.001 Score=51.52 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999864
No 388
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.53 E-value=0.0012 Score=52.81 Aligned_cols=23 Identities=30% Similarity=0.624 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++|+|+.|+|||||++.+.+-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998865
No 389
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.52 E-value=0.0015 Score=52.91 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067 35 DGGALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
+|-+++|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999997643
No 390
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.52 E-value=0.0011 Score=52.14 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999864
No 391
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.52 E-value=0.0013 Score=52.91 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHHCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.++|+|+.||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999753
No 392
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.51 E-value=0.0012 Score=52.16 Aligned_cols=23 Identities=17% Similarity=0.483 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 393
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.49 E-value=0.0016 Score=54.51 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++|+|+.|||||||++.++|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
No 394
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.49 E-value=0.0015 Score=55.24 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=20.2
Q ss_pred cEEEEEcCCCccHHHHHHHHHC
Q 027067 37 GALVLTGTNGSGKSTFLRMLAG 58 (229)
Q Consensus 37 e~~~iiG~NGsGKSTLl~~i~G 58 (229)
.++.|+|++||||||+.+.|+-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 395
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.49 E-value=0.0012 Score=51.53 Aligned_cols=23 Identities=39% Similarity=0.537 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++|+|+.|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
No 396
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.49 E-value=0.0012 Score=51.53 Aligned_cols=23 Identities=39% Similarity=0.512 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++|+|+.|+|||||++.+.+-.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
No 397
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.48 E-value=0.0011 Score=51.81 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999873
No 398
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.48 E-value=0.0015 Score=51.48 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998764
No 399
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.48 E-value=0.0015 Score=55.11 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=21.2
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++|+|..|||||||++.++|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
No 400
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.48 E-value=0.0011 Score=51.54 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 401
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.48 E-value=0.0063 Score=56.74 Aligned_cols=42 Identities=26% Similarity=0.369 Sum_probs=31.6
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHHC-C---CCCCccEEEE
Q 027067 28 HVNISIHDGGALVLTGTNGSGKSTFLRMLAG-F---SKPSAGEILW 69 (229)
Q Consensus 28 ~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~G-l---~~p~~G~I~~ 69 (229)
.+.+++.++-.+.|.|.+|||||++++.|.- + ..|..-++++
T Consensus 206 pv~~DL~k~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lil 251 (574)
T 2iut_A 206 PIITDLAKMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIM 251 (574)
T ss_dssp EEEEEGGGSCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEE
T ss_pred EEEEEhhhCCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEE
Confidence 4566677788999999999999999997543 3 4566655554
No 402
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.48 E-value=0.0013 Score=51.65 Aligned_cols=23 Identities=17% Similarity=0.535 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++|+|+.|+|||||++.+.+-.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 403
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.47 E-value=0.003 Score=48.63 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHHC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAG 58 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~G 58 (229)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 578999999999999999983
No 404
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.46 E-value=0.0012 Score=51.87 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998653
No 405
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.46 E-value=0.0017 Score=53.96 Aligned_cols=27 Identities=26% Similarity=0.476 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067 35 DGGALVLTGTNGSGKSTFLRMLAGFSK 61 (229)
Q Consensus 35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~~ 61 (229)
+|.+++|.|++||||||+++.|+..+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999987654
No 406
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.46 E-value=0.0014 Score=50.60 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998864
No 407
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.46 E-value=0.0015 Score=55.54 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=21.7
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++|+|+.|||||||++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999975
No 408
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.45 E-value=0.0015 Score=51.77 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998753
No 409
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.45 E-value=0.0013 Score=50.65 Aligned_cols=22 Identities=23% Similarity=0.293 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHHCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999998753
No 410
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.44 E-value=0.0013 Score=52.66 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=21.2
Q ss_pred cEEEEEcCCCccHHHHHHHHHCCC
Q 027067 37 GALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 37 e~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
-.++|+|+.|+|||||++.+++-.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999988753
No 411
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.44 E-value=0.0017 Score=50.56 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=20.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHCC
Q 027067 37 GALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 37 e~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
=.++|+|+.|+|||||++.+.+-
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999964
No 412
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.44 E-value=0.0013 Score=54.27 Aligned_cols=28 Identities=25% Similarity=0.474 Sum_probs=22.0
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067 34 HDGGALVLTGTNGSGKSTFLRMLAGFSK 61 (229)
Q Consensus 34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~ 61 (229)
.+|.+++|.|+.||||||+.+.|+..+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999987654
No 413
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.44 E-value=0.003 Score=61.49 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=23.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHCCCCC
Q 027067 37 GALVLTGTNGSGKSTFLRMLAGFSKP 62 (229)
Q Consensus 37 e~~~iiG~NGsGKSTLl~~i~Gl~~p 62 (229)
..+.|.||+|+|||++.+.|+.....
