Query 027072
Match_columns 228
No_of_seqs 115 out of 1147
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 07:02:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027072.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027072hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bkr_A Sentrin-specific protea 100.0 3.8E-49 1.3E-53 322.5 25.2 208 7-227 2-212 (212)
2 1th0_A SMT3-, sentrin-specific 100.0 8.3E-40 2.8E-44 269.6 20.1 194 2-223 18-222 (226)
3 2xph_A Sentrin-specific protea 100.0 1.2E-38 4.1E-43 264.6 22.4 191 5-223 33-234 (238)
4 1euv_A ULP1 protease; SUMO hyd 100.0 1.3E-38 4.5E-43 261.5 19.1 190 5-225 22-219 (221)
5 2oix_A Xanthomonas outer prote 100.0 6.3E-39 2.2E-43 256.7 11.9 173 28-225 1-182 (186)
6 3eay_A Sentrin-specific protea 100.0 2.3E-37 7.9E-42 264.3 17.4 202 6-227 17-316 (323)
7 4ekf_A Adenain; alpha and beta 97.4 0.0013 4.4E-08 51.1 9.6 95 89-187 40-139 (204)
8 3k8u_A Putative ABC transporte 26.8 47 0.0016 24.0 3.1 22 160-181 7-28 (156)
9 4g59_A RAE-1-gamma, retinoic a 23.8 68 0.0023 24.9 3.6 26 101-126 18-43 (205)
10 1oeg_A Apolipoprotein E; siali 20.1 49 0.0017 16.9 1.3 17 210-226 3-19 (26)
No 1
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A
Probab=100.00 E-value=3.8e-49 Score=322.51 Aligned_cols=208 Identities=35% Similarity=0.654 Sum_probs=182.5
Q ss_pred CCceEEECCeEEehhhhhccCCCCccChHHHHHHHHHHhhhcc---CCCeeeeChhhhHHHhcCCChHHHHHhhccCCCC
Q 027072 7 DDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLV---SQDILLVPPSIAFWILNCPDATYLKEFIEPLKLP 83 (228)
Q Consensus 7 ~~~v~~~~~~~l~~~Dl~~L~~~~wLnD~iI~~~~~~L~~~~~---~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (228)
++++++|+|++|+.+|+++|.+++||||++|+||+++|.+... ..+++|++|+++|++.++++++.+++|+++++++
T Consensus 2 d~~~l~~~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~~~~~~~~~~p~~s~f~~~~~~~~~v~~~~~~~~l~ 81 (212)
T 2bkr_A 2 DPVVLSYMDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDSSDHVSFISPEVTQFIKCTSNPAEIAMFLEPLDLP 81 (212)
T ss_dssp CCEEEEETTEEEEHHHHHTTSTTSCCBHHHHHHHHHHHHHTTTGGGTTTEEEECHHHHHHHHHCCCHHHHHHHHGGGTGG
T ss_pred CCEEEEECCEEEeHHHHhhcCCCCCcCHHHHHHHHHHHHHhhccCCCCcEEEEChHHHHHHHhCCCHHHHHHHhcccccc
Confidence 6899999999999999999999999999999999999998652 4679999999999999888888999999999999
Q ss_pred CCcEEEEeeecCCCcCcCCCCceeEEEEEEcCCCeEEEEeCCCCCCHHHHHHHHHHHHHhhcCcCCCCCCeeecCCCCCC
Q 027072 84 EKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVDSPQ 163 (228)
Q Consensus 84 ~~~~I~iPin~n~~~~~~~~~~HW~Llvv~~~~~~i~~~DSl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~v~~~~~pq 163 (228)
++++||+|||+|++++ .+++||+|+||+.++++++|||||++.+...++.+++.++.+++.+. .++.+.. ..+||
T Consensus 82 ~~~~i~iPIn~n~~~~--~~~~HW~L~vi~~~~~~i~~~DSl~~~n~~~~~~l~~~l~~~l~~~~--~~~~~~~-~~~Pq 156 (212)
T 2bkr_A 82 NKRVVFLAINDNSNQA--AGGSHWSLLVYLQDKNSFFHYDSHSRSNSVHAKQVAEKLEAFLGRKG--DKLAFVE-EKAPA 156 (212)
T ss_dssp GCSEEEEEEECCCSSS--SBCCCEEEEEEEGGGTEEEEECSSTTTTHHHHHHHHHHHHHHHSCTT--CCCCEEE-CCCCC
