BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027070
(228 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8RWG8|RBP1B_ARATH Ran-binding protein 1 homolog b OS=Arabidopsis thaliana GN=RANBP1B
PE=1 SV=2
Length = 217
Score = 293 bits (751), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 154/201 (76%), Positives = 174/201 (86%), Gaps = 6/201 (2%)
Query: 11 EEEVPHNEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAG 70
EEE NEDEDTGAQVAPIV+LEEVAVTTGEEDED ILDLK+KLYRFDKDG+QWKERGAG
Sbjct: 15 EEETGANEDEDTGAQVAPIVRLEEVAVTTGEEDEDTILDLKSKLYRFDKDGSQWKERGAG 74
Query: 71 TVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELK 130
TVK LKH+V+GK+RLVMRQSKTLKICANHLV MSVQEHAGNDKSCVWHA D++DGELK
Sbjct: 75 TVKFLKHRVSGKIRLVMRQSKTLKICANHLVGSGMSVQEHAGNDKSCVWHARDFSDGELK 134
Query: 131 DELFCIRFGSVENCKSFMEMVHEVAESQKKKEENKDASATAGLLEKLSVEENKTEDKS-- 188
DELFCIRF SVENCK+FM+ EVAES+++KEE+KDAS TAGLLEKL+VEE ++E K
Sbjct: 135 DELFCIRFASVENCKAFMQKFKEVAESEEEKEESKDASDTAGLLEKLTVEEKESEKKPVE 194
Query: 189 RAEE----EVPKEEKEEEEVP 205
+AEE E +E+K EE VP
Sbjct: 195 KAEENKKSEAVEEKKTEESVP 215
>sp|P92985|RBP1C_ARATH Ran-binding protein 1 homolog c OS=Arabidopsis thaliana GN=RANBP1C
PE=2 SV=1
Length = 219
Score = 289 bits (740), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 138/183 (75%), Positives = 159/183 (86%), Gaps = 1/183 (0%)
Query: 1 MAST-TEGDHREEEVPHNEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDK 59
MAST E ++RE+E NEDEDTGAQVAPIV+LEEVAVTTGEEDEDA+LDLK+K+YRFDK
Sbjct: 1 MASTEPERENREDETEVNEDEDTGAQVAPIVRLEEVAVTTGEEDEDAVLDLKSKMYRFDK 60
Query: 60 DGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVW 119
+GNQWKERGAGTVKLLKHK TGKVRLVMRQSKTLKICANHL+ MSVQEH+GN+KSC+W
Sbjct: 61 EGNQWKERGAGTVKLLKHKETGKVRLVMRQSKTLKICANHLISSGMSVQEHSGNEKSCLW 120
Query: 120 HAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQKKKEENKDASATAGLLEKLSV 179
HA D++DGELKDELFCIRF S+ENCK+FME E+AESQ+ +E+ AGL+E LSV
Sbjct: 121 HATDFSDGELKDELFCIRFASIENCKTFMEKFTEIAESQQVGKESTQGDEAAGLIENLSV 180
Query: 180 EEN 182
EEN
Sbjct: 181 EEN 183
>sp|Q9LMK7|RBP1A_ARATH Ran-binding protein 1 homolog a OS=Arabidopsis thaliana GN=RANBP1A
PE=1 SV=1
Length = 228
Score = 278 bits (712), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 140/175 (80%), Positives = 156/175 (89%), Gaps = 1/175 (0%)
Query: 6 EGDHR-EEEVPHNEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQW 64
E +HR EEE NEDEDTGAQVAPIV+LEEVAVTTGEEDEDA+LDLK+KLYRFDKD NQW
Sbjct: 7 EHEHRDEEEAGANEDEDTGAQVAPIVRLEEVAVTTGEEDEDAVLDLKSKLYRFDKDANQW 66
Query: 65 KERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADY 124
KERGAGTVK LKHK TGK+RLVMRQSKTLKICANH V MSVQEH GN+KSCVWHA D+
Sbjct: 67 KERGAGTVKFLKHKNTGKIRLVMRQSKTLKICANHFVKSGMSVQEHVGNEKSCVWHARDF 126
Query: 125 ADGELKDELFCIRFGSVENCKSFMEMVHEVAESQKKKEENKDASATAGLLEKLSV 179
ADGELKDELFCIRF S+ENCK+FM+ EVAES+++KEE+KDA+ TAGLLEKL+V
Sbjct: 127 ADGELKDELFCIRFASIENCKTFMQKFKEVAESEEEKEESKDAADTAGLLEKLTV 181
>sp|P43487|RANG_HUMAN Ran-specific GTPase-activating protein OS=Homo sapiens GN=RANBP1
PE=1 SV=1
Length = 201
Score = 140 bits (352), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 81/171 (47%), Positives = 107/171 (62%), Gaps = 9/171 (5%)
Query: 25 QVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRF--DKDGNQWKERGAGTVKLLKHKVTGK 82
Q PIV L E + T EEDE+ + ++AKL+RF + D +WKERG G VKLLKHK G
Sbjct: 26 QFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKEKGA 85
Query: 83 VRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA-ADYADGELKDELFCIRFGSV 141
+RL+MR+ KTLKICANH + PMM ++ +AG+D++ VW+ AD+AD K EL IRF +
Sbjct: 86 IRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADFADECPKPELLAIRFLNA 145
Query: 142 ENCKSFM----EMVHEVAESQKKKEENKD--ASATAGLLEKLSVEENKTED 186
EN + F E E+ E +KK K+ A A LE LSV+E ED
Sbjct: 146 ENAQKFKTKFEECRKEIEEREKKAGSGKNDHAEKVAEKLEALSVKEETKED 196
