Query 027068
Match_columns 229
No_of_seqs 296 out of 1477
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 06:55:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027068.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027068hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1au7_A Protein PIT-1, GHF-1; c 100.0 2.4E-32 8.3E-37 220.9 3.3 134 8-154 12-145 (146)
2 3l1p_A POU domain, class 5, tr 100.0 3.7E-32 1.3E-36 221.8 1.3 137 7-154 18-154 (155)
3 2xsd_C POU domain, class 3, tr 100.0 5.1E-32 1.8E-36 223.0 1.6 140 7-157 21-160 (164)
4 3d1n_I POU domain, class 6, tr 100.0 9.7E-31 3.3E-35 212.3 3.4 139 7-153 12-150 (151)
5 1e3o_C Octamer-binding transcr 100.0 2.6E-30 8.8E-35 211.8 2.9 142 8-154 16-159 (160)
6 2dmt_A Homeobox protein BARH-l 99.8 3.1E-20 1.1E-24 135.1 7.4 65 87-156 13-77 (80)
7 2da3_A Alpha-fetoprotein enhan 99.8 3.3E-20 1.1E-24 134.5 6.9 65 87-156 13-77 (80)
8 1puf_A HOX-1.7, homeobox prote 99.8 6.3E-20 2.1E-24 132.6 8.1 72 81-157 3-74 (77)
9 2dms_A Homeobox protein OTX2; 99.8 8.8E-20 3E-24 132.7 7.3 65 89-158 5-69 (80)
10 1nk2_P Homeobox protein VND; h 99.8 8.8E-20 3E-24 131.8 7.2 68 86-158 4-71 (77)
11 2dmq_A LIM/homeobox protein LH 99.8 1.3E-19 4.6E-24 131.5 8.0 66 89-159 5-70 (80)
12 2kt0_A Nanog, homeobox protein 99.8 9E-20 3.1E-24 133.6 6.5 66 86-156 17-82 (84)
13 2vi6_A Homeobox protein nanog; 99.8 4.5E-20 1.5E-24 127.9 4.7 61 90-155 2-62 (62)
14 2dmu_A Homeobox protein goosec 99.8 1.5E-19 5E-24 128.2 7.3 62 90-156 6-67 (70)
15 2da1_A Alpha-fetoprotein enhan 99.8 8.3E-20 2.8E-24 129.4 5.9 63 89-156 5-67 (70)
16 2h1k_A IPF-1, pancreatic and d 99.8 1.1E-19 3.8E-24 126.4 6.1 60 91-155 3-62 (63)
17 2cra_A Homeobox protein HOX-B1 99.8 7.7E-20 2.6E-24 129.7 5.2 63 89-156 5-67 (70)
18 1zq3_P PRD-4, homeotic bicoid 99.8 2.1E-19 7.2E-24 126.9 7.5 64 91-159 2-65 (68)
19 1wh5_A ZF-HD homeobox family p 99.8 7.7E-20 2.6E-24 133.4 5.2 62 87-153 13-78 (80)
20 2l7z_A Homeobox protein HOX-A1 99.8 1.9E-19 6.5E-24 128.8 7.1 65 89-158 5-69 (73)
21 2da2_A Alpha-fetoprotein enhan 99.8 9.2E-20 3.1E-24 129.2 5.3 64 89-157 5-68 (70)
22 2cue_A Paired box protein PAX6 99.8 1.7E-19 5.8E-24 131.2 6.8 63 90-157 6-68 (80)
23 3a01_A Homeodomain-containing 99.8 2.2E-19 7.4E-24 134.4 7.4 68 87-159 13-80 (93)
24 1fjl_A Paired protein; DNA-bin 99.8 1.8E-19 6.3E-24 131.3 6.8 64 88-156 15-78 (81)
25 1ahd_P Antennapedia protein mu 99.8 1.9E-19 6.6E-24 127.1 6.4 63 91-158 2-64 (68)
26 2hdd_A Protein (engrailed home 99.8 1.4E-19 4.7E-24 125.1 5.5 58 91-153 3-60 (61)
27 1ftt_A TTF-1 HD, thyroid trans 99.8 2.9E-19 9.8E-24 126.2 7.1 63 91-158 2-64 (68)
28 1ig7_A Homeotic protein MSX-1; 99.8 2.1E-19 7E-24 122.8 5.8 57 92-153 1-57 (58)
29 1yz8_P Pituitary homeobox 2; D 99.8 1.3E-19 4.5E-24 127.8 4.8 64 90-158 2-65 (68)
30 2e1o_A Homeobox protein PRH; D 99.8 3.6E-19 1.2E-23 126.3 6.9 62 90-156 6-67 (70)
31 1jgg_A Segmentation protein EV 99.8 2.5E-19 8.5E-24 123.4 5.9 58 92-154 2-59 (60)
32 1wh7_A ZF-HD homeobox family p 99.8 1.5E-19 5.1E-24 132.0 4.6 61 87-153 13-78 (80)
33 1b8i_A Ultrabithorax, protein 99.8 2.2E-19 7.7E-24 131.0 5.5 64 88-156 17-80 (81)
34 1bw5_A ISL-1HD, insulin gene e 99.8 1.9E-19 6.4E-24 126.3 4.7 62 90-156 2-63 (66)
35 2m0c_A Homeobox protein arista 99.8 4.4E-19 1.5E-23 127.0 6.7 65 88-157 6-70 (75)
36 2djn_A Homeobox protein DLX-5; 99.8 1.6E-19 5.6E-24 128.0 4.4 61 90-155 6-66 (70)
37 1uhs_A HOP, homeodomain only p 99.8 7.5E-19 2.6E-23 125.3 7.7 62 92-158 2-64 (72)
38 2hi3_A Homeodomain-only protei 99.8 9.3E-19 3.2E-23 125.2 7.8 63 91-158 2-65 (73)
39 2k40_A Homeobox expressed in E 99.8 4.5E-19 1.6E-23 124.6 5.7 62 91-157 1-62 (67)
40 2da4_A Hypothetical protein DK 99.8 5.4E-19 1.9E-23 128.5 6.2 68 87-158 4-74 (80)
41 2r5y_A Homeotic protein sex co 99.8 3.6E-19 1.2E-23 131.7 4.8 63 88-155 25-87 (88)
42 3a02_A Homeobox protein arista 99.8 4.4E-19 1.5E-23 122.1 4.9 58 94-156 2-59 (60)
43 1b72_A Protein (homeobox prote 99.8 9.6E-19 3.3E-23 131.7 6.3 65 88-157 31-95 (97)
44 3rkq_A Homeobox protein NKX-2. 99.8 9.1E-19 3.1E-23 119.2 5.6 57 91-152 2-58 (58)
45 2cuf_A FLJ21616 protein; homeo 99.8 1.7E-18 6E-23 129.8 7.7 65 89-158 5-84 (95)
46 1akh_A Protein (mating-type pr 99.7 8.1E-19 2.8E-23 121.0 4.6 59 89-152 3-61 (61)
47 2da5_A Zinc fingers and homeob 99.7 2.5E-18 8.6E-23 123.7 7.3 61 93-158 9-69 (75)
48 3a03_A T-cell leukemia homeobo 99.7 1.3E-18 4.6E-23 118.2 5.5 54 96-154 2-55 (56)
49 3nar_A ZHX1, zinc fingers and 99.7 1.2E-18 4E-23 131.1 5.1 64 87-155 21-84 (96)
50 2dn0_A Zinc fingers and homeob 99.7 2E-18 6.7E-23 124.4 6.0 62 91-157 8-69 (76)
51 2ly9_A Zinc fingers and homeob 99.7 3.3E-18 1.1E-22 122.3 6.4 62 91-157 6-67 (74)
52 2ecc_A Homeobox and leucine zi 99.7 2.4E-18 8.1E-23 124.3 5.4 60 93-157 5-64 (76)
53 1x2n_A Homeobox protein pknox1 99.7 6E-18 2.1E-22 120.8 7.3 64 89-157 5-71 (73)
54 1puf_B PRE-B-cell leukemia tra 99.7 5.5E-18 1.9E-22 121.0 6.8 62 91-157 1-65 (73)
55 2da6_A Hepatocyte nuclear fact 99.7 7.5E-18 2.6E-22 128.0 7.0 70 88-158 3-89 (102)
56 2ecb_A Zinc fingers and homeob 99.7 1.4E-17 4.6E-22 123.9 7.0 57 97-158 17-73 (89)
57 1du6_A PBX1, homeobox protein 99.7 3.9E-18 1.3E-22 118.7 3.7 58 91-153 3-63 (64)
58 2dmn_A Homeobox protein TGIF2L 99.7 3.3E-17 1.1E-21 120.1 8.2 65 90-158 6-72 (83)
59 1b72_B Protein (PBX1); homeodo 99.7 1.5E-17 5.1E-22 122.5 6.1 61 92-157 2-65 (87)
60 2dmp_A Zinc fingers and homeob 99.7 4.2E-17 1.4E-21 121.1 8.5 58 96-158 18-75 (89)
61 1k61_A Mating-type protein alp 99.7 1.4E-17 4.9E-22 114.4 5.5 56 94-154 1-59 (60)
62 1wi3_A DNA-binding protein SAT 99.7 1.4E-17 4.6E-22 117.2 5.4 59 88-151 4-63 (71)
63 1lfb_A Liver transcription fac 99.7 6.5E-18 2.2E-22 128.0 3.0 69 88-157 6-91 (99)
64 2cqx_A LAG1 longevity assuranc 99.7 8.8E-18 3E-22 120.1 3.3 60 91-155 8-68 (72)
65 1mnm_C Protein (MAT alpha-2 tr 99.7 5.1E-17 1.7E-21 119.8 6.1 58 90-152 26-86 (87)
66 2l9r_A Homeobox protein NKX-3. 99.7 2.3E-17 7.8E-22 117.2 3.7 57 96-157 9-65 (69)
67 1le8_B Mating-type protein alp 99.7 8E-17 2.7E-21 117.9 5.5 57 93-154 4-63 (83)
68 3nau_A Zinc fingers and homeob 99.7 7.9E-17 2.7E-21 113.0 5.2 52 99-155 12-63 (66)
69 2e19_A Transcription factor 8; 99.7 5.9E-17 2E-21 113.3 4.1 54 95-153 7-60 (64)
70 1ic8_A Hepatocyte nuclear fact 99.6 3.1E-17 1E-21 138.1 2.7 127 14-153 41-193 (194)
71 1x2m_A LAG1 longevity assuranc 99.6 8.2E-17 2.8E-21 112.6 3.0 49 100-153 9-58 (64)
72 2d5v_A Hepatocyte nuclear fact 99.6 2.8E-16 9.7E-21 128.5 4.3 65 88-157 94-158 (164)
73 3k2a_A Homeobox protein MEIS2; 99.6 2.5E-15 8.7E-20 105.8 4.5 56 97-157 4-62 (67)
74 2h8r_A Hepatocyte nuclear fact 99.4 4.7E-14 1.6E-18 120.4 4.9 65 86-151 137-218 (221)
75 2da7_A Zinc finger homeobox pr 99.4 1E-13 3.4E-18 98.0 4.5 46 100-150 14-59 (71)
76 2lk2_A Homeobox protein TGIF1; 99.3 7.1E-13 2.4E-17 98.2 4.7 57 96-157 10-69 (89)
77 1mh3_A Maltose binding-A1 home 99.2 1.9E-12 6.6E-17 117.2 3.2 56 92-152 366-421 (421)
78 2nzz_A Penetratin conjugated G 98.7 2.6E-09 9E-14 66.4 0.0 20 138-157 1-20 (37)
79 2ys9_A Homeobox and leucine zi 92.9 0.06 2.1E-06 37.6 2.6 39 103-146 18-56 (70)
80 1hlv_A CENP-B, major centromer 71.1 6.4 0.00022 29.0 5.0 50 94-151 4-53 (131)
81 2glo_A Brinker CG9653-PA; prot 70.7 4.4 0.00015 26.0 3.6 46 95-146 3-48 (59)
82 2elh_A CG11849-PA, LD40883P; s 68.9 6 0.00021 27.5 4.2 46 91-146 16-61 (87)
83 2rgt_A Fusion of LIM/homeobox 59.6 0.15 5.2E-06 40.5 -6.6 30 89-119 134-163 (169)
84 3hug_A RNA polymerase sigma fa 58.9 9.8 0.00033 26.5 3.7 48 98-155 38-85 (92)
85 1tc3_C Protein (TC3 transposas 56.7 10 0.00035 22.1 3.1 40 97-146 5-44 (51)
86 2o8x_A Probable RNA polymerase 52.6 11 0.00039 24.1 3.0 46 97-152 15-60 (70)
87 1jko_C HIN recombinase, DNA-in 46.9 7.5 0.00026 23.2 1.3 41 98-148 6-46 (52)
88 1s7o_A Hypothetical UPF0122 pr 43.5 24 0.00083 25.9 3.9 47 98-154 23-69 (113)
89 3mzy_A RNA polymerase sigma-H 43.1 23 0.00078 26.1 3.8 47 97-154 109-155 (164)
90 2qko_A Possible transcriptiona 42.4 14 0.00047 28.7 2.5 44 103-152 34-77 (215)
91 1p4w_A RCSB; solution structur 39.8 36 0.0012 24.3 4.3 45 95-150 32-76 (99)
92 1ku3_A Sigma factor SIGA; heli 38.9 29 0.001 22.7 3.4 50 97-152 10-59 (73)
93 3c57_A Two component transcrip 37.5 40 0.0014 23.5 4.2 45 97-152 27-71 (95)
94 2p7v_B Sigma-70, RNA polymeras 36.2 23 0.00078 22.9 2.5 49 97-151 5-53 (68)
95 1fse_A GERE; helix-turn-helix 36.1 47 0.0016 21.3 4.1 45 95-150 9-53 (74)
96 1je8_A Nitrate/nitrite respons 34.4 37 0.0013 23.0 3.4 44 96-150 20-63 (82)
97 1xsv_A Hypothetical UPF0122 pr 34.1 33 0.0011 25.0 3.3 48 98-155 26-73 (113)
98 2q24_A Putative TETR family tr 32.9 17 0.00058 27.6 1.6 43 101-150 19-61 (194)
99 1fi6_A EH domain protein REPS1 32.1 37 0.0013 23.1 3.2 46 96-145 1-50 (92)
100 2i10_A Putative TETR transcrip 31.7 28 0.00094 26.8 2.7 47 100-152 14-60 (202)
101 1tty_A Sigma-A, RNA polymerase 31.2 33 0.0011 23.5 2.7 45 97-151 18-66 (87)
102 2x7l_M HIV REV; nuclear export 30.5 35 0.0012 25.6 2.8 35 105-158 17-51 (115)
103 2rn7_A IS629 ORFA; helix, all 30.2 60 0.0021 22.8 4.1 47 95-145 4-52 (108)
104 1or7_A Sigma-24, RNA polymeras 30.1 41 0.0014 25.7 3.5 48 98-155 141-188 (194)
105 3ulq_B Transcriptional regulat 29.7 65 0.0022 22.3 4.2 44 92-146 24-67 (90)
106 2jn6_A Protein CGL2762, transp 28.7 62 0.0021 22.2 3.9 42 95-146 3-46 (97)
107 2rnj_A Response regulator prot 28.5 43 0.0015 23.0 3.0 44 96-150 28-71 (91)
108 3dcf_A Transcriptional regulat 27.6 27 0.00094 26.5 2.0 41 103-149 37-77 (218)
109 3q0w_A HTH-type transcriptiona 27.3 24 0.00081 27.9 1.6 41 105-151 52-92 (236)
110 1u78_A TC3 transposase, transp 26.8 58 0.002 23.5 3.7 42 96-147 5-46 (141)
111 3fiw_A Putative TETR-family tr 26.4 31 0.0011 27.3 2.2 53 93-151 20-73 (211)
112 1x3u_A Transcriptional regulat 26.1 38 0.0013 22.2 2.3 42 98-150 17-58 (79)
113 1rp3_A RNA polymerase sigma fa 26.0 48 0.0016 26.1 3.2 48 97-154 187-234 (239)
114 3ccy_A Putative TETR-family tr 25.4 35 0.0012 26.0 2.2 42 102-149 19-60 (203)
115 3on2_A Probable transcriptiona 24.8 33 0.0011 25.6 1.9 45 101-151 16-60 (199)
116 2fq4_A Transcriptional regulat 24.6 35 0.0012 25.8 2.1 43 103-151 18-60 (192)
117 3kz9_A SMCR; transcriptional r 24.3 41 0.0014 25.1 2.4 40 104-149 24-63 (206)
118 3g1o_A Transcriptional regulat 23.8 38 0.0013 27.0 2.2 42 103-150 49-90 (255)
119 2np3_A Putative TETR-family re 23.7 19 0.00065 27.8 0.3 43 102-150 35-77 (212)
120 2iai_A Putative transcriptiona 23.5 64 0.0022 25.2 3.5 43 102-150 35-77 (230)
121 1iuf_A Centromere ABP1 protein 22.9 1.2E+02 0.0042 22.7 4.9 51 92-146 6-59 (144)
122 3lph_A Protein REV; helix-loop 22.3 49 0.0017 22.8 2.2 35 104-157 19-53 (72)
123 2qwt_A Transcriptional regulat 22.2 37 0.0013 25.9 1.8 41 103-150 19-59 (196)
124 3g7r_A Putative transcriptiona 21.8 34 0.0012 26.7 1.5 41 104-150 42-82 (221)
125 3rd3_A Probable transcriptiona 21.6 35 0.0012 25.4 1.5 43 101-149 14-56 (197)
126 2iu5_A DHAS, YCEG, HTH-type dh 21.3 57 0.0019 24.6 2.7 44 102-151 18-61 (195)
127 3dew_A Transcriptional regulat 21.2 30 0.001 25.9 1.0 44 102-151 13-56 (206)
128 3bni_A Putative TETR-family tr 21.1 50 0.0017 25.9 2.4 40 104-149 50-89 (229)
129 2x48_A CAG38821; archeal virus 20.9 54 0.0019 19.9 2.1 36 100-145 18-53 (55)
130 2rek_A Putative TETR-family tr 20.5 35 0.0012 25.8 1.3 41 103-150 22-62 (199)
131 2g7l_A TETR-family transcripti 20.3 56 0.0019 26.5 2.6 54 93-152 14-68 (243)
132 2rae_A Transcriptional regulat 20.1 43 0.0015 25.4 1.7 42 102-149 22-63 (207)
No 1
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.97 E-value=2.4e-32 Score=220.90 Aligned_cols=134 Identities=20% Similarity=0.263 Sum_probs=114.1
Q ss_pred cccCCchhhhhcccccCcCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhcCCCCCCCCCCCccCCC
Q 027068 8 FQQGGEMERQFQQDGGDTSNGLCVKVMTDEQMELLRKQIAVYAMICEQLVQMHKVFSAQNEIAGMRMGNPYFDPFVASGS 87 (229)
Q Consensus 8 ~~~~~~~~~~~q~~~~~~~~~~~~~~~t~~q~~~lr~qi~~~~~ic~q~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 87 (229)
|+++++.+++.|+|||.|+|.+||+++|+++||+|+++.++++++|+..+.+.+|+.+.+...+. +....+.
