BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027072
(228 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LSS7|RUBP1_ARATH NEDD8-specific protease 1 OS=Arabidopsis thaliana GN=NEDP1 PE=2
SV=1
Length = 226
Score = 265 bits (677), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 127/227 (55%), Positives = 165/227 (72%), Gaps = 5/227 (2%)
Query: 1 MGKSAADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSI 60
MG ++ DDKILSY DVVLRRSDLDIL+GP FLNDR+IEFY S+LS+ S I L+PPSI
Sbjct: 1 MGNTSDDDKILSYEDVVLRRSDLDILNGPIFLNDRVIEFYLSFLSTVHSSTTISLIPPSI 60
Query: 61 AFWILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFV 120
AFWI NCPD YLK+F++PL L +K L+I PVNDN ++ +AEGG HWSL+VY + N FV
Sbjct: 61 AFWISNCPDTEYLKDFMKPLNLRDKDLLILPVNDNSNVEVAEGGLHWSLLVYYKEANTFV 120
Query: 121 HHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVDSPQQTNGYDCGVYVIAIARA 180
HHDS +N+ A++LF AV F+ S + Y +C D+PQQ NGYDCGV+++A AR
Sbjct: 121 HHDSYMGVNRWSAKQLFKAVSPFV----SNGDASYKECTDTPQQKNGYDCGVFLLATARV 176
Query: 181 ICCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKGLMEK 227
IC W+ S K+ + +WF+ VKE V +V+ +R+EIL LIK LM +
Sbjct: 177 ICEWFSSGGMKNRDELWFANVKETVPD-LVNHLREEILALIKKLMSE 222
>sp|Q5FVJ8|SENP8_RAT Sentrin-specific protease 8 OS=Rattus norvegicus GN=Senp8 PE=2 SV=1
Length = 217
Score = 127 bits (318), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 120/226 (53%), Gaps = 20/226 (8%)
Query: 7 DDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCL---VSQDILLVPPSIAFW 63
D +LSY D +LR+SD+ +L P +LND II F F Y +S S + + P + +
Sbjct: 2 DPVVLSYMDSLLRQSDVSLLDPPNWLNDHIIGFAFEYFASSQFHDCSDHVCFISPEVTQF 61
Query: 64 ILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHD 123
I + F+EPL LP K++V +NDN + A GG+HWSL+VY ++ N F H+D
Sbjct: 62 IKCTSSPAEIAMFLEPLDLPHKRVVFLAINDNSNQ--AAGGTHWSLLVYLQDKNSFFHYD 119
Query: 124 SNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVD--SPQQTNGYDCGVYVIAIARAI 181
S+ R N I A+++ + F+G S G L V+ +P Q N YDCG+YVI A+
Sbjct: 120 SHSRSNSIHAKQVAEKLKAFLG-----SKGDKLVFVEEKAPAQQNSYDCGMYVICNTEAL 174
Query: 182 CCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKGLMEK 227
C ++ + E + +T T +++ R E LI L +K
Sbjct: 175 C---QNLFRRQPESPL-----QLLTPTYITKKRGEWKDLIARLAKK 212
>sp|Q9D2Z4|SENP8_MOUSE Sentrin-specific protease 8 OS=Mus musculus GN=Senp8 PE=1 SV=2
Length = 221
Score = 127 bits (318), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 120/226 (53%), Gaps = 20/226 (8%)
Query: 7 DDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCL---VSQDILLVPPSIAFW 63
D +LSY D +LR+SD+ +L P +LND II F F Y ++ S + + P + +
Sbjct: 2 DPVVLSYMDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDCSDHVCFISPEVTQF 61
Query: 64 ILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHD 123
I + F+EPL LP K++V +NDN + A GG+HWSL+VY ++ N F H+D
Sbjct: 62 IKCTSSPAEIAMFLEPLDLPHKRVVFLAINDNSNQ--AAGGTHWSLLVYLQDKNSFFHYD 119
Query: 124 SNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVD--SPQQTNGYDCGVYVIAIARAI 181