>sp|Q9ERU9|RBP2_MOUSE E3 SUMO-protein ligase RanBP2 OS=Mus musculus GN=Ranbp2 PE=1 SV=2
Length = 3053
Score = 137 bits (346), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 65/133 (48%), Positives = 89/133 (66%), Gaps = 1/133 (0%)
Query: 16 HNEDEDTGAQVAPIVKL-EEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKL 74
H ++ED G P+V L +++ V TGEEDE+ +AKL+RFD + +WKERG G VK+
Sbjct: 1156 HGDEEDDGPHFEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDGESKEWKERGIGNVKI 1215
Query: 75 LKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELF 134
L+HK +GK+RL+MR+ + LKICANH + P M + +AG+D+S VWHA DYAD K E
Sbjct: 1216 LRHKTSGKIRLLMRREQVLKICANHYISPDMKLTPNAGSDRSFVWHALDYADELPKPEQL 1275
Query: 135 CIRFGSVENCKSF 147
IRF + E F
Sbjct: 1276 AIRFKTPEEAALF 1288
Score = 124 bits (311), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 89/140 (63%), Gaps = 4/140 (2%)
Query: 8 DHREEEVPHNEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKER 67
D +E+V HNED PIV L EV V +GEEDE+ + +AKLYR+D+D +QWKER
Sbjct: 2727 DGSDEDVVHNED----IHFEPIVSLPEVEVKSGEEDEEVLFKERAKLYRWDRDVSQWKER 2782
Query: 68 GAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADG 127
G G +K+L H + R++MR+ + K+CANH++ M ++ ++ + VW A+DYADG
Sbjct: 2783 GIGDIKILWHTMKKYYRILMRRDQVFKVCANHVITKAMELKPLNVSNNALVWTASDYADG 2842
Query: 128 ELKDELFCIRFGSVENCKSF 147
E K E +RF + E +SF
Sbjct: 2843 EAKVEQLAVRFKTKEMTESF 2862
Score = 123 bits (309), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 95/155 (61%), Gaps = 2/155 (1%)
Query: 7 GDHREEEVPHNEDEDTGAQVAPIVKLEE-VAVTTGEEDEDAILDLKAKLYRFDKDGNQWK 65
G E +V E+ D G P+V L + V V++GEE+E + +AKLYR+DKD QWK
Sbjct: 2129 GTDEESDVTQEEERD-GQYFEPVVPLPDLVEVSSGEENEQVVFSHRAKLYRYDKDVGQWK 2187
Query: 66 ERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYA 125
ERG G +K+L++ +VR+VMR+ + LK+CANH + P M++Q G ++ VW A D+A
Sbjct: 2188 ERGIGDIKILQNYDNKQVRIVMRRDQVLKLCANHRITPDMTLQTMKGTERVWVWTACDFA 2247
Query: 126 DGELKDELFCIRFGSVENCKSFMEMVHEVAESQKK 160
DGE K E +RF + SF ++ E +Q+K
Sbjct: 2248 DGERKIEHLAVRFKLQDVADSFKKIFDEAKTAQEK 2282
Score = 114 bits (286), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 99/153 (64%), Gaps = 2/153 (1%)
Query: 2 ASTTEGDHREEEVPHNEDEDTGAQVAPIVKL-EEVAVTTGEEDEDAILDLKAKLYRFDKD 60
A+T+ ++++ ED D P+V++ E+V + TGEEDE + + KL+RFD +
Sbjct: 1827 ANTSSDLEKDDDAYKTEDSDD-IHFEPVVQMPEKVELVTGEEDEKVLYSQRVKLFRFDAE 1885
Query: 61 GNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWH 120
+QWKERG G +K+LK++V GK+R++MR+ + LK+CANH + M+++ +G+D++ +W
Sbjct: 1886 ISQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITTTMNLKPLSGSDRAWMWL 1945
Query: 121 AADYADGELKDELFCIRFGSVENCKSFMEMVHE 153
A+D++DG+ K E +F + E + F + E
Sbjct: 1946 ASDFSDGDAKLEQLAAKFKTPELAEEFKQKFEE 1978
>sp|P34022|RANG_MOUSE Ran-specific GTPase-activating protein OS=Mus musculus GN=Ranbp1
PE=1 SV=2
Length = 203
Score = 137 bits (345), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 78/163 (47%), Positives = 104/163 (63%), Gaps = 8/163 (4%)
Query: 25 QVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRF--DKDGNQWKERGAGTVKLLKHKVTGK 82
Q PIV L E + T EEDE+ + ++AKL+RF + D +WKERG G VKLLKHK G
Sbjct: 26 QFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKEKGT 85
Query: 83 VRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA-ADYADGELKDELFCIRFGSV 141
+RL+MR+ KTLKICANH + PMM ++ +AG+D++ VW+ AD+AD K EL IRF +
Sbjct: 86 IRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADFADECPKPELLAIRFLNA 145
Query: 142 ENCKSFM----EMVHEVAESQKKKE-ENKDASATAGLLEKLSV 179
EN + F E E+ E +KK +N +A A LE LSV
Sbjct: 146 ENAQKFKTKFEECRKEIEEREKKGPGKNDNAEKVAEKLEALSV 188
>sp|P41920|YRB1_YEAST Ran-specific GTPase-activating protein 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YRB1 PE=1
SV=1
Length = 201
Score = 135 bits (339), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/134 (49%), Positives = 90/134 (67%), Gaps = 1/134 (0%)