T Consensus 12 ~k~~ri~lg~tQ~~vg~al~~l~g~~~Sqtti~rfe~l~ls~knm~kLkPlL~~wl~e~e~~~~~--------~~~~~~~ 83 (146)
T 1au7_A 12 FKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFENLQLSFKNACKLKAILSKWLEEAEQVGAL--------YNEKVGA 83 (146)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTTSSCCCHHHHHHHHTTCSBHHHHHHHHHHHHHHHHHCCC-------------------
T ss_pred HHHHHHhccCcHHhhhhhcchhccCCCCcchHHHHhccCCChHHHHhcchHHHHHHHHhhcccCc--------cCcccCC
Confidence 78899999999999999999999999999999999999999999999999999999987643211 1111233
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHH
Q 027068 88 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (229)
Q Consensus 88 ~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~ 154 (229)
.++.||.||.|+..|+.+||..|..+ +||+..+|.+||..| ||++.+|+|||||||+|+||+
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEH-SKPSSQEIMRMAEEL----NLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHc-CCCCHHHHHHHHHHh----CCChhhchhhhHhhhhhhhcc
Confidence 45678899999999999999999999 999999999999999 999999999999999999885
No 2
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.97 E-value=3.7e-32 Score=221.83 Aligned_cols=137 Identities=18% Similarity=0.160 Sum_probs=117.8
Q ss_pred CcccCCchhhhhcccccCcCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhcCCCCCCCCCCCccCC
Q 027068 7 NFQQGGEMERQFQQDGGDTSNGLCVKVMTDEQMELLRKQIAVYAMICEQLVQMHKVFSAQNEIAGMRMGNPYFDPFVASG 86 (229)
Q Consensus 7 ~~~~~~~~~~~~q~~~~~~~~~~~~~~~t~~q~~~lr~qi~~~~~ic~q~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 86 (229)
.|+++++.+++.|+|||+|+|.|||++||+++||+|++..++++++|+..+.+.+|+.+.+...... .......
T Consensus 18 ~fk~~ri~lg~tq~~vg~al~~l~G~~~Sqtti~rfE~l~ls~~nm~kLkPlL~~Wl~eae~~~~~~-~~~~~~~----- 91 (155)
T 3l1p_A 18 LLKQKRITLGYTQADVGLTLGVLFGKVFSQTTISRFEALQLSLKNMSKLRPLLEKWVEEADNNENLQ-EISKSET----- 91 (155)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTTCHHHH-HSSCC-------
T ss_pred HHHhhhheecccHHHHHHHHHhhcCcccccccccccccccCChhhHhhcchHHHHHhhhhhcccCcc-ccccccc-----
Confidence 3789999999999999999999999999999999999999999999999999999998876321111 0111111
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHH
Q 027068 87 SQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (229)
Q Consensus 87 ~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~ 154 (229)
..++++|.|+.|+..|+.+||..|..+ +||+..+|.+||..| ||++.+|+|||||||+|+||.
T Consensus 92 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yps~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 92 LVQARKRKRTSIENRVRWSLETMFLKS-PKPSLQQITHIANQL----GLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp -CCCSCCCCCCCCHHHHHHHHTTTTTC-SCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHC-
T ss_pred cccCCCCCCcccCHHHHHHHHHHHccC-CCCCHHHHHHHHHHc----CCChhheeeccccccccccCC
Confidence 113577889999999999999999999 999999999999999 999999999999999999874
No 3
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.97 E-value=5.1e-32 Score=222.97 Aligned_cols=140 Identities=20% Similarity=0.261 Sum_probs=111.4
Q ss_pred CcccCCchhhhhcccccCcCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhcCCCCCCCCCCCccCC
Q 027068 7 NFQQGGEMERQFQQDGGDTSNGLCVKVMTDEQMELLRKQIAVYAMICEQLVQMHKVFSAQNEIAGMRMGNPYFDPFVASG 86 (229)
Q Consensus 7 ~~~~~~~~~~~~q~~~~~~~~~~~~~~~t~~q~~~lr~qi~~~~~ic~q~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 86 (229)
.|+++++.+++.|+|||+|+|.|||++||+++||+|+++.++++++|...+.+.+|+...+...+... ... ...
T Consensus 21 ~fk~~ri~lg~tQ~~vg~alg~l~g~~~Sqtti~rFE~l~ls~kn~~klkPlL~~wl~eae~~~~~~~---~~~---~~~ 94 (164)
T 2xsd_C 21 QFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEETDSSSGSPT---NLD---KIA 94 (164)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHTTCSBHHHHHHHHHHHHHHHHHHCC------------------
T ss_pred HHHHHHhhcCCcccccccccccccCCCcCcchhhhhhccCCCHHHHHHcchhHHHHHhhhccccCCCc---ccc---ccc
Confidence 47899999999999999999999999999999999999999999999999999999998764322111 011 112
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhhC
Q 027068 87 SQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (229)
Q Consensus 87 ~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~~ 157 (229)
..++.||.||.|+..|+.+||..|..+ +||+..+|.+||..| ||++.+|+|||||||+|+||....
T Consensus 95 ~~~~~rr~Rt~ft~~Ql~~LE~~F~~~-~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~~~~ 160 (164)
T 2xsd_C 95 AQGRKRKKRTSIEVGVKGALESHFLKC-PKPSAHEITGLADSL----QLEKEVVRVWFCNRRQKEKRMTPA 160 (164)
T ss_dssp -----------CCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTBSCC-
T ss_pred ccccCCCCceeccHHHHHHHHHHHhcC-CCCCHHHHHHHHHHH----CCChhhhhhhhHHhhHHHhhccCC
Confidence 345678899999999999999999999 999999999999999 999999999999999999986643
No 4
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.96 E-value=9.7e-31 Score=212.34 Aligned_cols=139 Identities=19% Similarity=0.194 Sum_probs=119.5
Q ss_pred CcccCCchhhhhcccccCcCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhcCCCCCCCCCCCccCC
Q 027068 7 NFQQGGEMERQFQQDGGDTSNGLCVKVMTDEQMELLRKQIAVYAMICEQLVQMHKVFSAQNEIAGMRMGNPYFDPFVASG 86 (229)
Q Consensus 7 ~~~~~~~~~~~~q~~~~~~~~~~~~~~~t~~q~~~lr~qi~~~~~ic~q~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 86 (229)
.|+++++..++.|+|||.|+|.+||+++|+++||+|++...++.++|...+.+.+|+.+........... ..+ ...+
T Consensus 12 ~f~~~ri~lg~tQ~~vg~al~~l~g~~~Sqsti~rfe~l~ls~kn~~klkPll~~Wl~e~e~~~~~~~~~--~~~-~~~~ 88 (151)
T 3d1n_I 12 NFKIRRLSLGLTQTQVGQAMTATEGPAYSQSAISRFEKLDITPKSAQKLKPVLEKWLNEAELRNQEGQQN--LME-FVGG 88 (151)
T ss_dssp HHHHHHHTTTCCHHHHHHHHSCSSSCCCCHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHCSTT--HHH-HHCS
T ss_pred HHHHHHhhcCCCcccHHHhhccccCCCCCccccccccCCCCChhHHHHhchhHHHHHHHHHhccccCccc--ccc-cCCC
Confidence 4788999999999999999999999999999999999999999999999999999999876432111110 001 1122
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHH
Q 027068 87 SQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 153 (229)
Q Consensus 87 ~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr 153 (229)
..++.||.|+.|+..|+.+||..|..+ +||+..+|.+||..| ||++.+|+|||||||+|+||
T Consensus 89 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 89 EPSKKRKRRTSFTPQAIEALNAYFEKN-PLPTGQEITEMAKEL----NYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp SCCCCCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCcccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHH----CCCHHHhHHHHHHHHhccCC
Confidence 345678899999999999999999999 999999999999999 99999999999999999986
No 5
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.96 E-value=2.6e-30 Score=211.83 Aligned_cols=142 Identities=15% Similarity=0.141 Sum_probs=111.9
Q ss_pred cccCCchhhhhcccccCcCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhcCC--CCCCCCCCCccC
Q 027068 8 FQQGGEMERQFQQDGGDTSNGLCVKVMTDEQMELLRKQIAVYAMICEQLVQMHKVFSAQNEIAGMR--MGNPYFDPFVAS 85 (229)
Q Consensus 8 ~~~~~~~~~~~q~~~~~~~~~~~~~~~t~~q~~~lr~qi~~~~~ic~q~~~~~~~~~~~~~~~~~~--~~~~~~~p~~~~ 85 (229)
|++.++.+++.|++||.++|.+||+++++++|++|+++..++.++|+..+.+.+|+.+.....+.. .+.+........
T Consensus 16 ~k~~r~~lg~tQ~~vg~~lg~l~g~~~sq~ti~rfE~l~lS~knm~klkPlL~~WL~e~e~~~~~~~~~~s~~~~~~~~~ 95 (160)
T 1e3o_C 16 FKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMSKLKPLLEKWLNDAEANLSSDSSLSSPSALNSPGI 95 (160)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHC--------------------
T ss_pred HHHHHHHcCCCHHHHHHhhccccCCCcCccccccccccCCChHHHHhcchhHHHHHHhhhcccccCCCCCCCCCcCCCCC
Confidence 677788999999999999999999999999999999999999999999999999999876422111 111111100011
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHH
Q 027068 86 GSQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (229)
Q Consensus 86 ~~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~ 154 (229)
.+..++||.|+.|+..|+.+||..|..+ +||+..+|.+||..| ||++.+|+|||||||+|+||+
T Consensus 96 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 96 EGLSRRRKKRTSIETNIRVALEKSFMEN-QKPTSEDITLIAEQL----NMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp --------CCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCCCcCccccCHHHHHHHHHHHhhc-CCCCHHHHHHHHHHH----CCChHHhhHhhHHhhhhhhcc
Confidence 2334678899999999999999999999 999999999999999 999999999999999999985
No 6
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=3.1e-20 Score=135.15 Aligned_cols=65 Identities=28% Similarity=0.351 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhh
Q 027068 87 SQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (229)
Q Consensus 87 ~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~ 156 (229)
..++.++.|+.|+..|+.+||..|..+ +||+..+|.+||..| ||++.+|+|||||||+|+||...
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEKQ-KYLSTPDRIDLAESL----GLSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHh----CCCHHHeeeccHHHHHHhhcccC
Confidence 345678899999999999999999999 999999999999999 99999999999999999998654
No 7
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.81 E-value=3.3e-20 Score=134.53 Aligned_cols=65 Identities=31% Similarity=0.456 Sum_probs=60.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhh
Q 027068 87 SQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (229)
Q Consensus 87 ~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~ 156 (229)
...+.+|.||.|+.+|+.+||..|..+ +||+..+|.+||..| ||++.+|+|||||||+|+||...
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~f~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~ 77 (80)
T 2da3_A 13 EPQRDKRLRTTITPEQLEILYQKYLLD-SNPTRKMLDHIAHEV----GLKKRVVQVWFQNTRARERKSGP 77 (80)
T ss_dssp CCCCCTTCCSSCCTTTHHHHHHHHHHC-SSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHH----CcCHHHhHHHhHHHHHhHhhhcc
Confidence 455678999999999999999999999 999999999999999 99999999999999999998653
No 8
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.81 E-value=6.3e-20 Score=132.60 Aligned_cols=72 Identities=24% Similarity=0.271 Sum_probs=64.6
Q ss_pred CCccCCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhhC
Q 027068 81 PFVASGSQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (229)
Q Consensus 81 p~~~~~~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~~ 157 (229)
|.+...+.+..++.|+.|+..|+.+||..|..+ +||+..+|.+||..| ||++.+|+|||||||+|+|+..+.
T Consensus 3 p~~~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 3 PAANWLHARSTRKKRCPYTKHQTLELEKEFLFN-MYLTRDRRYEVARLL----NLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp TTTTSCCCCTTSCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccccCCCCCCCCCCCCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHhhhh
Confidence 334445566788999999999999999999999 999999999999999 999999999999999999997654
No 9
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.80 E-value=8.8e-20 Score=132.65 Aligned_cols=65 Identities=29% Similarity=0.468 Sum_probs=61.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhhCC
Q 027068 89 KLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (229)
Q Consensus 89 ~~~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~~~ 158 (229)
++.+|.|+.|+..|+.+||..|..+ +||+..+|.+||..| ||++.+|+|||||||+|+|+..+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~rk~~~~~ 69 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKT-RYPDIFMREEVALKI----NLPESRVQVWFKNRRAKCRQQQQQQ 69 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHTHHHHTTCSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcc-CCCCHHHHHHHHHHH----CcCHHHhhhhhHHHhHHhhHHHHcc
Confidence 4578899999999999999999999 999999999999999 9999999999999999999977654
No 10
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.80 E-value=8.8e-20 Score=131.82 Aligned_cols=68 Identities=25% Similarity=0.308 Sum_probs=62.3
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhhCC
Q 027068 86 GSQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (229)
Q Consensus 86 ~~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~~~ 158 (229)
+.+++.++.|+.|+..|+.+||..|..+ +||+..+|.+||..| ||++.+|+|||||||+|+|+.....
