Query 027068
Match_columns 229
No_of_seqs 296 out of 1477
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 06:56:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027068.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027068hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2craa1 a.4.1.1 (A:7-64) Homeo 99.8 8.1E-22 5.9E-26 134.0 4.5 58 91-153 1-58 (58)
2 d1pufa_ a.4.1.1 (A:) Homeobox 99.8 4E-21 2.9E-25 137.6 8.1 66 87-157 9-74 (77)
3 d1zq3p1 a.4.1.1 (P:2-68) Homeo 99.8 3.2E-21 2.4E-25 134.7 7.3 63 91-158 1-63 (67)
4 d1jgga_ a.4.1.1 (A:) Even-skip 99.8 3E-21 2.2E-25 130.7 5.9 57 93-154 1-57 (57)
5 d1ig7a_ a.4.1.1 (A:) Msx-1 hom 99.8 3.2E-21 2.3E-25 131.0 5.8 57 92-153 1-57 (58)
6 d9anta_ a.4.1.1 (A:) Antennape 99.8 3.2E-21 2.3E-25 130.1 5.5 55 95-154 1-55 (56)
7 d2e1oa1 a.4.1.1 (A:8-64) Homeo 99.8 5.7E-21 4.2E-25 129.3 5.7 57 92-153 1-57 (57)
8 d1vnda_ a.4.1.1 (A:) VND/NK-2 99.8 4E-21 2.9E-25 137.7 4.4 67 86-157 4-70 (77)
9 d1b72a_ a.4.1.1 (A:) Homeobox 99.8 9E-21 6.5E-25 139.1 6.3 64 88-156 24-87 (88)
10 d1uhsa_ a.4.1.1 (A:) Homeodoma 99.8 2.3E-20 1.7E-24 132.0 7.8 62 92-157 2-63 (72)
11 d1fjla_ a.4.1.1 (A:) Paired pr 99.8 1.5E-20 1.1E-24 130.4 6.8 62 90-156 1-62 (65)
12 d1p7ia_ a.4.1.1 (A:) Engrailed 99.8 1E-20 7.3E-25 126.3 5.3 53 93-150 1-53 (53)
13 d1ftta_ a.4.1.1 (A:) Thyroid t 99.8 2.8E-20 2E-24 130.2 6.9 63 91-158 2-64 (68)
14 d2cuea1 a.4.1.1 (A:7-74) Paire 99.8 2.6E-20 1.9E-24 130.4 5.9 61 91-156 1-61 (68)
15 d1yz8p1 a.4.1.1 (P:1-60) Pitui 99.8 2E-20 1.5E-24 127.8 3.8 59 92-155 2-60 (60)
16 d1bw5a_ a.4.1.1 (A:) Insulin g 99.8 9.9E-20 7.2E-24 126.7 5.0 62 90-156 2-63 (66)
17 d2cufa1 a.4.1.1 (A:8-89) Homeo 99.8 1.9E-19 1.4E-23 130.2 6.2 66 92-158 1-77 (82)
18 d1au7a1 a.4.1.1 (A:103-160) Pi 99.8 1.5E-19 1.1E-23 122.6 4.6 57 93-154 1-57 (58)
19 d1ocpa_ a.4.1.1 (A:) Oct-3 POU 99.8 1.8E-19 1.3E-23 125.7 4.3 60 90-154 7-66 (67)
20 d1le8a_ a.4.1.1 (A:) Mating ty 99.7 2.7E-19 2E-23 119.2 4.2 53 95-152 1-53 (53)
21 d1e3oc1 a.4.1.1 (C:104-160) Oc 99.7 9.8E-19 7.1E-23 118.2 5.2 56 94-154 1-56 (57)
22 d1wi3a_ a.4.1.1 (A:) DNA-bindi 99.7 9.2E-19 6.7E-23 123.3 4.6 58 91-153 7-65 (71)
23 d1wh7a_ a.4.1.1 (A:) ZF-HD hom 99.7 9.7E-19 7.1E-23 125.9 4.8 62 87-153 13-78 (80)
24 d2ecba1 a.4.1.1 (A:8-83) Zinc 99.7 1.2E-17 9E-22 118.9 6.5 57 97-158 10-66 (76)
25 d1s7ea1 a.4.1.1 (A:103-152) He 99.7 4E-18 2.9E-22 112.1 2.8 50 94-148 1-50 (50)
26 d1pufb_ a.4.1.1 (B:) pbx1 {Hum 99.7 3.9E-17 2.8E-21 115.4 6.9 60 92-156 2-64 (73)
27 d1lfba_ a.4.1.1 (A:) Hepatocyt 99.7 1.1E-17 8.2E-22 119.7 3.1 60 95-155 1-77 (78)
28 d2ecca1 a.4.1.1 (A:1-76) Homeo 99.6 9E-17 6.6E-21 114.3 6.9 58 94-156 6-63 (76)
29 d1x2ma1 a.4.1.1 (A:8-59) Lag1 99.6 1.9E-17 1.4E-21 109.7 2.9 51 99-153 1-51 (52)
30 d2cqxa1 a.4.1.1 (A:8-66) LAG1 99.6 9.1E-17 6.7E-21 109.1 2.9 56 93-152 3-58 (59)
31 d1k61a_ a.4.1.1 (A:) mat alpha 99.6 1.1E-15 8.2E-20 103.9 5.7 53 97-153 4-58 (60)
32 d1x2na1 a.4.1.1 (A:6-67) Homeo 99.5 3.8E-15 2.8E-19 101.9 6.4 58 91-152 2-61 (62)
33 d1e3oc2 a.35.1.1 (C:1-75) Oct- 99.4 1.7E-15 1.2E-19 105.6 -2.0 60 7-66 15-74 (75)
34 d1au7a2 a.35.1.1 (A:5-76) Pit- 99.4 4.2E-15 3.1E-19 102.6 -1.7 61 7-67 11-71 (72)
35 d1ijwc_ a.4.1.2 (C:) HIN recom 80.6 0.72 5.2E-05 27.9 3.2 41 95-145 3-43 (47)
36 d1hlva1 a.4.1.7 (A:1-66) DNA-b 79.4 1.4 0.0001 28.5 4.6 47 95-149 5-51 (66)
37 d2jn6a1 a.4.1.19 (A:1-89) Unch 48.1 7.2 0.00052 25.7 3.3 43 95-145 3-45 (89)
38 d1rp3a2 a.4.13.2 (A:164-234) S 47.7 7.6 0.00055 24.0 3.2 46 98-153 22-67 (71)
39 d1or7a1 a.4.13.2 (A:120-187) S 46.9 7.9 0.00058 23.9 3.2 46 98-153 19-64 (68)
40 d2iu5a1 a.4.1.9 (A:1-71) Trans 37.5 11 0.00079 23.5 2.7 41 102-148 11-51 (71)
41 d2hkua1 a.4.1.9 (A:18-87) Puta 35.2 9.9 0.00072 23.7 2.2 40 103-149 7-46 (70)
42 d2fq4a1 a.4.1.9 (A:9-77) Trans 34.4 9.3 0.00067 23.8 1.9 42 103-150 10-51 (69)
43 d1fsea_ a.4.6.2 (A:) Germinati 33.0 31 0.0023 21.0 4.4 44 95-149 2-45 (67)
44 d2fd5a1 a.4.1.9 (A:1-76) Proba 30.0 14 0.001 23.0 2.3 41 103-149 13-53 (76)
45 d1ui5a1 a.4.1.9 (A:5-75) A-fac 29.2 13 0.00092 23.1 1.9 39 104-148 12-50 (71)
46 d1ku3a_ a.4.13.2 (A:) Sigma70 28.4 20 0.0015 22.0 2.8 39 97-141 8-46 (61)
47 d2g3ba1 a.4.1.9 (A:2-73) Putat 27.4 6.5 0.00047 24.7 0.1 41 104-150 9-49 (72)
48 d1t56a1 a.4.1.9 (A:22-94) Ethr 27.0 12 0.0009 23.1 1.6 39 105-149 11-49 (73)
49 d2gena1 a.4.1.9 (A:6-75) Proba 26.0 16 0.0012 22.3 2.0 38 105-148 8-45 (70)
50 d1rkta1 a.4.1.9 (A:2-82) Hypot 25.9 16 0.0012 23.1 2.0 40 104-149 18-57 (81)
51 d2np5a1 a.4.1.9 (A:9-77) Trans 24.7 14 0.001 22.6 1.5 40 104-149 8-47 (69)
52 d2fbqa1 a.4.1.9 (A:2-80) Trans 24.7 17 0.0013 22.7 2.0 39 105-149 12-50 (79)
53 d1zk8a1 a.4.1.9 (A:6-77) Trans 24.2 16 0.0011 22.6 1.7 40 103-148 9-48 (72)
54 d3c07a1 a.4.1.9 (A:15-89) Puta 23.8 19 0.0014 22.2 2.0 40 104-149 12-51 (75)
55 d1jt6a1 a.4.1.9 (A:2-72) Multi 23.1 16 0.0011 22.5 1.4 39 105-149 9-47 (71)
56 d1fi6a_ a.39.1.6 (A:) Reps1 {M 23.0 33 0.0024 22.0 3.3 45 96-144 1-49 (92)
57 d2g7la1 a.4.1.9 (A:16-83) Puta 22.9 15 0.0011 22.6 1.4 42 103-150 10-51 (68)
58 d2o7ta1 a.4.1.9 (A:1-78) Trans 22.3 17 0.0012 22.9 1.6 39 104-148 14-52 (78)
59 d2gfna1 a.4.1.9 (A:4-80) Proba 22.3 17 0.0013 22.7 1.6 37 107-149 16-52 (77)
60 d2hyja1 a.4.1.9 (A:8-82) Putat 21.7 18 0.0013 22.5 1.6 40 104-149 12-51 (75)
61 d1c07a_ a.39.1.6 (A:) Eps15 {H 21.3 23 0.0017 23.1 2.1 46 96-145 2-51 (95)
62 d1v7ba1 a.4.1.9 (A:1-74) Trans 21.1 20 0.0015 22.1 1.7 42 102-149 9-50 (74)
63 d2fx0a1 a.4.1.9 (A:4-76) Hemol 20.3 25 0.0019 21.8 2.1 44 103-152 10-53 (73)
No 1
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.83 E-value=8.1e-22 Score=134.01 Aligned_cols=58 Identities=31% Similarity=0.449 Sum_probs=55.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHH
Q 027068 91 TARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 153 (229)
Q Consensus 91 ~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr 153 (229)
+|++|+.||..|+.+||..|..+ +||+..+|.+||..| ||++.+|+|||||||+|+||
T Consensus 1 Grr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~vWFqNrR~k~kk 58 (58)
T d2craa1 1 GRKKRIPYSKGQLRELEREYAAN-KFITKDKRRKISAAT----SLSERQITIWFQNRRVKEKK 58 (58)
T ss_dssp CCCSCCCSCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCHHHHHHHHHHHhhc-CCCCHHHHHHHHHHc----CCCHHHeeecccchhhhccC
Confidence 36789999999999999999999 999999999999999 99999999999999999875
No 2
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.83 E-value=4e-21 Score=137.63 Aligned_cols=66 Identities=24% Similarity=0.309 Sum_probs=60.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhhC
Q 027068 87 SQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (229)
Q Consensus 87 ~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~~ 157 (229)
..+..++.|+.||+.|+.+||..|+.+ +||+..+|.+||..| ||++.+|+|||||||+|+|+..+.