T ss_pred cCCEEEEEEecCCCCC--CCCCCeEEEEEEecCCeEEEEeCCCCCCHHHHHHHHHHHHHHhCCcc--ccceEeE-CCCCC
Confidence 9999999999976654 57999999999999999999999999998888889999999998653 2445654 78999
Q ss_pred CCCCCccHHHHHHHHHHHHHHhhcccCcccccchhhhhccccChHHHHHHHHHHHHHHHHhhhc
Q 027072 164 QTNGYDCGVYVIAIARAICCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKGLMEK 227 (228)
Q Consensus 164 Q~n~~DCGvfvl~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~R~~i~~~i~~l~~~ 227 (228)
|+||+|||+|||+||++++++...+.. ++ ....++++.|+++|++|+++|.+|.+|
T Consensus 157 Q~N~~DCGvfvl~~~~~l~~~~~~~~~-------~~-~~~~~~~~~i~~~R~~i~~lI~~L~~~ 212 (212)
T 2bkr_A 157 QQNSYDCGMYVICNTEALCQNFFRQQT-------ES-LLQLLTPAYITKKRGEWKDLIATLAKK 212 (212)
T ss_dssp CSSSSTHHHHHHHHHHHHHHHHHSCCC-------CC-HHHHCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCcHHHHHHHHHHHHHHHhhhcCc-------cc-ccccCCHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999998755321 11 235778999999999999999999763
No 2
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A
Probab=100.00 E-value=8.3e-40 Score=269.57 Aligned_cols=194 Identities=21% Similarity=0.282 Sum_probs=158.3
Q ss_pred CCCCCCCceEEECCeEEehhhhhccCCCCccChHHHHHHHHHHhhhcc---CCCeeeeChhhhHHHhcCC--ChHHHHHh
Q 027072 2 GKSAADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLV---SQDILLVPPSIAFWILNCP--DATYLKEF 76 (228)
Q Consensus 2 ~~~~~~~~v~~~~~~~l~~~Dl~~L~~~~wLnD~iI~~~~~~L~~~~~---~~~i~~~~p~~~~~~~~~~--~~~~~~~~ 76 (228)
+...++++++++.++.|+.+|+.+|.+++||||+||+||+++|.++.. .++++++++ +++.++. +++.+++|
T Consensus 18 ~~~~~~~~~~~~~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~~~~~~~~f~s---~f~~~l~~~~~~~v~~w 94 (226)
T 1th0_A 18 GHGPQDEILSSAFKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPALHVFST---FFYPKLKSGGYQAVKRW 94 (226)
T ss_dssp SSSCTTCEEEEETTEEEEHHHHGGGSTTCCCCHHHHHHHHHHHHHHHHHHTCCCEEECCT---THHHHHHHHTGGGTGGG
T ss_pred ccCCccceeeccCCeEEEHHHHhhcCCCCccChHHHHHHHHHHHHhhhhccCCcEEEEeH---HHHHHhhhcccHHHHHH
Confidence 346789999999999999999999999999999999999999987543 357888864 3443332 25678999
Q ss_pred hccCCCCCCcEEEEeeecCCCcCcCCCCceeEEEEEEcCCCeEEEEeCCCCCCHHHHHHHHHHHHHhhcCc----CCCCC
Q 027072 77 IEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHDSNHRMNKIKARKLFSAVVGFMGDS----TSASN 152 (228)
Q Consensus 77 ~~~~~~~~~~~I~iPin~n~~~~~~~~~~HW~Llvv~~~~~~i~~~DSl~~~~~~~~~~i~~~l~~~l~~~----~~~~~ 152 (228)
+++.+++++++||+|||. ++||+|+||+.++++|+|||||++.+...++.+.+.+....... ....+
T Consensus 95 ~~~~~l~~~~~i~iPin~---------~~HW~l~vi~~~~~~i~~~DSl~~~~~~~~~~l~~~l~~e~~~k~~~~~~~~~ 165 (226)
T 1th0_A 95 TKGVNLFEQEIILVPIHR---------KVHWSLVVIDLRKKCLKYLDSMGQKGHRICEILLQYLQDESKTKRNSDLNLLE 165 (226)
T ss_dssp GTTCCGGGSSEEEEEEEE---------TTEEEEEEEETTTTEEEEECTTCCCCHHHHHHHHHHHHHHHHHHTSCCCCGGG
T ss_pred hhcCCcccCCEEEEeEEe---------CcEEEEEEEEcCCCceEEEcCCCCCchHHHHHHHHHHHHHHHHhcCCCCCccc
Confidence 999999999999999997 79999999999999999999999988777777777776544211 11245