T Consensus 4 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 4 GLPNKKRKRRVLFTKAQTYELERRFRQQ-RYLSAPEREHLASLI----RLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp CCSCCCCCCCCCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHhhc-CCCCHHHHHHHHHHh----CCCHHHHHHHhHHhhcchhhhhccc
Confidence 3455678899999999999999999999 999999999999999 9999999999999999999876643
No 11
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.3e-19 Score=131.51 Aligned_cols=66 Identities=18% Similarity=0.321 Sum_probs=61.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhhCCC
Q 027068 89 KLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGVV 159 (229)
Q Consensus 89 ~~~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~~~~ 159 (229)
.+.+|.|+.|+..|+.+||..|..+ +||+..++.+||..| ||++.+|+|||||||+|+|++.....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~~~~ 70 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAIN-HNPDAKDLKQLAQKT----GLTKRVLQVWFQNARAKFRRNLLRQE 70 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHh----CCCHHHhhHccHHHHHHHHHHHHHHh
Confidence 3478899999999999999999999 999999999999999 99999999999999999999877653
No 12
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.79 E-value=9e-20 Score=133.59 Aligned_cols=66 Identities=26% Similarity=0.342 Sum_probs=61.1
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhh
Q 027068 86 GSQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (229)
Q Consensus 86 ~~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~ 156 (229)
...++.++.||.|+..|+.+||..|..+ +||+..+|.+||..| ||++.+|+|||||||+|+|+.++
T Consensus 17 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~k 82 (84)
T 2kt0_A 17 KVPVKKQKTRTVFSSTQLCVLNDRFQRQ-KYLSLQQMQELSNIL----NLSYKQVKTWFQNQRMKSKRWQK 82 (84)
T ss_dssp CCCSCSCCCSSCCCHHHHHHHHHHHHHS-SSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHHHHhh
Confidence 3445678999999999999999999999 999999999999999 99999999999999999998664
No 13
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.79 E-value=4.5e-20 Score=127.90 Aligned_cols=61 Identities=30% Similarity=0.393 Sum_probs=53.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHh
Q 027068 90 LTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQ 155 (229)
Q Consensus 90 ~~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~ 155 (229)
+.++.|+.|+..|+.+||..|..+ +||+..++.+||..| ||++.+|+|||||||+|+|+++
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQ-KYLSLQQMQELSSIL----NLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHh----CCCHHHhhHHhHHhhcchhhcC
Confidence 367899999999999999999999 999999999999999 9999999999999999999853
No 14
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.5e-19 Score=128.23 Aligned_cols=62 Identities=29% Similarity=0.482 Sum_probs=58.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhh
Q 027068 90 LTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (229)
Q Consensus 90 ~~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~ 156 (229)
..++.|+.|+..|+.+||..|..+ +||+..++.+||..| ||++.+|+|||||||+|+|+...
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 6 SGRRHRTIFTDEQLEALENLFQET-KYPDVGTREQLARKV----HLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp SSCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcc-CCCCHHHHHHHHHHH----CCCHHHeehccccccccccccCC
Confidence 467899999999999999999999 999999999999999 99999999999999999998654
No 15
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.79 E-value=8.3e-20 Score=129.41 Aligned_cols=63 Identities=21% Similarity=0.409 Sum_probs=59.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhh
Q 027068 89 KLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (229)
Q Consensus 89 ~~~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~ 156 (229)
++.++.|+.|+..|+.+||..|..+ +||+..++.+||..| ||++.+|+|||||||+|+|+..+
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDIN-NSPSEEQIKEMADKS----GLPQKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHC-SSCCTTHHHHHHHHH----CCCHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHh----CCCHHHHHHHhhhhhHHHhhhcc
Confidence 4578899999999999999999999 999999999999999 99999999999999999998654
No 16
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.79 E-value=1.1e-19 Score=126.40 Aligned_cols=60 Identities=28% Similarity=0.392 Sum_probs=56.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHh
Q 027068 91 TARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQ 155 (229)
Q Consensus 91 ~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~ 155 (229)
.++.|+.|+..|+.+||..|..+ +||+..++.+||..| ||++.+|+|||||||+|+|+..
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFN-KYISRPRRVELAVML----NLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCcCHHHHHHHHHHHhcC-CCcCHHHHHHHHHHh----CcCHHHhhHHHHhhhhhhhhhc
Confidence 67899999999999999999999 999999999999999 9999999999999999999863
No 17
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.79 E-value=7.7e-20 Score=129.74 Aligned_cols=63 Identities=29% Similarity=0.400 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhh
Q 027068 89 KLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (229)
Q Consensus 89 ~~~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~ 156 (229)
+..++.|+.|+..|+.+||..|..+ +||+..++.+||..| ||++.+|+|||||||+|+|+...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kk~~~ 67 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAAN-KFITKDKRRKISAAT----SLSERQITIWFQNRRVKEKKSGP 67 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHTTTSSCT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHH----CCCHHHhhHhhHhHHHHhcccCC
Confidence 3578899999999999999999999 999999999999999 99999999999999999988653
No 18
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.79 E-value=2.1e-19 Score=126.87 Aligned_cols=64 Identities=28% Similarity=0.383 Sum_probs=60.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhhCCC
Q 027068 91 TARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGVV 159 (229)
Q Consensus 91 ~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~~~~ 159 (229)
+++.|+.|+..|+.+||..|..+ +||+..++.+||..| ||++.+|+|||||||+|+|+......
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~kk~~~~~~ 65 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQG-RYLTAPRLADLSAKL----ALGTAQVKIWFKNRRRRHKIQSDQHK 65 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCCCCCcCHHHHHHHHHHHhcC-CCcCHHHHHHHHHHh----CcCHHHhhHhhHHHHHHHHHHhcccc
Confidence 57899999999999999999999 999999999999999 99999999999999999999887653
No 19
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.79 E-value=7.7e-20 Score=133.44 Aligned_cols=62 Identities=15% Similarity=0.174 Sum_probs=57.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhh----cCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHH
Q 027068 87 SQKLTARQRWTPTPAQLQILEHVYDE----CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 153 (229)
Q Consensus 87 ~~~~~rr~Rt~~t~~Ql~~Le~~F~~----~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr 153 (229)
..++.+|.||.||.+|+.+||..|+. + +||+..+|.+||..| ||++.+|+|||||||+|.|+
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~-~yp~~~~r~~La~~l----gL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 13 GGGIRKRHRTKFTAEQKERMLALAERIGWRI-QRQDDEVIQRFCQET----GVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCCSCCCSCCCCHHHHHHHHHHHHHHTSCC-CTTTHHHHHHHHHHS----CCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhccCcC-CCcCHHHHHHHHHHh----CCCcccccCCccccCcCCCC
Confidence 34567899999999999999999999 8 999999999999999 99999999999999999875
No 20
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.78 E-value=1.9e-19 Score=128.84 Aligned_cols=65 Identities=31% Similarity=0.363 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhhCC
Q 027068 89 KLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (229)
Q Consensus 89 ~~~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~~~ 158 (229)
.+.++.|+.|+..|+.+||..|..+ +||+..++.+||..| ||++.+|+|||||||+|+|+.....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATN-KFITKDKRRRISATT----NLSERQVTIWFQNRRVKEKKVINKL 69 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHT-SCCCHHHHHHHHHHH----TSCSHHHHHHHHHHHHHHTTSSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhC-CCcCHHHHHHHHHHH----CCCHHHHHHHHHHHhHHHHHHhccc
Confidence 3578899999999999999999999 999999999999999 9999999999999999999866543
No 21
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.78 E-value=9.2e-20 Score=129.18 Aligned_cols=64 Identities=20% Similarity=0.410 Sum_probs=59.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhhC
Q 027068 89 KLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (229)
Q Consensus 89 ~~~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~~ 157 (229)
++.++.|+.|+..|+.+||..|..+ +||+..++.+||..| ||++.+|+|||||||+|+|+....
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFFDAN-AYPKDDEFEQLSNLL----NLPTRVIVVWFQNARQKARKSGPS 68 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHS----CCCHHHHHHHHHHHHHHHCCCSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcC-CCcCHHHHHHHHHHh----CCCHHHhHHhhHhhhHHHhhcccc
Confidence 3578899999999999999999999 999999999999999 999999999999999999886543
No 22
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=1.7e-19 Score=131.23 Aligned_cols=63 Identities=25% Similarity=0.448 Sum_probs=59.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhhC
Q 027068 90 LTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (229)
Q Consensus 90 ~~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~~ 157 (229)
..+|.|+.|+..|+.+||..|..+ +||+..+|.+||..| ||++.+|+|||||||+|+|+..+.
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~~ 68 (80)
T 2cue_A 6 SGQRNRTSFTQEQIEALEKEFERT-HYPDVFARERLAAKI----DLPEARIQVWFSNRRAKWRREEKL 68 (80)
T ss_dssp SSCCCCCCSCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHh----CCCHHHhhHHHHHHHHHHHHHhhh
Confidence 478899999999999999999999 999999999999999 999999999999999999997755
No 23
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.78 E-value=2.2e-19 Score=134.44 Aligned_cols=68 Identities=21% Similarity=0.329 Sum_probs=62.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhhCCC
Q 027068 87 SQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGVV 159 (229)
Q Consensus 87 ~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~~~~ 159 (229)
.+++.++.||.|+..|+.+||..|..+ +||+..+|.+||..| ||++.+|+|||||||+|+|+......
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~~~~~~ 80 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHKQ-KYLASAERAALARGL----KMTDAQVKTWFQNRRTKWRRQTAEER 80 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHTT----TCCHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHcC-CCcCHHHHHHHHHHh----CCChhhcccccHhhhhhhhhhhHHHH
Confidence 345678899999999999999999999 999999999999999 99999999999999999999877653
No 24
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.78 E-value=1.8e-19 Score=131.26 Aligned_cols=64 Identities=28% Similarity=0.530 Sum_probs=59.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhh
Q 027068 88 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (229)
Q Consensus 88 ~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~ 156 (229)
.++.++.|+.|+..|+.+||..|..+ +||+..+|.+||..| ||++.+|+|||||||+|+|++..
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERT-QYPDIYTREELAQRT----NLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHH----CcCHHHHHHHHHHHhhhhhhhcc
Confidence 45678899999999999999999999 999999999999999 99999999999999999998764
No 25
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.78 E-value=1.9e-19 Score=127.15 Aligned_cols=63 Identities=25% Similarity=0.338 Sum_probs=59.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhhCC
Q 027068 91 TARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (229)
Q Consensus 91 ~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~~~ 158 (229)
++|.|+.||..|+.+||..|..+ +||+..++.+||..| ||++.+|+|||||||+|+|+.....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~~~~ 64 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFN-RYLTRRRRIEIAHAL----SLTERQIKIWFQNRRMKWKKENKTK 64 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHC-SSCCTTHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCcCHHHHHHHHHHHccC-CCCCHHHHHHHHHHH----CcCHhhhhHHhHHHHhHHhHhcccc
Confidence 57889999999999999999999 999999999999999 9999999999999999999977553
No 26
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.78 E-value=1.4e-19 Score=125.05 Aligned_cols=58 Identities=28% Similarity=0.511 Sum_probs=53.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHH
Q 027068 91 TARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 153 (229)
Q Consensus 91 ~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr 153 (229)
.+|.|+.||..|+.+||..|..+ +||+..++.+||..| ||++.+|+|||||||+|+||
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNEN-RYLTERRRQQLSSEL----GLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHcc-CCCCHHHHHHHHHHH----CcCHHHHHHHhhhhcccccc
Confidence 57899999999999999999999 999999999999999 99999999999999999987
No 27
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.78 E-value=2.9e-19 Score=126.17 Aligned_cols=63 Identities=22% Similarity=0.351 Sum_probs=59.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhhCC
Q 027068 91 TARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (229)
Q Consensus 91 ~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~~~ 158 (229)
+++.|+.||..|+.+||..|..+ +||+..++.+||..| ||++.+|+|||||||+|+|+..+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kr~~~~~ 64 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQ-KYLSAPEREHLASMI----HLTPTQVKIWFQNHRYKMKRQAKDK 64 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCccCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHh----CCCHHHhHHHhHHHhhhhhhhhhHh
Confidence 57889999999999999999999 999999999999999 9999999999999999999977654
No 28
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.78 E-value=2.1e-19 Score=122.80 Aligned_cols=57 Identities=35% Similarity=0.466 Sum_probs=55.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHH
Q 027068 92 ARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 153 (229)
Q Consensus 92 rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr 153 (229)
++.|+.||..|+.+||..|..+ +||+..++.+||..| ||++.+|++||||||+|+||
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQK-QYLSIAERAEFSSSL----SLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcC-CCcCHHHHHHHHHHH----CcCHHHhhhhhhHhhhhhcc
Confidence 5789999999999999999999 999999999999999 99999999999999999987
No 29
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.78 E-value=1.3e-19 Score=127.84 Aligned_cols=64 Identities=28% Similarity=0.436 Sum_probs=60.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhhCC
Q 027068 90 LTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (229)
Q Consensus 90 ~~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~~~ 158 (229)
+.++.|+.|+..|+.+||..|..+ +||+..++.+||..| ||++.+|+|||||||+|+|+..+..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rk~~~~~ 65 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRN-RYPDMSTREEIAVWT----NLTEARVRVWFKNRRAKWRKREEFI 65 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTC-SSCCTTTTTHHHHHT----TSCHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcc-CCCCHHHHHHHHHHH----CcCHHHHHHHHHHHhHHHHHHhhcc
Confidence 467899999999999999999999 999999999999999 9999999999999999999987654
No 30
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=3.6e-19 Score=126.30 Aligned_cols=62 Identities=26% Similarity=0.318 Sum_probs=58.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhh
Q 027068 90 LTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (229)
Q Consensus 90 ~~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~ 156 (229)
..++.|+.|+..|+.+||..|..+ +||+..++.+||..| ||++.+|+|||||||+|+|+...
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFETQ-KYLSPPERKRLAKML----QLSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcC-CCcCHHHHHHHHHHH----CCCHHHhhHhhHhhHhhcCCCCC
Confidence 467789999999999999999999 999999999999999 99999999999999999998764
No 31
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.77 E-value=2.5e-19 Score=123.38 Aligned_cols=58 Identities=31% Similarity=0.436 Sum_probs=55.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHH
Q 027068 92 ARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (229)
Q Consensus 92 rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~ 154 (229)
+|.|+.||..|+.+||..|..+ +||+..++.+||..| ||++.+|++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKE-NYVSRPRRCELAAQL----NLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHH----CcCHHHHHHhhHHHHhHhhcc
Confidence 5789999999999999999999 999999999999999 999999999999999999985
No 32
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.77 E-value=1.5e-19 Score=131.97 Aligned_cols=61 Identities=18% Similarity=0.187 Sum_probs=56.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhh-----cCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHH
Q 027068 87 SQKLTARQRWTPTPAQLQILEHVYDE-----CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 153 (229)
Q Consensus 87 ~~~~~rr~Rt~~t~~Ql~~Le~~F~~-----~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr 153 (229)
...+.+|.||.||.+|+.+|| .|.. + +||+..+|.+||..| ||++.+|+|||||||+|+|+
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~-~yp~~~~r~~La~~l----gL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 13 SGGTTKRFRTKFTAEQKEKML-AFAERLGWRI-QKHDDVAVEQFCAET----GVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCC-CSSTTHHHHHHHHHS----CCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCCccCCHHHHHHHH-HHHHHcCcCC-CCCCHHHHHHHHHHh----CcCcCcccccccccccCCCC
Confidence 345678899999999999999 7999 8 999999999999999 99999999999999999875
No 33
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.77 E-value=2.2e-19 Score=131.01 Aligned_cols=64 Identities=30% Similarity=0.403 Sum_probs=54.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhh
Q 027068 88 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (229)
Q Consensus 88 ~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~ 156 (229)
.+..+|.|+.|+..|+.+||..|..+ +||+..+|.+||..| ||++.+|+|||||||+|+||..+
T Consensus 17 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~ 80 (81)
T 1b8i_A 17 NGLRRRGRQTYTRYQTLELEKEFHTN-HYLTRRRRIEMAHAL----SLTERQIKIWFQNRRMKLKKEIQ 80 (81)
T ss_dssp -------CCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHTTC-
T ss_pred CCCCCCCCcccCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHh----CCCHHHHHHHhHHhhhhhhhhcc
Confidence 34578899999999999999999999 999999999999999 99999999999999999998653
No 34
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.77 E-value=1.9e-19 Score=126.26 Aligned_cols=62 Identities=24% Similarity=0.342 Sum_probs=58.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhh
Q 027068 90 LTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (229)
Q Consensus 90 ~~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~ 156 (229)
+.++.|+.||..|+.+||..|..+ +||+..++.+||..| ||++.+|++||||||+|+|++..