Query: 28 PIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVM 87
P+V LE+V V T EEDE+ + ++AKL+RFD D +WKERG G K LK+K T KVR++M
Sbjct: 67 PVVHLEKVDVKTMEEDEEVLYKVRAKLFRFDADAKEWKERGTGDCKFLKNKKTNKVRILM 126
Query: 88 RQSKTLKICANHLVLPMMSVQEHAGNDKSCVWH-AADYADGELKDELFCIRFGSVENCKS 146
R+ KTLKICANH++ P +++ + G+D+S V+ AD A+GE + F IRFGS EN
Sbjct: 127 RRDKTLKICANHIIAPEYTLKPNVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKENADK 186
Query: 147 FMEMVHEVAESQKK 160
F E + E KK
Sbjct: 187 FKEEFEKAQEINKK 200
>sp|Q3T0M7|RANG_BOVIN Ran-specific GTPase-activating protein OS=Bos taurus GN=RANBP1 PE=2
SV=1
Length = 206
Score = 134 bits (337), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 87/126 (69%), Gaps = 3/126 (2%)
Query: 25 QVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRF--DKDGNQWKERGAGTVKLLKHKVTGK 82
Q PIV L E + T EEDE+ + ++AKL+RF + D +WKERG G VKLLKHK G
Sbjct: 26 QFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKEKGT 85
Query: 83 VRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA-ADYADGELKDELFCIRFGSV 141
+RL+MR+ KTLKICANH + PMM ++ +AG+D++ VW+ AD+AD K EL IRF +
Sbjct: 86 IRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADFADECPKQELLAIRFLNA 145
Query: 142 ENCKSF 147
EN + F
Sbjct: 146 ENAQKF 151
>sp|Q09717|RANG_SCHPO Ran-specific GTPase-activating protein 1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=sbp1 PE=1 SV=1
Length = 215
Score = 131 bits (329), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 68/134 (50%), Positives = 87/134 (64%), Gaps = 1/134 (0%)
Query: 28 PIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVM 87
PIVKL V T EE+E ++AKL+RFDK ++WKERG G +LLKHK TGK RLVM
Sbjct: 77 PIVKLSAVETKTNEEEETVEFKMRAKLFRFDKAASEWKERGTGDARLLKHKETGKTRLVM 136
Query: 88 RQSKTLKICANHLVLPMMSVQEHAGNDKSCVWH-AADYADGELKDELFCIRFGSVENCKS 146
R+ KTLK+CANHL++P M + + G+D+S VW AAD ++GE E F IRF + EN
Sbjct: 137 RRDKTLKVCANHLLMPEMKLTPNVGSDRSWVWTVAADVSEGEPTAETFAIRFANSENANL 196
Query: 147 FMEMVHEVAESQKK 160
F E + E K
Sbjct: 197 FKENFEKYQEENAK 210
>sp|P49792|RBP2_HUMAN E3 SUMO-protein ligase RanBP2 OS=Homo sapiens GN=RANBP2 PE=1 SV=2
Length = 3224
Score = 129 bits (325), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/121 (50%), Positives = 83/121 (68%), Gaps = 1/121 (0%)
Query: 28 PIVKL-EEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLV 86
P+V L +++ V TGEEDE+ +AKL+RFD + +WKERG G VK+L+HK +GK+RL+
Sbjct: 1174 PVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIRLL 1233
Query: 87 MRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKS 146
MR+ + LKICANH + P M + +AG+D+S VWHA DYAD K E IRF + E
Sbjct: 1234 MRREQVLKICANHYISPDMKLTPNAGSDRSFVWHALDYADELPKPEQLAIRFKTPEEAAL 1293
Query: 147 F 147
F
Sbjct: 1294 F 1294
Score = 125 bits (315), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 96/156 (61%), Gaps = 8/156 (5%)
Query: 8 DHREEEVPHNEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKER 67
D +EEV HNED PIV L EV V +GEEDE+ + +AKLYR+D+D +QWKER
Sbjct: 2898 DGSDEEVVHNED----IHFEPIVSLPEVEVKSGEEDEEILFKERAKLYRWDRDVSQWKER 2953
Query: 68 GAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADG 127
G G +K+L H + R++MR+ + K+CANH++ M ++ ++ + VW A+DYADG
Sbjct: 2954 GVGDIKILWHTMKNYYRILMRRDQVFKVCANHVITKTMELKPLNVSNNALVWTASDYADG 3013
Query: 128 ELKDELFCIRFGS--VENC--KSFMEMVHEVAESQK 159
E K E +RF + V +C K+F E + + QK
Sbjct: 3014 EAKVEQLAVRFKTKEVADCFKKTFEECQQNLMKLQK 3049
Score = 124 bits (312), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 98/160 (61%), Gaps = 2/160 (1%)
Query: 2 ASTTEGDHREEEVPHNEDEDTGAQVAPIVKLEE-VAVTTGEEDEDAILDLKAKLYRFDKD 60
+ T+ G E +V E+ D G P+V L + V V++GEE+E + +AKLYR+DKD
Sbjct: 2287 SGTSVGTDEESDVTQEEERD-GQYFEPVVPLPDLVEVSSGEENEQVVFSHRAKLYRYDKD 2345
Query: 61 GNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWH 120
QWKERG G +K+L++ +VR+VMR+ + LK+CANH + P M++Q G ++ +W
Sbjct: 2346 VGQWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLCANHRITPDMTLQNMKGTERVWLWT 2405
