Query 027071
Match_columns 228
No_of_seqs 103 out of 522
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 07:00:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027071.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027071hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3cx5i1 f.23.14.1 (I:4-58) Sub 28.2 18 0.0013 22.2 2.4 28 194-221 15-42 (55)
2 d1ppjw_ f.23.14.1 (W:) Subunit 22.5 30 0.0022 21.7 2.7 29 193-221 20-48 (62)
3 d1vg0a1 c.3.1.3 (A:3-444,A:558 8.6 68 0.005 27.7 2.0 27 185-211 376-402 (491)
4 d1a04a2 c.23.1.1 (A:5-142) Nit 6.8 1.5E+02 0.011 19.9 2.8 31 174-204 1-31 (138)
5 d1edza1 c.2.1.7 (A:149-319) Me 6.6 81 0.0059 23.1 1.3 23 197-224 146-168 (171)
6 d1aym1_ b.121.4.1 (1:) Rhinovi 5.6 3.5E+02 0.026 21.3 4.8 49 128-180 122-181 (285)
7 d1l9la_ a.64.1.1 (A:) Granulys 5.4 2.1E+02 0.015 17.2 2.7 35 185-219 24-60 (74)
8 d1mjia_ d.77.1.1 (A:) Ribosoma 5.0 2E+02 0.014 21.1 2.7 25 174-198 84-108 (180)
9 d1iq4a_ d.77.1.1 (A:) Ribosoma 4.9 1.9E+02 0.014 21.1 2.6 25 174-198 83-107 (179)
10 d1vqod1 d.77.1.1 (D:10-174) Ri 4.7 2E+02 0.014 20.9 2.5 26 174-199 58-83 (165)
No 1
>d3cx5i1 f.23.14.1 (I:4-58) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=28.16 E-value=18 Score=22.23 Aligned_cols=28 Identities=21% Similarity=0.351 Sum_probs=21.2
Q ss_pred HhhhhcceeehhHHHHHHHHHHHHHhhh
Q 027071 194 VCAIIGGVFTVAGILDAILHNTMRLMKK 221 (228)
Q Consensus 194 lcAIIGGvftv~gliD~~i~~~~~~~kk 221 (228)
+.+|++|.|+.=..+|......-...+|
T Consensus 15 ~~tI~~gAf~fe~~fD~~~d~~we~~Nk 42 (55)
T d3cx5i1 15 VGTIFAGAFVFQTVFDTAITSWYENHNK 42 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 5688888888888888877766666554
No 2
>d1ppjw_ f.23.14.1 (W:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=22.47 E-value=30 Score=21.69 Aligned_cols=29 Identities=10% Similarity=0.092 Sum_probs=21.1
Q ss_pred hHhhhhcceeehhHHHHHHHHHHHHHhhh
Q 027071 193 NVCAIIGGVFTVAGILDAILHNTMRLMKK 221 (228)
Q Consensus 193 ~lcAIIGGvftv~gliD~~i~~~~~~~kk 221 (228)
=+.+|++|.|+.=..+|......-...+|
T Consensus 20 f~~tI~~gAf~fE~~fD~~~d~iwe~~Nk 48 (62)
T d1ppjw_ 20 FALTIVVGALFFERAFDQGADAIYEHINE 48 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 36678888888888888777766655544
No 3
>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=8.60 E-value=68 Score=27.68 Aligned_cols=27 Identities=15% Similarity=0.583 Sum_probs=20.6
Q ss_pred chhHHHHHhHhhhhcceeehhHHHHHH
Q 027071 185 KSFSHFITNVCAIIGGVFTVAGILDAI 211 (228)
Q Consensus 185 ~sf~~Flt~lcAIIGGvftv~gliD~~ 211 (228)
--+-+=.-|+||+-||+|.+-.-|+.+
T Consensus 376 gEipQ~FcR~~AV~Gg~Y~L~~~i~~i 402 (491)
T d1vg0a1 376 GELPQCFCRMCAVFGGIYCLRHSVQCL 402 (491)
T ss_dssp THHHHHHHHHHHHTTCEEESSCCEEEE
T ss_pred chHHHHHHHHHHhcCcEEEcCCccceE
Confidence 466778889999999999975544433
No 4
>d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]}
Probab=6.79 E-value=1.5e+02 Score=19.87 Aligned_cols=31 Identities=10% Similarity=0.270 Sum_probs=26.2
Q ss_pred cceEEEEEeecchhHHHHHhHhhhhcceeeh
Q 027071 174 SPMQVVITEDPKSFSHFITNVCAIIGGVFTV 204 (228)
Q Consensus 174 SPi~V~~~e~r~sf~~Flt~lcAIIGGvftv 204 (228)
.||+|.+-++...+..-+.++..-.|++..|
T Consensus 1 ePi~VLiVDD~~~~r~~l~~~L~~~~~~~~v 31 (138)
T d1a04a2 1 EPATILLIDDHPMLRTGVKQLISMAPDITVV 31 (138)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTCTTEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCCCcEEE
Confidence 5999999999988888888888877877665
No 5
>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.64 E-value=81 Score=23.10 Aligned_cols=23 Identities=43% Similarity=0.758 Sum_probs=13.8
Q ss_pred hhcceeehhHHHHHHHHHHHHHhhhhhc
Q 027071 197 IIGGVFTVAGILDAILHNTMRLMKKVEI 224 (228)