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~ 63 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAAN-PRPDALMKEQLVEMT----GLSPRVIRVWFQNKRCKDKKRSI 63 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHC-SCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHCSSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcC-CCcCHHHHHHHHHHH----CcCHHHHHHHhHHHHHHHhHHhh
Confidence 367899999999999999999999 999999999999999 99999999999999999988653
No 35
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.77 E-value=4.4e-19 Score=127.00 Aligned_cols=65 Identities=29% Similarity=0.438 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhhC
Q 027068 88 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (229)
Q Consensus 88 ~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~~ 157 (229)
.++.++.|+.|+..|+.+||..|..+ +||+..++.+||..| ||++.+|+|||||||+|+|+..+.
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~r~ 70 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKT-HYPDVYAREQLAMRT----DLTEARVQVWFQNRRAKWRKRERF 70 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHh----CCCHHHHHHHhHHHHHHHHHHHhh
Confidence 34578899999999999999999999 999999999999999 999999999999999999987654
No 36
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.6e-19 Score=128.05 Aligned_cols=61 Identities=23% Similarity=0.379 Sum_probs=58.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHh
Q 027068 90 LTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQ 155 (229)
Q Consensus 90 ~~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~ 155 (229)
..++.|+.|+..|+.+||..|..+ +||+..++.+||..| ||++.+|+|||||||+|+|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 6 SGRKPRTIYSSFQLAALQRRFQKT-QYLALPERAELAASL----GLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHS----SCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHcCC-CCCCHHHHHHHHHHh----CCCHHHHHHHHHHHhhhhcccC
Confidence 478899999999999999999999 999999999999999 9999999999999999998854
No 37
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.77 E-value=7.5e-19 Score=125.28 Aligned_cols=62 Identities=24% Similarity=0.356 Sum_probs=57.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhhCC
Q 027068 92 ARQRWTPTPAQLQILEHVYDE-CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (229)
Q Consensus 92 rr~Rt~~t~~Ql~~Le~~F~~-~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~~~ 158 (229)
.++|+.|+..|+.+||..|.. + +||+..+|.+||..| ||++.+|+|||||||+|+|+.....
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~-~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~rk~~~~~ 64 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVN-KHPDPTTLCLIAAEA----GLTEEQTQKWFKQRLAEWRRSEGLP 64 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCccCCHHHHHHHHHHHHccC-CCCCHHHHHHHHHHH----CcCHHHhhHHhHHHHHHHhhhccCC
Confidence 467899999999999999996 8 999999999999999 9999999999999999999977543
No 38
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.76 E-value=9.3e-19 Score=125.19 Aligned_cols=63 Identities=25% Similarity=0.404 Sum_probs=58.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhhCC
Q 027068 91 TARQRWTPTPAQLQILEHVYDE-CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (229)
Q Consensus 91 ~rr~Rt~~t~~Ql~~Le~~F~~-~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~~~ 158 (229)
.++.|+.|+..|+.+||..|.. + +||+..+|.+||..| ||++.+|+|||||||+|+|+.....
T Consensus 2 ~~k~Rt~ft~~Q~~~Le~~F~~~~-~yp~~~~r~~LA~~~----~l~~~qV~~WFqNRR~k~rk~~~~~ 65 (73)
T 2hi3_A 2 SAQTVSGPTEDQVEILEYNFNKVN-KHPDPTTLCLIAAEA----GLTEEQTQKWFKQRLAEWRRSEGLP 65 (73)
T ss_dssp CCSCCSSCCHHHHHHHHHHHHHTT-SSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHhccCC
Confidence 3578999999999999999995 8 999999999999999 9999999999999999999987543
No 39
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.76 E-value=4.5e-19 Score=124.64 Aligned_cols=62 Identities=32% Similarity=0.526 Sum_probs=58.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhhC
Q 027068 91 TARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (229)
Q Consensus 91 ~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~~ 157 (229)
.++.|+.|+..|+.+||..|..+ +||+..++.+||..| ||++.+|++||||||+|+|+....
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRVN-CYPGIDILEDLAQKL----NLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred CcCCCCCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHH----CcCHHHhhHhhHhHHHHHhHhchh
Confidence 36889999999999999999999 999999999999999 999999999999999999986654
No 40
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=5.4e-19 Score=128.45 Aligned_cols=68 Identities=22% Similarity=0.331 Sum_probs=60.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcC---CCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhhCC
Q 027068 87 SQKLTARQRWTPTPAQLQILEHVYDECK---GTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (229)
Q Consensus 87 ~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~---~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~~~ 158 (229)
..++.+|.||.|+..|+.+||.+|+.++ +||+..+|.+||..| ||++.+|+|||||||+|+|+.....
T Consensus 4 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~l----gL~~~qV~vWFqNrR~k~rk~~~~~ 74 (80)
T 2da4_A 4 GSSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATEL----NVDCEIVRTWIGNRRRKYRLMGIEV 74 (80)
T ss_dssp CCCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHh----CCCHHHhhHhHHHHHHHHhhccCCC
Confidence 3456789999999999999999998872 799999999999999 9999999999999999999865443
No 41
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.76 E-value=3.6e-19 Score=131.71 Aligned_cols=63 Identities=27% Similarity=0.362 Sum_probs=55.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHh
Q 027068 88 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQ 155 (229)
Q Consensus 88 ~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~ 155 (229)
.+..+|.|+.|+..|+.+||..|..+ +||+..+|.+||..| ||++.+|+|||||||+|+|+..
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFN-RYLTRRRRIEIAHAL----SLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHh----CcCHHHhhHHhHHHHHHhHhhc
Confidence 34578899999999999999999999 999999999999999 9999999999999999999864
No 42
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.76 E-value=4.4e-19 Score=122.14 Aligned_cols=58 Identities=26% Similarity=0.485 Sum_probs=50.5
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhh
Q 027068 94 QRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (229)
Q Consensus 94 ~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~ 156 (229)
+|+.||..|+.+||..|..+ +||+..++.+||..| ||++.+|++||||||+|+|+..+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRT-HYPDVFTREELAMKI----GLTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHC----
T ss_pred CCcccCHHHHHHHHHHHHcC-CCcCHHHHHHHHHHH----CcCHHHHHHHhhhhhhhhHhhcc
Confidence 58999999999999999999 999999999999999 99999999999999999998653
No 43
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=9.6e-19 Score=131.70 Aligned_cols=65 Identities=28% Similarity=0.356 Sum_probs=57.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhhC
Q 027068 88 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (229)
Q Consensus 88 ~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~~ 157 (229)
....++.|+.|+..|+.+||..|..+ +||+..+|.+||..| ||++.+|+|||||||+|+|+..+.
T Consensus 31 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~~ 95 (97)
T 1b72_A 31 LGSPSGLRTNFTTRQLTELEKEFHFN-KYLSRARRVEIAATL----ELNETQVKIWFQNRRMKQKKRERE 95 (97)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHh----CCCHHHhHHHHHHHhHHHhHHhcc
Confidence 34578899999999999999999999 999999999999999 999999999999999999998754
No 44
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.75 E-value=9.1e-19 Score=119.16 Aligned_cols=57 Identities=26% Similarity=0.359 Sum_probs=54.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHH
Q 027068 91 TARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLK 152 (229)
Q Consensus 91 ~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~K 152 (229)
.++.|+.|+..|+.+||..|..+ +||+..++.+||..| ||++.+|++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQ-RYLSAPERDQLASVL----KLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHh----CcCHHHHHHhhHHhhccCC
Confidence 46789999999999999999999 999999999999999 9999999999999999975
No 45
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=1.7e-18 Score=129.80 Aligned_cols=65 Identities=26% Similarity=0.488 Sum_probs=61.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCC---------------CcccchhehhhhhhhHHHH
Q 027068 89 KLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQ---------------ISETNVYNWFQNRRARLKR 153 (229)
Q Consensus 89 ~~~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~g---------------ls~~qV~vWFQNRRak~Kr 153 (229)
++.+|.|+.|+..|+.+||..|+.+ +||+..+|++||..| + |++.+|+|||||||+|+|+
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~~-~yP~~~~r~~lA~~l----~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr 79 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNEN-QYPDEAKREEIANAC----NAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKR 79 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----HHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHH----CchhhcccccccccCcCCHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999 999999999999999 8 9999999999999999999
Q ss_pred HhhCC
Q 027068 154 KQSGV 158 (229)
Q Consensus 154 ~~~~~ 158 (229)
+....
T Consensus 80 ~~~~~ 84 (95)
T 2cuf_A 80 RANIA 84 (95)
T ss_dssp HHHCC
T ss_pred Hhhcc
Confidence 88764
No 46
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.74 E-value=8.1e-19 Score=120.99 Aligned_cols=59 Identities=20% Similarity=0.371 Sum_probs=48.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHH
Q 027068 89 KLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLK 152 (229)
Q Consensus 89 ~~~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~K 152 (229)
++.++.|+.|+..|+.+||..|..+ +||+..++.+||..| ||++.+|+|||||||+|+|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~-~yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRK-QSLNSKEKEEVAKKC----GITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhC-CCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhccC
Confidence 3567899999999999999999999 999999999999999 9999999999999999975
No 47
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2.5e-18 Score=123.67 Aligned_cols=61 Identities=18% Similarity=0.451 Sum_probs=56.6
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhhCC
Q 027068 93 RQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (229)
Q Consensus 93 r~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~~~ 158 (229)
++|..||..|+.+||..|..+ +||+..+|.+||..| ||++.+|+|||||||+|+|++....
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kk~~~~~ 69 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQN-PLPLDEELDRLRSET----KMTRREIDSWFSERRKKVNAEETKK 69 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----CCCHHHHHHHHHHHTTHHHHSSCSS
T ss_pred CCCccCCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHh----CCCHHHhhHhhHHHHHHHHHhhhcc
Confidence 456779999999999999999 999999999999999 9999999999999999999976553
No 48
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.74 E-value=1.3e-18 Score=118.23 Aligned_cols=54 Identities=22% Similarity=0.375 Sum_probs=50.9
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHH
Q 027068 96 WTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (229)
Q Consensus 96 t~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~ 154 (229)
|.|+..|+.+||..|..+ +||+..+|.+||..| ||++.+|+|||||||+|+||+
T Consensus 2 T~ft~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQ-KYLASAERAALAKAL----RMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhc-CCcCHHHHHHHHHHh----CcCHHHhhHhhHHhhhhhccc
Confidence 679999999999999999 999999999999999 999999999999999999985
No 49
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.74 E-value=1.2e-18 Score=131.06 Aligned_cols=64 Identities=19% Similarity=0.375 Sum_probs=56.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHh
Q 027068 87 SQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQ 155 (229)
Q Consensus 87 ~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~ 155 (229)
+....+|.|+.|+..|+.+||..|..+ +||+..+|.+||..| ||++.+|+|||||||+|+|+.+
T Consensus 21 ~~~~~~r~Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 21 PKSGSTGKICKKTPEQLHMLKSAFVRT-QWPSPEEYDKLAKES----GLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp ------CCSSSSCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHh----CCCHHHeeecchhhhhHhhhhc
Confidence 344567899999999999999999999 999999999999999 9999999999999999999854
No 50
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2e-18 Score=124.40 Aligned_cols=62 Identities=18% Similarity=0.320 Sum_probs=57.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhhC
Q 027068 91 TARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (229)
Q Consensus 91 ~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~~ 157 (229)
+.+.|+.||..|+.+||..|..+ +||+..+|.+||..| ||++.+|+|||||||+|+|+....
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~-~yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~k~kk~~~~ 69 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRN-QFPGQSEVEHLTKVT----GLSTREVRKWFSDRRYHCRNLKGS 69 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHS-SSCCSHHHHHHHHHH----CCCHHHHHHHHHHHHHHSSSCCSS
T ss_pred CCCCCccCCHHHHHHHHHHHhcC-CCcCHHHHHHHHHHh----CCChHHhhHHhHHHhHHHHHhccc
Confidence 44568999999999999999999 999999999999999 999999999999999999986654
No 51
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.73 E-value=3.3e-18 Score=122.34 Aligned_cols=62 Identities=19% Similarity=0.283 Sum_probs=58.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhhC
Q 027068 91 TARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (229)
Q Consensus 91 ~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~~ 157 (229)
.++.|+.|+..|+.+||..|..+ +||+..++.+||..| ||++.+|+|||||||+|+|+.+..
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~~ 67 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKN-QFPHDSEIIRLMKIT----GLTKGEIKKWFSDTRYNQRNSKSN 67 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHTTTTTCS
T ss_pred CCCCCcCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHh----CcCHHHeeeCChhHhHHHHhhCcC
Confidence 56889999999999999999999 999999999999999 999999999999999999986654
No 52
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=2.4e-18 Score=124.32 Aligned_cols=60 Identities=23% Similarity=0.390 Sum_probs=55.7
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhhC
Q 027068 93 RQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (229)
Q Consensus 93 r~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~~ 157 (229)
..|+.||.+|+.+||..|..+ +||+..+|++||..| ||++.+|+|||||||+|+|+....
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~-~YPs~~er~~LA~~t----gLte~qIkvWFqNrR~k~Kk~~l~ 64 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQC-QWARREDYQKLEQIT----GLPRPEIIQWFGDTRYALKHGQLK 64 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHHTCCS
T ss_pred CCCCCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHH----CcCHHHhhHHhHhhHHHHHHHHHH
Confidence 456679999999999999999 999999999999999 999999999999999999986554
No 53
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=6e-18 Score=120.78 Aligned_cols=64 Identities=16% Similarity=0.253 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhh---cCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhhC
Q 027068 89 KLTARQRWTPTPAQLQILEHVYDE---CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (229)
Q Consensus 89 ~~~rr~Rt~~t~~Ql~~Le~~F~~---~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~~ 157 (229)
++.++.|+.|+..|+.+||.+|.. + +||+..++.+||..| ||++.+|+|||||||+|+|+....
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~-~yp~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk~~~~ 71 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGH-PYPTEDEKKQIAAQT----NLTLLQVNNWFINARRRILQSGPS 71 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTS-CCCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCC-CCCCHHHHHHHHHHH----CcCHHHHHHHhHHHHhhccccccc
Confidence 357788999999999999999987 6 999999999999999 999999999999999999986543
No 54
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.73 E-value=5.5e-18 Score=120.99 Aligned_cols=62 Identities=23% Similarity=0.402 Sum_probs=57.8
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhhC
Q 027068 91 TARQRWTPTPAQLQILEHVY---DECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (229)
Q Consensus 91 ~rr~Rt~~t~~Ql~~Le~~F---~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~~ 157 (229)
++|.|+.|+..|+.+||..| ..+ +||+..++..||..| ||++.+|+|||||||+|+|+....
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~~~~~-~yP~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYSHLSN-PYPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHTTTS-CCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccC-CCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhhccccccc
Confidence 36889999999999999999 788 999999999999999 999999999999999999986654
No 55
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=7.5e-18 Score=127.99 Aligned_cols=70 Identities=34% Similarity=0.547 Sum_probs=62.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH-------------hhC----CCcccchhehhhhhhhH
Q 027068 88 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELA-------------KHG----QISETNVYNWFQNRRAR 150 (229)
Q Consensus 88 ~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~-------------~~~----gls~~qV~vWFQNRRak 150 (229)
.++.||.|+.|++.|+.+||..|+.+ +||+..+|++||..|. .|| +|++.+|+|||||||++
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~-~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k 81 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQ-KNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 81 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCC-CCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHH
Confidence 34578899999999999999999999 9999999999999993 244 79999999999999999
Q ss_pred HHHHhhCC
Q 027068 151 LKRKQSGV 158 (229)
Q Consensus 151 ~Kr~~~~~ 158 (229)
+|++++..
T Consensus 82 ~kr~~~~~ 89 (102)
T 2da6_A 82 EAFRQKLA 89 (102)
T ss_dssp HHHHHHHH
T ss_pred HHHhhHhh
Confidence 99987653
No 56
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=1.4e-17 Score=123.92 Aligned_cols=57 Identities=14% Similarity=0.376 Sum_probs=53.6
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhhCC
Q 027068 97 TPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (229)
Q Consensus 97 ~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~~~ 158 (229)
.||..||.+||..|..+ +||+..+|.+||..| ||++.+|+|||||||+|+|++.+..