S+ R N I A+++ + F+G S G L V+ +P Q N YDCG+YVI A+
Sbjct: 120 SHSRSNSIHAKQVAEKLKAFLG-----SKGDKLVFVEEKAPAQENSYDCGMYVICNTEAL 174
Query: 182 CCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKGLMEK 227
C +S + E + +T T +++ R E LI L +K
Sbjct: 175 C---QSLFRRQPESPL-----QLLTPTYITKKRGEWKDLIARLAKK 212
>sp|Q96LD8|SENP8_HUMAN Sentrin-specific protease 8 OS=Homo sapiens GN=SENP8 PE=1 SV=1
Length = 212
Score = 124 bits (311), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 120/226 (53%), Gaps = 20/226 (8%)
Query: 7 DDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLV---SQDILLVPPSIAFW 63
D +LSY D +LR+SD+ +L P +LND II F F Y ++ S + + P + +
Sbjct: 2 DPVVLSYMDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDCSDHVSFISPEVTQF 61
Query: 64 ILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHD 123
I + + F+EPL LP K++V +NDN + A GG+HWSL+VY ++ N F H+D
Sbjct: 62 IKCTSNPAEIAMFLEPLDLPNKRVVFLAINDNSNQ--AAGGTHWSLLVYLQDKNSFFHYD 119
Query: 124 SNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVD--SPQQTNGYDCGVYVIAIARAI 181
S+ R N + A+++ + F+G G L V+ +P Q N YDCG+YVI A+
Sbjct: 120 SHSRSNSVHAKQVAEKLEAFLG-----RKGDKLAFVEEKAPAQQNSYDCGMYVICNTEAL 174
Query: 182 CCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKGLMEK 227
C ++ + E + + +T +++ R E LI L +K
Sbjct: 175 C---QNFFRQQTESLL-----QLLTPAYITKKRGEWKDLITTLAKK 212
>sp|Q54XR2|SENP8_DICDI Probable sentrin-specific protease 8 OS=Dictyostelium discoideum
GN=senp8 PE=3 SV=1
Length = 243
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 103/187 (55%), Gaps = 14/187 (7%)
Query: 6 ADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYL------SSCLVSQDILLVPPS 59
+D I+SYND + +SD++IL +LND II FY +L + + +LL+ PS
Sbjct: 2 SDPLIVSYNDSAIYQSDINILKSNQWLNDSIISFYLEWLKDGGEDNKNKIPNQVLLLSPS 61
Query: 60 IAFWILNCPDATYLKE----FIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERN 115
+ F C +E F +PL L K+++ FP+ +N D ++ GG+HWSL+++ ++
Sbjct: 62 VVFC---CSFVESEQEIQLMFEQPLSLKTKEVIFFPLTNNRDPNVIGGGTHWSLLIFIKS 118
Query: 116 GNVFVHHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGK-YLDCVDSPQQTNGYDCGVYV 174
N F+++DS + N A + S + +N K +L +PQQ NGYDCG+YV
Sbjct: 119 LNKFIYYDSINSFNSSDAIFIISKFKFLLSSPPPKTNLKEFLINQKTPQQQNGYDCGLYV 178
Query: 175 IAIARAI 181
++I +
Sbjct: 179 LSIIEEL 185
>sp|O42980|NEP1_SCHPO NEDD8-specific protease 1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=nep1 PE=1 SV=2
Length = 420
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 75/175 (42%), Gaps = 12/175 (6%)
Query: 10 ILSYNDVVLRRSDLDILSGPYFLNDRIIEF------YFSYLSSCLVSQDILLVPPSIAFW 63
+L DV ++ D+D L P + D I++ + + S + +ILL+ PS+ F
Sbjct: 7 VLELFDVCFKQEDVDSLKKPNWFTDVSIDYVDELIEHLWFPSYPNQANEILLLRPSLVFL 66
Query: 64 ILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHD 123
+ + + P KL K + P+ND D + GGSHWSL+V ++D
Sbjct: 67 LAEAAISPEELKVALPKKLMNCKYLFMPINDLDKHAAGSGGSHWSLMVASIPDGQCYYYD 126