Query: 121 AADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQKK 160
A D+ADGE K E +RF + SF ++ E +Q+K
Sbjct: 2406 ACDFADGERKVEHLAVRFKLQDVADSFKKIFDEAKTAQEK 2445
Score = 116 bits (291), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 98/152 (64%), Gaps = 1/152 (0%)
Query: 3 STTEGDHREEEVPHNEDEDTGAQVAPIVKL-EEVAVTTGEEDEDAILDLKAKLYRFDKDG 61
+ T GD +++ + ++ P+V++ E+V + TGEEDE + + KL+RFD +
Sbjct: 1990 ANTSGDFEKDDDAYKTEDSDDIHFEPVVQMPEKVELVTGEEDEKVLYSQRVKLFRFDAEV 2049
Query: 62 NQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA 121
+QWKERG G +K+LK++V GK+R++MR+ + LK+CANH + M+++ +G+D++ +W A
Sbjct: 2050 SQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITTTMNLKPLSGSDRAWMWLA 2109
Query: 122 ADYADGELKDELFCIRFGSVENCKSFMEMVHE 153
+D++DG+ K E +F + E + F + E
Sbjct: 2110 SDFSDGDAKLEQLAAKFKTPELAEEFKQKFEE 2141
>sp|P48820|RBP2_BOVIN E3 SUMO-protein ligase RanBP2 (Fragment) OS=Bos taurus GN=RANBP2
PE=2 SV=2
Length = 1085
Score = 127 bits (319), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 97/160 (60%), Gaps = 4/160 (2%)
Query: 8 DHREEEVPHNEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKER 67
D +EEV HNED PIV L EV V +GEEDE+ + +AKLYR+D++ +QWK+R
Sbjct: 759 DGSDEEVVHNED----IHFEPIVSLPEVEVKSGEEDEEILFKERAKLYRWDREASQWKDR 814
Query: 68 GAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADG 127
G G +K+L H V R++MR+ + K+CANH++ M ++ ++ + VW A+DYADG
Sbjct: 815 GVGDIKILWHTVKNYFRILMRRDQVFKVCANHVITKTMELKPLNVSNNALVWTASDYADG 874
Query: 128 ELKDELFCIRFGSVENCKSFMEMVHEVAESQKKKEENKDA 167
E K E +RF + E F + E ++ K ++ +D+
Sbjct: 875 EAKVEQLAVRFKTKEMADCFKKKFEECQQNLLKPQKGQDS 914
Score = 125 bits (313), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/144 (42%), Positives = 91/144 (63%), Gaps = 1/144 (0%)
Query: 18 EDEDTGAQVAPIVKLEE-VAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLK 76
E+E G P+V L + V V++GEE+E + +AKLYR+DKD QWKERG G +K+L+
Sbjct: 167 EEERDGQHFEPVVPLPDLVEVSSGEENEQVVFSHRAKLYRYDKDAGQWKERGIGDIKILQ 226
Query: 77 HKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCI 136
+ +VR+VMR+ + LK+CANH + P M++Q G ++ VW A D+ADGE K E +
Sbjct: 227 NYENKQVRIVMRRDQVLKLCANHRITPDMTLQNMKGTERVWVWTACDFADGERKIEHLAV 286
Query: 137 RFGSVENCKSFMEMVHEVAESQKK 160
RF + SF ++ E +Q+K
Sbjct: 287 RFKLQDVADSFKKIFDEAKVAQEK 310
>sp|Q7Z3J3|RGPD4_HUMAN RanBP2-like and GRIP domain-containing protein 4 OS=Homo sapiens
GN=RGPD4 PE=2 SV=3
Length = 1758
Score = 125 bits (314), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 98/160 (61%), Gaps = 2/160 (1%)
Query: 2 ASTTEGDHREEEVPHNEDEDTGAQVAPIVKLEE-VAVTTGEEDEDAILDLKAKLYRFDKD 60
+ T+ G E +V E+ D G P+V L + V V++GEE+E + +A+LYR+DKD
Sbjct: 1312 SGTSVGTDEESDVTQEEERD-GQYFEPVVPLPDLVEVSSGEENEKVVFSHRAELYRYDKD 1370
Query: 61 GNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWH 120
QWKERG G +K+L++ +VR+VMR+ + LK+CANH + P MS+Q G ++ VW
Sbjct: 1371 VGQWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLCANHTITPDMSLQNMKGTERVWVWT 1430
Query: 121 AADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQKK 160
A D+ADGE K E +RF + SF ++ E +Q+K
Sbjct: 1431 ACDFADGERKVEHLAVRFKLQDVADSFKKIFDEAKTAQEK 1470
Score = 110 bits (276), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 91/146 (62%), Gaps = 1/146 (0%)
Query: 3 STTEGDHREEEVPHNEDEDTGAQVAPIVKL-EEVAVTTGEEDEDAILDLKAKLYRFDKDG 61
+ T GD +++ + ++ P+V++ E+V + GEE E + KL+RFD +
Sbjct: 1015 ANTSGDFEKDDDAYKTEDSDDIHFEPVVQMPEKVELVIGEEGEKVLYSQGVKLFRFDAEV 1074
Query: 62 NQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA 121
QWKERG G +K+LK++V GK R++MR+ + LK+CANH + M+++ +G+D++ +W A
Sbjct: 1075 RQWKERGLGNLKILKNEVNGKPRMLMRREQVLKVCANHWITTTMNLKPLSGSDRAWMWSA 1134
Query: 122 ADYADGELKDELFCIRFGSVENCKSF 147
+D++DG+ K E +F + E + F
Sbjct: 1135 SDFSDGDAKLERLAAKFKTPELAEEF 1160
>sp|P0DJD0|RGPD1_HUMAN RANBP2-like and GRIP domain-containing protein 1 OS=Homo sapiens