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 47899999999999999999987654
No 414
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.43 E-value=0.0012 Score=51.51 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998764
No 415
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.42 E-value=0.0017 Score=50.78 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999885
No 416
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.41 E-value=0.0017 Score=52.54 Aligned_cols=23 Identities=26% Similarity=0.613 Sum_probs=21.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHCC
Q 027067 37 GALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 37 e~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
-.++|+|+.|+|||||++.+.+-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999885
No 417
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.41 E-value=0.0017 Score=56.86 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=22.2
Q ss_pred cEEEEEcCCCccHHHHHHHHHCCCC
Q 027067 37 GALVLTGTNGSGKSTFLRMLAGFSK 61 (229)
Q Consensus 37 e~~~iiG~NGsGKSTLl~~i~Gl~~ 61 (229)
.+++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4899999999999999999987654
No 418
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.41 E-value=0.0017 Score=58.17 Aligned_cols=26 Identities=31% Similarity=0.368 Sum_probs=23.0
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHCC
Q 027067 34 HDGGALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.+..++.|+|++||||||+.+.|+.-
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999999998753
No 419
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.41 E-value=0.0015 Score=51.05 Aligned_cols=22 Identities=14% Similarity=0.295 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999854
No 420
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.41 E-value=0.0019 Score=52.67 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067 35 DGGALVLTGTNGSGKSTFLRMLAGFSK 61 (229)
Q Consensus 35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~~ 61 (229)
+|.++++-|+.||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987664
No 421
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.40 E-value=0.0013 Score=52.00 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++|+|+.|+|||||++.+.+-.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 68999999999999999998754
No 422
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.40 E-value=0.0021 Score=52.53 Aligned_cols=26 Identities=38% Similarity=0.355 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067 35 DGGALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.+..+.|+|+.||||||+.+.|+-.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998643
No 423
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.40 E-value=0.00047 Score=57.10 Aligned_cols=44 Identities=18% Similarity=-0.025 Sum_probs=28.4
Q ss_pred HhcCCCeEEEeCCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEEeC
Q 027067 153 LAIDRPIWLLDEPSVA-LDYDGVRLLEYIIAEHRKKGGIVIVATH 196 (229)
Q Consensus 153 l~~~p~illlDEPt~~-LD~~~~~~l~~~l~~~~~~g~tii~vtH 196 (229)
+..+|+++|+||+-.- .+......+++.+......|..++.++|
T Consensus 81 L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 81 LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 4468999999998642 3432223334444445567888998888
No 424
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.40 E-value=0.0015 Score=51.18 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998653
No 425
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.39 E-value=0.0017 Score=52.18 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHCCC
Q 027067 36 GGALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 36 Ge~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
+-+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998754
No 426
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.38 E-value=0.0017 Score=51.36 Aligned_cols=22 Identities=45% Similarity=0.758 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999863
No 427
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.38 E-value=0.002 Score=52.93 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067 35 DGGALVLTGTNGSGKSTFLRMLAGFSK 61 (229)
Q Consensus 35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~~ 61 (229)
+|.+++|.|+.||||||+.+.|+..++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999987653
No 428
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.38 E-value=0.0016 Score=50.48 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999753
No 429
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.38 E-value=0.002 Score=50.82 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.5
Q ss_pred EEEEEcCCCccHHHHHHHHHCCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFSK 61 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~~ 61 (229)
.++|+|+.|+|||||++.+.|-..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 589999999999999999999654
No 430
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.38 E-value=0.0014 Score=51.31 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 57999999999999999998754
No 431
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.37 E-value=0.002 Score=51.47 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHCCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFSK 61 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~~ 61 (229)
.++|+|+.|+|||||++.+.+-..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~~ 50 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNKF 50 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 479999999999999999998643
No 432
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.37 E-value=0.0016 Score=50.11 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998643
No 433
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.36 E-value=0.0018 Score=49.89 Aligned_cols=27 Identities=26% Similarity=0.255 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067 35 DGGALVLTGTNGSGKSTFLRMLAGFSK 61 (229)
Q Consensus 35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~~ 61 (229)
.+..+.|.||.|+|||||++.++....
