Query 027070
Match_columns 228
No_of_seqs 173 out of 628
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 06:58:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027070.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027070hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1k5d_B RAN-specific GTPase-act 100.0 5.3E-55 1.8E-59 376.5 17.9 186 1-186 1-196 (201)
2 4hat_B RAN-specific GTPase-act 100.0 7.6E-51 2.6E-55 333.1 17.0 138 23-160 1-139 (140)
3 3m1i_B RAN-specific GTPase-act 100.0 1.9E-50 6.6E-55 345.6 17.5 147 14-160 43-190 (191)
4 1rrp_B Nuclear pore complex pr 100.0 2.9E-48 1E-52 314.5 15.1 132 25-156 1-133 (134)
5 1xke_A RAN-binding protein 2; 100.0 5.8E-44 2E-48 288.2 17.6 123 38-160 1-123 (130)
6 3n7c_A ABR034WP; nuclear pore 100.0 1E-40 3.5E-45 269.9 14.8 122 35-159 1-123 (130)
7 2y8g_A Ranbp3-B, RAN-binding p 100.0 3.6E-40 1.2E-44 268.9 13.0 123 32-158 2-128 (138)
8 2crf_A RAN binding protein 3; 100.0 1.3E-39 4.3E-44 269.0 16.0 128 28-159 10-141 (150)
9 2ec1_A Nucleoporin 50 kDa; ran 100.0 4.1E-38 1.4E-42 252.9 13.2 116 36-156 4-124 (125)
10 1qc6_A EVH1 domain from ENA/VA 99.7 3.3E-17 1.1E-21 131.8 14.2 108 43-160 2-114 (130)
11 1ddw_A GLGF-domain protein hom 99.5 4.4E-13 1.5E-17 106.8 15.5 107 43-159 2-111 (120)
12 1i2h_A PSD-ZIP45(homer-1C/VESL 99.4 2.7E-12 9.3E-17 107.7 14.5 107 43-159 7-116 (168)
13 1evh_A WH1 domain, protein (ME 99.3 5.1E-11 1.7E-15 93.6 14.4 106 43-158 2-111 (112)
14 1egx_A VAsp, vasodilator-stimu 99.3 5.2E-11 1.8E-15 94.0 13.6 106 44-159 3-114 (115)
15 1xod_A Spred1; sprouty, EVH1, 99.1 6.3E-10 2.2E-14 88.2 12.1 107 43-159 2-116 (118)
16 2jp2_A Spred-2, sprouty-relate 99.1 1.6E-09 5.4E-14 87.0 13.2 108 42-159 10-125 (126)
17 3syx_A Sprouty-related, EVH1 d 98.8 1.4E-07 4.9E-12 76.1 14.1 104 46-159 12-123 (130)
18 1mke_A WIP - N-WAsp, fusion pr 97.5 0.0023 7.8E-08 52.7 13.0 102 45-159 41-144 (152)
19 2ifs_A N-WAsp, wiskott-aldrich 97.4 0.002 6.7E-08 53.9 12.3 101 46-159 59-161 (169)
20 2lyd_A Decapping protein 1; DC 95.6 0.59 2E-05 37.3 14.6 101 45-157 30-133 (134)
21 1tqz_A Necap1; endocytosis, st 95.3 0.24 8.3E-06 39.9 11.1 113 42-159 6-131 (133)
22 2qkl_A DCP1 protein, SPBC3B9.2 93.9 1.3 4.6E-05 34.9 12.4 98 45-155 25-125 (127)
23 2oqb_A Histone-arginine methyl 92.7 3 0.0001 32.8 13.1 76 70-156 32-107 (117)
24 3so6_A LDL receptor adaptor pr 47.5 86 0.0029 23.4 9.4 77 72-154 46-122 (137)
25 1q67_A Decapping protein invol 31.2 2.5E+02 0.0087 24.1 10.8 27 131-157 198-224 (231)
26 1a7g_E E2 DBD, regulatory prot 28.6 32 0.0011 25.1 2.3 33 116-151 35-67 (82)
27 2q79_A Regulatory protein E2; 28.3 26 0.00087 26.3 1.8 33 116-151 34-66 (93)
28 1pfj_A TFIIH basal transcripti 28.1 2E+02 0.0068 21.9 9.1 81 63-158 16-103 (108)
29 2lg1_A A-kinase anchor protein 25.0 2.7E+02 0.0091 22.3 9.7 30 131-160 147-176 (185)
30 1r8h_A Regulatory protein E2; 24.9 33 0.0011 25.3 1.8 33 116-151 37-69 (87)
31 3ka5_A Ribosome-associated pro 23.2 98 0.0033 21.6 3.9 23 71-93 28-51 (65)
32 3lyv_A Ribosome-associated fac 22.1 98 0.0033 21.6 3.8 20 71-90 29-48 (66)
33 3k2t_A LMO2511 protein; lister 20.6 1.1E+02 0.0038 20.6 3.7 18 72-89 29-46 (57)
No 1
>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal transduction, nuclear transport, GTP hydrolysis, ground state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3 PDB: 1k5g_B*
Probab=100.00 E-value=5.3e-55 Score=376.52 Aligned_cols=186 Identities=43% Similarity=0.725 Sum_probs=136.4
Q ss_pred CCCCCCCCCC-ccCCCCCCCCCCCCccceeeeccccccccCcccceeEEEEeeeEEEE--ccCCCCcceeceeEEEEEee
Q 027070 1 MASTTEGDHR-EEEVPHNEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRF--DKDGNQWKERGAGTVKLLKH 77 (228)
Q Consensus 1 ~~~~~~~~~~-~~~~~~~eee~~~~~f~Piv~L~~vev~TGEEdEe~lf~~RaKLyrf--dke~~~WkERGvG~LkLlk~ 77 (228)
||++...... +++++++++++++++|+|||+|+.++|.||||||++||++|||||+| +++.++|++||+|+||||+|
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~f~Piv~L~~vev~TGEEdEe~lf~~RaKLf~f~~d~~~~~WKERGvG~lkIlk~ 80 (201)
T 1k5d_B 1 MAAAKDTHEDHDTSTENTDESNHDPQFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKH 80 (201)
T ss_dssp ---------------------CCCCCCCCSCCCCCCCCCCSCSSCCCSEEEEEEEEEECCTTSSCCEEEEEEEEEEEEEC
T ss_pred CCCccccccccccccccccccCCCCccccccccccccccCCCccceEEEEEeeeEEEecccccCCCccccceEEEEEEEc
Confidence 7764333222 45557788999999999999999999999999999999999999999 66678999999999999999
Q ss_pred CCCCeEEEEEEeCCcceEEeeeeecCCceeeecCCCCceEEEEe-eecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHH
Q 027070 78 KVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA-ADYADGELKDELFCIRFGSVENCKSFMEMVHEVAE 156 (228)
Q Consensus 78 ketgk~RIVMR~d~t~KV~lN~~I~~~M~l~~~~gsdKa~vw~a-~D~adge~k~e~~lIRFksaE~A~eF~~~~ee~~e 156 (228)
++++++|||||+|+++||||||+|+|+|+++++.+++++|+|++ .||+|+.+++++|+|||+++++|+.|+.+|++|++
T Consensus 81 k~t~k~RlvMR~d~~~kV~LN~~I~~~m~~~~~~~s~ks~v~~~~~d~ad~~~k~e~~~iRfks~e~A~~f~~~~ee~k~ 160 (201)
T 1k5d_B 81 KEKGAIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFKTKFEECRK 160 (201)
T ss_dssp SSSCCEEEEEEETTTCCEEEEEECCSSCCCCBCSSCSSEEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEEECCcceEEEeeEecCCceeeecCCCCceEEEEeccccCCCCCceEEEEEEECCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999997 89999999999999999999999999999999999
Q ss_pred Hhhhhc------ccchhhHHHHHhhhcccccccccc
Q 027070 157 SQKKKE------ENKDASATAGLLEKLSVEENKTED 186 (228)
Q Consensus 157 ~~~~~~------~~~~~~~~~~~~e~l~~~~~~~~~ 186 (228)
.+.+.. +++.++.+|++|++|||++.++++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (201)
T 1k5d_B 161 EIEEREKKAGSGKNDHAEKVAEKLEALSVKEETKED 196 (201)
T ss_dssp HHHHHCC-----------------------------
T ss_pred HHHhhhccccccccchhHHHHhHHhhccccccccch
Confidence 987542 456789999999999998876543
No 2
>4hat_B RAN-specific GTPase-activating protein 1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_B* 4hav_B* 4haw_B* 4hax_B* 4hay_B* 4haz_B* 4hb0_B* 4hb2_B* 4hb3_B* 4hb4_B* 4gmx_B* 4gpt_B*
Probab=100.00 E-value=7.6e-51 Score=333.11 Aligned_cols=138 Identities=49% Similarity=0.808 Sum_probs=115.7
Q ss_pred CCccceeeeccccccccCcccceeEEEEeeeEEEEccCCCCcceeceeEEEEEeeCCCCeEEEEEEeCCcceEEeeeeec
Q 027070 23 GAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVL 102 (228)
Q Consensus 23 ~~~f~Piv~L~~vev~TGEEdEe~lf~~RaKLyrfdke~~~WkERGvG~LkLlk~ketgk~RIVMR~d~t~KV~lN~~I~ 102 (228)
|+||+|||+|++|+|.||||||++||++|||||+|+++.++|++||+|+||||+|+++|++|||||+|+++||||||+|+
T Consensus 1 ~~~f~pvv~l~~vev~tGEE~E~~lf~~raKLf~f~~~~~~WkerG~G~lkilk~k~~~k~RllmR~d~~~kv~lN~~i~ 80 (140)
T 4hat_B 1 DIHFEPVVHLEKVDVKTMEEDEEVLYKVRAKLFRFDKDAKEWKERGTGDCKFLKNKKTNKVRILMRRDKTLKICANHIIA 80 (140)
T ss_dssp ------------------CTTEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEETTTCCEEEEEECTTTCCEEEEEECC
T ss_pred CCcccceeEcceecccCCCcCeeEEEEEeEEEEEEcCCCCCcccccEEEEEEEEcCCCCeEEEEEEecCcceEEEEeEec
Confidence 58999999999999999999999999999999999987789999999999999999999999999999999999999999
Q ss_pred CCceeeecCCCCceEEEEe-eecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHHHhhh
Q 027070 103 PMMSVQEHAGNDKSCVWHA-ADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQKK 160 (228)
Q Consensus 103 ~~M~l~~~~gsdKa~vw~a-~D~adge~k~e~~lIRFksaE~A~eF~~~~ee~~e~~~~ 160 (228)
