Query 027071
Match_columns 228
No_of_seqs 103 out of 522
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 07:00:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027071.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027071hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cx5_I Cytochrome B-C1 complex 31.1 31 0.0011 23.4 2.4 28 194-221 17-44 (65)
2 1pp9_J Ubiquinol-cytochrome C 23.2 60 0.0021 21.8 2.7 29 193-221 20-48 (62)
3 3arc_X Photosystem II PSBX pro 12.4 1.4E+02 0.0047 18.2 2.2 26 185-213 4-29 (39)
4 1pfi_A Major coat protein of P 11.0 1.6E+02 0.0054 18.2 2.2 25 186-214 21-45 (46)
5 2ks1_B Epidermal growth factor 10.9 79 0.0027 19.7 0.8 14 195-208 15-28 (44)
6 3lti_A DNA-directed RNA polyme 9.6 1.1E+02 0.0039 26.6 1.6 26 166-191 34-63 (296)
7 1y8q_A Ubiquitin-like 1 activa 8.6 61 0.0021 28.4 -0.5 13 191-203 299-311 (346)
8 3bz1_X Photosystem II PSBX pro 8.6 1.5E+02 0.0052 19.0 1.5 20 184-205 13-32 (50)
9 2l2t_A Receptor tyrosine-prote 8.6 1.1E+02 0.0037 19.1 0.8 14 195-208 14-27 (44)
10 2rdc_A Uncharacterized protein 7.8 2.8E+02 0.0097 21.5 3.0 29 192-220 28-56 (153)
No 1
>3cx5_I Cytochrome B-C1 complex subunit 9; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.14.1 PDB: 3cxh_I* 2ibz_I* 1kyo_I* 1ezv_I* 1kb9_I* 1p84_I*
Probab=31.07 E-value=31 Score=23.42 Aligned_cols=28 Identities=21% Similarity=0.351 Sum_probs=21.3
Q ss_pred HhhhhcceeehhHHHHHHHHHHHHHhhh
Q 027071 194 VCAIIGGVFTVAGILDAILHNTMRLMKK 221 (228)
Q Consensus 194 lcAIIGGvftv~gliD~~i~~~~~~~kk 221 (228)
+.+|++|.|+.-..+|......-..++|
T Consensus 17 ~~~I~~gaf~fE~~fd~~~d~iw~~~Nk 44 (65)
T 3cx5_I 17 VGTIFAGAFVFQTVFDTAITSWYENHNK 44 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhccC
Confidence 6688888888888888887776666654
No 2
>1pp9_J Ubiquinol-cytochrome C reductase complex 7.2 kDa; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.14.1 PDB: 1bgy_J* 1be3_J* 1l0n_J* 1ntk_J* 1ntm_J* 1ntz_J* 1nu1_J* 1l0l_J* 1ppj_J* 1sqb_J* 1sqp_J* 1sqq_J* 1sqv_J* 1sqx_J* 2a06_J* 2fyu_J* 2ybb_J* 1bcc_J* 2bcc_J* 3bcc_J* ...
Probab=23.25 E-value=60 Score=21.76 Aligned_cols=29 Identities=10% Similarity=0.092 Sum_probs=21.7
Q ss_pred hHhhhhcceeehhHHHHHHHHHHHHHhhh
Q 027071 193 NVCAIIGGVFTVAGILDAILHNTMRLMKK 221 (228)
Q Consensus 193 ~lcAIIGGvftv~gliD~~i~~~~~~~kk 221 (228)
=+.+|++|.|+.=..+|......-..++|
T Consensus 20 y~~~i~~gaf~fe~~~d~~~d~iw~~~Nk 48 (62)
T 1pp9_J 20 FALTIVVGALFFERAFDQGADAIYEHINE 48 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhccC
Confidence 46688888888888888887776666654
No 3
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=12.36 E-value=1.4e+02 Score=18.21 Aligned_cols=26 Identities=15% Similarity=0.287 Sum_probs=16.2
Q ss_pred chhHHHHHhHhhhhcceeehhHHHHHHHH
Q 027071 185 KSFSHFITNVCAIIGGVFTVAGILDAILH 213 (228)
Q Consensus 185 ~sf~~Flt~lcAIIGGvftv~gliD~~i~ 213 (228)
.|+..||.++.| ||+..++ +.-.+++
T Consensus 4 pSL~nFl~Sl~a--G~vvvv~-i~~ali~ 29 (39)
T 3arc_X 4 PSLKGFFIGLLS--GAVVLGL-TFAVLIA 29 (39)
T ss_dssp HHHHHHHHHHHH--HHHHHHH-HHHHHHH
T ss_pred hhHHHHHHHHHH--HHHHHHH-HHHHhee
Confidence 678889998854 6665555 4333333
No 4
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=10.97 E-value=1.6e+02 Score=18.25 Aligned_cols=25 Identities=24% Similarity=0.535 Sum_probs=14.1
Q ss_pred hhHHHHHhHhhhhcceeehhHHHHHHHHH
Q 027071 186 SFSHFITNVCAIIGGVFTVAGILDAILHN 214 (228)