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 456789999999999999999987653
No 434
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.36 E-value=0.0014 Score=52.28 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHHCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999988754
No 435
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.35 E-value=0.0022 Score=55.68 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHCCC
Q 027067 36 GGALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 36 Ge~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
+.+++|+||+|||||||...|+--+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 5689999999999999999998655
No 436
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.35 E-value=0.0016 Score=51.03 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 437
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.35 E-value=0.002 Score=50.64 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=20.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHCCC
Q 027067 37 GALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 37 e~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
=.++|+|+.|+|||||++.+.+-.
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC--
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 368999999999999999998753
No 438
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.34 E-value=0.0017 Score=51.09 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999865
No 439
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.34 E-value=0.0017 Score=50.85 Aligned_cols=22 Identities=41% Similarity=0.563 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 440
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.33 E-value=0.0017 Score=50.52 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 441
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.33 E-value=0.0019 Score=51.71 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 442
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.33 E-value=0.0017 Score=51.45 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=20.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHCCC
Q 027067 37 GALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 37 e~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
=.++|+|+.|+|||||++.+.+-.
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 368999999999999999998653
No 443
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.33 E-value=0.0017 Score=51.24 Aligned_cols=24 Identities=38% Similarity=0.470 Sum_probs=21.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHCCC
Q 027067 37 GALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 37 e~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
=.++|+|+.|+|||||++.+.+-.
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 368999999999999999998754
No 444
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.32 E-value=0.0016 Score=51.62 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998653
No 445
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.32 E-value=0.0024 Score=52.60 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=24.8
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067 34 HDGGALVLTGTNGSGKSTFLRMLAGFSK 61 (229)
Q Consensus 34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~ 61 (229)
.+|.+++|.|+.||||||+.+.|+..+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999987654
No 446
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.31 E-value=0.0023 Score=56.00 Aligned_cols=27 Identities=37% Similarity=0.417 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067 35 DGGALVLTGTNGSGKSTFLRMLAGFSK 61 (229)
Q Consensus 35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~~ 61 (229)
++.+++|+||.|||||||...|+.-+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 567999999999999999999998663
No 447
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.30 E-value=0.0024 Score=52.33 Aligned_cols=33 Identities=21% Similarity=0.370 Sum_probs=27.7
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEE
Q 027067 34 HDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEI 67 (229)
Q Consensus 34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I 67 (229)
.+|.++.+-|+.||||||+.+.|+-.+.. .+.+
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~-~~~~ 35 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP-NCKL 35 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS-SEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc-cceE
Confidence 36899999999999999999999987765 4443
No 448
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.30 E-value=0.0014 Score=50.37 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.++++|+.|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999998864
No 449
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.27 E-value=0.0021 Score=54.08 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=22.0
Q ss_pred EEEEEcCCCccHHHHHHHHHCCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFSK 61 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~~ 61 (229)
.++|+|..|+|||||++.|.|..-
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCCc
Confidence 799999999999999999999753
No 450
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.27 E-value=0.0018 Score=51.56 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998753
No 451
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=96.26 E-value=0.0024 Score=53.28 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++|+|..|+|||||++.+.|-.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999864
No 452
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=96.26 E-value=0.0023 Score=53.51 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++++|+.|+|||||++.+.|-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999865
No 453
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.24 E-value=0.0018 Score=51.75 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++|+|+.|+|||||++.+.+-.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998763
No 454
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.23 E-value=0.0025 Score=55.39 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=21.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHCCC
Q 027067 37 GALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 37 e~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.+++|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999765