T Consensus 9 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~-~yPs~~~r~~LA~~l----~l~~~qV~iWFqNrR~k~kr~~~~ 74 (77)
T d1pufa_ 9 HARSTRKKRCPYTKHQTLELEKEFLFN-MYLTRDRRYEVARLL----NLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp CCCTTSCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcCCCCCCCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHh----CCCHHHhhhhhhhhHHHHHHHHHH
Confidence 334567889999999999999999999 999999999999999 999999999999999999987654
No 3
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.83 E-value=3.2e-21 Score=134.67 Aligned_cols=63 Identities=29% Similarity=0.398 Sum_probs=59.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhhCC
Q 027068 91 TARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (229)
Q Consensus 91 ~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~~~ 158 (229)
++|.|++||+.|+.+||..|+.+ +||+..++.+||..| ||++.+|+|||||||+|+|+.....
T Consensus 1 Prr~Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~~V~iWFqNrR~k~kk~~~~~ 63 (67)
T d1zq3p1 1 PRRTRTTFTSSQIAELEQHFLQG-RYLTAPRLADLSAKL----ALGTAQVKIWFKNRRRRHKIQSDQH 63 (67)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHh----CCCccceeeccccHHHhHhhhhhhc
Confidence 35789999999999999999999 999999999999999 9999999999999999999877654
No 4
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.83 E-value=3e-21 Score=130.74 Aligned_cols=57 Identities=32% Similarity=0.447 Sum_probs=55.0
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHH
Q 027068 93 RQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (229)
Q Consensus 93 r~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~ 154 (229)
|.||.||+.|+.+||..|+.+ +||+..++.+||..| ||++.+|+|||||||+|+||+
T Consensus 1 R~Rt~fT~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l----gl~~~qV~vWFqNrR~k~kk~ 57 (57)
T d1jgga_ 1 RYRTAFTRDQLGRLEKEFYKE-NYVSRPRRCELAAQL----NLPESTIKVWFQNRRMKDKRQ 57 (57)
T ss_dssp CCCCCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHh----CCChhHhhhcchhhhhhhhcC
Confidence 579999999999999999999 999999999999999 999999999999999999973
No 5
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.82 E-value=3.2e-21 Score=131.00 Aligned_cols=57 Identities=35% Similarity=0.466 Sum_probs=55.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHH
Q 027068 92 ARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 153 (229)
Q Consensus 92 rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr 153 (229)
||+|+.||+.|+.+||..|+.+ +||+..+|.+||..| ||++.+|+|||||||+|+||
T Consensus 1 rr~Rt~ft~~Ql~~Le~~F~~~-~yP~~~~r~~LA~~l----~l~~~~V~~WFqNrR~k~kr 57 (58)
T d1ig7a_ 1 RKPRTPFTTAQLLALERKFRQK-QYLSIAERAEFSSSL----SLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHh----CCChhheeecCcchHhHhcc
Confidence 5789999999999999999999 999999999999999 99999999999999999987
No 6
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila melanogaster [TaxId: 7227]}
Probab=99.82 E-value=3.2e-21 Score=130.10 Aligned_cols=55 Identities=27% Similarity=0.380 Sum_probs=53.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHH
Q 027068 95 RWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (229)
Q Consensus 95 Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~ 154 (229)
||.||.+|+.+||..|+.+ +||+..+|.+||..| ||++++|+|||||||+|+||+
T Consensus 1 Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~~V~iWFQNrRak~kk~ 55 (56)
T d9anta_ 1 RQTYTRYQTLELEKEFHFN-RYLTRRRRIEIAHAL----SLTERQIKIWFQNRRMKWKKE 55 (56)
T ss_dssp CCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHC
T ss_pred CCcCCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHh----CCChhHeeeccccchhhhhhc
Confidence 7999999999999999999 999999999999999 999999999999999999985
No 7
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.82 E-value=5.7e-21 Score=129.33 Aligned_cols=57 Identities=28% Similarity=0.367 Sum_probs=54.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHH
Q 027068 92 ARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 153 (229)
Q Consensus 92 rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr 153 (229)
++.|+.||+.|+.+||..|+.+ +||+..++.+||..| ||++.+|+|||||||+|+||
T Consensus 1 k~~R~~ft~~Q~~~Le~~F~~n-~yp~~~~r~~LA~~l----~L~~~qV~~WFqNrR~k~kk 57 (57)
T d2e1oa1 1 KGGQVRFSNDQTIELEKKFETQ-KYLSPPERKRLAKML----QLSERQVKTWFQNRRAKWRR 57 (57)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHh----CCCHHHhhHhhhhhhhhccC
Confidence 4689999999999999999999 999999999999999 99999999999999999986
No 8
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.81 E-value=4e-21 Score=137.66 Aligned_cols=67 Identities=25% Similarity=0.321 Sum_probs=61.0
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhhC
Q 027068 86 GSQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (229)
Q Consensus 86 ~~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~~ 157 (229)
+.+.+.++.||+||++|+.+||..|+.+ +||+..+|++||..| ||++.+|+|||||||+|.|+.+..
T Consensus 4 g~p~k~rr~Rt~ft~~Q~~~Le~~F~~~-~yP~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kr~~~~ 70 (77)
T d1vnda_ 4 GLPNKKRKRRVLFTKAQTYELERRFRQQ-RYLSAPEREHLASLI----RLTPTQVKIWFQNHRYKTKRAQNE 70 (77)
T ss_dssp CCSSSSCSSCCCCCTTHHHHHHHHHHHC-SCCCHHHHHHHHHHH----TCCHHHHHHHHHHSSSSCSSSCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHh----CCChhhhhhcchhHHHHHHHHhhc
Confidence 3445678899999999999999999999 999999999999999 999999999999999999875543
No 9
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.81 E-value=9e-21 Score=139.07 Aligned_cols=64 Identities=28% Similarity=0.366 Sum_probs=56.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhh
Q 027068 88 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (229)
Q Consensus 88 ~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~ 156 (229)
...+++.|+.||+.|+.+||..|..+ +||+..+|++||..| ||++.+|+|||||||+|+||.++
T Consensus 24 ~~~~kr~Rt~ft~~Ql~~Le~~F~~n-~yPs~~~r~~LA~~l----~l~~~~V~vWFqNrR~k~Kk~~~ 87 (88)
T d1b72a_ 24 LGSPSGLRTNFTTRQLTELEKEFHFN-KYLSRARRVEIAATL----ELNETQVKIWFQNRRMKQKKRER 87 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHhC-CCCchHHHHHHHHHc----CCCHHHeeeccHhHHHHHHHhcc
Confidence 34567899999999999999999999 999999999999999 99999999999999999999765
No 10
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.81 E-value=2.3e-20 Score=131.97 Aligned_cols=62 Identities=24% Similarity=0.379 Sum_probs=57.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhhC
Q 027068 92 ARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (229)
Q Consensus 92 rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~~ 157 (229)
++.|++||..|+.+||..|..+++||+..+|++||..| ||++++|+|||||||+|+||....
