Query 027076
Match_columns 228
No_of_seqs 273 out of 2632
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 04:37:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027076.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027076hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02957 copper, zinc superoxi 100.0 8.4E-71 1.8E-75 469.0 27.4 227 2-228 12-238 (238)
2 KOG4656 Copper chaperone for s 100.0 2.4E-69 5.2E-74 436.2 17.8 228 1-228 12-247 (247)
3 PLN02386 superoxide dismutase 100.0 3E-41 6.5E-46 268.2 16.5 126 72-197 3-151 (152)
4 PLN02642 copper, zinc superoxi 100.0 5.1E-41 1.1E-45 268.3 16.6 127 71-197 8-157 (164)
5 PRK15388 Cu/Zn superoxide dism 100.0 3.6E-37 7.9E-42 248.5 16.3 115 80-195 37-176 (177)
6 cd00305 Cu-Zn_Superoxide_Dismu 100.0 2.4E-36 5.2E-41 239.0 16.3 123 72-195 2-142 (144)
7 PRK10290 superoxide dismutase; 100.0 1.5E-36 3.2E-41 244.8 15.0 115 80-195 35-173 (173)
8 KOG0441 Cu2+/Zn2+ superoxide d 100.0 6.2E-36 1.3E-40 233.3 13.3 125 72-196 3-152 (154)
9 PF00080 Sod_Cu: Copper/zinc s 100.0 3.8E-35 8.2E-40 231.6 15.1 122 73-194 1-142 (142)
10 COG2032 SodC Cu/Zn superoxide 100.0 1.8E-32 3.9E-37 219.3 14.7 114 81-195 41-179 (179)
11 PF00403 HMA: Heavy-metal-asso 99.1 3.2E-10 6.8E-15 76.5 7.9 55 2-56 5-62 (62)
12 COG2608 CopZ Copper chaperone 99.0 3.3E-09 7.2E-14 73.9 7.6 59 2-60 9-70 (71)
13 KOG1603 Copper chaperone [Inor 98.3 2.1E-06 4.5E-11 60.0 6.7 59 1-59 10-69 (73)
14 PRK10671 copA copper exporting 97.5 0.00022 4.9E-09 71.1 6.6 58 2-61 10-67 (834)
15 COG2217 ZntA Cation transport 97.4 0.00033 7.2E-09 68.4 6.8 57 2-59 9-69 (713)
16 KOG0207 Cation transport ATPas 97.2 0.001 2.3E-08 65.5 7.0 64 2-65 1-66 (951)
17 TIGR00003 copper ion binding p 96.6 0.016 3.5E-07 36.3 7.4 56 2-57 9-67 (68)
18 KOG0207 Cation transport ATPas 96.4 0.0081 1.8E-07 59.4 6.6 60 2-61 153-215 (951)
19 PRK10671 copA copper exporting 95.5 0.032 7E-07 55.8 6.8 58 2-59 106-163 (834)
20 PRK11033 zntA zinc/cadmium/mer 94.9 0.076 1.7E-06 52.6 7.0 59 2-60 60-119 (741)
21 TIGR02052 MerP mercuric transp 85.9 7.1 0.00015 26.4 7.7 58 2-59 30-90 (92)
22 PRK13748 putative mercuric red 70.6 18 0.00039 34.3 7.6 61 2-62 7-69 (561)
23 PF07452 CHRD: CHRD domain; I 69.1 16 0.00036 27.0 5.7 36 81-116 19-55 (119)
24 cd00371 HMA Heavy-metal-associ 68.7 17 0.00037 19.8 7.3 38 2-39 5-42 (63)
25 PF01206 TusA: Sulfurtransfera 67.4 22 0.00047 23.7 5.5 51 2-61 6-58 (70)
26 PF02680 DUF211: Uncharacteriz 62.5 28 0.00061 25.5 5.4 50 12-61 21-78 (95)
27 COG1888 Uncharacterized protei 60.1 33 0.00071 24.9 5.3 50 12-61 23-80 (97)
28 smart00754 CHRD A domain in th 60.1 34 0.00073 25.5 5.9 36 81-116 19-54 (118)
29 PRK11018 hypothetical protein; 41.1 1.2E+02 0.0026 20.9 6.0 50 2-60 14-65 (78)
30 cd03421 SirA_like_N SirA_like_ 40.1 1.1E+02 0.0023 20.1 5.8 50 2-61 5-56 (67)
31 PF13732 DUF4162: Domain of un 34.8 1.5E+02 0.0032 20.2 5.8 48 17-65 26-74 (84)
32 PRK14054 methionine sulfoxide 33.3 95 0.0021 25.2 4.8 46 7-52 10-77 (172)
33 PF07731 Cu-oxidase_2: Multico 26.4 55 0.0012 24.6 2.2 20 97-116 43-62 (138)
34 PRK00058 methionine sulfoxide 25.4 1.5E+02 0.0032 25.0 4.7 45 7-51 52-118 (213)
35 cd03422 YedF YedF is a bacteri 24.3 2.2E+02 0.0048 18.9 5.7 50 2-60 5-56 (69)
36 cd03420 SirA_RHOD_Pry_redox Si 22.5 2.4E+02 0.0053 18.7 5.9 51 2-61 5-57 (69)
37 PF11088 RL11D: Glycoprotein e 22.3 1.6E+02 0.0036 21.5 3.8 30 186-215 31-62 (98)
38 PRK05528 methionine sulfoxide 21.4 2.4E+02 0.0053 22.4 5.1 46 7-52 8-70 (156)
39 COG4296 Uncharacterized protei 20.8 1.5E+02 0.0033 23.2 3.6 34 146-183 113-146 (156)
40 PF07477 Glyco_hydro_67C: Glyc 20.8 30 0.00066 29.3 -0.2 8 211-218 147-154 (225)
41 PF11491 DUF3213: Protein of u 20.1 1.7E+02 0.0036 21.0 3.4 51 10-60 13-66 (88)
No 1
>PLN02957 copper, zinc superoxide dismutase
Probab=100.00 E-value=8.4e-71 Score=469.03 Aligned_cols=227 Identities=78% Similarity=1.215 Sum_probs=215.6
Q ss_pred CCCcChhHHHHHHHHHhCCCCeeEEEEecCCcEEEEEecCChhHHHHHHHhcCccceeeccCCCccccceeeEEEecCCc
Q 027076 2 VDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLVGQGVPEDFLVSAAVAEFKGPD 81 (228)
Q Consensus 2 ~Gm~C~~C~~~Iek~L~~~~GV~~v~vdl~~~~v~V~~~~~~~~i~~aI~~aGy~~~~~~~~~~~~~~~~~Ava~~~g~~ 81 (228)
++|.|..|+..+++.|++++||..+.+++..+++.+.+....+.+.+.+++.||.+++++.+.++++.++.|++.++|..
T Consensus 12 VgMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~~~~~~I~~aIe~~Gy~a~~~~~~~~~~~~~~~av~~~~g~~ 91 (238)
T PLN02957 12 VDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGSSPVKAMTAALEQTGRKARLIGQGDPEDFLVSAAVAEFKGPD 91 (238)
T ss_pred ECccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEecCCHHHHHHHHHHcCCcEEEecCCCccccccceEEEEecCCc
Confidence 47999999999999999999999999999999999987777888999999999999999887777767778999999989
Q ss_pred eEEEEEEEEeCCCcEEEEEEECCCCCCceeeEEeccCCCCCCccccCccccCCCCCCCCCCCCCCcceeeCCCccEEEEE
Q 027076 82 VFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTKGAVSTGRVYNPKIEGSAKEPLGDLGTVVADEKGEAFFSG 161 (228)
Q Consensus 82 v~G~i~f~q~~~~~v~v~~~i~Gl~~g~h~~hIH~~gd~~~~c~saGgh~np~~~~~~~~~~GDLgni~~~~~G~~~~~~ 161 (228)
|.|+++|+|.+++.++|+++|+||+||.|+|||||+|||+++|.|+|+||||++++|+.+|+||||||.++++|++++++
T Consensus 92 v~G~v~~~~~~~~~v~i~~~~~GL~pg~hg~hiHe~Gd~~~~~~saG~hfnp~~~~h~~~h~GDLgni~~~~~G~a~~~~ 171 (238)
T PLN02957 92 IFGVVRFAQVSMELARIEAAFSGLSPGTHGWSINEYGDLTRGAASTGKVYNPSDDDTDEEPLGDLGTLEADENGEATFSG 171 (238)
T ss_pred eEEEEEEEEcCCCCEEEEEEEcCCCCCcEEEEEcCCCCCCCCccccCCCCCCccCCCCCCCCCccCCEEeCCCceEEEEE
Confidence 99999999988667999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecceecCCcCceEEEEecCCCCCCCceEEEEEeecccCCcCCCeEEccCCccccccCCCCCccCCC
Q 027076 162 VKEMLRVADLIGRSIVVYGTEDKSDSGVTAAVIARSAGVGENYKKICACDGTIIWESSSNDFVASKV 228 (228)
Q Consensus 162 ~~~~l~l~~iiGRSiVIh~~~dd~g~r~aCgvI~rsag~~~n~k~~c~c~g~~~w~~~~~~~~~~~~ 228 (228)
.+..++|++|+|||||||+++|+.+++++||||+||||+|||+||||+||||||||||.+||.+++|
T Consensus 172 ~~~~~~l~~iiGrs~vih~~~D~~~~~~~~gvi~rsag~~~n~k~~c~c~g~~~w~~~~~~~~~~~~ 238 (238)
T PLN02957 172 TKEKLKVWDLIGRSLAVYATADKSGPGIAAAVIARSAGVGENYKKLCSCDGTVIWESTNSDFVASKV 238 (238)
T ss_pred ECCCcCccccCCcEEEEEeCCCCCCCCeEEEEEecccccccCCceEEeCCCcEEecccCCCcccCCC
Confidence 9999999999999999999999988899999999999999999999999999999999999999876
No 2
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-69 Score=436.16 Aligned_cols=228 Identities=47% Similarity=0.739 Sum_probs=218.0
Q ss_pred CCCCcChhHHHHHHHHHhCCCCeeEEEEecCCcEEEEEecCChhHHHHHHHhcCccceeeccCCCccccceeeEEEecCC
Q 027076 1 MVDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLVGQGVPEDFLVSAAVAEFKGP 80 (228)
Q Consensus 1 ~~Gm~C~~C~~~Iek~L~~~~GV~~v~vdl~~~~v~V~~~~~~~~i~~aI~~aGy~~~~~~~~~~~~~~~~~Ava~~~g~ 80 (228)
++.|+|++|++.|++.|+.++||.++++|+..+.+.|....++++|+++|+.+|.++.+++.+.|+..++..+++.+.++
T Consensus 12 aV~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~ts~p~s~i~~~le~tGr~Avl~G~G~psaval~at~a~~~~~ 91 (247)
T KOG4656|consen 12 AVQMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVETSVPPSEIQNTLENTGRDAVLRGAGKPSAVALLATVAKYTGP 91 (247)
T ss_pred EEechhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEccCChHHHHHHHHhhChheEEecCCchhHHHHHHHHHHhcCC
Confidence 36799999999999999999999999999999999999999999999999999999999999999877777888988887
Q ss_pred -ceEEEEEEEEeCCCcEEEEEEECCCCCCceeeEEeccCCCCCCccccCccccCCCCCCCCCCCCCCcceeeCCCccEEE
Q 027076 81 -DVFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTKGAVSTGRVYNPKIEGSAKEPLGDLGTVVADEKGEAFF 159 (228)
Q Consensus 81 -~v~G~i~f~q~~~~~v~v~~~i~Gl~~g~h~~hIH~~gd~~~~c~saGgh~np~~~~~~~~~~GDLgni~~~~~G~~~~ 159 (228)
.|.|.+||.|.....++|+++++||+||.|++||||+||+++||.|+|.||||+..+|+....|||||+.++++|.++|
T Consensus 92 ~~v~GvvRf~qvt~ek~lid~tvdGlspG~h~~~Ihe~GDlsng~~StG~~ynpf~~p~g~~~~gDLGn~~ad~nGraf~ 171 (247)
T KOG4656|consen 92 QAVQGVVRFVQVTEEKTLIDGTVDGLSPGLHGLHIHEYGDLSNGCESTGKHYNPFQEPHGCPNEGDLGNNRADKNGRAFF 171 (247)
T ss_pred ccceeEEEEEEeccccEEEEEEecCCCCcccceeEeeccccccchhhcccccCCCcCCCCCCCcccccccccccCCcEEE
Confidence 8999999999997789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecceecCCcCceEEEEecCCCC-------CCCceEEEEEeecccCCcCCCeEEccCCccccccCCCCCccCCC
Q 027076 160 SGVKEMLRVADLIGRSIVVYGTEDK-------SDSGVTAAVIARSAGVGENYKKICACDGTIIWESSSNDFVASKV 228 (228)
Q Consensus 160 ~~~~~~l~l~~iiGRSiVIh~~~dd-------~g~r~aCgvI~rsag~~~n~k~~c~c~g~~~w~~~~~~~~~~~~ 228 (228)
++.|..|+.|++||||+||.+..|| +|+|++||+|+||||+|||+||+|||+|+||||||.++|+.++.
T Consensus 172 s~~de~LkvwdlIGRsvVi~k~~ddlgg~p~nsge~la~gvIARSAGv~eN~KqiCaCdG~tiWeern~~la~k~r 247 (247)
T KOG4656|consen 172 SAPDEKLKVWDLIGRSVVISKSLDDLGGEPGNSGERLACGVIARSAGVWENNKQICACDGKTIWEERNDPLAGKIR 247 (247)
T ss_pred ecccccccHhhhhceeEEEeccccccCCCCCCcCcceeEEEeeeccccccCcceeeecCCeEehhhcCCcccccCC
Confidence 9999999999999999999999787 38999999999999999999999999999999999999998763
No 3
>PLN02386 superoxide dismutase [Cu-Zn]
Probab=100.00 E-value=3e-41 Score=268.16 Aligned_cols=126 Identities=30% Similarity=0.521 Sum_probs=117.4
Q ss_pred eeEEEecCC-ceEEEEEEEEeCCCcEEEEEEECCCCCCceeeEEeccCCCCCCccccCccccCCCCCCC-----CCCCCC
Q 027076 72 AAVAEFKGP-DVFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTKGAVSTGRVYNPKIEGSA-----KEPLGD 145 (228)
Q Consensus 72 ~Ava~~~g~-~v~G~i~f~q~~~~~v~v~~~i~Gl~~g~h~~hIH~~gd~~~~c~saGgh~np~~~~~~-----~~~~GD 145 (228)
+|+|.|++. .|.|+++|+|..++.+.|+++++||+||.|+|||||+|||+++|.|+||||||++..|+ .+|+||
T Consensus 3 ~a~a~~~~~~~v~G~v~f~q~~~g~v~i~~~~~GL~pG~hg~HIHe~Gd~~~g~~SaGgHfnP~~~~Hg~~~~~~~H~GD 82 (152)
T PLN02386 3 KAVAVLNSSEGVKGTIFFTQEGDGPTTVTGSLSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDENRHAGD 82 (152)
T ss_pred eEEEEEcCCCCCEEEEEEEEcCCCCEEEEEEEeCCCCCceeEEEeCCCCCCCCcccccCccCCCCCCCCCCCcccCcccc
Confidence 689999875 49999999998877799999999999999999999999999999999999999999995 689999
Q ss_pred CcceeeCCCccEEEEEEecceec---CCcCceEEEEecCCCCC--------------CCceEEEEEeec
Q 027076 146 LGTVVADEKGEAFFSGVKEMLRV---ADLIGRSIVVYGTEDKS--------------DSGVTAAVIARS 197 (228)
Q Consensus 146 Lgni~~~~~G~~~~~~~~~~l~l---~~iiGRSiVIh~~~dd~--------------g~r~aCgvI~rs 197 (228)
||||.++++|+++++++++.++| ++|+|||||||+++||+ |+|+|||||+++
T Consensus 83 LgNi~~~~~G~a~~~~~~~~~~L~g~~~i~GrslVIHa~~DD~~~~~~~~s~~~G~aG~RiACgvI~~~ 151 (152)
T PLN02386 83 LGNVTVGDDGTATFTIVDKQIPLTGPNSIVGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQ 151 (152)
T ss_pred ccCEEECCCCeEEEEEECCceEeCCCCccCCcEEEEEccCCCcCCCcccccccCCCCCceEEEEEEEec
Confidence 99999999999999999999998 69999999999999985 579999999965
No 4
>PLN02642 copper, zinc superoxide dismutase
Probab=100.00 E-value=5.1e-41 Score=268.30 Aligned_cols=127 Identities=32% Similarity=0.497 Sum_probs=117.6
Q ss_pred eeeEEEecCC-ceEEEEEEEEeCCCcEEEEEEECCCCCCceeeEEeccCCCCCCccccCccccCCCCCCC-----CCCCC
Q 027076 71 SAAVAEFKGP-DVFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTKGAVSTGRVYNPKIEGSA-----KEPLG 144 (228)
Q Consensus 71 ~~Ava~~~g~-~v~G~i~f~q~~~~~v~v~~~i~Gl~~g~h~~hIH~~gd~~~~c~saGgh~np~~~~~~-----~~~~G 144 (228)
.+|+|.+++. .+.|+++|+|..++.++|+++|+||+||.|+|||||+|||+++|.|+|+||||++..|+ .+|+|
T Consensus 8 ~~A~a~~~g~~~v~G~v~f~q~~~g~v~I~~~v~GL~pG~HG~HIHe~Gd~~~g~~SaGgHfNP~~~~HG~~~~~~rH~G 87 (164)
T PLN02642 8 LRAVALIAGDNNVRGCLQFVQDIFGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGPHFNPLNRVHGPPNEEERHAG 87 (164)
T ss_pred eeEEEEEcCCCCcEEEEEEEECCCCcEEEEEEEcCCCCCceeEEEcCCCcCCCCcccccCcccCCCCcCCCCCcCCCccc
Confidence 3789999865 59999999998866799999999999999999999999999999999999999999995 68999
Q ss_pred CCcceeeCCCccEEEEEEecceec---CCcCceEEEEecCCCCC--------------CCceEEEEEeec
Q 027076 145 DLGTVVADEKGEAFFSGVKEMLRV---ADLIGRSIVVYGTEDKS--------------DSGVTAAVIARS 197 (228)
Q Consensus 145 DLgni~~~~~G~~~~~~~~~~l~l---~~iiGRSiVIh~~~dd~--------------g~r~aCgvI~rs 197 (228)
|||||.++++|+++++++++.++| ++|+|||||||+++||+ |.|+|||||+.+
T Consensus 88 DLgNi~a~~~G~a~~~~~~~~i~L~g~~~iiGRalVVHa~~DD~~~~~~~~s~~tGnaG~RiACGVI~~~ 157 (164)
T PLN02642 88 DLGNILAGSDGVAEILIKDKHIPLSGQYSILGRAVVVHADPDDLGKGGHKLSKSTGNAGSRVGCGIIGLQ 157 (164)
T ss_pred ccCCEEECCCCeEEEEEEcCceecCCCCCcCCcEEEEeccCCccCcCcccccccCCCCCceEEEEEEEec
Confidence 999999999999999999999987 69999999999999986 479999999964
No 5
>PRK15388 Cu/Zn superoxide dismutase; