BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027072
(228 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BKQ|A Chain A, Nedd8 Protease
pdb|2BKQ|B Chain B, Nedd8 Protease
pdb|2BKQ|C Chain C, Nedd8 Protease
pdb|2BKQ|D Chain D, Nedd8 Protease
pdb|2BKR|A Chain A, Nedd8 Nedp1 Complex
Length = 212
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 120/226 (53%), Gaps = 20/226 (8%)
Query: 7 DDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLV---SQDILLVPPSIAFW 63
D +LSY D +LR+SD+ +L P +LND II F F Y ++ S + + P + +
Sbjct: 2 DPVVLSYMDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDSSDHVSFISPEVTQF 61
Query: 64 ILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHD 123
I + + F+EPL LP K++V +NDN + A GGSHWSL+VY ++ N F H+D
Sbjct: 62 IKCTSNPAEIAMFLEPLDLPNKRVVFLAINDNSNQ--AAGGSHWSLLVYLQDKNSFFHYD 119
Query: 124 SNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVD--SPQQTNGYDCGVYVIAIARAI 181
S+ R N + A+++ + F+G G L V+ +P Q N YDCG+YVI A+
Sbjct: 120 SHSRSNSVHAKQVAEKLEAFLG-----RKGDKLAFVEEKAPAQQNSYDCGMYVICNTEAL 174
Query: 182 CCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKGLMEK 227
C ++ + E + + +T +++ R E LI L +K
Sbjct: 175 C---QNFFRQQTESLL-----QLLTPAYITKKRGEWKDLIATLAKK 212
>pdb|1XT9|A Chain A, Crystal Structure Of Den1 In Complex With Nedd8
Length = 212
Score = 124 bits (311), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 120/226 (53%), Gaps = 20/226 (8%)
Query: 7 DDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLV---SQDILLVPPSIAFW 63
D +LSY D +LR+SD+ +L P +LND II F F Y ++ S + + P + +
Sbjct: 2 DPVVLSYMDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDCSDHVSFISPEVTQF 61
Query: 64 ILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHD 123
I + + F+EPL LP K++V +NDN + A GG+HWSL+VY ++ N F H+D
Sbjct: 62 IKCTSNPAEIAMFLEPLDLPNKRVVFLAINDNSNQ--AAGGTHWSLLVYLQDKNSFFHYD 119
Query: 124 SNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVD--SPQQTNGYDCGVYVIAIARAI 181
S+ R N + A+++ + F+G G L V+ +P Q N YDCG+YVI A+
Sbjct: 120 SHSRSNSVHAKQVAEKLEAFLG-----RKGDKLAFVEEKAPAQQNSYDCGMYVICNTEAL 174
Query: 182 CCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKGLMEK 227
C ++ + E + + +T +++ R E LI L +K
Sbjct: 175 C---QNFFRQQTESLL-----QLLTPAYITKKRGEWKDLITTLAKK 212
>pdb|1EUV|A Chain A, X-Ray Structure Of The C-Terminal Ulp1 Protease Domain In
Complex With Smt3, The Yeast Ortholog Of Sumo
Length = 221
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 82/180 (45%), Gaps = 25/180 (13%)
Query: 4 SAADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSIAF- 62
S + ++++ +++ + D L+ +LND IIEF+ Y+ P ++AF
Sbjct: 21 SRENTQLMNRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKS--------TPNTVAFN 72
Query: 63 --WILNCPDATY--LKEFIEPLKLPEKKL--VIFPVNDNDDMSLAEGGSHWSLIVYERNG 116
+ N + Y ++ +++ K KL + P+N N SHW+L + +
Sbjct: 73 SFFYTNLSERGYQGVRRWMKRKKTQIDKLDKIFTPINLNQ--------SHWALGIIDLKK 124
Query: 117 NVFVHHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCV--DSPQQTNGYDCGVYV 174
+ DS + + + + ++ + + + G+ D + D PQQ NGYDCG+YV
Sbjct: 125 KTIGYVDSLSNGPNAMSFAILTDLQKYVMEESKHTIGEDFDLIHLDCPQQPNGYDCGIYV 184
>pdb|1TGZ|A Chain A, Structure Of Human Senp2 In Complex With Sumo-1
pdb|1TH0|A Chain A, Structure Of Human Senp2
pdb|1TH0|B Chain B, Structure Of Human Senp2
Length = 226
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/193 (20%), Positives = 79/193 (40%), Gaps = 25/193 (12%)
Query: 1 MGKSAADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSI 60
+G D+ + S + + R D+ L ++LND +I FY + L Q +