Q ss_pred Ceee--cCCCCCCCCCCCccHHHHHHHHHHHHHHhhcccCcccccchhhhhccccChHHHHHHHHHHHHHHHH
Q 027072 153 GKYL--DCVDSPQQTNGYDCGVYVIAIARAICCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKG 223 (228)
Q Consensus 153 ~~~v--~~~~~pqQ~n~~DCGvfvl~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~R~~i~~~i~~ 223 (228)
|++. ....+|||.||+|||+|||+||++++++.+ ..++++.+..+|++|...|.+
T Consensus 166 w~~~~~~~~~~PqQ~Ng~DCGvfvl~~~~~~~~~~~----------------~~f~q~dm~~~R~~~~~ei~~ 222 (226)
T 1th0_A 166 WTHHSMKPHEIPQQLNGSDCGMFTCKYADYISRDKP----------------ITFTQHQMPLFRKKMVWEILH 222 (226)
T ss_dssp CEEEECCTTTSCCCCSSSCHHHHHHHHHHHHTTTCC----------------CCCCGGGHHHHHHHHHHHHHH
T ss_pred ceeccccCCCCCCCCCCCCHHHHHHHHHHHHhCCCC----------------CccChhhHHHHHHHHHHHHHh
Confidence 7764 246899999999999999999999988421 256788899999999988764
No 3
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A
Probab=100.00 E-value=1.2e-38 Score=264.56 Aligned_cols=191 Identities=20% Similarity=0.292 Sum_probs=155.2
Q ss_pred CCCCceEEECCeEEehhhhhccCCCCccChHHHHHHHHHHhhhccC---CCeeeeChhhhHHHhcC--CChHHHHHhhcc
Q 027072 5 AADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVS---QDILLVPPSIAFWILNC--PDATYLKEFIEP 79 (228)
Q Consensus 5 ~~~~~v~~~~~~~l~~~Dl~~L~~~~wLnD~iI~~~~~~L~~~~~~---~~i~~~~p~~~~~~~~~--~~~~~~~~~~~~ 79 (228)
++++.+.+..++.|+.+|+.+|.+++||||++|+||+++|.++... .+++++++ |++.++ .+++.+++|+++
T Consensus 33 ~~~~vl~~~~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~~~~~~~~f~s---ff~~~l~~~~~~~v~~w~~~ 109 (238)
T 2xph_A 33 NQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSVHAFNT---FFFTKLKTAGYQAVKRWTKK 109 (238)
T ss_dssp CTTCCCEEETTEEECHHHHHTTSTTCCCCHHHHHHHHHHHHHHTTSTTSCCEEECCT---TTTHHHHTTCHHHHTTTTTT
T ss_pred ChhheeecCCCcEEeHHHHhhcCCCCccCHHHHHHHHHHHHHhhhhcCCCceeeeec---HHHHHhhhcccHHHHHHhcc
Confidence 3445555556999999999999999999999999999999876542 45676654 444333 236789999999
Q ss_pred CCCCCCcEEEEeeecCCCcCcCCCCceeEEEEEEcCCCeEEEEeCCCCCCHHHHHHHHHHHHHhhc----CcCCCCCCee
Q 027072 80 LKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHDSNHRMNKIKARKLFSAVVGFMG----DSTSASNGKY 155 (228)
Q Consensus 80 ~~~~~~~~I~iPin~n~~~~~~~~~~HW~Llvv~~~~~~i~~~DSl~~~~~~~~~~i~~~l~~~l~----~~~~~~~~~~ 155 (228)
++++++++||+|||. ++||+|+||+.++++++|||||++.+...++.+.+.++...+ ......+|++
T Consensus 110 ~~l~~~~~i~iPin~---------~~HW~L~vi~~~~~~i~~~DSl~~~~~~~~~~l~~~L~~e~~~k~~~~~~~~~w~~ 180 (238)
T 2xph_A 110 VDVFSVDILLVPIHL---------GVHWCLAVVDFRKKNITYYDSMGGINNEACRILLQYLKQESIDKKRKEFDTNGWQL 180 (238)
T ss_dssp CCGGGSSEEEEEEEE---------TTEEEEEEEETTTTEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHCSCCCCTTCEE
T ss_pred CCcccCCEEEEcccC---------CCceEEEEEEcccceEEEeecccCCCHHHHHHHHHHHHHHHHHhcCCCcCccccee
Confidence 999999999999997 799999999999999999999999988777777777766543 2223457776
Q ss_pred e--cCCCCCCCCCCCccHHHHHHHHHHHHHHhhcccCcccccchhhhhccccChHHHHHHHHHHHHHHHH
Q 027072 156 L--DCVDSPQQTNGYDCGVYVIAIARAICCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKG 223 (228)