Q Consensus 186 sf~~Flt~lcAIIGGvftv~gliD~~i~~ 214 (228)
++.-.++...+| ++|+|+|-+++.+
T Consensus 21 si~~~IVGaLvi----l~VAGLiysm~RK 45 (46)
T 1pfi_A 21 AIGGYIVGALVI----LAVAGLIYSMLRK 45 (46)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHhc
Confidence 344444444443 4678887776653
No 5
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=10.91 E-value=79 Score=19.68 Aligned_cols=14 Identities=7% Similarity=0.344 Sum_probs=9.5
Q ss_pred hhhhcceeehhHHH
Q 027071 195 CAIIGGVFTVAGIL 208 (228)
Q Consensus 195 cAIIGGvftv~gli 208 (228)
.++|||++.++-++
T Consensus 15 ~gVVgGv~~~~ii~ 28 (44)
T 2ks1_B 15 TGMVGALLLLLVVA 28 (44)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHH
Confidence 46777777766555
No 6
>3lti_A DNA-directed RNA polymerase subunit beta; BBM2, nucleotidyltransferase, transcription, transferase; HET: MLY MSE; 1.60A {Escherichia coli} PDB: 3e7h_A
Probab=9.59 E-value=1.1e+02 Score=26.60 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=11.6
Q ss_pred eEEEEEeccc---eEEEEEeec-chhHHHH
Q 027071 166 AAKFHFELSP---MQVVITEDP-KSFSHFI 191 (228)
Q Consensus 166 gIfF~Yd~SP---i~V~~~e~r-~sf~~Fl 191 (228)
|-|+-|++.+ +-|.+...| .|..-||
T Consensus 34 GsWlefe~d~~d~~~vrIdr~rK~p~t~lL 63 (296)
T 3lti_A 34 GSWLDFEFDPKDNLFVRIDRRRKLPATIIL 63 (296)
T ss_dssp SCCEEEEECTTSCEEEEETTCCCEETHHHH
T ss_pred CceEEEEEcCCCeEEEEEcCcccchHHHHH
Confidence 4445555544 445554333 3434333
No 7
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=8.62 E-value=61 Score=28.37 Aligned_cols=13 Identities=38% Similarity=1.142 Sum_probs=10.1
Q ss_pred HHhHhhhhcceee
Q 027071 191 ITNVCAIIGGVFT 203 (228)
Q Consensus 191 lt~lcAIIGGvft 203 (228)
|..+||||||+.+
T Consensus 299 l~pv~AiiGGi~a 311 (346)
T 1y8q_A 299 MAPVCAVVGGILA 311 (346)
T ss_dssp CHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHH
Confidence 6778888888754
No 8
>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*
Probab=8.61 E-value=1.5e+02 Score=18.97 Aligned_cols=20 Identities=20% Similarity=0.275 Sum_probs=14.3
Q ss_pred cchhHHHHHhHhhhhcceeehh
Q 027071 184 PKSFSHFITNVCAIIGGVFTVA 205 (228)
Q Consensus 184 r~sf~~Flt~lcAIIGGvftv~ 205 (228)
..|+..||.++.| ||+..++
T Consensus 13 TpSL~NFl~Slva--G~vVvv~ 32 (50)
T 3bz1_X 13 TPSLKGFFIGLLS--GAVVLGL 32 (50)
T ss_dssp CHHHHHHHHHHHH--HHHHHHH
T ss_pred CHHHHHHHHHHHH--HHHHHHH
Confidence 3688999998854 6665555
No 9
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=8.60 E-value=1.1e+02 Score=19.07 Aligned_cols=14 Identities=29% Similarity=0.610 Sum_probs=9.3
Q ss_pred hhhhcceeehhHHH
Q 027071 195 CAIIGGVFTVAGIL 208 (228)
Q Consensus 195 cAIIGGvftv~gli 208 (228)
.++|||++.++-++
T Consensus 14 ~gVVgGv~~v~ii~ 27 (44)
T 2l2t_A 14 AGVIGGLFILVIVG 27 (44)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred EeehHHHHHHHHHH
Confidence 46777777766555
No 10
>2rdc_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Geobacter sulfurreducens pca}
Probab=7.80 E-value=2.8e+02 Score=21.55 Aligned_cols=29 Identities=21% Similarity=0.310 Sum_probs=24.2
Q ss_pred HhHhhhhcceeehhHHHHHHHHHHHHHhh
Q 027071 192 TNVCAIIGGVFTVAGILDAILHNTMRLMK 220 (228)
Q Consensus 192 t~lcAIIGGvftv~gliD~~i~~~~~~~k 220 (228)
-.+|++|++==.++.+|..++.++-+.+.
T Consensus 28 k~v~s~~~~D~v~l~iiE~lids~~~Y~~ 56 (153)
T 2rdc_A 28 KKVIEITGHDEVAAKLLEGLIDAGTRYFS 56 (153)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 45999999988899999999988776654
Done!