Query: 124 SNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVDSPQQTNGYDCGVYVIAIA 178
S R + V + ++C+ QQ NGYDCG +V A
Sbjct: 127 SLSNGKTKDCRSALARVSDLFKKKFT------IECMPVQQQRNGYDCGAHVCAFT 175
>sp|O13612|NEP2_SCHPO NEDD8-specific protease 2 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=nep2 PE=1 SV=1
Length = 415
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 101/224 (45%), Gaps = 24/224 (10%)
Query: 11 LSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLV-------SQDILLVPPSIAFW 63
L Y +V LR++D+D Y++ D I+F++ + ++ SQ I L+ P++ F+
Sbjct: 71 LEYFEVSLRKNDVDHFRPGYWILDTNIDFFYEIMLRQVLLKRPKEESQQIYLLRPAMVFF 130
Query: 64 ILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHD 123
+ P+ ++ + P + + P+ND ++ + E GSHWSL+V + ++D
Sbjct: 131 LAQAPNPLEIESALPPAMF-DASFIFLPINDTNECGI-ESGSHWSLLVVSVEKGLGWYYD 188
Query: 124 SNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVDSPQQTNGYDCGVYVIAIARAICC 183
S N + + + K +PQQ N DCG++V R +
Sbjct: 189 SMSNGNTNDCNLAIKNLGILLKKEFRVRHMK------TPQQINDCDCGLHVCENTRILM- 241
Query: 184 WYESSEHKDAEGMWFSFVKEQVTSTVVS--QMRKEILQLIKGLM 225
++ + + V + +VV ++RK ++++I L+
Sbjct: 242 ------YRLLQKPYVPKVDMNLDHSVVDSVRLRKALMEVITSLL 279
>sp|Q02724|ULP1_YEAST Ubiquitin-like-specific protease 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ULP1 PE=1 SV=1
Length = 621
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 82/180 (45%), Gaps = 25/180 (13%)
Query: 4 SAADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSIAF- 62
S + ++++ +++ + D L+ +LND IIEF+ Y+ P ++AF
Sbjct: 421 SRENTQLMNRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKS--------TPNTVAFN 472
Query: 63 --WILNCPDATY--LKEFIEPLKLPEKKL--VIFPVNDNDDMSLAEGGSHWSLIVYERNG 116
+ N + Y ++ +++ K KL + P+N N SHW+L + +
Sbjct: 473 SFFYTNLSERGYQGVRRWMKRKKTQIDKLDKIFTPINLNQ--------SHWALGIIDLKK 524
Query: 117 NVFVHHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCV--DSPQQTNGYDCGVYV 174
+ DS + + + + ++ + + + G+ D + D PQQ NGYDCG+YV
Sbjct: 525 KTIGYVDSLSNGPNAMSFAILTDLQKYVMEESKHTIGEDFDLIHLDCPQQPNGYDCGIYV 584
>sp|Q91ZX6|SENP2_MOUSE Sentrin-specific protease 2 OS=Mus musculus GN=Senp2 PE=1 SV=2
Length = 588
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 78/190 (41%), Gaps = 25/190 (13%)
Query: 1 MGKSAADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSI 60
+G D+ + S + + R D+ L ++LND +I FY + L Q +
Sbjct: 379 LGHGPPDEILSSAFKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERSKKQGYPALHAFS 438
Query: 61 AFWILNCPDATY--LKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNV 118
F+ Y +K + + + L E++LV+ P++ HWSL+V +
Sbjct: 439 TFFYPKLKSGGYQAVKRWTKGVNLFEQELVLVPIHRK---------VHWSLVVMDLRKKC 489
Query: 119 FVHHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCV----------DSPQQTNGY 168
+ DS + K ++ ++ ++ D + L+ + + PQQ NG
Sbjct: 490 LKYLDSMGQ----KGHRICEILLQYLQDESKTKRNTDLNLLEWTHYSMKPHEIPQQLNGS 545
Query: 169 DCGVYVIAIA 178
DCG++ A
Sbjct: 546 DCGMFTCKYA 555