T Consensus 2 ~~~r~~fT~~Ql~~Le~~F~~~n~yP~~~~r~~LA~~l----gL~~~~VqvWFqNrRak~rk~~~~ 63 (72)
T d1uhsa_ 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEA----GLTEEQTQKWFKQRLAEWRRSEGL 63 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHccccCCHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHhccCC
Confidence 57899999999999999998743899999999999999 999999999999999999987654
No 11
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.81 E-value=1.5e-20 Score=130.43 Aligned_cols=62 Identities=29% Similarity=0.524 Sum_probs=58.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhh
Q 027068 90 LTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (229)
Q Consensus 90 ~~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~ 156 (229)
+.|+.||.|++.|+.+||..|..+ +||+..++.+||..| ||++.+|++||||||+|+|++..
T Consensus 1 k~rr~Rt~ft~~Q~~~Le~~F~~n-~yPs~~~r~~LA~~l----gl~~~~V~~WFqNrR~k~kk~~~ 62 (65)
T d1fjla_ 1 KQRRSRTTFSASQLDELERAFERT-QYPDIYTREELAQRT----NLTEARIQVWFQNRRARLRKQHT 62 (65)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHc-CCCChHHHHHHHHHh----CCCHHHhhHhhhhHHHHHHhccc
Confidence 367899999999999999999999 999999999999999 99999999999999999998764
No 12
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]}
Probab=99.81 E-value=1e-20 Score=126.28 Aligned_cols=53 Identities=30% Similarity=0.494 Sum_probs=51.5
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhH
Q 027068 93 RQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 150 (229)
Q Consensus 93 r~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak 150 (229)
|+||.||+.|+.+||..|+.+ +||+..+|.+||..| ||++.+|+|||||||+|
T Consensus 1 R~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l----gL~~~qV~vWFqNrRaK 53 (53)
T d1p7ia_ 1 RPRTAFSSEQLARLKREFNEN-RYLTERRRQQLSSEL----GLNEAQIKIWFQNARAK 53 (53)
T ss_dssp CCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHC
T ss_pred CCCccCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHh----CCChHHhhhcccccCCC
Confidence 579999999999999999999 999999999999999 99999999999999986
No 13
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.80 E-value=2.8e-20 Score=130.21 Aligned_cols=63 Identities=22% Similarity=0.351 Sum_probs=58.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhhCC
Q 027068 91 TARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (229)
Q Consensus 91 ~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~~~ 158 (229)
+|+.||.||+.|+.+||..|..+ +||+..+|.+||..| ||++.+|+|||||||+|+|+.....
T Consensus 2 krr~Rt~ft~~Ql~~Le~~F~~~-~yPs~~~r~~LA~~l----~L~~~~V~~WFqNrR~k~kk~~~~~ 64 (68)
T d1ftta_ 2 RRKRRVLFSQAQVYELERRFKQQ-KYLSAPEREHLASMI----HLTPTQVKIWFQNHRYKMKRQAKDK 64 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHh----CCCccceeeecccHHHHHhhcccch
Confidence 46899999999999999999999 999999999999999 9999999999999999999865543
No 14
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.80 E-value=2.6e-20 Score=130.40 Aligned_cols=61 Identities=26% Similarity=0.498 Sum_probs=57.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhh
Q 027068 91 TARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (229)
Q Consensus 91 ~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~ 156 (229)
++|.||+||+.|+.+||..|..+ +||+..+|.+||..| ||++.+|+|||||+|+|+|+...
T Consensus 1 grR~Rt~ft~~Ql~~Le~~F~~n-~yP~~~~r~~LA~~l----~L~~~~V~~WFqNrR~k~kr~~~ 61 (68)
T d2cuea1 1 GQRNRTSFTQEQIEALEKEFERT-HYPDVFARERLAAKI----DLPEARIQVWFSNRRAKWRREEK 61 (68)
T ss_dssp SCCCCCCSCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHh----CcChhheeecCcchhHHHHhhhh
Confidence 36789999999999999999999 999999999999999 99999999999999999998654
No 15
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.79 E-value=2e-20 Score=127.84 Aligned_cols=59 Identities=31% Similarity=0.495 Sum_probs=56.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHh
Q 027068 92 ARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQ 155 (229)
Q Consensus 92 rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~ 155 (229)
||.||+||++|+.+||..|..+ +||+..++..||..| ||++.+|++||||||+|+|+.+
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~-~yP~~~~r~~LA~~l----~l~~~~V~~WFqNrR~k~kr~~ 60 (60)
T d1yz8p1 2 RRQRTHFTSQQLQQLEATFQRN-RYPDMSTREEIAVWT----NLTEARVRVWFKNRRAKWRKRE 60 (60)
T ss_dssp SCSCCCCCHHHHHHHHHHHTTC-SSCCTTTTTHHHHHT----TSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHc-CCCChHHHHHHHHHH----CCChHHHHHHhHHHHHHHHhcC
Confidence 6789999999999999999999 999999999999999 9999999999999999999863
No 16
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.77 E-value=9.9e-20 Score=126.65 Aligned_cols=62 Identities=24% Similarity=0.342 Sum_probs=58.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhh
Q 027068 90 LTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (229)
Q Consensus 90 ~~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~ 156 (229)
+.+|.|+.||.+|+.+||..|..+ +||+..++++||..| ||++.+|++||||||+|.|+...
T Consensus 2 k~kR~Rt~~t~~Q~~~Le~~F~~n-~~Ps~~~~~~LA~~l----~l~~~~V~~WFqNrR~k~kk~~~ 63 (66)
T d1bw5a_ 2 KTTRVRTVLNEKQLHTLRTCYAAN-PRPDALMKEQLVEMT----GLSPRVIRVWFQNKRCKDKKRSI 63 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHC-SCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHCSSCCC
T ss_pred CCCCCCcCcCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHc----CcCHHHhhhhhHhHHHHHHHHHH
Confidence 367899999999999999999999 999999999999999 99999999999999999987544
No 17
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1 (Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.77 E-value=1.9e-19 Score=130.24 Aligned_cols=66 Identities=26% Similarity=0.488 Sum_probs=59.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH-----------hhCCCcccchhehhhhhhhHHHHHhhCC
Q 027068 92 ARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELA-----------KHGQISETNVYNWFQNRRARLKRKQSGV 158 (229)
Q Consensus 92 rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~-----------~~~gls~~qV~vWFQNRRak~Kr~~~~~ 158 (229)
||.|+.|++.||.+||.+|+.+ +||+..+|++||..|. .+.+|++.+|+|||||||+|+|++....
T Consensus 1 Rr~R~~ft~~Ql~~LE~~F~~n-~yP~~~~R~~LA~~~~~~~~~~~~~~~~~~~l~~~~V~vWFqNRR~k~kk~~~~a 77 (82)
T d2cufa1 1 RGSRFTWRKECLAVMESYFNEN-QYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANIA 77 (82)
T ss_dssp CCCSCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CcCCCCCCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhccccccccccchhccCCCHHHHHHHHhhhHHHHHHhhhHH
Confidence 6789999999999999999999 9999999999999872 2345999999999999999999977654
No 18
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.76 E-value=1.5e-19 Score=122.58 Aligned_cols=57 Identities=37% Similarity=0.510 Sum_probs=54.8
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHH
Q 027068 93 RQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (229)
Q Consensus 93 r~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~ 154 (229)
|.||.|+..|+.+||..|..+ +||+..++.+||..| ||++.+|+|||||||+++|+.
T Consensus 1 r~Rt~~s~~q~~~Le~~F~~~-~~P~~~~~~~La~~l----~l~~~~V~~WFqNrR~k~kr~ 57 (58)
T d1au7a1 1 KRRTTISIAAKDALERHFGEH-SKPSSQEIMRMAEEL----NLEKEVVRVWFCNRRQREKRV 57 (58)
T ss_dssp CCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHc-cCCCHHHHHHHHHHh----CCCHHHHHHHHHHHhHHHHhc
Confidence 579999999999999999999 999999999999999 999999999999999999874
No 19
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.75 E-value=1.8e-19 Score=125.66 Aligned_cols=60 Identities=28% Similarity=0.428 Sum_probs=56.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHH
Q 027068 90 LTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (229)
Q Consensus 90 ~~rr~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~ 154 (229)
.++|.||.|++.|+.+||..|..+ +||+..++.+||..| ||++.+|+|||||+|+++||.