No 455
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.23 E-value=0.0014 Score=50.65 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=9.2
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEECCCCC-------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999988653
No 456
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.22 E-value=0.0021 Score=50.29 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHHCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 5899999999999999888754
No 457
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.22 E-value=0.0021 Score=50.65 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHCC
Q 027067 37 GALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 37 e~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
=.++|+|+.|+|||||++.+.+-
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSS
T ss_pred cEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999764
No 458
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.22 E-value=0.016 Score=61.17 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=24.2
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHC
Q 027067 33 IHDGGALVLTGTNGSGKSTFLRMLAG 58 (229)
Q Consensus 33 i~~Ge~~~iiG~NGsGKSTLl~~i~G 58 (229)
+++|+.+.|.||.|+|||||...++-
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ 1449 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIA 1449 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999999988754
No 459
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.17 E-value=0.0021 Score=50.88 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999874
No 460
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.17 E-value=0.0035 Score=49.87 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998654
No 461
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.17 E-value=0.0017 Score=54.06 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=24.4
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067 34 HDGGALVLTGTNGSGKSTFLRMLAGFSK 61 (229)
Q Consensus 34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~ 61 (229)
.++.+++|.|+.||||||+.+.|+..+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5788999999999999999999987663
No 462
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.16 E-value=0.0039 Score=50.59 Aligned_cols=25 Identities=36% Similarity=0.711 Sum_probs=22.1
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHH
Q 027067 32 SIHDGGALVLTGTNGSGKSTFLRML 56 (229)
Q Consensus 32 ~i~~Ge~~~iiG~NGsGKSTLl~~i 56 (229)
-+++|+++.|.|+.|+|||||+--+
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~ 50 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQF 50 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHH
Confidence 3789999999999999999997544
No 463
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.12 E-value=0.0024 Score=49.97 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999865
No 464
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.12 E-value=0.0024 Score=52.33 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=24.0
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHCC
Q 027067 32 SIHDGGALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 32 ~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.+.+..++.|+||.||||+|..+.|+--
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4567789999999999999999999843
No 465
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.11 E-value=0.0035 Score=50.76 Aligned_cols=22 Identities=45% Similarity=0.758 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999974
No 466
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.09 E-value=0.0036 Score=49.64 Aligned_cols=24 Identities=38% Similarity=0.383 Sum_probs=20.3
Q ss_pred CCcEEEEEcCCCccHHHHH-HHHHC
Q 027067 35 DGGALVLTGTNGSGKSTFL-RMLAG 58 (229)
Q Consensus 35 ~Ge~~~iiG~NGsGKSTLl-~~i~G 58 (229)
+|.++.+.||.||||||++ +.+..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999997 55543
No 467
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.08 E-value=0.011 Score=54.17 Aligned_cols=62 Identities=18% Similarity=0.188 Sum_probs=47.6
Q ss_pred hcCCCCCCChhHHHHHHHHHHH--hc---------------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEE
Q 027067 132 AKEKARMLSMGQRKRLQLARLL--AI---------------DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVA 194 (229)
Q Consensus 132 ~~~~~~~LSgGqkqRv~lAral--~~---------------~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~v 194 (229)
.++....+||||+|-.-+|.+. ++ .-.++++||. +-+|.+..+...++++.+ |.-+|++
T Consensus 373 ~s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliia 448 (483)
T 3euj_A 373 MRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIA 448 (483)
T ss_dssp EECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEE
T ss_pred eecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEE
Confidence 4556789999999965444433 22 2257999999 999999999888888765 7888898
Q ss_pred eCC
Q 027067 195 THL 197 (229)
Q Consensus 195 tH~ 197 (229)
|=+
T Consensus 449 tP~ 451 (483)
T 3euj_A 449 APE 451 (483)
T ss_dssp ESS
T ss_pred Ccc
Confidence 876
No 468
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=96.08 E-value=0.0013 Score=52.64 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++|+|+.|+|||||++.+.+-.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998653
No 469
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.07 E-value=0.0033 Score=50.54 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=20.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHCCC
Q 027067 37 GALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 37 e~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
-.++|+|..|+|||||++-+++-.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999998887653
No 470
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.04 E-value=0.0026 Score=57.54 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=21.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHCC
Q 027067 37 GALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 37 e~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
-.++|+|.+|+|||||++.|+|-
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 37999999999999999999883
No 471
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.02 E-value=0.0039 Score=53.96 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHCCC
Q 027067 36 GGALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 36 Ge~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
..+++|+||+|||||||...|+.-.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4589999999999999999998654
No 472
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.02 E-value=0.0041 Score=50.28 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067 36 GGALVLTGTNGSGKSTFLRMLAGFSK 61 (229)
Q Consensus 36 Ge~~~iiG~NGsGKSTLl~~i~Gl~~ 61 (229)
|.+++|=|+-||||||+++.|+..+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 57899999999999999999987664
No 473
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.02 E-value=0.002 Score=50.14 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=20.2
Q ss_pred cEEEEEcCCCccHHHHHHHHHCC
Q 027067 37 GALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 37 e~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
=.++|+|+.|+|||||++.+.+-
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999653
No 474
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=95.98 E-value=0.0013 Score=51.68 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=4.3
Q ss_pred EEEEEcCCCccHHHHHHHHHCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998875
No 475
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.97 E-value=0.003 Score=50.04 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++|+|+.|+|||||++.+.+-.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 48999999999999999997643
No 476
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.95 E-value=0.0034 Score=50.56 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++|+|+.|+|||||++.+.+-.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 477
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.89 E-value=0.0037 Score=49.65 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=19.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHC
Q 027067 37 GALVLTGTNGSGKSTFLRMLAG 58 (229)
Q Consensus 37 e~~~iiG~NGsGKSTLl~~i~G 58 (229)
=.++|+|+.|+|||||++.+.+
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 3689999999999999988874
No 478
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.88 E-value=0.0037 Score=50.17 Aligned_cols=22 Identities=41% Similarity=0.545 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999998764
No 479
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.84 E-value=0.0048 Score=48.55 Aligned_cols=45 Identities=24% Similarity=0.179 Sum_probs=31.0
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhH
Q 027067 155 IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQI 201 (229)
Q Consensus 155 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~ 201 (229)
.++.++++||. ..++......+..++... ..+..+|++|+....+
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~-~~~~~~i~~~~~~~~~ 145 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMY-SKSCRFILSCNYVSRI 145 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHT-TTTEEEEEEESCGGGS
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhc-CCCCeEEEEeCChhhc
Confidence 36889999994 556777677777776653 2356678888776543
No 480
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=95.81 E-value=0.0065 Score=51.55 Aligned_cols=29 Identities=28% Similarity=0.329 Sum_probs=23.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHCCCCCCcc
Q 027067 37 GALVLTGTNGSGKSTFLRMLAGFSKPSAG 65 (229)
Q Consensus 37 e~~~iiG~NGsGKSTLl~~i~Gl~~p~~G 65 (229)
-.++++|.+|+|||||++.|.|-.....|
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~~~~~~ 149 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKNIAKTG 149 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCC---
T ss_pred ceEEEEecCCCchHHHHHHHhcCceeecC
Confidence 36899999999999999999997644333
No 481
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.79 E-value=0.0039 Score=49.45 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998854
No 482
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.72 E-value=0.0057 Score=54.77 Aligned_cols=24 Identities=38% Similarity=0.440 Sum_probs=21.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHCCC
Q 027067 37 GALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 37 e~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.+++|+||+|||||||.+.|+--+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999988644
No 483
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.72 E-value=0.0062 Score=49.33 Aligned_cols=23 Identities=39% Similarity=0.468 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
++.|+||.||||+|..+.|+--+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998543
No 484
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.71 E-value=0.0062 Score=51.34 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067 35 DGGALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
++..+.|.||.|+|||||.+.++..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45579999999999999999888765
No 485
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.67 E-value=0.0018 Score=58.54 Aligned_cols=44 Identities=23% Similarity=0.315 Sum_probs=32.7
Q ss_pred EEEeCC--cEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeC
Q 027067 31 ISIHDG--GALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI 74 (229)
Q Consensus 31 l~i~~G--e~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~ 74 (229)
|.+.++ .+++|+|++|+||||++..|++.+.....+|.+-+.|.
T Consensus 92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 444434 59999999999999999999998764444566655444
No 486
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.64 E-value=0.049 Score=45.05 Aligned_cols=40 Identities=20% Similarity=0.107 Sum_probs=30.4
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhh
Q 027067 155 IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQ 200 (229)
Q Consensus 155 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~ 200 (229)
.+.+++++||---..| +.++++.+...|..||++-++.++
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF 128 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTF 128 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCT
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEeccccc
Confidence 6789999999877754 445555555678999999998653
No 487
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.63 E-value=0.0031 Score=57.05 Aligned_cols=40 Identities=23% Similarity=0.483 Sum_probs=30.0
Q ss_pred eeeeEEEeCCcE--EEEEcCCCccHHHHHHHHHCCCCCCccE
Q 027067 27 RHVNISIHDGGA--LVLTGTNGSGKSTFLRMLAGFSKPSAGE 66 (229)
Q Consensus 27 ~~vsl~i~~Ge~--~~iiG~NGsGKSTLl~~i~Gl~~p~~G~ 66 (229)
+.+.-.+..|.+ +.|.||+|+|||||.++|+......-..