>sp|Q94F30|ESD4_ARATH Ubiquitin-like-specific protease ESD4 OS=Arabidopsis thaliana
GN=ESD4 PE=1 SV=1
Length = 489
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 12/80 (15%)
Query: 104 GSHWSLIVYERNGNVFVHHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDC----- 158
G HW+L V + ++ DS + ++ + + +A+ +MGD + +GK +D
Sbjct: 378 GVHWTLAVINNRESKLLYLDSLNGVDPM----ILNALAKYMGDEANEKSGKKIDANSWDM 433
Query: 159 ---VDSPQQTNGYDCGVYVI 175
D PQQ NGYDCG++++
Sbjct: 434 EFVEDLPQQKNGYDCGMFML 453
>sp|Q9EQE1|SENP2_RAT Sentrin-specific protease 2 OS=Rattus norvegicus GN=Senp2 PE=1 SV=1
Length = 588
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 78/190 (41%), Gaps = 25/190 (13%)
Query: 1 MGKSAADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSI 60
+G D+ + S + + R D+ L ++LND +I FY + L Q +
Sbjct: 379 LGHGPPDEILSSAFKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERSKKQGYPALHALS 438
Query: 61 AFWILNCPDATY--LKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNV 118
F+ Y +K + + + L +++LV+ P++ HWSL+V +
Sbjct: 439 TFFYPKLKSGGYQAVKRWTKGVNLFDQELVLVPIHRK---------VHWSLVVMDLRKKC 489
Query: 119 FVHHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCV----------DSPQQTNGY 168
+ DS + K ++ ++ ++ D + L+ + + PQQ NG
Sbjct: 490 LKYLDSMGQ----KGHRICEILLQYLQDESKTKRNTDLNLLEWTHYSMKPHEIPQQLNGS 545
Query: 169 DCGVYVIAIA 178
DCG++ A
Sbjct: 546 DCGMFTCKYA 555
>sp|Q9HC62|SENP2_HUMAN Sentrin-specific protease 2 OS=Homo sapiens GN=SENP2 PE=1 SV=3
Length = 589
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 78/190 (41%), Gaps = 25/190 (13%)
Query: 1 MGKSAADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSI 60
+G D+ + S + + R D+ L ++LND +I FY + L Q +
Sbjct: 380 LGHGPQDEILSSAFKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPALHVFS 439
Query: 61 AFWILNCPDATY--LKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNV 118
F+ Y +K + + + L E+++++ P++ HWSL+V +
Sbjct: 440 TFFYPKLKSGGYQAVKRWTKGVNLFEQEIILVPIHRK---------VHWSLVVIDLRKKC 490
Query: 119 FVHHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCV----------DSPQQTNGY 168
+ DS + K ++ ++ ++ D + L+ + + PQQ NG
Sbjct: 491 LKYLDSMGQ----KGHRICEILLQYLQDESKTKRNSDLNLLEWTHHSMKPHEIPQQLNGS 546
Query: 169 DCGVYVIAIA 178
DCG++ A
Sbjct: 547 DCGMFTCKYA 556
>sp|Q5R7K7|SENP2_PONAB Sentrin-specific protease 2 OS=Pongo abelii GN=SENP2 PE=2 SV=1
Length = 589
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 78/190 (41%), Gaps = 25/190 (13%)
Query: 1 MGKSAADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSI 60
+G D+ + S + + R D+ L ++LND +I FY + L Q +
Sbjct: 380 LGHGPQDEILSSAFKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPALHVFS 439
Query: 61 AFWILNCPDATY--LKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNV 118
F+ Y +K + + + L E+++++ P++ HWSL+V +
Sbjct: 440 TFFYPKLKSGGYQAVKRWTKGVNLFEQEIILVPIHRK---------VHWSLVVIDLRKKC 490
Query: 119 FVHHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCV----------DSPQQTNGY 168