Sbjct: 17 LGHGPQDEILSSAFKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPALHVFS 76
Query: 61 AFWILNCPDATY--LKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNV 118
F+ Y +K + + + L E+++++ P++ HWSL+V +
Sbjct: 77 TFFYPKLKSGGYQAVKRWTKGVNLFEQEIILVPIHRK---------VHWSLVVIDLRKKC 127
Query: 119 FVHHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCV----------DSPQQTNGY 168
+ DS + K ++ ++ ++ D + L+ + + PQQ NG
Sbjct: 128 LKYLDSMGQ----KGHRICEILLQYLQDESKTKRNSDLNLLEWTHHSMKPHEIPQQLNGS 183
Query: 169 DCGVYVIAIARAI 181
DCG++ A I
Sbjct: 184 DCGMFTCKYADYI 196
>pdb|2HKP|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
A Sulfenic Acid
pdb|2HL8|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
A Sulfinic Acid
pdb|2HL9|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
A Sulfonic Acid
Length = 221
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 81/180 (45%), Gaps = 25/180 (13%)
Query: 4 SAADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSIAF- 62
S + ++++ +++ + D L+ +LND IIEF+ Y+ P ++AF
Sbjct: 21 SRENTQLMNRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKS--------TPNTVAFN 72
Query: 63 --WILNCPDATY--LKEFIEPLKLPEKKL--VIFPVNDNDDMSLAEGGSHWSLIVYERNG 116
+ N + Y ++ +++ K KL + P+N N SHW+L + +
Sbjct: 73 SFFYTNLSERGYQGVRRWMKRKKTQIDKLDKIFTPINLNQ--------SHWALGIIDLKK 124
Query: 117 NVFVHHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCV--DSPQQTNGYDCGVYV 174
+ DS + + + + ++ + + + G+ D + D PQQ NGYD G+YV
Sbjct: 125 KTIGYVDSLSNGPNAMSFAILTDLQKYVMEESKHTIGEDFDLIHLDCPQQPNGYDXGIYV 184
>pdb|2CKG|A Chain A, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A
Structural Basis For Discrimination Between Sumo
Paralogues During Processing
pdb|2CKG|B Chain B, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A
Structural Basis For Discrimination Between Sumo
Paralogues During Processing
pdb|2CKH|A Chain A, Senp1-sumo2 Complex
Length = 225
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 76/187 (40%), Gaps = 17/187 (9%)
Query: 3 KSAADDKILSYN-DVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSIA 61
++ D++LS + + R D+ L+ +LND II FY + L + + V
Sbjct: 18 RNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSVHAFNT 77
Query: 62 FWILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLA--EGGSHWSLIVYERNGNVF 119
F+ A Y + +K KK+ +F V D+ L G HW L V +
Sbjct: 78 FFFTKLKTAGY-----QAVKRWTKKVDVFSV----DILLVPIHLGVHWCLAVVDFRKKNI 128
Query: 120 VHHDSNHRMNKIKARKLFSAVVGFMGDSTSA---SNGKYLDCVDS--PQQTNGYDCGVYV 174
++DS +N R L + D +NG L S PQQ NG DCG++
Sbjct: 129 TYYDSMGGINNEACRILLQYLKQESIDKKRKEFDTNGWQLFSKKSQIPQQMNGSDCGMFA 188
Query: 175 IAIARAI 181
A I
Sbjct: 189 CKYADCI 195
>pdb|2XRE|A Chain A, Detection Of Cobalt In Previously Unassigned Human Senp1
Structure
pdb|2XRE|B Chain B, Detection Of Cobalt In Previously Unassigned Human Senp1
Structure
Length = 230
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 76/188 (40%), Gaps = 18/188 (9%)
Query: 3 KSAADDKILSYN-DVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSIA 61
++ D++LS + + R D+ L+ +LND II FY + L + + V
Sbjct: 22 RNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSVHAFNT 81
Query: 62 FWILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLA--EGGSHWSLIVYERNGNVF 119
F+ A Y + +K KK+ +F V D+ L G HW L V +
Sbjct: 82 FFFTKLKTAGY-----QAVKRWTKKVDVFSV----DILLVPIHLGVHWCLAVVDFRKKNI 132
Query: 120 VHHDSNHRMNKIKARKLFSAVVGFMGDSTSA---SNGKYLDCVDS---PQQTNGYDCGVY 173
++DS +N R L + D +NG L S PQQ NG DCG++
Sbjct: 133 TYYDSMGGINNEACRILLQYLKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDCGMF 192