T Consensus 7 ~~rr~Rt~~t~~q~~~Le~~F~~n-~~P~~~~r~~La~~~----~l~~~~V~~WFqNrR~k~Kk~ 66 (67)
T d1ocpa_ 7 ARKRKRTSIENRVRWSLETMFLKC-PKPSLQQITHIANQL----GLEKDVVRVWFCNRRQKGKRS 66 (67)
T ss_dssp CSSSCCSSCCHHHHHHHHHHHSSC-SCCCHHHHHHHHHHH----TCCHHHHHHHHHHHHSSSSSC
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHc-cCCCHHHHHHHHHHH----cCCHHHHHHHhHHHHHHHhcC
Confidence 357889999999999999999999 999999999999999 999999999999999998763
No 20
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.75 E-value=2.7e-19 Score=119.23 Aligned_cols=53 Identities=23% Similarity=0.402 Sum_probs=51.3
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHH
Q 027068 95 RWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLK 152 (229)
Q Consensus 95 Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~K 152 (229)
||.||++|+.+||..|..+ +||+..++.+||..| ||++.+|++||||||+|.|
T Consensus 1 Rt~~s~~q~~~Le~~F~~~-~~P~~~~~~~LA~~l----gl~~~qV~~WFqNrR~k~K 53 (53)
T d1le8a_ 1 KSSISPQARAFLEQVFRRK-QSLNSKEKEEVAKKC----GITPLQVRVWFINKRMRSK 53 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHT----TSCHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHH----CCCHHHHHHHHHhhhhccC
Confidence 7899999999999999999 999999999999999 9999999999999999975
No 21
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.73 E-value=9.8e-19 Score=118.18 Aligned_cols=56 Identities=25% Similarity=0.389 Sum_probs=53.9
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHH
Q 027068 94 QRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (229)
Q Consensus 94 ~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~ 154 (229)
+||.|+.+|+.+||..|..+ +||+..++.+||..| ||++.+|++||||||+|+||.
T Consensus 1 kRT~~~~~q~~~Le~~F~~~-~~P~~~~~~~LA~~l----gL~~~qV~~WFqNrR~k~kk~ 56 (57)
T d1e3oc1 1 KRTSIETNIRVALEKSFMEN-QKPTSEDITLIAEQL----NMEKEVIRVWFSNRRQKEKRI 56 (57)
T ss_dssp CCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHcc
Confidence 58999999999999999999 999999999999999 999999999999999999874
No 22
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.73 E-value=9.2e-19 Score=123.28 Aligned_cols=58 Identities=24% Similarity=0.416 Sum_probs=54.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHH
Q 027068 91 TARQRWTPTPAQLQILEHVYDE-CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 153 (229)
Q Consensus 91 ~rr~Rt~~t~~Ql~~Le~~F~~-~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr 153 (229)
.++.|+.|+++|+.+||.+|.. + +||+..++++||..| ||++.+|++||||||+|.|+
T Consensus 7 ~~r~R~~~t~~Q~~~Le~~F~~~~-~~P~~~~~~~La~~l----gl~~~qV~~WFqNrR~k~kk 65 (71)
T d1wi3a_ 7 GPRSRTKISLEALGILQSFIHDVG-LYPDQEAIHTLSAQL----DLPKHTIIKFFQNQRYHVKH 65 (71)
T ss_dssp CCCCCCCCCSHHHHHHHHHHHHHC-SCCCHHHHHHHHHHS----CCCHHHHHHHHHHHHHHCCS
T ss_pred CCCCCccCCHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHh----CCCHHHHHHHhHhhHhhhcc
Confidence 5678999999999999999975 6 999999999999999 99999999999999999876
No 23
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=99.73 E-value=9.7e-19 Score=125.93 Aligned_cols=62 Identities=16% Similarity=0.139 Sum_probs=56.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhh----cCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHH
Q 027068 87 SQKLTARQRWTPTPAQLQILEHVYDE----CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 153 (229)
Q Consensus 87 ~~~~~rr~Rt~~t~~Ql~~Le~~F~~----~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr 153 (229)
...+.+|.||.||..|+..|+.+|+. + +||+..++++||..| ||++.+|+|||||+|++.|+
T Consensus 13 ~~~~~kR~Rt~ft~~Q~~~L~~~fe~~~~~~-~~p~~~~~~~la~~~----gl~~~~i~vWFqN~R~~~k~ 78 (80)
T d1wh7a_ 13 SGGTTKRFRTKFTAEQKEKMLAFAERLGWRI-QKHDDVAVEQFCAET----GVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCCSSCCCCCCCHHHHHHHHHHHHHHTSCC-CSSTTHHHHHHHHHS----CCCHHHHHHHHHTTSCCSCC
T ss_pred CccCCCCccccCCHHHHHHHHHHHHHhcccc-cCcCHHHHHHHHHHH----CCCHHHeeeecccCcCCCCC
Confidence 34456789999999999999999997 5 899999999999999 99999999999999988654
No 24
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.69 E-value=1.2e-17 Score=118.90 Aligned_cols=57 Identities=14% Similarity=0.376 Sum_probs=52.2
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhhCC
Q 027068 97 TPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (229)
Q Consensus 97 ~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~~~ 158 (229)
.+|++|+.+||..|..+ +||+..++++||..| ||++.+|++||||||++.|+.....
T Consensus 10 ~~T~~Q~~~Le~~F~~~-~~P~~~~r~~LA~~l----~l~~~~V~~WFqNrR~r~k~~~~~~ 66 (76)
T d2ecba1 10 EKTAEQLRVLQASFLNS-SVLTDEELNRLRAQT----KLTRREIDAWFTEKKKSKALKEEKM 66 (76)
T ss_dssp CCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHSCCSCC
T ss_pred CCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHh----CCCHHHHHHhHHHHHHHHHHHhHhh
Confidence 35899999999999999 999999999999999 9999999999999999987765544
No 25
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.68 E-value=4e-18 Score=112.07 Aligned_cols=50 Identities=26% Similarity=0.375 Sum_probs=48.7
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhh
Q 027068 94 QRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRR 148 (229)
Q Consensus 94 ~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR 148 (229)
+|+.||+.|+.+||..|+.+ +||+..++.+||..| ||++.+|++||||||
T Consensus 1 PRt~ft~~Q~~~Le~~F~~n-~~P~~~~~~~LA~~l----~l~~~~V~~WFqNrR 50 (50)
T d1s7ea1 1 PRLVFTDVQRRTLHAIFKEN-KRPSKELQITISQQL----GLELSTVSNFFMNAR 50 (50)
T ss_dssp CCSCCCHHHHHHHHHHTTSS-CSSTHHHHHHHHTTS----CSSSHHHHHHHHHCC
T ss_pred CCCCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHH----CcCHHHhhhcCCcCc
Confidence 58999999999999999999 999999999999999 999999999999998
No 26
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.67 E-value=3.9e-17 Score=115.39 Aligned_cols=60 Identities=23% Similarity=0.424 Sum_probs=55.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhh---cCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhh
Q 027068 92 ARQRWTPTPAQLQILEHVYDE---CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (229)
Q Consensus 92 rr~Rt~~t~~Ql~~Le~~F~~---~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~ 156 (229)
|++|+.|+++|+.+||.+|.. + +||+..++.+||..+ ||++.+|++||||+|+|.|+...
T Consensus 2 rk~R~~~t~~q~~~Le~~f~~~~~~-pYPs~~~k~~La~~~----gl~~~qv~~WF~N~R~r~k~~~~ 64 (73)
T d1pufb_ 2 RRKRRNFNKQATEILNEYFYSHLSN-PYPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKKNIG 64 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTS-CCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHH----CcCHHHhHHHHHHHHHHhcccch
Confidence 678999999999999999985 5 899999999999999 99999999999999999987543
No 27
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rattus rattus) [TaxId: 10117]}
Probab=99.66 E-value=1.1e-17 Score=119.71 Aligned_cols=60 Identities=32% Similarity=0.540 Sum_probs=54.4
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH-----------------hhCCCcccchhehhhhhhhHHHHHh
Q 027068 95 RWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELA-----------------KHGQISETNVYNWFQNRRARLKRKQ 155 (229)
Q Consensus 95 Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~-----------------~~~gls~~qV~vWFQNRRak~Kr~~ 155 (229)
|++|++.|+.+||.+|+.+ +||+..+|+.||..|. .+++|++.+|++||||||++.|++.
T Consensus 1 R~~~tp~Ql~~Le~~F~~n-~yPs~~~Re~LA~~ln~~~~~~~~~~~~~~~~~~~~~vt~~~V~~WF~NRR~~~kr~~ 77 (78)
T d1lfba_ 1 RFKWGPASQQILFQAYERQ-KNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAFRH 77 (78)
T ss_dssp CCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTSCCC
T ss_pred CccCCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhchhhhccccccccccccccccCCCHHHHHHHHHHHHHHHHHhc
Confidence 7899999999999999999 9999999999999992 2345999999999999999998754
No 28
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.65 E-value=9e-17 Score=114.33 Aligned_cols=58 Identities=24% Similarity=0.410 Sum_probs=53.3
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHHHhh
Q 027068 94 QRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (229)
Q Consensus 94 ~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr~~~ 156 (229)
.+..+|.+|+.+||..|..+ +||+..++.+||..| ||++.+|++||+|||+++|+.+.
T Consensus 6 ~~~r~T~eQ~~~Le~~F~~n-~~Ps~~~~~~La~~~----gL~~~qV~~WF~NrR~k~k~~~~ 63 (76)
T d2ecca1 6 SGKRKTKEQLAILKSFFLQC-QWARREDYQKLEQIT----GLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHhchH
Confidence 34457999999999999999 999999999999999 99999999999999999998543
No 29
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.65 E-value=1.9e-17 Score=109.69 Aligned_cols=51 Identities=24% Similarity=0.511 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHH
Q 027068 99 TPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 153 (229)
Q Consensus 99 t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr 153 (229)
|++|..+||..|..+++||+..++.+||..| ||++++|+|||||||+|+|+
T Consensus 1 T~~q~~iLE~~F~~~~~~P~~~~~~~LA~~~----~ls~~qV~~WFqNrR~k~k~ 51 (52)
T d1x2ma1 1 TAQPNAILEKVFTAITKHPDEKRLEGLSKQL----DWDVRSIQRWFRQRRNQEKP 51 (52)
T ss_dssp SSCHHHHHHHHHHTTCSSCCHHHHHHHHHHH----CSCHHHHHHHHHHHHHHSCC
T ss_pred ChhHHHHHHHHHHHcCCCcCHHHHHHHHHHH----CcCHHHHHHHHHhhhcccCc
Confidence 4678999999998744999999999999999 99999999999999999875
No 30
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.61 E-value=9.1e-17 Score=109.06 Aligned_cols=56 Identities=20% Similarity=0.382 Sum_probs=50.6
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHH
Q 027068 93 RQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLK 152 (229)
Q Consensus 93 r~Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~K 152 (229)
+.++.++.++..+||.+|..+++||+..++.+||..| ||++.+|++||||||+++|
T Consensus 3 k~~~~~k~~~~~iLE~~F~~~~~yPs~~~~~~LA~~l----gls~~qV~~WFqNrR~k~r 58 (59)
T d2cqxa1 3 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQL----DWSVRKIQCWFRHRRNQDK 58 (59)
T ss_dssp CCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCccccHHHHHHHHHcCCCcCHHHHHHHHHHH----CcCHHHHHHHHHhhhcccC
Confidence 4567788888899999998744899999999999999 9999999999999999976
No 31
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.57 E-value=1.1e-15 Score=103.86 Aligned_cols=53 Identities=21% Similarity=0.370 Sum_probs=49.1
Q ss_pred CCCHHHHHHHHHHHhhc--CCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHH
Q 027068 97 TPTPAQLQILEHVYDEC--KGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 153 (229)
Q Consensus 97 ~~t~~Ql~~Le~~F~~~--~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr 153 (229)
.|+.+|+.+|+.+|..+ +|||+..++.+||..+ ||++.+|++||||+|+|.|+
T Consensus 4 Rft~~q~~~L~~~f~~~~~~pyPs~~e~~~La~~~----gL~~~qV~~WF~N~R~r~K~ 58 (60)
T d1k61a_ 4 RFTKENVRILESWFAKNIENPYLDTKGLENLMKNT----SLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp SCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHH----CcCHHHHhHHhHhhcccccc
Confidence 39999999999999865 3799999999999999 99999999999999998875
No 32
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.54 E-value=3.8e-15 Score=101.87 Aligned_cols=58 Identities=17% Similarity=0.285 Sum_probs=52.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhc--CCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHH
Q 027068 91 TARQRWTPTPAQLQILEHVYDEC--KGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLK 152 (229)
Q Consensus 91 ~rr~Rt~~t~~Ql~~Le~~F~~~--~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~K 152 (229)
.+++|+.|+.+++.+|+.+|..+ +|||+..++..||..+ ||+..+|++||+|+|+|..
T Consensus 2 ~krkR~~~~~~~~~iL~~wf~~~~~nPyPs~~e~~~La~~~----~l~~~qI~~WF~N~R~R~l 61 (62)
T d1x2na1 2 GKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQT----NLTLLQVNNWFINARRRIL 61 (62)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHH----CcCHHHhHHHHHHHHHHhc
Confidence 35678899999999999999862 3999999999999999 9999999999999998864
No 33
>d1e3oc2 a.35.1.1 (C:1-75) Oct-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.44 E-value=1.7e-15 Score=105.56 Aligned_cols=60 Identities=12% Similarity=0.028 Sum_probs=57.9
Q ss_pred CcccCCchhhhhcccccCcCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 027068 7 NFQQGGEMERQFQQDGGDTSNGLCVKVMTDEQMELLRKQIAVYAMICEQLVQMHKVFSAQ 66 (229)
Q Consensus 7 ~~~~~~~~~~~~q~~~~~~~~~~~~~~~t~~q~~~lr~qi~~~~~ic~q~~~~~~~~~~~ 66 (229)
.|+++++.++++|+|||.|+|.+||.++||++||+|++...+++++|+..+.+.+|+.++
T Consensus 15 ~fk~rRi~LG~TQ~dVG~al~~l~g~~~SQttIcRFE~l~LS~kn~~kLkP~L~~WL~ea 74 (75)
T d1e3oc2 15 TFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMSKLKPLLEKWLNDA 74 (75)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccHHHHHHHHHHHcCcchhHHHHHHHHHhccCHHHHHHHHHHHHHHHHhc
Confidence 489999999999999999999999999999999999999999999999999999999764
No 34
>d1au7a2 a.35.1.1 (A:5-76) Pit-1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.41 E-value=4.2e-15 Score=102.65 Aligned_cols=61 Identities=8% Similarity=0.072 Sum_probs=58.6
Q ss_pred CcccCCchhhhhcccccCcCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcch
Q 027068 7 NFQQGGEMERQFQQDGGDTSNGLCVKVMTDEQMELLRKQIAVYAMICEQLVQMHKVFSAQN 67 (229)
Q Consensus 7 ~~~~~~~~~~~~q~~~~~~~~~~~~~~~t~~q~~~lr~qi~~~~~ic~q~~~~~~~~~~~~ 67 (229)
.|+|+++..+++|+|||.|+|.+||.++||++||+|++...+++++|+..|.+.+|+.++.
T Consensus 11 ~fk~rRi~LG~TQ~dVG~al~~l~g~~~SQttIcRFE~l~LS~kn~~klkPiL~~WL~eaE 71 (72)
T d1au7a2 11 EFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFENLQLSFKNACKLKAILSKWLEEAE 71 (72)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHTTSSCCCHHHHHHHHTTCSBHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhccCccHHHHHHHHHHhcCcccchhHHHHHHhcccCHHHHHHHHHHHHHHHHHhc
Confidence 5899999999999999999999999999999999999999999999999999999998754
No 35
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=80.64 E-value=0.72 Score=27.92 Aligned_cols=41 Identities=12% Similarity=0.289 Sum_probs=34.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhh
Q 027068 95 RWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQ 145 (229)
Q Consensus 95 Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQ 145 (229)
+..+|++|+......+... . + +.+||..+ |++...|+.||.
T Consensus 3 ~~~lt~~q~~~a~~l~~~G-~-s----~~~iA~~~----gVSr~TiYry~p 43 (47)
T d1ijwc_ 3 PRAINKHEQEQISRLLEKG-H-P----RQQLAIIF----GIGVSTLYRYFP 43 (47)
T ss_dssp CCSSCHHHHHHHHHHHHTT-C-C----HHHHHHHH----TCCHHHHHHHSC
T ss_pred CCcCCHHHHHHHHHHHHCC-C-C----HHHHHHHH----CcCHHHHHhhCC
Confidence 3568999999999999876 3 2 66899999 999999999984
No 36
>d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=79.42 E-value=1.4 Score=28.48 Aligned_cols=47 Identities=17% Similarity=0.191 Sum_probs=37.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhh
Q 027068 95 RWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRA 149 (229)
Q Consensus 95 Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRa 149 (229)
|..+|..+...+-..|+.+ +... ..+||..+ ||+...|..|..|+..