+ DS + K ++ ++ ++ D + L+ + + PQQ NG
Sbjct: 491 LKYLDSMGQ----KGHRICEILLQYLQDESKTKRNIDLNLLEWTHYSMKPHEIPQQLNGS 546
Query: 169 DCGVYVIAIA 178
DCG++ A
Sbjct: 547 DCGMFTCKYA 556
>sp|Q09275|ULP4_CAEEL Putative thiol protease ulp-4 OS=Caenorhabditis elegans GN=ulp-4
PE=3 SV=2
Length = 382
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 95/245 (38%), Gaps = 53/245 (21%)
Query: 13 YNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQ---DILLVPPSIAFWILNCPD 69
+ + +R SD L LND +I+FY +++ ++ + V PSI + L+
Sbjct: 128 FQSIAIRISDFCCLQEKDLLNDTMIDFYLNHIVEHVLPDSNGSNVTVLPSIFWHNLSLRQ 187
Query: 70 ATY--------------------LKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSL 109
+ L +F+ L + ++ PVN+ HWSL
Sbjct: 188 HAFDSEDEKMMSDEQKMDLKFGDLHDFVADFDLQDFDYIVVPVNE---------WEHWSL 238
Query: 110 IV----YERNGNVFVHHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKY----LDCV-- 159
V + + DS + + + + + FM S G L C+
Sbjct: 239 AVICHPFTAQARTVI-FDSQLTADLNNLQNMATLIESFMKYSYEKRTGNAMPFPLPCILP 297
Query: 160 -DSPQQTNGYDCGVYVIAIARAICCWYESSEHKDAEGMWFSFVKEQ---VTSTVVSQMRK 215
PQQTN +DCG+++ AR S KD + F F +E T+T ++M++
Sbjct: 298 QRMPQQTNNFDCGIFIAEFARRFLL----SPPKDLDN--FDFAREYPDFSTATKRTEMQR 351
Query: 216 EILQL 220
+L L
Sbjct: 352 VVLSL 356
>sp|Q0WKV8|ULP2A_ARATH Probable ubiquitin-like-specific protease 2A OS=Arabidopsis
thaliana GN=ULP2A PE=2 SV=2
Length = 774
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 81/196 (41%), Gaps = 46/196 (23%)
Query: 16 VVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQD-------ILLVPPSIAFWILNCP 68
VV+R+ D+++L F+ND II+FY YL + + ++ +A P
Sbjct: 305 VVVRKQDIELLKPRRFINDTIIDFYIKYLKNRISPKERGRFHFFNCFFFRKLANLDKGTP 364
Query: 69 DA-------TYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVH 121
++++ + + L EK + P+N HWSL++ G +
Sbjct: 365 STCGGREAYQRVQKWTKNVDLFEKDYIFIPIN---------CSFHWSLVIICHPGELVPS 415
Query: 122 HDSNHR-------MNKIKAR------KLFSAVV---------GFMGDSTSASNGKYLDCV 159
H N + ++ IK +F + + DS+ A N + + +
Sbjct: 416 HVENPQRVPCILHLDSIKGSHKGGLINIFPSYLREEWKARHENTTNDSSRAPNMQSI-SL 474
Query: 160 DSPQQTNGYDCGVYVI 175
+ PQQ N +DCG++++
Sbjct: 475 ELPQQENSFDCGLFLL 490
>sp|Q9P0U3|SENP1_HUMAN Sentrin-specific protease 1 OS=Homo sapiens GN=SENP1 PE=1 SV=2
Length = 644
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 76/189 (40%), Gaps = 18/189 (9%)
Query: 3 KSAADDKILSYN-DVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSIA 61
++ D++LS + + R D+ L+ +LND II FY + L + + V
Sbjct: 436 RNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSVHAFNT 495
Query: 62 FWILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLA--EGGSHWSLIVYERNGNVF 119
F+ A Y + +K KK+ +F V D+ L G HW L V +
Sbjct: 496 FFFTKLKTAGY-----QAVKRWTKKVDVFSV----DILLVPIHLGVHWCLAVVDFRKKNI 546
Query: 120 VHHDSNHRMNKIKARKLFSAVVGFMGDSTSA---SNGKYLDCVDS---PQQTNGYDCGVY 173
++DS +N R L + D +NG L S PQQ NG DCG++
Sbjct: 547 TYYDSMGGINNEACRILLQYLKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDCGMF 606