T Consensus 17 ~~t~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l----gLte~qVkvWFqNRR~k~rk~~~~~ 73 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNS-SVLTDEELNRLRAQT----KLTRREIDAWFTEKKKSKALKEEKM 73 (89)
T ss_dssp CCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHSCCSCC
T ss_pred cCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHh----CcChHHCeecccccchHHHHHHHHh
Confidence 78999999999999999 999999999999999 9999999999999999998866543
No 57
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.71 E-value=3.9e-18 Score=118.71 Aligned_cols=58 Identities=21% Similarity=0.360 Sum_probs=55.3
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHH
Q 027068 91 TARQRWTPTPAQLQILEHVY---DECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 153 (229)
Q Consensus 91 ~rr~Rt~~t~~Ql~~Le~~F---~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr 153 (229)
.++.|+.|+..|+.+||.+| ..+ +||+..++.+||..| ||++.+|++||||||+|+||
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~-~yp~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSN-PYPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTS-CCCCHHHHHHHHHHH----TSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhcc
Confidence 57889999999999999999 788 999999999999999 99999999999999999876
No 58
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.70 E-value=3.3e-17 Score=120.10 Aligned_cols=65 Identities=18% Similarity=0.273 Sum_probs=59.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhc--CCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhhCC
Q 027068 90 LTARQRWTPTPAQLQILEHVYDEC--KGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (229)
Q Consensus 90 ~~rr~Rt~~t~~Ql~~Le~~F~~~--~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~~~ 158 (229)
+.++.|+.|+..|+.+||.+|..+ ++||+..+|.+||..+ ||++.+|+|||||||+|+|+.....
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~----gLs~~qV~~WFqNrR~r~k~~~~~~ 72 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKT----NLSLLQISNWFINARRRILPDMLQQ 72 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHTHHHHTCC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH----CcCHHHhhHHhhhhHhhhcHHHHHh
Confidence 467889999999999999999873 3999999999999999 9999999999999999999876654
No 59
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.70 E-value=1.5e-17 Score=122.50 Aligned_cols=61 Identities=23% Similarity=0.405 Sum_probs=56.7
Q ss_pred CCCCCCCCHHHHHHHHHHH---hhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhhC
Q 027068 92 ARQRWTPTPAQLQILEHVY---DECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (229)
Q Consensus 92 rr~Rt~~t~~Ql~~Le~~F---~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~~ 157 (229)
||.|+.|+..|+.+||.+| ..+ +||+..++.+||..| ||++.+|++||||||+|+|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~-~yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSN-PYPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTS-CCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhhhcccc
Confidence 6789999999999999999 788 999999999999999 999999999999999999986644
No 60
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=4.2e-17 Score=121.08 Aligned_cols=58 Identities=22% Similarity=0.432 Sum_probs=54.0
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhhCC
Q 027068 96 WTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (229)
Q Consensus 96 t~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~~~ 158 (229)
..||..||.+||..|..+ +||+..+|.+||..| ||++.+|+|||||||+|+|+.....
T Consensus 18 k~~t~~Ql~~Le~~F~~~-~yp~~~~r~~La~~~----~l~~~qV~vWFqNRR~k~r~~~~~~ 75 (89)
T 2dmp_A 18 KEKTQGQVKILEDSFLKS-SFPTQAELDRLRVET----KLSRREIDSWFSERRKLRDSMEQAV 75 (89)
T ss_dssp CCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHTSCSCC
T ss_pred ccCCHHHHHHHHHHHccC-CCCCHHHHHHHHHHh----CCCHHhccHhhHhHHHHHHHHhHhh
Confidence 348999999999999999 999999999999999 9999999999999999998866654
No 61
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.70 E-value=1.4e-17 Score=114.39 Aligned_cols=56 Identities=20% Similarity=0.332 Sum_probs=53.2
Q ss_pred CCCCCCHHHHHHHHHHHhh---cCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHH
Q 027068 94 QRWTPTPAQLQILEHVYDE---CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (229)
Q Consensus 94 ~Rt~~t~~Ql~~Le~~F~~---~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~ 154 (229)
+|+.|+..|+.+||..|.. + +||+..++.+||..+ ||++.+|++||||||+|+|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~-~yp~~~~r~~La~~~----gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIEN-PYLDTKGLENLMKNT----SLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTS-CCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCC-CCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHcccccC
Confidence 3688999999999999999 7 999999999999999 999999999999999999873
No 62
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=1.4e-17 Score=117.23 Aligned_cols=59 Identities=22% Similarity=0.371 Sum_probs=55.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHH
Q 027068 88 QKLTARQRWTPTPAQLQILEHVYDE-CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARL 151 (229)
Q Consensus 88 ~~~~rr~Rt~~t~~Ql~~Le~~F~~-~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~ 151 (229)
.+.++|.||.|+.+||.+|+..|+. + +||+...|..||.+| ||++++|+|||||||--.
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~-~yPd~~~r~~La~~t----GL~~~~IqVWFQNrR~~~ 63 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVG-LYPDQEAIHTLSAQL----DLPKHTIIKFFQNQRYHV 63 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHC-SCCCHHHHHHHHHHS----CCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHh----CCCHHHHHHhhccceeee
Confidence 3457899999999999999999999 8 999999999999999 999999999999999653
No 63
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.69 E-value=6.5e-18 Score=128.00 Aligned_cols=69 Identities=30% Similarity=0.467 Sum_probs=53.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhh--------------CC---CcccchhehhhhhhhH
Q 027068 88 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKH--------------GQ---ISETNVYNWFQNRRAR 150 (229)
Q Consensus 88 ~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~--------------~g---ls~~qV~vWFQNRRak 150 (229)
.++.||.|+.|+..|+.+||..|+.+ +||+..+|++||..+... .| |++.+|+|||||||++
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~-~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k 84 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQ-KNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 84 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHH
Confidence 35678999999999999999999999 999999999999992100 18 9999999999999999
Q ss_pred HHHHhhC
Q 027068 151 LKRKQSG 157 (229)
Q Consensus 151 ~Kr~~~~ 157 (229)
+|+++..
T Consensus 85 ~k~k~~~ 91 (99)
T 1lfb_A 85 EAFRHKL 91 (99)
T ss_dssp TSCCC--
T ss_pred HHHhchh
Confidence 8776544
No 64
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.68 E-value=8.8e-18 Score=120.14 Aligned_cols=60 Identities=18% Similarity=0.340 Sum_probs=54.2
Q ss_pred CCCCCCCCCHHHHHHHHHHH-hhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHh
Q 027068 91 TARQRWTPTPAQLQILEHVY-DECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQ 155 (229)
Q Consensus 91 ~rr~Rt~~t~~Ql~~Le~~F-~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~ 155 (229)
..+.|..++..|+.+||..| ..+ +||+..+|.+||..| ||++.+|+|||||||+|+|+..
T Consensus 8 g~k~r~r~~~~ql~~LE~~F~~~~-~yp~~~~r~~LA~~l----~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 8 GIKDSPVNKVEPNDTLEKVFVSVT-KYPDEKRLKGLSKQL----DWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCCSCSCSTTHHHHHHHHTC-SSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcC-CCcCHHHHHHHHHHh----CCChhhcchhhhhcccCCCCCC
Confidence 34566678889999999999 888 999999999999999 9999999999999999998643
No 65
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.67 E-value=5.1e-17 Score=119.85 Aligned_cols=58 Identities=19% Similarity=0.318 Sum_probs=55.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhh---cCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHH
Q 027068 90 LTARQRWTPTPAQLQILEHVYDE---CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLK 152 (229)
Q Consensus 90 ~~rr~Rt~~t~~Ql~~Le~~F~~---~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~K 152 (229)
.+++.|+.|+..|+.+||.+|.. + +||+..++.+||..| ||++.+|++||||||+|+|
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~-~yP~~~~r~~La~~~----gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIEN-PYLDTKGLENLMKNT----SLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSS-CCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCC-CCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhhcc
Confidence 45667999999999999999999 8 999999999999999 9999999999999999987
No 66
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.67 E-value=2.3e-17 Score=117.17 Aligned_cols=57 Identities=30% Similarity=0.383 Sum_probs=53.3
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhhC
Q 027068 96 WTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (229)
Q Consensus 96 t~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~~ 157 (229)
..+|..|+..||..|..+ +||+..+|.+||..| ||++++|+|||||||+|+|+++..
T Consensus 9 ~~~t~~ql~~LE~~F~~~-~yp~~~~r~~LA~~l----~Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQ-KYLSAPERAHLAKNL----KLTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHSCCSSSS
T ss_pred CcCCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHh----CCChhheeecchhhhhhhhhhhhh
Confidence 468999999999999999 999999999999999 999999999999999999986644
No 67
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.65 E-value=8e-17 Score=117.92 Aligned_cols=57 Identities=19% Similarity=0.307 Sum_probs=53.1
Q ss_pred CCCCCCCHHHHHHHHHHHhh---cCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHH
Q 027068 93 RQRWTPTPAQLQILEHVYDE---CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (229)
Q Consensus 93 r~Rt~~t~~Ql~~Le~~F~~---~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~ 154 (229)
+.|+.|+..|+.+||.+|.. + +||+..++.+||..| ||++.+|+|||||||+|+|+.
T Consensus 4 krr~rft~~q~~~Le~~f~~h~~~-~yP~~~~r~~La~~~----gLt~~qV~~WFqNrR~r~kk~ 63 (83)
T 1le8_B 4 YRGHRFTKENVRILESWFAKNIEN-PYLDTKGLENLMKNT----SLSRIQIKNWVAARRAKEKTI 63 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHTSSS-CCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCC-CCcCHHHHHHHHHHH----CCCHHHcccccHHHHcccccc
Confidence 45666999999999999999 8 999999999999999 999999999999999999875
No 68
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.65 E-value=7.9e-17 Score=113.02 Aligned_cols=52 Identities=17% Similarity=0.371 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHh
Q 027068 99 TPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQ 155 (229)
Q Consensus 99 t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~ 155 (229)
+..||.+||..|..+ +||+..+|.+||..| ||++.+|++||||||+|+|+-.
T Consensus 12 ~~~Ql~~LE~~F~~~-~YPs~~er~eLA~~t----gLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 12 TKEQIAHLKASFLQS-QFPDDAEVYRLIEVT----GLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CHHHHHHHHHHHHGG-GSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcC-CCCCHHHHHHHHHHh----CcCHHHhhHhcccchhhhhccC
Confidence 689999999999999 999999999999999 9999999999999999999743
No 69
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=5.9e-17 Score=113.33 Aligned_cols=54 Identities=17% Similarity=0.335 Sum_probs=50.2
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHH
Q 027068 95 RWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 153 (229)
Q Consensus 95 Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr 153 (229)
+..++..|+.+||..|..+ +||+..+|.+||..| ||++++|+|||||||+|.++
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l----~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALN-AQPSAEELSKIADSV----NLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTCSC
T ss_pred CCCccHHHHHHHHHHHhcC-CCcCHHHHHHHHHHh----CcChhhcCcchhcccCCCCC
Confidence 3456799999999999999 999999999999999 99999999999999998765
No 70
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.65 E-value=3.1e-17 Score=138.09 Aligned_cols=127 Identities=20% Similarity=0.267 Sum_probs=78.5
Q ss_pred hhhhhcccccCcCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchh-----hhcCCCCCCCCCCCccCCCC
Q 027068 14 MERQFQQDGGDTSNGLCVKVMTDEQMELLRKQIAVYAMICEQLVQMHKVFSAQNE-----IAGMRMGNPYFDPFVASGSQ 88 (229)
Q Consensus 14 ~~~~~q~~~~~~~~~~~~~~~t~~q~~~lr~qi~~~~~ic~q~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~~ 88 (229)
..+.+|++++..+| +|+..|+++..........+. ..+..|+..... +.....+..........+..
T Consensus 41 ~~gitQ~~lA~~~G------iSqs~ISr~l~~~~~~~~~kr--aaly~W~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 112 (194)
T 1ic8_A 41 QHNIPQREVVDTTG------LNQSHLSQHLNKGTPMKTQKR--AALYTWYVRKQREVAQQFTHAGQGGLIEEPTGDELPT 112 (194)
T ss_dssp HTTCCHHHHHHHHC------CCHHHHHHHHHSBCCCCHHHH--HHHHHHHHHHTTTTHHHHCCC----------------
T ss_pred HcCCCHHHHHHHhC------CChHHHHHHHhcCcccccccc--ccchhhHHHhhhhhhccccCCCCCCCCCCCccccccc
Confidence 34667777776664 788888888654433333222 222333322211 11111111111111122344
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCC---------------------Ccccchhehhhhh
Q 027068 89 KLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQ---------------------ISETNVYNWFQNR 147 (229)
Q Consensus 89 ~~~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~g---------------------ls~~qV~vWFQNR 147 (229)
++.||.|+.|++.|+.+||..|+.+ +||+..+|++||..| + |++.+|+||||||
T Consensus 113 ~k~rr~R~~ft~~ql~~Le~~F~~~-~yp~~~~Re~la~~~----~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNR 187 (194)
T 1ic8_A 113 KKGRRNRFKWGPASQQILFQAYERQ-KNPSKEERETLVEEC----NRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANR 187 (194)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHH-CCCCTTTTHHHHHHH----HHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHH
T ss_pred ccCCCCCcccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHh----CchhhccccccccccccccccccCccccchhchhh
Confidence 6778999999999999999999999 999999999999999 7 9999999999999
Q ss_pred hhHHHH
Q 027068 148 RARLKR 153 (229)
Q Consensus 148 Rak~Kr 153 (229)
|++.|.
T Consensus 188 R~~~k~ 193 (194)
T 1ic8_A 188 RKEEAF 193 (194)
T ss_dssp HHHCC-
T ss_pred hhhhhc
Confidence 999875
No 71
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.63 E-value=8.2e-17 Score=112.63 Aligned_cols=49 Identities=22% Similarity=0.500 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHH
Q 027068 100 PAQLQILEHVYD-ECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 153 (229)
Q Consensus 100 ~~Ql~~Le~~F~-~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr 153 (229)
+.++.+||..|. .+ +||+..+|.+||..| ||+++||+|||||||+|+|+
T Consensus 9 ~~~~~~LE~~F~~~~-~yp~~~~r~~LA~~l----~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 9 AQPNAILEKVFTAIT-KHPDEKRLEGLSKQL----DWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SCHHHHHHHHHHTTC-SSCCHHHHHHHHHHH----CSCHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHcC-CCcCHHHHHHHHHHh----CCCHHHHHHHHHHHHhccCC
Confidence 457999999995 56 999999999999999 99999999999999999876
No 72
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.61 E-value=2.8e-16 Score=128.45 Aligned_cols=65 Identities=23% Similarity=0.279 Sum_probs=54.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhhC
Q 027068 88 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (229)
Q Consensus 88 ~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~~ 157 (229)
..+.+|.|+.|+..|+.+||..|..+ +||+..+|.+||..| ||++.+|+|||||||+|+|+....
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~la~~l----~L~~~qV~~WFqNrR~r~k~~~~~ 158 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKEN-KRPSKELQITISQQL----GLELSTVSNFFMNARRRSLDKWLE 158 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTSSCC---
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHH----CcCHHHhhhcChhhhccccccCCC
Confidence 34578899999999999999999999 999999999999999 999999999999999998875443
No 73
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.55 E-value=2.5e-15 Score=105.77 Aligned_cols=56 Identities=16% Similarity=0.251 Sum_probs=50.0
Q ss_pred CCCHHHHHHHHHHHh---hcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhhC
Q 027068 97 TPTPAQLQILEHVYD---ECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (229)
Q Consensus 97 ~~t~~Ql~~Le~~F~---~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~~ 157 (229)
.|+.+|+.+|+.+|. .+ +||+..++.+||..+ ||++.+|++||||||+|.|+....
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~-pyp~~~~r~~La~~~----~l~~~qV~~WFqNrR~r~kk~~~~ 62 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTH-PYPSEEQKKQLAQDT----GLTILQVNNWFINARRRIVQPMID 62 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTS-CCCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHSCC--
T ss_pred cCCHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHh----CcCHHHhhhhhHHHHHHHhHHHHH
Confidence 689999999999999 88 999999999999999 999999999999999999886543
No 74
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.44 E-value=4.7e-14 Score=120.38 Aligned_cols=65 Identities=35% Similarity=0.593 Sum_probs=53.6
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh-------------h----CCCcccchhehhhhhh
Q 027068 86 GSQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAK-------------H----GQISETNVYNWFQNRR 148 (229)
Q Consensus 86 ~~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~-------------~----~gls~~qV~vWFQNRR 148 (229)
+..++.||.|+.|++.|+.+||..|+.+ +||+..+|++||..|.. | ..|++.+|+|||||||
T Consensus 137 ~~~~k~RR~R~~ft~~ql~~Le~~F~~~-~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR 215 (221)
T 2h8r_A 137 PTNKKMRRNRFKWGPASQQILYQAYDRQ-KNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRR 215 (221)
T ss_dssp -----CCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHH
T ss_pred cccCCCCCCCcCCCHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhh
Confidence 3456788999999999999999999999 99999999999999821 0 1289999999999999
Q ss_pred hHH
Q 027068 149 ARL 151 (229)
Q Consensus 149 ak~ 151 (229)
++.
