BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027071
(228 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZYY|X Chain X, Reductive Activator For Corrinoid,Iron-Sulfur Protein
pdb|3ZYY|Y Chain Y, Reductive Activator For Corrinoid,Iron-Sulfur Protein
Length = 631
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 163 YIPAAKFHFELSPMQVVITEDPKSFSHFITNVCAIIGGVFTVAGILDAILHNTMRLMKKV 222
Y PAA F + + I +PK F + + NV + +GG T +G+L L N+ + +
Sbjct: 318 YTPAALFIPPVPATEAKIEMNPKGFVYIMPNVASYVGGDIT-SGVLYTGLANSDEITLFI 376
Query: 223 EIGKN 227
+IG N
Sbjct: 377 DIGTN 381
>pdb|2GHP|A Chain A, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|B Chain B, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|C Chain C, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|D Chain D, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|E Chain E, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|F Chain F, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|G Chain G, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|H Chain H, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
Length = 292
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 24 TTAENVKRPAPKAGGCRIEGYVRVKKVPGNLIISARSGAHSFDTSEMNMSHVISHL 79
T+ E+ + K G +IEGY V KV L S R+ + + + E+ + ++ + L
Sbjct: 167 TSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRTDSATLEGREIXIRNLSTEL 222
>pdb|3TNG|A Chain A, The Crystal Structure Of A Possible Phosphate
AcetylBUTARYL Transferase From Listeria Monocytogenes
Egd-E.
pdb|3U9E|A Chain A, The Crystal Structure Of A Possible Phosphate
AcetylBUTARYL Transferase (From Listeria Monocytogenes
Egd-E) In Complex With Coa.
pdb|3U9E|B Chain B, The Crystal Structure Of A Possible Phosphate
AcetylBUTARYL Transferase (From Listeria Monocytogenes
Egd-E) In Complex With Coa.
pdb|3UF6|A Chain A, The Crystal Structure Of A Possible Phosphate
AcetylBUTARYL Transferase (From Listeria Monocytogenes
Egd-E) In Complex With Cod (3'-Dephosphocoenzyme A)
pdb|3UF6|B Chain B, The Crystal Structure Of A Possible Phosphate
AcetylBUTARYL Transferase (From Listeria Monocytogenes
Egd-E) In Complex With Cod (3'-Dephosphocoenzyme A)
Length = 291
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 188 SHFITNVCAIIGGVFTVAGILDAILHNTMRLMKKVEIGK 226
S F ++V VF VAG D ++ T+RL K ++GK
Sbjct: 7 SRFFSDVAETSSFVFAVAGADDEVVLETIRLALKQKLGK 45
>pdb|3H32|B Chain B, Crystal Structure Of D-Dimer From Human Fibrin Complexed
With Gly-His- Arg-Pro-Tyr-Amide
pdb|3H32|E Chain E, Crystal Structure Of D-Dimer From Human Fibrin Complexed
With Gly-His- Arg-Pro-Tyr-Amide
Length = 458
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 6 APIPLEESHKLALDGKHKTTAENVKRPAPKAGGC 39
AP P+ A K T + V+R AP AGGC
Sbjct: 32 APPPISGGGYRARPAKAAATQKKVERKAPDAGGC 65
>pdb|3GHG|B Chain B, Crystal Structure Of Human Fibrinogen
pdb|3GHG|E Chain E, Crystal Structure Of Human Fibrinogen
pdb|3GHG|H Chain H, Crystal Structure Of Human Fibrinogen
pdb|3GHG|K Chain K, Crystal Structure Of Human Fibrinogen
Length = 461
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 6 APIPLEESHKLALDGKHKTTAENVKRPAPKAGGC 39
AP P+ A K T + V+R AP AGGC
Sbjct: 32 APPPISGGGYRARPAKAAATQKKVERKAPDAGGC 65
>pdb|3VUO|A Chain A, Crystal Structure Of Nontoxic Nonhemagglutinin Subcomponent
(Ntnha) From Clostridium Botulinum Serotype D Strain 4947
Length = 1196
Score = 28.5 bits (62), Expect = 3.0, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 99 YLGGSHDRLNGR--SFINHREVGANVTIEHYLQIVKTEVIT 137
Y+ S DRL + FIN + V ANV+IE L I T VI+
Sbjct: 964 YISISVDRLKDQLLIFINDKNV-ANVSIEQILNIYSTNVIS 1003
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,524,129
Number of Sequences: 62578
Number of extensions: 251664
Number of successful extensions: 488
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 482
Number of HSP's gapped (non-prelim): 7
length of query: 228
length of database: 14,973,337
effective HSP length: 95
effective length of query: 133
effective length of database: 9,028,427
effective search space: 1200780791
effective search space used: 1200780791
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)