Query: 174 VIAIARAI 181
A I
Sbjct: 193 ACKYADCI 200
>pdb|2IYC|A Chain A, Senp1 Native Structure
pdb|2IYC|B Chain B, Senp1 Native Structure
pdb|2IYD|A Chain A, Senp1 Covalent Complex With Sumo-2
Length = 226
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 76/188 (40%), Gaps = 18/188 (9%)
Query: 3 KSAADDKILSYN-DVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSIA 61
++ D++LS + + R D+ L+ +LND II FY + L + + V
Sbjct: 18 RNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSVHAFNT 77
Query: 62 FWILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLA--EGGSHWSLIVYERNGNVF 119
F+ A Y + +K KK+ +F V D+ L G HW L V +
Sbjct: 78 FFFTKLKTAGY-----QAVKRWTKKVDVFSV----DILLVPIHLGVHWCLAVVDFRKKNI 128
Query: 120 VHHDSNHRMNKIKARKLFSAVVGFMGDSTSA---SNGKYLDCVDS---PQQTNGYDCGVY 173
++DS +N R L + D +NG L S PQQ NG DCG++
Sbjct: 129 TYYDSMGGINNEACRILLQYLKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDCGMF 188
Query: 174 VIAIARAI 181
A I
Sbjct: 189 ACKYADCI 196
>pdb|2XPH|A Chain A, Crystal Structure Of Human Senp1 With The Bound Cobalt
pdb|2XPH|B Chain B, Crystal Structure Of Human Senp1 With The Bound Cobalt
Length = 238
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 76/188 (40%), Gaps = 18/188 (9%)
Query: 3 KSAADDKILSYN-DVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSIA 61
++ D++LS + + R D+ L+ +LND II FY + L + + V
Sbjct: 30 RNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSVHAFNT 89
Query: 62 FWILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLA--EGGSHWSLIVYERNGNVF 119
F+ A Y + +K KK+ +F V D+ L G HW L V +
Sbjct: 90 FFFTKLKTAGY-----QAVKRWTKKVDVFSV----DILLVPIHLGVHWCLAVVDFRKKNI 140
Query: 120 VHHDSNHRMNKIKARKLFSAVVGFMGDSTSA---SNGKYLDCVDS---PQQTNGYDCGVY 173
++DS +N R L + D +NG L S PQQ NG DCG++
Sbjct: 141 TYYDSMGGINNEACRILLQYLKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDCGMF 200
Query: 174 VIAIARAI 181
A I
Sbjct: 201 ACKYADCI 208
>pdb|2IO0|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-2
pdb|2IO1|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO1|C Chain C, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO1|E Chain E, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO2|A Chain A, Crystal Structure Of Human Senp2 In Complex With
Rangap1-sumo-1
pdb|2IO3|A Chain A, Crystal Structure Of Human Senp2 In Complex With Rangap1-
Sumo-2
Length = 232
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/193 (20%), Positives = 78/193 (40%), Gaps = 25/193 (12%)
Query: 1 MGKSAADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSI 60
+G D+ + S + + R D+ L ++LND +I FY + L Q +
Sbjct: 23 LGHGPQDEILSSAFKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPALHVFS 82
Query: 61 AFWILNCPDATY--LKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNV 118
F+ Y +K + + + L E+++++ P++ HWSL+V +
Sbjct: 83 TFFYPKLKSGGYQAVKRWTKGVNLFEQEIILVPIHRK---------VHWSLVVIDLRKKC 133
Query: 119 FVHHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCV----------DSPQQTNGY 168
+ DS + K ++ ++ ++ D + L+ + + PQQ NG
Sbjct: 134 LKYLDSMGQ----KGHRICEILLQYLQDESKTKRNSDLNLLEWTHHSMKPHEIPQQLNGS 189
Query: 169 DCGVYVIAIARAI 181
D G++ A I
Sbjct: 190 DSGMFTCKYADYI 202
>pdb|2IY0|A Chain A, Senp1 (Mutant) Sumo1 Rangap
pdb|2IY1|A Chain A, Senp1 (Mutant) Full Length Sumo1
pdb|2IY1|C Chain C, Senp1 (Mutant) Full Length Sumo1
Length = 226
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 75/188 (39%), Gaps = 18/188 (9%)
Query: 3 KSAADDKILSYN-DVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSIA 61