|+|+++++.+++++|+|++ .||+||.+++++|+|||+|+++|++|+++|++|++.|++
T Consensus 81 ~~m~~~~~~~s~k~~v~~~~~D~sdg~~~~~~~~iRfk~~e~A~~f~~~~ee~~~~n~~ 139 (140)
T 4hat_B 81 PEYTLKPNVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKENADKFKEEFEKAQEINKK 139 (140)
T ss_dssp TTCCCBCCTTCSSEEEEEEEEECTTSSCEEEEEEEEESSHHHHHHHHHHHHHHHHHHHC
T ss_pred CCeEEeEcCCCCceEEEEccccCCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999995 799999999999999999999999999999999998863
No 3
>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-50 Score=345.57 Aligned_cols=147 Identities=46% Similarity=0.756 Sum_probs=124.8
Q ss_pred CCCCCCCCCCCccceeeeccccccccCcccceeEEEEeeeEEEEccCCCCcceeceeEEEEEeeCCCCeEEEEEEeCCcc
Q 027070 14 VPHNEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTL 93 (228)
Q Consensus 14 ~~~~eee~~~~~f~Piv~L~~vev~TGEEdEe~lf~~RaKLyrfdke~~~WkERGvG~LkLlk~ketgk~RIVMR~d~t~ 93 (228)
.++.+|+++++||+|||+|++|+|.||||||++||++|||||+|+++.++|++||+|+||||+|++++++|||||+|+++
T Consensus 43 ~~~~~ee~~~~~f~Pvv~L~~vev~tGEEdEe~lf~~RaKLf~f~~~~~~WKERGvG~lkilk~ket~k~RllMR~d~~~ 122 (191)
T 3m1i_B 43 EGDDAPESPDIHFEPVVHLEKVDVKTMEEDEEVLYKVRAKLFRFDADAKEWKERGTGDCKFLKNKKTNKVRILMRRDKTL 122 (191)
T ss_dssp ------------------CCCCCCCCSCTTEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEETTTCCEEEEEECTTTC
T ss_pred cccccccCCCCCcccceecccccccCCCcceeeeeEEeeEEEEEecCCCCccceeEEEEEEEEcCCCCeEEEEEEecCcc
Confidence 34456889999999999999999999999999999999999999987789999999999999999999999999999999
Q ss_pred eEEeeeeecCCceeeecCCCCceEEEEe-eecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHHHhhh
Q 027070 94 KICANHLVLPMMSVQEHAGNDKSCVWHA-ADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQKK 160 (228)
Q Consensus 94 KV~lN~~I~~~M~l~~~~gsdKa~vw~a-~D~adge~k~e~~lIRFksaE~A~eF~~~~ee~~e~~~~ 160 (228)
||||||+|+|+|+++++.+++++|+|++ .||++|.+++++|+|||+|+++|++|+++|++|++.|++
T Consensus 123 kV~LN~~I~~~m~~~~~~~sdks~v~~~~~D~sdge~k~e~~aIRFk~~E~A~eF~~~~eeaq~~nkk 190 (191)
T 3m1i_B 123 KICANHIIAPEYTLKPNVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKENADKFKEEFEKAQEINKK 190 (191)
T ss_dssp CEEEEEECCTTCCCBCCTTCSSEEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEeeecCCCcEEeECCCCCceEEEEecCcCCCCCcceEEEEEEECCHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999997 699999999999999999999999999999999998863
No 4
>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3
Probab=100.00 E-value=2.9e-48 Score=314.55 Aligned_cols=132 Identities=47% Similarity=0.815 Sum_probs=127.9
Q ss_pred ccceeeecc-ccccccCcccceeEEEEeeeEEEEccCCCCcceeceeEEEEEeeCCCCeEEEEEEeCCcceEEeeeeecC
Q 027070 25 QVAPIVKLE-EVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLP 103 (228)
Q Consensus 25 ~f~Piv~L~-~vev~TGEEdEe~lf~~RaKLyrfdke~~~WkERGvG~LkLlk~ketgk~RIVMR~d~t~KV~lN~~I~~ 103 (228)
||+|||+|+ +|++.||||||++||++|||||+|+++.++|++||+|+||||+|++++++|||||+|++++|||||+|++
T Consensus 1 ~~~pi~~l~~~vev~tGEE~E~~lf~~raKL~~~~~~~~~WkerG~G~lkil~~k~~~k~RlvmR~d~~~kv~lN~~i~~ 80 (134)
T 1rrp_B 1 HFEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIRLLMRREQVLKICANHYISP 80 (134)
T ss_dssp CCCCSSCCCCCCCCCCSCCSEEEEEEEEEEEEEECSSSSCEEEEEEEEEEEEEESSSCCCEEEEECTTTCCEEECCBCCS
T ss_pred CcccceECCceEeecCCCcCeEEEEEEEEEEEEEcccCCCcccCcEEEEEEEEECCCCeEEEEEEEcCCCcEEEEeEecC
Confidence 799999997 7999999999999999999999999888899999999999999999999999999999999999999999
Q ss_pred CceeeecCCCCceEEEEeeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHH
Q 027070 104 MMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAE 156 (228)
Q Consensus 104 ~M~l~~~~gsdKa~vw~a~D~adge~k~e~~lIRFksaE~A~eF~~~~ee~~e 156 (228)
+|+++++.+++++|+|++.||+|+++++++|+|||+++++|++|+++|++|++
T Consensus 81 ~m~~~~~~~s~~~~~~~~~d~~d~~~k~~~~~irfk~~e~A~~f~~~~~e~~~ 133 (134)
T 1rrp_B 81 DMKLTPNAGSDRSFVWHALDYADELPKPEQLAIRFKTPEEAALFKCKFEEAQS 133 (134)
T ss_dssp SCCCBCSTTCTTEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHHHHHTTC
T ss_pred CceEeecCCCCeEEEEEcccccCCCCceEEEEEEECCHHHHHHHHHHHHHHhh
Confidence 99999998899999999999999999999999999999999999999999874
No 5
>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=100.00 E-value=5.8e-44 Score=288.20 Aligned_cols=123 Identities=37% Similarity=0.726 Sum_probs=118.7
Q ss_pred ccCcccceeEEEEeeeEEEEccCCCCcceeceeEEEEEeeCCCCeEEEEEEeCCcceEEeeeeecCCceeeecCCCCceE
Q 027070 38 TTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSC 117 (228)
Q Consensus 38 ~TGEEdEe~lf~~RaKLyrfdke~~~WkERGvG~LkLlk~ketgk~RIVMR~d~t~KV~lN~~I~~~M~l~~~~gsdKa~ 117 (228)
.||||||++||++|||||+|+++.++|++||+|+||||+|++++++|||||+|+++||||||+|+|+|+++++.+++++|
T Consensus 1 gtGEE~E~~l~~~raKL~~~~~~~~~WkERG~G~lkil~~k~~~k~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~s~~~~ 80 (130)
T 1xke_A 1 GSGEEDEKVLYSQRVKLFRFDAEVSQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITTTMNLKPLSGSDRAW 80 (130)
T ss_dssp CCSSSCEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEETTSSCEEEEEEETTTTEEEEEEECCTTSCEEECTTCSSCE
T ss_pred CCCCcceEEEEEEEEEEEEEcCCCCCcccCcEEEEEEEEcCCCCeEEEEEEEcCCCeEEEecEeCCCcEEeecCCCCeEE
Confidence 48999999999999999999987889999999999999999999999999999999999999999999999998999999
Q ss_pred EEEeeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHHHhhh
Q 027070 118 VWHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQKK 160 (228)
Q Consensus 118 vw~a~D~adge~k~e~~lIRFksaE~A~eF~~~~ee~~e~~~~ 160 (228)
+|++.||+|+++++++|+|||+++++|++|+++|++|++.+..
T Consensus 81 ~~~~~d~~d~~~~~~~~~irfks~e~a~~f~~~~ee~k~~~~~ 123 (130)
T 1xke_A 81 MWLASDFSDGDAKLEQLAAKFKTPELAEEFKQKFEECQRLLLD 123 (130)
T ss_dssp EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHHHHHHHTTT
T ss_pred EEEecccCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999998753
No 6
>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain, nucleoporin, structural genomics, PSI-2, protein structure initiative; 2.26A {Ashbya gossypii} PDB: 3oan_A
Probab=100.00 E-value=1e-40 Score=269.88 Aligned_cols=122 Identities=28% Similarity=0.434 Sum_probs=100.9
Q ss_pred cccccCcccceeEEEEeeeEEEEccCCCCcceeceeEEEEEeeCC-CCeEEEEEEeCCcceEEeeeeecCCceeeecCCC
Q 027070 35 VAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKV-TGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGN 113 (228)
Q Consensus 35 vev~TGEEdEe~lf~~RaKLyrfdke~~~WkERGvG~LkLlk~ke-tgk~RIVMR~d~t~KV~lN~~I~~~M~l~~~~gs 113 (228)
|+|+||||||++||++|||||+|+++.++|++||+|+||||+|++ ++++|||||+|++++|||||+|+|+|+++++.++
T Consensus 1 iev~tGEE~E~~lf~~raKL~~f~~~~~~WkerG~G~lkil~~k~~~~k~RllmR~d~~~kv~lN~~i~~~m~~~~~~~~ 80 (130)
T 3n7c_A 1 MSLTNGEENEEVLFCEKAKLLIFDSDTKGYTSRGVGELKLLRKKDDKGKVRVLCRSEGMGHVLLNTSVVKSFKYQPIDAD 80 (130)
T ss_dssp ---------CEEEEEEEEEEEEECC---CEEEEEEEEEEEEEETTEEEEEEEEEEC-CCCCEEEEEECCTTBCCEESCTT
T ss_pred CcccCCCcCeeEEEEEEEEEEEEeCCCCCchhcceEEEEEEEecCCCCEEEEEEEecCCceEEeeccccCCcEEeEcCCC
Confidence 579999999999999999999999888899999999999999995 8999999999999999999999999999999888
Q ss_pred CceEEEEeeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHHHhh
Q 027070 114 DKSCVWHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQK 159 (228)
Q Consensus 114 dKa~vw~a~D~adge~k~e~~lIRFksaE~A~eF~~~~ee~~e~~~ 159 (228)
+++|+|.+. ++|| ++++|+|||+|+++|++|+++|+++++-+.