T Consensus 216 ~~~ 218 (221)
T 2h8r_A 216 KEE 218 (221)
T ss_dssp TTC
T ss_pred hhh
Confidence 874
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1e-13 Score=98.02 Aligned_cols=46 Identities=15% Similarity=0.427 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhH
Q 027068 100 PAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 150 (229)
Q Consensus 100 ~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak 150 (229)
.+|+..||.+|..+ ++|+..++..||..+ ||+.++|+|||||||+.
T Consensus 14 k~ql~~Lk~yF~~n-~~Ps~eei~~LA~~l----gL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMN-MEPNSDELLKISIAV----GLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHHHHh----CCCHHHHHHHHhhcccc
Confidence 57899999999999 999999999999999 99999999999999984
No 76
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.34 E-value=7.1e-13 Score=98.21 Aligned_cols=57 Identities=26% Similarity=0.328 Sum_probs=52.3
Q ss_pred CCCCHHHHHHHHHHHhh---cCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhhC
Q 027068 96 WTPTPAQLQILEHVYDE---CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (229)
Q Consensus 96 t~~t~~Ql~~Le~~F~~---~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~~ 157 (229)
..|+..++.+|+.+|.. + +||+..++.+||..+ ||++.||++||+|+|.|.++...+
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~n-pYPs~~ek~~LA~~t----gLt~~QV~~WF~NrR~R~kk~~~~ 69 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYN-AYPSEQEKALLSQQT----HLSTLQVCNWFINARRRLLPDMLR 69 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGG-GSCCHHHHHHHHHHS----SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhhhHHHH
Confidence 46889999999999987 6 999999999999999 999999999999999999886543
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.24 E-value=1.9e-12 Score=117.17 Aligned_cols=56 Identities=21% Similarity=0.353 Sum_probs=52.8
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHH
Q 027068 92 ARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLK 152 (229)
Q Consensus 92 rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~K 152 (229)
++.|+.++..|+..||+.|+.+ +||+..+|.+||..| ||+++||+|||||||+|+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~-~yp~~~~~~~la~~~----~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRK-QSLNSKEKEEVAKKC----GITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcC-CCcCHHHHHHHHHHH----CcCHHHhhHhhhhcccccC
Confidence 4567889999999999999999 999999999999999 9999999999999999875
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.66 E-value=2.6e-09 Score=66.42 Aligned_cols=20 Identities=35% Similarity=0.697 Sum_probs=18.1
Q ss_pred cchhehhhhhhhHHHHHhhC
Q 027068 138 TNVYNWFQNRRARLKRKQSG 157 (229)
Q Consensus 138 ~qV~vWFQNRRak~Kr~~~~ 157 (229)
+||+|||||||+|+|++...
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~ 20 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFN 20 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHH
T ss_pred CCceeccHHHHHHHHHHhHH
Confidence 58999999999999998775
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.88 E-value=0.06 Score=37.56 Aligned_cols=39 Identities=23% Similarity=0.497 Sum_probs=35.7
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhh
Q 027068 103 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQN 146 (229)
Q Consensus 103 l~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQN 146 (229)
...|+.+|... +.+...+...|+.+. +|+-.+|+.||--
T Consensus 18 ~e~L~~Yy~~h-k~L~EeDl~~L~~ks----kms~qqvkdwFa~ 56 (70)
T 2ys9_A 18 IQPLERYWAAH-QQLRETDIPQLSQAS----RLSTQQVLDWFDS 56 (70)
T ss_dssp CHHHHHHHHHT-CCCCTTHHHHHHHHT----TCCHHHHHHHHHH
T ss_pred chHHHHHHHHh-cccchhhHHHHHHHh----CCCHHHHHHHHHh
Confidence 46899999999 899999999999998 9999999999953
No 80
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=71.09 E-value=6.4 Score=29.00 Aligned_cols=50 Identities=20% Similarity=0.236 Sum_probs=38.2
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHH
Q 027068 94 QRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARL 151 (229)
Q Consensus 94 ~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~ 151 (229)
+|..||.++...+-..+..+ ..+.. .+||..+ |++...|..|..++....
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~-g~~~~---~~~A~~~----gvs~stl~~~~~~~~~~~ 53 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEEN-PDLRK---GEIARRF----NIPPSTLSTILKNKRAIL 53 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHC-TTSCH---HHHHHHH----TCCHHHHHHHHHTHHHHH
T ss_pred cceeCCHHHHHHHHHHHHHC-CCCcH---HHHHHHh----CCCHHHHHHHHhchhhhc
Confidence 57789999988777777555 44443 3688999 999999999998776543
No 81
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=70.71 E-value=4.4 Score=26.04 Aligned_cols=46 Identities=17% Similarity=0.209 Sum_probs=32.5
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhh
Q 027068 95 RWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQN 146 (229)
Q Consensus 95 Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQN 146 (229)
|..|+.+....+..++... .+......++|..+ ||+...|..|...
T Consensus 3 r~~ys~efK~~~~~~~~~g--~s~~~~~~~vA~~~----gIs~~tl~~W~~~ 48 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND--NDCKGNQRATARKY----NIHRRQIQKWLQC 48 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC--TTTTTCHHHHHHHT----TSCHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHcC--CCcchHHHHHHHHH----CcCHHHHHHHHHH
Confidence 4568888877665555444 33222356899999 9999999999754
No 82
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=68.94 E-value=6 Score=27.53 Aligned_cols=46 Identities=13% Similarity=0.225 Sum_probs=33.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhh
Q 027068 91 TARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQN 146 (229)
Q Consensus 91 ~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQN 146 (229)
.++.+..|+.++....-..+... . ...++|..+ ||+...|+.|...
T Consensus 16 ~~~~~~~ys~e~k~~~v~~~~~g--~----s~~~iA~~~----gIs~sTl~rW~k~ 61 (87)
T 2elh_A 16 GKRPLRSLTPRDKIHAIQRIHDG--E----SKASVARDI----GVPESTLRGWCKN 61 (87)
T ss_dssp CSSCCSSCCHHHHHHHHHHHHHT--C----CHHHHHHHH----TCCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHCC--C----CHHHHHHHH----CcCHHHHHHHHHH
Confidence 34556788998865555566433 2 245889999 9999999999853
No 83
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=59.59 E-value=0.15 Score=40.54 Aligned_cols=30 Identities=3% Similarity=-0.226 Sum_probs=21.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCH
Q 027068 89 KLTARQRWTPTPAQLQILEHVYDECKGTPRK 119 (229)
Q Consensus 89 ~~~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~ 119 (229)
...+|.||.|+..|+.+|+..|+.+ +||..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~-~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQAN-PVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCC-CCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCC-CCccc
Confidence 3467899999999999999999999 89875
No 84
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=58.86 E-value=9.8 Score=26.45 Aligned_cols=48 Identities=13% Similarity=0.174 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHh
Q 027068 98 PTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQ 155 (229)
Q Consensus 98 ~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~ 155 (229)
+++.+..+|.-.|-.. + ...+||..| |++...|+.+...-|.+.|+.-
T Consensus 38 L~~~~r~vl~l~~~~g--~----s~~eIA~~l----gis~~tV~~~l~ra~~~Lr~~l 85 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRG--W----STAQIATDL----GIAEGTVKSRLHYAVRALRLTL 85 (92)
T ss_dssp SCHHHHHHHHHHHTSC--C----CHHHHHHHH----TSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC--C----CHHHHHHHH----CcCHHHHHHHHHHHHHHHHHHH
Confidence 5677778887766555 1 345899999 9999999999887666666543
No 85
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=56.72 E-value=10 Score=22.09 Aligned_cols=40 Identities=8% Similarity=0.132 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhh
Q 027068 97 TPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQN 146 (229)
Q Consensus 97 ~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQN 146 (229)
.++..+...+...+... + + ..+||..| |++...|+.|...
T Consensus 5 ~l~~~~~~~i~~~~~~g--~-s---~~~IA~~l----gis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN--V-S---LHEMSRKI----SRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT--C-C---HHHHHHHH----TCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC--C-C---HHHHHHHH----CcCHHHHHHHHhh
Confidence 46777765555556544 2 2 45889999 9999999999853
No 86
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=52.65 E-value=11 Score=24.14 Aligned_cols=46 Identities=15% Similarity=-0.045 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHH
Q 027068 97 TPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLK 152 (229)
Q Consensus 97 ~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~K 152 (229)
.+++.+..+|...|-.. + ...++|..+ |+++..|+.+...-+.+.+
T Consensus 15 ~L~~~~r~il~l~~~~g--~----s~~eIA~~l----gis~~tv~~~~~ra~~~l~ 60 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG--L----SYADAAAVC----GCPVGTIRSRVARARDALL 60 (70)
T ss_dssp SSCHHHHHHHHHHHTSC--C----CHHHHHHHH----TSCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcC--C----CHHHHHHHH----CcCHHHHHHHHHHHHHHHH
Confidence 36788888888876544 1 245899999 9999999998865555544
No 87
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=46.89 E-value=7.5 Score=23.19 Aligned_cols=41 Identities=10% Similarity=0.235 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhh
Q 027068 98 PTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRR 148 (229)
Q Consensus 98 ~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR 148 (229)
++.++...+...+... . ...+||..| |++...|+.|+....
T Consensus 6 ~~~~~~~~i~~l~~~g---~---s~~~ia~~l----gvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 6 INKHEQEQISRLLEKG---H---PRQQLAIIF----GIGVSTLYRYFPASS 46 (52)
T ss_dssp SCTTHHHHHHHHHHTT---C---CHHHHHHTT----SCCHHHHHHHSCTTC
T ss_pred CCHHHHHHHHHHHHcC---C---CHHHHHHHH----CCCHHHHHHHHHHcc
Confidence 4555555555555433 2 245788898 999999999996543
No 88
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=43.47 E-value=24 Score=25.89 Aligned_cols=47 Identities=19% Similarity=0.315 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHH
Q 027068 98 PTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (229)
Q Consensus 98 ~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~ 154 (229)
+++.+..++.-.|..+ + ...++|..+ |++...|+.|...-|.+.++.
T Consensus 23 L~~~~r~vl~l~y~~g--~----s~~EIA~~l----giS~~tV~~~l~ra~~kLr~~ 69 (113)
T 1s7o_A 23 LTDKQMNYIELYYADD--Y----SLAEIADEF----GVSRQAVYDNIKRTEKILETY 69 (113)
T ss_dssp SCHHHHHHHHHHHHTC--C----CHHHHHHHH----TCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC--C----CHHHHHHHH----CcCHHHHHHHHHHHHHHHHHH
Confidence 6788888888876655 1 235899999 999999999998777666553
No 89
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=43.11 E-value=23 Score=26.11 Aligned_cols=47 Identities=11% Similarity=0.046 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHH
Q 027068 97 TPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (229)
Q Consensus 97 ~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~ 154 (229)
.+++.+..+|. .|-.+ + ...+||..| |++...|+.+...-|.+.|+.
T Consensus 109 ~L~~~~r~v~~-~~~~g--~----s~~EIA~~l----gis~~tV~~~~~ra~~~Lr~~ 155 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIRG--Y----SYREIATIL----SKNLKSIDNTIQRIRKKSEEW 155 (164)
T ss_dssp HSCHHHHHHHH-HHTTT--C----CHHHHHHHH----TCCHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHcC--C----CHHHHHHHH----CCCHHHHHHHHHHHHHHHHHH
Confidence 45666777777 44444 2 345899999 999999999887666666554
No 90
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=42.36 E-value=14 Score=28.69 Aligned_cols=44 Identities=16% Similarity=0.284 Sum_probs=32.7
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHH
Q 027068 103 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLK 152 (229)
Q Consensus 103 l~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~K 152 (229)
+......|... .| ......+||+.. |++...|+..|.|+-.=..
T Consensus 34 l~aa~~lf~~~-G~-~~~tv~~IA~~a----gvs~~t~Y~~F~sK~~Ll~ 77 (215)
T 2qko_A 34 VNAAIEVLARE-GA-RGLTFRAVDVEA----NVPKGTASNYFPSRDDLFD 77 (215)
T ss_dssp HHHHHHHHHHT-CT-TTCCHHHHHHHS----SSTTTCHHHHCSCHHHHHH
T ss_pred HHHHHHHHHHh-Ch-hhccHHHHHHHc----CCCcchHHHhCCCHHHHHH
Confidence 34445567777 54 445677899998 9999999999999766543
No 91
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=39.82 E-value=36 Score=24.30 Aligned_cols=45 Identities=11% Similarity=0.110 Sum_probs=33.5
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhH
Q 027068 95 RWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 150 (229)
Q Consensus 95 Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak 150 (229)
...+++.++.+|.-++ .. +. ..+||..| |+++..|+.+..+=+.|
T Consensus 32 ~~~Lt~re~~Vl~l~~-~G--~s----~~EIA~~L----~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFA-EG--FL----VTEIAKKL----NRSIKTISSQKKSAMMK 76 (99)
T ss_dssp SSSCCHHHHHHHHHHH-HT--CC----HHHHHHHH----TSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH-cC--CC----HHHHHHHH----CcCHHHHHHHHHHHHHH
Confidence 4568999999998765 33 22 35899999 99999999887654433
No 92
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=38.88 E-value=29 Score=22.75 Aligned_cols=50 Identities=12% Similarity=0.195 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHH
Q 027068 97 TPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLK 152 (229)
Q Consensus 97 ~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~K 152 (229)
.+++.+..+|...|-.... ....-.+||..| |++...|+.+...-+.+.+
T Consensus 10 ~L~~~er~il~l~~~l~~~--~~~s~~eIA~~l----~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG--REHTLEEVGAYF----GVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS--SCCCHHHHHHHH----TCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC--CCCCHHHHHHHH----CCCHHHHHHHHHHHHHHHH
Confidence 4688899999888851100 011245899999 9999999998765555544
No 93
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=37.55 E-value=40 Score=23.51 Aligned_cols=45 Identities=16% Similarity=0.192 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHH
Q 027068 97 TPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLK 152 (229)
Q Consensus 97 ~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~K 152 (229)
.+++.+..+|.-+++ . +. ..+||..| |++...|+.+..+-+.|.+
T Consensus 27 ~Lt~~e~~vl~l~~~-g--~s----~~eIA~~l----~is~~tV~~~l~r~~~kL~ 71 (95)
T 3c57_A 27 GLTDQERTLLGLLSE-G--LT----NKQIADRM----FLAEKTVKNYVSRLLAKLG 71 (95)
T ss_dssp CCCHHHHHHHHHHHT-T--CC----HHHHHHHH----TCCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHc-C--CC----HHHHHHHH----CcCHHHHHHHHHHHHHHHc
Confidence 588999999988632 2 22 35899999 9999999988765555443
No 94
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=36.24 E-value=23 Score=22.93 Aligned_cols=49 Identities=6% Similarity=0.120 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHH
Q 027068 97 TPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARL 151 (229)
Q Consensus 97 ~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~ 151 (229)
.+++.+..+|...|-.. .+ ....-.+||..| |++...|+.+...-+.|.