Q Consensus 156 v--~~~~~pqQ~n~~DCGvfvl~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~R~~i~~~i~~ 223 (228)
. ....+|||.||+|||+|||+||++++++.+ ..++++.+..+|++|...|.+
T Consensus 181 ~~~~~~~~PqQ~Ng~DCGvfvl~~~e~~~~~~~----------------~~f~q~dm~~~R~~m~~eil~ 234 (238)
T 2xph_A 181 FSKKSQEIPQQMNGSDCGMFACKYADCITKDRP----------------INFTQQHMPYFRKRMVWEILH 234 (238)
T ss_dssp EECCSSSSCCCSBGGGHHHHHHHHHHHHHTTCC----------------CCCCGGGHHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCC----------------CCcChhhHHHHHHHHHHHHHh
Confidence 4 247899999999999999999999998421 256788899999999988865
No 4
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A
Probab=100.00 E-value=1.3e-38 Score=261.51 Aligned_cols=190 Identities=21% Similarity=0.351 Sum_probs=149.8
Q ss_pred CCCCceEEECCeEEehhhhhccCCCCccChHHHHHHHHHHhhhccCCCeeeeChhhhHHHhcCC--ChHHHHHhhc--cC
Q 027072 5 AADDKILSYNDVVLRRSDLDILSGPYFLNDRIIEFYFSYLSSCLVSQDILLVPPSIAFWILNCP--DATYLKEFIE--PL 80 (228)
Q Consensus 5 ~~~~~v~~~~~~~l~~~Dl~~L~~~~wLnD~iI~~~~~~L~~~~~~~~i~~~~p~~~~~~~~~~--~~~~~~~~~~--~~ 80 (228)
.+++.+++..++.|+.+|+.+|.+++||||+||+||+++|.+..+ +++++++ +++.++. +++.+++|++ +.
T Consensus 22 ~~~~~l~~~~~i~i~~~Dl~~L~~~~wLND~vI~fy~~~l~~~~~--~~~~f~s---~f~~~l~~~~~~~v~rw~~~~~~ 96 (221)
T 1euv_A 22 RENTQLMNRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKSTP--NTVAFNS---FFYTNLSERGYQGVRRWMKRKKT 96 (221)
T ss_dssp SSCCEEEEETTEEEEHHHHGGGSTTCCCBHHHHHHHHHHHHHHST--TEEECCT---HHHHHHHHHTGGGTTTTTGGGTS
T ss_pred CCCeeeecCCCeEEEHHHHhhhcCCCCCCHHHHHHHHHHHHhcCC--CeEEEEc---HHHHHhhhhccHHHHHHHHhccC
Confidence 457788999999999999999999999999999999999987653 5666653 4444332 3567788886 56
Q ss_pred CCCCCcEEEEeeecCCCcCcCCCCceeEEEEEEcCCCeEEEEeCCCCC-CHHHHHHHHHHHHHhhcCcC---CCCCCeee
Q 027072 81 KLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHDSNHRM-NKIKARKLFSAVVGFMGDST---SASNGKYL 156 (228)
Q Consensus 81 ~~~~~~~I~iPin~n~~~~~~~~~~HW~Llvv~~~~~~i~~~DSl~~~-~~~~~~~i~~~l~~~l~~~~---~~~~~~~v 156 (228)
+++++++||+|||.| ++||+|+|++.++++|+|||||++. +... ..+++.++.++..+. ...+++++
T Consensus 97 ~~~~~~~i~iPin~~--------~~HW~l~vi~~~~~~i~~~DSl~~~~~~~~-~~i~~~l~~~l~~e~~~~~~~~~~~~ 167 (221)
T 1euv_A 97 QIDKLDKIFTPINLN--------QSHWALGIIDLKKKTIGYVDSLSNGPNAMS-FAILTDLQKYVMEESKHTIGEDFDLI 167 (221)
T ss_dssp CGGGCSEEEEEEEET--------TTEEEEEEEETTTTEEEEECSSCCSCCHHH-HHHHHHHHHHHHHHTTSSSCTTCEEE
T ss_pred CcccCCEEEEEEEcC--------CCeEEEEEEEcCCCEEEEEecCCCCCcchH-HHHHHHHHHHHHHHHHHhcCCCceEe
Confidence 899999999999983 7999999999999999999999854 4422 234455555543211 13457775
Q ss_pred cCCCCCCCCCCCccHHHHHHHHHHHHHHhhcccCcccccchhhhhccccChHHHHHHHHHHHHHHHHhh
Q 027072 157 DCVDSPQQTNGYDCGVYVIAIARAICCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKGLM 225 (228)
Q Consensus 157 ~~~~~pqQ~n~~DCGvfvl~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~R~~i~~~i~~l~ 225 (228)
. ..+|||.||+|||+|||+||++++++.+ -.++++.+..+|++|...|.+..