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~ 80 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVER 80 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence 344445556665 8999999999999999999987654333
No 488
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.62 E-value=0.0027 Score=52.60 Aligned_cols=21 Identities=33% Similarity=0.654 Sum_probs=19.5
Q ss_pred EEEEcCCCccHHHHHHHHHCC
Q 027067 39 LVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 39 ~~iiG~NGsGKSTLl~~i~Gl 59 (229)
+.|.||+|+|||||+++++..
T Consensus 47 vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 789999999999999999874
No 489
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.57 E-value=0.0061 Score=52.72 Aligned_cols=36 Identities=22% Similarity=0.307 Sum_probs=27.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEc
Q 027067 35 DGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN 70 (229)
Q Consensus 35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~ 70 (229)
+|..+.|.||.|+|||||.+.++.........+.+.
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~ 104 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIA 104 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhcccCCccccc
Confidence 466899999999999999999998765433334443
No 490
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.56 E-value=0.0061 Score=53.24 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067 35 DGGALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
..-+++|+|+.|+|||||++.|++.+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998654
No 491
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=95.49 E-value=0.0075 Score=53.75 Aligned_cols=57 Identities=14% Similarity=0.047 Sum_probs=33.6
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeC
Q 027067 136 ARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATH 196 (229)
Q Consensus 136 ~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH 196 (229)
...+|.++..++.-...+...|-++++ |-.|....+.+..+.+.+.+.+..+|.+|-
T Consensus 195 ~~~~~~~e~~~l~~~~~~~~kP~i~v~----NK~D~~~~~~l~~l~~~~~~~~~~vv~iSA 251 (397)
T 1wxq_A 195 PTKWSQDDLLAFASEIRRVNKPMVIAA----NKADAASDEQIKRLVREEEKRGYIVIPTSA 251 (397)
T ss_dssp GGGCCHHHHHHHHHHHHHHHSCEEEEE----ECGGGSCHHHHHHHHHHHHHTTCEEEEECH
T ss_pred cccCCHHHHHHHHHhhhccCCCEEEEE----eCccccchHHHHHHHHHHhhcCCcEEEEec
Confidence 347888888888777767778988887 222222123344444444444555555553
No 492
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.45 E-value=0.0076 Score=50.13 Aligned_cols=26 Identities=23% Similarity=0.229 Sum_probs=22.3
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHCC
Q 027067 34 HDGGALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
.+...+.|.||.|+|||||.+.++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34457889999999999999999875
No 493
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=94.44 E-value=0.0025 Score=50.42 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=19.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHCC
Q 027067 37 GALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 37 e~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
=.++|+|+.|+|||||++.+.+-
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 36899999999999999888753
No 494
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.42 E-value=0.0098 Score=50.99 Aligned_cols=25 Identities=36% Similarity=0.337 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCccHHHHHHHHHCCC
Q 027067 36 GGALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 36 Ge~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
+.-+.|.||.|+|||+|+++|+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998654
No 495
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.41 E-value=0.0081 Score=50.36 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHHCCC
Q 027067 36 GGALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 36 Ge~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
+.-+.|.||.|+|||||.+.++...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4568899999999999999999765
No 496
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.41 E-value=0.0089 Score=51.76 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHCCC
Q 027067 36 GGALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 36 Ge~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
+..+.|.||.|+|||||++.++...
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999998754
No 497
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.38 E-value=0.0099 Score=50.48 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067 35 DGGALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.|.++.|.||.|+|||||++.++...
T Consensus 30 ~~~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 30 NYPLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred cCCeEEEECCCcCCHHHHHHHHHHHc
Confidence 46899999999999999999987543
No 498
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=95.37 E-value=0.0068 Score=54.41 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++|+|+.|+|||||++.++|-.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
No 499
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=95.36 E-value=0.0056 Score=53.36 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=21.5
Q ss_pred EEEEEcCCCccHHHHHHHHHCCC
Q 027067 38 ALVLTGTNGSGKSTFLRMLAGFS 60 (229)
Q Consensus 38 ~~~iiG~NGsGKSTLl~~i~Gl~ 60 (229)
.++|+|..|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999964
No 500
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=95.36 E-value=0.011 Score=50.48 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=20.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHCC
Q 027067 37 GALVLTGTNGSGKSTFLRMLAGF 59 (229)
Q Consensus 37 e~~~iiG~NGsGKSTLl~~i~Gl 59 (229)
-.++|+|+.|+|||||++.+.+-
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999998776
Done!