T Consensus 5 Rk~LT~~eK~~ii~~~e~g-~k~s---q~eIA~~f----Gv~~STvs~IlKnK~k 51 (66)
T d1hlva1 5 RRQLTFREKSRIIQEVEEN-PDLR---KGEIARRF----NIPPSTLSTILKNKRA 51 (66)
T ss_dssp SCCCCHHHHHHHHHHHHHC-TTSC---HHHHHHHH----TCCHHHHHHHHHTHHH
T ss_pred cccCCHHHHHHHHHHHHcC-Ccch---HHHHHHHh----CCChhHHHHHHHHHHH
Confidence 4468998888888889888 4333 45799999 9999999999998543
No 37
>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=48.13 E-value=7.2 Score=25.68 Aligned_cols=43 Identities=19% Similarity=0.348 Sum_probs=30.2
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhh
Q 027068 95 RWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQ 145 (229)
Q Consensus 95 Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQ 145 (229)
|..|+.+.....-..+.....++ ..++|..| ||++..|..|-+
T Consensus 3 rk~Ys~EfK~~aV~l~~~~~g~s----~~~vA~~l----GIs~~tl~~W~k 45 (89)
T d2jn6a1 3 TKTYSEEFKRDAVALYENSDGAS----LQQIANDL----GINRVTLKNWII 45 (89)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGSC----HHHHHHHH----TSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCc----HHHHHHHH----CCCHHHHHHHHH
Confidence 44689987776666554320122 45799999 999999999964
No 38
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=47.71 E-value=7.6 Score=23.98 Aligned_cols=46 Identities=13% Similarity=0.159 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHH
Q 027068 98 PTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 153 (229)
Q Consensus 98 ~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr 153 (229)
+++.+..++.-.|-.+ ....++|..| |+++..|+.....-|.+-|+
T Consensus 22 L~~~~r~v~~l~~~~~------~s~~eIA~~l----gis~~tv~~~~~ra~~~Lr~ 67 (71)
T d1rp3a2 22 LPEREKLVIQLIFYEE------LPAKEVAKIL----ETSVSRVSQLKAKALERLRE 67 (71)
T ss_dssp SCHHHHHHHHHHHTSC------CCHHHHHHHT----TSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhHh------CCHHHHHHHH----CCCHHHHHHHHHHHHHHHHH
Confidence 5677888888777655 2356889999 99999999877655555544
No 39
>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=46.89 E-value=7.9 Score=23.95 Aligned_cols=46 Identities=7% Similarity=-0.044 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHHH
Q 027068 98 PTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 153 (229)
Q Consensus 98 ~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~Kr 153 (229)
+++.+..++.-.|-.+ . ...++|..+ |++...|++....-|.+-|.
T Consensus 19 Lp~~~r~v~~l~~~~~-~-----s~~eIA~~l----gis~~tv~~~l~ra~~~Lr~ 64 (68)
T d1or7a1 19 LPEDLRMAITLRELDG-L-----SYEEIAAIM----DCPVGTVRSRIFRAREAIDN 64 (68)
T ss_dssp SCHHHHHHHHHHHTTC-C-----CHHHHHHHT----TSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhC-C-----CHHHHHHHH----CcCHHHHHHHHHHHHHHHHH
Confidence 3566777777776655 1 245889999 99999999999876666554
No 40
>d2iu5a1 a.4.1.9 (A:1-71) Transcriptional activator DhaS {Lactococcus lactis [TaxId: 1358]}
Probab=37.52 E-value=11 Score=23.47 Aligned_cols=41 Identities=17% Similarity=0.372 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhh
Q 027068 102 QLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRR 148 (229)
Q Consensus 102 Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR 148 (229)
-+..+...|... . ........||..+ |++...++..|.|+-
T Consensus 11 I~~aa~~l~~~~-G-~~~~sv~~Ia~~a----gvs~~t~Y~~F~~k~ 51 (71)
T d2iu5a1 11 IAKAFKDLMQSN-A-YHQISVSDIMQTA----KIRRQTFYNYFQNQE 51 (71)
T ss_dssp HHHHHHHHHHHS-C-GGGCCHHHHHHHH----TSCGGGGGGTCSSHH
T ss_pred HHHHHHHHHHHc-C-cccCCHHHHHHHh----CccccHHHHHcCCHH
Confidence 345566667777 5 4445677899999 999999999999864
No 41
>d2hkua1 a.4.1.9 (A:18-87) Putative transcriptional regulator RHA1_ro03468 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=35.21 E-value=9.9 Score=23.72 Aligned_cols=40 Identities=13% Similarity=0.230 Sum_probs=31.4
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhh
Q 027068 103 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRA 149 (229)
Q Consensus 103 l~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRa 149 (229)
+..-...|... .| . .....||... |++...|+.+|.|+-.
T Consensus 7 l~aA~~l~~~~-G~-~-~t~~~Ia~~a----gvs~~~~Y~~F~~K~~ 46 (70)
T d2hkua1 7 FTAATELFLEH-GE-G-VPITQICAAA----GAHPNQVTYYYGSKER 46 (70)
T ss_dssp HHHHHHHHHHH-CT-T-SCHHHHHHHH----TCCHHHHHHHHSSHHH
T ss_pred HHHHHHHHHhc-cc-C-chHHHHHHHH----CCChhhHHhcCCCHHH
Confidence 33445668777 66 5 4688999999 9999999999998754
No 42
>d2fq4a1 a.4.1.9 (A:9-77) Transcriptional regulator BC3163 {Bacillus cereus [TaxId: 1396]}
Probab=34.35 E-value=9.3 Score=23.76 Aligned_cols=42 Identities=19% Similarity=0.443 Sum_probs=31.7
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhH
Q 027068 103 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 150 (229)
Q Consensus 103 l~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak 150 (229)
+......|... . ........||... |++...|+..|.|+-.=
T Consensus 10 l~aa~~l~~~~-G-~~~~t~~~Ia~~a----gvs~~~~y~~F~~k~~L 51 (69)
T d2fq4a1 10 LSASYELLLES-G-FKAVTVDKIAERA----KVSKATIYKWWPNKAAV 51 (69)
T ss_dssp HHHHHHHHHHH-C-TTTCCHHHHHHHH----TCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHh-C-cccCCHHHHHHHH----CcCHHHHHHHCCCHHHH
Confidence 34455567777 5 4555677899999 99999999999997653
No 43
>d1fsea_ a.4.6.2 (A:) Germination protein GerE {Bacillus subtilis [TaxId: 1423]}
Probab=33.00 E-value=31 Score=21.00 Aligned_cols=44 Identities=23% Similarity=0.252 Sum_probs=31.3
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhh
Q 027068 95 RWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRA 149 (229)
Q Consensus 95 Rt~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRa 149 (229)
|+.+|+.+..+|.-.- .. +. -.++|..| |+++..|+.-..+=+.
T Consensus 2 ~p~LT~rE~~vl~l~~-~G--~s----~~eIA~~L----~is~~TV~~~~~~i~~ 45 (67)
T d1fsea_ 2 KPLLTKREREVFELLV-QD--KT----TKEIASEL----FISEKTVRNHISNAMQ 45 (67)
T ss_dssp CCCCCHHHHHHHHHHT-TT--CC----HHHHHHHH----TSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH-cc--CC----HHHHHHHH----CCCHHHHHHHHHHHHH
Confidence 4568999999986543 33 23 34899999 9999999876654333
No 44
>d2fd5a1 a.4.1.9 (A:1-76) Probable transcriptional regulator PA3133 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=30.04 E-value=14 Score=23.00 Aligned_cols=41 Identities=17% Similarity=0.275 Sum_probs=30.7
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhh
Q 027068 103 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRA 149 (229)
Q Consensus 103 l~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRa 149 (229)
+......|... . ........||+.. |++..-|+.+|.|+-.
T Consensus 13 l~aa~~l~~~~-G-~~~~si~~Ia~~a----gvs~~t~Y~~F~~Ke~ 53 (76)
T d2fd5a1 13 LGAATQALLER-G-AVEPSVGEVMGAA----GLTVGGFYAHFQSKDA 53 (76)
T ss_dssp HHHHHHHHHHH-T-TTSCCHHHHHHHT----TCCGGGGGGTCSCHHH
T ss_pred HHHHHHHHHHh-C-cccccHHHHHHHh----CCCccchhhcCCCHHH
Confidence 44445557766 5 4455677899998 9999999999998754
No 45
>d1ui5a1 a.4.1.9 (A:5-75) A-factor receptor homolog CprB {Streptomyces coelicolor [TaxId: 1902]}
Probab=29.24 E-value=13 Score=23.12 Aligned_cols=39 Identities=13% Similarity=0.342 Sum_probs=29.9
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhh
Q 027068 104 QILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRR 148 (229)
Q Consensus 104 ~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR 148 (229)
..-...|... . +.......||+.. |++..-++.+|.|+-
T Consensus 12 ~aa~~l~~~~-G-~~~~si~~Ia~~a----gvs~~~~y~~F~sK~ 50 (71)
T d1ui5a1 12 GAAADLFDRR-G-YESTTLSEIVAHA----GVTKGALYFHFAAKE 50 (71)
T ss_dssp HHHHHHHHHH-C-TTTCCHHHHHHHH----TCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHh-C-ccccCHHHHHHHH----CcCHhHHHHHCcCHH
Confidence 3344557766 5 5555678899999 999999999999864
No 46
>d1ku3a_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermus aquaticus [TaxId: 271]}
Probab=28.43 E-value=20 Score=22.02 Aligned_cols=39 Identities=8% Similarity=0.151 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchh
Q 027068 97 TPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVY 141 (229)
Q Consensus 97 ~~t~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~ 141 (229)
.+++.+..+|...|-.+ . -......++|..| ||+...|.