Q Consensus 197 IIGGvftv~gliD~~i~~~~~~~kk~~~ 224 (228)
+.||| |++-|+ .+.+++.++..+
T Consensus 146 VPGGV-TvamLl----~N~v~a~~~~~~ 168 (171)
T d1edza1 146 MTGKV-TIAMLL----RNMLRLVRNVEL 168 (171)
T ss_dssp CCHHH-HHHHHH----HHHHHHHHHHHH
T ss_pred CCCHH-HHHHHH----HHHHHHHHHHHh
Confidence 46998 777764 555555544443
No 6
>d1aym1_ b.121.4.1 (1:) Rhinovirus coat proteins {Human rhinovirus 16, (HRV-16) [TaxId: 31708]}
Probab=5.58 E-value=3.5e+02 Score=21.26 Aligned_cols=49 Identities=8% Similarity=-0.046 Sum_probs=30.7
Q ss_pred EEEEEEEEEecccccccceeeeeEEE----------ee-eecccCCCCCeEEEEEeccceEEEE
Q 027071 128 LQIVKTEVITRRYSREHSLLEEYEYT----------AH-SSLVQSIYIPAAKFHFELSPMQVVI 180 (228)
Q Consensus 128 lkvVPT~y~~~~~~~~~~~~~tyQYT----------~~-~~~~~~~~~PgIfF~Yd~SPi~V~~ 180 (228)
+.+|||.....+... .-+|||- .. +-.+++...|.||++..=.|-.+.+
T Consensus 122 vT~V~T~~~~~~~~~----~l~~QiMYvPPGap~P~~~ds~~Wqs~tNPSvf~~~g~~p~r~sI 181 (285)
T d1aym1_ 122 ITMVPSVAAKDGHIG----HIVMQYMYVPPGAPIPTTRDDYAWQSGTNASVFWQHGQPFPRFSL 181 (285)
T ss_dssp EEEEEEEEESSSCCC----CCEEEEEEECTTSCCCSSTTCGGGGCSSSEEEEEETTSCCCEEEE
T ss_pred EEEEEeeccCCCCcC----cEEEeeeccCCCCCCCCcccCccccCCCCCeEEEcCCCcCceEee
Confidence 778998765433222 2456661 11 1123567789999999888887765
No 7
>d1l9la_ a.64.1.1 (A:) Granulysin, NKG5 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.40 E-value=2.1e+02 Score=17.15 Aligned_cols=35 Identities=14% Similarity=0.204 Sum_probs=27.9
Q ss_pred chhHHHHHhHhhhhccee--ehhHHHHHHHHHHHHHh
Q 027071 185 KSFSHFITNVCAIIGGVF--TVAGILDAILHNTMRLM 219 (228)
Q Consensus 185 ~sf~~Flt~lcAIIGGvf--tv~gliD~~i~~~~~~~ 219 (228)
..+.++|.++|..+++-+ .+-.++|......+..+
T Consensus 24 ~~I~~~l~~~C~~lp~~~~~~C~~lv~~Y~~~ii~~l 60 (74)
T d1l9la_ 24 RSVSNAATRVCRTGRSRWRDVCRNFMRRYQSRVIQGL 60 (74)
T ss_dssp HHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999854 56788888777777665
No 8
>d1mjia_ d.77.1.1 (A:) Ribosomal protein L5 {Thermus thermophilus [TaxId: 274]}
Probab=4.98 E-value=2e+02 Score=21.07 Aligned_cols=25 Identities=12% Similarity=0.246 Sum_probs=22.3
Q ss_pred cceEEEEEeecchhHHHHHhHhhhh
Q 027071 174 SPMQVVITEDPKSFSHFITNVCAII 198 (228)
Q Consensus 174 SPi~V~~~e~r~sf~~Flt~lcAII 198 (228)
.|+.++++-.....+.||-+++.++
T Consensus 84 ~piG~kvTLRg~~m~~FL~rli~i~ 108 (180)
T d1mjia_ 84 MPIGLRVTLRRDRMWIFLEKLLNVA 108 (180)
T ss_dssp SEEEEEEEECHHHHHHHHHHHHHTT
T ss_pred CceeEEEeecHHHHHHHHHHHHHHH
Confidence 5899999999999999999998774
No 9
>d1iq4a_ d.77.1.1 (A:) Ribosomal protein L5 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=4.95 E-value=1.9e+02 Score=21.08 Aligned_cols=25 Identities=12% Similarity=0.292 Sum_probs=22.1
Q ss_pred cceEEEEEeecchhHHHHHhHhhhh
Q 027071 174 SPMQVVITEDPKSFSHFITNVCAII 198 (228)
Q Consensus 174 SPi~V~~~e~r~sf~~Flt~lcAII 198 (228)
.|+.++++-....-+.||-+++-|+
T Consensus 83 ~piG~kVTLRg~~m~~FL~rli~iv 107 (179)
T d1iq4a_ 83 MPIGAKVTLRGERMYEFLDKLISVS 107 (179)
T ss_dssp CEEEEEEEECHHHHHHHHHHHHHTT
T ss_pred ceeEEEeeeccchHHHHHHHHHHhc
Confidence 4889999999999999999998875
No 10
>d1vqod1 d.77.1.1 (D:10-174) Ribosomal protein L5 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=4.74 E-value=2e+02 Score=20.87 Aligned_cols=26 Identities=12% Similarity=0.236 Sum_probs=22.7
Q ss_pred cceEEEEEeecchhHHHHHhHhhhhc
Q 027071 174 SPMQVVITEDPKSFSHFITNVCAIIG 199 (228)
Q Consensus 174 SPi~V~~~e~r~sf~~Flt~lcAIIG 199 (228)
.||.+.++-.....++||-++..+++
T Consensus 58 ~piG~kVTLRg~~m~~FL~rll~~~~ 83 (165)
T d1vqod1 58 DPIGAKVTLRDEMAEEFLQTALPLAE 83 (165)
T ss_dssp SEEEEEEEECTHHHHHHHHTTGGGSC
T ss_pred CeEEEEEEEechhHHHHHHHHhcccc
Confidence 48889999888899999999998875
Done!