Query: 174 VIAIARAIC 182
A I
Sbjct: 607 ACKYADCIT 615
>sp|Q5RBB1|SENP1_PONAB Sentrin-specific protease 1 OS=Pongo abelii GN=SENP1 PE=2 SV=1
Length = 645
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 76/189 (40%), Gaps = 18/189 (9%)
Query: 3 KSAADDKILSYN-DVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSIA 61
++ D++LS + + R D+ L+ +LND II FY + L + + V
Sbjct: 437 RNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSVHAFNT 496
Query: 62 FWILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLA--EGGSHWSLIVYERNGNVF 119
F+ A Y + +K KK+ +F V D+ L G HW L V +
Sbjct: 497 FFFTKLKTAGY-----QAVKRWTKKVDVFSV----DILLVPIHLGVHWCLAVVDFRKKNI 547
Query: 120 VHHDSNHRMNKIKARKLFSAVVGFMGDSTSA---SNGKYLDCVDS---PQQTNGYDCGVY 173
++DS +N R L + D +NG L S PQQ NG DCG++
Sbjct: 548 TYYDSMGGINNEACRILLQYLKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDCGMF 607
Query: 174 VIAIARAIC 182
A I
Sbjct: 608 ACKYADCIT 616
>sp|P59110|SENP1_MOUSE Sentrin-specific protease 1 OS=Mus musculus GN=Senp1 PE=2 SV=1
Length = 640
Score = 39.3 bits (90), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 75/188 (39%), Gaps = 18/188 (9%)
Query: 3 KSAADDKILSYN-DVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSIA 61
++ D++LS + + R D+ L+ +LND II FY + L + V
Sbjct: 432 RNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGFPSVHAFNT 491
Query: 62 FWILNCPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLA--EGGSHWSLIVYERNGNVF 119
F+ A Y + +K KK+ +F V D+ L G HW L V +
Sbjct: 492 FFFTKLKTAGY-----QAVKRWTKKVDVFSV----DILLVPIHLGVHWCLAVVDFRRKSI 542
Query: 120 VHHDSNHRMNKIKARKLFSAVVGFMGDSTSA---SNGKYLDCVDS---PQQTNGYDCGVY 173
++DS +N R L + D +NG L S PQQ NG DCG++
Sbjct: 543 TYYDSMGGINNEACRILLQYLKQESVDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDCGMF 602
Query: 174 VIAIARAI 181
A I
Sbjct: 603 ACKYADCI 610
>sp|O65278|ULP1B_ARATH Putative ubiquitin-like-specific protease 1B OS=Arabidopsis
thaliana GN=ULP1B PE=5 SV=2
Length = 341
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 11/78 (14%)
Query: 106 HWSLIVYERNGNVFVHHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCV------ 159
HW+L V FV+ DS + + +A+ ++ D + K +D
Sbjct: 231 HWTLGVINNRERKFVYLDS---LFTGVGHTILNAMAKYLVDEVKQKSQKNIDVSSWGMEY 287
Query: 160 --DSPQQTNGYDCGVYVI 175
+ PQQ NGYDCG++++
Sbjct: 288 VEERPQQQNGYDCGMFML 305
>sp|Q96HI0|SENP5_HUMAN Sentrin-specific protease 5 OS=Homo sapiens GN=SENP5 PE=1 SV=3
Length = 755
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 69/180 (38%), Gaps = 30/180 (16%)
Query: 13 YNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSIAFW------ILN 66
YN +L DL L G +LND++I Y + + VP + F+ L
Sbjct: 564 YNKHMLDMDDLATLDGQNWLNDQVINMYGELI--------MDAVPDKVHFFNSFFHRQLV 615
Query: 67 CPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHDSN- 125
+K + + + L +K L++ P++ HWSLI + + +DS
Sbjct: 616 TKGYNGVKRWTKKVDLFKKSLLLIPIHLE---------VHWSLITVTLSNRIISFYDSQG 666