GN=RGPD1 PE=2 SV=1
Length = 1748
Score = 125 bits (313), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 98/160 (61%), Gaps = 2/160 (1%)
Query: 2 ASTTEGDHREEEVPHNEDEDTGAQVAPIVKLEE-VAVTTGEEDEDAILDLKAKLYRFDKD 60
+ T+ G E +V E+ D G P+V L + V V++GEE+E + +A+LYR+DKD
Sbjct: 1296 SGTSVGTDEESDVTQEEERD-GQYFEPVVPLPDLVEVSSGEENEQVVFSHRAELYRYDKD 1354
Query: 61 GNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWH 120
QWKERG G +K+L++ +VR+VMR+ + LK+CANH + P MS+Q G ++ VW
Sbjct: 1355 VGQWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLCANHRITPDMSLQNMKGTERVWVWT 1414
Query: 121 AADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQKK 160
A D+ADGE K E +RF + SF ++ E +Q+K
Sbjct: 1415 ACDFADGERKVEHLAVRFKLQDVADSFKKIFDEAKTAQEK 1454
Score = 110 bits (276), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 94/147 (63%), Gaps = 3/147 (2%)
Query: 3 STTEGDH-REEEVPHNEDEDTGAQVAPIVKL-EEVAVTTGEEDEDAILDLKAKLYRFDKD 60
+ T GD ++++ ED D P+V++ E+V + TGEE E + KL+RFD +
Sbjct: 999 ANTSGDFEKDDDACKTEDSD-DIHFEPVVQMPEKVELVTGEEGEKVLYSQGVKLFRFDAE 1057
Query: 61 GNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWH 120
+QWKERG G +K+LK++V GK R++MR+ + LK+CANH + M+++ +G+D++ +W
Sbjct: 1058 ISQWKERGLGNLKILKNEVNGKPRMLMRRDQVLKVCANHWITTTMNLKPLSGSDRAWMWL 1117
Query: 121 AADYADGELKDELFCIRFGSVENCKSF 147
A+D++DG+ K E +F + E + F
Sbjct: 1118 ASDFSDGDAKLERLAAQFKTPELAEEF 1144
>sp|O14715|RGPD8_HUMAN RANBP2-like and GRIP domain-containing protein 8 OS=Homo sapiens
GN=RGPD8 PE=1 SV=2
Length = 1765
Score = 125 bits (313), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 94/151 (62%), Gaps = 1/151 (0%)
Query: 11 EEEVPHNEDEDTGAQVAPIVKLEE-VAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGA 69
EE V E+E G P+V L + V V++GEE+E + +A++YR+DKD QWKERG
Sbjct: 1319 EESVVTQEEERDGQYFEPVVPLPDLVEVSSGEENEQVVFSHRAEIYRYDKDVGQWKERGI 1378
Query: 70 GTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGEL 129
G +K+L++ +VR+VMR+ + LK+CANH + P MS+Q G ++ VW A D+ADGE
Sbjct: 1379 GDIKILQNYDNKQVRIVMRRDQVLKLCANHRITPDMSLQNMKGTERVWVWTACDFADGER 1438
Query: 130 KDELFCIRFGSVENCKSFMEMVHEVAESQKK 160
K E +RF + SF ++ E +Q+K
Sbjct: 1439 KVEHLAVRFKLQDVADSFKKIFDEAKTAQEK 1469
Score = 114 bits (285), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 93/146 (63%), Gaps = 1/146 (0%)
Query: 3 STTEGDHREEEVPHNEDEDTGAQVAPIVKL-EEVAVTTGEEDEDAILDLKAKLYRFDKDG 61
+ T GD +++ + ++ P+V++ E+V + TGEE E + KL+RFD +
Sbjct: 1014 ANTSGDFEKDDDAYKTEDSDDIHFEPVVQMPEKVELVTGEEGEKVLYSQGVKLFRFDAEV 1073
Query: 62 NQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA 121
QWKERG G +K+LK++V GK+R++MR+ + LK+CANH + M+++ +G+D++ +W A
Sbjct: 1074 RQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITTTMNLKPLSGSDRAWMWSA 1133
Query: 122 ADYADGELKDELFCIRFGSVENCKSF 147
+D++DG+ K E +F + E + F
Sbjct: 1134 SDFSDGDAKLERLAAKFKTPELAEEF 1159
>sp|Q99666|RGPD5_HUMAN RANBP2-like and GRIP domain-containing protein 5/6 OS=Homo sapiens
GN=RGPD5 PE=1 SV=3
Length = 1765
Score = 124 bits (312), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 94/151 (62%), Gaps = 1/151 (0%)
Query: 11 EEEVPHNEDEDTGAQVAPIVKLEE-VAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGA 69
EE V E+E G P+V L + V V++GEE+E + +A++YR+DKD QWKERG
Sbjct: 1319 EESVVTQEEERDGQYFEPVVPLPDLVEVSSGEENEQVVFSHRAEIYRYDKDVGQWKERGI 1378
Query: 70 GTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGEL 129
G +K+L++ +VR+VMR+ + LK+CANH + P MS+Q G ++ VW A D+ADGE
Sbjct: 1379 GDIKILQNYDNKQVRIVMRRDQVLKLCANHRITPDMSLQNMKGTERVWVWTACDFADGER 1438
Query: 130 KDELFCIRFGSVENCKSFMEMVHEVAESQKK 160
K E +RF + SF ++ E +Q+K
Sbjct: 1439 KVEHLAVRFKLQDVADSFKKIFDEAKTAQEK 1469
Score = 114 bits (285), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 93/146 (63%), Gaps = 1/146 (0%)
Query: 3 STTEGDHREEEVPHNEDEDTGAQVAPIVKL-EEVAVTTGEEDEDAILDLKAKLYRFDKDG 61
+ T GD +++ + ++ P+V++ E+V + TGEE E + KL+RFD +