T Consensus 8 ~L~~rer~Ii~~ryGl~-~-~~~~tl~eIa~~l----giS~erVr 46 (61)
T d1ku3a_ 8 KLSEREAMVLKMRKGLI-D-GREHTLEEVGAYF----GVTRERIR 46 (61)
T ss_dssp TSCHHHHHHHHHHHTTT-T-SSCCCHHHHHHHH----TCCHHHHH
T ss_pred cCCHHHHHHHHHHhCCC-C-CCCCCHHHHHHHH----CCCHHHHH
Confidence 47889999999999665 2 1224567899999 99998775
No 47
>d2g3ba1 a.4.1.9 (A:2-73) Putative transcriptional regulator {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=27.43 E-value=6.5 Score=24.66 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=30.6
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhH
Q 027068 104 QILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 150 (229)
Q Consensus 104 ~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak 150 (229)
......|... . +.......||+.. |++..-|+.+|.|+-.=
T Consensus 9 ~aa~~l~~~~-G-~~~~ti~~Ia~~a----gvs~~~ly~~F~~K~~L 49 (72)
T d2g3ba1 9 KASATAIAQR-G-IRGLRVNDVAEVA----GVSPGLLYYHFKDRIGL 49 (72)
T ss_dssp HHHHHHHHHH-H-HHHCCHHHHHHHH----TSCHHHHHHHHCSHHHH
T ss_pred HHHHHHHHHh-C-cccCCHHHHHHHh----CcCHHHHHHHCcCHHHH
Confidence 3444556655 3 5555678899999 99999999999997654
No 48
>d1t56a1 a.4.1.9 (A:22-94) Ethr repressor {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=26.98 E-value=12 Score=23.06 Aligned_cols=39 Identities=18% Similarity=0.345 Sum_probs=29.4
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhh
Q 027068 105 ILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRA 149 (229)
Q Consensus 105 ~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRa 149 (229)
.-...|... . ........||+.+ |++...|+..|.|+-.
T Consensus 11 aa~~l~~~~-G-~~~~t~~~Ia~~a----gvs~~t~Y~~F~~K~~ 49 (73)
T d1t56a1 11 TAENLLEDR-P-LADISVDDLAKGA----GISRPTFYFYFPSKEA 49 (73)
T ss_dssp HHHHHHHHS-C-GGGCCHHHHHHHH----TCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHh-C-cccCCHHHHHHHh----CCCHHHHHHHCcCHHH
Confidence 334456666 4 4555677899999 9999999999998654
No 49
>d2gena1 a.4.1.9 (A:6-75) Probable transcriptional regulator PA1836 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=25.97 E-value=16 Score=22.29 Aligned_cols=38 Identities=18% Similarity=0.264 Sum_probs=28.8
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhh
Q 027068 105 ILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRR 148 (229)
Q Consensus 105 ~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR 148 (229)
.-...|... . +.......||+.+ |++...++.+|.|+-
T Consensus 8 aa~~l~~~~-G-~~~~si~~Ia~~a----gvs~~t~Y~~F~sK~ 45 (70)
T d2gena1 8 AALACFSEH-G-VDATTIEMIRDRS----GASIGSLYHHFGNKE 45 (70)
T ss_dssp HHHHHHHHH-C-TTTCCHHHHHHHH----CCCHHHHHHHTCSHH
T ss_pred HHHHHHHHh-C-cccCCHHHHHHHH----CcCHHHHHHHCCCHH
Confidence 344556555 4 5555677899999 999999999999864
No 50
>d1rkta1 a.4.1.9 (A:2-82) Hypothetical transcriptional regulator YfiR {Bacillus subtilis [TaxId: 1423]}
Probab=25.87 E-value=16 Score=23.05 Aligned_cols=40 Identities=20% Similarity=0.357 Sum_probs=30.1
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhh
Q 027068 104 QILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRA 149 (229)
Q Consensus 104 ~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRa 149 (229)
......|... . ........||... |++...++..|.|+-.
T Consensus 18 ~aa~~l~~~~-G-~~~~ti~~Ia~~a----gvs~~t~Y~~F~~K~~ 57 (81)
T d1rkta1 18 EAAKTVFKRK-G-FELTTMKDVVEES----GFSRGGVYLYFSSTEE 57 (81)
T ss_dssp HHHHHHHHHH-C-STTCCHHHHHHHH----TSCHHHHHTTCSCHHH
T ss_pred HHHHHHHHHh-C-cccCCHHHHHHHh----CcCHHHHHHHCcCHHH
Confidence 3444456666 4 4555678899999 9999999999998654
No 51
>d2np5a1 a.4.1.9 (A:9-77) Transcriptional regulator RHA1_ro04179 {Rhodococcus sp. [TaxId: 1831]}
Probab=24.74 E-value=14 Score=22.56 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=29.8
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhh
Q 027068 104 QILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRA 149 (229)
Q Consensus 104 ~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRa 149 (229)
...-..|... . ........||+.+ |++..-|+..|.||-.
T Consensus 8 ~aa~~l~~~~-G-~~~~ti~~Ia~~a----gvs~~~iy~~F~sK~~ 47 (69)
T d2np5a1 8 AALFDVAAES-G-LEGASVREVAKRA----GVSIGAVQHHFSTKDE 47 (69)
T ss_dssp HHHHHHHHHH-C-GGGCCHHHHHHHH----TCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHh-C-ccccCHHHHHHHh----CCCHHHHHHHCcCHHH
Confidence 3444556655 4 4555677899999 9999999999998754
No 52
>d2fbqa1 a.4.1.9 (A:2-80) Transcriptional regulator PsrA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=24.65 E-value=17 Score=22.74 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=30.1
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhh
Q 027068 105 ILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRA 149 (229)
Q Consensus 105 ~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRa 149 (229)
.....|... . ........||+.+ |++..-|+..|.++..
T Consensus 12 aa~~~~~~~-G-~~~~ti~~Ia~~a----gvs~~s~y~~F~~K~~ 50 (79)
T d2fbqa1 12 AAEQLFAEK-G-FAETSLRLITSKA----GVNLAAVNYHFGSKKA 50 (79)
T ss_dssp HHHHHHHHH-C-STTCCHHHHHHHH----TSCHHHHHHHTCSHHH
T ss_pred HHHHHHHHh-C-cccccHHHHHHHH----CcChhHHHHHCcCHHH
Confidence 344556666 4 5556778899999 9999999999998754
No 53
>d1zk8a1 a.4.1.9 (A:6-77) Transcriptional regulator BC5000 {Bacillus cereus [TaxId: 1396]}
Probab=24.22 E-value=16 Score=22.60 Aligned_cols=40 Identities=13% Similarity=0.328 Sum_probs=30.7
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhh
Q 027068 103 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRR 148 (229)
Q Consensus 103 l~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR 148 (229)
+......|... . +......+||+.+ |++..-++..|.|+-
T Consensus 9 l~aa~~l~~~~-G-~~~~t~~~Ia~~a----gvs~~slY~yF~~k~ 48 (72)
T d1zk8a1 9 VETAAEIADAN-G-VQEVTLASLAQTL----GVRSPSLYNHVKGLQ 48 (72)
T ss_dssp HHHHHHHHHHH-C-GGGCCHHHHHHHH----TSCHHHHTTTCSSHH
T ss_pred HHHHHHHHHHh-C-CCcccHHHHHHHh----CCCHHHHHHHCcCHH
Confidence 34555667766 4 5555677899999 999999999999864
No 54
>d3c07a1 a.4.1.9 (A:15-89) Putative transcriptional regulator SCO4850 {Streptomyces coelicolor [TaxId: 1902]}
Probab=23.76 E-value=19 Score=22.18 Aligned_cols=40 Identities=18% Similarity=0.400 Sum_probs=30.2
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhh
Q 027068 104 QILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRA 149 (229)
Q Consensus 104 ~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRa 149 (229)
......|... . ........||... |++...|+..|.|+-.
T Consensus 12 ~aa~~l~~~~-G-~~~~t~~~Ia~~a----gvs~~~~y~~F~~k~~ 51 (75)
T d3c07a1 12 ETAMRLFQER-G-YDRTTMRAIAQEA----GVSVGNAYYYFAGKEH 51 (75)
T ss_dssp HHHHHHHHHT-C-STTCCHHHHHHHH----TSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHh-C-cccCCHHHHHHHH----CcCHHHHHHHCcCHHH
Confidence 3444556666 4 5556778899999 9999999999998654
No 55
>d1jt6a1 a.4.1.9 (A:2-72) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=23.05 E-value=16 Score=22.55 Aligned_cols=39 Identities=13% Similarity=0.284 Sum_probs=29.4
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhh
Q 027068 105 ILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRA 149 (229)
Q Consensus 105 ~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRa 149 (229)
.-...|... . ........||+.+ |++...++..|.|+-.