T Consensus 81 ~~~~v~~~~-~~dg--k~~~~~lrfks~e~A~~f~~~iee~~~~~~ 123 (130)
T 3n7c_A 81 NENLIKWPI-ITDG--KLETFIIKVKQKADGRRLVGAVADAQQAME 123 (130)
T ss_dssp CTTEEEEEE-EETT--EEEEEEEECSSHHHHHHHHHHHHHHHHHC-
T ss_pred CccEEEEEe-cCCC--ceEEEEEEECCHHHHHHHHHHHHHHHhhhc
Confidence 888988753 3554 689999999999999999999999998774
No 7
>2y8g_A Ranbp3-B, RAN-binding protein 3; protein transport, CRM1-mediated nuclear export; 1.61A {Homo sapiens} PDB: 2y8f_A
Probab=100.00 E-value=3.6e-40 Score=268.87 Aligned_cols=123 Identities=28% Similarity=0.436 Sum_probs=99.9
Q ss_pred ccccccccCcccceeEEEEeeeEEEEccCCCCcceeceeEEEEEeeCC----CCeEEEEEEeCCcceEEeeeeecCCcee
Q 027070 32 LEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKV----TGKVRLVMRQSKTLKICANHLVLPMMSV 107 (228)
Q Consensus 32 L~~vev~TGEEdEe~lf~~RaKLyrfdke~~~WkERGvG~LkLlk~ke----tgk~RIVMR~d~t~KV~lN~~I~~~M~l 107 (228)
|++|+|.||||+|++||++|||||+|+++.++|++||+|+||||+|+. ++++|||||+|+++||||||+|+|+|++
T Consensus 2 l~~v~v~tGEE~E~~~~~~raKL~~f~~~~~~WkERG~G~lkil~~k~~~~~t~k~RlvmR~d~~~kv~lN~~i~~~m~~ 81 (138)
T 2y8g_A 2 AMKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVAVGRGLLRLNDMASTDDGTLQSRLVMRTQGSLRLILNTKLWAQMQI 81 (138)
T ss_dssp ------------CEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEECTTTCCEEEEEEEEETTTCCEEEEEECCTTCCE
T ss_pred CCcccccCCCcCcEEEEEEEeEEEEEecCCCCchhceEEEEEEEEeccCCCCCccEEEEEEEcCcceEEEeeEecCCcee
Confidence 688999999999999999999999999877899999999999999974 4899999999999999999999999999
Q ss_pred eecCCCCceEEEEeeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHHHh
Q 027070 108 QEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQ 158 (228)
Q Consensus 108 ~~~~gsdKa~vw~a~D~adge~k~e~~lIRFksaE~A~eF~~~~ee~~e~~ 158 (228)
++ +++++|+|+++|++++. +.+|+|||+++++|+.|...+++++...
T Consensus 82 ~~--~~~k~~~~~~~d~~d~~--~~~~lirfk~~e~a~lf~~~~~~i~~lk 128 (138)
T 2y8g_A 82 DK--ASEKSIRITAMDTEDQG--VKVFLISASSKDTGQLYAALHHRILALR 128 (138)
T ss_dssp EE--EETTEEEEECCC--CCC--CCEEEEECCHHHHHHHHHHHHHHHHHHH
T ss_pred ec--CCCCEEEEEEecCCCCc--eEEEEEEECCHHHHHHHHHHHHHHHHhh
Confidence 86 46789999999998765 5699999999999999999999888643
No 8
>2crf_A RAN binding protein 3; RAN_BP1 domain, ranbp3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=100.00 E-value=1.3e-39 Score=269.03 Aligned_cols=128 Identities=30% Similarity=0.455 Sum_probs=115.7
Q ss_pred eeeeccccccccCcccceeEEEEeeeEEEEccCCCCcceeceeEEEEEeeC----CCCeEEEEEEeCCcceEEeeeeecC
Q 027070 28 PIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHK----VTGKVRLVMRQSKTLKICANHLVLP 103 (228)
Q Consensus 28 Piv~L~~vev~TGEEdEe~lf~~RaKLyrfdke~~~WkERGvG~LkLlk~k----etgk~RIVMR~d~t~KV~lN~~I~~ 103 (228)
|++.|++|+|.||||+|++||++|||||+|+++.++|++||+|+||||+|+ .++++|||||+|++++|||||+|+|
T Consensus 10 ~~~~l~~vev~tGEE~E~~l~~~raKL~~fd~~~~~WkERG~G~lkil~~k~~~~~t~k~RlvmR~d~~~kv~lN~~i~~ 89 (150)
T 2crf_A 10 RKCLLEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVMRTQGSLRLILNTKLWA 89 (150)
T ss_dssp CCSCSSCTTTSCCCCCCEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEECSSSCSEEEEEEEEESSSCCEEEEEECCT
T ss_pred cccCcccccccCCCcCeEEEEEEEeEEEEEcCCCCCcccceeEEEEEEeccccCCCCccEEEEEEEcCcceEEeeeeccC
Confidence 456678999999999999999999999999988889999999999999997 3689999999999999999999999
Q ss_pred CceeeecCCCCceEEEEeeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHHHhh
Q 027070 104 MMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQK 159 (228)
Q Consensus 104 ~M~l~~~~gsdKa~vw~a~D~adge~k~e~~lIRFksaE~A~eF~~~~ee~~e~~~ 159 (228)
+|++.+ +++++|+|+++|++++. +++|+|||+++++|+.|...+++++....
T Consensus 90 ~m~~~~--~~~k~~~~~~~d~~d~~--~~~~lirfk~~e~a~lf~~~~e~i~~l~~ 141 (150)
T 2crf_A 90 QMQIDK--ASEKSIHITAMDTEDQG--VKVFLISASSKDTGQLYAALHHRILALRS 141 (150)
T ss_dssp TCCEEC--CSSSEEEEEEEBSSSCC--EEEEEEECCHHHHHHHHHHHHHHHHHHHH
T ss_pred Cceeec--CCCCEEEEEeecCCCCc--eEEEEEEECCHHHHHHHHHHHHHHHHHHh
Confidence 999975 56899999999998764 66999999999999999988888875543
No 9
>2ec1_A Nucleoporin 50 kDa; ranbp domain, nuclear pore-associated protein 60 kDa-like, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=4.1e-38 Score=252.88 Aligned_cols=116 Identities=23% Similarity=0.340 Sum_probs=102.0
Q ss_pred ccccCcccceeEEEEeeeEEEEccCCCCcceeceeEEEEEeeCCCCeEEEEEEeCCc-ceEEeeeeecCCceeeecCCCC
Q 027070 36 AVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKT-LKICANHLVLPMMSVQEHAGND 114 (228)
Q Consensus 36 ev~TGEEdEe~lf~~RaKLyrfdke~~~WkERGvG~LkLlk~ketgk~RIVMR~d~t-~KV~lN~~I~~~M~l~~~~gsd 114 (228)
...||||+|++||++|||||+|+. ++|++||+|+||||+|+ ++++|||||+|++ +||||||+|+++|+++++ +++
T Consensus 4 ~~~tgEE~E~~lf~~raKLf~~~~--~~WkERGvG~lki~~~k-~~k~RllmR~d~~~~kv~lN~~i~~~m~~~~~-g~~ 79 (125)
T 2ec1_A 4 GSSGEVKEEDAFYSKKCKLFYKKD--NEFKEKGIGTLHLKPTA-NQKTQLLVRADTNLGNILLNVLIPPNMPCTRT-GKN 79 (125)
T ss_dssp ----CCCCCSCSEEEEEEEEEECS--SSEEEEEEEEEEEEECS-SSSEEEEEEESSSSCCBSCCEECCSSCCEECC-TTT
T ss_pred CCcCCccCceeEEEEeeEEEEecC--CCcccccEEEEEeeecC-CCcEEEEEEecCCCCEEEEeeEEcCCCeEEec-CCC
Confidence 457999999999999999999965 79999999999999997 7999999999996 799999999999999997 777
Q ss_pred ceEEEEeeec--CCCC--ceeeEEEEEeCCHHHHHHHHHHHHHHHH
Q 027070 115 KSCVWHAADY--ADGE--LKDELFCIRFGSVENCKSFMEMVHEVAE 156 (228)
Q Consensus 115 Ka~vw~a~D~--adge--~k~e~~lIRFksaE~A~eF~~~~ee~~e 156 (228)
+.|+|+ +++ +|+. +++++|+|||+++++|++|+++|+++++
T Consensus 80 ~~~~~~-~~~~~~d~~~~~~~~~~~lrfk~~e~a~~f~~~~~e~k~ 124 (125)
T 2ec1_A 80 NVLIVC-VPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKKD 124 (125)
T ss_dssp EEEEEE-CCSSCSCSSSSSSCEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred cEEEEE-ccCCcccCCCCCceEEEEEEECCHHHHHHHHHHHHHhhc
Confidence 888886 443 4765 5699999999999999999999999985
No 10
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=99.74 E-value=3.3e-17 Score=131.76 Aligned_cols=108 Identities=14% Similarity=0.318 Sum_probs=94.6
Q ss_pred cceeEEEEeeeEEEEccCCCCcceecee-----EEEEEeeCCCCeEEEEEEeCCcceEEeeeeecCCceeeecCCCCceE
Q 027070 43 DEDAILDLKAKLYRFDKDGNQWKERGAG-----TVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSC 117 (228)
Q Consensus 43 dEe~lf~~RaKLyrfdke~~~WkERGvG-----~LkLlk~ketgk~RIVMR~d~t~KV~lN~~I~~~M~l~~~~gsdKa~ 117 (228)
.|.+||++||+||.|++..+.|..+|.| .|+|++|..++.+|||+|+.+..+||+|+.|+++|.+.+ .+++.+
T Consensus 2 ~E~~i~~~~A~V~~~d~~~~~W~~~g~G~~~l~~V~i~~~~~~~~~Riv~~~~~~~~vi~n~~i~~~~~y~~--~~~~Fh 79 (130)
T 1qc6_A 2 SEQSICQARASVMVYDDTSKKWVPIKPGQQGFSRINIYHNTASSTFRVVGVKLQDQQVVINYSIVKGLKYNQ--ATPTFH 79 (130)
T ss_dssp CCEEEEEEEEEEEEEETTTTEEEECC-----CEEEEEEEETTTTEEEEEEECTTTCCEEEEEECCTTCEEEE--EETTEE
T ss_pred CceeEEEEEEEEEEECCCCCceeECCCCceeeeEEEEEecCCCcEEEEEEEeCCCCeEEEeeEEeCCcEEec--cCCeeE
Confidence 3789999999999999888899999998 899999998999999999988999999999999999987 456788
Q ss_pred EEEeeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHHHhhh
Q 027070 118 VWHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQKK 160 (228)
Q Consensus 118 vw~a~D~adge~k~e~~lIRFksaE~A~eF~~~~ee~~e~~~~ 160 (228)
.|. ++ ...|.|+|.+.++|+.|...|+++.+.+..