Sbjct: 1014 ANTSGDFEKDDDAYKTEDSDDIHFEPVVQMPEKVELVTGEEGEKVLYSQGVKLFRFDAEV 1073
Query: 62 NQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA 121
QWKERG G +K+LK++V GK+R++MR+ + LK+CANH + M+++ +G+D++ +W A
Sbjct: 1074 RQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITTTMNLKPLSGSDRAWMWSA 1133
Query: 122 ADYADGELKDELFCIRFGSVENCKSF 147
+D++DG+ K E +F + E + F
Sbjct: 1134 SDFSDGDAKLERLAAKFKTPELAEEF 1159
>sp|P0DJD1|RGPD2_HUMAN RANBP2-like and GRIP domain-containing protein 2 OS=Homo sapiens
GN=RGPD2 PE=2 SV=1
Length = 1756
Score = 124 bits (310), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 97/160 (60%), Gaps = 2/160 (1%)
Query: 2 ASTTEGDHREEEVPHNEDEDTGAQVAPIVKLEE-VAVTTGEEDEDAILDLKAKLYRFDKD 60
+ T+ G E +V E+ D G P+V L + V V++GEE+E + A+LYR+DKD
Sbjct: 1304 SGTSVGTDEESDVTQEEERD-GQYFEPVVPLPDLVEVSSGEENEQVVFSHMAELYRYDKD 1362
Query: 61 GNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWH 120
QWKERG G +K+L++ +VR+VMR+ + LK+CANH + P MS+Q G ++ VW
Sbjct: 1363 VGQWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLCANHRITPDMSLQNMKGTERVWVWT 1422
Query: 121 AADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQKK 160
A D+ADGE K E +RF + SF ++ E +Q+K
Sbjct: 1423 ACDFADGERKVEHLAVRFKLQDVADSFKKIFDEAKTAQEK 1462
Score = 110 bits (276), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 94/147 (63%), Gaps = 3/147 (2%)
Query: 3 STTEGDH-REEEVPHNEDEDTGAQVAPIVKL-EEVAVTTGEEDEDAILDLKAKLYRFDKD 60
+ T GD ++++ ED D P+V++ E+V + TGEE E + KL+RFD +
Sbjct: 1007 ANTSGDFEKDDDACKTEDSDD-IHFEPVVQMPEKVELVTGEEGEKVLYSQGVKLFRFDAE 1065
Query: 61 GNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWH 120
+QWKERG G +K+LK++V GK R++MR+ + LK+CANH + M+++ +G+D++ +W
Sbjct: 1066 ISQWKERGLGNLKILKNEVNGKPRMLMRRDQVLKVCANHWITTTMNLKPLSGSDRAWMWL 1125
Query: 121 AADYADGELKDELFCIRFGSVENCKSF 147
A+D++DG+ K E +F + E + F
Sbjct: 1126 ASDFSDGDAKLERLAAQFKTPELAEEF 1152
>sp|A6NKT7|RGPD3_HUMAN RanBP2-like and GRIP domain-containing protein 3 OS=Homo sapiens
GN=RGPD3 PE=2 SV=2
Length = 1758
Score = 122 bits (305), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 96/160 (60%), Gaps = 2/160 (1%)
Query: 2 ASTTEGDHREEEVPHNEDEDTGAQVAPIVKLEE-VAVTTGEEDEDAILDLKAKLYRFDKD 60
+ T+ G E +V E+ D G P+V L + V V++GEE+E + +A+ YR+DKD
Sbjct: 1312 SGTSVGTDEESDVTQEEERD-GQYFEPVVPLPDLVEVSSGEENEQVVFSHRAEFYRYDKD 1370
Query: 61 GNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWH 120
QWKERG G +K+L++ VR++MR+ + LK+CANH + P MS+Q G ++ VW
Sbjct: 1371 VGQWKERGIGDIKILQNYDNKHVRILMRRDQVLKLCANHRITPDMSLQNMKGTERVWVWT 1430
Query: 121 AADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQKK 160
A D+ADGE K E +RF + SF ++ E +Q+K
Sbjct: 1431 ACDFADGERKVEHLAVRFKLQDVADSFKKIFDEAKTAQEK 1470
Score = 113 bits (283), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 94/146 (64%), Gaps = 1/146 (0%)
Query: 3 STTEGDHREEEVPHNEDEDTGAQVAPIVKL-EEVAVTTGEEDEDAILDLKAKLYRFDKDG 61
+ T GD +++ + ++ P+V++ E+V + TGEE E + KL+RFD +
Sbjct: 1015 ANTSGDFEKDDDAYKTEDSDDIHFEPVVQMPEKVELVTGEEGEKVLYSQGVKLFRFDAEV 1074
Query: 62 NQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA 121
+QWKERG G +K+LK++V GKVR++M++ + LK+CANH + M+++ +G+D++ +W A
Sbjct: 1075 SQWKERGLGNLKILKNEVNGKVRMLMQREQVLKVCANHWITTTMNLKPLSGSDRAWMWSA 1134
Query: 122 ADYADGELKDELFCIRFGSVENCKSF 147
+D++DG+ K E +F + E + F
Sbjct: 1135 SDFSDGDAKLERLAAKFKTPELAEEF 1160
>sp|Q54KD9|RANG_DICDI Ran-specific GTPase-activating protein homolog OS=Dictyostelium
discoideum GN=ranbp1 PE=1 SV=1
Length = 194
Score = 117 bits (292), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 89/144 (61%), Gaps = 11/144 (7%)
Query: 15 PHNEDEDTGAQVAPIVKLEE------VAVTTGEEDEDAILDLKAKLYRFDKDGN-QWKER 67
P E ++ A V P V+ E V V T EE+ED + +++AKLYRFD D + QWKER
Sbjct: 32 PAAEIKEYAADVEPNVEYEATLKRDVVEVKTNEENEDTLFEIRAKLYRFDTDPSPQWKER 91
Query: 68 GAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAA-DYAD 126
G G V+ L+ K + ++R+VMR+ KTLK+C NH + P +S+ E G+DKS VW D++D