T Consensus 9 aa~~l~~~~-G-~~~~s~~~Ia~~a----gvs~~~~y~~F~~K~~ 47 (71)
T d1jt6a1 9 VAKELFIKN-G-YNATTTGEIVKLS----ESSKGNLYYHFKTKEN 47 (71)
T ss_dssp HHHHHHHHH-C-TTTCCHHHHHHHT----TCCHHHHHHHHSSHHH
T ss_pred HHHHHHHHh-C-ccccCHHHHHHHH----CcCHhHHHHHCcCHHH
Confidence 344556666 4 4555677899998 9999999999998643
No 56
>d1fi6a_ a.39.1.6 (A:) Reps1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.02 E-value=33 Score=22.04 Aligned_cols=45 Identities=11% Similarity=0.192 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHHHHHhhc----CCCCCHHHHHHHHHHHHhhCCCcccchhehh
Q 027068 96 WTPTPAQLQILEHVYDEC----KGTPRKQKIQDMTAELAKHGQISETNVYNWF 144 (229)
Q Consensus 96 t~~t~~Ql~~Le~~F~~~----~~yP~~~~r~~LA~~L~~~~gls~~qV~vWF 144 (229)
|.+|++++..++..|... +.+.+..+...+-... ||+..++...|
T Consensus 1 w~ls~ee~~~y~~~F~~~D~d~~G~i~~~e~~~~l~~~----~l~~~~l~~i~ 49 (92)
T d1fi6a_ 1 WKITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKS----KLPILELSHIW 49 (92)
T ss_dssp CCCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHH----SSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccchhHHHHHHHHHHc----cCCHHHHHHHH
Confidence 468899999999999864 2456777777777777 89887766554
No 57
>d2g7la1 a.4.1.9 (A:16-83) Putative transcriptional regulator SCO7704 {Streptomyces coelicolor [TaxId: 1902]}
Probab=22.89 E-value=15 Score=22.57 Aligned_cols=42 Identities=14% Similarity=0.251 Sum_probs=31.6
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhH
Q 027068 103 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 150 (229)
Q Consensus 103 l~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak 150 (229)
+......|... . +.......||+.+ |++..-|+.-|.|+-.=
T Consensus 10 l~aa~~l~~~~-g-~~~~si~~ia~~~----gvs~~~~y~hF~~K~~L 51 (68)
T d2g7la1 10 VDTAVALMRAE-G-LEKVTMRRLAQEL----DTGPASLYVYVANTAEL 51 (68)
T ss_dssp HHHHHHHHHHH-C-SSSCCHHHHHHHT----TSCHHHHTTTCCSHHHH
T ss_pred HHHHHHHHHHh-C-cccCCHHHHHHHH----CcCHhHhhHHCcCHHHH
Confidence 33445556666 4 5556778899999 99999999999997543
No 58
>d2o7ta1 a.4.1.9 (A:1-78) Transcriptional regulator Cgl1640/Cg1846 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=22.34 E-value=17 Score=22.90 Aligned_cols=39 Identities=10% Similarity=0.245 Sum_probs=29.4
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhh
Q 027068 104 QILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRR 148 (229)
Q Consensus 104 ~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR 148 (229)
......|... . .......+||+.. |++..-++..|.||=
T Consensus 14 ~aa~~l~~~~-G-~~~~t~~~Ia~~a----gvs~~t~y~~F~sKe 52 (78)
T d2o7ta1 14 TTTCNLYRTH-H-HDSLTMENIAEQA----GVGVATLYRNFPDRF 52 (78)
T ss_dssp HHHHHHHHHS-C-GGGCCHHHHHHHH----TCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHh-C-ccccCHHHHHHHh----CCCHHHHHHHCcCHH
Confidence 3444557666 5 4455677899999 999999999998863
No 59
>d2gfna1 a.4.1.9 (A:4-80) Probable transcriptional regulator RHA1_ro04631 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=22.27 E-value=17 Score=22.68 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=28.2
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhh
Q 027068 107 EHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRA 149 (229)
Q Consensus 107 e~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRa 149 (229)
...|... . +.......||+.+ |++...++..|.|+-.
T Consensus 16 ~~l~~~~-G-~~~~s~~~Ia~~a----gvs~~~lY~~F~~K~~ 52 (77)
T d2gfna1 16 LALIARE-G-ISAVTTRAVAEES----GWSTGVLNHYFGSRHE 52 (77)
T ss_dssp HHHHHHH-C-GGGCCHHHHHHHH----SSCHHHHHHHTSSHHH
T ss_pred HHHHHHh-C-ccccCHHHHHHHH----CCCHHHHHHHCcCHHH
Confidence 3446666 4 4445677899999 9999999999998754
No 60
>d2hyja1 a.4.1.9 (A:8-82) Putative transcriptional regulator SCO4940 {Streptomyces coelicolor [TaxId: 1902]}
Probab=21.69 E-value=18 Score=22.48 Aligned_cols=40 Identities=20% Similarity=0.281 Sum_probs=29.5
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhh
Q 027068 104 QILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRA 149 (229)
Q Consensus 104 ~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRa 149 (229)
......|... . +.......||+.+ |++...|+..|.|+-.
T Consensus 12 ~aa~~l~~~~-G-~~~~t~~~Ia~~a----gvs~~~~Y~~F~~K~~ 51 (75)
T d2hyja1 12 GRAAEIASEE-G-LDGITIGRLAEEL----EMSKSGVHKHFGTKET 51 (75)
T ss_dssp HHHHHHHHHH-C-GGGCCHHHHHHHH----TCCHHHHHTTCSSHHH
T ss_pred HHHHHHHHHh-C-cccCcHHHHHHHH----CcCHHHHHHHCcCHHH
Confidence 3344455555 3 5555677899999 9999999999998754
No 61
>d1c07a_ a.39.1.6 (A:) Eps15 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.32 E-value=23 Score=23.12 Aligned_cols=46 Identities=11% Similarity=0.303 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHHHHhhc----CCCCCHHHHHHHHHHHHhhCCCcccchhehhh
Q 027068 96 WTPTPAQLQILEHVYDEC----KGTPRKQKIQDMTAELAKHGQISETNVYNWFQ 145 (229)
Q Consensus 96 t~~t~~Ql~~Le~~F~~~----~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQ 145 (229)
|.+|++++..++..|... +.+.+..+...+...+ ||+...+...|.
T Consensus 2 w~lt~~e~~~~~~~F~~~D~d~~G~is~~e~~~~l~~~----~l~~~~l~~i~~ 51 (95)
T d1c07a_ 2 WVVSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKT----GLPSTLLAHIWS 51 (95)
T ss_dssp CSSCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTT----TCCHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHhc----CCCHHHHHHHHH
Confidence 567889999999999653 2467777777666666 888887776663
No 62
>d1v7ba1 a.4.1.9 (A:1-74) Transcriptional regulator Cgl2612 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=21.12 E-value=20 Score=22.10 Aligned_cols=42 Identities=14% Similarity=0.178 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhh
Q 027068 102 QLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRA 149 (229)
Q Consensus 102 Ql~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRa 149 (229)
-+......|... . ........||+.+ |++...|+..|.|+..
T Consensus 9 Il~aa~~l~~~~-G-~~~~s~~~Ia~~a----gvs~~t~Y~~F~~K~~ 50 (74)
T d1v7ba1 9 ILRTAIDYIGEY-S-LETLSYDSLAEAT----GLSKSGLIYHFPSRHA 50 (74)
T ss_dssp HHHHHHHHHHHS-C-STTCCHHHHHHHH----CSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHHh-C-ccccCHHHHHHHh----CcCcchHhhhCCCHHH
Confidence 344555567666 4 5555677899999 9999999999998764
No 63
>d2fx0a1 a.4.1.9 (A:4-76) Hemolysin II regulatory protein, HlyIIR {Bacillus cereus [TaxId: 1396]}
Probab=20.31 E-value=25 Score=21.79 Aligned_cols=44 Identities=16% Similarity=0.283 Sum_probs=31.8
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccchhehhhhhhhHHH
Q 027068 103 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLK 152 (229)
Q Consensus 103 l~~Le~~F~~~~~yP~~~~r~~LA~~L~~~~gls~~qV~vWFQNRRak~K 152 (229)
+......|... . .......+||... |++..-|+..|.|+-.=..
T Consensus 10 l~aa~~l~~~~-G-~~~~si~~Ia~~a----gvs~~~~Y~~F~~K~~L~~ 53 (73)
T d2fx0a1 10 LKAAKKKFGER-G-YEGTSIQEIAKEA----KVNVAMASYYFNGKENLYY 53 (73)
T ss_dssp HHHHHHHHHHH-C-TTTCCHHHHHHHH----TSCHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHHHHh-C-cccCcHHHHHHHH----CcChhHHHHHCcCHHHHHH
Confidence 33445556666 4 4444677899999 9999999999998765443
Done!