T Consensus 80 ~w~-----~~---~~~~GL~F~se~eA~~F~~~~~~al~~~~~ 114 (130)
T 1qc6_A 80 QWR-----DA---RQVYGLNFASKEEATTFSNAMLFALNIMNS 114 (130)
T ss_dssp EEE-----CS---SCEEEEEESCHHHHHHHHHHHHHHHHHTC-
T ss_pred EEE-----cC---CEEEEEecCCHHHHHHHHHHHHHHHHHHhc
Confidence 884 22 268999999999999999999999998754
No 11
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Probab=99.52 E-value=4.4e-13 Score=106.82 Aligned_cols=107 Identities=20% Similarity=0.374 Sum_probs=91.3
Q ss_pred cceeEEEEeeeEEEEccCCC-Ccce--eceeEEEEEeeCCCCeEEEEEEeCCcceEEeeeeecCCceeeecCCCCceEEE
Q 027070 43 DEDAILDLKAKLYRFDKDGN-QWKE--RGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVW 119 (228)
Q Consensus 43 dEe~lf~~RaKLyrfdke~~-~WkE--RGvG~LkLlk~ketgk~RIVMR~d~t~KV~lN~~I~~~M~l~~~~gsdKa~vw 119 (228)
.|.+||..||.||.+|+.++ .|.. .|.|.|.|+++...+.+||+.|++ .+|++|+.|+++|.+.+ .++..+.|
T Consensus 2 ~E~~i~~~rA~V~~~D~~tk~~W~p~g~~~~~V~~~~d~~~~~yRIv~~~~--~~vv~n~~i~~~l~y~~--a~p~FhqW 77 (120)
T 1ddw_A 2 GEQPIFSTRAHVFQIDPNTKKNWVPTSKHAVTVSYFYDSTRNVYRIISLDG--SKAIINSTITPNMTFTK--TSQKFGQW 77 (120)
T ss_dssp CEEEEEEEEEEEEEECTTTSCSEEESCSSCEEEEEEEETTTTEEEEEEEET--TEEEEEEECCTTCCCEE--CSSSEEEE
T ss_pred CceEEEEEEEEEEEEcCCCCCceEeCCCCceEEEEEEcCCCCEEEEEEccC--CEEEEeCEecCCcEEee--CCccccEE
Confidence 47899999999999998764 9999 555666688998888999999984 69999999999999987 46778888
Q ss_pred EeeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHHHhh
Q 027070 120 HAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQK 159 (228)
Q Consensus 120 ~a~D~adge~k~e~~lIRFksaE~A~eF~~~~ee~~e~~~ 159 (228)
..-+ -...|-+.|.|.++|+.|...|+++.+.+.
T Consensus 78 ~d~~------~~~~~GLnF~s~~eA~~F~~~~~~~~~~l~ 111 (120)
T 1ddw_A 78 ADSR------ANTVYGLGFSSEHHLSKFAEKFQEFKEAAR 111 (120)
T ss_dssp EETT------TTEEEEEECSSHHHHHHHHHHHHHHHHHHC
T ss_pred EcCC------CcEEEEeccCCHHHHHHHHHHHHHHHHHHH
Confidence 7211 136899999999999999999999999886
No 12
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4
Probab=99.43 E-value=2.7e-12 Score=107.75 Aligned_cols=107 Identities=20% Similarity=0.367 Sum_probs=90.5
Q ss_pred cceeEEEEeeeEEEEccCCC-Cccee--ceeEEEEEeeCCCCeEEEEEEeCCcceEEeeeeecCCceeeecCCCCceEEE
Q 027070 43 DEDAILDLKAKLYRFDKDGN-QWKER--GAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVW 119 (228)
Q Consensus 43 dEe~lf~~RaKLyrfdke~~-~WkER--GvG~LkLlk~ketgk~RIVMR~d~t~KV~lN~~I~~~M~l~~~~gsdKa~vw 119 (228)
.|.+||..||.||.+|+..+ .|... |.|.|.|+++...+.+||+.|++ .+|++|+.|+++|.|.+. +...+.|
T Consensus 7 ~E~~I~s~rA~Vm~~D~~tk~~WvP~g~~~~~V~i~~d~~rnsyRIvg~~d--~kvvinc~I~~~l~Y~ka--sp~FHqW 82 (168)
T 1i2h_A 7 GEQPIFSTRAHVFQIDPNTKKNWVPTSKHAVTVSYFYDSTRNVYRIISLDG--SKAIINSTITPNMTFTKT--SQKFGQW 82 (168)
T ss_dssp SSCCSEEEEEEEEEECTTSSCCSEESCSSCEEEEEEEETTTTEEEEEEEET--TEEEEEEECCTTCCEEEE--ETTEEEE
T ss_pred cceeEEEEEEEEEEECCCCCCceeecCCCCeEEEEEEcCCCCEEEEEEccC--CEEEEecEecCCcEEeeC--Cccccee
Confidence 57899999999999998764 89994 45555588888888999999984 699999999999999873 5678888
Q ss_pred EeeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHHHhh
Q 027070 120 HAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQK 159 (228)
Q Consensus 120 ~a~D~adge~k~e~~lIRFksaE~A~eF~~~~ee~~e~~~ 159 (228)
..-+ -...|-|.|.+.+.|+.|...|+++++.+.
T Consensus 83 ~d~~------~~~v~GLnF~Se~eA~~F~~~~~~ale~l~ 116 (168)
T 1i2h_A 83 ADSR------ANTVYGLGFSSEHHLSKFAEKFQEFKEAAR 116 (168)
T ss_dssp EETT------TTEEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred ecCC------CcEEEEeccCCHHHHHHHHHHHHHHHHHHH
Confidence 7321 136899999999999999999999999886
No 13
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=99.31 E-value=5.1e-11 Score=93.61 Aligned_cols=106 Identities=20% Similarity=0.405 Sum_probs=90.4
Q ss_pred cceeEEEEeeeEEEEccCCCCcceec--eeE--EEEEeeCCCCeEEEEEEeCCcceEEeeeeecCCceeeecCCCCceEE
Q 027070 43 DEDAILDLKAKLYRFDKDGNQWKERG--AGT--VKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCV 118 (228)
Q Consensus 43 dEe~lf~~RaKLyrfdke~~~WkERG--vG~--LkLlk~ketgk~RIVMR~d~t~KV~lN~~I~~~M~l~~~~gsdKa~v 118 (228)
.|..|+..||.+|.+++.++.|...| .|- |.|.++...+.|||+.|+-+..++++|+.|+++|.+.. .++....