Sbjct: 92 GTGNVRFLEDKDSKRIRVVMRRDKTLKVCLNHHISPALSLGEMTGSDKSWVWKCPKDFSD 151
Query: 127 GELK---DELFCIRFGSVENCKSF 147
E +ELF IRF + EN F
Sbjct: 152 EEKPEGVEELFAIRFATPENAGLF 175
>sp|Q9CT10|RANB3_MOUSE Ran-binding protein 3 OS=Mus musculus GN=Ranbp3 PE=1 SV=2
Length = 491
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 70/142 (49%), Gaps = 8/142 (5%)
Query: 32 LEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTG----KVRLVM 87
LE+V V TGEE E +L ++ KL+ FDK W ERG G ++L T + RLVM
Sbjct: 310 LEKVEVITGEEAESNVLQIQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVM 369
Query: 88 RQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSF 147
R +L++ N + M Q ++KS A D D +K +F I S + + +
Sbjct: 370 RTQGSLRLILNTKLWAQM--QMDKASEKSIRITATDAEDQGVK--VFLISASSKDTGQLY 425
Query: 148 MEMVHEVAESQKKKEENKDASA 169
+ H + + + E+ ++A A
Sbjct: 426 AALHHRILALRSRAEQEQEAKA 447
>sp|Q9H6Z4|RANB3_HUMAN Ran-binding protein 3 OS=Homo sapiens GN=RANBP3 PE=1 SV=1
Length = 567
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 70/140 (50%), Gaps = 8/140 (5%)
Query: 32 LEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTG----KVRLVM 87
LE+V V TGEE E +L ++ KL+ FDK W ERG G ++L T + RLVM
Sbjct: 386 LEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVM 445
Query: 88 RQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSF 147
R +L++ N + M + + ++KS A D D +K +F I S + + +
Sbjct: 446 RTQGSLRLILNTKLWAQMQIDK--ASEKSIRITAMDTEDQGVK--VFLISASSKDTGQLY 501
Query: 148 MEMVHEVAESQKKKEENKDA 167
+ H + + + E+ ++A
Sbjct: 502 AALHHRILALRSRVEQEQEA 521
>sp|Q5R4Y2|RANB3_PONAB Ran-binding protein 3 OS=Pongo abelii GN=RANBP3 PE=2 SV=1
Length = 494
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 70/140 (50%), Gaps = 8/140 (5%)
Query: 32 LEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTG----KVRLVM 87
LE+V V TGEE E +L ++ KL+ FDK W ERG G ++L T + RLVM
Sbjct: 313 LEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVM 372
Query: 88 RQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSF 147
R +L++ N + M + + ++KS A D D +K +F I S + + +
Sbjct: 373 RTQGSLRLILNTKLWAQMQIDK--ASEKSIRITAMDTEDQVVK--VFLISASSKDTGQLY 428
Query: 148 MEMVHEVAESQKKKEENKDA 167
+ H + + + E+ ++A
Sbjct: 429 AALHHRILALRSRVEQEQEA 448
>sp|Q4R4T9|RANB3_MACFA Ran-binding protein 3 OS=Macaca fascicularis GN=RANBP3 PE=2 SV=1
Length = 499
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 70/140 (50%), Gaps = 8/140 (5%)
Query: 32 LEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTG----KVRLVM 87
LE+V V TGEE E +L ++ KL+ FDK W ERG G ++L T + RLVM
Sbjct: 318 LEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVM 377
Query: 88 RQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSF 147
R +L++ N + M + + ++KS A D D +K +F I S + + +
Sbjct: 378 RTQGSLRLILNTKLWAQMQIDK--ASEKSIRITAMDTEDQGVK--VFLISASSKDTGQLY 433
Query: 148 MEMVHEVAESQKKKEENKDA 167
+ H + + + E+ ++A
Sbjct: 434 AALHHRILALRSRVEQEQEA 453
>sp|Q86VV4|RNB3L_HUMAN Ran-binding protein 3-like OS=Homo sapiens GN=RANBP3L PE=2 SV=2
Length = 465
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 77/160 (48%), Gaps = 13/160 (8%)
Query: 32 LEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTG----KVRLVM 87
LE++ V TGEE E +L + KL+ F+K W ERG GT++L T + RL+M
Sbjct: 284 LEKIDVITGEETEHNVLKINCKLFIFNKTTQSWIERGRGTLRLNDTASTDCGTLQSRLIM 343
Query: 88 RQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSF 147
R +L++ N + M +Q N K+ A D D +K +F I+ + + +
Sbjct: 344 RNQGSLRLILNSKLWAQMKIQR--ANHKNVRITATDLEDYSIK--IFLIQASAQDTAYLY 399
Query: 148 MEMVHEVAESQ---KKKEENK--DASATAGLLEKLSVEEN 182
+ H + Q K+++ N+ S TA L S +EN
Sbjct: 400 AAIHHRLVALQSFNKQRDVNQAESLSETAQQLNCESCDEN 439
>sp|P40517|YRB2_YEAST Ran-specific GTPase-activating protein 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YRB2 PE=1
SV=1
Length = 327