T Consensus 168 ~-~~~PqQ~N~~DCGvfv~~~~~~~~~~~~----------------l~f~~~d~~~~R~~i~~~Il~~~ 219 (221)
T 1euv_A 168 H-LDCPQQPNGYDCGIYVCMNTLYGSADAP----------------LDFDYKDAIRMRRFIAHLILTDA 219 (221)
T ss_dssp E-ECCCCCSSSSTHHHHHHHHHHHHHTTCC----------------CCCCHHHHHHHHHHHHHHHHTTT
T ss_pred e-cCCCCCCCCcCHHHHHHHHHHHHhCCCC----------------CCcCHHHHHHHHHHHHHHHHhcc
Confidence 4 7899999999999999999999988421 25678999999999999998653
No 5
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A
Probab=100.00 E-value=6.3e-39 Score=256.69 Aligned_cols=173 Identities=16% Similarity=0.190 Sum_probs=135.3
Q ss_pred CCCccChHHHHHHHHHHhhhcc---C-CCeeeeChhhhHHHhcCCC--hHHHHHhhccCCCCCCcEEEEeeecCCCcCcC
Q 027072 28 GPYFLNDRIIEFYFSYLSSCLV---S-QDILLVPPSIAFWILNCPD--ATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLA 101 (228)
Q Consensus 28 ~~~wLnD~iI~~~~~~L~~~~~---~-~~i~~~~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~I~iPin~n~~~~~~ 101 (228)
+++||||+||+||+++|.++.. . ..++|++|++++++...++ .+.+.+|++..++ +++||+|||.
T Consensus 1 ~~~WLND~iI~fy~~~L~~~~~~~~~~~~v~f~~p~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~i~iPin~------- 71 (186)
T 2oix_A 1 ATSWLLDGHLRAYTDDLARRLRGEPNAHLLHFADSQVVTMLSSADPDQQARAQRLLAGDDI--PPIVFLPINQ------- 71 (186)
T ss_dssp -CCCCCHHHHHHHHHHHHHHTTTSTTGGGEEECCHHHHHHTTCSSHHHHHHHHHHHHSTTS--CSEEEEEEEE-------
T ss_pred CCCCcChHHHHHHHHHHHHHhhhccCcceEEEECHHHHHHHHhCCHHHHHHHHHHcccccc--cCEEEEEEeC-------
Confidence 4799999999999999998653 2 2399999998888876652 1255666665443 9999999998
Q ss_pred CCCceeEEEEEEcCCCeE---EEEeCCCCCCHHHHHHHHHHHHHhhcCcCCCCCCeeecCCCCCCCCCCCccHHHHHHHH
Q 027072 102 EGGSHWSLIVYERNGNVF---VHHDSNHRMNKIKARKLFSAVVGFMGDSTSASNGKYLDCVDSPQQTNGYDCGVYVIAIA 178 (228)
Q Consensus 102 ~~~~HW~Llvv~~~~~~i---~~~DSl~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~v~~~~~pqQ~n~~DCGvfvl~~~ 178 (228)
+|+||+|+||+.+++++ +|||||++.+.. ++.+++.++.+++.+ ..++.. ..+|||.||+|||+|||+||
T Consensus 72 -~~~HWsLlvi~~~~~~~~~~~~~DSl~~~~~~-~~~l~~~l~~~l~~~----~~~~~~-~~~PqQ~Ng~DCGvfv~~~~ 144 (186)
T 2oix_A 72 -PNAHWSLLVVDRRNKDAVAAYHYDSMAQKDPQ-QRYLADMAAYHLGLD----YQQTHE-MPIAIQSDGYSAGDHVLTGI 144 (186)