T Consensus 5 ~L~~~er~il~l~~~l~-~~-~g~s~~eIA~~l----gis~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGID-MN-TDYTLEEVGKQF----DVTRERIRQIEAKALRKL 53 (68)
T ss_dssp CCCHHHHHHHHHHTTTT-SS-SCCCHHHHHHHH----TCCHHHHHHHHHHHHHGG
T ss_pred cCCHHHHHHHHHHHccC-CC-CCCCHHHHHHHH----CcCHHHHHHHHHHHHHHH
Confidence 46888889998887321 00 112345899999 999999998775444443
No 95
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=36.14 E-value=47 Score=21.25 Aligned_cols=45 Identities=22% Similarity=0.254 Sum_probs=32.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhH
Q 027068 95 RWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 150 (229)
Q Consensus 95 Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak 150 (229)
-..+++.+..+|.-+ ..+ + ...++|..| |++...|+.+..+-+.|
T Consensus 9 ~~~L~~~e~~il~~~-~~g--~----s~~eIA~~l----~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 9 KPLLTKREREVFELL-VQD--K----TTKEIASEL----FISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCCHHHHHHHHHH-TTT--C----CHHHHHHHH----TSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH-HcC--C----CHHHHHHHH----CCCHHHHHHHHHHHHHH
Confidence 345889999999884 333 2 235899999 99999999887654444
No 96
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=34.43 E-value=37 Score=23.00 Aligned_cols=44 Identities=18% Similarity=0.185 Sum_probs=32.4
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhH
Q 027068 96 WTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 150 (229)
Q Consensus 96 t~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak 150 (229)
..+++.+..+|.-++ .. + ...+||..| |++...|+.+..+-+.|
T Consensus 20 ~~Lt~~e~~vl~l~~-~g--~----s~~eIA~~l----~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 20 NQLTPRERDILKLIA-QG--L----PNKMIARRL----DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GGSCHHHHHHHHHHT-TT--C----CHHHHHHHH----TSCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHH-cC--C----CHHHHHHHH----CcCHHHHHHHHHHHHHH
Confidence 458999999998843 33 2 345899999 99999999877654444
No 97
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=34.06 E-value=33 Score=24.99 Aligned_cols=48 Identities=19% Similarity=0.247 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHh
Q 027068 98 PTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQ 155 (229)
Q Consensus 98 ~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~ 155 (229)
+++.+..+|.-.|-.+ + ...++|..| |+++..|+.+...-|.+.++.-
T Consensus 26 L~~~~r~vl~l~~~~g--~----s~~EIA~~l----giS~~tV~~~l~ra~~kLr~~l 73 (113)
T 1xsv_A 26 LTNKQRNYLELFYLED--Y----SLSEIADTF----NVSRQAVYDNIRRTGDLVEDYE 73 (113)
T ss_dssp SCHHHHHHHHHHHTSC--C----CHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC--C----CHHHHHHHH----CcCHHHHHHHHHHHHHHHHHHH
Confidence 5677888888776555 1 235889999 9999999999887776666543
No 98
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=32.89 E-value=17 Score=27.65 Aligned_cols=43 Identities=21% Similarity=0.337 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhH
Q 027068 101 AQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 150 (229)
Q Consensus 101 ~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak 150 (229)
.-+..-...|... .| . ....+||+.. |++...|+..|.||-.=
T Consensus 19 ~Il~aA~~lf~~~-G~-~-~s~~~IA~~a----gvs~~tlY~~F~sK~~L 61 (194)
T 2q24_A 19 KILAAAVRVFSEE-GL-D-AHLERIAREA----GVGSGTLYRNFPTREAL 61 (194)
T ss_dssp HHHHHHHHHHHHH-CT-T-CCHHHHHHHT----TCCHHHHHHHCCSHHHH
T ss_pred HHHHHHHHHHHhc-Cc-C-CCHHHHHHHh----CCChHHHHHHcCCHHHH
Confidence 3445556668888 77 6 7889999999 99999999999987543
No 99
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=32.07 E-value=37 Score=23.14 Aligned_cols=46 Identities=11% Similarity=0.200 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHHHHhhc----CCCCCHHHHHHHHHHHHhhCCCcccchhehhh
Q 027068 96 WTPTPAQLQILEHVYDEC----KGTPRKQKIQDMTAELAKHGQISETNVYNWFQ 145 (229)
Q Consensus 96 t~~t~~Ql~~Le~~F~~~----~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQ 145 (229)
|.++.++...+...|..- +.+.+..+...+...+ |++...+...|.
T Consensus 1 w~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~----g~~~~~~~~i~~ 50 (92)
T 1fi6_A 1 WKITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKS----KLPILELSHIWE 50 (92)
T ss_dssp CCCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHH----SSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHc----CCCHHHHHHHHH
Confidence 567889999999999752 2567777777777777 888777666553
No 100
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=31.69 E-value=28 Score=26.84 Aligned_cols=47 Identities=23% Similarity=0.346 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHH
Q 027068 100 PAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLK 152 (229)
Q Consensus 100 ~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~K 152 (229)
..-+..-...|... .|- .....+||+.. |++..-|+..|.|+-.=..
T Consensus 14 ~~Il~aA~~lF~~~-Gy~-~ts~~~IA~~a----Gvsk~tlY~~F~sKe~L~~ 60 (202)
T 2i10_A 14 QVALQTAMELFWRQ-GYE-GTSITDLTKAL----GINPPSLYAAFGSKRDLFE 60 (202)
T ss_dssp HHHHHHHHHHHHHH-TTT-TCCHHHHHHHH----TCCHHHHHHHHCSHHHHHH
T ss_pred HHHHHHHHHHHHHh-Ccc-cCCHHHHHHHh----CCChHHHHHHhCCHHHHHH
Confidence 34455556668887 654 44577899999 9999999999998766543
No 101
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=31.17 E-value=33 Score=23.47 Aligned_cols=45 Identities=11% Similarity=0.236 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHHHh----hcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHH
Q 027068 97 TPTPAQLQILEHVYD----ECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARL 151 (229)
Q Consensus 97 ~~t~~Ql~~Le~~F~----~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~ 151 (229)
.+++.+..+|...|- .. ..-.+||..| |++...|+.+...-+.|.
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~------~s~~EIA~~l----gis~~tV~~~~~ra~~kL 66 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKP------KTLEEVGQYF----NVTRERIRQIEVKALRKL 66 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSC------CCHHHHHHHH----TCCHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHccCCCCC------CCHHHHHHHH----CCCHHHHHHHHHHHHHHH
Confidence 367888888888775 22 2345889999 999999998876444443
No 102
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=30.49 E-value=35 Score=25.63 Aligned_cols=35 Identities=20% Similarity=0.500 Sum_probs=23.3
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhhCC
Q 027068 105 ILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (229)
Q Consensus 105 ~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~~~ 158 (229)
++.-+|+.| +||... |--..+ .|||.+|+..+++.
T Consensus 17 iIkiLyQSN-PyP~pe-------------GTRqaR-----RNRRRRWR~RQrQI 51 (115)
T 2x7l_M 17 LIKFLYQSN-PPPNPE-------------GTRQAR-----RNRRRRWRERQRQI 51 (115)
T ss_dssp HHHHHHHSS-CCCCCC-------------CCTTTH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHccC-CCCCCC-------------Cchhhh-----HhHHHHHHHHHHHH
Confidence 445558888 999873 322211 59999999877763
No 103
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=30.18 E-value=60 Score=22.77 Aligned_cols=47 Identities=11% Similarity=0.111 Sum_probs=30.9
Q ss_pred CCCCCHHHHHHHHHHHhhc-CCCCCH-HHHHHHHHHHHhhCCCcccchhehhh
Q 027068 95 RWTPTPAQLQILEHVYDEC-KGTPRK-QKIQDMTAELAKHGQISETNVYNWFQ 145 (229)
Q Consensus 95 Rt~~t~~Ql~~Le~~F~~~-~~yP~~-~~r~~LA~~L~~~~gls~~qV~vWFQ 145 (229)
+..|+.++....-..+... ..+++. ....++|..+ ||++..|+.|..
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~----gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKI----GCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH----TSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHH----CcCHHHHHHHHH
Confidence 3468888776554444322 012221 4567899999 999999999974
No 104
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=30.13 E-value=41 Score=25.66 Aligned_cols=48 Identities=8% Similarity=-0.011 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHh
Q 027068 98 PTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQ 155 (229)
Q Consensus 98 ~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~ 155 (229)
+++.+..+|.-.|-.+ ..-.+||..| |+++..|+.+...-|.+.|+.-
T Consensus 141 L~~~~r~vl~l~~~~g------~s~~EIA~~l----gis~~tV~~~l~ra~~~Lr~~l 188 (194)
T 1or7_A 141 LPEDLRMAITLRELDG------LSYEEIAAIM----DCPVGTVRSRIFRAREAIDNKV 188 (194)
T ss_dssp SCHHHHHHHHHHHTTC------CCHHHHHHHT----TSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcC------CCHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHH
Confidence 4455555555544333 1235888899 9999999999987776666543
No 105
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=29.70 E-value=65 Score=22.35 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=31.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhh
Q 027068 92 ARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQN 146 (229)
Q Consensus 92 rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQN 146 (229)
......+|..++.+|.-++ .+ + ...+||..| |+++..|+....+
T Consensus 24 ~~~~~~Lt~rE~~Vl~l~~-~G--~----s~~eIA~~L----~iS~~TV~~~~~~ 67 (90)
T 3ulq_B 24 QKEQDVLTPRECLILQEVE-KG--F----TNQEIADAL----HLSKRSIEYSLTS 67 (90)
T ss_dssp -----CCCHHHHHHHHHHH-TT--C----CHHHHHHHH----TCCHHHHHHHHHH
T ss_pred cccccCCCHHHHHHHHHHH-cC--C----CHHHHHHHH----CcCHHHHHHHHHH
Confidence 3445679999999998877 33 2 245899999 9999999876654
No 106
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=28.65 E-value=62 Score=22.24 Aligned_cols=42 Identities=17% Similarity=0.276 Sum_probs=29.8
Q ss_pred CCCCCHHHHHHHHHHHh-h-cCCCCCHHHHHHHHHHHHhhCCCcccchhehhhh
Q 027068 95 RWTPTPAQLQILEHVYD-E-CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQN 146 (229)
Q Consensus 95 Rt~~t~~Ql~~Le~~F~-~-~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQN 146 (229)
|..|+.++....-..+. . . ....++|..+ ||+...|+.|...
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g------~s~~~ia~~~----gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDG------ASLQQIANDL----GINRVTLKNWIIK 46 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGG------SCHHHHHHHH----TSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC------ChHHHHHHHH----CcCHHHHHHHHHH
Confidence 35688887765555553 3 3 1356899999 9999999999753
No 107
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=28.50 E-value=43 Score=22.96 Aligned_cols=44 Identities=14% Similarity=0.137 Sum_probs=31.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhH
Q 027068 96 WTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 150 (229)
Q Consensus 96 t~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak 150 (229)
..+++.+..+|.-++ .+ +... +||..| |+++..|+.+..+-+.|
T Consensus 28 ~~Lt~~e~~vl~l~~-~g--~s~~----eIA~~l----~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 28 EMLTEREMEILLLIA-KG--YSNQ----EIASAS----HITIKTVKTHVSNILSK 71 (91)
T ss_dssp GGCCSHHHHHHHHHH-TT--CCTT----HHHHHH----TCCHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHH-cC--CCHH----HHHHHH----CcCHHHHHHHHHHHHHH
Confidence 357888899988753 22 3333 889999 99999999887654444
No 108
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=27.55 E-value=27 Score=26.55 Aligned_cols=41 Identities=12% Similarity=0.482 Sum_probs=31.0
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhh
Q 027068 103 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRA 149 (229)
Q Consensus 103 l~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRa 149 (229)
+......|... .| ......+||+.. |++..-++.+|.++-.
T Consensus 37 l~aa~~l~~~~-G~-~~~tv~~Ia~~a----gvs~~t~Y~~F~sK~~ 77 (218)
T 3dcf_A 37 IKVATELFREK-GY-YATSLDDIADRI----GFTKPAIYYYFKSKED 77 (218)
T ss_dssp HHHHHHHHHHT-CT-TTCCHHHHHHHH----TCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHc-Cc-ccCcHHHHHHHh----CCCHHHHHHHcCCHHH
Confidence 34445557777 54 444677899998 9999999999998765
No 109
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=27.26 E-value=24 Score=27.91 Aligned_cols=41 Identities=20% Similarity=0.344 Sum_probs=30.4
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHH
Q 027068 105 ILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARL 151 (229)
Q Consensus 105 ~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~ 151 (229)
.-...|... . .......+||+.. |++..-|+..|.||-.=.
T Consensus 52 aA~~lf~e~-G-~~~~t~~~IA~~a----Gvs~~tlY~~F~sK~~L~ 92 (236)
T 3q0w_A 52 TAENLLEDR-P-LADISVDDLAKGA----GISRPTFYFYFPSKEAVL 92 (236)
T ss_dssp HHHHHHHHS-C-GGGCCHHHHHHHH----TCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHc-C-cccCCHHHHHHHh----CCcHHHHHHHCCCHHHHH
Confidence 344457676 5 4444677899999 999999999999876543
No 110
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=26.82 E-value=58 Score=23.47 Aligned_cols=42 Identities=7% Similarity=0.095 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhh
Q 027068 96 WTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNR 147 (229)
Q Consensus 96 t~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNR 147 (229)
..++.++...+...+..+ + ...++|..| |++...|..|+..-
T Consensus 5 ~~~s~~~r~~i~~~~~~G--~----s~~~ia~~l----gis~~Tv~r~~~~~ 46 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN--V----SLHEMSRKI----SRSRHCIRVYLKDP 46 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT--C----CHHHHHHHH----TCCHHHHHHHHHSG
T ss_pred ccCCHHHHHHHHHHHHcC--C----CHHHHHHHH----CcCHHHHHHHHHcc
Confidence 457888877777777554 2 245889999 99999999999643
No 111
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=26.41 E-value=31 Score=27.27 Aligned_cols=53 Identities=15% Similarity=0.255 Sum_probs=35.1
Q ss_pred CCCCCCCHH-HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHH
Q 027068 93 RQRWTPTPA-QLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARL 151 (229)
Q Consensus 93 r~Rt~~t~~-Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~ 151 (229)
+.|...+.+ -+......|... . ........||..+ |++..-|+..|.||-.=.
T Consensus 20 ~~r~~~tr~~Il~aA~~l~~~~-G-~~~~s~~~IA~~a----Gvs~~tlY~~F~~K~~L~ 73 (211)
T 3fiw_A 20 QGMTKMNRETVITEALDLLDEV-G-LDGVSTRRLAKRL----GVEQPSLYWYFRTKRDLL 73 (211)
T ss_dssp ----CCCHHHHHHHHHHHHHHH-C-GGGCCHHHHHHHH----TSCTHHHHTTCSSHHHHH
T ss_pred ccccccCHHHHHHHHHHHHHhc-C-cccCCHHHHHHHh----CCChhHHHHHcCCHHHHH
Confidence 344445553 344555667777 5 3444577899999 999999999999876654
No 112
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=26.07 E-value=38 Score=22.16 Aligned_cols=42 Identities=24% Similarity=0.213 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhH
Q 027068 98 PTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 150 (229)
Q Consensus 98 ~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak 150 (229)
+++.+..+|.-++ .+ +. ..++|..| |++...|+.+..+=+.|
T Consensus 17 L~~~e~~vl~l~~-~g--~s----~~eIA~~l----~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERERQVLSAVV-AG--LP----NKSIAYDL----DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHHHHHHHHHT-TT--CC----HHHHHHHT----TSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-cC--CC----HHHHHHHH----CcCHHHHHHHHHHHHHH
Confidence 5677788887743 22 22 34889999 99999999877654444
No 113
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=25.99 E-value=48 Score=26.05 Aligned_cols=48 Identities=13% Similarity=0.146 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHH
Q 027068 97 TPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (229)
Q Consensus 97 ~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~ 154 (229)
.+++.+..+|.-.|-.. + ...+||..| |++...|+.+...-|.+.|+.
T Consensus 187 ~L~~~~r~vl~l~~~~g--~----s~~EIA~~l----gis~~~V~~~~~ra~~~Lr~~ 234 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYEE--L----PAKEVAKIL----ETSVSRVSQLKAKALERLREM 234 (239)
T ss_dssp TSCHHHHHHHHHHHTSC--C----CHHHHHHHT----TSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcC--C----CHHHHHHHh----CCCHHHHHHHHHHHHHHHHHH
Confidence 36777778887776544 1 245888999 999999999988766666654
No 114
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=25.37 E-value=35 Score=25.98 Aligned_cols=42 Identities=17% Similarity=0.419 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhh
Q 027068 102 QLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRA 149 (229)
Q Consensus 102 Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRa 149 (229)
-+......|... .|- .....+||+.. |++...|+..|.|+-.
T Consensus 19 Il~aA~~lf~~~-G~~-~~s~~~Ia~~a----gvs~~t~Y~yF~sKe~ 60 (203)
T 3ccy_A 19 IIERAAAMFARQ-GYS-ETSIGDIARAC----ECSKSRLYHYFDSKEA 60 (203)
T ss_dssp HHHHHHHHHHHT-CTT-TSCHHHHHHHT----TCCGGGGTTTCSCHHH
T ss_pred HHHHHHHHHHHc-Ccc-cCCHHHHHHHh----CCCcCeeeeeeCCHHH
Confidence 344555668877 654 44677899998 9999999999998754
No 115
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=24.81 E-value=33 Score=25.58 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHH
Q 027068 101 AQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARL 151 (229)
Q Consensus 101 ~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~ 151 (229)
.-+..-...|... . .......+||+.. |++...|+..|.|+-.=.