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 9 HREEEVPHNEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERG 68
H E N EDT + P+ KL++ V +GEE E+ I + AKLY+ WKERG
Sbjct: 178 HSGSEQLANASEDTKDKPKPL-KLQKQEVKSGEESEECIYQVNAKLYQLSNIKEGWKERG 236
Query: 69 AGTVKLLKHK-VTGKVRLVMRQSKTLKICANHLVLPMMSVQ 108
G +K+ K K K R+VMR LK+ N ++ +VQ
Sbjct: 237 VGIIKINKSKDDVEKTRIVMRSRGILKVILNIQLVKGFTVQ 277
>sp|P32499|NUP2_YEAST Nucleoporin NUP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NUP2 PE=1 SV=2
Length = 720
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 71/155 (45%), Gaps = 6/155 (3%)
Query: 4 TTEGDHREE---EVPHNEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKD 60
TT D +EE E NE +D A + + + + GEEDE A+ KAKL F+ +
Sbjct: 563 TTTNDSKEESTTEATGNESQDATKVDATPEESKPINLQNGEEDEVALFSQKAKLMTFNAE 622
Query: 61 GNQWKERGAGTVKLLKHK-VTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVW 119
+ RG G +KLLK K KVRL+ R + N V+ + A + + +
Sbjct: 623 TKSYDSRGVGEMKLLKKKDDPSKVRLLCRSDGMGNVLLNATVVDSFKYEPLAPGNDNLIK 682
Query: 120 HAADYADGELKDELFCIRFGSVENCKSFMEMVHEV 154
ADG+L + ++F E +SF + + +
Sbjct: 683 APTVAADGKL--VTYIVKFKQKEEGRSFTKAIEDA 715
>sp|Q6PDH4|RNB3L_MOUSE Ran-binding protein 3-like OS=Mus musculus GN=Ranbp3l PE=2 SV=1
Length = 491
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 8/110 (7%)
Query: 32 LEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLL----KHKVTGKVRLVM 87
LE++ V TGEE E +L + K++ F+K W ERG G ++L + T + RL+M
Sbjct: 309 LEKIDVITGEETEHNVLKINCKIFVFNKATESWSERGQGILRLNDTAGRECGTLQSRLIM 368
Query: 88 RQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIR 137
R +L++ N + M +Q + K+ A D D +K +F I+
Sbjct: 369 RNQGSLRLVLNSRLWAQMKIQR--ASQKNLRITATDLEDDGIK--IFLIQ 414
>sp|Q9USL4|NUP61_SCHPO Nucleoporin nup61 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=nup61 PE=1 SV=2
Length = 549
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%)
Query: 40 GEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICAN 98
GEE+ED++ + +AK+YRFD + + G G +K+ + TG R++ R + K+ N
Sbjct: 432 GEENEDSVFETRAKIYRFDATSKSYSDIGIGPLKINVDRDTGSARILARVEGSGKLLLN 490
>sp|Q09146|HBA1_SCHPO Brefeldin A resistance protein OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=hba1 PE=1 SV=1
Length = 399
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 31 KLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVK--LLKHKVTGKVRLVMR 88
+L + + TGEE+E++I ++A+LY + WKERG G +K + K + +G RL+MR
Sbjct: 262 QLSDSEIITGEEEEESIFSVRARLYVVADEKKTWKERGQGILKVNVPKQRGSGSGRLLMR 321
Query: 89 QSKTLKICANHLVLPMMS 106
++ N + MS
Sbjct: 322 NDAVHRVIMNVPLFQGMS 339
>sp|Q8SSI6|YRB1_ENCCU Ran-specific GTPase-activating protein 1 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=YRB1 PE=1 SV=1
Length = 219
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Query: 42 EDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLV 101
+ ++ + + KLY F ++ +ER GT+ + H + ++ M + + ++ NH +
Sbjct: 88 QSDEILFKARCKLYYFSEETKALEERAEGTMIIEMHSKSNLAKITMFRDQIGRLGCNHFI 147
Query: 102 LPMMSVQEHAGNDKSCVWHAA-DYADGEL---KDELFCIRFGSVENCKSFME 149
P Q H +W + D + + K +LF ++F S E+ K F E
Sbjct: 148 NPRFKAQPHGKVSNGWMWMSTEDTVETDALRKKIQLFVVKFYSEEDFKRFGE 199
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.304 0.123 0.334
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,286,780
Number of Sequences: 539616
Number of extensions: 4022229
Number of successful extensions: 83322
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1590
Number of HSP's successfully gapped in prelim test: 1331
Number of HSP's that attempted gapping in prelim test: 39878
Number of HSP's gapped (non-prelim): 24782
length of query: 228
length of database: 191,569,459
effective HSP length: 113
effective length of query: 115
effective length of database: 130,592,851
effective search space: 15018177865
effective search space used: 15018177865
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 59 (27.3 bits)