T ss_dssp -TTTEEEEEEEECSSTTSCEEEEECCCSSCCHH-HHHHHHHHHHHTTCC----GGGCEE-ECBCCCC--CCHHHHHHHHH
T ss_pred -CCCccEEEEEECCCCeeeeeEEEcCCCCCCHH-HHHHHHHHHHHhCCC----cccccc-CCCCCCCCCCCHHHHHHHHH
Confidence 48999999999999999 999999987765 677888898888743 223433 78999999999999999999
Q ss_pred HHHHHHhhcccCcccccchhhhhccccChHHHHHHHHHHHHHHHHhh
Q 027072 179 RAICCWYESSEHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKGLM 225 (228)
Q Consensus 179 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~R~~i~~~i~~l~ 225 (228)
++++++...+.. . -...+++++|+++|++|+++|.++-
T Consensus 145 ~~l~~~~~~~~~--~-------~~~~~~~~~i~~~R~~i~~lI~~~~ 182 (186)
T 2oix_A 145 EVLAHRVLDGTF--D-------YAGGRDLTDIEPDRGLIRDRLAQAE 182 (186)
T ss_dssp HHHHHHHHHTCT--T-------STTTTCBTTCCCCHHHHHHHHHCC-
T ss_pred HHHHHHHhhcCc--c-------CCCcCCHHHHHHHHHHHHHHHHhcc
Confidence 999998765432 1 1235567788999999999999873
No 6
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.3e-37 Score=264.31 Aligned_cols=202 Identities=23% Similarity=0.305 Sum_probs=151.1
Q ss_pred CCCceEEE------CCeEEehhhhhccCCCCccChHHHHHHHHHHh-hhcc---CCCeeeeChhhhHHHhcCCC------
Q 027072 6 ADDKILSY------NDVVLRRSDLDILSGPYFLNDRIIEFYFSYLS-SCLV---SQDILLVPPSIAFWILNCPD------ 69 (228)
Q Consensus 6 ~~~~v~~~------~~~~l~~~Dl~~L~~~~wLnD~iI~~~~~~L~-~~~~---~~~i~~~~p~~~~~~~~~~~------ 69 (228)
|-..++.| +|+.|+.+|+.+|.+++||||+||+||+++|. ++.+ ..++++++ +||+.++..
T Consensus 17 ~~~~~~~yP~~~~k~~i~it~~Dl~~L~~~~wLND~IInFyl~~L~~e~~~~~~~~r~h~Fn---SFFy~kL~~~~~~~~ 93 (323)
T 3eay_A 17 LVQKLIVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKASDELVERSHIFS---SFFYKCLTRKENNLT 93 (323)
T ss_dssp CCCEEEEESCTTSSSCEEEEHHHHHTTSTTCCCCHHHHHHHHHHHHHHTSCHHHHHTEEECC---THHHHHHSCC-----
T ss_pred CcceeEEeCCCCCCCceEEEHHHHHhhCCCCCcCHHHHHHHHHHHHhhhccccccCcEEEEc---hHHHHHHHhcccccc
Confidence 44555553 48999999999999999999999999999996 3333 24688775 456554431
Q ss_pred ------------hHHHHHhhccCCCCCCcEEEEeeecCCCcCcCCCCceeEEEEEEcCC---------------------
Q 027072 70 ------------ATYLKEFIEPLKLPEKKLVIFPVNDNDDMSLAEGGSHWSLIVYERNG--------------------- 116 (228)
Q Consensus 70 ------------~~~~~~~~~~~~~~~~~~I~iPin~n~~~~~~~~~~HW~Llvv~~~~--------------------- 116 (228)
++.+++|+++++++++++||||||. +.||+|+||+.+.
T Consensus 94 ~~~~~~s~~~~~y~~VrrWtrkvdlf~kD~I~IPIn~---------~~HW~LaVI~~P~~~~~~~~~~~~~~~~~~~~~~ 164 (323)
T 3eay_A 94 EDNPNLSMAQRRHKRVRTWTRHINIFNKDYIFVPVNE---------SSHWYLAVICFPWLEEAVYEDFPQTVSQQSQAQQ 164 (323)
T ss_dssp ---CCSCHHHHHHTTSGGGGTTCCGGGCSEEEEEEEE---------TTEEEEEEEECTTCSSCBCC--------------
T ss_pred cccccchhHHHHHHHHHHHHhhcccccCCEEEEecCC---------CCceEEEEEecCCccccccccccccccccccccc
Confidence 3467899999999999999999998 6999999999863
Q ss_pred -----------------------------------------CeEEEEeCCCCCC-HHHHHHHHHHHHHhhcCc------C
Q 027072 117 -----------------------------------------NVFVHHDSNHRMN-KIKARKLFSAVVGFMGDS------T 148 (228)
Q Consensus 117 -----------------------------------------~~i~~~DSl~~~~-~~~~~~i~~~l~~~l~~~------~ 148 (228)
++|.|||||++.. ....+.+.++|....... .
T Consensus 165 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~pcIl~lDSL~~~~~~~~~~~Lr~YL~~E~~~k~~~~~~f 244 (323)
T 3eay_A 165 SQNDNKTIDNDLRTTSTLSLSAEDSQSTESNMSVPKKMCKRPCILILDSLKAASVQNTVQNLREYLEVEWEVKLKTHRQF 244 (323)
T ss_dssp -----------------------------------CCCCBCSEEEEECSSCCSSHHHHHHHHHHHHHHHHHHHHSSCCCC
T ss_pred ccccccccccccccccccccccccccccccccccccccCCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHhhcCCCcCC
Confidence 2599999999864 444455555554433211 1
Q ss_pred CCCCCeeecCCCCCCCCCCCccHHHHHHHHHHHHHHhhcc-cCcccccchhhhhccccChHHHHHHHHHHHHHHHHhhhc
Q 027072 149 SASNGKYLDCVDSPQQTNGYDCGVYVIAIARAICCWYESS-EHKDAEGMWFSFVKEQVTSTVVSQMRKEILQLIKGLMEK 227 (228)
Q Consensus 149 ~~~~~~~v~~~~~pqQ~n~~DCGvfvl~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~R~~i~~~i~~l~~~ 227 (228)
....|..+ ++.+|||.|++|||+|||+||++++++.... ...... ..-+++..|+.+|++|+++|.+|..+
T Consensus 245 ~~~~~~~~-~~~~P~Q~N~~DCGvfvl~~~e~~~~~~~~~f~~~~~~-------~~wf~~~~i~~kR~ei~~LI~~L~~~ 316 (323)
T 3eay_A 245 SKTNMVDL-CPKVPKQDNSSDCGVYLLQYVESFFKDPIVNFELPIHL-------EKWFPRHVIKTKREDIRELILKLHLQ 316 (323)
T ss_dssp CTTTSCEE-CCBCCCCCSTTCHHHHHHHHHHHHHHSCCCCCCSSCBC-------TTSSCHHHHHTHHHHHHHHHHHHHHH
T ss_pred CHhHceec-cCCCCCcCCCCcHHHHHHHHHHHHHhCCcccccccccc-------ccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 12345544 4679999999999999999999999976431 111122 23457999999999999999999764
No 7
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=97.38 E-value=0.0013 Score=51.07 Aligned_cols=95 Identities=14% Similarity=0.228 Sum_probs=59.8
Q ss_pred EEeeecCCCcCcCCCCceeEEEEEEcCCCeEEEEeCCCCCCHHHHHHHHHH-HHHhhcCc----CCCCCCeeecCCCCCC
Q 027072 89 IFPVNDNDDMSLAEGGSHWSLIVYERNGNVFVHHDSNHRMNKIKARKLFSA-VVGFMGDS----TSASNGKYLDCVDSPQ 163 (228)
Q Consensus 89 ~iPin~n~~~~~~~~~~HW~Llvv~~~~~~i~~~DSl~~~~~~~~~~i~~~-l~~~l~~~----~~~~~~~~v~~~~~pq 163 (228)
--.||.. ....+|.||.-+..++..++++.||+.+=+..+ ++++.+. ...+++.. ...+=.+.+.-...-|
T Consensus 40 ~AIVNTg---~retGGvHWiA~Aw~P~s~~~YmFDPfG~sd~~-L~qiY~F~Y~~llkRSAL~sspdRCv~LvkstqsVQ 115 (204)
T 4ekf_A 40 CAIVNTA---GRETGGVHWMAFAWNPRSKTCYLFEPFGFSDQR-LKQVYQFEYESLLRRSAIASSPDRCITLEKSTQSVQ 115 (204)
T ss_dssp EEEEESC---C----CCCEEEEEEETTTTEEEEECTBTTCSHH-HHHHHHHHHHHHHHHHCC--------EEEECCSBCS
T ss_pred eeEEecC---CcccCceeEEEeEecCCcceEEEeCCCCCCHHH-HHHHhhhhHHHHHHHHhhcCCCCceeEEEecccccc
Confidence 4446653 223479999999999999999999999876643 2333221 11122111 1122345554455666
Q ss_pred CCCCCccHHHHHHHHHHHHHHhhc
Q 027072 164 QTNGYDCGVYVIAIARAICCWYES 187 (228)
Q Consensus 164 Q~n~~DCGvfvl~~~~~l~~~~~~ 187 (228)
=+++-.||+|-|+|+.++.++..+
T Consensus 116 cp~SaACGLFC~lFL~aF~~~p~~ 139 (204)
T 4ekf_A 116 GPNSAAAGLFCCMFLHAFANWPQT 139 (204)
T ss_dssp CTTCCCHHHHHHHHHHHHHHCTTS
T ss_pred CcCchhHHHHHHHHHHHHHhCCCC
Confidence 678999999999999999998655
No 8
>3k8u_A Putative ABC transporter, ATP-binding protein COMA; cysteine protease, quorum-sensing, hydrolase; 1.90A {Streptococcus mutans}
Probab=26.83 E-value=47 Score=23.99 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=17.3
Q ss_pred CCCCCCCCCccHHHHHHHHHHH
Q 027072 160 DSPQQTNGYDCGVYVIAIARAI 181 (228)
Q Consensus 160 ~~pqQ~n~~DCGvfvl~~~~~l 181 (228)
++-.|.+..|||+-.++++-..
T Consensus 7 p~~~Q~~~~dcglacLa~i~~~ 28 (156)
T 3k8u_A 7 KLVPQIDTRDCGPAVLASVAKH 28 (156)
T ss_dssp CCCCCSSTTCHHHHHHHHHHHH
T ss_pred ceEECCCCCCHHHHHHHHHHHH
Confidence 4557889999999999886544
No 9
>4g59_A RAE-1-gamma, retinoic acid early-inducible protein 1-gamma; MHC-I fold, immunoevasion, stress induced ligand, immune SYS; HET: NAG; 2.44A {Mus musculus} PDB: 1jfm_A 1jsk_C
Probab=23.82 E-value=68 Score=24.92 Aligned_cols=26 Identities=8% Similarity=0.105 Sum_probs=22.6
Q ss_pred CCCCceeEEEEEEcCCCeEEEEeCCC
Q 027072 101 AEGGSHWSLIVYERNGNVFVHHDSNH 126 (228)
Q Consensus 101 ~~~~~HW~Llvv~~~~~~i~~~DSl~ 126 (228)
++.|..|.++|-..++..+.+|||-.
T Consensus 18 p~~g~P~f~~vGyVDd~qf~~yDS~~ 43 (205)
T 4g59_A 18 TPADPLWYEAKCLVDEILILHLSNIN 43 (205)
T ss_dssp CSSCCCCEEEEEEETTEEEEEEESSC
T ss_pred CCCCCCeEEEEEEECCEEEEEecCCC
Confidence 44689999999999999999999964
No 10
>1oeg_A Apolipoprotein E; sialic acid, heparin-binding, repeat, signal, disease mutation, polymorphism; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=20.10 E-value=49 Score=16.86 Aligned_cols=17 Identities=18% Similarity=0.368 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHhhh
Q 027072 210 VSQMRKEILQLIKGLME 226 (228)
Q Consensus 210 i~~~R~~i~~~i~~l~~ 226 (228)
+.+||+++-.++-++++
T Consensus 3 ~e~mr~Q~~~lveKvq~ 19 (26)
T 1oeg_A 3 VEDMQRQWAGLVEKVQA 19 (26)
T ss_dssp HHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56788888888877664
Done!