T Consensus 2 ~e~~i~~~~A~V~~~d~~~~~W~p~~~~~g~s~V~~~~d~~~~~yrIv~~~l~~~~vv~~~~l~~~~~y~~--~~p~Fh~ 79 (112)
T 1evh_A 2 SEQSICQARAAVMVYDDANKKWVPAGGSTGFSRVHIYHHTGNNTFRVVGRKIQDHQVVINCAIPKGLKYNQ--ATQTFHQ 79 (112)
T ss_dssp CEEEEEEEEEEEEEEETTTTEEEEGGGCCSCEEEEEEEETTTTEEEEEEEETTTCCEEEEEEECTTCCCBC--CSSSEEE
T ss_pred CceeEEEEEEEEEEEcCCCCceEECCCCCCceEEEEEEECCCCEEEEEEEECCCCcEEEeeEecCCceEEe--cCcccee
Confidence 37899999999999998888999987 343 99999987789999999877789999999999999876 3556667
Q ss_pred EEeeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHHHh
Q 027070 119 WHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQ 158 (228)
Q Consensus 119 w~a~D~adge~k~e~~lIRFksaE~A~eF~~~~ee~~e~~ 158 (228)
|. ++ ...|-+.|.+.++|..|...|+++.+.+
T Consensus 80 w~-----~~---~~~~GLnF~se~eA~~F~~~v~~al~~l 111 (112)
T 1evh_A 80 WR-----DA---RQVYGLNFGSKEDANVFASAMMHALEVL 111 (112)
T ss_dssp EE-----CS---SCEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred Ee-----cC---CEEEEEecCCHHHHHHHHHHHHHHHHhc
Confidence 76 22 1579999999999999999999998775
No 14
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4
Probab=99.30 E-value=5.2e-11 Score=94.02 Aligned_cols=106 Identities=18% Similarity=0.382 Sum_probs=91.6
Q ss_pred ceeEEEEeeeEEEEccCCCCcceece---e--EEEEEeeCCCCeEEEEEEeCC-cceEEeeeeecCCceeeecCCCCceE
Q 027070 44 EDAILDLKAKLYRFDKDGNQWKERGA---G--TVKLLKHKVTGKVRLVMRQSK-TLKICANHLVLPMMSVQEHAGNDKSC 117 (228)
Q Consensus 44 Ee~lf~~RaKLyrfdke~~~WkERGv---G--~LkLlk~ketgk~RIVMR~d~-t~KV~lN~~I~~~M~l~~~~gsdKa~ 117 (228)
|.+|+..||.||.+++.++.|...|. | .|.|.++...+.|||+.|+-+ ..++++|+.|+++|.+.. .++...
T Consensus 3 e~~i~~~~A~V~~~d~~~~~W~p~~~g~~gvs~V~~~~d~~~~~yrI~~~~l~~~~~vv~~~~l~~~l~y~~--~~p~FH 80 (115)
T 1egx_A 3 ETVICSSRATVMLYDDGNKRWLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQVVINCAIVRGVKYNQ--ATPNFH 80 (115)
T ss_dssp SCEEEEEEEECBEECTTTSSCCBSSCSCCCCEEEEEEEETTTTEEEEEEEESSTTCCEEEEEEECSSCCCCC--SSTTEE
T ss_pred ceeEEEEEEEEEEEcCCCCceeECCCCCCCccEEEEEEeCCCCEEEEEEEEcCCCCEEEEeeEEcCCceEEe--cCccce
Confidence 68999999999999988788999886 4 599999988899999999976 889999999999999876 355667
Q ss_pred EEEeeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHHHhh
Q 027070 118 VWHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQK 159 (228)
Q Consensus 118 vw~a~D~adge~k~e~~lIRFksaE~A~eF~~~~ee~~e~~~ 159 (228)
.|. ++ ...|-+.|.+.++|..|...|+++.+.++
T Consensus 81 ~w~-----~~---~~~~GLnF~se~eA~~F~~~v~~al~~l~ 114 (115)
T 1egx_A 81 QWR-----DA---RQVWGLNFGSKEDAAQFAAGMASALEALE 114 (115)
T ss_dssp EEE-----SS---SCEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred EEe-----cC---CEEEEEecCCHHHHHHHHHHHHHHHHHhc
Confidence 776 22 15799999999999999999999998763
No 15
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A
Probab=99.13 E-value=6.3e-10 Score=88.20 Aligned_cols=107 Identities=15% Similarity=0.249 Sum_probs=83.9
Q ss_pred cceeEEEEeeeEEEEccCCCCcceeceeE---EEEEeeC-----CCCeEEEEEEeCCcceEEeeeeecCCceeeecCCCC
Q 027070 43 DEDAILDLKAKLYRFDKDGNQWKERGAGT---VKLLKHK-----VTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGND 114 (228)
Q Consensus 43 dEe~lf~~RaKLyrfdke~~~WkERGvG~---LkLlk~k-----etgk~RIVMR~d~t~KV~lN~~I~~~M~l~~~~gsd 114 (228)
+|..|+..||.+|.+|+..+.|...|.|- +.|.+++ ..+.|||+.|+-+..+|++|+.|+++|.+.+. +.
T Consensus 2 ~~~~i~~~~A~V~~~d~~~~~W~p~~~g~ls~v~i~~~~~~~d~~~~~yrIv~~~l~~~~vv~~~~l~~~~~y~~~--~p 79 (118)
T 1xod_A 2 SDDSYARVRAVVMTRDDSSGGWLQLGGGGLSSVTVSKTLQPGDSGGTEFLVHGERLRDKTVVLECVLRRDLVYNKV--TP 79 (118)
T ss_dssp ---CCEEEEEEEEEECSSSSCEEEGGGCCCEEEEEECC---------CCEEEEEETTTCCEEEEEECCTTCEEEEE--ET
T ss_pred CCccEEEEEEEEeeEcCCCCCEeeCCCCCcccEEEEEecCcCCCCCCEEEEEEEECCCCeEEEEEEEeCCcEEEec--CC
Confidence 46889999999999998788999987665 5666654 34679999999777899999999999998763 45
Q ss_pred ceEEEEeeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHHHhh
Q 027070 115 KSCVWHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQK 159 (228)
Q Consensus 115 Ka~vw~a~D~adge~k~e~~lIRFksaE~A~eF~~~~ee~~e~~~ 159 (228)
....|.. . -..|-+.|.+.++|..|...|.++.+.+.
T Consensus 80 ~Fh~w~~-----~---~~~~GL~F~se~eA~~F~~~v~~al~~l~ 116 (118)
T 1xod_A 80 TFHHWRI-----G---DKKFGLTFQSPADARAFDRGIRRAIEDLS 116 (118)
T ss_dssp TEEEEEE-----T---TEEEEEEESSHHHHHHHHHHHHHHHHHHC
T ss_pred cceEEEe-----C---CEEEEEecCCHHHHHHHHHHHHHHHHHHh
Confidence 5667762 1 24699999999999999999999988764
No 16
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=99.10 E-value=1.6e-09 Score=86.96 Aligned_cols=108 Identities=18% Similarity=0.226 Sum_probs=88.8
Q ss_pred ccceeEEEEeeeEEEEccCCCCcceeceeE---EEEEeeC-----CCCeEEEEEEeCCcceEEeeeeecCCceeeecCCC
Q 027070 42 EDEDAILDLKAKLYRFDKDGNQWKERGAGT---VKLLKHK-----VTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGN 113 (228)
Q Consensus 42 EdEe~lf~~RaKLyrfdke~~~WkERGvG~---LkLlk~k-----etgk~RIVMR~d~t~KV~lN~~I~~~M~l~~~~gs 113 (228)
..+..|+..||-||.+|...+.|...|.|- +.|..++ ..+.|||+.++-+..++++|+.|+++|.+.+. +
T Consensus 10 ~~~~~i~~~~A~Vm~~D~~~~~W~p~~~g~ls~v~v~~~~~~~d~~~~~yrI~~~~l~d~~vv~~~~l~~~l~Y~~~--~ 87 (126)
T 2jp2_A 10 DDDSYIVRVKAVVMTRDDSSGGWFPQEGGGISRVGVCKVMHPEGNGRSGFLIHGERQKDKLVVLECYVRKDLVYTKA--N 87 (126)
T ss_dssp SCCSEEEEEEEEEEEECTTSSSSEECSCCSCEEEEEECCBCTTCSSCBCEEEEEEESSSSCEEEEEEESSCCCEEEE--E
T ss_pred CCcceEEEEEEEEeeEcCCCCCEeeCCCCCcccEEEEEecCCCCCCCCEEEEEEEEcCCCeEEEEEEEeCCceEEec--C
Confidence 367899999999999998778999988776 5666554 34679999999777899999999999998763 4
Q ss_pred CceEEEEeeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHHHhh
Q 027070 114 DKSCVWHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQK 159 (228)
Q Consensus 114 dKa~vw~a~D~adge~k~e~~lIRFksaE~A~eF~~~~ee~~e~~~ 159 (228)
.....|.. .. ..|-+.|.+.+.|..|..+|.++.+.+.
T Consensus 88 p~FH~w~~-----~~---~~~GLnF~se~eA~~F~~~v~~al~~l~ 125 (126)
T 2jp2_A 88 PTFHHWKV-----DN---RKFGLTFQSPADARAFDRGVRKAIEDLI 125 (126)
T ss_dssp TTEEEEEC-----SS---SEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CcceEEEc-----CC---EEEEEecCCHHHHHHHHHHHHHHHHHhh
Confidence 55667762 21 3599999999999999999999988764
No 17
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain, human sprouty-related, EVH1 domain-containing PR Q7Z699; 2.45A {Homo sapiens}
Probab=98.80 E-value=1.4e-07 Score=76.12 Aligned_cols=104 Identities=12% Similarity=0.188 Sum_probs=84.6
Q ss_pred eEEEEeeeEEEEccCCCCcceec---eeEEEEEeeCC-----CCeEEEEEEeCCcceEEeeeeecCCceeeecCCCCceE
Q 027070 46 AILDLKAKLYRFDKDGNQWKERG---AGTVKLLKHKV-----TGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSC 117 (228)
Q Consensus 46 ~lf~~RaKLyrfdke~~~WkERG---vG~LkLlk~ke-----tgk~RIVMR~d~t~KV~lN~~I~~~M~l~~~~gsdKa~ 117 (228)
..|..||-+|.+|+.++.|..-| +-.+.|.++.. .+.+||+-|+-+-.+|+||+.|.++|.+.+. ++..-
T Consensus 12 ~~~~~rA~Vm~~Dd~tk~WlP~gg~glS~v~iy~~~~~~~~~~~~yRIvg~r~~d~~vvinc~I~~~l~Ynka--tp~FH 89 (130)
T 3syx_A 12 SYARVRAVVMTRDDSSGGWLPLGGSGLSSVTVFKVPHQEENGCADFFIRGERLRDKMVVLECMLKKDLIYNKV--TPTFH 89 (130)
T ss_dssp EEEEEEEEEEEECSSSSCEEESSSSCCEEEEEEEEESSSTTSSEEEEEEEEETTTCCEEEEEECCTTCEEEEE--ETTEE
T ss_pred eeeEEEEEeeeEcCCCCceEeCCCCCCceEEEEeccCCCCCCCcEEEEEEEecCCCeEEEeeeecCCceEEec--ccccc
Confidence 57899999999999888999865 44666766522 2579999997666689999999999999774 45577
Q ss_pred EEEeeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHHHhh
Q 027070 118 VWHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQK 159 (228)
Q Consensus 118 vw~a~D~adge~k~e~~lIRFksaE~A~eF~~~~ee~~e~~~ 159 (228)
.|. | +. +.|=|.|.+.++|..|...|..|.+.+.