Query: 126 ----HRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVDSPQQTNGYDCGVYVIAIARAI 181
+ I+ L A + C+ PQQ N DCGV+V+ + +
Sbjct: 667 IHFKFCVENIRKYLLTEAREKNRPEFLQGWQTAVTKCI--PQQKNDSDCGVFVLQYCKCL 724
>sp|Q6NXL6|SENP5_MOUSE Sentrin-specific protease 5 OS=Mus musculus GN=Senp5 PE=2 SV=1
Length = 749
Score = 35.4 bits (80), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 69/180 (38%), Gaps = 30/180 (16%)
Query: 13 YNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSIAFW------ILN 66
YN +L DL L G +LND++I Y + + VP + F+ L
Sbjct: 558 YNKHMLDMDDLATLDGQNWLNDQVINMYGELI--------MDAVPDKVHFFNSFFHRQLV 609
Query: 67 CPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHDSN- 125
+K + + + L +K L++ P++ HWSLI + + +DS
Sbjct: 610 TKGYNGVKRWTKKVDLFKKSLLLIPIHLE---------VHWSLITVTLSSRIISFYDSQG 660
Query: 126 ----HRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVDSPQQTNGYDCGVYVIAIARAI 181
+ I+ L A + C+ PQQ N DCGV+V+ + +
Sbjct: 661 IHFKFCVENIRKYLLTEAREKNRPEFLQGWQTAVTKCI--PQQKNDSDCGVFVLQYCKCL 718
>sp|Q8WP32|SENP5_MACFA Sentrin-specific protease 5 OS=Macaca fascicularis GN=SENP5 PE=2
SV=1
Length = 755
Score = 35.4 bits (80), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 69/180 (38%), Gaps = 30/180 (16%)
Query: 13 YNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSIAFW------ILN 66
YN +L DL L G +LND++I Y + + VP + F+ L
Sbjct: 564 YNKHMLDMDDLATLDGQNWLNDQVINMYGELI--------MDAVPDKVHFFNSFFHRQLV 615
Query: 67 CPDATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHDSNH 126
+K + + + L +K L++ P++ HWSLI + + +DS
Sbjct: 616 TKGYNGVKRWTKKVDLFKKSLLLIPIHLE---------VHWSLITVTLSNRIISFYDSQG 666
Query: 127 R-----MNKIKARKLFSAVVGFMGDSTSASNGKYLDCVDSPQQTNGYDCGVYVIAIARAI 181
+ I+ L A + C+ PQQ N DCGV+V+ + +
Sbjct: 667 IHFKFCVENIRKYLLTEAREKNRPEFLQGWQTAVTKCI--PQQKNDSDCGVFVLQYCKCL 724
>sp|Q09353|SENP_CAEEL Sentrin-specific protease OS=Caenorhabditis elegans GN=ulp-1 PE=2
SV=3
Length = 697
Score = 35.4 bits (80), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 66/167 (39%), Gaps = 28/167 (16%)
Query: 20 RSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSIA---FWILNCPDATY--LK 74
+ DL LSG ++LND II FY + C S P A F+ N Y +K
Sbjct: 505 KKDLATLSGLHWLNDEIINFYLQLI--CDRSNGDSKYPKIYAFNTFFYSNIVSKGYASVK 562
Query: 75 EFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHDSNHRMNKIKAR 134
+ + + +V+ PV+ G HW + V + +DS + N
Sbjct: 563 RWTRKVDIFAFDIVLVPVH---------LGMHWCMAVIDMGEKKIEFYDSLYDGNTA--- 610
Query: 135 KLFSAVVGFMGDSTSASNGKYLD--------CVDSPQQTNGYDCGVY 173
+ A+ G++ + ++ D P+Q NG DCGV+
Sbjct: 611 -VLPALRGYLEAESLDKKKTAMNFSGWTIQQMTDIPRQQNGSDCGVF 656
>sp|Q8L7S0|ULP2B_ARATH Probable ubiquitin-like-specific protease 2B OS=Arabidopsis
thaliana GN=ULP2B PE=2 SV=3
Length = 931
Score = 35.0 bits (79), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 81/203 (39%), Gaps = 57/203 (28%)
Query: 16 VVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQ-----------------DILLVPP 58
