Query 027073
Match_columns 228
No_of_seqs 159 out of 1477
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 04:34:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027073.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027073hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03089 PMM_PGM The phosphoman 100.0 1.3E-49 2.9E-54 365.3 20.3 213 1-226 200-424 (443)
2 PRK09542 manB phosphomannomuta 100.0 1.5E-48 3.4E-53 358.4 20.7 211 1-226 201-423 (445)
3 PLN02371 phosphoglucosamine mu 100.0 9.2E-48 2E-52 362.9 21.3 222 1-226 301-547 (583)
4 PRK15414 phosphomannomutase Cp 100.0 1.5E-46 3.3E-51 346.1 21.8 213 1-226 212-434 (456)
5 PRK14321 glmM phosphoglucosami 100.0 1.1E-46 2.5E-51 346.4 20.9 208 2-226 203-423 (449)
6 cd05803 PGM_like4 This PGM-lik 100.0 9.9E-47 2.2E-51 346.5 18.8 210 1-226 210-429 (445)
7 cd03087 PGM_like1 This archaea 100.0 1.5E-46 3.2E-51 344.7 19.3 209 1-226 201-420 (439)
8 cd05805 MPG1_transferase GTP-m 100.0 6.6E-46 1.4E-50 340.6 21.4 205 6-226 209-422 (441)
9 cd05800 PGM_like2 This PGM-lik 100.0 2.6E-46 5.6E-51 345.0 16.9 212 1-226 210-442 (461)
10 PRK14315 glmM phosphoglucosami 100.0 1.2E-44 2.6E-49 333.0 23.6 201 12-226 221-424 (448)
11 cd03084 phosphohexomutase The 100.0 1.4E-44 2.9E-49 323.5 21.8 187 1-226 149-336 (355)
12 COG1109 {ManB} Phosphomannomut 100.0 1.1E-44 2.3E-49 334.4 21.2 212 1-226 215-438 (464)
13 cd05801 PGM_like3 This bacteri 100.0 6.3E-45 1.4E-49 340.2 19.3 211 1-226 247-502 (522)
14 cd05799 PGM2 This CD includes 100.0 1.6E-44 3.4E-49 335.2 21.4 221 1-226 226-467 (487)
15 PTZ00150 phosphoglucomutase-2- 100.0 1.6E-44 3.4E-49 341.3 21.8 217 1-225 268-544 (584)
16 PRK14324 glmM phosphoglucosami 100.0 6.1E-44 1.3E-48 328.0 23.5 198 13-226 221-421 (446)
17 PRK10887 glmM phosphoglucosami 100.0 8.8E-44 1.9E-48 326.8 23.6 201 12-226 216-420 (443)
18 cd05802 GlmM GlmM is a bacteri 100.0 2E-43 4.2E-48 323.7 24.9 201 12-226 214-418 (434)
19 PRK14314 glmM phosphoglucosami 100.0 1.9E-43 4.2E-48 325.1 24.3 199 12-226 222-426 (450)
20 PRK07564 phosphoglucomutase; V 100.0 4.5E-44 9.8E-49 335.8 19.4 209 2-226 272-517 (543)
21 PRK14316 glmM phosphoglucosami 100.0 1.1E-42 2.3E-47 320.0 24.7 200 13-226 219-422 (448)
22 TIGR01455 glmM phosphoglucosam 100.0 9E-43 1.9E-47 320.1 24.0 199 12-226 217-422 (443)
23 cd03085 PGM1 Phosphoglucomutas 100.0 2.8E-43 6.2E-48 330.0 20.8 210 1-226 246-504 (548)
24 TIGR01132 pgm phosphoglucomuta 100.0 1E-43 2.2E-48 333.4 17.5 210 1-226 264-518 (543)
25 PRK14320 glmM phosphoglucosami 100.0 1.7E-42 3.6E-47 318.3 24.9 199 12-226 217-419 (443)
26 PRK14322 glmM phosphoglucosami 100.0 3E-42 6.4E-47 315.5 23.7 196 12-226 210-408 (429)
27 PRK14318 glmM phosphoglucosami 100.0 2.6E-42 5.6E-47 317.4 23.0 199 12-226 220-424 (448)
28 PRK14323 glmM phosphoglucosami 100.0 2.7E-42 5.8E-47 316.7 22.2 195 12-226 218-416 (440)
29 PRK14317 glmM phosphoglucosami 100.0 7.5E-42 1.6E-46 315.7 24.2 199 12-226 233-441 (465)
30 PRK14319 glmM phosphoglucosami 100.0 1E-41 2.3E-46 312.0 22.5 195 12-226 207-403 (430)
31 PLN02307 phosphoglucomutase 100.0 3.4E-41 7.4E-46 317.0 21.8 210 1-226 263-535 (579)
32 cd03088 ManB ManB is a bacteri 100.0 6.8E-42 1.5E-46 315.5 15.0 210 2-226 201-443 (459)
33 cd03086 PGM3 PGM3 (phosphogluc 100.0 1E-38 2.2E-43 296.8 22.7 207 6-226 229-494 (513)
34 KOG1220 Phosphoglucomutase/pho 100.0 4.2E-36 9.1E-41 273.4 16.1 173 1-174 287-469 (607)
35 PTZ00302 N-acetylglucosamine-p 100.0 1.4E-32 3E-37 257.6 24.2 208 5-226 287-559 (585)
36 PLN02895 phosphoacetylglucosam 100.0 1.5E-32 3.3E-37 255.9 22.2 205 5-226 252-532 (562)
37 PF02880 PGM_PMM_III: Phosphog 100.0 1.4E-28 3E-33 186.4 10.6 112 51-172 1-113 (113)
38 KOG0625 Phosphoglucomutase [Ca 99.9 2E-22 4.3E-27 177.8 13.7 190 1-205 252-448 (558)
39 COG0033 Pgm Phosphoglucomutase 99.9 1.5E-23 3.3E-28 186.3 5.7 210 1-225 243-495 (524)
40 PF02879 PGM_PMM_II: Phosphogl 99.2 9.5E-12 2.1E-16 92.4 5.5 46 1-47 58-104 (104)
41 KOG2537 Phosphoglucomutase/pho 99.2 8.6E-10 1.9E-14 100.4 14.7 180 29-225 279-515 (539)
42 PF00408 PGM_PMM_IV: Phosphogl 98.2 6.4E-07 1.4E-11 62.3 1.9 29 195-226 24-53 (73)
43 TIGR01123 ilvE_II branched-cha 75.1 17 0.00037 31.9 8.0 73 19-106 167-248 (313)
44 PF11576 DUF3236: Protein of u 73.9 4.5 9.7E-05 31.7 3.4 52 2-53 68-124 (154)
45 KOG0344 ATP-dependent RNA heli 65.9 54 0.0012 31.6 9.4 144 40-210 291-443 (593)
46 COG1979 Uncharacterized oxidor 64.1 9.3 0.0002 34.3 3.8 34 1-35 61-94 (384)
47 PRK06732 phosphopantothenate-- 50.7 89 0.0019 26.2 7.6 52 12-63 166-224 (229)
48 COG4019 Uncharacterized protei 48.7 38 0.00083 26.1 4.4 51 2-52 69-124 (156)
49 PRK08868 flagellar protein Fla 47.0 97 0.0021 24.4 6.6 50 13-62 75-130 (144)
50 PRK08452 flagellar protein Fla 46.0 1.2E+02 0.0026 23.2 6.9 50 13-62 57-112 (124)
51 smart00135 LY Low-density lipo 45.5 28 0.00061 20.0 2.8 19 29-47 12-30 (43)
52 TIGR01848 PHA_reg_PhaR polyhyd 44.1 1.3E+02 0.0029 22.4 7.4 71 2-91 6-80 (107)
53 PRK07544 branched-chain amino 43.9 1.6E+02 0.0034 25.4 8.3 69 19-104 169-244 (292)
54 PF03646 FlaG: FlaG protein; 42.4 71 0.0015 23.2 5.1 50 13-62 41-96 (107)
55 PRK06680 D-amino acid aminotra 40.9 97 0.0021 26.7 6.5 69 19-103 160-235 (286)
56 PRK09620 hypothetical protein; 40.3 1.4E+02 0.003 25.1 7.1 52 13-64 161-220 (229)
57 PRK07738 flagellar protein Fla 39.3 1.7E+02 0.0036 22.2 6.8 50 13-62 50-105 (117)
58 PF10879 DUF2674: Protein of u 39.0 18 0.00038 23.6 1.1 17 194-210 16-32 (67)
59 cd01558 D-AAT_like D-Alanine a 38.2 1.5E+02 0.0032 25.1 7.2 70 19-104 153-229 (270)
60 PF05991 NYN_YacP: YacP-like N 36.8 1.7E+02 0.0036 23.2 6.8 21 16-36 33-53 (166)
61 PRK00103 rRNA large subunit me 36.7 76 0.0017 25.2 4.7 30 35-64 65-94 (157)
62 PRK09860 putative alcohol dehy 36.5 57 0.0012 29.6 4.5 33 2-35 65-97 (383)
63 TIGR02114 coaB_strep phosphopa 35.6 1.7E+02 0.0036 24.5 6.9 52 12-63 165-223 (227)
64 PF13433 Peripla_BP_5: Peripla 35.4 25 0.00054 31.9 1.9 97 13-109 55-184 (363)
65 PRK15454 ethanol dehydrogenase 34.8 59 0.0013 29.7 4.3 33 2-35 83-115 (395)
66 COG0079 HisC Histidinol-phosph 34.7 2.8E+02 0.0061 24.9 8.6 46 53-100 85-130 (356)
67 TIGR01122 ilvE_I branched-chai 34.7 2.5E+02 0.0053 24.3 8.1 68 20-103 164-238 (298)
68 TIGR00689 rpiB_lacA_lacB sugar 33.9 88 0.0019 24.5 4.6 62 7-90 35-97 (144)
69 PRK07849 4-amino-4-deoxychoris 33.8 2.4E+02 0.0051 24.4 7.8 70 19-104 170-246 (292)
70 PRK15138 aldehyde reductase; P 32.9 67 0.0014 29.2 4.3 33 2-35 62-94 (387)
71 PRK13356 aminotransferase; Pro 32.2 2.3E+02 0.0051 24.3 7.5 72 17-104 162-240 (286)
72 cd08179 NADPH_BDH NADPH-depend 31.7 75 0.0016 28.6 4.4 33 2-35 58-90 (375)
73 PF01436 NHL: NHL repeat; Int 31.7 82 0.0018 17.0 3.0 18 29-47 5-22 (28)
74 cd08186 Fe-ADH8 Iron-containin 31.4 77 0.0017 28.7 4.5 33 2-35 61-93 (383)
75 PF07676 PD40: WD40-like Beta 30.9 18 0.00039 20.9 0.2 22 23-44 6-27 (39)
76 cd08181 PPD-like 1,3-propanedi 29.5 87 0.0019 28.0 4.4 33 2-35 60-92 (357)
77 PF14272 Gly_rich_SFCGS: Glyci 29.3 47 0.001 24.4 2.1 22 17-38 37-58 (115)
78 PRK06606 branched-chain amino 29.2 2.8E+02 0.0061 24.0 7.6 69 19-103 171-246 (306)
79 cd08185 Fe-ADH1 Iron-containin 29.1 84 0.0018 28.3 4.3 33 2-35 60-92 (380)
80 TIGR01120 rpiB ribose 5-phosph 29.1 1.2E+02 0.0025 23.8 4.5 26 12-37 42-67 (143)
81 PLN02883 Branched-chain amino 29.1 3E+02 0.0064 25.2 7.8 71 19-105 243-322 (384)
82 PF02502 LacAB_rpiB: Ribose/Ga 28.7 70 0.0015 24.9 3.2 57 12-90 42-98 (140)
83 COG1454 EutG Alcohol dehydroge 28.4 94 0.002 28.4 4.4 48 2-61 63-110 (377)
84 PRK05571 ribose-5-phosphate is 27.8 1.3E+02 0.0027 23.8 4.5 26 12-37 44-69 (148)
85 cd01557 BCAT_beta_family BCAT_ 27.8 3.3E+02 0.0072 23.3 7.6 70 19-104 153-230 (279)
86 COG0289 DapB Dihydrodipicolina 27.7 4.1E+02 0.0089 23.1 8.2 76 18-102 18-105 (266)
87 cd08176 LPO Lactadehyde:propan 27.5 99 0.0021 27.9 4.5 33 2-35 62-94 (377)
88 PLN03117 Branched-chain-amino- 27.3 2.5E+02 0.0053 25.3 6.9 69 19-103 210-287 (355)
89 TIGR03577 EF_0830 conserved hy 27.3 51 0.0011 24.2 2.0 22 17-38 37-58 (115)
90 PRK05579 bifunctional phosphop 26.6 2.9E+02 0.0064 25.3 7.4 35 14-48 331-373 (399)
91 cd08178 AAD_C C-terminal alcoh 26.6 1E+02 0.0022 28.1 4.4 33 2-35 55-87 (398)
92 cd06395 PB1_Map2k5 PB1 domain 26.3 73 0.0016 22.6 2.6 25 32-63 46-70 (91)
93 cd03363 TOPRIM_TopoIA_TopoI TO 26.1 2.5E+02 0.0055 21.0 5.9 23 12-36 60-83 (123)
94 cd01559 ADCL_like ADCL_like: 4 25.9 3.9E+02 0.0084 22.2 7.8 68 20-103 136-210 (249)
95 PF06626 DUF1152: Protein of u 25.4 1.6E+02 0.0035 26.0 5.2 34 14-47 105-138 (297)
96 TIGR01119 lacB galactose-6-pho 25.1 1.4E+02 0.0031 24.1 4.5 57 12-90 43-99 (171)
97 PRK12615 galactose-6-phosphate 25.0 1.5E+02 0.0033 23.9 4.6 61 8-90 38-99 (171)
98 cd08193 HVD 5-hydroxyvalerate 24.8 1.1E+02 0.0025 27.4 4.4 32 2-34 60-91 (376)
99 TIGR02638 lactal_redase lactal 24.5 1.2E+02 0.0026 27.4 4.4 33 2-35 63-95 (379)
100 PRK08622 galactose-6-phosphate 24.3 1.6E+02 0.0035 23.8 4.6 61 12-94 43-104 (171)
101 PF12681 Glyoxalase_2: Glyoxal 24.2 1.8E+02 0.0038 20.0 4.5 38 13-50 65-105 (108)
102 cd08358 Glo_EDI_BRP_like_21 Th 24.1 1.7E+02 0.0037 22.1 4.6 18 28-45 110-127 (127)
103 cd08182 HEPD Hydroxyethylphosp 23.9 1.2E+02 0.0025 27.2 4.2 33 2-35 54-86 (367)
104 TIGR00521 coaBC_dfp phosphopan 23.5 2.5E+02 0.0054 25.7 6.3 35 14-48 329-370 (390)
105 PRK02539 hypothetical protein; 23.5 54 0.0012 23.4 1.5 21 38-58 49-69 (85)
106 PRK13982 bifunctional SbtC-lik 23.1 3.9E+02 0.0084 25.3 7.6 53 12-64 398-467 (475)
107 cd08189 Fe-ADH5 Iron-containin 22.7 1.4E+02 0.003 26.9 4.4 33 2-35 60-92 (374)
108 COG4034 Uncharacterized protei 22.6 1.6E+02 0.0034 25.9 4.5 33 15-47 120-152 (328)
109 COG0698 RpiB Ribose 5-phosphat 22.5 1.7E+02 0.0036 23.2 4.3 36 2-37 32-69 (151)
110 cd04607 CBS_pair_NTP_transfera 22.5 2E+02 0.0044 19.9 4.6 32 15-46 13-44 (113)
111 TIGR03884 sel_bind_Methan sele 22.4 1.2E+02 0.0027 21.0 3.1 25 8-34 26-50 (74)
112 cd08190 HOT Hydroxyacid-oxoaci 22.3 1.4E+02 0.003 27.4 4.5 32 2-34 57-88 (414)
113 PRK08638 threonine dehydratase 21.8 4.2E+02 0.0091 23.5 7.3 40 69-108 100-139 (333)
114 cd08180 PDD 1,3-propanediol de 21.7 1.5E+02 0.0032 26.2 4.4 33 2-35 55-87 (332)
115 PF02577 DNase-RNase: Bifuncti 21.6 1.9E+02 0.0041 22.0 4.4 64 29-98 4-74 (135)
116 PTZ00215 ribose 5-phosphate is 21.5 1.9E+02 0.0042 22.8 4.5 57 12-90 47-103 (151)
117 cd07261 Glo_EDI_BRP_like_11 Th 21.5 2.4E+02 0.0051 19.7 4.8 38 13-50 71-110 (114)
118 PRK11761 cysM cysteine synthas 21.5 4.8E+02 0.01 22.6 7.5 30 69-98 88-117 (296)
119 PRK12479 branched-chain amino 21.5 5.1E+02 0.011 22.3 7.7 69 20-104 164-239 (299)
120 cd03362 TOPRIM_TopoIA_TopoIII 21.3 1E+02 0.0023 23.9 3.0 24 11-36 85-109 (151)
121 PRK10665 nitrogen regulatory p 21.2 1.2E+02 0.0026 22.6 3.1 28 194-226 72-104 (112)
122 cd01028 TOPRIM_TopoIA TOPRIM_T 21.2 3.4E+02 0.0075 20.6 5.9 27 9-36 75-101 (142)
123 PRK10624 L-1,2-propanediol oxi 21.1 1.5E+02 0.0033 26.7 4.4 33 2-35 64-96 (382)
124 PRK02991 D-serine dehydratase; 20.7 6.9E+02 0.015 23.2 9.9 40 69-108 182-221 (441)
125 smart00116 CBS Domain in cysta 20.6 1.7E+02 0.0036 16.0 3.6 32 14-45 10-41 (49)
126 PRK08813 threonine dehydratase 20.4 4.9E+02 0.011 23.4 7.5 35 69-103 106-140 (349)
127 PLN02775 Probable dihydrodipic 20.4 5.9E+02 0.013 22.3 8.2 84 17-103 26-117 (286)
128 PF12957 DUF3846: Domain of un 20.3 2.1E+02 0.0045 20.3 4.2 42 3-48 7-49 (95)
129 PF00571 CBS: CBS domain CBS d 20.2 2.2E+02 0.0047 17.2 4.4 33 13-45 16-48 (57)
130 PF02590 SPOUT_MTase: Predicte 20.1 1.3E+02 0.0029 23.7 3.3 31 35-65 65-95 (155)
131 PRK06110 hypothetical protein; 20.1 5.5E+02 0.012 22.4 7.7 34 69-102 95-128 (322)
132 TIGR03405 Phn_Fe-ADH phosphona 20.0 1.7E+02 0.0036 26.2 4.4 32 2-34 55-88 (355)
No 1
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=100.00 E-value=1.3e-49 Score=365.33 Aligned_cols=213 Identities=34% Similarity=0.511 Sum_probs=191.1
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCcEEEEecCCCCeEEEEeCCCccccchhHHHHHHHHHHhhCCCCeEEEcccCCH
Q 027073 1 MFPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSM 80 (228)
Q Consensus 1 ~Fp~~~PnPe~~~~l~~l~~~v~~~~adlgia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~ll~~~~~~~vv~~v~ss~ 80 (228)
+||++.|||+.+++++.+.+.+++.+||+|+++||||||++++|++|+++++|++++|++++++++.+++.||+|++||.
T Consensus 200 ~F~~~~p~p~~~~~l~~l~~~v~~~~adlgia~D~DaDR~~ivd~~G~~l~~d~~~~lla~~ll~~~~~~~vv~~v~ss~ 279 (443)
T cd03089 200 TFPNHHPDPTDPENLEDLIAAVKENGADLGIAFDGDGDRLGVVDEKGEIIWGDRLLALFARDILKRNPGATIVYDVKCSR 279 (443)
T ss_pred CCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecCCcceeEEECCCCcEeCHHHHHHHHHHHHHHHCCCCeEEEecccch
Confidence 59999999998999999999999999999999999999999999999999999999999999999876668999999999
Q ss_pred HHHHHHHHcCCeEEEEecchHHHHHHHhhcCcCCcceeEEeecccceeccC-CCcCCCHHHHHHHHHHHHHHHhhcCCCC
Q 027073 81 ALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKE-NYFLDDGAYMVVKIIIQMVRMKLEGSDE 159 (228)
Q Consensus 81 ~l~~ia~~~g~~v~~t~vG~k~i~~~~~~~~~~~~~~~~g~E~sg~~~~~~-~~~~~Dgi~a~~~ll~e~~a~~~~~~~~ 159 (228)
+++++|+++|+++++|+|||+|++++|.+.+. +||||+|||++|++ +.+++||++++++++ |+++. +++
T Consensus 280 ~~~~ia~~~g~~v~~t~vG~k~v~~~m~~~~~-----~~ggE~sgg~~~~~~~~~~~Dgi~a~l~il-e~la~----~~~ 349 (443)
T cd03089 280 NLYDFIEEAGGKPIMWKTGHSFIKAKMKETGA-----LLAGEMSGHIFFKDRWYGFDDGIYAALRLL-ELLSK----SGK 349 (443)
T ss_pred HHHHHHHHcCCeEEEecCcHHHHHHHHHHhCC-----cEEEeccceEEEcCCcCCCccHHHHHHHHH-HHHHh----cCC
Confidence 99999999999999999999999999998775 89999999999999 999999999999887 99998 899
Q ss_pred CHHHHHHhccccccCceeEEEeccCccchH-HH----------HHHHHHHHhhcccccceeeecCCCCCCceeEEEee
Q 027073 160 GIGSLIKDLEEPLESIELRMNIISEPRYAK-AK----------GSEAIEEFRKYIEVLGLQKTNSHSANETICLIIQT 226 (228)
Q Consensus 160 ~L~~ll~~lp~~~~~~~~~i~~~~~~~~~~-~~----------~~~li~~~r~~~~~gw~lv~~~~ps~~ep~~~~~~ 226 (228)
+|+++++++|++|.....++.|+|+.+..- .+ ..+.+||+|..+++||+|| |||||||++||..
T Consensus 350 ~Lsel~~~~p~~~~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~~~DGiki~~~~~Wvli---RpSgtEP~iriy~ 424 (443)
T cd03089 350 TLSELLADLPKYFSTPEIRIPVTEEDKFAVIERLKEHFEFPGAEIIDIDGVRVDFEDGWGLV---RASNTEPVLVLRF 424 (443)
T ss_pred CHHHHHHhccccCCCCceeccCCchhHHHHHHHHHHHhccccCCeeeecCEEEEECCeeEEE---eecCCCCEEEEEE
Confidence 999999999996655455677887544210 11 1244788999888999999 9999999999964
No 2
>PRK09542 manB phosphomannomutase/phosphoglucomutase; Reviewed
Probab=100.00 E-value=1.5e-48 Score=358.39 Aligned_cols=211 Identities=25% Similarity=0.336 Sum_probs=187.9
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCcEEEEecCCCCeEEEEeCCCccccchhHHHHHHHHHHhhCCCCeEEEcccCCH
Q 027073 1 MFPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSM 80 (228)
Q Consensus 1 ~Fp~~~PnPe~~~~l~~l~~~v~~~~adlgia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~ll~~~~~~~vv~~v~ss~ 80 (228)
+||++.|||+++++++.+.++|++.+||+||++||||||++++|++|+++++|++++|+++++++++++..||+|++||+
T Consensus 201 ~Fp~~~p~P~~~~~l~~l~~~v~~~~adlGia~DgD~DR~~ivd~~G~~l~~d~~~~l~~~~~l~~~~~~~vv~~v~ss~ 280 (445)
T PRK09542 201 TFPNHEANPLDPANLVDLQAFVRETGADIGLAFDGDADRCFVVDERGQPVSPSAVTALVAARELAREPGATIIHNLITSR 280 (445)
T ss_pred CCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEECCCCceEEEECCCCCCccHHHHHHHHHHHHHHHCCCCeEEEeeccch
Confidence 59999999988999999999999999999999999999999999999999999999999999999877778999999999
Q ss_pred HHHHHHHHcCCeEEEEecchHHHHHHHhhcCcCCcceeEEeecccceeccCCCcCCCHHHHHHHHHHHHHHHhhcCCCCC
Q 027073 81 ALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEG 160 (228)
Q Consensus 81 ~l~~ia~~~g~~v~~t~vG~k~i~~~~~~~~~~~~~~~~g~E~sg~~~~~~~~~~~Dgi~a~~~ll~e~~a~~~~~~~~~ 160 (228)
+++++|+++|+++++|+|||+|++++|.+.++ +||||+|||++|+++++++||++++++++ ||++. ++++
T Consensus 281 ~~~~~a~~~g~~~~~t~vG~~~i~~~m~~~~~-----~~ggE~sgg~~f~~~~~~~Dgi~a~~~ll-e~l~~----~~~~ 350 (445)
T PRK09542 281 AVPELVAERGGTPVRTRVGHSFIKALMAETGA-----IFGGEHSAHYYFRDFWGADSGMLAALHVL-AALGE----QDRP 350 (445)
T ss_pred hHHHHHHHcCCeEEEecCcHHHHHHHHHHhCC-----cEEEeeeccEEecCcCCCCcHHHHHHHHH-HHHHh----cCCC
Confidence 99999999999999999999999999998765 89999999999999999999999999887 99987 8999
Q ss_pred HHHHHHhccccccCceeEEEeccCccchH-HH----------HHHHHHHHhhccccc-ceeeecCCCCCCceeEEEee
Q 027073 161 IGSLIKDLEEPLESIELRMNIISEPRYAK-AK----------GSEAIEEFRKYIEVL-GLQKTNSHSANETICLIIQT 226 (228)
Q Consensus 161 L~~ll~~lp~~~~~~~~~i~~~~~~~~~~-~~----------~~~li~~~r~~~~~g-w~lv~~~~ps~~ep~~~~~~ 226 (228)
|+++++++|++|. ..++.|+|..+... .+ ..+.+||+|..++|| |+|| |||||||++||..
T Consensus 351 l~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~DGvki~~~dg~Wvli---RpSgTEP~lriy~ 423 (445)
T PRK09542 351 LSELMADYQRYAA--SGEINSTVADAPARMEAVLKAFADRIVSVDHLDGVTVDLGDGSWFNL---RASNTEPLLRLNV 423 (445)
T ss_pred HHHHHHhhhhcCc--ccceeecCCCHHHHHHHHHHHhhhccCCceecceEEEEecCCcEEEE---EecCCCcEEEEEE
Confidence 9999999887652 45677776443210 11 123467888888776 9999 9999999999975
No 3
>PLN02371 phosphoglucosamine mutase family protein
Probab=100.00 E-value=9.2e-48 Score=362.93 Aligned_cols=222 Identities=56% Similarity=0.795 Sum_probs=190.2
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCcEEEEecCCCCeEEEEeCCCccccchhHHHHHHHHHHhhCCCCeEEEcccCCH
Q 027073 1 MFPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSM 80 (228)
Q Consensus 1 ~Fp~~~PnPe~~~~l~~l~~~v~~~~adlgia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~ll~~~~~~~vv~~v~ss~ 80 (228)
.||++.|||+++++++.+.+.|++.+|||||++||||||++++|++|+++++|++++|+++++++.+++..||+|++||.
T Consensus 301 ~Fp~~~P~P~~~~~l~~l~~~v~~~~aDlGia~DgDaDR~~vvD~~G~~i~gd~l~aLla~~ll~~~~g~~VV~~v~sS~ 380 (583)
T PLN02371 301 MFPNHIPNPEDKAAMSATTQAVLANKADLGIIFDTDVDRSAVVDSSGREINRNRLIALMSAIVLEEHPGTTIVTDSVTSD 380 (583)
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHhcCCCEEEEECCCccceeEECCCCEEECHHHHHHHHHHHHHHhCCCCEEEEecccch
Confidence 59999999999999999999999999999999999999999999999999999999999999999877778999999999
Q ss_pred HHHHHHHHcCCeEEEEecchHHHHHHHhhcCcCCcceeEEeecccceeccCCCcCCCHHHHHHHHHHHHHHHh-hcCCCC
Q 027073 81 ALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMK-LEGSDE 159 (228)
Q Consensus 81 ~l~~ia~~~g~~v~~t~vG~k~i~~~~~~~~~~~~~~~~g~E~sg~~~~~~~~~~~Dgi~a~~~ll~e~~a~~-~~~~~~ 159 (228)
+++++|+++|+++++|+|||+||+++|.+.+..+++++||||+|||++|+++++.+||+++++++| ++++.. .+..++
T Consensus 381 ~l~~ia~~~G~~v~rt~vG~k~v~~~m~~~~~~~~~~~~ggEeSG~~~~~~~~~~dDg~~a~~~il-e~la~~~~~~~~~ 459 (583)
T PLN02371 381 GLTTFIEKKGGKHHRFKRGYKNVIDKGVRLNSDGEETHLMIETSGHGALKENHFLDDGAYLAVKII-IELVRMRAAGAGG 459 (583)
T ss_pred hHHHHHHHcCCeEEEecCchHHHHHHHHHhhccCCceEEEEcccCeEEECCCCCCCcHHHHHHHHH-HHHHHHHhccCCC
Confidence 999999999999999999999999999987644445799999999999999999999999999998 666651 112366
Q ss_pred CHHHHHHhccccccCceeEEEe--c---cCccchH--HHH-------------HHHHHHHhhc----ccccceeeecCCC
Q 027073 160 GIGSLIKDLEEPLESIELRMNI--I---SEPRYAK--AKG-------------SEAIEEFRKY----IEVLGLQKTNSHS 215 (228)
Q Consensus 160 ~L~~ll~~lp~~~~~~~~~i~~--~---~~~~~~~--~~~-------------~~li~~~r~~----~~~gw~lv~~~~p 215 (228)
+|+++++++|+++...+.+.++ + |+.++.+ ++. ...+||+|.. +++||+|| ||
T Consensus 460 ~Lsel~~~lp~~~~~~~~r~~v~~~~~~~~~kg~~v~~~l~~~~~~~~~~~~~~~~~DGvkv~~~~~~~~gWvLi---Rp 536 (583)
T PLN02371 460 GLGDLIEDLEEPLEAVELRLKILDEGKDFKAYGEEVLEHLRNSIESDGKLEGAPVNYEGVRVSDEGEGFGGWFLL---RQ 536 (583)
T ss_pred CHHHHHHhchhccCCceeeecCCccchhHHHHHHHHHHHHHhhhhcccccccCccccceEEEEecccCCCceEEE---Ee
Confidence 7999999999887555666664 3 3221101 111 1346788888 77899999 99
Q ss_pred CCCceeEEEee
Q 027073 216 ANETICLIIQT 226 (228)
Q Consensus 216 s~~ep~~~~~~ 226 (228)
|+|||+|||..
T Consensus 537 S~TEP~iri~~ 547 (583)
T PLN02371 537 SLHDPVIPLNI 547 (583)
T ss_pred CCCCceEEEEE
Confidence 99999999975
No 4
>PRK15414 phosphomannomutase CpsG; Provisional
Probab=100.00 E-value=1.5e-46 Score=346.08 Aligned_cols=213 Identities=23% Similarity=0.346 Sum_probs=182.1
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCcEEEEecCCCCeEEEEeCCCccccchhHHHHHHHHHHhhCCCCeEEEcccCCH
Q 027073 1 MFPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSM 80 (228)
Q Consensus 1 ~Fp~~~PnPe~~~~l~~l~~~v~~~~adlgia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~ll~~~~~~~vv~~v~ss~ 80 (228)
+||++.|||+.+++++.+.++|++.+||+||++||||||++++|++|+++++|++++|+++|++++++++.||.++.||.
T Consensus 212 ~F~~~~p~P~~~~~l~~l~~~v~~~~adlGia~DgDaDR~~~vde~G~~l~~d~~~~l~a~~ll~~~~g~~vv~~~~~s~ 291 (456)
T PRK15414 212 NFPNGIPNPLLPECRDDTRNAVIKHGADMGIAFDGDFDRCFLFDEKGQFIEGYYIVGLLAEAFLEKNPGAKIIHDPRLSW 291 (456)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEECCCcceEEEECCCCCEecHHHHHHHHHHHHHHhCCCCeeccCchhhh
Confidence 49999999998999999999999999999999999999999999999999999999999999999876667999888888
Q ss_pred HHHHHHHHcCCeEEEEecchHHHHHHHhhcCcCCcceeEEeecccceeccCCCcCCCHHHHHHHHHHHHHHHhhcCCCCC
Q 027073 81 ALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEG 160 (228)
Q Consensus 81 ~l~~ia~~~g~~v~~t~vG~k~i~~~~~~~~~~~~~~~~g~E~sg~~~~~~~~~~~Dgi~a~~~ll~e~~a~~~~~~~~~ 160 (228)
.++++++++|+++++|+|||+||+++|.+.+. +||||+|||++|+++.+++||++++++++ |+++. ++++
T Consensus 292 ~l~~~~~~~g~~~~~t~vG~~~i~~~m~~~~~-----~~ggE~sgg~~~~~~~~~~Dgi~a~~~il-e~la~----~~~~ 361 (456)
T PRK15414 292 NTVDVVTAAGGTPVMSKTGHAFIKERMRKEDA-----IYGGEMSAHHYFRDFAYCDSGMIPWLLVA-ELVCL----KGKT 361 (456)
T ss_pred HHHHHHHHcCCEEEEecCcHHHHHHHHHhcCC-----eEEEcccceEEeCCCCCCccHHHHHHHHH-HHHHc----cCCC
Confidence 99999999999999999999999999998765 99999999999999999999999999887 99987 8999
Q ss_pred HHHHHHhccccccC-ceeEE--EeccCccchHHH-------HHHHHHHHhhcccccceeeecCCCCCCceeEEEee
Q 027073 161 IGSLIKDLEEPLES-IELRM--NIISEPRYAKAK-------GSEAIEEFRKYIEVLGLQKTNSHSANETICLIIQT 226 (228)
Q Consensus 161 L~~ll~~lp~~~~~-~~~~i--~~~~~~~~~~~~-------~~~li~~~r~~~~~gw~lv~~~~ps~~ep~~~~~~ 226 (228)
|+++++++++.|.. ...++ .|+|+.++.-.+ ..+.+||+|..++++|++| |||||||++||..
T Consensus 362 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DGvki~~~~~~lll---RpSgTEP~iri~~ 434 (456)
T PRK15414 362 LGELVRDRMAAFPASGEINSKLAQPVEAINRVEQHFSREALAVDRTDGISMTFADWRFNL---RSSNTEPVVRLNV 434 (456)
T ss_pred HHHHHHHHHHhcCCCCccccCCCCHHHHHHHHHHHhccccCcEEecceeEEEeCCceEEE---ecCCCceEEEEEE
Confidence 99999987766632 22322 333321110000 1235788998886556789 9999999999975
No 5
>PRK14321 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=1.1e-46 Score=346.38 Aligned_cols=208 Identities=21% Similarity=0.265 Sum_probs=184.7
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCcEEEEecCCCCeEEEEeCCCccccchhHHHHHHHHHHhhCCCCeEEEcccCCHH
Q 027073 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMA 81 (228)
Q Consensus 2 Fp~~~PnPe~~~~l~~l~~~v~~~~adlgia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~ll~~~~~~~vv~~v~ss~~ 81 (228)
|| +.|+|. +++++.+.+.|++.+||+||++||||||++++|++|+++++|++++|+++++++++++..||+|++||.+
T Consensus 203 f~-~~p~p~-~~~l~~l~~~v~~~~adlGia~DgD~DR~~vvd~~G~~~~~d~~~~l~a~~ll~~~~~~~vV~~v~ss~~ 280 (449)
T PRK14321 203 FV-RELEPN-AKSLSMLAKTVKVLKADVGIAHDGDADRIGVVDDQGNFVEYEVMLSLIAGYMLRKFGKGKIVTTVDAGFA 280 (449)
T ss_pred CC-CCCCCc-hhhHHHHHHHHHHCCCCEEEEecCCCceEEEECCCCCEeChHHHHHHHHHHHHHhCCCCcEEEeccccHH
Confidence 55 468996 8999999999999999999999999999999999999999999999999999997666679999999999
Q ss_pred HHHHHHHcCCeEEEEecchHHHHHHHhhcCcCCcceeEEeecccceeccCCCcCCCHHHHHHHHHHHHHHHhhcCCCCCH
Q 027073 82 LTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGI 161 (228)
Q Consensus 82 l~~ia~~~g~~v~~t~vG~k~i~~~~~~~~~~~~~~~~g~E~sg~~~~~~~~~~~Dgi~a~~~ll~e~~a~~~~~~~~~L 161 (228)
++++|+++|+++++|+|||+||+++|.+.+. +||||+|||++|++|.+++||+++++++| |+++. ++ +|
T Consensus 281 i~~~a~~~g~~v~~t~vG~~~i~~~m~~~~~-----~~ggE~sGg~~~~~~~~~~Dgi~a~~~il-e~la~----~~-~L 349 (449)
T PRK14321 281 LDDYIRPLGGEVIRTRVGDVAVAEELAKHGG-----VFGGEPSGTWIIPQWNLTPDGIFAGALVL-EMIDR----LG-PI 349 (449)
T ss_pred HHHHHHHcCCEEEEEecChHHHHHHHHhhCC-----EEEecCCCCEEeCCcCCCCCHHHHHHHHH-HHHHc----CC-CH
Confidence 9999999999999999999999999998775 99999999999999999999999999888 99987 77 99
Q ss_pred HHHHHhccccccCceeEEEeccCccchH-------------HHHHHHHHHHhhcccccceeeecCCCCCCceeEEEee
Q 027073 162 GSLIKDLEEPLESIELRMNIISEPRYAK-------------AKGSEAIEEFRKYIEVLGLQKTNSHSANETICLIIQT 226 (228)
Q Consensus 162 ~~ll~~lp~~~~~~~~~i~~~~~~~~~~-------------~~~~~li~~~r~~~~~gw~lv~~~~ps~~ep~~~~~~ 226 (228)
+++++++|++|.. ..++.|+|+.+... ...+..+||+|..+++||+|| |||||||++||..