T Consensus 16 ~Il~aA~~lf~~~-G-~~~~t~~~IA~~a----gvs~~t~Y~~F~sK~~L~ 60 (199)
T 3on2_A 16 VLLARAESTLEKD-G-VDGLSLRQLAREA----GVSHAAPSKHFRDRQALL 60 (199)
T ss_dssp HHHHHHHHHHHHH-C-GGGCCHHHHHHHT----C-----CCCSSSSHHHHH
T ss_pred HHHHHHHHHHHhc-C-hhhhhHHHHHHHh----CCChHHHHHHhCCHHHHH
Confidence 3344455567777 5 3444577899998 999999999999976543
No 116
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=24.61 E-value=35 Score=25.81 Aligned_cols=43 Identities=19% Similarity=0.434 Sum_probs=32.0
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHH
Q 027068 103 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARL 151 (229)
Q Consensus 103 l~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~ 151 (229)
+......|... .|- .....+||+.. |++..-|+.+|.|+-.=.
T Consensus 18 l~aA~~lf~e~-G~~-~~t~~~IA~~a----gvsk~tlY~~F~sKe~L~ 60 (192)
T 2fq4_A 18 LSASYELLLES-GFK-AVTVDKIAERA----KVSKATIYKWWPNKAAVV 60 (192)
T ss_dssp HHHHHHHHHHH-CTT-TCCHHHHHHHH----TCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHc-Ccc-cccHHHHHHHc----CCCHHHHHHHCCCHHHHH
Confidence 33444557777 543 44677899998 999999999999976654
No 117
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=24.34 E-value=41 Score=25.15 Aligned_cols=40 Identities=25% Similarity=0.429 Sum_probs=30.0
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhh
Q 027068 104 QILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRA 149 (229)
Q Consensus 104 ~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRa 149 (229)
......|... .| ......+||+.. |++..-|+..|.|+-.
T Consensus 24 ~aa~~l~~~~-G~-~~~s~~~Ia~~a----gvs~~t~Y~~F~sK~~ 63 (206)
T 3kz9_A 24 EIALEVFARR-GI-GRGGHADIAEIA----QVSVATVFNYFPTRED 63 (206)
T ss_dssp HHHHHHHHHS-CC-SSCCHHHHHHHH----TSCHHHHHHHCCSHHH
T ss_pred HHHHHHHHhc-Cc-ccccHHHHHHHh----CCCHHHHHHHcCCHHH
Confidence 3444457777 54 444577899999 9999999999999754
No 118
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=23.79 E-value=38 Score=27.03 Aligned_cols=42 Identities=19% Similarity=0.335 Sum_probs=30.6
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhH
Q 027068 103 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 150 (229)
Q Consensus 103 l~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak 150 (229)
+......|... . .......+||+.. |++...|+..|.||-.=
T Consensus 49 l~AA~~lf~~~-G-~~~~t~~~IA~~a----Gvs~~tlY~~F~sK~~L 90 (255)
T 3g1o_A 49 LATAENLLEDR-P-LADISVDDLAKGA----GISRPTFYFYFPSKEAV 90 (255)
T ss_dssp HHHHHHHHTTS-C-GGGCCHHHHHHHH----TCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHc-C-CccCcHHHHHHHh----CCCHHHHHHHcCCHHHH
Confidence 33444557666 4 3344577899999 99999999999987654
No 119
>2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=23.70 E-value=19 Score=27.77 Aligned_cols=43 Identities=9% Similarity=0.209 Sum_probs=9.2
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhH
Q 027068 102 QLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 150 (229)
Q Consensus 102 Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak 150 (229)
-+......|... . .......+||+.. |++..-|+..|.|+-.=
T Consensus 35 Il~aa~~l~~~~-G-~~~~ti~~IA~~a----gvs~~t~Y~~F~sK~~L 77 (212)
T 2np3_A 35 ILTAARVCFAER-G-FDATSLRRIAETA----GVDQSLVHHFYGTKENL 77 (212)
T ss_dssp CHHHHHHHC---------------------------------CCC-CHH
T ss_pred HHHHHHHHHHHc-C-cccccHHHHHHHc----CCCHHHHHHHhCCHHHH
Confidence 344555667776 5 4445677899998 99999999999987543
No 120
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=23.54 E-value=64 Score=25.16 Aligned_cols=43 Identities=16% Similarity=0.325 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhH
Q 027068 102 QLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 150 (229)
Q Consensus 102 Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak 150 (229)
-+......|... .|- .....+||+.. |++...|+..|.|+-.=
T Consensus 35 Il~aA~~lf~~~-G~~-~~t~~~IA~~A----gvs~~t~Y~~F~sKe~L 77 (230)
T 2iai_A 35 LLSVAVQVFIER-GYD-GTSMEHLSKAA----GISKSSIYHHVTGKEEL 77 (230)
T ss_dssp HHHHHHHHHHHH-CTT-TCCHHHHHHHH----TSCHHHHTTTCSSHHHH
T ss_pred HHHHHHHHHHHc-Ccc-ccCHHHHHHHH----CCChhHHHHhCCCHHHH
Confidence 455667778877 643 44577899999 99999999999987653
No 121
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=22.91 E-value=1.2e+02 Score=22.66 Aligned_cols=51 Identities=18% Similarity=0.192 Sum_probs=34.9
Q ss_pred CCCCCCCCHHHHHHHHHHH-hhcCCCCCHHHHHHHHHHHHhhC--CCcccchhehhhh
Q 027068 92 ARQRWTPTPAQLQILEHVY-DECKGTPRKQKIQDMTAELAKHG--QISETNVYNWFQN 146 (229)
Q Consensus 92 rr~Rt~~t~~Ql~~Le~~F-~~~~~yP~~~~r~~LA~~L~~~~--gls~~qV~vWFQN 146 (229)
+++|.++|.+|...|-..+ +.+ +-.+.. +||.-..... +++...|..|..|
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~-~~~~q~---~la~wa~~~f~~~is~stis~ilk~ 59 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQ-NRSGQQ---DLIEWFREKFGKDISQPSVSQILSS 59 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSS-SCCCHH---HHHHHHHHHHSSCCSSSSTTHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhC-CCCCHH---HHHHHHHHHHCCCCcHHHHHHHHhh
Confidence 5688999999999999988 566 445544 4454111112 5788889999866
No 122
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=22.33 E-value=49 Score=22.79 Aligned_cols=35 Identities=20% Similarity=0.422 Sum_probs=21.8
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhhC
Q 027068 104 QILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (229)
Q Consensus 104 ~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~~ 157 (229)
.++.-+|+.| |||+.. -..-|. .|||.+|+..+++
T Consensus 19 RiIkiLyQSN-P~P~p~-GTrqaR-----------------RNRRRRWR~RQrQ 53 (72)
T 3lph_A 19 RLIKFLYQSN-PPPNPE-GTRQAR-----------------RNRRRRWRERQRQ 53 (72)
T ss_dssp HHHHHHHHTC-CCCCCC-SCHHHH-----------------HHHHHHHHHHHHH
T ss_pred HHHHHHHccC-CCCCCC-CchHHH-----------------HHHHHHHHHHHHH
Confidence 3455568888 999873 111011 4899999877654
No 123
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=22.24 E-value=37 Score=25.89 Aligned_cols=41 Identities=15% Similarity=0.338 Sum_probs=32.5
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhH
Q 027068 103 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 150 (229)
Q Consensus 103 l~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak 150 (229)
+..-...|... .| . .....||+.. |++...|+..|.||-.=
T Consensus 19 l~aA~~lf~~~-G~-~-~t~~~IA~~a----gvs~~tlY~~F~sK~~L 59 (196)
T 2qwt_A 19 LEVAYDTFAAE-GL-G-VPMDEIARRA----GVGAGTVYRHFPTKQAL 59 (196)
T ss_dssp HHHHHHHHHHT-CT-T-SCHHHHHHHT----TSCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHhc-CC-C-CCHHHHHHHh----CCCHHHHHHHCCCHHHH
Confidence 34445568888 77 5 6888999999 99999999999997543
No 124
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=21.82 E-value=34 Score=26.66 Aligned_cols=41 Identities=20% Similarity=0.359 Sum_probs=30.5
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhH
Q 027068 104 QILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 150 (229)
Q Consensus 104 ~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak 150 (229)
..-...|... .| ......+||+.. |++..-|+..|.||-.=
T Consensus 42 ~aA~~lf~~~-G~-~~~t~~~IA~~A----Gvs~~tlY~~F~sKe~L 82 (221)
T 3g7r_A 42 GTATRIFYAE-GI-HSVGIDRITAEA----QVTRATLYRHFSGKDDL 82 (221)
T ss_dssp HHHHHHHHHH-CS-TTSCHHHHHHHH----TCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHh-Cc-ccCCHHHHHHHh----CCCHHHHHHHCCCHHHH
Confidence 3344457777 54 444677899999 99999999999987653
No 125
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=21.58 E-value=35 Score=25.44 Aligned_cols=43 Identities=9% Similarity=0.227 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhh
Q 027068 101 AQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRA 149 (229)
Q Consensus 101 ~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRa 149 (229)
.-+......|... .| ......+||+.. |++..-|+..|.|+-.
T Consensus 14 ~Il~aa~~lf~~~-G~-~~~t~~~IA~~a----gvs~~tlY~~F~sK~~ 56 (197)
T 3rd3_A 14 HLLDTGYRIMAVK-GF-SGVGLNEILQSA----GVPKGSFYHYFKSKEQ 56 (197)
T ss_dssp HHHHHHHHHHHHH-CS-TTCCHHHHHHHH----TCCHHHHTTTCSCHHH
T ss_pred HHHHHHHHHHHHC-Cc-ccCCHHHHHHHh----CCChhhHHHHcCCHHH
Confidence 3344555668777 54 344567899999 9999999999999876
No 126
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=21.28 E-value=57 Score=24.60 Aligned_cols=44 Identities=18% Similarity=0.369 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHH
Q 027068 102 QLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARL 151 (229)
Q Consensus 102 Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~ 151 (229)
-+......|... .| ......+||+.. |++...++..|.|+-.=.
T Consensus 18 Il~aa~~lf~~~-G~-~~~tv~~Ia~~a----gvs~~t~Y~~F~sK~~L~ 61 (195)
T 2iu5_A 18 IAKAFKDLMQSN-AY-HQISVSDIMQTA----KIRRQTFYNYFQNQEELL 61 (195)
T ss_dssp HHHHHHHHHHHS-CG-GGCCHHHHHHHH----TSCGGGGGGTCSSHHHHH
T ss_pred HHHHHHHHHHhC-CC-CeeCHHHHHHHh----CCCHHHHHHHcCCHHHHH
Confidence 344555667777 54 344677899999 999999999999976544
No 127
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=21.19 E-value=30 Score=25.88 Aligned_cols=44 Identities=9% Similarity=0.177 Sum_probs=32.6
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHH
Q 027068 102 QLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARL 151 (229)
Q Consensus 102 Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~ 151 (229)
-+......|... . .......+||+.. |++...++..|.||-.=.
T Consensus 13 Il~aa~~l~~~~-G-~~~~t~~~Ia~~a----gvs~~t~Y~~F~sK~~L~ 56 (206)
T 3dew_A 13 LMEVATELFAQK-G-FYGVSIRELAQAA----GASISMISYHFGGKEGLY 56 (206)
T ss_dssp HHHHHHHHHHHH-C-GGGCCHHHHHHHH----TCCHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHhcC-C-cccCcHHHHHHHh----CCCHHHHHHHcCCHHHHH
Confidence 344555667777 5 4445677899999 999999999999976543
No 128
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=21.10 E-value=50 Score=25.86 Aligned_cols=40 Identities=20% Similarity=0.385 Sum_probs=30.0
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhh
Q 027068 104 QILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRA 149 (229)
Q Consensus 104 ~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRa 149 (229)
......|... .| ......+||+.. |++...|+..|.|+-.
T Consensus 50 ~aA~~l~~~~-G~-~~~tv~~IA~~A----Gvs~~t~Y~~F~sKe~ 89 (229)
T 3bni_A 50 DACADLLDEV-GY-DALSTRAVALRA----DVPIGSVYRFFGNKRQ 89 (229)
T ss_dssp HHHHHHHHHH-CT-TTCCHHHHHHHH----TCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHhc-Ch-hhccHHHHHHHH----CCCchhHHHHcCCHHH
Confidence 3344457777 54 444677899999 9999999999999754
No 129
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=20.88 E-value=54 Score=19.90 Aligned_cols=36 Identities=14% Similarity=0.262 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhh
Q 027068 100 PAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQ 145 (229)
Q Consensus 100 ~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQ 145 (229)
+.+...+...+..+ + ...+||..| |++...|..|+.
T Consensus 18 ~~~~~~i~~l~~~g--~----s~~eIA~~l----gis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHELAKMG--Y----TVQQIANAL----GVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHHHHTT--C----CHHHHHHHH----TSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC--C----CHHHHHHHH----CcCHHHHHHHHH
Confidence 55555555555444 2 245889999 999999998874
No 130
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=20.51 E-value=35 Score=25.79 Aligned_cols=41 Identities=7% Similarity=0.207 Sum_probs=32.8
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhH
Q 027068 103 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 150 (229)
Q Consensus 103 l~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak 150 (229)
+..-...|... .| . ....+||+.. |++..-|+..|.|+-.=
T Consensus 22 l~aA~~lf~~~-G~-~-~s~~~Ia~~a----gvs~~t~Y~~F~sK~~L 62 (199)
T 2rek_A 22 IEAAAAEVARH-GA-D-ASLEEIARRA----GVGSATLHRHFPSRWGL 62 (199)
T ss_dssp HHHHHHHHHHH-GG-G-CCHHHHHHHH----TCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHhc-CC-C-CCHHHHHHHh----CCchHHHHHHCCCHHHH
Confidence 44455568888 77 5 5889999999 99999999999987543
No 131
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=20.30 E-value=56 Score=26.53 Aligned_cols=54 Identities=11% Similarity=0.140 Sum_probs=36.2
Q ss_pred CCCCCCCHHH-HHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHH
Q 027068 93 RQRWTPTPAQ-LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLK 152 (229)
Q Consensus 93 r~Rt~~t~~Q-l~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~K 152 (229)
..|...+.+. +..-...|... .| .......||+.+ |++..-|+..|.||-.=..
T Consensus 14 ~~r~~~tr~~Il~AA~~l~~e~-G~-~~~S~~~IA~~a----Gvs~~tlY~hF~sK~~Ll~ 68 (243)
T 2g7l_A 14 PAKPALSRRWIVDTAVALMRAE-GL-EKVTMRRLAQEL----DTGPASLYVYVANTAELHA 68 (243)
T ss_dssp --CCCCCHHHHHHHHHHHHHHH-CS-SSCCHHHHHHHT----TSCHHHHTTTCCSHHHHHH
T ss_pred CCCcccCHHHHHHHHHHHHHhc-Cc-hhcCHHHHHHHH----CCChhHHHHHcCCHHHHHH
Confidence 3344455543 34445567777 54 444667899999 9999999999999765543
No 132
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=20.12 E-value=43 Score=25.36 Aligned_cols=42 Identities=12% Similarity=0.321 Sum_probs=31.0
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhh
Q 027068 102 QLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRA 149 (229)
Q Consensus 102 Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRa 149 (229)
-+......|... .| ......+||+.. |++...|+..|.|+-.
T Consensus 22 Il~aa~~l~~~~-G~-~~~ti~~Ia~~a----gvs~~t~Y~~F~sK~~ 63 (207)
T 2rae_A 22 ISTVGIELFTEQ-GF-DATSVDEVAEAS----GIARRTLFRYFPSKNA 63 (207)
T ss_dssp HHHHHHHHHHHH-CT-TTSCHHHHHHHT----TSCHHHHHHHCSSTTT
T ss_pred HHHHHHHHHHHc-Cc-ccCCHHHHHHHh----CCCcchHhhhCCCHHH
Confidence 344555557777 54 444567899998 9999999999998643
Done!