T Consensus 90 qWr--d---~~---~~yGL~F~S~~dA~~F~~~~~~Al~~L~ 123 (130)
T 3syx_A 90 HWK--I---DD---KKFGLTFQSPADARAFDRGIRRAIEDIS 123 (130)
T ss_dssp EEE--E---TT---EEEEEEESSHHHHHHHHHHHHHHHHGGG
T ss_pred ccc--c---cC---eEeecccCCHHHHHHHHHHHHHHHHHHh
Confidence 777 3 21 4599999999999999999999999886
No 18
>1mke_A WIP - N-WAsp, fusion protein consisting of wiskott-aldrich syndrome protein interacting protein...; polyproline, protein-protein complex; NMR {Rattus norvegicus} SCOP: b.55.1.4
Probab=97.49 E-value=0.0023 Score=52.67 Aligned_cols=102 Identities=15% Similarity=0.228 Sum_probs=78.6
Q ss_pred eeEEEEeeeEEEEccCCCCcceeceeEEEEEeeCCCCe--EEEEEEeCCcceEEeeeeecCCceeeecCCCCceEEEEee
Q 027070 45 DAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGK--VRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAA 122 (228)
Q Consensus 45 e~lf~~RaKLyrfdke~~~WkERGvG~LkLlk~ketgk--~RIVMR~d~t~KV~lN~~I~~~M~l~~~~gsdKa~vw~a~ 122 (228)
.+|...=|.||..+.. +.|.-.+.|.|-|.+...... .||+=.. .++++.++-|+.+|.+.... ....+|-.
T Consensus 41 ~~lataVaqLy~a~~~-~~W~~~~~Gal~~VkD~~~rsyf~RlvDl~--~~~viweqELY~~f~Y~~~r--~~FHtFe~- 114 (152)
T 1mke_A 41 VTMSSAVVQLYAADRN-CMWSKKCSGVACLVKDNPQRSYFLRIFDIK--DGKLLWEQELYNNFVYNSPR--GYFHTFAG- 114 (152)
T ss_dssp EEEEEEEEEEEEEETT-TEEEEEEEEEEEEEEETTTTEEEEEEECSS--SCSEEEEEECCSSCCCBCSS--SSEEEEEC-
T ss_pred cEEEEeeEEEEEECCC-CceEecCceEEEEEEECCCCeEEEEEEEcc--CCeEEEEeecccceeeccCC--CeEEEEec-
Confidence 4677788999999763 799999999999988865444 4888776 45899999999999986532 22333321
Q ss_pred ecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHHHhh
Q 027070 123 DYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQK 159 (228)
Q Consensus 123 D~adge~k~e~~lIRFksaE~A~eF~~~~ee~~e~~~ 159 (228)
++ ..+.+.|.+.+.|..|...|........
T Consensus 115 ---d~----c~~GLnFade~EA~~F~~~V~~~l~~~~ 144 (152)
T 1mke_A 115 ---DT----CQVALNFANEEEAKKFRKAVTDLLGRRQ 144 (152)
T ss_dssp ---SS----SEEEEEESSHHHHHHHHHHHHHHHHHCC
T ss_pred ---CC----cEEEEeeCCHHHHHHHHHHHHHHHHHHH
Confidence 22 3699999999999999999998876654
No 19
>2ifs_A N-WAsp, wiskott-aldrich syndrome protien ineracting protein and neural wiskott-aldrich syndrome...; verprolin, polyproline, protein- protein complex; NMR {Homo sapiens}
Probab=97.44 E-value=0.002 Score=53.89 Aligned_cols=101 Identities=15% Similarity=0.242 Sum_probs=77.9
Q ss_pred eEEEEeeeEEEEccCCCCcceeceeEEEEEeeCCCCe--EEEEEEeCCcceEEeeeeecCCceeeecCCCCceEEEEeee
Q 027070 46 AILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGK--VRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAAD 123 (228)
Q Consensus 46 ~lf~~RaKLyrfdke~~~WkERGvG~LkLlk~ketgk--~RIVMR~d~t~KV~lN~~I~~~M~l~~~~gsdKa~vw~a~D 123 (228)
+|...=|.||.-+.. +.|.-.++|.|-|.+...... .||+=..+ ++++.++-|+.+|.+.... ....+|-
T Consensus 59 ~lataVaqLy~a~~~-~~W~~~~~Gal~~vkD~~~rsyf~RlvDl~~--~~vvweqELY~~f~Y~~~r--~~FHtFe--- 130 (169)
T 2ifs_A 59 TMSSAVVQLYAADRN-CMWSKKCSGVACLVKDNPQRSYFLRIFDIKD--GKLLWEQELYNNFVYNSPR--GYFHTFA--- 130 (169)
T ss_dssp EEEEEEEEEEEEETT-TEEEEEEEEEEEEEEETTTTEEEEEEEETTT--CCCCEEEECCSSCCCBCCC--SSEEEEE---
T ss_pred EEEEEEEEEEEECCC-CeeEecCceEEEEEEECCCCeEEEEEEEccC--CeEEEEeecccceeeccCC--CeEEEee---
Confidence 566677899999763 799999999999988865444 48888874 5899999999999986532 2233332
Q ss_pred cCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHHHhh
Q 027070 124 YADGELKDELFCIRFGSVENCKSFMEMVHEVAESQK 159 (228)
Q Consensus 124 ~adge~k~e~~lIRFksaE~A~eF~~~~ee~~e~~~ 159 (228)
.++ ..+.+.|.+.+.|..|..+|........
T Consensus 131 -~d~----c~~GLnFade~EA~~F~~~V~~~l~~~~ 161 (169)
T 2ifs_A 131 -GDT----CQVALNFANEEEAKKFRKAVTDLLGRRQ 161 (169)
T ss_dssp -CSS----SEEEEECSCHHHHHHHHHHHHHHHHHCS
T ss_pred -cCC----cEEEEeeCCHHHHHHHHHHHHHHHHHHH
Confidence 122 4699999999999999999998876654
No 20
>2lyd_A Decapping protein 1; DCP1, XRN1, transcription-protein binding complex; NMR {Drosophila melanogaster}
Probab=95.65 E-value=0.59 Score=37.34 Aligned_cols=101 Identities=12% Similarity=0.275 Sum_probs=72.7
Q ss_pred eeEEE-EeeeEEEEccCCCCcceece-eEEEEEeeCCCCeEEEEEE-eCCcceEEeeeeecCCceeeecCCCCceEEEEe
Q 027070 45 DAILD-LKAKLYRFDKDGNQWKERGA-GTVKLLKHKVTGKVRLVMR-QSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA 121 (228)
Q Consensus 45 e~lf~-~RaKLyrfdke~~~WkERGv-G~LkLlk~ketgk~RIVMR-~d~t~KV~lN~~I~~~M~l~~~~gsdKa~vw~a 121 (228)
++|+. ..|-||.|+...++|.-.|+ |+|-|.+....-+++|++= |-++..++ ..|+++|.+..+ +..+.|..
T Consensus 30 ~Il~~a~~v~vY~f~~~~~~W~K~~iEG~LFv~~R~~~P~~~~ivLNR~~~~n~~--~~l~~~~~~e~~---~~~li~r~ 104 (134)
T 2lyd_A 30 EIVDSSSHVAFYTFNSSQNEWEKTDVEGAFFIYHRNAEPFHSIFINNRLNTTSFV--EPITGSLELQSQ---PPFLLYRN 104 (134)
T ss_dssp EEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEECSSSSSEEEEEEETTTTEEEE--EECCSSCEEEEE---TTEEEEEE
T ss_pred HHHhhCCeEEEEEecCCcCceeEcCCcceEEEEEccCCCceEEEEEcCCCCccee--EEcCCCcEEEee---CCEEEEEC
Confidence 45555 66999999988889977665 8888877665566765443 44444444 457889998865 33565553
Q ss_pred eecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHHH
Q 027070 122 ADYADGELKDELFCIRFGSVENCKSFMEMVHEVAES 157 (228)
Q Consensus 122 ~D~adge~k~e~~lIRFksaE~A~eF~~~~ee~~e~ 157 (228)
.+ ...|-|=|-+.+++......|+.+.++
T Consensus 105 ~~-------~~I~GiWf~~~~d~~~i~~~l~~l~~~ 133 (134)
T 2lyd_A 105 ER-------SRIRGFWFYNSEECDRISGLVNGLLKS 133 (134)
T ss_dssp GG-------GEEEEEEESSHHHHHHHHHHHHHHHHC
T ss_pred CC-------CcEEEEEecChHHHHHHHHHHHHHHhc
Confidence 22 257889999999999999999988753
No 21
>1tqz_A Necap1; endocytosis, structural genomics, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: b.55.1.11
Probab=95.25 E-value=0.24 Score=39.85 Aligned_cols=113 Identities=16% Similarity=0.226 Sum_probs=84.6
Q ss_pred ccceeEEEEe-eeEEEEccC--C-----CCcce---eceeEEEEEeeCCCCeEEEEEEeCCcceEEeeeee--cCCceee
Q 027070 42 EDEDAILDLK-AKLYRFDKD--G-----NQWKE---RGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLV--LPMMSVQ 108 (228)
Q Consensus 42 EdEe~lf~~R-aKLyrfdke--~-----~~WkE---RGvG~LkLlk~ketgk~RIVMR~d~t~KV~lN~~I--~~~M~l~ 108 (228)
+=|.+||..+ |-+|+.-+- + ..|.. .=+|-|||.... ..+-|.+-...++.+-++++| +++..+.