V + + D+++L F+ND II+FY +YL + + ++ D+ P
Sbjct: 394 VSICKRDVELLQPETFVNDTIIDFYINYLKNQIQTEEKHRFHFFNSFFFRKLADLDKDPS 453
Query: 59 SIAFWILNCPDATYL--KEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNG 116
SIA A +L +++ + + K + PVN N HWSLIV G
Sbjct: 454 SIADG-----KAAFLRVRKWTRKVDMFGKDYIFVPVNYN---------LHWSLIVICHPG 499
Query: 117 NVFVHHDSN----------HRMNKIKARK--LFSAVVGFMGDSTSASNGKYLDCVDS--- 161
V D + M+ IK L + V ++ + + + D + S
Sbjct: 500 EVANRTDLDLDDSKKVPCILHMDSIKGSHAGLKNLVQTYLCEEWKERHKETSDDISSRFM 559
Query: 162 ---------PQQTNGYDCGVYVI 175
PQQ N +DCG++++
Sbjct: 560 NLRFVSLELPQQENSFDCGLFLL 582
>sp|O13769|ULP2_SCHPO Ubiquitin-like-specific protease 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ulp2 PE=1 SV=2
Length = 638
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 14 NDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSIA 61
N + + +DL L+ FLND I++FY YL L +Q+ PS+A
Sbjct: 345 NSIAITNTDLTRLNEGEFLNDTIVDFYLRYLYCKLQTQN-----PSLA 387
>sp|O67009|ILVD_AQUAE Dihydroxy-acid dehydratase OS=Aquifex aeolicus (strain VF5) GN=ilvD
PE=3 SV=1
Length = 555
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 68 PDATYLKEFIEPLKLPEKKLVIFPVNDN-----DDMSLAEGGSHWSL 109
P +L+EF+EP+K +KL P+ N D +++ G H+SL
Sbjct: 47 PGHVHLREFVEPIKEEVRKLGGVPIEFNVIGVDDGIAMGHEGMHYSL 93
>sp|Q8GYL3|ULP1A_ARATH Ubiquitin-like-specific protease 1A OS=Arabidopsis thaliana
GN=ULP1A PE=2 SV=2
Length = 502
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 24/123 (19%)
Query: 106 HWSLIVYERNGNVFVHHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCV------ 159
HW+L V F + DS K + K+ A+ + D + LD
Sbjct: 393 HWTLAVINIKDQKFQYLDSF----KGREPKILDALARYFVDEVRDKSEVDLDVSRWRQEF 448
Query: 160 --DSPQQTNGYDCGVYVIAIARAICCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEI 217
D P Q NG+DCG++++ +Y + G+ F +EQ+ ++ KEI
Sbjct: 449 VQDLPMQRNGFDCGMFMV----KYIDFY-------SRGLDLCFTQEQM-PYFRARTAKEI 496
Query: 218 LQL 220
LQL
Sbjct: 497 LQL 499
>sp|Q91FG7|VF357_IIV6 Uncharacterized protein 357R OS=Invertebrate iridescent virus 6
GN=IIV6-357R PE=3 SV=1
Length = 164
Score = 31.2 bits (69), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 16 VVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSIAFWILNCPDATYLKE 75
+V +R L PY+ N+ ++E+ F L+ L+ PS ++ILNC + T KE
Sbjct: 54 IVFKRLS-KFLKQPYYCNNNVVEYEFHNKKYKLMVNQSLIKKPS--YFILNCKEGTGKKE 110
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,055,965
Number of Sequences: 539616
Number of extensions: 3487286
Number of successful extensions: 6786
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 6737
Number of HSP's gapped (non-prelim): 35
length of query: 228
length of database: 191,569,459
effective HSP length: 113
effective length of query: 115
effective length of database: 130,592,851
effective search space: 15018177865
effective search space used: 15018177865
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)