++ D++LS + + R D+ L+ +LND II FY + L + + V
Sbjct: 18 RNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSVHAFNT 77
Query: 62 FWILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLA--EGGSHWSLIVYERNGNVF 119
F+ A Y + +K KK+ +F V D+ L G HW L V +
Sbjct: 78 FFFTKLKTAGY-----QAVKRWTKKVDVFSV----DILLVPIHLGVHWCLAVVDFRKKNI 128
Query: 120 VHHDSNHRMNKIKARKLFSAVVGFMGDSTSA---SNGKYLDCVDS---PQQTNGYDCGVY 173
++DS +N R L + D +NG L S PQQ NG D G++
Sbjct: 129 TYYDSMGGINNEACRILLQYLKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDAGMF 188
Query: 174 VIAIARAI 181
A I
Sbjct: 189 ACKYADCI 196
>pdb|2G4D|A Chain A, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
With Sumo-1
pdb|2G4D|C Chain C, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
With Sumo-1
Length = 205
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 68/174 (39%), Gaps = 17/174 (9%)
Query: 16 VVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSIAFWILNCPDATYLKE 75
+ + R D+ L+ +LND II FY + L + + V F+ A Y
Sbjct: 11 LTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSVHAFNTFFFTKLKTAGY--- 67
Query: 76 FIEPLKLPEKKLVIFPVNDNDDMSLA--EGGSHWSLIVYERNGNVFVHHDSNHRMNKIKA 133
+ +K KK+ +F V D+ L G HW L V + ++DS +N
Sbjct: 68 --QAVKRWTKKVDVFSV----DILLVPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEAC 121
Query: 134 RKLFSAVVGFMGDSTSA---SNGKYLDCVDS---PQQTNGYDCGVYVIAIARAI 181
R L + D +NG L S PQQ NG D G++ A I
Sbjct: 122 RILLQYLKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDSGMFACKYADCI 175
>pdb|3I4E|A Chain A, Crystal Structure Of Isocitrate Lyase From Burkholderia
Pseudomallei
pdb|3I4E|B Chain B, Crystal Structure Of Isocitrate Lyase From Burkholderia
Pseudomallei
pdb|3I4E|C Chain C, Crystal Structure Of Isocitrate Lyase From Burkholderia
Pseudomallei
pdb|3I4E|D Chain D, Crystal Structure Of Isocitrate Lyase From Burkholderia
Pseudomallei
Length = 439
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 21 SDLDILSGPYFLNDRIIEFYFSYLSSC--LVSQDILLVPPSIAFWI-LNCPDATYLKEFI 77
SD+D PY +R +E +F +S+ + P + W PD Y K+F
Sbjct: 244 SDIDDNDKPYLTGERTVEGFFRTKPGLEQAISRGLAYAPYADLIWCETGKPDLEYAKKFA 303
Query: 78 EPL--KLPEKKL 87
E + + P K L
Sbjct: 304 EAIHKQFPGKLL 315
>pdb|3EAY|A Chain A, Crystal Structure Of The Human Senp7 Catalytic Domain
Length = 323
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 22 DLDILSGPYFLNDRIIEFYFSYL 44
DL+ L FLND II+FY YL
Sbjct: 39 DLECLEEGEFLNDVIIDFYLKYL 61
>pdb|2OQC|A Chain A, Crystal Structure Of Penicillin V Acylase From Bacillus
Subtilis
pdb|2OQC|B Chain B, Crystal Structure Of Penicillin V Acylase From Bacillus
Subtilis
Length = 327
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 11/72 (15%)
Query: 70 ATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGG----------SHWSLIVYERNGNVF 119
A YLKE +EP E K V +M++ +G + ++ ++ GN +
Sbjct: 230 AVYLKEHLEPAA-DETKGVTAAFQILANMTIPKGAVITEEDEIHYTQYTSVMCNETGNYY 288
Query: 120 VHHDSNHRMNKI 131
HH N ++ K+
Sbjct: 289 FHHYDNRQIQKV 300
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,918,812
Number of Sequences: 62578
Number of extensions: 283461
Number of successful extensions: 692
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 667
Number of HSP's gapped (non-prelim): 18
length of query: 228
length of database: 14,973,337
effective HSP length: 95
effective length of query: 133
effective length of database: 9,028,427
effective search space: 1200780791
effective search space used: 1200780791
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)