T Consensus 350 s~l~~~~~~~~~~-~~~v~~~~~~k~~~~~~l~~~~~~~~~~~~v~~~DGvkv~~~~~Wvli---RpS~TeP~~riy~ 423 (449)
T PRK14321 350 SELAKEVPRYVTL-RAKIPCPNEKKAKAMEIIAKEALKNFDYERLIDIDGIRIENDDWWILF---RPSGTEPIMRITL 423 (449)
T ss_pred HHHHHhccccccc-cccccCchhhHHHHHHHHHHHhhhhcccCceeecceEEEecCCcEEEE---ecCCCCceEEEEE
Confidence 9999999987754 56788887443210 001345788888888889999 9999999999964
No 6
>cd05803 PGM_like4 This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes. This domain belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=9.9e-47 Score=346.46 Aligned_cols=210 Identities=24% Similarity=0.303 Sum_probs=186.3
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCcEEEEecCCCCeEEEEeCCCccccchhHHHHHHHHHHhh-CCCCeEEEcccCC
Q 027073 1 MFPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKE-HPGTTIVTDARTS 79 (228)
Q Consensus 1 ~Fp~~~PnPe~~~~l~~l~~~v~~~~adlgia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~ll~~-~~~~~vv~~v~ss 79 (228)
.|| +.|+|. +++++.+.+.+++.+||+|+++||||||++++|++|+++++|++++|+++++++. ..+..||+|++||
T Consensus 210 ~F~-~~p~p~-~~~l~~l~~~v~~~~adlgi~~D~DgDR~~ivd~~G~~i~~d~~~al~a~~ll~~~~~~~~vv~~v~ss 287 (445)
T cd05803 210 LFP-HTPEPL-PENLTQLCAAVKESGADVGFAVDPDADRLALVDEDGRPIGEEYTLALAVDYVLKYGGRKGPVVVNLSTS 287 (445)
T ss_pred CCC-CCCCCC-hHHHHHHHHHHHhcCCCEEEeeCCCCceEEEECCCCCCcChHHHHHHHHHHHHHhcCCCCCEEEeccch
Confidence 487 799997 8999999999999999999999999999999999999999999999999999984 3334699999999
Q ss_pred HHHHHHHHHcCCeEEEEecchHHHHHHHhhcCcCCcceeEEeecccceeccCCCcCCCHHHHHHHHHHHHHHHhhcCCCC
Q 027073 80 MALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDE 159 (228)
Q Consensus 80 ~~l~~ia~~~g~~v~~t~vG~k~i~~~~~~~~~~~~~~~~g~E~sg~~~~~~~~~~~Dgi~a~~~ll~e~~a~~~~~~~~ 159 (228)
.+++++|+++|+++++|+|||+|++++|.+.+. +||+|+|||++|+++.+.+||+++++++| |+++. +++
T Consensus 288 ~~i~~ia~~~g~~v~~t~vG~~~i~~~~~~~~~-----~~g~E~sg~~~~~~~~~~~Dgi~a~l~~l-e~la~----~~~ 357 (445)
T cd05803 288 RALEDIARKHGVPVFRSAVGEANVVEKMKEVDA-----VIGGEGNGGVILPDVHYGRDSLVGIALVL-QLLAA----SGK 357 (445)
T ss_pred HHHHHHHHHcCCEEEEecccHHHHHHHHHhcCC-----eEEEeccCCeecCCccccccHHHHHHHHH-HHHHh----cCC
Confidence 999999999999999999999999999998765 89999999999999999999999999888 99998 899
Q ss_pred CHHHHHHhccccccCceeEEEeccCccchH---------HHHHHHHHHHhhcccccceeeecCCCCCCceeEEEee
Q 027073 160 GIGSLIKDLEEPLESIELRMNIISEPRYAK---------AKGSEAIEEFRKYIEVLGLQKTNSHSANETICLIIQT 226 (228)
Q Consensus 160 ~L~~ll~~lp~~~~~~~~~i~~~~~~~~~~---------~~~~~li~~~r~~~~~gw~lv~~~~ps~~ep~~~~~~ 226 (228)
+|+++++++|++|.. ...+.|+|+.++.- ...+..+||+|..+++||+|| |||+|||++||..
T Consensus 358 ~L~~l~~~~~~~~~~-~~~v~~~~~~~~~i~~~l~~~~~~~~v~~~DGik~~~~~~W~li---RpS~teP~~riy~ 429 (445)
T cd05803 358 PLSEIVDELPQYYIS-KTKVTIAGEALERLLKKLEAYFKDAEASTLDGLRLDSEDSWVHV---RPSNTEPIVRIIA 429 (445)
T ss_pred CHHHHHHhchhhhee-eeeeeccHHhHHHHHHHHHHhcccCCcccCceEEEecCCeEEEE---eccCCccEEEEEE
Confidence 999999999987655 46788887543210 001245788999888899999 9999999999974
No 7
>cd03087 PGM_like1 This archaeal PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=1.5e-46 Score=344.74 Aligned_cols=209 Identities=22% Similarity=0.322 Sum_probs=186.4
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCcEEEEecCCCCeEEEEeCCCccccchhHHHHHHHHHHhhCCCCeEEEcccCCH
Q 027073 1 MFPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSM 80 (228)
Q Consensus 1 ~Fp~~~PnPe~~~~l~~l~~~v~~~~adlgia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~ll~~~~~~~vv~~v~ss~ 80 (228)
+||++.|+|. +++++.+.+.+++.+||+|+++||||||++++|++|+++++|++++|+++++++. +++.||.|++||.
T Consensus 201 ~f~~~~p~p~-~~~l~~l~~~v~~~~adlgia~D~DgDR~~~vd~~G~~l~~d~~~~l~a~~ll~~-~~~~vv~~v~ss~ 278 (439)
T cd03087 201 FFPGRPPEPT-PENLSELMELVRATGADLGIAHDGDADRAVFVDEKGRFIDGDKLLALLAKYLLEE-GGGKVVTPVDASM 278 (439)
T ss_pred CCCCCCCCCC-HHHHHHHHHHHHhcCCCEEEEEcCCCceEEEECCCCCEechHHHHHHHHHHHHhc-CCCcEEEeccchH
Confidence 5999999997 8999999999999999999999999999999999999999999999999999987 5568999999999
Q ss_pred HHHHHHHHcCCeEEEEecchHHHHHHHhhcCcCCcceeEEeecccceeccCCCcCCCHHHHHHHHHHHHHHHhhcCCCCC
Q 027073 81 ALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEG 160 (228)
Q Consensus 81 ~l~~ia~~~g~~v~~t~vG~k~i~~~~~~~~~~~~~~~~g~E~sg~~~~~~~~~~~Dgi~a~~~ll~e~~a~~~~~~~~~ 160 (228)
+++++|+++|+++++|+|||+|++++|.+.+. +||||+|||++|+++.+.+||++++++++ |+++. + ++
T Consensus 279 ~l~~~a~~~g~~~~~~~~G~k~i~~~m~~~~~-----~~ggE~sgg~~~~~~~~~~Dgi~a~~~ll-e~l~~----~-~~ 347 (439)
T cd03087 279 LVEDVVEEAGGEVIRTPVGDVHVAEEMIENGA-----VFGGEPNGGWIFPDHQLCRDGIMTAALLL-ELLAE----E-KP 347 (439)
T ss_pred HHHHHHHHcCCEEEEEecChHHHHHHHHhcCC-----eEEecCCCCEecCCcCCcCCHHHHHHHHH-HHHhc----C-CC
Confidence 99999999999999999999999999988654 99999999999999999999999999888 99987 7 99
Q ss_pred HHHHHHhccccccCceeEEEeccCccch-----HH------HHHHHHHHHhhcccccceeeecCCCCCCceeEEEee
Q 027073 161 IGSLIKDLEEPLESIELRMNIISEPRYA-----KA------KGSEAIEEFRKYIEVLGLQKTNSHSANETICLIIQT 226 (228)
Q Consensus 161 L~~ll~~lp~~~~~~~~~i~~~~~~~~~-----~~------~~~~li~~~r~~~~~gw~lv~~~~ps~~ep~~~~~~ 226 (228)
|+++++++|++|.. ..++.|+|+.++. .+ ..++.+||+|..+++||+|| |||||||++||..
T Consensus 348 l~~~~~~~~~~~~~-~~~v~~~~~~~~~i~~~l~~~~~~~~~~i~~~DG~k~~~~~~Wvli---RpS~tep~~rvy~ 420 (439)
T cd03087 348 LSELLDELPKYPLL-REKVECPDEKKEEVMEAVEEELSDADEDVDTIDGVRIEYEDGWVLI---RPSGTEPKIRITA 420 (439)
T ss_pred HHHHHHhccccccc-cccccCChHhHHHHHHHHHHhhhhccCCeeecceEEEecCCcEEEE---eccCCccEEEEEE
Confidence 99999999987754 5577888743321 00 11345778888888899999 9999999999964
No 8
>cd05805 MPG1_transferase GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity. The protein contains an N-terminal NTP transferase domain, an L-beta-H domain, and a C-terminal PGM-like domain that belongs to the alpha-D-phosphohexomutase superfamily. This subfamily is limited to bacteria and archaea. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this group appear to lack conserved residues necessary for metal binding and catalytic activity. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional
Probab=100.00 E-value=6.6e-46 Score=340.64 Aligned_cols=205 Identities=20% Similarity=0.201 Sum_probs=181.1
Q ss_pred CCCCCChhHHHHHHHHHHhcCCcEEEEecCCCCeEEEEeCCCccccchhHHHHHHHHHHhhCCCCeEEEcccCCHHHHHH
Q 027073 6 IPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKF 85 (228)
Q Consensus 6 ~PnPe~~~~l~~l~~~v~~~~adlgia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~ll~~~~~~~vv~~v~ss~~l~~i 85 (228)
.||| .+++++.+.++|++.+||+||++||||||++++|++|++++||++++|+++++++..++..||.|++||.+++++
T Consensus 209 ~~~~-~~~~l~~l~~~v~~~~adlgia~DgDaDR~~vvd~~G~~~~gd~l~~l~a~~ll~~~~~~~vv~~v~ss~~l~~~ 287 (441)
T cd05805 209 TDTE-RQRSLDRLGRIVKALGADFGVIIDPNGERLILVDEAGRVISDDLLTALVSLLVLKSEPGGTVVVPVTAPSVIEQL 287 (441)
T ss_pred CCcc-chhHHHHHHHHHHhCCCCEEEEEcCCCCEEEEECCCCCEEChhHHHHHHHHHHHHhCCCCeEEEEccchHHHHHH
Confidence 3555 589999999999999999999999999999999999999999999999999999865556899999999999999
Q ss_pred HHHcCCeEEEEecchHHHHHHHhhcCcCCcceeEEeecccceeccCCCcCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHH
Q 027073 86 ITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGSLI 165 (228)
Q Consensus 86 a~~~g~~v~~t~vG~k~i~~~~~~~~~~~~~~~~g~E~sg~~~~~~~~~~~Dgi~a~~~ll~e~~a~~~~~~~~~L~~ll 165 (228)
++++|+++++|+|||+|++++|.+ +. +||||+|||++|+++.+++||++++++++ ||++. ++++|++++
T Consensus 288 a~~~g~~~~~t~vG~~~i~~~m~~-~~-----~~ggE~sG~~~~~~~~~~~Dgi~a~l~ll-e~la~----~~~~l~~l~ 356 (441)
T cd05805 288 AERYGGRVIRTKTSPQALMEAALE-NV-----VLAGDGDGGFIFPEFHPGFDAIAALVKIL-EMLAR----TNISLSQIV 356 (441)
T ss_pred HHHcCCEEEEEeCChHHHHHHHHh-cc-----cccccCCCcEEccccccCchHHHHHHHHH-HHHHh----cCCCHHHHH
Confidence 999999999999999999999998 43 89999999999999999999999999887 99998 899999999
Q ss_pred HhccccccCceeEEEeccCccchH-HHH--------HHHHHHHhhcccccceeeecCCCCCCceeEEEee
Q 027073 166 KDLEEPLESIELRMNIISEPRYAK-AKG--------SEAIEEFRKYIEVLGLQKTNSHSANETICLIIQT 226 (228)
Q Consensus 166 ~~lp~~~~~~~~~i~~~~~~~~~~-~~~--------~~li~~~r~~~~~gw~lv~~~~ps~~ep~~~~~~ 226 (228)
+++|++|.. ..++.|+++.++.- .+. ...+||+|..+++||+|| |||||||+|||..
T Consensus 357 ~~l~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~DGvri~~~~gW~li---RpS~TeP~iri~~ 422 (441)
T cd05805 357 DELPRFYVL-HKEVPCPWEAKGRVMRRLIEEAPDKSIELIDGVKIYEDDGWVLV---LPDADEPLCHIYA 422 (441)
T ss_pred HhCchhhee-eeEEECChHHhhHHHHHHHHhcCCCCceecceeEEecCCCEEEE---ecCCCCCEEEEEE
Confidence 999988765 56777876433210 111 234788888888999999 9999999999974
No 9
>cd05800 PGM_like2 This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.
Probab=100.00 E-value=2.6e-46 Score=345.04 Aligned_cols=212 Identities=22% Similarity=0.280 Sum_probs=184.6
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCcEEEEecCCCCeEEEEeCCCccccchhHHHHHHHHHHhhC-CCCeEEEcccCC
Q 027073 1 MFPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEH-PGTTIVTDARTS 79 (228)
Q Consensus 1 ~Fp~~~PnPe~~~~l~~l~~~v~~~~adlgia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~ll~~~-~~~~vv~~v~ss 79 (228)
+||++.|||+ ++++..+.++|++.+||+|+++||||||++++|++|+++++|++++|+++++++.. +++.||+|++||
T Consensus 210 ~F~~~~p~p~-~~~l~~l~~~v~~~~ad~Gia~D~DgDR~~vvd~~G~~l~~d~~~al~a~~ll~~~~~~~~vv~~v~ss 288 (461)
T cd05800 210 LFGGIPPEPI-EKNLGELAEAVKEGGADLGLATDGDADRIGAVDEKGNFLDPNQILALLLDYLLENKGLRGPVVKTVSTT 288 (461)
T ss_pred CCCCCCCCCC-HHHHHHHHHHHHhcCCCEEEEECCCCCeEEEEeCCCceeCHHHHHHHHHHHHHHcCCCCCcEEEEcchH
Confidence 5999999998 89999999999999999999999999999999999999999999999999999873 345799999999
Q ss_pred HHHHHHHHHcCCeEEEEecchHHHHHHHhhcCcCCcceeEEeecccceeccCCCcCCCHHHHHHHHHHHHHHHhhcCCCC
Q 027073 80 MALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDE 159 (228)
Q Consensus 80 ~~l~~ia~~~g~~v~~t~vG~k~i~~~~~~~~~~~~~~~~g~E~sg~~~~~~~~~~~Dgi~a~~~ll~e~~a~~~~~~~~ 159 (228)
++++++++++|+++++|+|||+|++++|.+.+. +||||+|||++|+++++++||++++++++ |+++. +++
T Consensus 289 ~~~~~~a~~~g~~v~~t~~G~~~v~~~~~~~~~-----~~g~E~sg~~~~~~~~~~~Dgi~a~l~il-e~la~----~~~ 358 (461)
T cd05800 289 HLIDRIAEKHGLPVYETPVGFKYIAEKMLEEDV-----LIGGEESGGLGIRGHIPERDGILAGLLLL-EAVAK----TGK 358 (461)
T ss_pred HHHHHHHHHhCCeeeeCCCCHHHHHHHHhhCCe-----EEEEcCcCceeCCCCCCCchHHHHHHHHH-HHHHh----hCC
Confidence 999999999999999999999999999998654 99999999999999999999999999888 99988 899
Q ss_pred CHHHHHHhccccc---cCceeEEEeccCccch-HHHH---------------HHHHHHHhhccccc-ceeeecCCCCCCc
Q 027073 160 GIGSLIKDLEEPL---ESIELRMNIISEPRYA-KAKG---------------SEAIEEFRKYIEVL-GLQKTNSHSANET 219 (228)
Q Consensus 160 ~L~~ll~~lp~~~---~~~~~~i~~~~~~~~~-~~~~---------------~~li~~~r~~~~~g-w~lv~~~~ps~~e 219 (228)
+|+++++++|++| .....++.|+|+.++. -.+. .+.+||+|..+++| |+|| |||+||
T Consensus 359 ~L~~l~~~l~~~~g~~~~~~~~i~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~dGvrv~~~d~~wvlv---RpS~te 435 (461)
T cd05800 359 PLSELVAELEEEYGPSYYDRIDLRLTPAQKEAILEKLKNEPPLSIAGGKVDEVNTIDGVKLVLEDGSWLLI---RPSGTE 435 (461)
T ss_pred CHHHHHHHHHHHhCCCceeecCeecCHHHHHHHHHHHhccCchhhCCceeEEEEecCeEEEEEcCCcEEEE---EcCCCC
Confidence 9999999999854 2235567777643321 0000 12357788877655 9999 999999
Q ss_pred eeEEEee
Q 027073 220 ICLIIQT 226 (228)
Q Consensus 220 p~~~~~~ 226 (228)
|++||..
T Consensus 436 p~iriy~ 442 (461)
T cd05800 436 PLLRIYA 442 (461)
T ss_pred ceEEEEE
Confidence 9999975
No 10
>PRK14315 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=1.2e-44 Score=332.95 Aligned_cols=201 Identities=23% Similarity=0.264 Sum_probs=176.5
Q ss_pred hhHHHHHHHHHHhcCCcEEEEecCCCCeEEEEeCCCccccchhHHHHHHHHHHhhC--CCCeEEEcccCCHHHHHHHHHc
Q 027073 12 KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEH--PGTTIVTDARTSMALTKFITDR 89 (228)
Q Consensus 12 ~~~l~~l~~~v~~~~adlgia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~ll~~~--~~~~vv~~v~ss~~l~~ia~~~ 89 (228)
+++++.+.++|++.+|||||++||||||++++|++|+++++|++++|+++++++.+ ++..||.|++||.+++++|+++
T Consensus 221 ~~~l~~l~~~v~~~~adlGia~DgDgDR~~ivd~~G~~i~~d~~~~l~a~~ll~~~~~~~~~vV~~v~ss~~i~~~a~~~ 300 (448)
T PRK14315 221 STHPEALAKKVREVRADIGIALDGDADRVIIVDEKGHVVDGDQLMALIAESWAEDGRLRGGGIVATVMSNLGLERFLADR 300 (448)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCCceEEEEcCCCcEeCHHHHHHHHHHHHHHhCCCCCCeEEEEecCChHHHHHHHHc
Confidence 46788999999999999999999999999999999999999999999999999865 4568999999999999999999
Q ss_pred CCeEEEEecchHHHHHHHhhcCcCCcceeEEeecccceeccCCCcCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHhcc
Q 027073 90 GGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGSLIKDLE 169 (228)
Q Consensus 90 g~~v~~t~vG~k~i~~~~~~~~~~~~~~~~g~E~sg~~~~~~~~~~~Dgi~a~~~ll~e~~a~~~~~~~~~L~~ll~~lp 169 (228)
|+++++|||||+|++++|.+.+. +||||+|||++|+++.+.+||++++++++ |+++. ++++|+++++++|
T Consensus 301 g~~v~~t~vG~~~i~~~m~~~~~-----~~ggE~sg~~~f~~~~~~~Dgi~a~l~ll-e~la~----~~~~L~~l~~~~~ 370 (448)
T PRK14315 301 GLTLERTAVGDRYVVEHMREGGF-----NLGGEQSGHIVLSDYATTGDGLVAALQVL-AVVVR----SGRPASEVCRRFE 370 (448)
T ss_pred CCeEEEeCChHHHHHHHHHhCCC-----ceeecccccEeecccCCCCcHHHHHHHHH-HHHHH----hCCCHHHHhhhcC
Confidence 99999999999999999998664 89999999999999999999999999888 99998 8999999999999
Q ss_pred ccccCceeEEEeccCccchHHHHHHHHHHHhhcc-cccceeeecCCCCCCceeEEEee
Q 027073 170 EPLESIELRMNIISEPRYAKAKGSEAIEEFRKYI-EVLGLQKTNSHSANETICLIIQT 226 (228)
Q Consensus 170 ~~~~~~~~~i~~~~~~~~~~~~~~~li~~~r~~~-~~gw~lv~~~~ps~~ep~~~~~~ 226 (228)
.++.. ..++.|+.......+...+.+++++..+ ++||+|| |||||||++||..
T Consensus 371 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gWvLi---RpS~teP~iri~~ 424 (448)
T PRK14315 371 PVPQL-LKNVRYSGGKPLEDASVKSAIADAEARLNGSGRLLI---RPSGTEPLIRVMA 424 (448)
T ss_pred cCCee-eeEEecCCcccCCCHHHHHHHHHHHHHhcCCcEEEE---ecCCCCcEEEEEE
Confidence 77654 4577776311111122346788888776 6889999 9999999999974
No 11
>cd03084 phosphohexomutase The alpha-D-phosphohexomutase superfamily includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this family include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). These enzymes play important and diverse roles in carbohydrate metabolism in organisms from bacteria to humans. Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=1.4e-44 Score=323.51 Aligned_cols=187 Identities=24% Similarity=0.262 Sum_probs=171.4
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCcEEEEecCCCCeEEEEeCCCccccchhHHHHHHHHHHhh-CCCCeEEEcccCC
Q 027073 1 MFPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKE-HPGTTIVTDARTS 79 (228)
Q Consensus 1 ~Fp~~~PnPe~~~~l~~l~~~v~~~~adlgia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~ll~~-~~~~~vv~~v~ss 79 (228)
.||++.|||..+++++.+.+.|++.+||+|+++||||||++++|++|+++++|++++|+++++++. .++..||+|+.||
T Consensus 149 ~F~~~~p~p~~~~~l~~l~~~v~~~~adlG~a~DgDgDRl~~vd~~G~~l~~d~~~al~~~~l~~~~~~~~~vv~~v~ss 228 (355)
T cd03084 149 NFGNINPDPGSETNLKQLLAVVKAEKADFGVAFDGDADRLIVVDENGGFLDGDELLALLAVELFLTFNPRGGVVKTVVSS 228 (355)
T ss_pred CCCCCCCCCCchhhHHHHHHHHHhcCCCEEEEEcCCCceeEEECCCCceeCHhHHHHHHHHHHHHhcCCCCCEEEEccch
Confidence 488999999889999999999999999999999999999999999999999999999999999965 3456799999999
Q ss_pred HHHHHHHHHcCCeEEEEecchHHHHHHHhhcCcCCcceeEEeecccceeccCCCcCCCHHHHHHHHHHHHHHHhhcCCCC
Q 027073 80 MALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDE 159 (228)
Q Consensus 80 ~~l~~ia~~~g~~v~~t~vG~k~i~~~~~~~~~~~~~~~~g~E~sg~~~~~~~~~~~Dgi~a~~~ll~e~~a~~~~~~~~ 159 (228)
.+++++|+++|+++++||||++|++++|.+.++ +||||+|||++|+++.+++|||+++++++ |+++. +++
T Consensus 229 ~~i~~ia~~~g~~v~~t~~G~~~i~~~m~~~~~-----~~ggE~sg~~~~~~~~~~~Dgi~a~l~~l-e~la~----~~~ 298 (355)
T cd03084 229 GALDKVAKKLGIKVIRTKTGFKWVGEAMQEGDV-----VLGGEESGGVIFPEFHPGRDGISAALLLL-EILAN----LGK 298 (355)
T ss_pred HHHHHHHHHcCCcEEEecCcHHHHHHHHHhcCc-----eEEecCcCCEEECCcCCCCCHHHHHHHHH-HHHHH----hCC
Confidence 999999999999999999999999999998654 89999999999999999999999999888 99998 799
Q ss_pred CHHHHHHhccccccCceeEEEeccCccchHHHHHHHHHHHhhcccccceeeecCCCCCCceeEEEee
Q 027073 160 GIGSLIKDLEEPLESIELRMNIISEPRYAKAKGSEAIEEFRKYIEVLGLQKTNSHSANETICLIIQT 226 (228)
Q Consensus 160 ~L~~ll~~lp~~~~~~~~~i~~~~~~~~~~~~~~~li~~~r~~~~~gw~lv~~~~ps~~ep~~~~~~ 226 (228)
+|+++++++|++|... . +++ ||+|| |||+|||++||..
T Consensus 299 ~Ls~l~~~~p~~~~~~-~--~v~-----------------------gW~li---rps~tep~~ri~~ 336 (355)
T cd03084 299 SLSELFSELPRYYYIR-L--KVR-----------------------GWVLV---RASGTEPAIRIYA 336 (355)
T ss_pred CHHHHHHHhhHhcccc-c--ccc-----------------------eEEEE---ecCCCCcEEEEEE
Confidence 9999999999876431 2 111 89999 9999999999964
No 12
>COG1109 {ManB} Phosphomannomutase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-44 Score=334.44 Aligned_cols=212 Identities=26% Similarity=0.398 Sum_probs=184.4
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCcEEEEecCCCCeEEEEeCCCccccchhHHHHHHHHHHhhCCCCeEEEcccCCH
Q 027073 1 MFPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSM 80 (228)
Q Consensus 1 ~Fp~~~PnPe~~~~l~~l~~~v~~~~adlgia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~ll~~~~~~~vv~~v~ss~ 80 (228)
+||++.|||+.++.+ .+.+.+++.+||+|+||||||||++++|++|++++||++++|++.|+++......||.|++||.
T Consensus 215 ~fp~~~p~p~~~~~~-~l~~~v~~~~aDlgia~DgDaDR~~~vd~~G~~~~Gd~i~~lla~~l~~~~~~~~vV~tv~ss~ 293 (464)
T COG1109 215 LFPNINPNPGETELL-DLAKAVKEHGADLGIAFDGDADRLIVVDERGNFVDGDQILALLAKYLLEKGKLPTVVTTVMSSL 293 (464)
T ss_pred CCCCCCCCCCCccHH-HHHHHHHhcCCCEEEEecCCCceEEEEcCCCCEeCccHHHHHHHHHHHhcCCCCeEEEecccch
Confidence 599988999855544 8999999989999999999999999999999999999999999999999754337999999999
Q ss_pred HHHHHHHHcCCeEEEEecchHHHHHHHhhcCcCCcceeEEeecccceeccCCCcCCCHHHHHHHHHHHHHHHhhcCCCCC
Q 027073 81 ALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEG 160 (228)
Q Consensus 81 ~l~~ia~~~g~~v~~t~vG~k~i~~~~~~~~~~~~~~~~g~E~sg~~~~~~~~~~~Dgi~a~~~ll~e~~a~~~~~~~~~ 160 (228)
.++++++.+|+++++|+|||+||+++|++.++ +||||+|||++|+++.+++||++++++++ +|++. ++++
T Consensus 294 ~~~~i~~~~g~~~~~t~vG~~~i~~~~~~~~~-----~~g~E~sg~~~~~~~~~~~Dgi~aal~il-el~~~----~~~~ 363 (464)
T COG1109 294 ALEKIAKKLGGKVVRTKVGDKYIAEKMRENGA-----VFGGEESGHIIFPDHVRTGDGLLAALLVL-ELLAE----SGKS 363 (464)
T ss_pred hHHHHHHHcCCeEEEecCchHHHHHHHHhcCC-----eEEEcccCCEEECCCCcCCcHHHHHHHHH-HHHHH----hCCC
Confidence 99999999999999999999999999999887 89999999999999999999999999877 99987 6889
Q ss_pred HHHHHHh-ccccccCceeEEEeccCccc-h-H-------H-HHHHHHHHHhhcccccce-eeecCCCCCCceeEEEee
Q 027073 161 IGSLIKD-LEEPLESIELRMNIISEPRY-A-K-------A-KGSEAIEEFRKYIEVLGL-QKTNSHSANETICLIIQT 226 (228)
Q Consensus 161 L~~ll~~-lp~~~~~~~~~i~~~~~~~~-~-~-------~-~~~~li~~~r~~~~~gw~-lv~~~~ps~~ep~~~~~~ 226 (228)
|++++.. +|++|.+.+.++.|..+.+. . . . .....+|++|..+++||. +| |||||||+|||..
T Consensus 364 lsel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~idgv~~~~~~g~~~lv---RpSGTEP~lrvy~ 438 (464)
T COG1109 364 LSELLAELLPKYPQSVEINVRVTDEGKAEVLEKLLEELREAKKVDTIDGVKVELEDGGRVLV---RPSGTEPLIRVYV 438 (464)
T ss_pred HHHHHHhhccccCCcceEeEEEccchhhhHHHHHHHhCcccceeeeeeeEEEEeCCCcEEEE---EeCCCceEEEEEE
Confidence 9999999 99887646788888754331 0 0 0 012345778889999987 99 9999999999863
No 13
>cd05801 PGM_like3 This bacterial PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=6.3e-45 Score=340.20 Aligned_cols=211 Identities=16% Similarity=0.144 Sum_probs=176.2
Q ss_pred CCCCCCC--------CCCChhHHHHHHHHHHhcCCcEEEEecCCCCeEEEEeCCCccccchhHHHHHHHHHHhhCC----
Q 027073 1 MFPNHIP--------NPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHP---- 68 (228)
Q Consensus 1 ~Fp~~~P--------nPe~~~~l~~l~~~v~~~~adlgia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~ll~~~~---- 68 (228)
+||+++| ||+.+++++.+.+. ..+||+||++||||||++++|++|+++++|++++|+++++++.++
T Consensus 247 ~f~~~~p~~~~~~~~~p~~~~~l~~l~~~--~~~adlGia~DgDaDRl~vvd~~G~~l~gd~~~aLla~~ll~~~~~~~~ 324 (522)
T cd05801 247 TFRFMTLDHDGKIRMDCSSPYAMAGLLKL--KDKFDLAFANDPDADRHGIVTPSAGLMNPNHYLSVAIDYLFTHRPLWNK 324 (522)
T ss_pred CCCCCCCCcccCCCCCCCCHHHHHHHHHh--hcCCCEEEEECCCccceeEEecCCeEECHHHHHHHHHHHHHHhCcccCC
Confidence 3676555 45567888888876 348999999999999999999999999999999999999998754
Q ss_pred CCeEEEcccCCHHHHHHHHHcCCeEEEEecchHHHHHHHhhcCcCCcceeEEeecccceeccC-----CCcCCCHHHHHH
Q 027073 69 GTTIVTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKE-----NYFLDDGAYMVV 143 (228)
Q Consensus 69 ~~~vv~~v~ss~~l~~ia~~~g~~v~~t~vG~k~i~~~~~~~~~~~~~~~~g~E~sg~~~~~~-----~~~~~Dgi~a~~ 143 (228)
+..|+.+++||++++++|+++|+++++|+||||||.++|.+... +||||+|||++|++ +.+++||+++++
T Consensus 325 ~~~vv~tv~sS~~l~~ia~~~g~~~~~t~vG~k~i~~~m~~~~~-----~~ggEeSgg~~~~~~~~~~~~~~~Dgi~a~l 399 (522)
T cd05801 325 SAGVGKTLVSSSMIDRVAAALGRKLYEVPVGFKWFVDGLLDGSL-----GFGGEESAGASFLRRDGTVWTTDKDGIIMCL 399 (522)
T ss_pred CceEEEEcchHHHHHHHHHHcCCeeeecCccHHHHHHHHhcCCe-----EEEEeccCceEeccCCCCCcccCchHHHHHH
Confidence 45799999999999999999999999999999999999998653 89999999999987 789999999999
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHhccccc-cCcee--EEEeccCccchHHHH-------------------------HHH
Q 027073 144 KIIIQMVRMKLEGSDEGIGSLIKDLEEPL-ESIEL--RMNIISEPRYAKAKG-------------------------SEA 195 (228)
Q Consensus 144 ~ll~e~~a~~~~~~~~~L~~ll~~lp~~~-~~~~~--~i~~~~~~~~~~~~~-------------------------~~l 195 (228)
+++ |+++. ++++|+++++++|++| .+.+. ++.|+|+.+..-.+. .+.
T Consensus 400 ~~l-e~la~----~~~~L~~~l~~l~~~~g~~~~~~~~v~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (522)
T cd05801 400 LAA-EILAV----TGKDPGQLYQELTERFGEPYYARIDAPATPEQKARLKKLSPEQVTATELAGDPILAKLTRAPGNGAS 474 (522)
T ss_pred HHH-HHHHH----hCCCHHHHHHHHHHHHCcCeeeccCCCChHHHHHHHHHHhccCCCchHhCCCceEEEEecccCCCcc
Confidence 887 99988 8999999999999777 33333 444444222100000 013
Q ss_pred HHHHhhcccccceeeecCCCCCCceeEEEee
Q 027073 196 IEEFRKYIEVLGLQKTNSHSANETICLIIQT 226 (228)
Q Consensus 196 i~~~r~~~~~gw~lv~~~~ps~~ep~~~~~~ 226 (228)
+||+|..+++||+|| |||||||++||..
T Consensus 475 ~DGvk~~~~~gWvli---RpSgTEP~iriy~ 502 (522)
T cd05801 475 IGGLKVTTANGWFAA---RPSGTEDVYKIYA 502 (522)
T ss_pred CceEEEEEcCeEEEE---EccCCCceEEEEE
Confidence 788998888999999 9999999999974
No 14
>cd05799 PGM2 This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/ph
Probab=100.00 E-value=1.6e-44 Score=335.24 Aligned_cols=221 Identities=19% Similarity=0.183 Sum_probs=184.3
Q ss_pred CCCC-CCCCCCChhHHHHHHHHHHhcCCcEEEEecCCCCeEEEEeC----CCccccchhHHHHHHHHHHhhC-------C
Q 027073 1 MFPN-HIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDN----KGNPINGDKLIALMSAIVLKEH-------P 68 (228)
Q Consensus 1 ~Fp~-~~PnPe~~~~l~~l~~~v~~~~adlgia~D~DgDR~~vvd~----~G~~l~~d~~~~Ll~~~ll~~~-------~ 68 (228)
+||+ +.|||+.+++++.+.+.|++.+||+|+++||||||++++|+ +|+++++|++++|+++++++.+ +
T Consensus 226 ~F~~~~~p~p~~~~~l~~l~~~v~~~~ad~Gia~D~DgDR~~vvd~~~~~~g~~~~~d~l~aL~a~~ll~~~~~~~~~~~ 305 (487)
T cd05799 226 DFPTVKFPNPEEPGALDLAIELAKKVGADLILATDPDADRLGVAVKDKDGEWRLLTGNEIGALLADYLLEQRKEKGKLPK 305 (487)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCCCeEEEEEEcCCCCEEEECHHHHHHHHHHHHHHhHhhccCCCC
Confidence 4898 78999989999999999999999999999999999999995 4899999999999999999875 4
Q ss_pred CCeEEEcccCCHHHHHHHHHcCCeEEEEecchHHHHHHHhhcCcCCcceeEEeecccceeccCCCcCCCHHHHHHHHHHH
Q 027073 69 GTTIVTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQ 148 (228)
Q Consensus 69 ~~~vv~~v~ss~~l~~ia~~~g~~v~~t~vG~k~i~~~~~~~~~~~~~~~~g~E~sg~~~~~~~~~~~Dgi~a~~~ll~e 148 (228)
+..||+|++||.+++++|+++|+++++|+|||+|++++|.+....+.+++||||+|||++|+++.+.+||++++++++ |
T Consensus 306 ~~~vV~~v~sS~~i~~ia~~~g~~v~~t~~G~~~i~~~m~~~~~~~~~~~~ggE~sgg~~~~~~~~~~Dgi~a~~~ll-e 384 (487)
T cd05799 306 NPVIVKTIVSSELLRKIAKKYGVKVEETLTGFKWIGNKIEELESGGKKFLFGFEESIGYLVGPFVRDKDGISAAALLA-E 384 (487)
T ss_pred CcEEEEeehhHHHHHHHHHHcCCeEEECCCCchHHHHHHHHHhccCceEEEEEeccceeeeCCCCCCchHHHHHHHHH-H
Confidence 446999999999999999999999999999999999999976433334699999999999999999999999999887 9
Q ss_pred HHHHhhcCCCCCHHHHHHhcccccc---CceeEEEeccCccchH-HHHHH-HH---HHHhhccccc-ceeeecCCCCCCc
Q 027073 149 MVRMKLEGSDEGIGSLIKDLEEPLE---SIELRMNIISEPRYAK-AKGSE-AI---EEFRKYIEVL-GLQKTNSHSANET 219 (228)
Q Consensus 149 ~~a~~~~~~~~~L~~ll~~lp~~~~---~~~~~i~~~~~~~~~~-~~~~~-li---~~~r~~~~~g-w~lv~~~~ps~~e 219 (228)
|++. .+.++++|+++++++|++|. .....+.|+.+....+ ++..+ +. ||+|..+++| |+|| |||+||
T Consensus 385 ~la~-~~~~~~~Ls~l~~~l~~~y~~~~~~~~~i~~~~~~~~~~~~~v~~~l~~~~DGvki~~~dg~Wvli---RpS~te 460 (487)
T cd05799 385 MAAY-LKAQGKTLLDRLDELYEKYGYYKEKTISITFEGKEGPEKIKAIMDRLRNNPNVLTFYLEDGSRVTV---RPSGTE 460 (487)
T ss_pred HHHH-HHHcCCCHHHHHHHHHHHhCceEEeeeeEEEeCCCCHHHHHHHHHHHhccCCEEEEEEcCCEEEEE---EcCCCC
Confidence 9985 23378999999999998762 2223466631111111 22221 22 5888888885 9999 999999
Q ss_pred eeEEEee
Q 027073 220 ICLIIQT 226 (228)
Q Consensus 220 p~~~~~~ 226 (228)
|++||..
T Consensus 461 P~~riy~ 467 (487)
T cd05799 461 PKIKFYI 467 (487)
T ss_pred ceEEEEE
Confidence 9999975
No 15
>PTZ00150 phosphoglucomutase-2-like protein; Provisional
Probab=100.00 E-value=1.6e-44 Score=341.30 Aligned_cols=217 Identities=18% Similarity=0.167 Sum_probs=179.3
Q ss_pred CCCC-CCCCCCC-hhHHHHHHHHHHhcCCcEEEEecCCCCeEEEEeCCC---ccccchhHHHHHHHHHHhhCC-------
Q 027073 1 MFPN-HIPNPED-KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKG---NPINGDKLIALMSAIVLKEHP------- 68 (228)
Q Consensus 1 ~Fp~-~~PnPe~-~~~l~~l~~~v~~~~adlgia~D~DgDR~~vvd~~G---~~l~~d~~~~Ll~~~ll~~~~------- 68 (228)
+||+ +.|||++ +++++.+.+.+++.+||+|||+||||||++++|+.| ++++||++++|+++|+++.++
T Consensus 268 ~Fp~~~~PnPe~~~~~l~~~~~~v~~~~adlgia~DpDaDR~~vvd~~g~~~~~l~gd~l~aLla~~ll~~~~~~g~~~~ 347 (584)
T PTZ00150 268 EFPTVTFPNPEEGKGALKLSMETAEAHGSTVVLANDPDADRLAVAEKLNNGWKIFTGNELGALLAWWAMKRYRRQGIDKS 347 (584)
T ss_pred CCCCCCCcChhhhHHHHHHHHHHHHHhCCCEEEEeCCCCCceEEEEEcCCceEEcChhHHHHHHHHHHHHhhhhcCCCCC
Confidence 5898 6899997 899999999999999999999999999999998765 899999999999999998742
Q ss_pred CCeEEEcccCCHHHHHHHHHcCCeEEEEecchHHHHHHHhhcCcCCc-ceeEEeecccceeccCCCcCCCHHHHHHHHHH
Q 027073 69 GTTIVTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGI-ETHLMMETSGHGALKENYFLDDGAYMVVKIII 147 (228)
Q Consensus 69 ~~~vv~~v~ss~~l~~ia~~~g~~v~~t~vG~k~i~~~~~~~~~~~~-~~~~g~E~sg~~~~~~~~~~~Dgi~a~~~ll~ 147 (228)
+..||.|++||.+++++|+++|+++++|+||||||+++|.+.+..+. .++||||||||++|+++.+++||++++++++
T Consensus 348 ~~~Vv~tv~sS~~l~~ia~~~g~~v~~t~tGfk~I~~~m~~~~~~~~~~~~~ggEeSgG~~~~~~~~~kDgi~aal~il- 426 (584)
T PTZ00150 348 KCFFICTVVSSRMLKKMAEKEGFQYDETLTGFKWIGNKAIELNAENGLTTLFAYEEAIGFMLGTRVRDKDGVTAAAVVA- 426 (584)
T ss_pred CcEEEEehhhhHHHHHHHHHcCCEEEECCCChHHHHHHHHHHHhcCCceEEEEEeccCcccCCCCCCCcHHHHHHHHHH-
Confidence 23599999999999999999999999999999999999987432222 3699999999999999999999999999877
Q ss_pred HHHHHhhcCCCCCHHHHHHhccccccCce-eEEEeccCccchHHHHHHHHHHHhh-------------------------
Q 027073 148 QMVRMKLEGSDEGIGSLIKDLEEPLESIE-LRMNIISEPRYAKAKGSEAIEEFRK------------------------- 201 (228)
Q Consensus 148 e~~a~~~~~~~~~L~~ll~~lp~~~~~~~-~~i~~~~~~~~~~~~~~~li~~~r~------------------------- 201 (228)
||+++ ++.+|+||++++++||+.|..+. .+.... .. ..+++.++|+.+|.
T Consensus 427 e~~~~-l~~~g~sL~e~l~~l~~~~G~~~~~~~~~~-~~--~~~~~~~~~~~l~~~~~~~~~~~g~~v~~~~d~~~~~~~ 502 (584)
T PTZ00150 427 EMALY-LYERGKTLVEHLESLYKQYGYHFTNNSYYI-CY--DPSRIVSIFNDIRNNGSYPTKLGGYPVTRIRDLTTGYDT 502 (584)
T ss_pred HHHHH-HHHcCCCHHHHHHHHHHHHCCCccceeeEe-cC--CHHHHHHHHHHHhccCCcchhhCCeeEEEEEeccccccc
Confidence 99653 44589999999999999995322 222221 11 12222345555554
Q ss_pred --------------------ccccc-ceeeecCCCCCCceeEEEe
Q 027073 202 --------------------YIEVL-GLQKTNSHSANETICLIIQ 225 (228)
Q Consensus 202 --------------------~~~~g-w~lv~~~~ps~~ep~~~~~ 225 (228)
.+++| |+++ |||||||+||+-
T Consensus 503 ~~~~~~~~lp~~~~~~~lk~~~~~g~~~~~---RpSGTEPkik~Y 544 (584)
T PTZ00150 503 ATPDGKPLLPVSASTQMITFYFENGAIITI---RGSGTEPKLKWY 544 (584)
T ss_pred ccCCCcccCCCcccCCeEEEEEcCCeEEEE---EcCCCCCeEEEE
Confidence 45677 9999 999999999985
No 16
>PRK14324 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=6.1e-44 Score=328.02 Aligned_cols=198 Identities=19% Similarity=0.208 Sum_probs=166.2
Q ss_pred hHHHHHHHHHHhcCCcEEEEecCCCCeEEEEeCCCccccchhHHHHHHHHHHhhC--CCCeEEEcccCCHHHHHHHHHcC
Q 027073 13 TAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEH--PGTTIVTDARTSMALTKFITDRG 90 (228)
Q Consensus 13 ~~l~~l~~~v~~~~adlgia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~ll~~~--~~~~vv~~v~ss~~l~~ia~~~g 90 (228)
.+++.+.+.|++.+|||||++||||||++++|++|+++++|++++|+++++++.+ ++..||+|++||.+++++++++|
T Consensus 221 ~~~e~l~~~v~~~~adlGia~DgDgDR~~vvd~~G~~l~~d~~~~l~a~~ll~~~~~~~~~VV~~v~ss~~l~~ia~~~g 300 (446)
T PRK14324 221 LHPENLAQEVKRYRADIGFAFDGDADRLVVVDEKGEIVHGDKLLGVLAVYLKEKGALKSQAIVATVMSNLALEEYLKKHG 300 (446)
T ss_pred CCHHHHHHHHHhCCCCEEEEECCCCceEEEECCCCCEeCHHHHHHHHHHHHHHhCCCCCCeEEEEecCChHHHHHHHHcC
Confidence 3566688999999999999999999999999999999999999999999999875 45589999999999999999999
Q ss_pred CeEEEEecchHHHHHHHhhcCcCCcceeEEeecccceeccCCCcCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHhccc
Q 027073 91 GNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGSLIKDLEE 170 (228)
Q Consensus 91 ~~v~~t~vG~k~i~~~~~~~~~~~~~~~~g~E~sg~~~~~~~~~~~Dgi~a~~~ll~e~~a~~~~~~~~~L~~ll~~lp~ 170 (228)
+++++|+|||+||+++|.+.+. +||||+|||++|++|.+++||++++++++ |+++. ++++|+++++++|.
T Consensus 301 ~~v~~t~vG~~~i~~~m~~~~~-----~~ggE~sG~~~~~~~~~~~Dgi~a~l~ll-e~la~----~~~~ls~l~~~~~~ 370 (446)
T PRK14324 301 IELKRCNVGDKYVLECMKENGI-----NFGGEQSGHIIFSDYAKTGDGLVSALQVS-ALMLE----SKKKASEALNPFEL 370 (446)
T ss_pred CeEEEeCChHHHHHHHHHhcCC-----EEEEcCcccEEecCcCCCCcHHHHHHHHH-HHHHH----cCCCHHHHHHhhhh
Confidence 9999999999999999998765 89999999999999999999999999888 99988 89999999999997
Q ss_pred cccCceeEEEeccCccchHHHHHHHHHHHhhccccc-ceeeecCCCCCCceeEEEee
Q 027073 171 PLESIELRMNIISEPRYAKAKGSEAIEEFRKYIEVL-GLQKTNSHSANETICLIIQT 226 (228)
Q Consensus 171 ~~~~~~~~i~~~~~~~~~~~~~~~li~~~r~~~~~g-w~lv~~~~ps~~ep~~~~~~ 226 (228)
++. ...++.+....+ ..+...+-..++....|| |+|| |||||||+|||..
T Consensus 371 ~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~dg~~~lv---R~SgTEp~irv~~ 421 (446)
T PRK14324 371 YPQ-LLVNLKVQEKKP--LEKIKGLKELLKELEKLGIRHLI---RYSGTENKLRILL 421 (446)
T ss_pred cCc-eeEEEeeCCccc--cccCHHHHHHHHHHhcCCcEEEE---ecCCCCceEEEEE
Confidence 543 244555542111 111111111122233778 8999 9999999999974
No 17
>PRK10887 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=8.8e-44 Score=326.78 Aligned_cols=201 Identities=21% Similarity=0.219 Sum_probs=173.2
Q ss_pred hhHHHHHHHHHHhcCCcEEEEecCCCCeEEEEeCCCccccchhHHHHHHHHHHhhCC-CCeEEEcccCCHHHHHHHHHcC
Q 027073 12 KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHP-GTTIVTDARTSMALTKFITDRG 90 (228)
Q Consensus 12 ~~~l~~l~~~v~~~~adlgia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~ll~~~~-~~~vv~~v~ss~~l~~ia~~~g 90 (228)
+++++.+.+.|++.+||+|+++||||||++++|++|+++++|++++|+++++++.++ ...||.|++||.+++++|+++|
T Consensus 216 ~~~l~~l~~~v~~~~adlGia~D~DgDRl~~vd~~G~~i~~d~l~~l~~~~ll~~~~~~~~vv~~v~ss~~~~~~a~~~g 295 (443)
T PRK10887 216 ATDPEALQAAVLAEKADLGIAFDGDGDRVIMVDHLGNLVDGDQLLYIIARDRLRRGQLRGGVVGTLMSNMGLELALKQLG 295 (443)
T ss_pred CCCHHHHHHHHHhcCCCeeeEECCCCceEEEECCCCcEeCHHHHHHHHHHHHHHhCCCCCcEEEEeccchHHHHHHHHcC
Confidence 468999999999999999999999999999999999999999999999999998864 4479999999999999999999
Q ss_pred CeEEEEecchHHHHHHHhhcCcCCcceeEEeecccceeccCCCcCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHhccc
Q 027073 91 GNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGSLIKDLEE 170 (228)
Q Consensus 91 ~~v~~t~vG~k~i~~~~~~~~~~~~~~~~g~E~sg~~~~~~~~~~~Dgi~a~~~ll~e~~a~~~~~~~~~L~~ll~~lp~ 170 (228)
+++++|||||+|++++|.+.+. +||||+|||++|+++++.+||+++++++| |+++. ++++|+|+++++|.
T Consensus 296 ~~v~~t~vG~~~i~~~m~~~~~-----~~ggE~sg~~~~~~~~~~~Dgi~a~l~il-e~la~----~~~~Ls~l~~~~~~ 365 (443)
T PRK10887 296 IPFVRAKVGDRYVLEKLQEKGW-----RLGGENSGHILCLDKTTTGDGIVAALQVL-AAMVR----SGMSLADLCSGMKL 365 (443)
T ss_pred CcEEEcCCchHHHHHHHHhcCc-----EEEEecccceeccCccccCcHHHHHHHHH-HHHHH----hCCCHHHHHhhccc
Confidence 9999999999999999988765 89999999999999999999999999888 99988 89999999999998
Q ss_pred cccCceeEEEeccCccch-H-HHHHHHHHHHhhcc-cccceeeecCCCCCCceeEEEee
Q 027073 171 PLESIELRMNIISEPRYA-K-AKGSEAIEEFRKYI-EVLGLQKTNSHSANETICLIIQT 226 (228)
Q Consensus 171 ~~~~~~~~i~~~~~~~~~-~-~~~~~li~~~r~~~-~~gw~lv~~~~ps~~ep~~~~~~ 226 (228)
+|.. ..+++|+.+.... + +.+.+.++...... ++||+|| |||||||++||..
T Consensus 366 ~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgWvLi---RpS~tEP~iri~~ 420 (443)
T PRK10887 366 FPQV-LINVRFKPGADDPLESEAVKAALAEVEAELGGRGRVLL---RKSGTEPLIRVMV 420 (443)
T ss_pred ccce-EEEEEeccccccccchHHHHHHHHHHHHHhCCCeEEEE---ecCCCCeEEEEEE
Confidence 7654 5688887321111 1 22223444433322 5789999 9999999999974
No 18
>cd05802 GlmM GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of UDP-N-acetylglucosamine, an essential precursor to components of the cell envelope. In order to be active, GlmM must be phosphorylated, which can occur via autophosphorylation or by the Ser/Thr kinase StkP. GlmM functions in a classical ping-pong bi-bi mechanism with glucosamine-1,6-diphosphate as an intermediate. Other members of the alpha-D-phosphohexomutase superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=2e-43 Score=323.71 Aligned_cols=201 Identities=23% Similarity=0.324 Sum_probs=174.4
Q ss_pred hhHHHHHHHHHHhcCCcEEEEecCCCCeEEEEeCCCccccchhHHHHHHHHHHhhC--CCCeEEEcccCCHHHHHHHHHc
Q 027073 12 KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEH--PGTTIVTDARTSMALTKFITDR 89 (228)
Q Consensus 12 ~~~l~~l~~~v~~~~adlgia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~ll~~~--~~~~vv~~v~ss~~l~~ia~~~ 89 (228)
+++++.+.+.|++.+||+|+++||||||++++|++|+++++|++++|+++++++.. ++..||.|++||.+++++++++
T Consensus 214 ~~~~~~l~~~v~~~~adlGia~DgDgDR~~~vd~~G~~i~~d~~~~l~a~~l~~~~~~~~~~vv~~v~ss~~~~~~~~~~ 293 (434)
T cd05802 214 STHPESLQKAVLENGADLGIAFDGDADRVIAVDEKGNIVDGDQILAICARDLKERGRLKGNTVVGTVMSNLGLEKALKEL 293 (434)
T ss_pred ccCHHHHHHHHHhcCCCEEEEEcCCCceEEEECCCCCEeCHHHHHHHHHHHHHHhCCCCCCeEEEecCCcHHHHHHHHHc
Confidence 46788899999999999999999999999999999999999999999999999875 4568999999999999999999
Q ss_pred CCeEEEEecchHHHHHHHhhcCcCCcceeEEeecccceeccCCCcCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHhcc
Q 027073 90 GGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGSLIKDLE 169 (228)
Q Consensus 90 g~~v~~t~vG~k~i~~~~~~~~~~~~~~~~g~E~sg~~~~~~~~~~~Dgi~a~~~ll~e~~a~~~~~~~~~L~~ll~~lp 169 (228)
|+++++|||||+|++++|.+.+. +||||+|||++|+++++.+||++++++++ |+++. ++++|++++++||
T Consensus 294 g~~v~~~~~G~~~i~~~~~~~~~-----~~ggE~sG~~~f~~~~~~~Dgi~a~l~ll-e~la~----~~~~ls~l~~~l~ 363 (434)
T cd05802 294 GIKLVRTKVGDRYVLEEMLKHGA-----NLGGEQSGHIIFLDHSTTGDGLLTALQLL-AIMKR----SGKSLSELASDMK 363 (434)
T ss_pred CCeEEEEcChHHHHHHHHHhcCC-----EEEEecCCCEEecCcCCCCcHHHHHHHHH-HHHHH----hCCCHHHHHhhcc
Confidence 99999999999999999998775 89999999999999999999999999888 99988 8999999999998
Q ss_pred ccccCceeEEEeccCccc-hHHHHHHHHHHHhhcc-cccceeeecCCCCCCceeEEEee
Q 027073 170 EPLESIELRMNIISEPRY-AKAKGSEAIEEFRKYI-EVLGLQKTNSHSANETICLIIQT 226 (228)
Q Consensus 170 ~~~~~~~~~i~~~~~~~~-~~~~~~~li~~~r~~~-~~gw~lv~~~~ps~~ep~~~~~~ 226 (228)
.++.. ..++++..+.+. ..+...+.+++++..+ .+||+|| |||||||++||..
T Consensus 364 ~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gW~li---RpS~tep~irv~~ 418 (434)
T cd05802 364 LYPQV-LVNVRVKDKKALLENPRVQAAIAEAEKELGGEGRVLV---RPSGTEPLIRVMV 418 (434)
T ss_pred ccCee-eEEEEeCCccccccCHHHHHHHHHHHHhhCCCeEEEE---ecCCCCcEEEEEE
Confidence 77543 344444322111 1122446788888777 4789999 9999999999974
No 19
>PRK14314 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=1.9e-43 Score=325.07 Aligned_cols=199 Identities=23% Similarity=0.295 Sum_probs=172.4
Q ss_pred hhHHHHHHHHHHhcCCcEEEEecCCCCeEEEEeCCCccccchhHHHHHHHHHHhhC--CCCeEEEcccCCHHHHHHHHHc
Q 027073 12 KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEH--PGTTIVTDARTSMALTKFITDR 89 (228)
Q Consensus 12 ~~~l~~l~~~v~~~~adlgia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~ll~~~--~~~~vv~~v~ss~~l~~ia~~~ 89 (228)
+++++.+.+.|++.+||+|+++||||||++++|++|+++++|++++|+++++++.+ ++..||+|++||.+++++|+++
T Consensus 222 ~~~~~~l~~~v~~~~adlGia~DgDgDR~~~vd~~G~~i~~d~~~al~~~~ll~~~~~~~~~vv~~v~ss~~~~~ia~~~ 301 (450)
T PRK14314 222 SLHPEVIAKAVIEHGADLGIALDGDADRLIVVDEKGHIVDGDQIMAICATDLKKRGALPKNTLVATVMSNMGLEVAMKEL 301 (450)
T ss_pred CCCHHHHHHHHHhcCCCeEEEEcCCCceEEEECCCCcCcCHHHHHHHHHHHHHHhcCCCCCEEEEeccCChHHHHHHHHc
Confidence 35566789999999999999999999999999999999999999999999999873 4557999999999999999999
Q ss_pred CCeEEEEecchHHHHHHHhhcCcCCcceeEEeecccceeccCCCcCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHhcc
Q 027073 90 GGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGSLIKDLE 169 (228)
Q Consensus 90 g~~v~~t~vG~k~i~~~~~~~~~~~~~~~~g~E~sg~~~~~~~~~~~Dgi~a~~~ll~e~~a~~~~~~~~~L~~ll~~lp 169 (228)
|+++++|||||+|++++|.+.++ +||||+|||++|+++.+.+||++++++++ |+++. ++++|+++++++|
T Consensus 302 g~~v~~t~vG~~~i~~~m~~~~~-----~~ggE~sg~~~~~~~~~~~Dgi~a~l~~l-e~la~----~~~~Ls~l~~~~~ 371 (450)
T PRK14314 302 GGQVLRTPVGDRYVVEEMRRGGA-----NLGGEQSGHLIFLDHNTTGDGILSALQVL-RIMIE----SGKPLSELAGLLE 371 (450)
T ss_pred CCEEEEeCChHHHHHHHHHhcCC-----EEEEeCcccEEEeCCCCCCcHHHHHHHHH-HHHHH----hCCCHHHHHhhhh
Confidence 99999999999999999998775 99999999999999999999999999888 99998 8999999999777
Q ss_pred ccccCceeEEEeccCccch---HHHHHHHHHHHhhcc-cccceeeecCCCCCCceeEEEee
Q 027073 170 EPLESIELRMNIISEPRYA---KAKGSEAIEEFRKYI-EVLGLQKTNSHSANETICLIIQT 226 (228)
Q Consensus 170 ~~~~~~~~~i~~~~~~~~~---~~~~~~li~~~r~~~-~~gw~lv~~~~ps~~ep~~~~~~ 226 (228)
.++. ...+|+|..+.. .++..+.+++++... ++||+|| |||+|||++||..
T Consensus 372 ~~p~---~~~~~~~~~k~~~~~~~~~~~~i~~v~~~~~~~gWvLi---RpS~tEP~iri~~ 426 (450)
T PRK14314 372 PFPQ---ALINVRVKEKIPLETLPEVAKAIKDVEEALGDSGRVLL---RYSGTENLCRVMV 426 (450)
T ss_pred hcCc---cceEeEeCCcCccccHHHHHHHHHHHHhhhCCCcEEEE---ecCCCCcEEEEEE
Confidence 5432 233566644321 133345678887766 5789999 9999999999974
No 20
>PRK07564 phosphoglucomutase; Validated
Probab=100.00 E-value=4.5e-44 Score=335.76 Aligned_cols=209 Identities=18% Similarity=0.146 Sum_probs=172.6
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCcEEEEecCCCCeEEEEeCCCccccchhHHHHHHHHHHhhCC----CCeEEEccc
Q 027073 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHP----GTTIVTDAR 77 (228)
Q Consensus 2 Fp~~~PnPe~~~~l~~l~~~v~~~~adlgia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~ll~~~~----~~~vv~~v~ 77 (228)
||+++|||+.+++++.+.+ ++.+||+|+++||||||++++|+ |+++++|++++|+++|++++.+ +..||.|++
T Consensus 272 ~~~~~p~P~~~~~L~~l~~--~~~~adlGia~DgDgDRl~vvd~-G~~i~~d~~~alla~~ll~~~~~~~~~~~Vv~~v~ 348 (543)
T PRK07564 272 DGKIRMDCSSPYAMAGLLA--LKDAFDLAFANDPDGDRHGIVTP-GGLMNPNHYLAVAIAYLFHHRPGWRAGAGVGKTLV 348 (543)
T ss_pred cCCcCCCCChHHHHHHHHh--hccCCCEEEEECCCCCceeEEec-CeeechhHHHHHHHHHHHHhCcCCCCCceEEEEec
Confidence 5678899988888776665 57899999999999999999999 9999999999999999987532 337999999
Q ss_pred CCHHHHHHHHHcCCeEEEEecchHHHHHHHhhcCcCCcceeEEeecccceeccC-----CCcCCCHHHHHHHHHHHHHHH
Q 027073 78 TSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKE-----NYFLDDGAYMVVKIIIQMVRM 152 (228)
Q Consensus 78 ss~~l~~ia~~~g~~v~~t~vG~k~i~~~~~~~~~~~~~~~~g~E~sg~~~~~~-----~~~~~Dgi~a~~~ll~e~~a~ 152 (228)
||.+++++|+++|+++++|+|||+||+++|.+.+ ++||||||||++|.. +.+++||++++++++ |+++.
T Consensus 349 sS~~l~~ia~~~g~~v~~t~vG~k~i~~~m~~~~-----~~~ggEeSgg~~~~~~~~~~~~~~~Dgi~a~l~il-e~la~ 422 (543)
T PRK07564 349 SSAMIDRVAAKLGRKLYEVPVGFKWFVNGLDDGS-----LGFGGEESAGASFLRRDGSVWTTDKDGLIAVLLAA-EILAV 422 (543)
T ss_pred chHHHHHHHHHhCCeeeecchHHHHHHHHHhcCc-----eEEEecCcCCeeecccCCCCccccchHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999999999865 499999999996643 688999999999887 99998
Q ss_pred hhcCCCCCHHHHHHhccccccC-ceeEEE--eccCccchHHHH------------------H-------HHHHHHhhccc
Q 027073 153 KLEGSDEGIGSLIKDLEEPLES-IELRMN--IISEPRYAKAKG------------------S-------EAIEEFRKYIE 204 (228)
Q Consensus 153 ~~~~~~~~L~~ll~~lp~~~~~-~~~~i~--~~~~~~~~~~~~------------------~-------~li~~~r~~~~ 204 (228)
++++|++++++||++|.. ++.+++ |+|+.+..-.+. . +.+||+|..++
T Consensus 423 ----~~~~L~ell~~l~~~~g~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DGlki~~~ 498 (543)
T PRK07564 423 ----TGKSPSEIYRELWARFGRPYYSRHDAPATPEQKAALRKLSPELVGATELAGDPIDASLTEAPGNGAAIGGLKVVTE 498 (543)
T ss_pred ----hCCCHHHHHHHHHHHhCCceEEEecCCccHHHHHHHHHHhccCCCchhhCCcceEEEEecCcCCcccCCeEEEEEc
Confidence 899999999999986632 233443 444322100001 0 12568888888
Q ss_pred ccceeeecCCCCCCceeEEEee
Q 027073 205 VLGLQKTNSHSANETICLIIQT 226 (228)
Q Consensus 205 ~gw~lv~~~~ps~~ep~~~~~~ 226 (228)
+||+|| |||||||++||..
T Consensus 499 ~gWvlv---RpSgTEP~iriy~ 517 (543)
T PRK07564 499 NGWFAA---RPSGTETTYKIYA 517 (543)
T ss_pred CCEEEE---EccCCCCeEEEEE
Confidence 999999 9999999999864
No 21
>PRK14316 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=1.1e-42 Score=319.96 Aligned_cols=200 Identities=21% Similarity=0.285 Sum_probs=169.9
Q ss_pred hHHHHHHHHHHhcCCcEEEEecCCCCeEEEEeCCCccccchhHHHHHHHHHHhhC--CCCeEEEcccCCHHHHHHHHHcC
Q 027073 13 TAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEH--PGTTIVTDARTSMALTKFITDRG 90 (228)
Q Consensus 13 ~~l~~l~~~v~~~~adlgia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~ll~~~--~~~~vv~~v~ss~~l~~ia~~~g 90 (228)
++++.+.+.|++.+||+|+++||||||++++|++|+++++|++++|+++++++.+ ++..||.|++||.+++++++++|
T Consensus 219 ~~~~~l~~~v~~~~adlGia~DgDaDR~~~vd~~G~~i~~d~~~~l~a~~ll~~~~~~~~~vv~~v~ss~~~~~~~~~~g 298 (448)
T PRK14316 219 THPEALQELVVEKGADLGLAFDGDADRLIAVDENGNIVDGDKIMFICGKYLKEKGRLKKNTIVTTVMSNLGFYKALEEEG 298 (448)
T ss_pred CCHHHHHHHHhhcCCCEEEEEcCCCceEEEECCCCCEeCHHHHHHHHHHHHHHhCCCCCCeEEEeccCchHHHHHHHHcC
Confidence 4566789999999999999999999999999999999999999999999999875 44579999999999999999999
Q ss_pred CeEEEEecchHHHHHHHhhcCcCCcceeEEeecccceeccCCCcCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHhccc
Q 027073 91 GNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGSLIKDLEE 170 (228)
Q Consensus 91 ~~v~~t~vG~k~i~~~~~~~~~~~~~~~~g~E~sg~~~~~~~~~~~Dgi~a~~~ll~e~~a~~~~~~~~~L~~ll~~lp~ 170 (228)
+++++|||||+|++++|.+.+. +||||+|||++|+++.+.+||++++++++ |+++. ++++|+++++++|.
T Consensus 299 ~~v~~~~vG~~~i~~~m~~~~~-----~~ggE~sG~~~f~~~~~~~Dgi~a~l~il-e~l~~----~~~~ls~l~~~~~~ 368 (448)
T PRK14316 299 INSVKTKVGDRYVVEEMRKGGY-----NLGGEQSGHIIFLDYNTTGDGLLTALQLA-KVMKE----TGKKLSELAAEMKK 368 (448)
T ss_pred CeEEEeCChHHHHHHHHHhcCC-----eEEEcCcccEEecccCCCCcHHHHHHHHH-HHHHH----hCCCHHHHHhhhhh
Confidence 9999999999999999998765 89999999999999999999999999887 99987 89999999999865
Q ss_pred cccCceeEEEeccCccc-hHHHHHHHHHHHhhcc-cccceeeecCCCCCCceeEEEee
Q 027073 171 PLESIELRMNIISEPRY-AKAKGSEAIEEFRKYI-EVLGLQKTNSHSANETICLIIQT 226 (228)
Q Consensus 171 ~~~~~~~~i~~~~~~~~-~~~~~~~li~~~r~~~-~~gw~lv~~~~ps~~ep~~~~~~ 226 (228)
++.. ..++.+....+- ...+..+.+++++... ++||+|| |||||||++||..
T Consensus 369 ~p~~-~~~~~v~~k~~~~~~~~~~~~i~~i~~~~~~~gw~li---RpS~TEP~irvy~ 422 (448)
T PRK14316 369 YPQK-LVNVRVTDKKKAMENPEIKEIIEKVEEEMAGNGRVLV---RPSGTEPLVRVMA 422 (448)
T ss_pred cCcc-eEEeEeCCccccccCHHHHHHHHHHHHHhCCCceEEE---ecCCCCcEEEEEE
Confidence 4322 334444321110 0133346778777655 6789999 9999999999974
No 22
>TIGR01455 glmM phosphoglucosamine mutase. This model describes GlmM, phosphoglucosamine mutase, also designated in MrsA and YhbF E. coli, UreC in Helicobacter pylori, and femR315 or FemD in Staphlococcus aureus. It converts glucosamine-6-phosphate to glucosamine-1-phosphate as part of the pathway toward UDP-N-acetylglucosamine for peptidoglycan and lipopolysaccharides.
Probab=100.00 E-value=9e-43 Score=320.09 Aligned_cols=199 Identities=21% Similarity=0.271 Sum_probs=170.2
Q ss_pred hhHHHHHHHHHHhcCCcEEEEecCCCCeEEEEeCCCccccchhHHHHHHHHHHhhC--CCCeEEEcccCCHHHHHHHHHc
Q 027073 12 KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEH--PGTTIVTDARTSMALTKFITDR 89 (228)
Q Consensus 12 ~~~l~~l~~~v~~~~adlgia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~ll~~~--~~~~vv~~v~ss~~l~~ia~~~ 89 (228)
+++++.+.+.|++.+||+|+++||||||++++|++|+++++|++++|+++++++.. ++..||.|++||.+++++|+++
T Consensus 217 ~~~l~~l~~~v~~~~adlGia~DgD~DR~~~vd~~G~~l~~d~~~al~a~~ll~~~~~~~~~vv~~v~ss~~l~~~a~~~ 296 (443)
T TIGR01455 217 STHLDALQKAVREHGADLGIAFDGDADRVLAVDANGRIVDGDQILYIIARALKESGELAGNTVVATVMSNLGLERALEKL 296 (443)
T ss_pred CCCHHHHHHHHhhcCCCEEEEEcCCCceEEEECCCCcEeCHHHHHHHHHHHHHHhcCCCCCcEEEEccCCHHHHHHHHHc
Confidence 46889999999999999999999999999999999999999999999999999873 3447999999999999999999
Q ss_pred CCeEEEEecchHHHHHHHhhcCcCCcceeEEeecccceeccCCCcCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHhcc
Q 027073 90 GGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGSLIKDLE 169 (228)
Q Consensus 90 g~~v~~t~vG~k~i~~~~~~~~~~~~~~~~g~E~sg~~~~~~~~~~~Dgi~a~~~ll~e~~a~~~~~~~~~L~~ll~~lp 169 (228)
|+++++|+|||+|++++|.+.+. +||||+|||++|+++.+.+||++++++++ |+++. ++++|+++++++|
T Consensus 297 g~~v~~t~vG~~~i~~~m~~~~~-----~~ggE~sG~~~~~~~~~~~Dgi~a~l~il-e~la~----~~~~l~~l~~~~~ 366 (443)
T TIGR01455 297 GLTLIRTAVGDRYVLEEMRESGY-----NLGGEQSGHIILLDYSTTGDGIVSALQVL-TIMKK----SGSTLSELAAEFV 366 (443)
T ss_pred CCeEEEeCChHHHHHHHHHhcCC-----EEEEcCcceEEecCCCcCCcHHHHHHHHH-HHHHH----hCCCHHHHHhhcc
Confidence 99999999999999999998765 99999999999999999999999999888 99988 8999999999999
Q ss_pred ccccCceeEEEeccCc-cchH---HHHHHHHHHHhhc-ccccceeeecCCCCCCceeEEEee
Q 027073 170 EPLESIELRMNIISEP-RYAK---AKGSEAIEEFRKY-IEVLGLQKTNSHSANETICLIIQT 226 (228)
Q Consensus 170 ~~~~~~~~~i~~~~~~-~~~~---~~~~~li~~~r~~-~~~gw~lv~~~~ps~~ep~~~~~~ 226 (228)
.+| +.+++|+|+. +... +.+...++..... ..+||+|| |||||||++||..
T Consensus 367 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gW~Li---RpS~teP~irv~~ 422 (443)
T TIGR01455 367 PYP---QTLVNVRVADRKLAAAEAPAVKAAIEDAEAELGGTGRILL---RPSGTEPLIRVMV 422 (443)
T ss_pred ccC---eeeeeEEecccccccccCHHHHHHHHHHHHHhCCCcEEEE---ecCCCCceEEEEE
Confidence 765 4556777654 2111 1122233332221 24689999 9999999999974
No 23
>cd03085 PGM1 Phosphoglucomutase 1 (PGM1) catalyzes the bidirectional interconversion of glucose-1-phosphate (G-1-P) and glucose-6-phosphate (G-6-P) via a glucose 1,6-diphosphate intermediate, an important metabolic step in prokaryotes and eukaryotes. In one direction, G-1-P produced from sucrose catabolism is converted to G-6-P, the first intermediate in glycolysis. In the other direction, conversion of G-6-P to G-1-P generates a substrate for synthesis of UDP-glucose which is required for synthesis of a variety of cellular constituents including cell wall polymers and glycoproteins. The PGM1 family also includes a non-enzymatic PGM-related protein (PGM-RP) thought to play a structural role in eukaryotes, as well as pp63/parafusin, a phosphoglycoprotein that plays an important role in calcium-regulated exocytosis in ciliated protozoans. PGM1 belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl t
Probab=100.00 E-value=2.8e-43 Score=330.03 Aligned_cols=210 Identities=15% Similarity=0.092 Sum_probs=175.1
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCcEEEEecCCCCeEEEEeCCCccccchhHHHHHHHHHHhh----CCC-CeEEEc
Q 027073 1 MFPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKE----HPG-TTIVTD 75 (228)
Q Consensus 1 ~Fp~~~PnPe~~~~l~~l~~~v~~~~adlgia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~ll~~----~~~-~~vv~~ 75 (228)
+||++.|||+ ++++..+.+.|++.+||+|||+||||||++++|+ |+++.+++++++++.++++. .++ ..||.|
T Consensus 246 ~Fp~~~P~P~-~~~l~~L~~~V~~~~ADlGia~DgDaDRl~vvd~-G~~i~~d~~lall~~~ll~~~~~~~~~~~~VV~t 323 (548)
T cd03085 246 DFGGGHPDPN-LTYAKDLVELMKSGEPDFGAASDGDGDRNMILGK-GFFVTPSDSVAVIAANAKLIPYFYKGGLKGVARS 323 (548)
T ss_pred CCCCCCCCCc-HHHHHHHHHHHhccCCCEEEEECCCCCceEEEec-CEEecCCHHHHHHHHHHHHhhhhhhcCCcEEEEe
Confidence 5999999998 8999999999999999999999999999999999 99999999999999998853 122 479999
Q ss_pred ccCCHHHHHHHHHcCCeEEEEecchHHHHHHHhhcCcCCcceeEEeecccceeccCCCcCCCHHHHHHHHHHHHHHHhhc
Q 027073 76 ARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLE 155 (228)
Q Consensus 76 v~ss~~l~~ia~~~g~~v~~t~vG~k~i~~~~~~~~~~~~~~~~g~E~sg~~~~~~~~~~~Dgi~a~~~ll~e~~a~~~~ 155 (228)
++||.+++++|+++|+++++|+||||||.+.|.+... +||||||||++ +++.+++||++++++++ ||++.
T Consensus 324 v~sS~~le~ia~~~G~~v~~t~vG~k~I~~~m~~~~~-----~~GgEeSgg~~-~~~~~~kDGi~aal~ll-ella~--- 393 (548)
T cd03085 324 MPTSGALDRVAKKLGIPLFETPTGWKFFGNLMDAGKL-----SLCGEESFGTG-SDHIREKDGLWAVLAWL-SILAH--- 393 (548)
T ss_pred CccHHHHHHHHHHcCCcEEEcCchHHHHHHHHhcCCc-----eEEEeccCCcc-CCCccCCcHHHHHHHHH-HHHHH---
Confidence 9999999999999999999999999999999998653 89999999986 88999999999999887 99998
Q ss_pred CCCCCHHHHHHhccccccCce-eEEE---eccCccchH-HHH-----------------------------------HHH
Q 027073 156 GSDEGIGSLIKDLEEPLESIE-LRMN---IISEPRYAK-AKG-----------------------------------SEA 195 (228)
Q Consensus 156 ~~~~~L~~ll~~lp~~~~~~~-~~i~---~~~~~~~~~-~~~-----------------------------------~~l 195 (228)
+|+||++++++||+.|.... .+.. |+|+.++.- .+. +..
T Consensus 394 -~g~tLsell~~i~~~~G~~~~~~~~~~~~~~~~k~~im~~l~~~~~~~~~~~~~~~~~~~v~~~~d~~~~~~~~~~~~~ 472 (548)
T cd03085 394 -RNVSVEDIVKEHWQKYGRNFYTRYDYEEVDSEAANKMMDHLRALVSDLPGVGKSGDKGYKVAKADDFSYTDPVDGSVSK 472 (548)
T ss_pred -HCcCHHHHHHHHHHHhCcceeecccccCCCHHHHHHHHHHHHhccccCccccccccCCceEEEEecceeccCCCCCcCh
Confidence 89999999999997773222 3322 444322100 000 112
Q ss_pred HHHHhhccccc-ceeeecCCCCCCc---eeEEEee
Q 027073 196 IEEFRKYIEVL-GLQKTNSHSANET---ICLIIQT 226 (228)
Q Consensus 196 i~~~r~~~~~g-w~lv~~~~ps~~e---p~~~~~~ 226 (228)
++++|..+++| |+++ |||||| |+||+-.
T Consensus 473 ~dglk~~~~~g~wi~i---RpSGTE~~~Pkir~Y~ 504 (548)
T cd03085 473 KQGLRIIFEDGSRIIF---RLSGTGSSGATIRLYI 504 (548)
T ss_pred hceEEEEECCCeEEEE---ECCCCCCCCceEEEEE
Confidence 34555666666 9999 999999 8999853
No 24
>TIGR01132 pgm phosphoglucomutase, alpha-D-glucose phosphate-specific. This enzyme interconverts alpha-D-glucose-1-P and alpha-D-glucose-6-P.
Probab=100.00 E-value=1e-43 Score=333.44 Aligned_cols=210 Identities=17% Similarity=0.169 Sum_probs=171.9
Q ss_pred CCCCCCCCCC--------ChhHHHHHHHHHHhcCCcEEEEecCCCCeEEEEeCCCccccchhHHHHHHHHHHhhCC---C
Q 027073 1 MFPNHIPNPE--------DKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHP---G 69 (228)
Q Consensus 1 ~Fp~~~PnPe--------~~~~l~~l~~~v~~~~adlgia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~ll~~~~---~ 69 (228)
+||+++|+|+ .+++++.+.+ ++.+||+||++||||||++++|++| ++++|++++|+++++++.++ +
T Consensus 264 ~f~~~~pd~~~~~~~~~~~~e~l~~l~~--~~~~aDlGia~DgDaDR~~vvd~~g-~i~gd~~~aLla~~ll~~~~~~~~ 340 (543)
T TIGR01132 264 TFRFMTLDKDGKIRMDCSSPYAMAGLLA--LRDKYDLAFGNDPDYDRHGIVTPAG-LMNPNHYLAVAINYLFQHRPQWGG 340 (543)
T ss_pred CCCCCCCCcccccCCCCCCHHHHHHHhh--cccCCCEEEEeCCCCCCeeEEecCc-eeCHHHHHHHHHHHHHHhCcccCC
Confidence 4777666432 2466766665 5889999999999999999999995 69999999999999998753 3
Q ss_pred -CeEEEcccCCHHHHHHHHHcCCeEEEEecchHHHHHHHhhcCcCCcceeEEeecccceeccC-----CCcCCCHHHHHH
Q 027073 70 -TTIVTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKE-----NYFLDDGAYMVV 143 (228)
Q Consensus 70 -~~vv~~v~ss~~l~~ia~~~g~~v~~t~vG~k~i~~~~~~~~~~~~~~~~g~E~sg~~~~~~-----~~~~~Dgi~a~~ 143 (228)
..|+++++||.+++++|+++|+++++|+|||+||+++|.+.+. +||||+|||++|+. +.+++||+++++
T Consensus 341 ~~~Vv~tv~sS~~l~~ia~~~g~~v~~t~vG~k~i~~~m~~~~~-----~~ggEeSgg~~~~~~~~~~~~~~~Dgi~a~l 415 (543)
T TIGR01132 341 DVAVGKTLVSSAMIDRVVADLGRQLVEVPVGFKWFVDGLFDGSF-----GFGGEESAGASFLRFDGTPWSTDKDGIIMCL 415 (543)
T ss_pred CceEEEEeccHHHHHHHHHHcCCceeecCccHHHHHHHHhcCCe-----EEEEeccCceEecccCCCCcccCcHHHHHHH
Confidence 3588899999999999999999999999999999999998654 99999999999955 788999999999
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHhccccccCce---eEEEeccCccchHHHH-------------------------HHH
Q 027073 144 KIIIQMVRMKLEGSDEGIGSLIKDLEEPLESIE---LRMNIISEPRYAKAKG-------------------------SEA 195 (228)
Q Consensus 144 ~ll~e~~a~~~~~~~~~L~~ll~~lp~~~~~~~---~~i~~~~~~~~~~~~~-------------------------~~l 195 (228)
+++ |+++. +|+||+++++++|++|...+ .++.|+|+.+..-.+. .+.
T Consensus 416 ~il-e~la~----~~~~L~~ll~~lp~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (543)
T TIGR01132 416 LAA-EITAV----TGKNPQQHYNELAAKFGAPSYNRIQAPATSAQKARLKKLSPEMVSATTLAGDPITARLTAAPGNGAA 490 (543)
T ss_pred HHH-HHHHH----hCCCHHHHHHHHHHHhCCceEEEEecCChHHHHHHHHHHhccCCChHHhCCceeEEEEeccCCCCcc
Confidence 887 99998 89999999999998774333 3344555322210111 123
Q ss_pred HHHHhhcccccceeeecCCCCCCceeEEEee
Q 027073 196 IEEFRKYIEVLGLQKTNSHSANETICLIIQT 226 (228)
Q Consensus 196 i~~~r~~~~~gw~lv~~~~ps~~ep~~~~~~ 226 (228)
+||+|..+++||+|| |||||||++||..
T Consensus 491 ~DGvki~~~~gWvli---RpSgTEP~irvy~ 518 (543)
T TIGR01132 491 IGGLKVTTDNGWFAA---RPSGTEDVYKIYC 518 (543)
T ss_pred CCeEEEEEcCcEEEE---ecCCCCceEEEEE
Confidence 778998888999999 9999999999975
No 25
>PRK14320 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=1.7e-42 Score=318.31 Aligned_cols=199 Identities=20% Similarity=0.232 Sum_probs=172.9
Q ss_pred hhHHHHHHHHHHhcCCcEEEEecCCCCeEEEEeCCCccccchhHHHHHHHHHHhhCCCCeEEEcccCCHHHHHHHHHcCC
Q 027073 12 KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDRGG 91 (228)
Q Consensus 12 ~~~l~~l~~~v~~~~adlgia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~ll~~~~~~~vv~~v~ss~~l~~ia~~~g~ 91 (228)
+++++.+.+.|++.+||+|+++||||||++++|++|+++++|++++|+++++++..+...||.++.||.+++++++++|+
T Consensus 217 ~~~l~~l~~~v~~~~adlGia~DgDaDR~~~vd~~G~~l~gd~~~al~a~~l~~~~~~~~vV~~~~~s~~~~~~~~~~g~ 296 (443)
T PRK14320 217 ATCVSNIKKAVKEQKADLGISLDGDADRIIIVDENGQEIDGDGILNILAQYSDICGGTNGIVGTQMTNMSYENHYRANKI 296 (443)
T ss_pred hHhHHHHHHHHHHcCCCEEEEECCCCceEEEECCCCcccCHHHHHHHHHHHHHHhCCCCCEEEecCCcHHHHHHHHHCCC
Confidence 58899999999999999999999999999999999999999999999999998754334699999999999999999999
Q ss_pred eEEEEecchHHHHHHHhhcCcCCcceeEEeecccceeccCCCcCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHhcccc
Q 027073 92 NHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGSLIKDLEEP 171 (228)
Q Consensus 92 ~v~~t~vG~k~i~~~~~~~~~~~~~~~~g~E~sg~~~~~~~~~~~Dgi~a~~~ll~e~~a~~~~~~~~~L~~ll~~lp~~ 171 (228)
++++|+||++|++++|.+.++ +||||+|||++|++|.+++|||++++++| |+++. ++++|++++... .
T Consensus 297 ~~~~t~vG~~~i~~~m~~~~~-----~~ggE~sG~~~~~~~~~~~Dgi~a~~~ll-e~la~----~~~~ls~l~~~~--~ 364 (443)
T PRK14320 297 PFIRSKVGDRYVLEDLVKYGY-----KIGGESSGHVINLNFGTTGDGLFTAIQLL-AIFSQ----ADKPVSEFKLQG--E 364 (443)
T ss_pred CEEEecCchHHHHHHHHhCCC-----cEeecCCccEEccCCCCcCCHHHHHHHHH-HHHHH----cCCCHHHHhccc--c
Confidence 999999999999999998765 89999999999999999999999999888 99998 899999999542 2
Q ss_pred ccCceeEEEeccCccch---HHHHHHHHHHHhhcc-cccceeeecCCCCCCceeEEEee
Q 027073 172 LESIELRMNIISEPRYA---KAKGSEAIEEFRKYI-EVLGLQKTNSHSANETICLIIQT 226 (228)
Q Consensus 172 ~~~~~~~i~~~~~~~~~---~~~~~~li~~~r~~~-~~gw~lv~~~~ps~~ep~~~~~~ 226 (228)
|. +..+++|+|+.+.. .++..+.+++++... ++||+|| |||||||++||..
T Consensus 365 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gW~Li---RpS~teP~~rv~~ 419 (443)
T PRK14320 365 LM-QQTLINVPLTKKVAREDLQKVASDVNDVEKRLGNRGRVLL---RPSGTEPVLRVMV 419 (443)
T ss_pred cC-ceEEEEEEecCCCCcchhHHHHHHHHHHHhhhCCCceEEE---ecCCCCceEEEEE
Confidence 22 36777777755431 122335688888776 6889999 9999999999974
No 26
>PRK14322 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=3e-42 Score=315.50 Aligned_cols=196 Identities=20% Similarity=0.265 Sum_probs=167.8
Q ss_pred hhHHHHHHHHHHhcCCcEEEEecCCCCeEEEEeCCCccccchhHHHHHHHHHHhhCC--CCeEEEcccCCHHHHHHHHHc
Q 027073 12 KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHP--GTTIVTDARTSMALTKFITDR 89 (228)
Q Consensus 12 ~~~l~~l~~~v~~~~adlgia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~ll~~~~--~~~vv~~v~ss~~l~~ia~~~ 89 (228)
+++++.+.+.|+ ++|+|+++||||||++++|++|+++++|++++|++.++++..+ ...||.|++||.+++++++++
T Consensus 210 ~~~l~~l~~~v~--~~dlGia~DgD~DR~~~vd~~G~~i~~d~~~~l~a~~l~~~~~~~~~~vV~~v~ss~~l~~~a~~~ 287 (429)
T PRK14322 210 ATHPRFLAEEMK--NGKVGFTFDGDGDRVIAVDEERNVVNGDRIIGILAVGLKEEGRLNSDTVVGTVMTNGGLEDFLKER 287 (429)
T ss_pred cCCHHHHHHHHH--hcCEEEEEcCCCceEEEECCCCcEEChHHHHHHHHHHHHHhcCCCCCeEEEeecCchHHHHHHHHc
Confidence 467788888887 5699999999999999999999999999999999999998752 237999999999999999999
Q ss_pred CCeEEEEecchHHHHHHHhhcCcCCcceeEEeecccceeccCCCcCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHhcc
Q 027073 90 GGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGSLIKDLE 169 (228)
Q Consensus 90 g~~v~~t~vG~k~i~~~~~~~~~~~~~~~~g~E~sg~~~~~~~~~~~Dgi~a~~~ll~e~~a~~~~~~~~~L~~ll~~lp 169 (228)
|+++++||||++|++++|.+.+. +||||+|||++|+++++.+||++++++++ |+++. ++++|+++++++|
T Consensus 288 g~~v~~t~vG~~~i~~~m~~~~~-----~~ggE~sG~~~~~~~~~~~Dgi~a~l~ll-e~la~----~~~~Ls~l~~~lp 357 (429)
T PRK14322 288 GIKLLRTKVGDKYVLEKMLESGA-----NLGGERSGHIIILDRSTTGDGLITALELM-RVLKR----SGRNLSDFAKEIP 357 (429)
T ss_pred CCeEEEeCCccHHHHHHHhhcCc-----ceeccCCceEEecCCCCCCcHHHHHHHHH-HHHHH----hCCCHHHHHhhch
Confidence 99999999999999999998765 89999999999999999999999999888 99988 8999999999999
Q ss_pred ccccCceeEEEeccCccchHHHHHHHHHHHhhccccc-ceeeecCCCCCCceeEEEee
Q 027073 170 EPLESIELRMNIISEPRYAKAKGSEAIEEFRKYIEVL-GLQKTNSHSANETICLIIQT 226 (228)
Q Consensus 170 ~~~~~~~~~i~~~~~~~~~~~~~~~li~~~r~~~~~g-w~lv~~~~ps~~ep~~~~~~ 226 (228)
.+|.. ..++.|+|+.....+.+.++++.+ .++| |+|| |||||||++||..
T Consensus 358 ~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~---~~~g~w~lv---RpS~teP~irv~~ 408 (429)
T PRK14322 358 DYPQI-TKNVRRTERMSLENENLRKIVEES---TSRGYRVVI---RPSGTEPVVRITV 408 (429)
T ss_pred hcCee-eeEeeeccccccchHHHHHHHHHh---cCCCcEEEE---ccCCCCcEEEEEE
Confidence 87654 568889884211122222333333 2556 9999 9999999999974
No 27
>PRK14318 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=2.6e-42 Score=317.44 Aligned_cols=199 Identities=19% Similarity=0.257 Sum_probs=170.7
Q ss_pred hhHHHHHHHHHHhcCCcEEEEecCCCCeEEEEeCCCccccchhHHHHHHHHHHhhCC--CCeEEEcccCCHHHHHHHHHc
Q 027073 12 KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHP--GTTIVTDARTSMALTKFITDR 89 (228)
Q Consensus 12 ~~~l~~l~~~v~~~~adlgia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~ll~~~~--~~~vv~~v~ss~~l~~ia~~~ 89 (228)
+++++.+.++|++.+||+|+++||||||++++|++|+++++|++++|++.++++..+ +..||+|++||.+++++++++
T Consensus 220 ~~~l~~l~~~v~~~~adlGia~DgD~DR~~~vd~~G~~l~~d~~~~l~a~~l~~~~~~~~~~vV~~v~ss~~~~~~~~~~ 299 (448)
T PRK14318 220 STHLEQLQAAVVAHGADLGLAHDGDADRCLAVDANGNVVDGDQIMAILALAMKEAGELASDTLVATVMSNLGLKLAMREA 299 (448)
T ss_pred CCCHHHHHHHHHhcCCCEEEEecCCCceEEEECCCCcEeCHHHHHHHHHHHHHHhcCCCCCcEEEEecCchHHHHHHHHc
Confidence 578999999999999999999999999999999999999999999999998887642 347999999999999999999
Q ss_pred CCeEEEEecchHHHHHHHhhcCcCCcceeEEeecccceeccCCCcCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHhcc
Q 027073 90 GGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGSLIKDLE 169 (228)
Q Consensus 90 g~~v~~t~vG~k~i~~~~~~~~~~~~~~~~g~E~sg~~~~~~~~~~~Dgi~a~~~ll~e~~a~~~~~~~~~L~~ll~~lp 169 (228)
|+++++|+||++|++++|.+.+. +||||+|||++|+++.+.+||++++++++ |+++. ++++|+++++++|
T Consensus 300 g~~v~~t~vG~~~i~~~~~~~~~-----~~ggE~sG~~~~~~~~~~~Dgi~a~l~il-e~la~----~~~~ls~l~~~~~ 369 (448)
T PRK14318 300 GITVVTTAVGDRYVLEEMRAGGY-----SLGGEQSGHIVMPDHATTGDGILTGLRLM-ARMAQ----TGKSLAELASAMT 369 (448)
T ss_pred CCcEEEeCChHHHHHHHHHhcCc-----EEEEcCcCcEEecCCCCCCCHHHHHHHHH-HHHHH----hCCCHHHHHhhhh
Confidence 99999999999999999997664 99999999999999999999999999888 89887 8999999998877
Q ss_pred ccccCceeEEEeccCccchHHHHHHHHHHHhh---cc-cccceeeecCCCCCCceeEEEee
Q 027073 170 EPLESIELRMNIISEPRYAKAKGSEAIEEFRK---YI-EVLGLQKTNSHSANETICLIIQT 226 (228)
Q Consensus 170 ~~~~~~~~~i~~~~~~~~~~~~~~~li~~~r~---~~-~~gw~lv~~~~ps~~ep~~~~~~ 226 (228)
.++. ...+|+|..+....+..++.++++. .+ ++||+|| |||+|||++||..
T Consensus 370 ~~p~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~gw~lv---RpS~teP~irv~~ 424 (448)
T PRK14318 370 VLPQ---VLINVPVVDKTTAATAPSVRAAVARAEAELGDTGRVLL---RPSGTEPLVRVMV 424 (448)
T ss_pred hcCc---ceeeeecCCccchhccHHHHHHHHHHHhhhcCCeEEEE---eeCCCCcEEEEEE
Confidence 6532 2336777554322211345555555 55 5789999 9999999999974
No 28
>PRK14323 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=2.7e-42 Score=316.70 Aligned_cols=195 Identities=21% Similarity=0.205 Sum_probs=167.8
Q ss_pred hhHHHHHHHHHHhcCCcEEEEecCCCCeEEEEeCCCccccchhHHHHHHHHHHhhCCCCeEEEcccCCHHHHHHHHHcCC
Q 027073 12 KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDRGG 91 (228)
Q Consensus 12 ~~~l~~l~~~v~~~~adlgia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~ll~~~~~~~vv~~v~ss~~l~~ia~~~g~ 91 (228)
+++++.+.+.|++.+||+|+++||||||++++|++|+++++|++++|++++.. + ..||.|++||.+++++++++|+
T Consensus 218 ~~~l~~l~~~v~~~~adlGia~DgD~DR~~~vD~~G~~i~~d~~~~l~a~~~~---~-~~vV~~v~ss~~~~~~~~~~g~ 293 (440)
T PRK14323 218 STHPEALQRFVVEGGLDLGVAFDGDADRALFVDRRGRLFHGDHMLYLNALARG---E-KAVVGTVMSNMALEVKLREAGI 293 (440)
T ss_pred CCCHHHHHHHHhccCCCEEEEeCCCcceeEEECCCCcEeCHHHHHHHHHHHhc---C-CcEEEEeCCChHHHHHHHHcCC
Confidence 46888999999999999999999999999999999999999999999997642 2 3799999999999999999999
Q ss_pred eEEEEecchHHHHHHHhhcCcCCcceeEEeecccceeccCCCcCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHhcccc
Q 027073 92 NHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGSLIKDLEEP 171 (228)
Q Consensus 92 ~v~~t~vG~k~i~~~~~~~~~~~~~~~~g~E~sg~~~~~~~~~~~Dgi~a~~~ll~e~~a~~~~~~~~~L~~ll~~lp~~ 171 (228)
++++|||||+||+++|.+.+. +||||+|||++|+++.+++|||+++++++ |+++. ++++|+++++++|.+
T Consensus 294 ~v~~t~vG~~~i~~~m~~~~~-----~~ggE~sG~~~f~~~~~~~Dgi~a~l~~l-e~la~----~~~~ls~l~~~~~~~ 363 (440)
T PRK14323 294 AFHRTAVGDRYVHEKLHAKGL-----TLGGEQSGHVLFLDHAPTGDGVLTALLTL-AAMKA----LGTDLDAWYDALPMY 363 (440)
T ss_pred eEEEeCChHHHHHHHHHhcCC-----eEEEcCcccEEeCCCCCCCcHHHHHHHHH-HHHHH----hCCCHHHHHHhhhhc
Confidence 999999999999999998775 89999999999999999999999999888 99988 899999999999987
Q ss_pred ccCceeEEEeccCccchHHHHHHHHHHHh---hcc-cccceeeecCCCCCCceeEEEee
Q 027073 172 LESIELRMNIISEPRYAKAKGSEAIEEFR---KYI-EVLGLQKTNSHSANETICLIIQT 226 (228)
Q Consensus 172 ~~~~~~~i~~~~~~~~~~~~~~~li~~~r---~~~-~~gw~lv~~~~ps~~ep~~~~~~ 226 (228)
|.. ..++.|.. ++...+..++.++++ ... ++||+|| |||||||++||..
T Consensus 364 ~~~-~~~v~~~~--k~~~~~~~~~~~~i~~~~~~~~~~gW~Lv---RpS~TEP~irv~~ 416 (440)
T PRK14323 364 PQT-LLNVRVSD--KAKVAADPRVQEAVREAEARLGGRGRVNL---RPSGTEPLVRVMV 416 (440)
T ss_pred Cce-eEEEEeCC--ccchhcCHHHHHHHHHHHhhcCCCeEEEE---ecCCCccEeEEEE
Confidence 654 45777742 221111124455555 554 5789999 9999999999974
No 29
>PRK14317 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=7.5e-42 Score=315.70 Aligned_cols=199 Identities=20% Similarity=0.268 Sum_probs=166.2
Q ss_pred hhHHHHHHHHHHhcCCcEEEEecCCCCeEEEEeCCCccccchhHHHHHHHHHHhhC--CCCeEEEcccCCHHHHHHHHHc
Q 027073 12 KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEH--PGTTIVTDARTSMALTKFITDR 89 (228)
Q Consensus 12 ~~~l~~l~~~v~~~~adlgia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~ll~~~--~~~~vv~~v~ss~~l~~ia~~~ 89 (228)
+++++.+.+.|++.+||+|+++||||||++++|++|+++++|++++|+++++++.. ++..||.|++||.+++++++++
T Consensus 233 ~~~l~~l~~~v~~~~adlGia~DgDgDR~~~vd~~G~~i~~d~l~~l~a~~ll~~~~~~~~~VV~~v~ss~~~~~~~~~~ 312 (465)
T PRK14317 233 STHLEPLQAAVLEHGADMGFAFDGDADRVLAVDGQGRVVDGDHILYLWGSHLQEQNQLPDNLLVATVMSNLGFERAWQQR 312 (465)
T ss_pred hHhHHHHHHHHHhcCCCEEEEECCCCcEEEEECCCCCEEChhHHHHHHHHHHHHhcCCCCCeEEEeeecchHHHHHHHHc
Confidence 57899999999999999999999999999999999999999999999999999873 4457999999999999999999
Q ss_pred CCeEEEEecchHHHHHHHhhcCcCCcceeEEeecccceeccCCCcCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHhcc
Q 027073 90 GGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGSLIKDLE 169 (228)
Q Consensus 90 g~~v~~t~vG~k~i~~~~~~~~~~~~~~~~g~E~sg~~~~~~~~~~~Dgi~a~~~ll~e~~a~~~~~~~~~L~~ll~~lp 169 (228)
|+++++|+|||+||+++|.+.+. +||||+|||++|+++.+.+||++++++++ |+++. ++++|++++++++
T Consensus 313 g~~v~~t~vG~~~i~~~m~~~~~-----~~ggE~sg~~~~~~~~~~~Dgi~a~l~il-e~la~----~~~~lsel~~~~~ 382 (465)
T PRK14317 313 GGQLERTAVGDQHVHAAMLETGA-----MLGGEQSGHILCHHHGLSGDGLLTALHLA-TLVHQ----SGVSLAELVDQSF 382 (465)
T ss_pred CCeEEEcCCchHHHHHHHHHcCc-----EeeccccceEEEeccccCCcHHHHHHHHH-HHHHH----hCCCHHHHHHhHH
Confidence 99999999999999999998775 89999999999999999999999999887 99988 8999999999874
Q ss_pred ccccCceeEEE-------eccCccchHHHHHHHHHHHhhcc-cccceeeecCCCCCCceeEEEee
Q 027073 170 EPLESIELRMN-------IISEPRYAKAKGSEAIEEFRKYI-EVLGLQKTNSHSANETICLIIQT 226 (228)
Q Consensus 170 ~~~~~~~~~i~-------~~~~~~~~~~~~~~li~~~r~~~-~~gw~lv~~~~ps~~ep~~~~~~ 226 (228)
..|.+...++. |+|+.+ ......+..++..+ ++||+|| |||||||++||..
T Consensus 383 ~~~p~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~gW~li---RpS~TEP~irv~~ 441 (465)
T PRK14317 383 QTYPQKLRNVRVEDRDRRLNWQEC---EPLQQAIAQAEAAMGDTGRVLV---RASGTEPLIRVMV 441 (465)
T ss_pred HhCCceEEEeeccccchhhhhhcC---hhHHHHHHHHHHhhcCCceEEE---ecCCCCCEEEEEE
Confidence 44432222332 333222 11111122222222 5789999 9999999999974
No 30
>PRK14319 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=1e-41 Score=311.97 Aligned_cols=195 Identities=19% Similarity=0.283 Sum_probs=163.5
Q ss_pred hhHHHHHHHHHHhcCCcEEEEecCCCCeEEEEeCCCccccchhHHHHHHHHHHhhCC--CCeEEEcccCCHHHHHHHHHc
Q 027073 12 KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHP--GTTIVTDARTSMALTKFITDR 89 (228)
Q Consensus 12 ~~~l~~l~~~v~~~~adlgia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~ll~~~~--~~~vv~~v~ss~~l~~ia~~~ 89 (228)
+++++.+.+.+ .++|+|+++||||||++++|++|+++++|++++|+++++++..+ +..||.|++||.+++++++++
T Consensus 207 ~~~~~~l~~~v--~~~dlGia~DgDaDR~~~vd~~G~~i~~d~~~~l~a~~ll~~~~~~~~~vV~~v~ss~~~~~~~~~~ 284 (430)
T PRK14319 207 STHPENAKEKI--TNHKIAILHDGDGDRCIFLDEKGQEFHGDKIIGLTAKHLKKEGRLKNDVVVGTILSNMGLEVFLKNN 284 (430)
T ss_pred CCCHHHHHHHH--HhcCEEEEEcCCCceEEEECCCCCEeChhHHHHHHHHHHHHhCCCCCCeEEEeecCchHHHHHHHHC
Confidence 34566667766 35699999999999999999999999999999999999998642 346999999999999999999
Q ss_pred CCeEEEEecchHHHHHHHhhcCcCCcceeEEeecccceeccCCCcCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHhcc
Q 027073 90 GGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGSLIKDLE 169 (228)
Q Consensus 90 g~~v~~t~vG~k~i~~~~~~~~~~~~~~~~g~E~sg~~~~~~~~~~~Dgi~a~~~ll~e~~a~~~~~~~~~L~~ll~~lp 169 (228)
|+++++||||++|++++|.+.+. +||||+|||++|+++.+.+||++++++++ |+++. ++++|+++++++|
T Consensus 285 g~~v~~t~~G~~~i~~~m~~~~~-----~~ggE~sG~~~f~~~~~~~Dgi~a~l~ll-e~l~~----~~~~ls~l~~~~p 354 (430)
T PRK14319 285 GIKVVRTKVGDRYVLEEMLKLNA-----TLGGERSGHIIYLDKSTTGDGLITALETL-SVMVK----SGKKLSDLSNEIP 354 (430)
T ss_pred CCcEEEeCCchHHHHHHHHHcCC-----EEEEcccceEEEhhccCCCcHHHHHHHHH-HHHHH----hCCCHHHHHhhcc
Confidence 99999999999999999998775 89999999999999999999999999888 99988 8999999999999
Q ss_pred ccccCceeEEEeccCccchHHHHHHHHHHHhhcccccceeeecCCCCCCceeEEEee
Q 027073 170 EPLESIELRMNIISEPRYAKAKGSEAIEEFRKYIEVLGLQKTNSHSANETICLIIQT 226 (228)
Q Consensus 170 ~~~~~~~~~i~~~~~~~~~~~~~~~li~~~r~~~~~gw~lv~~~~ps~~ep~~~~~~ 226 (228)
.++.. ..++++........++..++++++ ++||+|| |||||||++||..
T Consensus 355 ~~~~~-~~~v~~k~~~~~~~~~~~~~~~~~----~~gw~Li---RpS~TeP~irv~~ 403 (430)
T PRK14319 355 DYPQV-MINVKVKNKEVYKHKEVFKLIKSI----KDYRVIV---RPSGTEPVVRVLV 403 (430)
T ss_pred cccee-eEEEEeCCccccccHHHHHHHhCC----CCeEEEE---ecCCCccEEEEEE
Confidence 87643 455555321101112233455553 4799999 9999999999974
No 31
>PLN02307 phosphoglucomutase
Probab=100.00 E-value=3.4e-41 Score=317.03 Aligned_cols=210 Identities=12% Similarity=0.095 Sum_probs=169.8
Q ss_pred CCCCCCCCCCChhHHHHHHHHH-------HhcCCcEEEEecCCCCeEEEEeCCCccccchhHHHHHHHHHHhhC----CC
Q 027073 1 MFPNHIPNPEDKTAMALTRAAV-------LENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEH----PG 69 (228)
Q Consensus 1 ~Fp~~~PnPe~~~~l~~l~~~v-------~~~~adlgia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~ll~~~----~~ 69 (228)
+||+++|||+ ++.+..+...+ .+.+||+|||+||||||++++ ++|+++.++.++++++.+++... ++
T Consensus 263 ~Fp~~~PnP~-~~~l~~lv~~~~~~~~~~~~~~aDlgiA~DgDaDR~~vv-~~g~~i~~d~~l~ll~~~~l~~~~~~~~g 340 (579)
T PLN02307 263 DFGGGHPDPN-LTYAKELVKRMGLGKTSYGDEPPEFGAASDGDGDRNMIL-GKRFFVTPSDSVAIIAANAQEAIPYFSGG 340 (579)
T ss_pred CCCCCCCCCC-HHHHHHHHHHhhhccccccccCCCEEEEeCCCCCeEEEE-ecCcEEcCChHHHHHHHHHHHhhhhhhcC
Confidence 5999999996 55555555444 344699999999999999999 78999999999999999987653 22
Q ss_pred C-eEEEcccCCHHHHHHHHHcCCeEEEEecchHHHHHHHhhcCcCCcceeEEeecccceeccCCCcCCCHHHHHHHHHHH
Q 027073 70 T-TIVTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQ 148 (228)
Q Consensus 70 ~-~vv~~v~ss~~l~~ia~~~g~~v~~t~vG~k~i~~~~~~~~~~~~~~~~g~E~sg~~~~~~~~~~~Dgi~a~~~ll~e 148 (228)
. .||.|++||.+++++|+++|+++++|+||||||.++|.+.+ ++||||||||++ +++.+++||++++++++ |
T Consensus 341 ~~~VV~tv~sS~~l~~ia~~~G~~~~~t~vGfk~I~~~m~e~~-----~~~GgEeSgG~~-~~~~~dkDGi~aallll-e 413 (579)
T PLN02307 341 LKGVARSMPTSAALDVVAKKLNLPFFEVPTGWKFFGNLMDAGK-----LSICGEESFGTG-SDHIREKDGIWAVLAWL-S 413 (579)
T ss_pred CcEEEEeChhhHHHHHHHHHcCCeEEEcCchHHHHHHHHHhCC-----cEEEEcccCCCC-CCCCCCCcHHHHHHHHH-H
Confidence 2 69999999999999999999999999999999999999864 499999999985 99999999999999776 9
Q ss_pred HHHHhhcCC----CC--CHHHHHHhccccc-cCceeEEEeccCccchHHHHHHHHHHHhh--------------------
Q 027073 149 MVRMKLEGS----DE--GIGSLIKDLEEPL-ESIELRMNIISEPRYAKAKGSEAIEEFRK-------------------- 201 (228)
Q Consensus 149 ~~a~~~~~~----~~--~L~~ll~~lp~~~-~~~~~~i~~~~~~~~~~~~~~~li~~~r~-------------------- 201 (228)
|++. .+++ ++ ||++.+++|++.| .+.+.++++.... .+++.++|+.+|.
T Consensus 414 l~a~-~~~~~~~~~~~~tl~~~l~el~~~~G~~~~~~~~~~~~~---~~~~~~~~~~lr~~~~~~~~~~~~~~~~v~~~~ 489 (579)
T PLN02307 414 ILAH-KNKDVLPGGKLVTVEDIVREHWATYGRNFYSRYDYENVD---SEAANKMMDHLRDLVNKSKKGIKYGVYTLAFAD 489 (579)
T ss_pred HHHH-hCCCcccccCcCCHHHHHHHHHHHhCCCeeeecceecCC---HHHHHHHHHHHhcccccccCCCEecceEEEEEe
Confidence 9987 3333 44 8999999999998 3456666665332 2222344544444
Q ss_pred --------------------ccccc-ceeeecCCCCCCc---eeEEEee
Q 027073 202 --------------------YIEVL-GLQKTNSHSANET---ICLIIQT 226 (228)
Q Consensus 202 --------------------~~~~g-w~lv~~~~ps~~e---p~~~~~~ 226 (228)
.+++| |+++ |||||| |+||+-.
T Consensus 490 d~~~~~~~~~~~~~~dglk~~~~dg~wi~~---RpSGTE~~~PkiK~Y~ 535 (579)
T PLN02307 490 DFEYTDPVDGSVSSKQGIRFLFTDGSRIIF---RLSGTGSAGATIRLYI 535 (579)
T ss_pred eceeecCCCCCCCccCeEEEEEcCCeEEEE---EcCCCCCCCCeEEEEE
Confidence 45677 9999 999999 9999853
No 32
>cd03088 ManB ManB is a bacterial phosphomannomutase (PMM) that catalyzes the conversion of mannose 6-phosphate to mannose-1-phosphate in the second of three steps in the GDP-mannose pathway, in which GDP-D-mannose is synthesized from fructose-6-phosphate. In Mycobacterium tuberculosis, the causative agent of tuberculosis, PMM is involved in the biosynthesis of mannosylated lipoglycans that participate in the association of mycobacteria with host macrophage phagocytic receptors. ManB belongs to the the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrall
Probab=100.00 E-value=6.8e-42 Score=315.51 Aligned_cols=210 Identities=18% Similarity=0.118 Sum_probs=175.1
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCcEEEEecCCCCeEEEEeCCCccccchhHHHHHHHHHHhhCCCCeEEEcccCCHH
Q 027073 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMA 81 (228)
Q Consensus 2 Fp~~~PnPe~~~~l~~l~~~v~~~~adlgia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~ll~~~~~~~vv~~v~ss~~ 81 (228)
|+++.|+|..+++++.+.+.|++.+|||||++||||||++++|++|+++++|++++|+++++. ...||+|++||.+
T Consensus 201 ~~~~~~~~~~~~~l~~l~~~v~~~~adlGia~D~DgDR~~vvd~~G~~i~~d~l~~l~~~~~~----~~~Vv~~v~ss~~ 276 (459)
T cd03088 201 FIPVDTEAVRPEDRALAAAWAAEHGLDAIVSTDGDGDRPLVADETGEWLRGDILGLLTARFLG----ADTVVTPVSSNSA 276 (459)
T ss_pred CCCCCCCcCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCceeECCCCCEECchHHHHHHHHHhC----CCEEEEccCCcHH
Confidence 555556665568999999999999999999999999999999999999999999999999873 2379999999999
Q ss_pred HHHHHHHcCCeEEEEecchHHHHHHHhhcCcCCcceeEEeecccceeccC----------CCcCCCHHHHHHHHHHHHHH
Q 027073 82 LTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKE----------NYFLDDGAYMVVKIIIQMVR 151 (228)
Q Consensus 82 l~~ia~~~g~~v~~t~vG~k~i~~~~~~~~~~~~~~~~g~E~sg~~~~~~----------~~~~~Dgi~a~~~ll~e~~a 151 (228)
+++++. ++++++|+|||+||+++|++.+..|..+++|+|+|||++|++ |.+++|||+++++++ |+++
T Consensus 277 i~~~~~--~~~~~~t~vG~~~i~~~m~~~~~~~~~~~~g~E~sg~~~~~~~~~~~~~~~~~~~~~Dgi~a~l~il-e~l~ 353 (459)
T cd03088 277 IELSGF--FKRVVRTRIGSPYVIAAMAEAAAAGAGRVVGYEANGGFLLGSDIERNGRTLKALPTRDAVLPILAVL-AAAK 353 (459)
T ss_pred HHHcCC--ceeEEECCCccHHHHHHHHHHHhcCCceEEEEecccceeccchhhccccccccCCCccHHHHHHHHH-HHHH
Confidence 998875 589999999999999999975433334689999999999996 567999999999887 9988
Q ss_pred HhhcCCCCCHHHHHHhccccccCceeEEE-eccCccch-----H----------------HHHHHHHHHHhhccccc-ce
Q 027073 152 MKLEGSDEGIGSLIKDLEEPLESIELRMN-IISEPRYA-----K----------------AKGSEAIEEFRKYIEVL-GL 208 (228)
Q Consensus 152 ~~~~~~~~~L~~ll~~lp~~~~~~~~~i~-~~~~~~~~-----~----------------~~~~~li~~~r~~~~~g-w~ 208 (228)
. ++++|+++++++|++|.. ..++. |+|+.++. . ...++.+||+|..+++| |+
T Consensus 354 ~----~~~~Ls~ll~~l~~~~~~-~~~i~~~~~~~~~~~m~~l~~~~~~~~~~~~~~~~~~~~v~~~DGvk~~~~dg~W~ 428 (459)
T cd03088 354 E----AGIPLSELVASLPARFTA-SDRLQNFPTEKSQALIARLSADPEARAAFFFALGGEVASIDTTDGLRMTFANGDIV 428 (459)
T ss_pred h----cCCCHHHHHHHHhhcceE-hhccccCCHHHHHHHHHHHHhChHhhhhhhhccCCcccccCCCCeEEEEECCCCEE
Confidence 7 899999999999988865 45665 67643321 0 01234688899988766 99
Q ss_pred eeecCCCCCCceeEEEee
Q 027073 209 QKTNSHSANETICLIIQT 226 (228)
Q Consensus 209 lv~~~~ps~~ep~~~~~~ 226 (228)
|| |||||||++||..
T Consensus 429 li---RpSgTEP~~riy~ 443 (459)
T cd03088 429 HL---RPSGNAPELRCYV 443 (459)
T ss_pred EE---ECCCCCceEEEEE
Confidence 99 9999999999874
No 33
>cd03086 PGM3 PGM3 (phosphoglucomutase 3), also known as PAGM (phosphoacetylglucosamine mutase) and AGM1 (N-acetylglucosamine-phosphate mutase), is an essential enzyme found in eukaryotes that reversibly catalyzes the conversion of GlcNAc-6-phosphate into GlcNAc-1-phosphate as part of the UDP-N-acetylglucosamine (UDP-GlcNAc) biosynthetic pathway. UDP-GlcNAc is an essential metabolite that serves as the biosynthetic precursor of many glycoproteins and mucopolysaccharides. AGM1 is a member of the alpha-D-phosphohexomutase superfamily, which catalyzes the intramolecular phosphoryl transfer of sugar substrates. The alpha-D-phosphohexomutases have four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=1e-38 Score=296.82 Aligned_cols=207 Identities=11% Similarity=0.065 Sum_probs=174.7
Q ss_pred CCCCCChhHHHHHHHHHHhcC----CcEEEEecCCCCeEEEEeCCC----ccccchhHHHHHHHHHHhhCC-----C---
Q 027073 6 IPNPEDKTAMALTRAAVLENN----ADLGVVFDTDVDRSGVVDNKG----NPINGDKLIALMSAIVLKEHP-----G--- 69 (228)
Q Consensus 6 ~PnPe~~~~l~~l~~~v~~~~----adlgia~D~DgDR~~vvd~~G----~~l~~d~~~~Ll~~~ll~~~~-----~--- 69 (228)
+|+|-.+++++.+++.+++.+ ||+|+||||||||++++|++| ++++||++++|+++|+++..+ +
T Consensus 229 ~n~~~ga~~l~~l~~~v~~~~~~~~adlgiA~DGDADRl~~vd~~g~~~~~~l~GD~i~aL~a~~ll~~~~~~~~~~~~~ 308 (513)
T cd03086 229 LNDGCGADYVKTKQKPPRGFELKPPGVRCCSFDGDADRLVYFYPDSSNKFHLLDGDKIATLFAKFIKELLKKAGEELKLT 308 (513)
T ss_pred CCCCcccccHHHHHHHHHhcCCCCCccEEEEECCCCCcEEEEEecCCCceEEECHHHHHHHHHHHHHHhccccCCCCCCC
Confidence 444445889999999999887 999999999999999999999 999999999999999987421 2
Q ss_pred CeEEEcccCCHHHHHHHHH-cCCeEEEEecchHHHHHHHhhcCcCCcceeEEeecccc--eeccCC--------------
Q 027073 70 TTIVTDARTSMALTKFITD-RGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGH--GALKEN-------------- 132 (228)
Q Consensus 70 ~~vv~~v~ss~~l~~ia~~-~g~~v~~t~vG~k~i~~~~~~~~~~~~~~~~g~E~sg~--~~~~~~-------------- 132 (228)
..||.|+.||..+.+++++ +|+++++|+||||||.++|.+.+. .+|||+||| ++|+++
T Consensus 309 ~~VV~tv~sn~~~~~~l~~~~G~~~~~t~vG~k~v~~~m~e~~~-----~~ggE~sGHgtvif~~~~~~~~~~~~~~~~~ 383 (513)
T cd03086 309 IGVVQTAYANGASTKYLEDVLKVPVVCTPTGVKHLHHAAEEFDI-----GVYFEANGHGTVLFSESALAKIEENSSLSDE 383 (513)
T ss_pred cEEEEEeccchHHHHHHHHHcCceEEEeCCcHHHHHHHHHHhCc-----ceEEeccCCEEEEECchHHhhhhhhccccch
Confidence 2699999999999999988 999999999999999999999875 799999999 999998
Q ss_pred ----------------CcCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHhccccccCceeEEEeccCc----c--ch--
Q 027073 133 ----------------YFLDDGAYMVVKIIIQMVRMKLEGSDEGIGSLIKDLEEPLESIELRMNIISEP----R--YA-- 188 (228)
Q Consensus 133 ----------------~~~~Dgi~a~~~ll~e~~a~~~~~~~~~L~~ll~~lp~~~~~~~~~i~~~~~~----~--~~-- 188 (228)
.+++|||+++++++ ++++. .+++|+++++.++.++.. ..++++.... . ..
T Consensus 384 ~~~~~~~l~~~~~~~n~~~gDgi~~al~vl-~~l~~----~~~~lsel~~~y~~~p~~-~~~v~v~~~~~~~~~~~e~~~ 457 (513)
T cd03086 384 QEKAAKTLLAFSRLINQTVGDAISDMLAVE-LILAA----LGWSPQDWDNLYTDLPNR-QLKVKVPDRSVIKTTDAERRL 457 (513)
T ss_pred hhhHHHHHHHHHHhhCCCCcHHHHHHHHHH-HHHHH----hCCCHHHHHhhchhcCee-eeEEEecCccchhhhhHHhhc
Confidence 56899999999877 88887 799999999977755432 4455553221 1 11
Q ss_pred --HHHHHHHHHHHhhcccccceeeecCCCCCCceeEEEee
Q 027073 189 --KAKGSEAIEEFRKYIEVLGLQKTNSHSANETICLIIQT 226 (228)
Q Consensus 189 --~~~~~~li~~~r~~~~~gw~lv~~~~ps~~ep~~~~~~ 226 (228)
++..++.+||+|..+++||+|| |||||||+|||..
T Consensus 458 ~~p~~l~~~iDG~~~~~~~gr~lV---RpSGTEp~iRvya 494 (513)
T cd03086 458 VEPKGLQDKIDAIVAKYNNGRAFV---RPSGTEDVVRVYA 494 (513)
T ss_pred cccHHHHHHHHHHHhcCCCeeEEE---ecCCCCcEEEEEE
Confidence 1335678999999999999999 9999999999964
No 34
>KOG1220 consensus Phosphoglucomutase/phosphomannomutase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.2e-36 Score=273.38 Aligned_cols=173 Identities=32% Similarity=0.388 Sum_probs=158.4
Q ss_pred CCCC-CCCCCCChhHHHHHHHHHHhcCCcEEEEecCCCCeEEEEeC---CCccccchhHHHHHHHHHHhhCCCCeE----
Q 027073 1 MFPN-HIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDN---KGNPINGDKLIALMSAIVLKEHPGTTI---- 72 (228)
Q Consensus 1 ~Fp~-~~PnPe~~~~l~~l~~~v~~~~adlgia~D~DgDR~~vvd~---~G~~l~~d~~~~Ll~~~ll~~~~~~~v---- 72 (228)
+||+ +.||||++.+|+...+.+.+++||+++|+|||+||+++++. +|+.++||+++||+++++++++++...
T Consensus 287 ~FPt~~~PNPEek~aL~ls~~~a~~n~~dlvlanDpDaDR~avaek~~G~wr~fnGNElgALl~~~~le~~k~~~~~~~~ 366 (607)
T KOG1220|consen 287 MFPTVPFPNPEEKGALDLSIKAALKNSADLVLANDPDADRFAVAEKVSGEWRVFNGNELGALLSWWVLEEHKGSTPVQDV 366 (607)
T ss_pred CCCCCCCCCcchHHHHHHHHHHHhccCCcEEEecCCCcchhhheeccCCcceeccchHHHHHHHHHHHHhccCCCccchh
Confidence 5999 99999999999999999999999999999999999999987 889999999999999999999976443
Q ss_pred --EEcccCCHHHHHHHHHcCCeEEEEecchHHHHHHHhhcCcCCcceeEEeecccceeccCCCcCCCHHHHHHHHHHHHH
Q 027073 73 --VTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMV 150 (228)
Q Consensus 73 --v~~v~ss~~l~~ia~~~g~~v~~t~vG~k~i~~~~~~~~~~~~~~~~g~E~sg~~~~~~~~~~~Dgi~a~~~ll~e~~ 150 (228)
.-+.+||.++..||+..|++.++|+|||||+.++..+.+.+|++.+|++|||+||.|+..+..+||++++++++ +|+
T Consensus 367 ~ml~s~vSs~l~~~ia~~eGf~~~~tltGFKwvgnrAieL~k~G~~v~fA~Ees~gym~g~~~~dkDGv~a~v~~a-~~~ 445 (607)
T KOG1220|consen 367 SMLNSTVSSGLTRFIAEIEGFHHEETLTGFKWVGNRAIELEKDGKEVHFAFEESIGYMFGENHLDKDGVSAAVKFA-SMA 445 (607)
T ss_pred hhhhhHHHHHHHHHHHHHhCceeeeccccchhhhHHHHHHHhcCceeeeeehhhcCcccccCccCcchHHHHHHHH-HHH
Confidence 46778999999999999999999999999999999999888888999999999999999999999999999877 888
Q ss_pred HHhhcCCCCCHHHHHHhccccccC
Q 027073 151 RMKLEGSDEGIGSLIKDLEEPLES 174 (228)
Q Consensus 151 a~~~~~~~~~L~~ll~~lp~~~~~ 174 (228)
+++=...+.||++.+.++++.|..
T Consensus 446 ~~lr~~~~~sl~e~l~~l~e~yg~ 469 (607)
T KOG1220|consen 446 CRLRLAGNLSLSEVLEDLYERYGY 469 (607)
T ss_pred HHHHHhcCCCHHHHHHHHHHhhCc
Confidence 873134678999999999988854
No 35
>PTZ00302 N-acetylglucosamine-phosphate mutase; Provisional
Probab=100.00 E-value=1.4e-32 Score=257.63 Aligned_cols=208 Identities=14% Similarity=0.129 Sum_probs=172.3
Q ss_pred CCCCCCChhHHHHHHHHHHhcCCcEE------EEecCCCCeEEEEeC--CC----ccccchhHHHHHHHHHHhh--C--C
Q 027073 5 HIPNPEDKTAMALTRAAVLENNADLG------VVFDTDVDRSGVVDN--KG----NPINGDKLIALMSAIVLKE--H--P 68 (228)
Q Consensus 5 ~~PnPe~~~~l~~l~~~v~~~~adlg------ia~D~DgDR~~vvd~--~G----~~l~~d~~~~Ll~~~ll~~--~--~ 68 (228)
+.|+|--+++++.+++.+++.++|+| ++|||||||++++|+ +| ++++||++++|+|.++.+. . +
T Consensus 287 ~lN~~cGad~vk~lq~~p~~~~ad~G~~~~~~~sfDGDADRlv~~d~~~~g~~~~~lldGDkI~~L~A~~l~~~l~~~~~ 366 (585)
T PTZ00302 287 LLNDKCGADYVQKTRKPPRAMKEWPGDEETRVASFDGDADRLVYFFPDKDGDDKWVLLDGDRIAILYAMLIKKLLGKIQL 366 (585)
T ss_pred CCCCCCccccHHHHHHHHHhcCCCcCccCCeeEEECCCCCeEEEEEecCCCCccceecCHHHHHHHHHHHHHHHhhhcCC
Confidence 55666668899999999999999999 999999999999998 78 9999999999999999763 1 2
Q ss_pred CC----eEEEcccCCHHHHHHHHH-cC-CeEEEEecchHHHHHHHhhcCcCCcceeEEeecccc--eeccC---------
Q 027073 69 GT----TIVTDARTSMALTKFITD-RG-GNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGH--GALKE--------- 131 (228)
Q Consensus 69 ~~----~vv~~v~ss~~l~~ia~~-~g-~~v~~t~vG~k~i~~~~~~~~~~~~~~~~g~E~sg~--~~~~~--------- 131 (228)
+. .||.|+.||..+++++++ .| ++|++||||.||+.++|.+.+. .+|||.||| ++|++
T Consensus 367 ~~~l~igVVqTayaNgast~yl~~~lg~~~v~~t~tGvk~l~~~a~e~di-----~iyfEaNGHGTvif~~~~~~~~~~~ 441 (585)
T PTZ00302 367 KKKLDIGVVQTAYANGASTNYLNELLGRLRVYCAPTGVKNLHPKAHKYDI-----GIYFEANGHGTVLFNEKALAEWAKF 441 (585)
T ss_pred CCCccceEEEeccCCHHHHHHHHHhcCCeeEEEEeCchHHHHHHHHhcCC-----eEEEccCCCEEEEECcHHHhhhhhh
Confidence 33 699999999999999999 89 9999999999999999999775 799999999 99999
Q ss_pred ---------------------CCcCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHhccccccCceeEEEeccCc----c
Q 027073 132 ---------------------NYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGSLIKDLEEPLESIELRMNIISEP----R 186 (228)
Q Consensus 132 ---------------------~~~~~Dgi~a~~~ll~e~~a~~~~~~~~~L~~ll~~lp~~~~~~~~~i~~~~~~----~ 186 (228)
+...+|||+.+++++ ++++. .+.+++++++.++.+ .+...++.++... .
T Consensus 442 ~~~~~~~~~a~~~L~~~~~l~n~~vGDai~~~L~v~-~iL~~----~~~sl~e~~~~y~dl-P~~~~kv~v~~r~~i~t~ 515 (585)
T PTZ00302 442 LAKQNALNSACRQLEKFLRLFNQTIGDAISDLLAVE-LALAF----LGLSFQDWLNLYTDL-PSRQDKVTVKDRTLITNT 515 (585)
T ss_pred ccccchhhhHHHHHHHhHhhhcCCCccHHHHHHHHH-HHHHh----hCCCHHHHHhhcccC-CceeeeeEeccCcccccc
Confidence 667799999999777 77777 799999999954432 1123444443221 1
Q ss_pred ch------HHHHHHHHHHHhhcc-cccceeeecCCCCCCceeEEEee
Q 027073 187 YA------KAKGSEAIEEFRKYI-EVLGLQKTNSHSANETICLIIQT 226 (228)
Q Consensus 187 ~~------~~~~~~li~~~r~~~-~~gw~lv~~~~ps~~ep~~~~~~ 226 (228)
+. ++.+++-++++...+ ++||++| |||||||+|||..
T Consensus 516 d~e~~~v~P~~Lq~~id~~~~~~~~~gr~lv---RpSGTEp~vRvya 559 (585)
T PTZ00302 516 EDETRLLEPKGLQDKIDAIVSKYDNAARAFI---RPSGTEPVVRVYA 559 (585)
T ss_pred hHhhhcccHHHHHHHHHHHHhhccCCceEEE---EcCCCCcEEEEEE
Confidence 11 133456788888777 8899999 9999999999974
No 36
>PLN02895 phosphoacetylglucosamine mutase
Probab=100.00 E-value=1.5e-32 Score=255.85 Aligned_cols=205 Identities=14% Similarity=0.166 Sum_probs=167.3
Q ss_pred CCCCCCChhHHHHHHHHHHhcCC---cEE---EEecCCCCeEEEEeCCC-----ccccchhHHHHHHHHHHhhC------
Q 027073 5 HIPNPEDKTAMALTRAAVLENNA---DLG---VVFDTDVDRSGVVDNKG-----NPINGDKLIALMSAIVLKEH------ 67 (228)
Q Consensus 5 ~~PnPe~~~~l~~l~~~v~~~~a---dlg---ia~D~DgDR~~vvd~~G-----~~l~~d~~~~Ll~~~ll~~~------ 67 (228)
+.|+|-.+++++.++ .+.+ ++ |+| ++|||||||++++|++| ++++||++++|++.++.+..
T Consensus 252 ~lN~~cGad~v~~lq-~vp~-~~~~~d~G~~~~sfDGDADRlv~~d~~g~~~~~~llDGDkI~~L~A~~l~~~l~~~~~~ 329 (562)
T PLN02895 252 VLNEGVGADFVQKEK-VPPT-GFASKDVGLRCASLDGDADRLVYFYVSSAGSKIDLLDGDKIASLFALFIKEQLRILNGN 329 (562)
T ss_pred CCCCCCccCcHHHHH-hhhc-cCCccCCCCcceEEcCCCCEEEEEEcCCCcccCeEeCHHHHHHHHHHHHHHHhhhcccc
Confidence 677887788898888 7777 88 999 99999999999999988 89999999999999997652
Q ss_pred ----C-----CCeEEEcccCCHHHHHHHHH-cCCeEEEEecchHHHHHHHhhcCcCCcceeEEeecccc--eeccCCCc-
Q 027073 68 ----P-----GTTIVTDARTSMALTKFITD-RGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGH--GALKENYF- 134 (228)
Q Consensus 68 ----~-----~~~vv~~v~ss~~l~~ia~~-~g~~v~~t~vG~k~i~~~~~~~~~~~~~~~~g~E~sg~--~~~~~~~~- 134 (228)
+ +..||.|+.||..+++++++ .|+++++|+||.||+.++|.+.+. .++||.||| ++|+++..
T Consensus 330 ~~~~~~~~~l~~gVVqTayaNgast~yl~~~lg~~v~~t~tGvk~l~~~a~e~di-----gvyfEaNGHGTviFs~~~~~ 404 (562)
T PLN02895 330 GNEKPEELLVRLGVVQTAYANGASTAYLKQVLGLEVVCTPTGVKYLHEAAAEFDI-----GVYFEANGHGTVLFSERFLD 404 (562)
T ss_pred cccccccccCCCeEEEeccccHHHHHHHHHhcCCeEEEEeCchHHHHHHHHhcCc-----eEEEccCCCeEEEEChHHHH
Confidence 2 33699999999999999999 999999999999999999999875 799999999 99998765
Q ss_pred -----------------------------------CCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHhccccccCceeEE
Q 027073 135 -----------------------------------LDDGAYMVVKIIIQMVRMKLEGSDEGIGSLIKDLEEPLESIELRM 179 (228)
Q Consensus 135 -----------------------------------~~Dgi~a~~~ll~e~~a~~~~~~~~~L~~ll~~lp~~~~~~~~~i 179 (228)
.+|||+++++++ ++++. .+.+++++.+.++.+ .+...++
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~a~~~L~~~~~linq~vGDai~~~L~vl-~iL~~----~~~sl~e~~~~y~dl-P~~~~kv 478 (562)
T PLN02895 405 WLEAAAAELSSKAKGSEAHKAARRLLAVSRLINQAVGDALSGLLLVE-AILQY----RGWSLAEWNALYQDL-PSRQLKV 478 (562)
T ss_pred HHhhhhhccccccccchhhHHHHHHHHHHHhhcCCccHHHHHHHHHH-HHHHH----hCCCHHHHHhhCccC-CceeEee
Confidence 699999999777 78877 799999999954432 1123444
Q ss_pred EeccCc----cch-H-----HHHHHHHHHHhh-cccccceeeecCCCCCCceeEEEee
Q 027073 180 NIISEP----RYA-K-----AKGSEAIEEFRK-YIEVLGLQKTNSHSANETICLIIQT 226 (228)
Q Consensus 180 ~~~~~~----~~~-~-----~~~~~li~~~r~-~~~~gw~lv~~~~ps~~ep~~~~~~ 226 (228)
.+.... .+. + +..++.+| .+. .+++||+|| |||||||+|||..
T Consensus 479 ~V~dr~~~~t~~~e~~~v~P~~Lq~~ID-~~v~~~~~Gr~lv---RpSGTEp~vRv~~ 532 (562)
T PLN02895 479 KVADRTAITTTDAETVVVRPAGLQDAID-AEVAKYPRGRAFV---RPSGTEDVVRVYA 532 (562)
T ss_pred EEccCccccccchhhhcccHHHHHHHHH-HHhcccCCceEEE---EcCCCCcEEEEEE
Confidence 443221 121 1 33456677 555 668899999 9999999999974
No 37
>PF02880 PGM_PMM_III: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; InterPro: IPR005846 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain III found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B 3UW2_A 2F7L_B 3I3W_B 2Z0F_A ....
Probab=99.96 E-value=1.4e-28 Score=186.36 Aligned_cols=112 Identities=27% Similarity=0.430 Sum_probs=101.6
Q ss_pred cchhHHHHHHHHHHhhCCCC-eEEEcccCCHHHHHHHHHcCCeEEEEecchHHHHHHHhhcCcCCcceeEEeecccceec
Q 027073 51 NGDKLIALMSAIVLKEHPGT-TIVTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGAL 129 (228)
Q Consensus 51 ~~d~~~~Ll~~~ll~~~~~~-~vv~~v~ss~~l~~ia~~~g~~v~~t~vG~k~i~~~~~~~~~~~~~~~~g~E~sg~~~~ 129 (228)
+||++++|+++++++.+++. .||+|++||++++++|+++|+++++|+|||+||.+.|.+.++ +||||+|||++|
T Consensus 1 ~gd~~~al~a~~~l~~~~~~~~vv~~v~sS~~~~~~~~~~g~~~~~t~vG~~~i~~~~~~~~~-----~~ggE~sgg~~~ 75 (113)
T PF02880_consen 1 NGDELLALLADYLLEEHKPGGTVVVTVVSSRALDKIAEKHGGKVIRTKVGFKNIAEKMREENA-----VFGGEESGGFIF 75 (113)
T ss_dssp HHHHHHHHHHHHHHHCHTTTEEEEEETTS-THHHHHHHHTTSEEEEESSSHHHHHHHHHHTTE-----SEEEETTSEEEE
T ss_pred CcHHHHHHHHHHHHHhCCCCCEEEEeCHHHHHHHHHHHHCCCEEEEecCCcHHHHHHHhhhce-----eEEecccCeEEe
Confidence 58999999999999865433 699999999999999999999999999999999999999886 899999999999
Q ss_pred cCCCcCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHhccccc
Q 027073 130 KENYFLDDGAYMVVKIIIQMVRMKLEGSDEGIGSLIKDLEEPL 172 (228)
Q Consensus 130 ~~~~~~~Dgi~a~~~ll~e~~a~~~~~~~~~L~~ll~~lp~~~ 172 (228)
+++++++||++++++++ ++++. +|+||+++++++|++|
T Consensus 76 ~~~~~~~Dgi~a~~~~l-~~l~~----~~~~ls~ll~~l~~~Y 113 (113)
T PF02880_consen 76 PDFSYDKDGIYAALLLL-ELLAE----EGKTLSELLDELPKKY 113 (113)
T ss_dssp TTTESSE-HHHHHHHHH-HHHHH----HTS-HHHHHHHHHHHH
T ss_pred cCCCCCCcHHHHHHHHH-HHHHH----hCCCHHHHHHHHhccC
Confidence 99999999999999887 99998 8999999999999876
No 38
>KOG0625 consensus Phosphoglucomutase [Carbohydrate transport and metabolism]
Probab=99.89 E-value=2e-22 Score=177.85 Aligned_cols=190 Identities=16% Similarity=0.166 Sum_probs=152.9
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCcEEEEecCCCCeEEEEeCCCccccchhHHHHHHHHHHhhC----CC-CeEEEc
Q 027073 1 MFPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEH----PG-TTIVTD 75 (228)
Q Consensus 1 ~Fp~~~PnPe~~~~l~~l~~~v~~~~adlgia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~ll~~~----~~-~~vv~~ 75 (228)
+|++.||+|. -..-..|.+.|...+.|||.|+|+||||-.++-.+|-+++|..-.|++|.++...- .+ ..+..+
T Consensus 252 DFGG~HPDPN-LTYAk~LV~rv~~~~~~fGAA~DGDGDRNMIlG~~~fFVtPsDSvAiIA~na~~IPYF~~~Gv~GfARS 330 (558)
T KOG0625|consen 252 DFGGGHPDPN-LTYAKDLVDRVDRGEIDFGAAFDGDGDRNMILGKNGFFVTPSDSVAIIAANAEAIPYFRKQGVKGFARS 330 (558)
T ss_pred ccCCCCCCCc-hhhHHHHHHHhccCCCcccccccCCCcceeeeccCceeeccchhHHHHHhcchhcchhhhcCcchhhhc
Confidence 5999999995 67777888888899999999999999999999999999999999999999875431 12 348899
Q ss_pred ccCCHHHHHHHHHcCCeEEEEecchHHHHHHHhhcCcCCcceeEEeecccceeccCCCcCCCHHHHHHHHHHHHHHHhhc
Q 027073 76 ARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLE 155 (228)
Q Consensus 76 v~ss~~l~~ia~~~g~~v~~t~vG~k~i~~~~~~~~~~~~~~~~g~E~sg~~~~~~~~~~~Dgi~a~~~ll~e~~a~~~~ 155 (228)
..||.+++++|++.|.++.+||||+|++.+.|....- .+||||| .+.-.+|.+.+||++|.+.+| .++|.
T Consensus 331 mPTs~AlDrVak~~gl~~yEvPTGWKfF~nLmDAgkl-----siCGEES-FGTGSdHIREKDGiWAvlaWl-sIlA~--- 400 (558)
T KOG0625|consen 331 MPTSGALDRVAKKLGLPVYEVPTGWKFFGNLMDAGKL-----SICGEES-FGTGSDHIREKDGIWAVLAWL-SILAH--- 400 (558)
T ss_pred CCchhHHHHHHHHcCCceEEcCchHHHHHhhhcccce-----eeccccc-ccCCccccccccchhhHHHHH-HHHHh---
Confidence 9999999999999999999999999999999987664 6999999 445678999999999999999 67765
Q ss_pred CCCC-CHHHHHHhccccc-cCceeEEEeccCccchHHHHHHHHHHHhhcccc
Q 027073 156 GSDE-GIGSLIKDLEEPL-ESIELRMNIISEPRYAKAKGSEAIEEFRKYIEV 205 (228)
Q Consensus 156 ~~~~-~L~~ll~~lp~~~-~~~~~~i~~~~~~~~~~~~~~~li~~~r~~~~~ 205 (228)
+.. .+.+++.+.|..| .....|.+++. +..++ ..++|+.++....+
T Consensus 401 -~k~~~vedI~~~~W~~YGR~fftRYDYE~-~e~e~--ank~m~~l~a~~~~ 448 (558)
T KOG0625|consen 401 -NKQNVVEDIVKEHWAKYGRNFFTRYDYEE-VEAEG--ANKMMEDLEALVSD 448 (558)
T ss_pred -cccccHHHHHHHHHHHhCccceeecchhh-cChHh--HHHHHHHHHHHhcc
Confidence 333 3999999998888 33455555542 21111 23566666665543
No 39
>COG0033 Pgm Phosphoglucomutase [Carbohydrate transport and metabolism]
Probab=99.88 E-value=1.5e-23 Score=186.33 Aligned_cols=210 Identities=16% Similarity=0.084 Sum_probs=159.6
Q ss_pred CCCCCCCCCCC------hhHHHHHHHHHHhcCCcEEEEecCCCCeEEEEeCCCccccchhHHHHHHHHHHhhCC----CC
Q 027073 1 MFPNHIPNPED------KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHP----GT 70 (228)
Q Consensus 1 ~Fp~~~PnPe~------~~~l~~l~~~v~~~~adlgia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~ll~~~~----~~ 70 (228)
.|.+++|+|.- |..++.+.+. +.+.|||.+.|+||||-+|+.....+++|++.+++++.|+....+ ..
T Consensus 243 ~F~~l~~D~ni~~~~ss~~~ma~l~~~--~d~~d~~aanD~DgDR~~Iv~~~~~~~nPn~~lAv~~~y~~~~~~~~~g~~ 320 (524)
T COG0033 243 DFMGLDPDGNIRMDCSSPCAMAGLLRL--RDKYDFAAANDGDGDRHGIVTPGAGLMNPNHSLAVAIEYLFLHRPYWGGIV 320 (524)
T ss_pred cccCCCCCCCEeEecCcHHHHHHhhcc--ccccccccccCCCcccceeecCCCcccCchHHHHHHHHHHHhCCCccccce
Confidence 48889999953 2234433332 488999999999999999999988999999999999999988754 24
Q ss_pred eEEEcccCCHHHHHHHHHcCCeEEEEecchHHHHHHHhhcCcCCcceeEEeecccceeccCCCcCCCHHHHHHHHHHHHH
Q 027073 71 TIVTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIQMV 150 (228)
Q Consensus 71 ~vv~~v~ss~~l~~ia~~~g~~v~~t~vG~k~i~~~~~~~~~~~~~~~~g~E~sg~~~~~~~~~~~Dgi~a~~~ll~e~~ 150 (228)
.|..|++||.+++++++.+|..+++|||||||+.+.+..... -||||||-| ..|++.+||+++..+.+ .++
T Consensus 321 ~v~ktl~sS~~iDRV~~~lGr~lyEvPvG~K~F~~~l~~g~~-----~~~GEESaG---a~~lRek~g~Wa~~~~~-~Il 391 (524)
T COG0033 321 AVGKTLVSSAAIDRVVAKLGRGLYEVPVGFKWFVDGLDAGSF-----GFGGEESAG---ASFLREKGGVWATDKDG-NIL 391 (524)
T ss_pred eeeeccccHHHHHHHHHHhCCceEEcCCcceeeeccccccce-----eeccccccc---ccceecCCCceeeechh-HHH
Confidence 589999999999999999999999999999999999877664 699999943 55777788887766544 333
Q ss_pred HHhh----cCCCCCHHHHHHhccccc-cCceeEEEeccCccchHHHH----------------------------HHHHH
Q 027073 151 RMKL----EGSDEGIGSLIKDLEEPL-ESIELRMNIISEPRYAKAKG----------------------------SEAIE 197 (228)
Q Consensus 151 a~~~----~~~~~~L~~ll~~lp~~~-~~~~~~i~~~~~~~~~~~~~----------------------------~~li~ 197 (228)
+.+- +..++..++...++-+.| ...+.++.++...+ .+... .+-+.
T Consensus 392 all~aei~a~t~~~~~~~y~~~~r~~~~~~Yervda~aa~~-~~a~L~~ls~~~v~~t~l~g~~~~a~~~~~~Gn~s~~~ 470 (524)
T COG0033 392 ALLAAEITAVTGKIPQEHYAELGRNFGRPDYERVDAEAANA-QKARLRKLSPEMVSATTLAGDPITAYLTPAPGNGAAIG 470 (524)
T ss_pred HHHhhhchhhhccCHHHHHHHHHHHhCcccHHHhcCchhHH-HHHHHHhhCcccCCccccCCCcchhcccCCCCchhhcC
Confidence 3211 236777888888876555 34467777663221 11100 24566
Q ss_pred HHhhcccccceeeecCCCCCCceeEEEe
Q 027073 198 EFRKYIEVLGLQKTNSHSANETICLIIQ 225 (228)
Q Consensus 198 ~~r~~~~~gw~lv~~~~ps~~ep~~~~~ 225 (228)
|+|..+++||+-. ||||||-.+||-
T Consensus 471 GLkV~~~ng~fa~---R~SGT~~t~kiY 495 (524)
T COG0033 471 GLKVTTENGWFAA---RPSGTEATYKIY 495 (524)
T ss_pred ceEEEeeCcEEEE---ecCCcchhhhhh
Confidence 8999999999999 999999998874
No 40
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=99.25 E-value=9.5e-12 Score=92.44 Aligned_cols=46 Identities=52% Similarity=0.858 Sum_probs=42.6
Q ss_pred CCCC-CCCCCCChhHHHHHHHHHHhcCCcEEEEecCCCCeEEEEeCCC
Q 027073 1 MFPN-HIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKG 47 (228)
Q Consensus 1 ~Fp~-~~PnPe~~~~l~~l~~~v~~~~adlgia~D~DgDR~~vvd~~G 47 (228)
.||+ +.|||+. ++++.+.+.+++.++|+|+++||||||++++|++|
T Consensus 58 ~f~~~~~p~p~~-~~l~~~~~~v~~~~ad~g~~~DgDaDRl~~vd~~G 104 (104)
T PF02879_consen 58 DFPNQHAPNPEE-ESLQRLIKIVRESGADLGIAFDGDADRLGVVDENG 104 (104)
T ss_dssp TGTTTSTSSTST-TTTHHHHHHHHHSTTSEEEEE-TTSSBEEEEETTS
T ss_pred cccccccccccc-chhHHHHHHhhccCceEEEEECCcCceeEEECCCC
Confidence 4888 9999985 99999999999999999999999999999999987
No 41
>KOG2537 consensus Phosphoglucomutase/phosphomannomutase [Carbohydrate transport and metabolism]
Probab=99.16 E-value=8.6e-10 Score=100.39 Aligned_cols=180 Identities=14% Similarity=0.187 Sum_probs=121.8
Q ss_pred EEEEecCCCCeEEEE--eCCC--ccccchhHHHHHHHHHHhhCC------CCeEEEcccCCHHHHHHHHH-cCCeEEEEe
Q 027073 29 LGVVFDTDVDRSGVV--DNKG--NPINGDKLIALMSAIVLKEHP------GTTIVTDARTSMALTKFITD-RGGNHCLYR 97 (228)
Q Consensus 29 lgia~D~DgDR~~vv--d~~G--~~l~~d~~~~Ll~~~ll~~~~------~~~vv~~v~ss~~l~~ia~~-~g~~v~~t~ 97 (228)
....||||+||+..+ ++++ +++.||.+..+++.|+-+... ...||.|.-|+..-.+.... .++.++.++
T Consensus 279 ~caSfDGDADRlvyf~~~~~~~f~llDGDkistlla~~l~~ll~~~~~~l~~GvVqtaYaNgast~yl~~~l~~~vv~v~ 358 (539)
T KOG2537|consen 279 RCASFDGDADRLVYFYIDDDSEFHLLDGDKIATLIAGYLRELLKQIELSLRLGVVQTAYANGASTDYLKETLKFPVVCVP 358 (539)
T ss_pred ceeeeecccceeEEEEecCCceeEeecchHHHHHHHHHHHHHHHHhhccceeeeEEEEeecCccHhhhhhhcCCceEEec
Confidence 457899999997766 6666 999999999999999855421 34588888888777777766 999999999
Q ss_pred cchHHHHHHHhhcCcCCcceeEEeecccceec--cCCC-------------------------------cCCCHHHHHHH
Q 027073 98 VGYRNVIDKGVHLNEDGIETHLMMETSGHGAL--KENY-------------------------------FLDDGAYMVVK 144 (228)
Q Consensus 98 vG~k~i~~~~~~~~~~~~~~~~g~E~sg~~~~--~~~~-------------------------------~~~Dgi~a~~~ 144 (228)
+|-|++..+..+... -.-+|.+||+.. .+-. ...|++.-.+.
T Consensus 359 tGvKhlh~~A~efDi-----GiyFEaNGHGti~FS~~~~~~i~~~~~~~~~~~~~a~~~L~~~~~Linq~vGDAisd~ll 433 (539)
T KOG2537|consen 359 TGVKHLHHAAAEFDI-----GIYFEANGHGTILFSEAFLATIKDLAETKEPGESKALKTLKLLSDLINQTVGDAISDMLA 433 (539)
T ss_pred cccchHHHHHHhhcc-----eeEEeccCccceeehHHHHHhhhhhhhCCCccchHHHHHHHHHHhhhcccchhhhcchHH
Confidence 999999999886553 133688887653 2211 12344433332
Q ss_pred HHHHHHHHhhcCCCCCHHHHHH---hccccccCceeEEEeccCc----cc------hHHHHHHHHHHHhhcccccceeee
Q 027073 145 IIIQMVRMKLEGSDEGIGSLIK---DLEEPLESIELRMNIISEP----RY------AKAKGSEAIEEFRKYIEVLGLQKT 211 (228)
Q Consensus 145 ll~e~~a~~~~~~~~~L~~ll~---~lp~~~~~~~~~i~~~~~~----~~------~~~~~~~li~~~r~~~~~gw~lv~ 211 (228)
+.+ .++ ..+.+..++-+ ++|.+ ..++.++... .+ .+...++-||..-..++.|+.++
T Consensus 434 v~~-il~----~~~~s~~~w~e~y~dlPnr----q~Kv~v~Dr~i~~ttdaer~~v~P~glQ~~Ida~vaky~~gRaFv- 503 (539)
T KOG2537|consen 434 VEA-ILA----HKGWSVQDWDELYRDLPNR----QLKVKVPDRSIIKTTDAERQLVKPVGLQDKIDALVAKYKRGRSFV- 503 (539)
T ss_pred HHH-HHH----hcCCCHHHHHHHhcCCccc----eEEEEeccceeeechhhhhhcCCcHHHHHHHHHHHhhccCCceEE-
Confidence 221 122 24655555544 44433 4455544211 11 23344577888888888999999
Q ss_pred cCCCCCCceeEEEe
Q 027073 212 NSHSANETICLIIQ 225 (228)
Q Consensus 212 ~~~ps~~ep~~~~~ 225 (228)
||||||-++||-
T Consensus 504 --R~SGTEdvVRVY 515 (539)
T KOG2537|consen 504 --RPSGTEDVVRVY 515 (539)
T ss_pred --eccCccceEEEE
Confidence 999999999985
No 42
>PF00408 PGM_PMM_IV: Phosphoglucomutase/phosphomannomutase, C-terminal domain; InterPro: IPR005843 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents the C-terminal domain alpha-D-phosphohexomutase enzymes.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 1KFQ_B 1KFI_A 3PDK_B 2F7L_A 1TUO_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=98.21 E-value=6.4e-07 Score=62.28 Aligned_cols=29 Identities=7% Similarity=-0.059 Sum_probs=26.3
Q ss_pred HHHHHhhccccccee-eecCCCCCCceeEEEee
Q 027073 195 AIEEFRKYIEVLGLQ-KTNSHSANETICLIIQT 226 (228)
Q Consensus 195 li~~~r~~~~~gw~l-v~~~~ps~~ep~~~~~~ 226 (228)
..++++..++|||.+ | |||||||+||+..
T Consensus 24 ~~~~~~~~~~dG~~l~v---R~SgTEP~iRv~~ 53 (73)
T PF00408_consen 24 TIDGIKILFEDGWRLLV---RPSGTEPKIRVYV 53 (73)
T ss_dssp HHHCEEEEETTEEEEEE---EEESSSSEEEEEE
T ss_pred ccceEEEECCCceEEEE---ECCCCCceEEEEE
Confidence 678999999999888 9 9999999999864
No 43
>TIGR01123 ilvE_II branched-chain amino acid aminotransferase, group II. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family less similar to the DAAT family.
Probab=75.05 E-value=17 Score=31.86 Aligned_cols=73 Identities=16% Similarity=0.119 Sum_probs=51.2
Q ss_pred HHHHHhcCCcEEEEecCCCC---------eEEEEeCCCccccchhHHHHHHHHHHhhCCCCeEEEcccCCHHHHHHHHHc
Q 027073 19 RAAVLENNADLGVVFDTDVD---------RSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDR 89 (228)
Q Consensus 19 ~~~v~~~~adlgia~D~DgD---------R~~vvd~~G~~l~~d~~~~Ll~~~ll~~~~~~~vv~~v~ss~~l~~ia~~~ 89 (228)
.+.+++.++|=++.+|+||+ -++++.++|.+++|.. ...++--+ +-..+-+++++.
T Consensus 167 ~~eA~~~g~deal~ld~~g~g~v~E~~~sNlf~v~~~g~l~Tp~l--------------~~~~L~GI-tR~~vi~l~~~~ 231 (313)
T TIGR01123 167 QAKAAEQGCDQVVYLDPVEHTYIEEVGAMNFFFITGDGELVTPPL--------------SGSILPGI-TRDSLLQLAKDL 231 (313)
T ss_pred HHHHHHCCCCEEEEEeCCCCeEEEEcCcEeEEEEEcCCEEEeCCC--------------CCCCCcch-HHHHHHHHHHHc
Confidence 46667789999999999998 4666666667766641 11233333 334455788999
Q ss_pred CCeEEEEecchHHHHHH
Q 027073 90 GGNHCLYRVGYRNVIDK 106 (228)
Q Consensus 90 g~~v~~t~vG~k~i~~~ 106 (228)
|..|.+.++....+.+.
T Consensus 232 Gi~v~e~~i~~~~l~~A 248 (313)
T TIGR01123 232 GMEVEERRIDIDELKAF 248 (313)
T ss_pred CCeEEEEecCHHHHHHH
Confidence 99999999988877654
No 44
>PF11576 DUF3236: Protein of unknown function (DUF3236); InterPro: IPR012019 This family of proteins with unknown function appears to be restricted to Methanobacteria. ; PDB: 3BRC_B.
Probab=73.88 E-value=4.5 Score=31.69 Aligned_cols=52 Identities=19% Similarity=0.214 Sum_probs=32.6
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCcEEEE-----ecCCCCeEEEEeCCCccccch
Q 027073 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVV-----FDTDVDRSGVVDNKGNPINGD 53 (228)
Q Consensus 2 Fp~~~PnPe~~~~l~~l~~~v~~~~adlgia-----~D~DgDR~~vvd~~G~~l~~d 53 (228)
+||..++=....++....-.+...+||+.|| .-|.|.=+.+.|++|+++++.
T Consensus 68 i~Tn~aDlTrmPA~~K~LmavD~~dADlvIARGRLGvPGSGSmlvimD~kGRiLtas 124 (154)
T PF11576_consen 68 IPTNSADLTRMPALSKALMAVDISDADLVIARGRLGVPGSGSMLVIMDSKGRILTAS 124 (154)
T ss_dssp S--GGGGGSSSHHHHHHHHHHHHH--SEEEEEEE-SSTTS-EEEEEEETTS-EEEEE
T ss_pred ccCcchhcccCcHHHhHHHheeccCCcEEEEcccccCCCCccEEEEEcCCCcEEeec
Confidence 4454444444445666666778889999998 467777788889999998763
No 45
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=65.85 E-value=54 Score=31.58 Aligned_cols=144 Identities=17% Similarity=0.168 Sum_probs=76.7
Q ss_pred EEEEeCCCccccchhHHHHHHHHHHhhCC-CC-eEEEcccCCHHHHHHHHHcCCeEEEEecchHHHHHHHhhcCcCCcce
Q 027073 40 SGVVDNKGNPINGDKLIALMSAIVLKEHP-GT-TIVTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGVHLNEDGIET 117 (228)
Q Consensus 40 ~~vvd~~G~~l~~d~~~~Ll~~~ll~~~~-~~-~vv~~v~ss~~l~~ia~~~g~~v~~t~vG~k~i~~~~~~~~~~~~~~ 117 (228)
..++|+.-..+.++-+.--+++.+..+.. .- .-..+...+.-++++|+..--.+.+..+|.++......+.+ .
T Consensus 291 ~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~Qe-----l 365 (593)
T KOG0344|consen 291 WLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQE-----L 365 (593)
T ss_pred eEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhh-----h
Confidence 45556655666662222223333333322 11 11123667888999999988889999999997765544443 3
Q ss_pred eEEeecccceeccCCCcCCCHHHHHHHHHHHHHHHhhc-------CCCCCHHHHHHhccccccCceeEEEeccCccchHH
Q 027073 118 HLMMETSGHGALKENYFLDDGAYMVVKIIIQMVRMKLE-------GSDEGIGSLIKDLEEPLESIELRMNIISEPRYAKA 190 (228)
Q Consensus 118 ~~g~E~sg~~~~~~~~~~~Dgi~a~~~ll~e~~a~~~~-------~~~~~L~~ll~~lp~~~~~~~~~i~~~~~~~~~~~ 190 (228)
+|||-+-|- +.|+ . ++++.-++ .+-..=.+++.+|+.+ ..+++++.-.... ..
T Consensus 366 vF~gse~~K-------------~lA~--r-q~v~~g~~PP~lIfVQs~eRak~L~~~L~~~---~~i~v~vIh~e~~-~~ 425 (593)
T KOG0344|consen 366 VFCGSEKGK-------------LLAL--R-QLVASGFKPPVLIFVQSKERAKQLFEELEIY---DNINVDVIHGERS-QK 425 (593)
T ss_pred eeeecchhH-------------HHHH--H-HHHhccCCCCeEEEEecHHHHHHHHHHhhhc---cCcceeeEecccc-hh
Confidence 788866542 2222 2 44432000 0001124555555522 4566666522222 22
Q ss_pred HHHHHHHHHhhcccccceee
Q 027073 191 KGSEAIEEFRKYIEVLGLQK 210 (228)
Q Consensus 191 ~~~~li~~~r~~~~~gw~lv 210 (228)
+..+.|+++|.- .=|+|+
T Consensus 426 qrde~~~~FR~g--~IwvLi 443 (593)
T KOG0344|consen 426 QRDETMERFRIG--KIWVLI 443 (593)
T ss_pred HHHHHHHHHhcc--CeeEEE
Confidence 335889999873 129998
No 46
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=64.07 E-value=9.3 Score=34.28 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=29.9
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHhcCCcEEEEecC
Q 027073 1 MFPNHIPNPEDKTAMALTRAAVLENNADLGVVFDT 35 (228)
Q Consensus 1 ~Fp~~~PnPe~~~~l~~l~~~v~~~~adlgia~D~ 35 (228)
.|.|.-|||. -+.+....+++++++.||.+|.-|
T Consensus 61 E~~GVEPNP~-~~Tv~kaV~i~kee~idflLAVGG 94 (384)
T COG1979 61 EFGGVEPNPR-LETLMKAVEICKEENIDFLLAVGG 94 (384)
T ss_pred EecCCCCCch-HHHHHHHHHHHHHcCceEEEEecC
Confidence 3788999996 788888999999999999999854
No 47
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=50.71 E-value=89 Score=26.16 Aligned_cols=52 Identities=15% Similarity=0.252 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHHhcCCcEEEEecCC-----CCeEEEEeCCCc--cccchhHHHHHHHHH
Q 027073 12 KTAMALTRAAVLENNADLGVVFDTD-----VDRSGVVDNKGN--PINGDKLIALMSAIV 63 (228)
Q Consensus 12 ~~~l~~l~~~v~~~~adlgia~D~D-----gDR~~vvd~~G~--~l~~d~~~~Ll~~~l 63 (228)
.+.++...+...+.++|+.+|.|-+ ..+..+++.+|. ..+-.++...+++.+
T Consensus 166 ~~l~~~a~~kl~~~~~d~vvaN~~~~~~~~~~~~~~i~~~~~~~~~~K~~~a~~i~~~~ 224 (229)
T PRK06732 166 EELIKVARASLIKNQADYILANDLTDISADQHKALLVSKNEVYTAQTKEEIADLLLERI 224 (229)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecccccCCCCcEEEEEeCCCeeeCCCHHHHHHHHHHHH
Confidence 4567777888888999999998873 556778887773 222344444444443
No 48
>COG4019 Uncharacterized protein conserved in archaea [Function unknown]
Probab=48.74 E-value=38 Score=26.10 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=31.8
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCcEEEEe-----cCCCCeEEEEeCCCccccc
Q 027073 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVF-----DTDVDRSGVVDNKGNPING 52 (228)
Q Consensus 2 Fp~~~PnPe~~~~l~~l~~~v~~~~adlgia~-----D~DgDR~~vvd~~G~~l~~ 52 (228)
||++..+-....++....=.+.-.+||+.||- -|.|.=+.+.|++|++++.
T Consensus 69 ~~T~~ADlTrmPA~tKalmaldis~ADlvIARGRLGvPGSGsmlVimD~rgRlLtA 124 (156)
T COG4019 69 IDTRFADLTRMPALTKALMALDISKADLVIARGRLGVPGSGSMLVIMDERGRLLTA 124 (156)
T ss_pred CccchhhcccChHHHHHHHhccccCCcEEEeeccccCCCCCcEEEEEccccceeee
Confidence 44544433322234434444556789999884 5677767777999997665
No 49
>PRK08868 flagellar protein FlaG; Provisional
Probab=46.97 E-value=97 Score=24.37 Aligned_cols=50 Identities=16% Similarity=0.281 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHhcCCcEEEEecCCCCeEEE--Ee-CCC---ccccchhHHHHHHHH
Q 027073 13 TAMALTRAAVLENNADLGVVFDTDVDRSGV--VD-NKG---NPINGDKLIALMSAI 62 (228)
Q Consensus 13 ~~l~~l~~~v~~~~adlgia~D~DgDR~~v--vd-~~G---~~l~~d~~~~Ll~~~ 62 (228)
++++.+.+.+...+-+|-|-.|.|.+|+.| +| +.| |-|.+++++.|....
T Consensus 75 ~aVeklNe~~~~~n~~L~F~vdeetgr~VVkViD~~T~EVIRQIP~Ee~L~la~~l 130 (144)
T PRK08868 75 KMVEQMNEFVKSINKGLSFRVDEESGRDVVTIYEASTGDIIRQIPDEEMLEVLRRL 130 (144)
T ss_pred HHHHHHHHHHHhhcCceEEEEecCCCCEEEEEEECCCCceeeeCCCHHHHHHHHHH
Confidence 467777778888899999999999999554 46 456 677889988887654
No 50
>PRK08452 flagellar protein FlaG; Provisional
Probab=46.05 E-value=1.2e+02 Score=23.15 Aligned_cols=50 Identities=12% Similarity=0.193 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHhcCCcEEEEecCCCCeEEE--EeCC-C---ccccchhHHHHHHHH
Q 027073 13 TAMALTRAAVLENNADLGVVFDTDVDRSGV--VDNK-G---NPINGDKLIALMSAI 62 (228)
Q Consensus 13 ~~l~~l~~~v~~~~adlgia~D~DgDR~~v--vd~~-G---~~l~~d~~~~Ll~~~ 62 (228)
+..+.+-+.+...+.+|=|.+|.+.+|+.| +|.+ | |-+.+++++-|....
T Consensus 57 ~~ve~lN~~~~~~~~~L~F~~de~~~~~vVkVvD~~T~eVIRqIP~Ee~L~l~~~m 112 (124)
T PRK08452 57 ELTEKLNEEMKRLDTNIRFGYNDKIKGLVVSVKEANGGKVIREIPSKEAIELMEYM 112 (124)
T ss_pred HHHHHHHHHHHhhCCceEEEEcCCCCcEEEEEEECCCCceeeeCCCHHHHHHHHHH
Confidence 345556666677888999999999999554 4654 5 667888888877654
No 51
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=45.53 E-value=28 Score=19.96 Aligned_cols=19 Identities=21% Similarity=-0.123 Sum_probs=15.9
Q ss_pred EEEEecCCCCeEEEEeCCC
Q 027073 29 LGVVFDTDVDRSGVVDNKG 47 (228)
Q Consensus 29 lgia~D~DgDR~~vvd~~G 47 (228)
-|+++|++++|+...|..-
T Consensus 12 ~~la~d~~~~~lYw~D~~~ 30 (43)
T smart00135 12 NGLAVDWIEGRLYWTDWGL 30 (43)
T ss_pred CEEEEeecCCEEEEEeCCC
Confidence 3799999999999988654
No 52
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=44.07 E-value=1.3e+02 Score=22.35 Aligned_cols=71 Identities=27% Similarity=0.402 Sum_probs=48.3
Q ss_pred CCC-CCCCCCChh--HHHHHHHHHHhcCCcEEEEecCCCCeEEEEeCC-CccccchhHHHHHHHHHHhhCCCCeEEEccc
Q 027073 2 FPN-HIPNPEDKT--AMALTRAAVLENNADLGVVFDTDVDRSGVVDNK-GNPINGDKLIALMSAIVLKEHPGTTIVTDAR 77 (228)
Q Consensus 2 Fp~-~~PnPe~~~--~l~~l~~~v~~~~adlgia~D~DgDR~~vvd~~-G~~l~~d~~~~Ll~~~ll~~~~~~~vv~~v~ 77 (228)
+|| +.=|++... .|+++.++|++ |..+.|+|.+ |+-++.. +|+..+++...++ .++-
T Consensus 6 Y~NRRLYDT~tS~YITLedi~~lV~~------------g~~f~V~DakTgeDiT~~----iL~QII~E~E~~g---~~~l 66 (107)
T TIGR01848 6 YPNRRLYDTETSSYVTLEDIRDLVRE------------GREFQVVDSKSGDDLTRS----ILLQIIAEEESGG---EPVL 66 (107)
T ss_pred cCCCcccCCCccceeeHHHHHHHHHC------------CCeEEEEECCCCchhHHH----HHHHHHHHHHhCC---CCCC
Confidence 466 555665433 68888888864 5778899876 6655554 5555555553332 3677
Q ss_pred CCHHHHHHHHHcCC
Q 027073 78 TSMALTKFITDRGG 91 (228)
Q Consensus 78 ss~~l~~ia~~~g~ 91 (228)
++.++..+++.+|-
T Consensus 67 p~~~L~qlIr~yg~ 80 (107)
T TIGR01848 67 STDFLTQIIRFYGG 80 (107)
T ss_pred CHHHHHHHHHHhCh
Confidence 88899999998874
No 53
>PRK07544 branched-chain amino acid aminotransferase; Validated
Probab=43.93 E-value=1.6e+02 Score=25.41 Aligned_cols=69 Identities=10% Similarity=0.011 Sum_probs=44.6
Q ss_pred HHHHHhcCCcEEEEecCCCC-------eEEEEeCCCccccchhHHHHHHHHHHhhCCCCeEEEcccCCHHHHHHHHHcCC
Q 027073 19 RAAVLENNADLGVVFDTDVD-------RSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDRGG 91 (228)
Q Consensus 19 ~~~v~~~~adlgia~D~DgD-------R~~vvd~~G~~l~~d~~~~Ll~~~ll~~~~~~~vv~~v~ss~~l~~ia~~~g~ 91 (228)
.+.+++.++|-++.+|.||. -++++. +|.+++|.. . .++--+ +-..+-++|++.|.
T Consensus 169 ~~~A~~~G~deal~ld~~g~V~E~~~sNlf~v~-~~~l~TP~~--------------~-~~L~GI-tR~~vl~~a~~~g~ 231 (292)
T PRK07544 169 KHAAEAKGYADALMLDYRGYVAEATGANIFFVK-DGVIHTPTP--------------D-CFLDGI-TRQTVIELAKRRGI 231 (292)
T ss_pred HHHHHHcCCCeEEEECCCCCEEEcCceEEEEEE-CCEEECCCC--------------c-ccccch-hHHHHHHHHHHcCC
Confidence 55667889999999999884 234443 456666641 1 122222 23344567888999
Q ss_pred eEEEEecchHHHH
Q 027073 92 NHCLYRVGYRNVI 104 (228)
Q Consensus 92 ~v~~t~vG~k~i~ 104 (228)
+|.+.++....+.
T Consensus 232 ~v~e~~i~~~eL~ 244 (292)
T PRK07544 232 EVVERHIMPEELA 244 (292)
T ss_pred eEEEEecCHHHHh
Confidence 9999998876553
No 54
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=42.38 E-value=71 Score=23.23 Aligned_cols=50 Identities=22% Similarity=0.308 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHhcCCcEEEEecCCCCeEEE--EeC-CC---ccccchhHHHHHHHH
Q 027073 13 TAMALTRAAVLENNADLGVVFDTDVDRSGV--VDN-KG---NPINGDKLIALMSAI 62 (228)
Q Consensus 13 ~~l~~l~~~v~~~~adlgia~D~DgDR~~v--vd~-~G---~~l~~d~~~~Ll~~~ 62 (228)
++++.+.+.+...+..|-|.+|.|.+|+.+ +|. .| +-|.+++++-|....
T Consensus 41 ~~v~~ln~~~~~~~~~l~F~vde~~~~~vVkViD~~T~eVIRqIP~Ee~l~l~~~l 96 (107)
T PF03646_consen 41 EAVEKLNEFLQALNTSLRFSVDEESGRVVVKVIDKETGEVIRQIPPEELLDLAKRL 96 (107)
T ss_dssp HHHHHHHHHHTTSS--EEEEEEEETTEEEEEEEETTT-SEEEEE-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCceEEEEecCCCcEEEEEEECCCCcEEEeCCcHHHHHHHHHH
Confidence 356666677777789999999999999544 475 57 557888888776543
No 55
>PRK06680 D-amino acid aminotransferase; Reviewed
Probab=40.94 E-value=97 Score=26.70 Aligned_cols=69 Identities=14% Similarity=0.114 Sum_probs=40.1
Q ss_pred HHHHHhcCCcEEEEecCCCC-------eEEEEeCCCccccchhHHHHHHHHHHhhCCCCeEEEcccCCHHHHHHHHHcCC
Q 027073 19 RAAVLENNADLGVVFDTDVD-------RSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDRGG 91 (228)
Q Consensus 19 ~~~v~~~~adlgia~D~DgD-------R~~vvd~~G~~l~~d~~~~Ll~~~ll~~~~~~~vv~~v~ss~~l~~ia~~~g~ 91 (228)
.+.+++.++|-++.+| ||. -+++++.+|.+++|. ....++..++- ..+-++|++.|.
T Consensus 160 ~~eA~~~g~dd~l~ld-~g~v~E~~~sN~f~~~~~~~l~TP~--------------~~~~iL~Gitr-~~il~~a~~~g~ 223 (286)
T PRK06680 160 KQAAKEAGAQEAWMVD-DGFVTEGASSNAWIVTKDGKLVTRP--------------ADNFILPGITR-HTLIDLAKELGL 223 (286)
T ss_pred HHHHHHCCCCEEEEec-CCEEEEcCcEEEEEEEECCEEEeCC--------------CCCCCCcCHHH-HHHHHHHHHcCC
Confidence 4556778999999999 772 122222233333331 01113333322 344467889999
Q ss_pred eEEEEecchHHH
Q 027073 92 NHCLYRVGYRNV 103 (228)
Q Consensus 92 ~v~~t~vG~k~i 103 (228)
+|.+.++....+
T Consensus 224 ~v~e~~i~~~el 235 (286)
T PRK06680 224 EVEERPFTLQEA 235 (286)
T ss_pred eEEEEcCCHHHH
Confidence 999999876654
No 56
>PRK09620 hypothetical protein; Provisional
Probab=40.35 E-value=1.4e+02 Score=25.13 Aligned_cols=52 Identities=10% Similarity=0.052 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHhcCCcEEEEecCCC-----CeEEEEeCCCccc---cchhHHHHHHHHHH
Q 027073 13 TAMALTRAAVLENNADLGVVFDTDV-----DRSGVVDNKGNPI---NGDKLIALMSAIVL 64 (228)
Q Consensus 13 ~~l~~l~~~v~~~~adlgia~D~Dg-----DR~~vvd~~G~~l---~~d~~~~Ll~~~ll 64 (228)
+.++...+..++.++|+.+|.|-++ +.+.+++.+|... +-.++...+++.+.
T Consensus 161 ~l~~~A~~kl~~k~~D~ivaN~~~~~~g~~~~~~ii~~~~~~~~~~~K~~iA~~i~~~i~ 220 (229)
T PRK09620 161 ELFERAKNRMEEAKASVMIANSPHSLYSRGAMHYVIGQDGKGQLCNGKDETAKEIVKRLE 220 (229)
T ss_pred HHHHHHHHHHHHcCCCEEEECCcccccCCCcEEEEEeCCCccccCCCHHHHHHHHHHHHH
Confidence 4567788888899999999998742 4577778777422 22344444444443
No 57
>PRK07738 flagellar protein FlaG; Provisional
Probab=39.25 E-value=1.7e+02 Score=22.15 Aligned_cols=50 Identities=16% Similarity=0.215 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHhcCCcEEEEecCCCCeEE--EEeC-CC---ccccchhHHHHHHHH
Q 027073 13 TAMALTRAAVLENNADLGVVFDTDVDRSG--VVDN-KG---NPINGDKLIALMSAI 62 (228)
Q Consensus 13 ~~l~~l~~~v~~~~adlgia~D~DgDR~~--vvd~-~G---~~l~~d~~~~Ll~~~ 62 (228)
+.++.+.+.+...+-+|=|..|.+.+|+. |+|. .| +-+.+++++-++...
T Consensus 50 ~aveklN~~l~~~~~~L~F~vdeet~~~vVkVvD~~T~EVIRQIPpEe~L~l~~~m 105 (117)
T PRK07738 50 EVVDGMNELLEPSQTSLKFELHEKLNEYYVQVVDERTNEVIREIPPKKLLDMYAAM 105 (117)
T ss_pred HHHHHHHHHHHhcCCceEEEEecCCCcEEEEEEECCCCeeeeeCCCHHHHHHHHHH
Confidence 45666677777788999999999999955 4575 46 667888888877654
No 58
>PF10879 DUF2674: Protein of unknown function (DUF2674); InterPro: IPR024246 This family of proteins with unknown function appears to be restricted to Rickettsia spp.
Probab=38.98 E-value=18 Score=23.64 Aligned_cols=17 Identities=29% Similarity=0.104 Sum_probs=15.1
Q ss_pred HHHHHHhhcccccceee
Q 027073 194 EAIEEFRKYIEVLGLQK 210 (228)
Q Consensus 194 ~li~~~r~~~~~gw~lv 210 (228)
.-+++++...++||..|
T Consensus 16 adierikk~ieegwaiv 32 (67)
T PF10879_consen 16 ADIERIKKSIEEGWAIV 32 (67)
T ss_pred hhHHHHHHHHhcCeEEE
Confidence 56889999999999987
No 59
>cd01558 D-AAT_like D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids. It plays a major role in the synthesis of bacterial cell wall components like D-alanine and D-glutamate in addition to other D-amino acids. The enzyme like other members of this superfamily requires PLP as a cofactor. Members of this subgroup are found in all three forms of life.
Probab=38.21 E-value=1.5e+02 Score=25.09 Aligned_cols=70 Identities=13% Similarity=0.124 Sum_probs=41.2
Q ss_pred HHHHHhcCCcEEEEecCCCC-------eEEEEeCCCccccchhHHHHHHHHHHhhCCCCeEEEcccCCHHHHHHHHHcCC
Q 027073 19 RAAVLENNADLGVVFDTDVD-------RSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDRGG 91 (228)
Q Consensus 19 ~~~v~~~~adlgia~D~DgD-------R~~vvd~~G~~l~~d~~~~Ll~~~ll~~~~~~~vv~~v~ss~~l~~ia~~~g~ 91 (228)
.+.+++.++|-++.+|+||. -++++. +|.+++|.. ...++.-++-. .+-+++++.|.
T Consensus 153 ~~~a~~~g~de~l~ld~~g~v~E~~~sNif~~~-~~~l~TP~~--------------~~~~L~GitR~-~vl~~a~~~g~ 216 (270)
T cd01558 153 KQEAKEAGADEAILLDADGLVTEGSSSNVFIVK-NGVLVTPPL--------------DNGILPGITRA-TVIELAKELGI 216 (270)
T ss_pred HHHHHHcCCCEEEEEcCCCEEEEcCcEEEEEEE-CCEEECCCC--------------cCCCCCChHHH-HHHHHHHHcCC
Confidence 45566789999999999883 122222 234444420 11133333223 33366788899
Q ss_pred eEEEEecchHHHH
Q 027073 92 NHCLYRVGYRNVI 104 (228)
Q Consensus 92 ~v~~t~vG~k~i~ 104 (228)
+|.+..+....+.
T Consensus 217 ~v~e~~i~~~eL~ 229 (270)
T cd01558 217 PVEERPFSLEELY 229 (270)
T ss_pred eEEEEeCCHHHHh
Confidence 9999988776653
No 60
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=36.75 E-value=1.7e+02 Score=23.25 Aligned_cols=21 Identities=19% Similarity=0.146 Sum_probs=14.0
Q ss_pred HHHHHHHHhcCCcEEEEecCC
Q 027073 16 ALTRAAVLENNADLGVVFDTD 36 (228)
Q Consensus 16 ~~l~~~v~~~~adlgia~D~D 36 (228)
+.|.......+..+.++||+-
T Consensus 33 ~~L~~y~~~~~~~v~VVFDa~ 53 (166)
T PF05991_consen 33 EMLSEYAQFSGYEVIVVFDAY 53 (166)
T ss_pred HHHHHHhcccCCEEEEEEeCC
Confidence 334444445678999999974
No 61
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=36.68 E-value=76 Score=25.17 Aligned_cols=30 Identities=10% Similarity=0.162 Sum_probs=24.7
Q ss_pred CCCCeEEEEeCCCccccchhHHHHHHHHHH
Q 027073 35 TDVDRSGVVDNKGNPINGDKLIALMSAIVL 64 (228)
Q Consensus 35 ~DgDR~~vvd~~G~~l~~d~~~~Ll~~~ll 64 (228)
+++|.+.+.|++|+.++-.++...+-.+..
T Consensus 65 ~~~~~~i~LDe~Gk~~sS~~fA~~l~~~~~ 94 (157)
T PRK00103 65 PKGARVIALDERGKQLSSEEFAQELERWRD 94 (157)
T ss_pred CCCCEEEEEcCCCCcCCHHHHHHHHHHHHh
Confidence 346788889999999999999888887633
No 62
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=36.48 E-value=57 Score=29.61 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=28.2
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCcEEEEecC
Q 027073 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDT 35 (228)
Q Consensus 2 Fp~~~PnPe~~~~l~~l~~~v~~~~adlgia~D~ 35 (228)
|-+..|||. -+.++...+.+++.++|+.|++=|
T Consensus 65 f~~v~~np~-~~~v~~~~~~~~~~~~D~IiaiGG 97 (383)
T PRK09860 65 YDGTQPNPT-TENVAAGLKLLKENNCDSVISLGG 97 (383)
T ss_pred eCCCCCCcC-HHHHHHHHHHHHHcCCCEEEEeCC
Confidence 566789996 788899999999999999998854
No 63
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=35.60 E-value=1.7e+02 Score=24.47 Aligned_cols=52 Identities=17% Similarity=0.307 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHhcCCcEEEEecC-----CCCeEEEEeCCCc--cccchhHHHHHHHHH
Q 027073 12 KTAMALTRAAVLENNADLGVVFDT-----DVDRSGVVDNKGN--PINGDKLIALMSAIV 63 (228)
Q Consensus 12 ~~~l~~l~~~v~~~~adlgia~D~-----DgDR~~vvd~~G~--~l~~d~~~~Ll~~~l 63 (228)
.+.++...+...+.++|+.+|.|- |..+..+++.+|. .-+-.++...+++.+
T Consensus 165 ~~l~~~a~~kl~~~~~d~ivaN~~~~~~~~~~~~~li~~~~~~~~~~k~~ia~~i~~~~ 223 (227)
T TIGR02114 165 EELVKVARASLIKNQADFILANDLTDISADQHKALLIEKNQVQTAQTKEEIAELLYEKV 223 (227)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcchhhcCCCCceEEEEeCCCeeecCCHHHHHHHHHHHH
Confidence 345677778888899999999876 3455777777762 122244444444443
No 64
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=35.43 E-value=25 Score=31.93 Aligned_cols=97 Identities=13% Similarity=0.116 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHhcCCcEEEEecCCCCeE------------EEEe--CCC-----ccc----cchhHHHHHHHHHHhhCC-
Q 027073 13 TAMALTRAAVLENNADLGVVFDTDVDRS------------GVVD--NKG-----NPI----NGDKLIALMSAIVLKEHP- 68 (228)
Q Consensus 13 ~~l~~l~~~v~~~~adlgia~D~DgDR~------------~vvd--~~G-----~~l----~~d~~~~Ll~~~ll~~~~- 68 (228)
..-+...+++.+.++...|..=..+.|= .+.- =+| +++ .|||-..=+++|++++..
T Consensus 55 ~ya~~A~~Li~~d~V~~ifGc~TSasRKaVlPvvE~~~~LL~Yp~~YEG~E~S~nviYtGa~PNQ~~~pl~~~~~~~~G~ 134 (363)
T PF13433_consen 55 TYAEKAEKLIREDGVRAIFGCYTSASRKAVLPVVERHNALLFYPTQYEGFECSPNVIYTGAAPNQQLLPLIDYLLENFGA 134 (363)
T ss_dssp HHHHHHHHHHHHS---EEEE--SHHHHHHHHHHHHHCT-EEEE-S--------TTEEE-S--GGGTHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHhCCccEEEecchhhhHHHHHHHHHhcCceEEeccccccccCCCceEEcCCCchhhHHHHHHHHHhccCC
Confidence 3455666777788888877776666552 2220 112 111 468888888999998854
Q ss_pred C------CeEEEcccCCHHHHHHHHHcCCeEE---EEecchHHHHHHHhh
Q 027073 69 G------TTIVTDARTSMALTKFITDRGGNHC---LYRVGYRNVIDKGVH 109 (228)
Q Consensus 69 ~------~~vv~~v~ss~~l~~ia~~~g~~v~---~t~vG~k~i~~~~~~ 109 (228)
. +.-|.|-.+++++.+++++.|++++ +.+.|...+.+.+.+
T Consensus 135 ~r~~lvGSdYv~pre~Nri~r~~l~~~GgevvgE~Y~plg~td~~~ii~~ 184 (363)
T PF13433_consen 135 KRFYLVGSDYVYPRESNRIIRDLLEARGGEVVGERYLPLGATDFDPIIAE 184 (363)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEEE-S-HHHHHHHHHH
T ss_pred ceEEEecCCccchHHHHHHHHHHHHHcCCEEEEEEEecCCchhHHHHHHH
Confidence 2 2234566788888999999999986 457776655444443
No 65
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=34.85 E-value=59 Score=29.68 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=27.6
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCcEEEEecC
Q 027073 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDT 35 (228)
Q Consensus 2 Fp~~~PnPe~~~~l~~l~~~v~~~~adlgia~D~ 35 (228)
|.+..|||. .+.+....+.+++.++|+.|++=|
T Consensus 83 ~~~v~~~P~-~~~v~~~~~~~r~~~~D~IiavGG 115 (395)
T PRK15454 83 WPCPVGEPC-ITDVCAAVAQLRESGCDGVIAFGG 115 (395)
T ss_pred ECCCCCCcC-HHHHHHHHHHHHhcCcCEEEEeCC
Confidence 556789996 677889999999999999998843
No 66
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=34.74 E-value=2.8e+02 Score=24.92 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHhhCCCCeEEEcccCCHHHHHHHHHcCCeEEEEecch
Q 027073 53 DKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDRGGNHCLYRVGY 100 (228)
Q Consensus 53 d~~~~Ll~~~ll~~~~~~~vv~~v~ss~~l~~ia~~~g~~v~~t~vG~ 100 (228)
|+++.++.+.++. +|..|+.+..|=..-...|+..|++++.++...
T Consensus 85 de~i~~l~~~~~~--~gd~vl~~~Ptf~~Y~~~a~~~g~~~~~v~~~~ 130 (356)
T COG0079 85 DELIELLVRAFVE--PGDTVLIPEPTFSMYEIAAQLAGAEVVKVPLKE 130 (356)
T ss_pred HHHHHHHHHHhhc--CCCEEEEcCCChHHHHHHHHhcCCeEEEecccc
Confidence 5677777776655 456788888888788889999999999887754
No 67
>TIGR01122 ilvE_I branched-chain amino acid aminotransferase, group I. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family more strongly similar to the DAAT family.
Probab=34.70 E-value=2.5e+02 Score=24.26 Aligned_cols=68 Identities=9% Similarity=0.106 Sum_probs=41.7
Q ss_pred HHHHhcCCcEEEEecCCCC-------eEEEEeCCCccccchhHHHHHHHHHHhhCCCCeEEEcccCCHHHHHHHHHcCCe
Q 027073 20 AAVLENNADLGVVFDTDVD-------RSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDRGGN 92 (228)
Q Consensus 20 ~~v~~~~adlgia~D~DgD-------R~~vvd~~G~~l~~d~~~~Ll~~~ll~~~~~~~vv~~v~ss~~l~~ia~~~g~~ 92 (228)
+.+++.++|=++.+|+||. -++++. +|.+++|.. ...++.-++-. .+-++|++.|.+
T Consensus 164 ~~a~~~g~de~l~ld~~g~v~E~s~sNlf~v~-~~~l~TP~~--------------~~~~L~GItR~-~il~la~~~g~~ 227 (298)
T TIGR01122 164 SEARRHGYDEAILLDVEGYVAEGSGENIFIVK-DGVLFTPPV--------------TSSILPGITRD-TVITLAKELGIE 227 (298)
T ss_pred HHHHHcCCCEEEEECCCCCEEECCceEEEEEE-CCEEECCCC--------------CCCcCcchHHH-HHHHHHHHcCCc
Confidence 3455778999999998884 233332 335555431 11233333333 344678899999
Q ss_pred EEEEecchHHH
Q 027073 93 HCLYRVGYRNV 103 (228)
Q Consensus 93 v~~t~vG~k~i 103 (228)
|.+.++....+
T Consensus 228 v~e~~i~~~eL 238 (298)
T TIGR01122 228 VVEQPISREEL 238 (298)
T ss_pred EEEEeCCHHHH
Confidence 99999887755
No 68
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=33.93 E-value=88 Score=24.52 Aligned_cols=62 Identities=13% Similarity=0.078 Sum_probs=34.1
Q ss_pred CCCCC-hhHHHHHHHHHHhcCCcEEEEecCCCCeEEEEeCCCccccchhHHHHHHHHHHhhCCCCeEEEcccCCHHHHHH
Q 027073 7 PNPED-KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKF 85 (228)
Q Consensus 7 PnPe~-~~~l~~l~~~v~~~~adlgia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~ll~~~~~~~vv~~v~ss~~l~~i 85 (228)
.+|.+ |..-..+.+.|.+..+|.||.+++-| . +.-++.- +.|+ |..-+.++....+.
T Consensus 35 ~~~~dYpd~a~~va~~V~~g~~~~GIliCGtG----------i-------G~siaAN---K~~G--Iraa~~~d~~~A~~ 92 (144)
T TIGR00689 35 DERVDYPDYAKLVADKVVAGEVSLGILICGTG----------I-------GMSIAAN---KFKG--IRAALCVDEYTAAL 92 (144)
T ss_pred CCCCChHHHHHHHHHHHHcCCCceEEEEcCCc----------H-------HHHHHHh---cCCC--eEEEEECCHHHHHH
Confidence 34433 55556667777777777777766543 1 2222211 2233 66666666666666
Q ss_pred HHHcC
Q 027073 86 ITDRG 90 (228)
Q Consensus 86 a~~~g 90 (228)
++.++
T Consensus 93 ar~hN 97 (144)
T TIGR00689 93 ARQHN 97 (144)
T ss_pred HHHhc
Confidence 66654
No 69
>PRK07849 4-amino-4-deoxychorismate lyase; Provisional
Probab=33.82 E-value=2.4e+02 Score=24.43 Aligned_cols=70 Identities=10% Similarity=0.015 Sum_probs=42.9
Q ss_pred HHHHHhcCCcEEEEecCCCC-------eEEEEeCCCccccchhHHHHHHHHHHhhCCCCeEEEcccCCHHHHHHHHHcCC
Q 027073 19 RAAVLENNADLGVVFDTDVD-------RSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDRGG 91 (228)
Q Consensus 19 ~~~v~~~~adlgia~D~DgD-------R~~vvd~~G~~l~~d~~~~Ll~~~ll~~~~~~~vv~~v~ss~~l~~ia~~~g~ 91 (228)
.+.+++.++|-++.+|.||. -++++. +|++++|.. ...++.-++-.. +-+++++.|.
T Consensus 170 ~~~A~~~g~dd~L~ld~~G~v~E~s~~Nif~~~-~g~l~TP~~--------------~~giL~GItR~~-vie~~~~~g~ 233 (292)
T PRK07849 170 LRYAARRGADDVIFTSTDGYVLEGPTSTVVIAT-DDRLLTPPP--------------WYGILPGTTQAA-LFEVAREKGW 233 (292)
T ss_pred HHHHHHcCCCEEEEEcCCCcEEECCceEEEEEE-CCEEECCCC--------------cCCCCccHHHHH-HHHHHHHcCC
Confidence 45567789999999999974 233332 455555531 112333333333 3356778899
Q ss_pred eEEEEecchHHHH
Q 027073 92 NHCLYRVGYRNVI 104 (228)
Q Consensus 92 ~v~~t~vG~k~i~ 104 (228)
.|.+..+..+.+.
T Consensus 234 ~v~er~i~~~eL~ 246 (292)
T PRK07849 234 DCEYRALRPADLF 246 (292)
T ss_pred ceEEEECCHHHHh
Confidence 9999998877653
No 70
>PRK15138 aldehyde reductase; Provisional
Probab=32.92 E-value=67 Score=29.22 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=28.0
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCcEEEEecC
Q 027073 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDT 35 (228)
Q Consensus 2 Fp~~~PnPe~~~~l~~l~~~v~~~~adlgia~D~ 35 (228)
|.+..|||. .+.++.+.+.+++.++|+.|++=|
T Consensus 62 f~~v~~~p~-~~~v~~~~~~~~~~~~D~IIaiGG 94 (387)
T PRK15138 62 FGGIEPNPT-YETLMKAVKLVREEKITFLLAVGG 94 (387)
T ss_pred ECCccCCCC-HHHHHHHHHHHHHcCCCEEEEeCC
Confidence 566789996 788999999999999999998754
No 71
>PRK13356 aminotransferase; Provisional
Probab=32.16 E-value=2.3e+02 Score=24.26 Aligned_cols=72 Identities=11% Similarity=0.099 Sum_probs=42.5
Q ss_pred HHHHHHHhcCCcEEEEecCCCC-------eEEEEeCCCccccchhHHHHHHHHHHhhCCCCeEEEcccCCHHHHHHHHHc
Q 027073 17 LTRAAVLENNADLGVVFDTDVD-------RSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDR 89 (228)
Q Consensus 17 ~l~~~v~~~~adlgia~D~DgD-------R~~vvd~~G~~l~~d~~~~Ll~~~ll~~~~~~~vv~~v~ss~~l~~ia~~~ 89 (228)
...+.+++.++|-++.+|.||. -++++ .+|.+++|.- ...++--++- ..+-++|++.
T Consensus 162 la~~ea~~~g~deal~ld~~G~v~E~~~sNlf~v-~~~~l~TP~~--------------~~~~L~GItR-~~vi~~a~~~ 225 (286)
T PRK13356 162 RALREARSRGFDNALVLDMLGNVAETATSNVFMV-KDGVVFTPVP--------------NGTFLNGITR-QRVIALLRED 225 (286)
T ss_pred HHHHHHHHcCCCEEEEECCCCCEEEcCceEEEEE-ECCEEEcCCC--------------CCCcccCHHH-HHHHHHHHHc
Confidence 3456667789999999998883 11222 1234444420 1112222222 2334678899
Q ss_pred CCeEEEEecchHHHH
Q 027073 90 GGNHCLYRVGYRNVI 104 (228)
Q Consensus 90 g~~v~~t~vG~k~i~ 104 (228)
|..|.+.++....+.
T Consensus 226 gi~v~e~~i~~~eL~ 240 (286)
T PRK13356 226 GVTVVETTLTYEDFL 240 (286)
T ss_pred CCeEEEEecCHHHHH
Confidence 999999998776553
No 72
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=31.71 E-value=75 Score=28.63 Aligned_cols=33 Identities=18% Similarity=0.228 Sum_probs=27.9
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCcEEEEecC
Q 027073 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDT 35 (228)
Q Consensus 2 Fp~~~PnPe~~~~l~~l~~~v~~~~adlgia~D~ 35 (228)
|.+..|||. .+.+..+.+.+++.++|+.|++=|
T Consensus 58 ~~~v~~~p~-~~~v~~~~~~~~~~~~D~IIavGG 90 (375)
T cd08179 58 FEGVEPDPS-VETVLKGAEAMREFEPDWIIALGG 90 (375)
T ss_pred eCCCCCCcC-HHHHHHHHHHHHhcCCCEEEEeCC
Confidence 667789996 788999999999999999888743
No 73
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=31.69 E-value=82 Score=16.99 Aligned_cols=18 Identities=33% Similarity=0.412 Sum_probs=12.8
Q ss_pred EEEEecCCCCeEEEEeCCC
Q 027073 29 LGVVFDTDVDRSGVVDNKG 47 (228)
Q Consensus 29 lgia~D~DgDR~~vvd~~G 47 (228)
-|++.|++ +++.+.|.+.
T Consensus 5 ~gvav~~~-g~i~VaD~~n 22 (28)
T PF01436_consen 5 HGVAVDSD-GNIYVADSGN 22 (28)
T ss_dssp EEEEEETT-SEEEEEECCC
T ss_pred cEEEEeCC-CCEEEEECCC
Confidence 48899954 5588888554
No 74
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=31.43 E-value=77 Score=28.67 Aligned_cols=33 Identities=15% Similarity=0.141 Sum_probs=27.9
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCcEEEEecC
Q 027073 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDT 35 (228)
Q Consensus 2 Fp~~~PnPe~~~~l~~l~~~v~~~~adlgia~D~ 35 (228)
|.+..|||. .+.+..+.+.+++.++|+.|++=|
T Consensus 61 f~~v~~~p~-~~~v~~~~~~~~~~~~D~IIaiGG 93 (383)
T cd08186 61 YNKVTPNPT-VDQVDEAAKLGREFGAQAVIAIGG 93 (383)
T ss_pred eCCCCCCCC-HHHHHHHHHHHHHcCCCEEEEeCC
Confidence 667789996 788999999999999999888743
No 75
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=30.91 E-value=18 Score=20.89 Aligned_cols=22 Identities=9% Similarity=-0.080 Sum_probs=16.6
Q ss_pred HhcCCcEEEEecCCCCeEEEEe
Q 027073 23 LENNADLGVVFDTDVDRSGVVD 44 (228)
Q Consensus 23 ~~~~adlgia~D~DgDR~~vvd 44 (228)
...+.+...++.|||.++.+.-
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s 27 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTS 27 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEE
T ss_pred cCCccccCEEEecCCCEEEEEe
Confidence 3445688999999999999884
No 76
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=29.46 E-value=87 Score=28.03 Aligned_cols=33 Identities=18% Similarity=0.147 Sum_probs=27.7
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCcEEEEecC
Q 027073 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDT 35 (228)
Q Consensus 2 Fp~~~PnPe~~~~l~~l~~~v~~~~adlgia~D~ 35 (228)
|.+..|||. -+.+..+.+.+++.++|+.|++=|
T Consensus 60 ~~~v~~~p~-~~~v~~~~~~~~~~~~D~IIavGG 92 (357)
T cd08181 60 FDEVEENPS-LETIMEAVEIAKKFNADFVIGIGG 92 (357)
T ss_pred eCCCCCCcC-HHHHHHHHHHHHhcCCCEEEEeCC
Confidence 666789996 788899999999999999888843
No 77
>PF14272 Gly_rich_SFCGS: Glycine-rich SFCGS
Probab=29.32 E-value=47 Score=24.36 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=18.7
Q ss_pred HHHHHHHhcCCcEEEEecCCCC
Q 027073 17 LTRAAVLENNADLGVVFDTDVD 38 (228)
Q Consensus 17 ~l~~~v~~~~adlgia~D~DgD 38 (228)
.+-+.+.+++|||||.|=+.|-
T Consensus 37 klGdvM~~e~Ad~GiSFCGSGG 58 (115)
T PF14272_consen 37 KLGDVMKKENADFGISFCGSGG 58 (115)
T ss_pred hHHHHHHhhCCCcceEEecCCC
Confidence 4678889999999999987765
No 78
>PRK06606 branched-chain amino acid aminotransferase; Validated
Probab=29.15 E-value=2.8e+02 Score=24.04 Aligned_cols=69 Identities=13% Similarity=0.109 Sum_probs=41.1
Q ss_pred HHHHHhcCCcEEEEecCCCC-------eEEEEeCCCccccchhHHHHHHHHHHhhCCCCeEEEcccCCHHHHHHHHHcCC
Q 027073 19 RAAVLENNADLGVVFDTDVD-------RSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDRGG 91 (228)
Q Consensus 19 ~~~v~~~~adlgia~D~DgD-------R~~vvd~~G~~l~~d~~~~Ll~~~ll~~~~~~~vv~~v~ss~~l~~ia~~~g~ 91 (228)
.+.+++.++|=+|.+|+||. -++++. +|.+++|.. ...++.-++ -..+-+++++.|.
T Consensus 171 ~~ea~~~G~de~l~l~~~g~v~E~~~sNlf~v~-~~~l~TP~~--------------~~giL~Git-R~~vl~~~~~~g~ 234 (306)
T PRK06606 171 KTEARRNGYDEALLLDVEGYVSEGSGENIFIVR-DGVLYTPPL--------------TSSILEGIT-RDTVITLAKDLGI 234 (306)
T ss_pred HHHHHHcCCCEEEEECCCCCEEEcCceEEEEEE-CCEEECCCC--------------cCCcCCCHH-HHHHHHHHHHcCC
Confidence 45566789999999999884 122222 334444420 011222222 2233467888999
Q ss_pred eEEEEecchHHH
Q 027073 92 NHCLYRVGYRNV 103 (228)
Q Consensus 92 ~v~~t~vG~k~i 103 (228)
+|.+.++-...+
T Consensus 235 ~v~e~~i~~~eL 246 (306)
T PRK06606 235 EVIERRITRDEL 246 (306)
T ss_pred cEEEEeCCHHHH
Confidence 999998877655
No 79
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=29.15 E-value=84 Score=28.32 Aligned_cols=33 Identities=27% Similarity=0.304 Sum_probs=27.7
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCcEEEEecC
Q 027073 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDT 35 (228)
Q Consensus 2 Fp~~~PnPe~~~~l~~l~~~v~~~~adlgia~D~ 35 (228)
|.+..|||. -+.+..+.+.+++.++|+.|++=|
T Consensus 60 ~~~v~~~p~-~~~v~~~~~~~~~~~~D~IiavGG 92 (380)
T cd08185 60 FDKVEPNPT-TTTVMEGAALAREEGCDFVVGLGG 92 (380)
T ss_pred eCCccCCCC-HHHHHHHHHHHHHcCCCEEEEeCC
Confidence 566789996 688888999999999999998754
No 80
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=29.14 E-value=1.2e+02 Score=23.83 Aligned_cols=26 Identities=15% Similarity=0.038 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHhcCCcEEEEecCCC
Q 027073 12 KTAMALTRAAVLENNADLGVVFDTDV 37 (228)
Q Consensus 12 ~~~l~~l~~~v~~~~adlgia~D~Dg 37 (228)
|..-..+.+.|.+..+|.||.+++-|
T Consensus 42 pd~a~~va~~V~~~~~~~GIliCGtG 67 (143)
T TIGR01120 42 PHYAKQVALAVAGGEVDGGILICGTG 67 (143)
T ss_pred HHHHHHHHHHHHCCCCceEEEEcCCc
Confidence 44455566666666677777666543
No 81
>PLN02883 Branched-chain amino acid aminotransferase
Probab=29.13 E-value=3e+02 Score=25.19 Aligned_cols=71 Identities=14% Similarity=0.049 Sum_probs=44.2
Q ss_pred HHHHHhcCCcEEEEecCCCC-eE--------EEEeCCCccccchhHHHHHHHHHHhhCCCCeEEEcccCCHHHHHHHHHc
Q 027073 19 RAAVLENNADLGVVFDTDVD-RS--------GVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDR 89 (228)
Q Consensus 19 ~~~v~~~~adlgia~D~DgD-R~--------~vvd~~G~~l~~d~~~~Ll~~~ll~~~~~~~vv~~v~ss~~l~~ia~~~ 89 (228)
.+.+++.++|=++.+|++.. .+ +++. +|.+++|.- ...++--+ +-+.+-++|++.
T Consensus 243 ~~eA~~~G~de~L~Ld~~~~~~V~E~~~sNlF~v~-~~~l~TP~l--------------~~~iLpGI-TR~svl~la~~~ 306 (384)
T PLN02883 243 MRRAKSRGFSDVLYLDADTGKNIEEVSAANIFLVK-GNIIVTPAT--------------SGTILGGI-TRKSIIEIALDL 306 (384)
T ss_pred HHHHHHCCCCEEEEEeCCCCCEEEEcCcEEEEEEE-CCEEEeCCC--------------cCCcCcCH-HHHHHHHHHHHC
Confidence 35667889999999998743 32 2221 234444420 11233333 344455789999
Q ss_pred CCeEEEEecchHHHHH
Q 027073 90 GGNHCLYRVGYRNVID 105 (228)
Q Consensus 90 g~~v~~t~vG~k~i~~ 105 (228)
|.+|.+.++....+.+
T Consensus 307 G~~V~Er~i~~~eL~~ 322 (384)
T PLN02883 307 GYKVEERRVPVEELKE 322 (384)
T ss_pred CCeEEEEECCHHHHHh
Confidence 9999999998776643
No 82
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=28.65 E-value=70 Score=24.90 Aligned_cols=57 Identities=18% Similarity=0.110 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHhcCCcEEEEecCCCCeEEEEeCCCccccchhHHHHHHHHHHhhCCCCeEEEcccCCHHHHHHHHHcC
Q 027073 12 KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDRG 90 (228)
Q Consensus 12 ~~~l~~l~~~v~~~~adlgia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~ll~~~~~~~vv~~v~ss~~l~~ia~~~g 90 (228)
|+.-..+.+.|.+.++|.||.+++-| . +.-++.- +.|| |..-+.++..-.+.++.++
T Consensus 42 ~~~a~~va~~V~~~~~d~GIliCgtG----------i-------G~~iaAN---K~~G--IrAa~~~d~~~A~~ar~hN 98 (140)
T PF02502_consen 42 PDFAEKVAEAVASGEADRGILICGTG----------I-------GMSIAAN---KVPG--IRAALCSDPYSAKMAREHN 98 (140)
T ss_dssp HHHHHHHHHHHHTTSSSEEEEEESSS----------H-------HHHHHHH---TSTT----EEE-SSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcccCCeEEEEcCCC----------h-------hhhhHhh---cCCC--EEEEeeCCHHHHHHHHHhc
Confidence 55566677777777777777766543 1 2222221 3344 5555666666666666654
No 83
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=28.37 E-value=94 Score=28.41 Aligned_cols=48 Identities=23% Similarity=0.323 Sum_probs=37.0
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCcEEEEecCCCCeEEEEeCCCccccchhHHHHHHH
Q 027073 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSA 61 (228)
Q Consensus 2 Fp~~~PnPe~~~~l~~l~~~v~~~~adlgia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~ 61 (228)
|....|||. -++.....+.+++.++|..|++=| |-.++--+..++++.
T Consensus 63 f~~v~p~P~-~~~v~~~~~~~~~~~~D~iIalGG-----------GS~~D~AK~i~~~~~ 110 (377)
T COG1454 63 FDEVEPEPT-IETVEAGAEVAREFGPDTIIALGG-----------GSVIDAAKAIALLAE 110 (377)
T ss_pred ecCCCCCCC-HHHHHHHHHHHHhcCCCEEEEeCC-----------ccHHHHHHHHHHHhh
Confidence 667889996 678888899999999999999854 445555566666655
No 84
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=27.78 E-value=1.3e+02 Score=23.78 Aligned_cols=26 Identities=19% Similarity=0.157 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHhcCCcEEEEecCCC
Q 027073 12 KTAMALTRAAVLENNADLGVVFDTDV 37 (228)
Q Consensus 12 ~~~l~~l~~~v~~~~adlgia~D~Dg 37 (228)
|..-..+.+.|.+..+|.||.+.+-|
T Consensus 44 pd~a~~va~~V~~g~~~~GIliCGtG 69 (148)
T PRK05571 44 PDYAKKVAEAVVAGEADRGILICGTG 69 (148)
T ss_pred HHHHHHHHHHHHcCCCCEEEEEcCCc
Confidence 55666677777777777777776544
No 85
>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate. The enzyme requires pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze the reaction. It has been found that mammals have two foms of the enzyme - mitochondrial and cytosolic forms while bacteria contain only one form of the enzyme. The mitochondrial form plays a significant role in skeletal muscle glutamine and alanine synthesis and in interorgan nitrogen metabolism.Members of this subgroup are widely distributed in all three forms of life.
Probab=27.76 E-value=3.3e+02 Score=23.28 Aligned_cols=70 Identities=13% Similarity=0.058 Sum_probs=42.1
Q ss_pred HHHHHhcCCcEEEEecCC-CC-------eEEEEeCCCccccchhHHHHHHHHHHhhCCCCeEEEcccCCHHHHHHHHHcC
Q 027073 19 RAAVLENNADLGVVFDTD-VD-------RSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDRG 90 (228)
Q Consensus 19 ~~~v~~~~adlgia~D~D-gD-------R~~vvd~~G~~l~~d~~~~Ll~~~ll~~~~~~~vv~~v~ss~~l~~ia~~~g 90 (228)
.+.+++.++|=++.+|.| |. -+.++. +|.+++|.- ...++.-++ -..+-++|++.|
T Consensus 153 ~~eA~~~g~de~l~ld~~~g~v~E~~~sNlf~v~-~~~l~TP~~--------------~~~~L~Git-r~~v~~~~~~~G 216 (279)
T cd01557 153 QKEAAEKGYDQALWLDGAHGYVAEVGTMNIFFVK-DGELITPPL--------------DGSILPGIT-RDSILELARDLG 216 (279)
T ss_pred HHHHHHCCCCEEEEEcCCCCEEEEeCcEEEEEEE-CCEEEcCCC--------------cCCCCCchH-HHHHHHHHHHcC
Confidence 455667789999999988 53 122222 345555531 111332222 233446788999
Q ss_pred CeEEEEecchHHHH
Q 027073 91 GNHCLYRVGYRNVI 104 (228)
Q Consensus 91 ~~v~~t~vG~k~i~ 104 (228)
.+|.+.++....+.
T Consensus 217 i~v~e~~i~~~~l~ 230 (279)
T cd01557 217 IKVEERPITRDELY 230 (279)
T ss_pred CeEEEEeCCHHHHh
Confidence 99999998877553
No 86
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=27.70 E-value=4.1e+02 Score=23.11 Aligned_cols=76 Identities=24% Similarity=0.304 Sum_probs=50.5
Q ss_pred HHHHHHh-cCCcEEEEecCCCCeE--------EEEeCCCccccchhHHHHHHHHHHhhCCCCeEEEcccCCHHHH---HH
Q 027073 18 TRAAVLE-NNADLGVVFDTDVDRS--------GVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALT---KF 85 (228)
Q Consensus 18 l~~~v~~-~~adlgia~D~DgDR~--------~vvd~~G~~l~~d~~~~Ll~~~ll~~~~~~~vv~~v~ss~~l~---~i 85 (228)
+.+.+.+ .+..|+-++|..++-. .-+..-|..+..+ +........|+++++++.... ++
T Consensus 18 ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~---------~~~~~~~~DV~IDFT~P~~~~~~l~~ 88 (266)
T COG0289 18 LIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDD---------LLLVKADADVLIDFTTPEATLENLEF 88 (266)
T ss_pred HHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecc---------hhhcccCCCEEEECCCchhhHHHHHH
Confidence 3444443 4588999998776532 2223445555555 222224556999999998876 47
Q ss_pred HHHcCCeEEEEecchHH
Q 027073 86 ITDRGGNHCLYRVGYRN 102 (228)
Q Consensus 86 a~~~g~~v~~t~vG~k~ 102 (228)
|.++|..++--.|||+.
T Consensus 89 ~~~~~~~lVIGTTGf~~ 105 (266)
T COG0289 89 ALEHGKPLVIGTTGFTE 105 (266)
T ss_pred HHHcCCCeEEECCCCCH
Confidence 78899999999999974
No 87
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=27.55 E-value=99 Score=27.87 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=27.8
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCcEEEEecC
Q 027073 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDT 35 (228)
Q Consensus 2 Fp~~~PnPe~~~~l~~l~~~v~~~~adlgia~D~ 35 (228)
|.+..|||. .+.++.+.+.+++.++|+.|+.=|
T Consensus 62 f~~v~~~p~-~~~v~~~~~~~~~~~~D~IIavGG 94 (377)
T cd08176 62 YDGVKPNPT-ITNVKDGLAVFKKEGCDFIISIGG 94 (377)
T ss_pred eCCCCCCCC-HHHHHHHHHHHHhcCCCEEEEeCC
Confidence 566778996 788999999999999999998854
No 88
>PLN03117 Branched-chain-amino-acid aminotransferase; Provisional
Probab=27.28 E-value=2.5e+02 Score=25.26 Aligned_cols=69 Identities=9% Similarity=0.006 Sum_probs=40.9
Q ss_pred HHHHHhcCCcEEEEecCCCC-e--------EEEEeCCCccccchhHHHHHHHHHHhhCCCCeEEEcccCCHHHHHHHHHc
Q 027073 19 RAAVLENNADLGVVFDTDVD-R--------SGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDR 89 (228)
Q Consensus 19 ~~~v~~~~adlgia~D~DgD-R--------~~vvd~~G~~l~~d~~~~Ll~~~ll~~~~~~~vv~~v~ss~~l~~ia~~~ 89 (228)
.+.+++.++|=+|.+|.+.+ . ++++. +|.+++|.- ...++--++ -+.+-++|++.
T Consensus 210 ~~eA~~~G~deaL~ld~~~~g~v~E~~~sNlF~v~-~~~l~TP~l--------------~~~iL~GIt-R~~vl~la~~~ 273 (355)
T PLN03117 210 LIEAKSSGFSDVLFLDAATGKNIEELSACNIFILK-GNIVSTPPT--------------SGTILPGVT-RKSISELARDI 273 (355)
T ss_pred HHHHHHCCCCEEEEEeCCCCCEEEEcCcEEEEEEE-CCEEEeCCC--------------cCCCCCCHH-HHHHHHHHHHC
Confidence 45556789999999998633 3 22222 334444431 111232222 23444688999
Q ss_pred CCeEEEEecchHHH
Q 027073 90 GGNHCLYRVGYRNV 103 (228)
Q Consensus 90 g~~v~~t~vG~k~i 103 (228)
|.+|.+.+.....+
T Consensus 274 Gi~v~Er~i~~~eL 287 (355)
T PLN03117 274 GYQVEERDVSVDEL 287 (355)
T ss_pred CCEEEEEEccHHHH
Confidence 99999998876654
No 89
>TIGR03577 EF_0830 conserved hypothetical protein EF_0830/AHA_3911. Members of this family of small (about 120 amino acid), relatively rare proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=27.28 E-value=51 Score=24.17 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=18.6
Q ss_pred HHHHHHHhcCCcEEEEecCCCC
Q 027073 17 LTRAAVLENNADLGVVFDTDVD 38 (228)
Q Consensus 17 ~l~~~v~~~~adlgia~D~DgD 38 (228)
.|-+.+++.+|||||.|=+.|-
T Consensus 37 klGdVM~~e~Ad~GiSFCGSGG 58 (115)
T TIGR03577 37 KLGDVMKQENADLGISFCGSGG 58 (115)
T ss_pred hHHHHHhhhcCccceEEecCCC
Confidence 4678889999999999987765
No 90
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=26.59 E-value=2.9e+02 Score=25.31 Aligned_cols=35 Identities=23% Similarity=0.287 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhcCCcEEEEecC--------CCCeEEEEeCCCc
Q 027073 14 AMALTRAAVLENNADLGVVFDT--------DVDRSGVVDNKGN 48 (228)
Q Consensus 14 ~l~~l~~~v~~~~adlgia~D~--------DgDR~~vvd~~G~ 48 (228)
.++...+...+.++|+.++.|- |-.++.+++.+|.
T Consensus 331 ~~~~A~~kl~~k~~D~ivaN~i~~~~~fg~~~n~~~ii~~~~~ 373 (399)
T PRK05579 331 VLEYARAKLKRKGLDLIVANDVSAGGGFGSDDNEVTLIWSDGG 373 (399)
T ss_pred HHHHHHHHHHHcCCeEEEEecCCcCCCcCCCceEEEEEECCCc
Confidence 4677788888999999999996 3456888887774
No 91
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=26.59 E-value=1e+02 Score=28.08 Aligned_cols=33 Identities=12% Similarity=0.156 Sum_probs=27.8
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCcEEEEecC
Q 027073 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDT 35 (228)
Q Consensus 2 Fp~~~PnPe~~~~l~~l~~~v~~~~adlgia~D~ 35 (228)
|++..|||. -+..+.+.+.+++.++|+.|++=|
T Consensus 55 f~~v~~~p~-~~~v~~~~~~~~~~~~D~IIaiGG 87 (398)
T cd08178 55 FSDVEPDPS-LETVRKGLELMNSFKPDTIIALGG 87 (398)
T ss_pred ecCCCCCcC-HHHHHHHHHHHHhcCCCEEEEeCC
Confidence 667789996 678888999999999999988754
No 92
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.
Probab=26.33 E-value=73 Score=22.57 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=18.1
Q ss_pred EecCCCCeEEEEeCCCccccchhHHHHHHHHH
Q 027073 32 VFDTDVDRSGVVDNKGNPINGDKLIALMSAIV 63 (228)
Q Consensus 32 a~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~l 63 (228)
--|.||||+.+- +.+++-|++..|+
T Consensus 46 YEDE~gDRITVR-------SDeEm~AMlsyy~ 70 (91)
T cd06395 46 YEDEDGDRITVR-------SDEEMKAMLSYYC 70 (91)
T ss_pred eccccCCeeEec-------chHHHHHHHHHHH
Confidence 458999999764 4567777777664
No 93
>cd03363 TOPRIM_TopoIA_TopoI TOPRIM_TopoIA_TopoI: The topoisomerase-primase (TORPIM) domain found in members of the type IA family of DNA topoisomerases (Topo IA) similar to Escherichia coli DNA topoisomerase I. Type IA DNA topoisomerases remove (relax) negative supercoils in the DNA by: cleaving one strand of the DNA duplex, covalently linking to the 5' phosphoryl end of the DNA break and, allowing the other strand of the duplex to pass through the gap. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). For topoisomerases the conserved glutamate is believed to act as a general base in strand joining and, as a general acid in strand cleavage. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=26.13 E-value=2.5e+02 Score=21.02 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHhcCCc-EEEEecCC
Q 027073 12 KTAMALTRAAVLENNAD-LGVVFDTD 36 (228)
Q Consensus 12 ~~~l~~l~~~v~~~~ad-lgia~D~D 36 (228)
.+.++.+.++++ ++| +.+|+|+|
T Consensus 60 ~~~~~~ik~l~~--~~~eiiiAtD~d 83 (123)
T cd03363 60 KKVVKELKKLAK--KADEIYLATDPD 83 (123)
T ss_pred HHHHHHHHHHHh--cCCEEEEcCCCC
Confidence 445666666663 344 88888875
No 94
>cd01559 ADCL_like ADCL_like: 4-Amino-4-deoxychorismate lyase: is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate. Based on the information available from the crystal structure, most members of this subgroup are likely to function as dimers. The enzyme from E.Coli, the structure of which is available, is a homodimer that is folded into a small and a larger domain. The coenzyme pyridoxal 5; -phosphate resides at the interface of the two domains that is linked by a flexible loop. Members of this subgroup are found in Eukaryotes and bacteria.
Probab=25.92 E-value=3.9e+02 Score=22.24 Aligned_cols=68 Identities=12% Similarity=0.091 Sum_probs=38.6
Q ss_pred HHHHhcCCcEEEEecCCCC-------eEEEEeCCCccccchhHHHHHHHHHHhhCCCCeEEEcccCCHHHHHHHHHcCCe
Q 027073 20 AAVLENNADLGVVFDTDVD-------RSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDRGGN 92 (228)
Q Consensus 20 ~~v~~~~adlgia~D~DgD-------R~~vvd~~G~~l~~d~~~~Ll~~~ll~~~~~~~vv~~v~ss~~l~~ia~~~g~~ 92 (228)
+.+.+.++|-++.+|+||. -++++. +|++++|.. ...++--++ -..+-+++++.|.+
T Consensus 136 ~~a~~~g~de~l~l~~~g~v~E~~~~Nif~~~-~~~~~TP~~--------------~~g~L~Git-r~~~l~~~~~~g~~ 199 (249)
T cd01559 136 REARDRGADEALFLDTDGRVIEGTASNLFFVK-DGELVTPSL--------------DRGGLAGIT-RQRVIELAAAKGYA 199 (249)
T ss_pred HHHHhcCCCEEEEEcCCCCEEEecceEEEEEE-CCEEECCCc--------------ccCccccHH-HHHHHHHHHHcCce
Confidence 3455678999999998873 122221 334444421 011222222 23334677889999
Q ss_pred EEEEecchHHH
Q 027073 93 HCLYRVGYRNV 103 (228)
Q Consensus 93 v~~t~vG~k~i 103 (228)
+.+..+....+
T Consensus 200 v~e~~i~~~el 210 (249)
T cd01559 200 VDERPLRLEDL 210 (249)
T ss_pred EEEEecCHHHH
Confidence 99998876655
No 95
>PF06626 DUF1152: Protein of unknown function (DUF1152); InterPro: IPR010581 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=25.44 E-value=1.6e+02 Score=26.03 Aligned_cols=34 Identities=18% Similarity=0.066 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcCCcEEEEecCCCCeEEEEeCCC
Q 027073 14 AMALTRAAVLENNADLGVVFDTDVDRSGVVDNKG 47 (228)
Q Consensus 14 ~l~~l~~~v~~~~adlgia~D~DgDR~~vvd~~G 47 (228)
--+.+..++.+.+.|..+..|+-||=++.=||.|
T Consensus 105 l~~al~~l~~~~~iD~Ii~VDvGgDvLa~G~E~~ 138 (297)
T PF06626_consen 105 LARALRELAEKLGIDAIILVDVGGDVLARGDEPG 138 (297)
T ss_pred HHHHHHHHHHHcCCCEEEEEecCCceEeecCccc
Confidence 4556678889999999999999999988888886
No 96
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=25.12 E-value=1.4e+02 Score=24.08 Aligned_cols=57 Identities=16% Similarity=0.074 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHhcCCcEEEEecCCCCeEEEEeCCCccccchhHHHHHHHHHHhhCCCCeEEEcccCCHHHHHHHHHcC
Q 027073 12 KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDRG 90 (228)
Q Consensus 12 ~~~l~~l~~~v~~~~adlgia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~ll~~~~~~~vv~~v~ss~~l~~ia~~~g 90 (228)
|..-..+.+.|.+..+|.||.+.+-| ++.-++.- +.| .|...+.++....+.++.++
T Consensus 43 pd~a~~va~~V~~g~~~~GIliCGTG-----------------iG~siaAN---Kv~--GIRAAl~~d~~sA~~ar~hN 99 (171)
T TIGR01119 43 PIFGKKVGEAVVSGEADLGVCICGTG-----------------VGINNAVN---KVP--GVRSALVRDMTSALYAKEEL 99 (171)
T ss_pred HHHHHHHHHHHHcCCCCEEEEEcCCc-----------------HHHHHHHh---cCC--CeEEEEeCCHHHHHHHHHhc
Confidence 55566667777777777777776544 12222211 223 36666666666667776654
No 97
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=24.97 E-value=1.5e+02 Score=23.95 Aligned_cols=61 Identities=18% Similarity=0.123 Sum_probs=34.3
Q ss_pred CCCC-hhHHHHHHHHHHhcCCcEEEEecCCCCeEEEEeCCCccccchhHHHHHHHHHHhhCCCCeEEEcccCCHHHHHHH
Q 027073 8 NPED-KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFI 86 (228)
Q Consensus 8 nPe~-~~~l~~l~~~v~~~~adlgia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~ll~~~~~~~vv~~v~ss~~l~~ia 86 (228)
+|.+ |..-..+.+.|.+..+|.||.+.+-| ++.-++.- +.|| |...+.++....+.+
T Consensus 38 ~~~dYpd~a~~va~~V~~g~~d~GIliCGTG-----------------iG~siaAN---K~~G--IRAA~~~d~~~A~~a 95 (171)
T PRK12615 38 TRTHYPIFGKKVGEAVVNGQADLGVCICGTG-----------------VGINNAVN---KVPG--IRSALVRDMTTALYA 95 (171)
T ss_pred CCCChHHHHHHHHHHHHcCCCCEEEEEcCCc-----------------HHHHHHHh---cCCC--eEEEEeCCHHHHHHH
Confidence 4433 55556667777777777777776544 12222211 2233 666666666666777
Q ss_pred HHcC
Q 027073 87 TDRG 90 (228)
Q Consensus 87 ~~~g 90 (228)
+.++
T Consensus 96 r~hN 99 (171)
T PRK12615 96 KEEL 99 (171)
T ss_pred HHhc
Confidence 6654
No 98
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=24.80 E-value=1.1e+02 Score=27.41 Aligned_cols=32 Identities=19% Similarity=0.221 Sum_probs=27.0
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCcEEEEec
Q 027073 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFD 34 (228)
Q Consensus 2 Fp~~~PnPe~~~~l~~l~~~v~~~~adlgia~D 34 (228)
|.+..|||. .+.+..+.+.+++.++|+.|++=
T Consensus 60 ~~~v~~~p~-~~~v~~~~~~~~~~~~D~IIaiG 91 (376)
T cd08193 60 FDDVEADPP-EAVVEAAVEAARAAGADGVIGFG 91 (376)
T ss_pred ECCCCCCcC-HHHHHHHHHHHHhcCCCEEEEeC
Confidence 566779996 78899999999999999888874
No 99
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=24.45 E-value=1.2e+02 Score=27.39 Aligned_cols=33 Identities=27% Similarity=0.298 Sum_probs=27.5
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCcEEEEecC
Q 027073 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDT 35 (228)
Q Consensus 2 Fp~~~PnPe~~~~l~~l~~~v~~~~adlgia~D~ 35 (228)
|.+..|||. -+......+.+++.++|+.|++=|
T Consensus 63 ~~~v~~~p~-~~~v~~~~~~~~~~~~D~IiaiGG 95 (379)
T TIGR02638 63 FDEVKPNPT-ITVVKAGVAAFKASGADYLIAIGG 95 (379)
T ss_pred ECCCCCCcC-HHHHHHHHHHHHhcCCCEEEEeCC
Confidence 566789996 678888999999999999998754
No 100
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=24.34 E-value=1.6e+02 Score=23.82 Aligned_cols=61 Identities=20% Similarity=0.111 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHhcCCcEEEEecCCCCeEEEEeCCCccccchhHHHHHHHHHHhhCCCCeEEEcccCCHHHHHHHHHcC-
Q 027073 12 KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDRG- 90 (228)
Q Consensus 12 ~~~l~~l~~~v~~~~adlgia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~ll~~~~~~~vv~~v~ss~~l~~ia~~~g- 90 (228)
|..-..+.+.|.+..+|.||.+.+-| ++.-++.- +.|| |...+.++....+.++.++
T Consensus 43 pd~a~~va~~V~~g~~d~GIliCGTG-----------------iG~siaAN---Kv~G--IRAA~~~d~~sA~~aR~hNn 100 (171)
T PRK08622 43 PIFGKKVGEAVASGEADLGVCICGTG-----------------VGISNAVN---KVPG--IRSALVRDMTSALYAKEELN 100 (171)
T ss_pred HHHHHHHHHHHHcCCCcEEEEEcCCc-----------------HHHHHHHh---cCCC--eEEEEeCCHHHHHHHHHhcC
Confidence 55556667777777777777776543 12222221 2233 6666666666667776654
Q ss_pred CeEE
Q 027073 91 GNHC 94 (228)
Q Consensus 91 ~~v~ 94 (228)
++|.
T Consensus 101 aNVL 104 (171)
T PRK08622 101 ANVI 104 (171)
T ss_pred CcEE
Confidence 4433
No 101
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=24.17 E-value=1.8e+02 Score=19.97 Aligned_cols=38 Identities=21% Similarity=0.082 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHhcCCcEE--EEecCCCCe-EEEEeCCCccc
Q 027073 13 TAMALTRAAVLENNADLG--VVFDTDVDR-SGVVDNKGNPI 50 (228)
Q Consensus 13 ~~l~~l~~~v~~~~adlg--ia~D~DgDR-~~vvd~~G~~l 50 (228)
+.++.+.+.+++.++.+. ...++.|-| +.+.|++|+.+
T Consensus 65 ~dv~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~i 105 (108)
T PF12681_consen 65 EDVDALYERLKELGAEIVTEPRDDPWGQRSFYFIDPDGNRI 105 (108)
T ss_dssp SHHHHHHHHHHHTTSEEEEEEEEETTSEEEEEEE-TTS-EE
T ss_pred cCHHHHHHHHHHCCCeEeeCCEEcCCCeEEEEEECCCCCEE
Confidence 468888899999998753 555566645 56669999765
No 102
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=24.15 E-value=1.7e+02 Score=22.14 Aligned_cols=18 Identities=11% Similarity=-0.068 Sum_probs=15.2
Q ss_pred cEEEEecCCCCeEEEEeC
Q 027073 28 DLGVVFDTDVDRSGVVDN 45 (228)
Q Consensus 28 dlgia~D~DgDR~~vvd~ 45 (228)
.+.++.||||-++-++|.
T Consensus 110 ~~~fi~DPDG~~ie~~~~ 127 (127)
T cd08358 110 GVYEVKAPGGYKFYLIDK 127 (127)
T ss_pred CEEEEECCCCCEEEEecC
Confidence 488999999999988873
No 103
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=23.94 E-value=1.2e+02 Score=27.22 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=26.9
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCcEEEEecC
Q 027073 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDT 35 (228)
Q Consensus 2 Fp~~~PnPe~~~~l~~l~~~v~~~~adlgia~D~ 35 (228)
|.+..|||. -++++.+.+.+++.++|+.|++=|
T Consensus 54 ~~~~~~~p~-~~~v~~~~~~~~~~~~D~IIavGG 86 (367)
T cd08182 54 FDDVQPNPD-LEDLAAGIRLLREFGPDAVLAVGG 86 (367)
T ss_pred EcCcCCCcC-HHHHHHHHHHHHhcCcCEEEEeCC
Confidence 455778996 788999999999999998887743
No 104
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=23.54 E-value=2.5e+02 Score=25.71 Aligned_cols=35 Identities=14% Similarity=0.243 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhcCCcEEEEecCC-------CCeEEEEeCCCc
Q 027073 14 AMALTRAAVLENNADLGVVFDTD-------VDRSGVVDNKGN 48 (228)
Q Consensus 14 ~l~~l~~~v~~~~adlgia~D~D-------gDR~~vvd~~G~ 48 (228)
.++...+...+.++|+.++.|-+ -.++.+++.+|.
T Consensus 329 l~~~A~~kl~~k~~D~ivaN~i~~~~fg~~~n~~~li~~~~~ 370 (390)
T TIGR00521 329 LIKYAKEKLKKKNLDMIVANDVSQRGFGSDENEVYIFSKHGH 370 (390)
T ss_pred HHHHHHHHHHHcCCCEEEEccCCccccCCCCcEEEEEECCCe
Confidence 46777788889999999998874 567888888874
No 105
>PRK02539 hypothetical protein; Provisional
Probab=23.46 E-value=54 Score=23.36 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=17.3
Q ss_pred CeEEEEeCCCccccchhHHHH
Q 027073 38 DRSGVVDNKGNPINGDKLIAL 58 (228)
Q Consensus 38 DR~~vvd~~G~~l~~d~~~~L 58 (228)
+.+-|+|++|+-|+|+.+--+
T Consensus 49 ~~i~ivD~~G~dVTP~Klk~~ 69 (85)
T PRK02539 49 EGIKIVDEEGNDVTPEKLRQV 69 (85)
T ss_pred ccceEECCCCCCCCHHHHHHH
Confidence 557888999999999987654
No 106
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=23.13 E-value=3.9e+02 Score=25.27 Aligned_cols=53 Identities=15% Similarity=0.238 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHHhcCCcEEEEecCC---------CCeEEEEeCCCc-----c---ccchhHHHHHHHHHH
Q 027073 12 KTAMALTRAAVLENNADLGVVFDTD---------VDRSGVVDNKGN-----P---INGDKLIALMSAIVL 64 (228)
Q Consensus 12 ~~~l~~l~~~v~~~~adlgia~D~D---------gDR~~vvd~~G~-----~---l~~d~~~~Ll~~~ll 64 (228)
...++...+...+.++|+.++.|-+ -.++.+++.+|+ . .+-.++..-+.+.+.
T Consensus 398 ~~l~~~A~~KL~~K~~D~IvaN~v~~~~~gfg~d~n~v~ii~~~g~~~~~~~~~~~sK~~iA~~Il~~i~ 467 (475)
T PRK13982 398 EHLIDNARAKLARKGCDWIVANDVSPATGVMGGDRNTVHLLSRDGDAEKVESWPVMTKDEVATALVARIA 467 (475)
T ss_pred hhHHHHHHHHHHHcCCCEEEEccCCcCCCCcCCCccEEEEEECCCCccceeEcCCCCHHHHHHHHHHHHH
Confidence 3456777888889999999999763 346888888773 1 233555555555553
No 107
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=22.68 E-value=1.4e+02 Score=26.91 Aligned_cols=33 Identities=18% Similarity=0.187 Sum_probs=27.4
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCcEEEEecC
Q 027073 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDT 35 (228)
Q Consensus 2 Fp~~~PnPe~~~~l~~l~~~v~~~~adlgia~D~ 35 (228)
|.+..|||. -+.+..+.+.+++.++|+.|++=|
T Consensus 60 ~~~v~~~p~-~~~v~~~~~~~~~~~~d~IIaiGG 92 (374)
T cd08189 60 YDGVPPDPT-IENVEAGLALYRENGCDAILAVGG 92 (374)
T ss_pred eCCCCCCcC-HHHHHHHHHHHHhcCCCEEEEeCC
Confidence 556779996 788889999999999999888744
No 108
>COG4034 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.64 E-value=1.6e+02 Score=25.87 Aligned_cols=33 Identities=27% Similarity=0.142 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCeEEEEeCCC
Q 027073 15 MALTRAAVLENNADLGVVFDTDVDRSGVVDNKG 47 (228)
Q Consensus 15 l~~l~~~v~~~~adlgia~D~DgDR~~vvd~~G 47 (228)
.+.+..++.+.+.|+.+..|--||-++.-++.|
T Consensus 120 ~e~lk~lv~~~~id~IvgvD~GGDaLa~GcEe~ 152 (328)
T COG4034 120 AEGLKALVEKEGIDLIVGVDVGGDALAVGCEEG 152 (328)
T ss_pred HHHHHHHHHhhCccEEEEeccCccceecccccc
Confidence 456778889999999999999999999888887
No 109
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=22.47 E-value=1.7e+02 Score=23.22 Aligned_cols=36 Identities=25% Similarity=0.260 Sum_probs=21.3
Q ss_pred CCCCCCC-CCC-hhHHHHHHHHHHhcCCcEEEEecCCC
Q 027073 2 FPNHIPN-PED-KTAMALTRAAVLENNADLGVVFDTDV 37 (228)
Q Consensus 2 Fp~~~Pn-Pe~-~~~l~~l~~~v~~~~adlgia~D~Dg 37 (228)
|++..++ |.+ |..-..+.+.|.+.++|+||..++-|
T Consensus 32 ~G~~~~~~~~dyp~~a~~va~~v~~~~~d~GIliCGTG 69 (151)
T COG0698 32 FGTYTDEGSVDYPDYAKKVAEAVLNGEADLGILICGTG 69 (151)
T ss_pred ccccCCCCCcchHHHHHHHHHHHHcCCCCeeEEEecCC
Confidence 4444444 333 44445556666666888888877644
No 110
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=22.47 E-value=2e+02 Score=19.89 Aligned_cols=32 Identities=16% Similarity=0.125 Sum_probs=25.1
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCeEEEEeCC
Q 027073 15 MALTRAAVLENNADLGVVFDTDVDRSGVVDNK 46 (228)
Q Consensus 15 l~~l~~~v~~~~adlgia~D~DgDR~~vvd~~ 46 (228)
+..+.+.+.+.+....++.|+|+.-+++++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~ 44 (113)
T cd04607 13 ILDALRKIDKNALRIVLVVDENGRLLGTVTDG 44 (113)
T ss_pred HHHHHHHHHhcCcCEEEEECCCCCEEEEEEcH
Confidence 55666677777888889999998889888654
No 111
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=22.42 E-value=1.2e+02 Score=20.98 Aligned_cols=25 Identities=16% Similarity=0.060 Sum_probs=19.9
Q ss_pred CCCChhHHHHHHHHHHhcCCcEEEEec
Q 027073 8 NPEDKTAMALTRAAVLENNADLGVVFD 34 (228)
Q Consensus 8 nPe~~~~l~~l~~~v~~~~adlgia~D 34 (228)
|| .++++++.+.+++.+||-.+.++
T Consensus 26 d~--d~Al~eM~e~A~~lGAnAVVGvr 50 (74)
T TIGR03884 26 NV--DEIVENLREKVKAKGGMGLIAFR 50 (74)
T ss_pred CH--HHHHHHHHHHHHHcCCCEEEEEE
Confidence 66 37899999999999999655544
No 112
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=22.28 E-value=1.4e+02 Score=27.38 Aligned_cols=32 Identities=13% Similarity=0.063 Sum_probs=26.9
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCcEEEEec
Q 027073 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFD 34 (228)
Q Consensus 2 Fp~~~PnPe~~~~l~~l~~~v~~~~adlgia~D 34 (228)
|.+..|||. .+.+....+.+++.++|+.|++=
T Consensus 57 f~~v~~~p~-~~~v~~~~~~~~~~~~D~IIaiG 88 (414)
T cd08190 57 YDDVRVEPT-DESFKDAIAFAKKGQFDAFVAVG 88 (414)
T ss_pred eCCCCCCcC-HHHHHHHHHHHHhcCCCEEEEeC
Confidence 555678996 68888999999999999999884
No 113
>PRK08638 threonine dehydratase; Validated
Probab=21.81 E-value=4.2e+02 Score=23.47 Aligned_cols=40 Identities=13% Similarity=0.082 Sum_probs=30.4
Q ss_pred CCeEEEcccCCHHHHHHHHHcCCeEEEEecchHHHHHHHh
Q 027073 69 GTTIVTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGV 108 (228)
Q Consensus 69 ~~~vv~~v~ss~~l~~ia~~~g~~v~~t~vG~k~i~~~~~ 108 (228)
...|+.|-.++..-...++.+|.+|+.+...+..-.+.++
T Consensus 100 ~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~a~ 139 (333)
T PRK08638 100 DGKVVMPKGAPKSKVAATCGYGAEVVLHGDNFNDTIAKVE 139 (333)
T ss_pred CEEEEeCCCCcHHHHHHHHHcCCEEEEECcCHHHHHHHHH
Confidence 3468899888888888999999999999766554444433
No 114
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=21.69 E-value=1.5e+02 Score=26.16 Aligned_cols=33 Identities=18% Similarity=0.368 Sum_probs=26.7
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCcEEEEecC
Q 027073 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDT 35 (228)
Q Consensus 2 Fp~~~PnPe~~~~l~~l~~~v~~~~adlgia~D~ 35 (228)
|....|||. -+.++.+.+.+++.++|+.|++=|
T Consensus 55 ~~~v~~~p~-~~~v~~~~~~~~~~~~d~IiaiGG 87 (332)
T cd08180 55 FSDVVPDPP-IEVVAKGIKKFLDFKPDIVIALGG 87 (332)
T ss_pred eCCCCCCcC-HHHHHHHHHHHHhcCCCEEEEECC
Confidence 555679995 788888999999999998887743
No 115
>PF02577 DNase-RNase: Bifunctional nuclease; InterPro: IPR003729 This entry describes proteins of unknown function. The structure has been determined for one member of this group, the hypothetical protein TM0160 from Thermotoga maritima, which was found to consist of a duplication of two beta(3)-alpha(2) structural repeats, forming a single barrel-like beta-sheet [].; PDB: 1SJ5_A 1VJL_A.
Probab=21.59 E-value=1.9e+02 Score=22.05 Aligned_cols=64 Identities=17% Similarity=0.175 Sum_probs=36.2
Q ss_pred EEEEecCCCCeEEEE--eCCCc-----cccchhHHHHHHHHHHhhCCCCeEEEcccCCHHHHHHHHHcCCeEEEEec
Q 027073 29 LGVVFDTDVDRSGVV--DNKGN-----PINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDRGGNHCLYRV 98 (228)
Q Consensus 29 lgia~D~DgDR~~vv--d~~G~-----~l~~d~~~~Ll~~~ll~~~~~~~vv~~v~ss~~l~~ia~~~g~~v~~t~v 98 (228)
.||.+|+..++..++ +++++ ++.+.+..+|.... .+...-.| .+..++.++++.+|.++.++..
T Consensus 4 ~gi~~~~~~~~~vvlL~~~~~~~~lpI~i~~~ea~~i~~~~-----~~~~~~RP-~thdLl~~~l~~lg~~v~~V~I 74 (135)
T PF02577_consen 4 KGISVDEPSGQPVVLLREEDGDRVLPIWIGAFEAQAIALAL-----EGEKPPRP-LTHDLLSDLLEALGAEVERVVI 74 (135)
T ss_dssp EEEEEETTTTEEEEEEEETTSSEEEEEE--HHHHHHHHHHH-----CT---SS---HHHHHHHHHHHTTEEEEEEEE
T ss_pred EEEEEcCCCCceEEEEEEcCCCEEEEEEECHHHHHHHHHHH-----cCCCCCCC-CHHHHHHHHHHHcCCEEEEEEE
Confidence 478899988875555 55564 33344443333222 22122223 3457888999999999888753
No 116
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=21.52 E-value=1.9e+02 Score=22.82 Aligned_cols=57 Identities=14% Similarity=0.073 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHhcCCcEEEEecCCCCeEEEEeCCCccccchhHHHHHHHHHHhhCCCCeEEEcccCCHHHHHHHHHcC
Q 027073 12 KTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDRG 90 (228)
Q Consensus 12 ~~~l~~l~~~v~~~~adlgia~D~DgDR~~vvd~~G~~l~~d~~~~Ll~~~ll~~~~~~~vv~~v~ss~~l~~ia~~~g 90 (228)
|..-..+.+.|.+..+|.||.++|-| . +.-++. .+.+| |...+.++....+.++.++
T Consensus 47 p~~a~~va~~V~~~~~~~GIliCGtG----------i-------G~siaA---NK~~G--IRAa~~~d~~~A~~ar~hN 103 (151)
T PTZ00215 47 PDFAEKVCEEVLKGEADTGILVCGSG----------I-------GISIAA---NKVKG--IRCALCHDHYTARMSRQHN 103 (151)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEcCCc----------H-------HHHHHH---hcCCC--eEEEEECCHHHHHHHHHhc
Confidence 44555666777777777777766543 1 111221 12233 6666666666666666654
No 117
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=21.51 E-value=2.4e+02 Score=19.69 Aligned_cols=38 Identities=11% Similarity=-0.094 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHhcCCcEEE--EecCCCCeEEEEeCCCccc
Q 027073 13 TAMALTRAAVLENNADLGV--VFDTDVDRSGVVDNKGNPI 50 (228)
Q Consensus 13 ~~l~~l~~~v~~~~adlgi--a~D~DgDR~~vvd~~G~~l 50 (228)
+.++.+.+.+.+.++++.- ..-+-|-++.+.|++|+.+
T Consensus 71 ~~~~~~~~~~~~~g~~v~~~~~~~~~g~~~~~~DPdGn~i 110 (114)
T cd07261 71 AAVDALYAEWQAKGVKIIQEPTEMDFGYTFVALDPDGHRL 110 (114)
T ss_pred HHHHHHHHHHHHCCCeEecCccccCCccEEEEECCCCCEE
Confidence 4577778888888877642 1223344566668888754
No 118
>PRK11761 cysM cysteine synthase B; Provisional
Probab=21.50 E-value=4.8e+02 Score=22.58 Aligned_cols=30 Identities=10% Similarity=0.051 Sum_probs=25.7
Q ss_pred CCeEEEcccCCHHHHHHHHHcCCeEEEEec
Q 027073 69 GTTIVTDARTSMALTKFITDRGGNHCLYRV 98 (228)
Q Consensus 69 ~~~vv~~v~ss~~l~~ia~~~g~~v~~t~v 98 (228)
...|++|-.++..-.+.++.+|++|+.++.
T Consensus 88 ~~~i~~p~~~~~~k~~~~~~~GA~v~~~~~ 117 (296)
T PRK11761 88 RMKLIMPENMSQERRAAMRAYGAELILVPK 117 (296)
T ss_pred CEEEEECCCCCHHHHHHHHHcCCEEEEeCC
Confidence 346888888888888899999999999986
No 119
>PRK12479 branched-chain amino acid aminotransferase; Provisional
Probab=21.47 E-value=5.1e+02 Score=22.33 Aligned_cols=69 Identities=7% Similarity=-0.054 Sum_probs=40.1
Q ss_pred HHHHhcCCcEEEEecCCCC-------eEEEEeCCCccccchhHHHHHHHHHHhhCCCCeEEEcccCCHHHHHHHHHcCCe
Q 027073 20 AAVLENNADLGVVFDTDVD-------RSGVVDNKGNPINGDKLIALMSAIVLKEHPGTTIVTDARTSMALTKFITDRGGN 92 (228)
Q Consensus 20 ~~v~~~~adlgia~D~DgD-------R~~vvd~~G~~l~~d~~~~Ll~~~ll~~~~~~~vv~~v~ss~~l~~ia~~~g~~ 92 (228)
..+++.++|=++.+|.||. -++++. +|++++|.. ...++--+ +-..+-+++++.|.+
T Consensus 164 ~ea~~~g~de~l~ld~~g~v~E~s~sNlf~v~-~~~l~TP~l--------------~~giL~GI-tR~~il~~~~~~g~~ 227 (299)
T PRK12479 164 IEAAQAGVLEALMLNQQGYVCEGSGDNVFVVK-DGKVLTPPS--------------YLGALEGI-TRNSVIELCERLSIP 227 (299)
T ss_pred HHHHHcCCCEEEEEcCCCcEEECCceEEEEEE-CCEEEeCCC--------------cCCCCcCH-HHHHHHHHHHHcCCe
Confidence 3345678999999998883 122222 234444420 11122222 223344678889999
Q ss_pred EEEEecchHHHH
Q 027073 93 HCLYRVGYRNVI 104 (228)
Q Consensus 93 v~~t~vG~k~i~ 104 (228)
|.+..+....+.
T Consensus 228 v~e~~i~~~~L~ 239 (299)
T PRK12479 228 CEERPFTRHDVY 239 (299)
T ss_pred EEEEeCCHHHHH
Confidence 999998877653
No 120
>cd03362 TOPRIM_TopoIA_TopoIII TOPRIM_TopoIA_TopoIII: The topoisomerase-primase (TORPIM) domain found in members of the type IA family of DNA topoisomerases (Topo IA) similar to topoisomerase III. Type IA DNA topoisomerases remove (relax) negative supercoils in the DNA by: cleaving one strand of the DNA duplex, covalently linking to the 5' phosphoryl end of the DNA break and, allowing the other strand of the duplex to pass through the gap. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). For topoisomerases the conserved glutamate is believed to act as a general base in strand joining and, as a general acid in strand cleavage. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=21.26 E-value=1e+02 Score=23.85 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=15.8
Q ss_pred ChhHHHHHHHHHHhcCCc-EEEEecCC
Q 027073 11 DKTAMALTRAAVLENNAD-LGVVFDTD 36 (228)
Q Consensus 11 ~~~~l~~l~~~v~~~~ad-lgia~D~D 36 (228)
..+.++.+.++++ +|| +.+|+|+|
T Consensus 85 ~~~~~~~ik~l~~--~ad~ii~atD~D 109 (151)
T cd03362 85 KKKQFKVLKKLAK--RADEIVIATDAD 109 (151)
T ss_pred HHHHHHHHHHHHh--CCCeEEEccCCC
Confidence 3456777777665 445 78888874
No 121
>PRK10665 nitrogen regulatory protein P-II 2; Provisional
Probab=21.18 E-value=1.2e+02 Score=22.58 Aligned_cols=28 Identities=21% Similarity=0.127 Sum_probs=18.4
Q ss_pred HHHHHHhhc-----ccccceeeecCCCCCCceeEEEee
Q 027073 194 EAIEEFRKY-----IEVLGLQKTNSHSANETICLIIQT 226 (228)
Q Consensus 194 ~li~~~r~~-----~~~gw~lv~~~~ps~~ep~~~~~~ 226 (228)
++++.+... ..|||++| .|-.+ .+||||
T Consensus 72 ~vv~~I~~~a~TG~~GDGkIfV---~pV~~--~~rIrT 104 (112)
T PRK10665 72 EVIDIISKAAYTGKIGDGKIFV---AELQR--VIRIRT 104 (112)
T ss_pred HHHHHHHHHhccCCCCCcEEEE---EEhhh--EEEecC
Confidence 445544443 45899999 55544 788887
No 122
>cd01028 TOPRIM_TopoIA TOPRIM_TopoIA: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in the type IA family of DNA topoisomerases (TopoIA). This subgroup contains proteins similar to the Type I DNA topoisomerases: E. coli topisomerases I and III, eukaryotic topoisomerase III and, ATP-dependent reverse gyrase found in archaea and thermophilic bacteria. Type IA DNA topoisomerases remove (relax) negative supercoils in the DNA. These enzymes cleave one strand of the DNA duplex, covalently link to the 5' phosphoryl end of the DNA break and allow the other strand of the duplex to pass through the gap. Reverse gyrase is also able to insert positive supercoils in the presence of ATP and negative supercoils in the presence of AMPPNP. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). For topoisomerases the conserved glutamate is believed to act as a general b
Probab=21.17 E-value=3.4e+02 Score=20.60 Aligned_cols=27 Identities=15% Similarity=0.309 Sum_probs=16.8
Q ss_pred CCChhHHHHHHHHHHhcCCcEEEEecCC
Q 027073 9 PEDKTAMALTRAAVLENNADLGVVFDTD 36 (228)
Q Consensus 9 Pe~~~~l~~l~~~v~~~~adlgia~D~D 36 (228)
+...+.++.+.+++++. -.+.+|+|+|
T Consensus 75 ~~~~~~~~~ik~l~~~~-d~iiiAtD~D 101 (142)
T cd01028 75 PDKKKQLKALKKLAKKA-DEIVLATDPD 101 (142)
T ss_pred CcHHHHHHHHHHHHhcC-CEEEEcCCCC
Confidence 33455677777766543 3577888875
No 123
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=21.07 E-value=1.5e+02 Score=26.69 Aligned_cols=33 Identities=15% Similarity=0.185 Sum_probs=26.8
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcCCcEEEEecC
Q 027073 2 FPNHIPNPEDKTAMALTRAAVLENNADLGVVFDT 35 (228)
Q Consensus 2 Fp~~~PnPe~~~~l~~l~~~v~~~~adlgia~D~ 35 (228)
|.+..|||. -+.+....+.+++.++|+.|++=|
T Consensus 64 ~~~v~~~p~-~~~v~~~~~~~~~~~~D~IIaiGG 96 (382)
T PRK10624 64 YDGVKPNPT-IEVVKEGVEVFKASGADYLIAIGG 96 (382)
T ss_pred eCCCCCCcC-HHHHHHHHHHHHhcCCCEEEEeCC
Confidence 556779996 677888889999999999888744
No 124
>PRK02991 D-serine dehydratase; Provisional
Probab=20.65 E-value=6.9e+02 Score=23.24 Aligned_cols=40 Identities=15% Similarity=0.165 Sum_probs=31.7
Q ss_pred CCeEEEcccCCHHHHHHHHHcCCeEEEEecchHHHHHHHh
Q 027073 69 GTTIVTDARTSMALTKFITDRGGNHCLYRVGYRNVIDKGV 108 (228)
Q Consensus 69 ~~~vv~~v~ss~~l~~ia~~~g~~v~~t~vG~k~i~~~~~ 108 (228)
...|++|-.+|..-.+.++.+|++|+.+..++..-.+..+
T Consensus 182 ~~tIvvP~~a~~~K~~~ir~~GAeVi~~~~~~~~a~~~A~ 221 (441)
T PRK02991 182 KVTVHMSADARQWKKDKLRSHGVTVVEYEGDYGVAVEEGR 221 (441)
T ss_pred CEEEEECCCCCHHHHHHHHhCCCEEEEECCCHHHHHHHHH
Confidence 4579999999999999999999999999877654433333
No 125
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=20.57 E-value=1.7e+02 Score=16.03 Aligned_cols=32 Identities=16% Similarity=0.112 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCCcEEEEecCCCCeEEEEeC
Q 027073 14 AMALTRAAVLENNADLGVVFDTDVDRSGVVDN 45 (228)
Q Consensus 14 ~l~~l~~~v~~~~adlgia~D~DgDR~~vvd~ 45 (228)
.+..+.+.+.+.+.....+.|.++.-+++++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~ 41 (49)
T smart00116 10 TLEEALELLREHGIRRLPVVDEEGRLVGIVTR 41 (49)
T ss_pred cHHHHHHHHHHhCCCcccEECCCCeEEEEEEH
Confidence 35566667777777777888877655777753
No 126
>PRK08813 threonine dehydratase; Provisional
Probab=20.41 E-value=4.9e+02 Score=23.38 Aligned_cols=35 Identities=9% Similarity=-0.009 Sum_probs=28.4
Q ss_pred CCeEEEcccCCHHHHHHHHHcCCeEEEEecchHHH
Q 027073 69 GTTIVTDARTSMALTKFITDRGGNHCLYRVGYRNV 103 (228)
Q Consensus 69 ~~~vv~~v~ss~~l~~ia~~~g~~v~~t~vG~k~i 103 (228)
...|++|-.++..-.+.++.+|++|+.+.-.+..-
T Consensus 106 ~~~IvvP~~~~~~K~~~i~~~GAeVv~~g~~~~~a 140 (349)
T PRK08813 106 QAITVMPHGAPQTKIAGVAHWGATVRQHGNSYDEA 140 (349)
T ss_pred CEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHH
Confidence 34689999999888888999999999997655433
No 127
>PLN02775 Probable dihydrodipicolinate reductase
Probab=20.37 E-value=5.9e+02 Score=22.34 Aligned_cols=84 Identities=17% Similarity=0.042 Sum_probs=52.7
Q ss_pred HHHHHHHhcCCcEEEEecC--CCCeEE--EEeCCCccccchhHHHHHHHHHHhhCCCCe-EEEcccCCHHHHH---HHHH
Q 027073 17 LTRAAVLENNADLGVVFDT--DVDRSG--VVDNKGNPINGDKLIALMSAIVLKEHPGTT-IVTDARTSMALTK---FITD 88 (228)
Q Consensus 17 ~l~~~v~~~~adlgia~D~--DgDR~~--vvd~~G~~l~~d~~~~Ll~~~ll~~~~~~~-vv~~v~ss~~l~~---ia~~ 88 (228)
.+.+.|.+.+..|.-+.|+ +|+-+. +.+..-.+..++.+..++.... .+ .+. |+++++.+..+.+ .|.+
T Consensus 26 ~~~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~~~~~~dl~~~l~~~~-~~--~~~~VvIDFT~P~a~~~~~~~~~~ 102 (286)
T PLN02775 26 AVAEAAVSAGLQLVPVSFTGPAGVGVTVEVCGVEVRLVGPSEREAVLSSVK-AE--YPNLIVVDYTLPDAVNDNAELYCK 102 (286)
T ss_pred HHHHHHhcCCCEEEEEeccccccccccceeccceeeeecCccHHHHHHHhh-cc--CCCEEEEECCChHHHHHHHHHHHH
Confidence 3445555577888888884 444444 2222113443455555543321 11 234 8999999999875 5778
Q ss_pred cCCeEEEEecchHHH
Q 027073 89 RGGNHCLYRVGYRNV 103 (228)
Q Consensus 89 ~g~~v~~t~vG~k~i 103 (228)
+|..++.-.||+..-
T Consensus 103 ~g~~~VvGTTG~~~e 117 (286)
T PLN02775 103 NGLPFVMGTTGGDRD 117 (286)
T ss_pred CCCCEEEECCCCCHH
Confidence 999999999998643
No 128
>PF12957 DUF3846: Domain of unknown function (DUF3846); InterPro: IPR024559 A family of uncharacterised proteins found by clustering human gut metagenomic sequences []. In a few cases it is found fused to the C terminus of ArdA (Pfam:PF07275). ArdA functions in bacterial conjugation to allow an unmodified plasmid to evade restriction in the recipient bacterium and yet acquire cognate modification [].
Probab=20.35 E-value=2.1e+02 Score=20.33 Aligned_cols=42 Identities=17% Similarity=0.145 Sum_probs=23.6
Q ss_pred CCCCCCCC-ChhHHHHHHHHHHhcCCcEEEEecCCCCeEEEEeCCCc
Q 027073 3 PNHIPNPE-DKTAMALTRAAVLENNADLGVVFDTDVDRSGVVDNKGN 48 (228)
Q Consensus 3 p~~~PnPe-~~~~l~~l~~~v~~~~adlgia~D~DgDR~~vvd~~G~ 48 (228)
|+..|.+. .+..++.++++| +-++-.+ ..+-+-..++|++|.
T Consensus 7 p~~~~~~~~i~~~l~~lq~~V---gG~ie~v-~l~~~~~l~~neeGk 49 (95)
T PF12957_consen 7 PGGRPEVIEIDNSLEALQKLV---GGYIEVV-YLDDGVVLYCNEEGK 49 (95)
T ss_pred CCCccEEEecCCCHHHHHHHH---CCeEEEE-ecCCCEEEEEeCccC
Confidence 33444442 234588888888 3333332 224455777799995
No 129
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=20.24 E-value=2.2e+02 Score=17.23 Aligned_cols=33 Identities=15% Similarity=0.156 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHhcCCcEEEEecCCCCeEEEEeC
Q 027073 13 TAMALTRAAVLENNADLGVVFDTDVDRSGVVDN 45 (228)
Q Consensus 13 ~~l~~l~~~v~~~~adlgia~D~DgDR~~vvd~ 45 (228)
..+.++.+.+.+.+.....+.|.++.=+++++.
T Consensus 16 ~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~ 48 (57)
T PF00571_consen 16 DSLEEALEIMRKNGISRLPVVDEDGKLVGIISR 48 (57)
T ss_dssp SBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEH
T ss_pred CcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEH
Confidence 467888899999999888888888666777643
No 130
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=20.09 E-value=1.3e+02 Score=23.74 Aligned_cols=31 Identities=10% Similarity=0.229 Sum_probs=23.6
Q ss_pred CCCCeEEEEeCCCccccchhHHHHHHHHHHh
Q 027073 35 TDVDRSGVVDNKGNPINGDKLIALMSAIVLK 65 (228)
Q Consensus 35 ~DgDR~~vvd~~G~~l~~d~~~~Ll~~~ll~ 65 (228)
+.++.+.+.|++|+.++-.++...+..+...
T Consensus 65 ~~~~~~i~Ld~~Gk~~sS~~fA~~l~~~~~~ 95 (155)
T PF02590_consen 65 PPNDYVILLDERGKQLSSEEFAKKLERWMNQ 95 (155)
T ss_dssp HTTSEEEEE-TTSEE--HHHHHHHHHHHHHT
T ss_pred cCCCEEEEEcCCCccCChHHHHHHHHHHHhc
Confidence 5678888889999999999999988888665
No 131
>PRK06110 hypothetical protein; Provisional
Probab=20.08 E-value=5.5e+02 Score=22.41 Aligned_cols=34 Identities=15% Similarity=0.118 Sum_probs=26.7
Q ss_pred CCeEEEcccCCHHHHHHHHHcCCeEEEEecchHH
Q 027073 69 GTTIVTDARTSMALTKFITDRGGNHCLYRVGYRN 102 (228)
Q Consensus 69 ~~~vv~~v~ss~~l~~ia~~~g~~v~~t~vG~k~ 102 (228)
...|++|-.++..-.+..+.+|++|+.+..++..
T Consensus 95 ~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~ 128 (322)
T PRK06110 95 AATIVVPHGNSVEKNAAMRALGAELIEHGEDFQA 128 (322)
T ss_pred CEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHH
Confidence 3468888888877778889999999998655543
No 132
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=20.04 E-value=1.7e+02 Score=26.19 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=25.8
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcC--CcEEEEec
Q 027073 2 FPNHIPNPEDKTAMALTRAAVLENN--ADLGVVFD 34 (228)
Q Consensus 2 Fp~~~PnPe~~~~l~~l~~~v~~~~--adlgia~D 34 (228)
|++..|||. -+.++...+.+++.+ +|+.|++=
T Consensus 55 ~~~v~~~pt-~~~v~~~~~~~~~~~~~~D~IIaiG 88 (355)
T TIGR03405 55 IDDVAPNPD-VAQLDGLYARLWGDEGACDLVIALG 88 (355)
T ss_pred eCCCCCCcC-HHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 677889996 677888888888877 88888874
Done!