T Consensus 6 ~~E~vL~v~~ev~VY~IPP~~s~~GyrA~dW~~~~~~wtGrlrv~~~g--~~~~I~LeD~~tGeLFA~cPv~~~~~~~VE 83 (133)
T 1tqz_A 6 EYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKG--KIAYIKLEDKVSGELFAQAPVEQYPGIAVE 83 (133)
T ss_dssp CCSCCCBCCSSEEEEECCSCCSSSSCCHHHHCCSSSCEEEEEEEECCS--SSEEEEEECSSCCSSCEEEEECSSCCCCEE
T ss_pred ceeEEEEEcCcEEEEecCCCCCCCCcccccCCCCCceeEEEEEEEEeC--CEEEEEEEeCCCCcEEEeCcccCCCCcceE
Confidence 3466777755 667776431 1 23432 358999997654 355666666678999999999 7788888
Q ss_pred ecCCCCceEEEEeeecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHHHHhh
Q 027070 109 EHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSFMEMVHEVAESQK 159 (228)
Q Consensus 109 ~~~gsdKa~vw~a~D~adge~k~e~~lIRFksaE~A~eF~~~~ee~~e~~~ 159 (228)
+...|.|.+++...| +.++-..+=|=|..=.+|=.|..++++..+-++
T Consensus 84 ~v~DSSRYFVlRv~d---~~gr~AfiGiGF~eR~dAFDF~vaLqd~~k~~~ 131 (133)
T 1tqz_A 84 TVTDSSRYFVIRIQD---GTGRSAFIGIGFTDRGDAFDFNVSLQDHFKWVK 131 (133)
T ss_dssp ECTTCCSCEEEEEEE---TTTEEEEEEEECSCHHHHHHHHHHHHHHHSCSS
T ss_pred EeecCcCeEEEEEEC---CCCcEEEEeeeecccccccchHHHHHHHHHHHh
Confidence 887888999988777 455778899999999999999999999887654
No 22
>2qkl_A DCP1 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} PDB: 2qkm_A*
Probab=93.89 E-value=1.3 Score=34.93 Aligned_cols=98 Identities=15% Similarity=0.270 Sum_probs=64.5
Q ss_pred eeEEE-EeeeEEEEccCCCCcceece-eEEEEEeeCCCCeEEEE-EEeCCcceEEeeeeecCCceeeecCCCCceEEEEe
Q 027070 45 DAILD-LKAKLYRFDKDGNQWKERGA-GTVKLLKHKVTGKVRLV-MRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA 121 (228)
Q Consensus 45 e~lf~-~RaKLyrfdke~~~WkERGv-G~LkLlk~ketgk~RIV-MR~d~t~KV~lN~~I~~~M~l~~~~gsdKa~vw~a 121 (228)
++|.. ..|-||.|+...++|...|+ |+|-|.+.. ..+++|+ |=|.++-..+ ..|+++|.++.+ +..+.+..
T Consensus 25 ~Il~~a~~v~vY~f~~~~~~W~K~~iEGtLFv~~R~-~P~~~~iVlNR~~~~n~~--~~i~~~~~~e~~---~~~l~~r~ 98 (127)
T 2qkl_A 25 SIIDIASHVAVYQFDVGSQKWLKTSIEGTFFLVKDQ-RARVGYVILNRNSPENLY--LFINHPSNVHLV---DRYLIHRT 98 (127)
T ss_dssp EEEEEEEEEEEECC------CCEEEEEEEEEEEEET-TCCEEEEEEESSSSCCEE--EEECSGGGEEEE---TTEEEEEE
T ss_pred HHhccCCeEEEEEecCCCCceEEcCcEEEEEEEEcc-CCceEEEEEcCCCCcCee--EecCCCceEEEe---CCEEEEEc
Confidence 34443 67999999988899988776 888887776 5556644 4444444443 467888888865 23566654
Q ss_pred eecCCCCceeeEEEEEeCCHHHHHHHHHHHHHHH
Q 027070 122 ADYADGELKDELFCIRFGSVENCKSFMEMVHEVA 155 (228)
Q Consensus 122 ~D~adge~k~e~~lIRFksaE~A~eF~~~~ee~~ 155 (228)
.+ ...|-|=|-+.++++.....|+.+.
T Consensus 99 ~~-------~~i~GiWf~~~~d~~~i~~~l~~ll 125 (127)
T 2qkl_A 99 EN-------QHVVGLWMFDPNDMSRIFNIVKESL 125 (127)
T ss_dssp TT-------TEEEEEEESSTHHHHHHHHHHHHHT
T ss_pred CC-------CcEEEEEEEchHHHHHHHHHHHHHH
Confidence 21 3579999999999999999988764
No 23
>2oqb_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase, transcriptional regulati activation domain; 1.69A {Rattus norvegicus}
Probab=92.69 E-value=3 Score=32.81 Aligned_cols=76 Identities=9% Similarity=0.048 Sum_probs=49.9
Q ss_pred eEEEEEeeCCCCeEEEEEEeCCcceEEeeeeecCCceeeecCCCCceEEEEeeecCCCCceeeEEEEEeCCHHHHHHHHH
Q 027070 70 GTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSFME 149 (228)
Q Consensus 70 G~LkLlk~ketgk~RIVMR~d~t~KV~lN~~I~~~M~l~~~~gsdKa~vw~a~D~adge~k~e~~lIRFksaE~A~eF~~ 149 (228)
..|+|..+-+..-.-|.+-.+ .+..+.-.+|++...+.... .++++++. | -..++|||.|..+++.|..
T Consensus 32 q~v~L~~~ydpqg~sv~i~~~-~~~~l~ef~V~~~TEc~rVG--k~S~litl-g-------~~slLl~Fas~~d~~~F~~ 100 (117)
T 2oqb_A 32 QALRLEVRAGPDAAGIALYSH-EDVCVFKCSVSRETECSRVG--RQSFIITL-G-------CNSVLIQFATPHDFCSFYN 100 (117)
T ss_dssp EEEEEEEEECSSEEEEEEECT-TCCEEEEEEEETTSEEEEET--TTEEEEEE-T-------TEEEEEECSSHHHHHHHHH
T ss_pred ceEEEEEEECCCCcEEEEEcC-CCeEEEEEEecCCccceeec--CeEEEEEE-C-------CcEEEEEeCCHHHHHHHHH
Confidence 455554443333333333332 25556667778888877753 35777763 2 2579999999999999999
Q ss_pred HHHHHHH
Q 027070 150 MVHEVAE 156 (228)
Q Consensus 150 ~~ee~~e 156 (228)
.+..++.
T Consensus 101 ~l~k~~~ 107 (117)
T 2oqb_A 101 ILKTCRG 107 (117)
T ss_dssp HHHHHTT
T ss_pred HHHHHhc
Confidence 9999874
No 24
>3so6_A LDL receptor adaptor protein; PTB, endocytic adaptor, autosomal reces hypercholesterolemia, ARH, cholesterol; 1.37A {Rattus norvegicus}
Probab=47.54 E-value=86 Score=23.42 Aligned_cols=77 Identities=14% Similarity=0.055 Sum_probs=46.0
Q ss_pred EEEEeeCCCCeEEEEEEeCCcceEEeeeeecCCceeeecCCCCceEEEEeeecCCCCceeeEEEEEeCCHHHHHHHHHHH
Q 027070 72 VKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVENCKSFMEMV 151 (228)
Q Consensus 72 LkLlk~ketgk~RIVMR~d~t~KV~lN~~I~~~M~l~~~~gsdKa~vw~a~D~adge~k~e~~lIRFksaE~A~eF~~~~ 151 (228)
+.|.-+. ..+||+ ...+..++.+|+|..=.-+.....+.+.+-|.+-|-. .....-++++..+...|+.+...|
T Consensus 46 v~L~Vs~--~gi~l~--d~~~~~~~~~~~i~~Isf~~~d~~~~~~FafI~r~~~--~~~~~CHvF~c~~~~~A~~i~~~l 119 (137)
T 3so6_A 46 VTLKVSP--RGIILT--DSLTSQLIENVSIYRISYCTADKMHDKVFAYIAQSQQ--NESLECHAFLCTKRKVAQAVTLTV 119 (137)
T ss_dssp EEEEEET--TEEEEE--ETTTCCEEEEEEGGGEEEEEECSSSTTEEEEEEECSS--SSCEEEEEEECSSHHHHHHHHHHH
T ss_pred EEEEEeC--CeEEEE--ECCCCcEEEeeccCEEEEEEecCCCCCEEEEEEEcCC--CCeEEEEEEEeCCHHHHHHHHHHH
Confidence 4444442 346654 3346678888887653233333344567778776632 234567888888777777766666
Q ss_pred HHH
Q 027070 152 HEV 154 (228)
Q Consensus 152 ee~ 154 (228)
..|
T Consensus 120 ~~A 122 (137)
T 3so6_A 120 AQA 122 (137)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 25
>1q67_A Decapping protein involved in mRNA degradation- DCP1P; beta sandwich, transcription; 2.30A {Saccharomyces cerevisiae} SCOP: b.55.1.7
Probab=31.23 E-value=2.5e+02 Score=24.13 Aligned_cols=27 Identities=19% Similarity=0.393 Sum_probs=23.7
Q ss_pred eeEEEEEeCCHHHHHHHHHHHHHHHHH
Q 027070 131 DELFCIRFGSVENCKSFMEMVHEVAES 157 (228)
Q Consensus 131 ~e~~lIRFksaE~A~eF~~~~ee~~e~ 157 (228)
.+.|-|=|=+.++++.....|+.|.+.
T Consensus 198 ~eVyGIWih~~~Dr~~I~eLik~llen 224 (231)
T 1q67_A 198 HEVYGIWIHTVSDRQNIYELIKYLLEN 224 (231)
T ss_dssp SCEEEEEESSHHHHHHHHHHHHHHHHS
T ss_pred CcEEEEEEccHHHHHHHHHHHHHHHhc
Confidence 467899999999999999999998865
No 26
>1a7g_E E2 DBD, regulatory protein E2; transcription regulation, cervical cance; 2.40A {Human papillomavirus type 31} SCOP: d.58.8.1 PDB: 1dhm_A
Probab=28.58 E-value=32 Score=25.07 Aligned_cols=33 Identities=18% Similarity=0.411 Sum_probs=24.9
Q ss_pred eEEEEeeecCCCCceeeEEEEEeCCHHHHHHHHHHH
Q 027070 116 SCVWHAADYADGELKDELFCIRFGSVENCKSFMEMV 151 (228)
Q Consensus 116 a~vw~a~D~adge~k~e~~lIRFksaE~A~eF~~~~ 151 (228)
.|.|++-+-.+ ....++|-|.|.+..+.|++.+
T Consensus 35 TW~Wv~~~~~~---~~ar~lv~F~s~~QR~~FL~~V 67 (82)
T 1a7g_E 35 TWHWTCTDGKH---KNAIVTLTYISTSQRDDFLNTV 67 (82)
T ss_dssp CEECTTCCCTT---TTEEEEEECSCHHHHHHHHHHS
T ss_pred EEEeeCCCCCC---CceEEEEEECCHHHHHHHHhcC
Confidence 58888443222 3567999999999999999865
No 27
>2q79_A Regulatory protein E2; beta barrel, DNA binding protein; 1.80A {Human papillomavirus type 16} SCOP: d.58.8.1 PDB: 1by9_A 1r8p_A 1zzf_A 3mi7_X
Probab=28.28 E-value=26 Score=26.30 Aligned_cols=33 Identities=15% Similarity=0.352 Sum_probs=23.0
Q ss_pred eEEEEeeecCCCCceeeEEEEEeCCHHHHHHHHHHH
Q 027070 116 SCVWHAADYADGELKDELFCIRFGSVENCKSFMEMV 151 (228)
Q Consensus 116 a~vw~a~D~adge~k~e~~lIRFksaE~A~eF~~~~ 151 (228)
.|.|++-+-.+ ....++|-|.|.+.++.|++.+
T Consensus 34 TW~Wv~~~~~~---g~armlv~F~s~~QR~~FL~tV 66 (93)
T 2q79_A 34 TWHWTGHNVKH---KSAIVTLTYDSEWQRDQFLSQV 66 (93)
T ss_dssp CBCCC---------CCEEEEEECSSHHHHHHHHHHS
T ss_pred EEEeeCCCCCC---CceEEEEEECCHHHHHHHHhcC
Confidence 58888543222 4567999999999999999865
No 28
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B
Probab=28.08 E-value=2e+02 Score=21.91 Aligned_cols=81 Identities=10% Similarity=0.142 Sum_probs=43.1
Q ss_pred CcceeceeEEEEEeeCCCCeEEEEEEeCCcc--eEEeeeeecCCceeeecCCCCc-eEEEEeeecCCCCceeeEEEEEeC
Q 027070 63 QWKERGAGTVKLLKHKVTGKVRLVMRQSKTL--KICANHLVLPMMSVQEHAGNDK-SCVWHAADYADGELKDELFCIRFG 139 (228)
Q Consensus 63 ~WkERGvG~LkLlk~ketgk~RIVMR~d~t~--KV~lN~~I~~~M~l~~~~gsdK-a~vw~a~D~adge~k~e~~lIRFk 139 (228)
.||-.+ |+|.|... ||.=+.+... -||+...=..++..+|- ++.| .+.....+ ...|.+.|.
T Consensus 16 ~yKK~d-GtL~l~~d------~i~W~p~~~~~~~vs~~~~~I~~qq~SP~-~k~KVqLqi~l~~-------~~~~~F~Ft 80 (108)
T 1pfj_A 16 RQKKQD-GALYLMAE------RIAWAPEGKDRFTISHMYADIKCQKISPE-GKAKIQLQLVLHA-------GDTTNFHFS 80 (108)
T ss_dssp BCSSCB-CEEEEETT------EEEEECSSSSSCSEEEETTTCCCEEECCS-SSSSCEEEEECSS-------SCEEEEECC
T ss_pred eeecCC-ceEEEEcc------eEEEccCCCCCceEEEehhhhhcceeCCC-CCccEEEEEEEeC-------CCceEEEEc
Confidence 344333 88888443 7766654433 44433222224445553 3334 23333222 256888898
Q ss_pred CH----HHHHHHHHHHHHHHHHh
Q 027070 140 SV----ENCKSFMEMVHEVAESQ 158 (228)
Q Consensus 140 sa----E~A~eF~~~~ee~~e~~ 158 (228)
|+ .+|+.+++.++.+....
T Consensus 81 n~~~a~~erd~VKd~L~~~l~~~ 103 (108)
T 1pfj_A 81 NESTAVKERDAVKDLLQQLLPKF 103 (108)
T ss_dssp CSSCTTHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH
Confidence 86 46777887777766544
No 29
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens}
Probab=24.97 E-value=2.7e+02 Score=22.32 Aligned_cols=30 Identities=13% Similarity=0.348 Sum_probs=27.3
Q ss_pred eeEEEEEeCCHHHHHHHHHHHHHHHHHhhh
Q 027070 131 DELFCIRFGSVENCKSFMEMVHEVAESQKK 160 (228)
Q Consensus 131 ~e~~lIRFksaE~A~eF~~~~ee~~e~~~~ 160 (228)
++.|-+++.|++..+.++.+|+.|.+....
T Consensus 147 ~~~yel~a~s~~er~~W~~~I~~Ai~~~~~ 176 (185)
T 2lg1_A 147 PEMVEVHASSKEERNSWIQIIQDTINTLNR 176 (185)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCHHHHHHHHHHHHHHHHhCCh
Confidence 578999999999999999999999998863
No 30
>1r8h_A Regulatory protein E2; anti-parallel beta-barrel, DNA-binding domain, transcription, replication; 1.90A {Human papillomavirus type 6A} SCOP: d.58.8.1 PDB: 2ayb_A 2aye_A 2ayg_A
Probab=24.92 E-value=33 Score=25.28 Aligned_cols=33 Identities=18% Similarity=0.452 Sum_probs=24.8
Q ss_pred eEEEEeeecCCCCceeeEEEEEeCCHHHHHHHHHHH
Q 027070 116 SCVWHAADYADGELKDELFCIRFGSVENCKSFMEMV 151 (228)
Q Consensus 116 a~vw~a~D~adge~k~e~~lIRFksaE~A~eF~~~~ 151 (228)
.|.|++-+-.+ ....++|-|.|.+..+.|++.+
T Consensus 37 TW~Wv~~~~~~---g~ar~lv~F~s~~QR~~FL~~V 69 (87)
T 1r8h_A 37 TWHWASPKAPH---KHAIVTVTYHSEEQRQQFLNVV 69 (87)
T ss_dssp CBCBCSTTCSC---CCEEEEEECSSHHHHHHHHHHC
T ss_pred EEEeeCCCCCC---CceEEEEEECCHHHHHHHHhcC
Confidence 58888433222 4567999999999999999865
No 31
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=23.25 E-value=98 Score=21.58 Aligned_cols=23 Identities=9% Similarity=0.229 Sum_probs=16.6
Q ss_pred EEEEEeeCCCCeEEEEEEe-CCcc
Q 027070 71 TVKLLKHKVTGKVRLVMRQ-SKTL 93 (228)
Q Consensus 71 ~LkLlk~ketgk~RIVMR~-d~t~ 93 (228)
++.+-.+.+||.+.||-|| |+.+
T Consensus 28 ~F~vF~n~etg~~nVVYRR~dG~y 51 (65)
T 3ka5_A 28 NFFVFQNGDSNEVNVVYKRKDGNY 51 (65)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCE
T ss_pred cEEEEEeCCCCCEEEEEEeCCCCE
Confidence 3556677788999999998 4433
No 32
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=22.08 E-value=98 Score=21.61 Aligned_cols=20 Identities=10% Similarity=0.262 Sum_probs=15.2
Q ss_pred EEEEEeeCCCCeEEEEEEeC
Q 027070 71 TVKLLKHKVTGKVRLVMRQS 90 (228)
Q Consensus 71 ~LkLlk~ketgk~RIVMR~d 90 (228)
++.+-.+.+||.+.||-||.
T Consensus 29 ~F~vF~n~etg~~nVVYRR~ 48 (66)
T 3lyv_A 29 DFFIYTDSEDGATNILYRRE 48 (66)
T ss_dssp SEEEEEETTTCSEEEEEECT
T ss_pred cEEEEEeCCCCCEEEEEEEC
Confidence 35566777889999999883
No 33
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=20.61 E-value=1.1e+02 Score=20.62 Aligned_cols=18 Identities=11% Similarity=0.139 Sum_probs=14.6
Q ss_pred EEEEeeCCCCeEEEEEEe
Q 027070 72 VKLLKHKVTGKVRLVMRQ 89 (228)
Q Consensus 72 LkLlk~ketgk~RIVMR~ 89 (228)
+.+-.+.+||+++||-||
T Consensus 29 F~vF~n~~t~~~nVvYrR 46 (57)
T 3k2t_A 29 FYVYTDAETNGTNIVYSR 46 (57)
T ss_dssp EEEEEBSSSCCEEEEEEC
T ss_pred EEEEEcCCCCCEEEEEEe
Confidence 556677788999999998
Done!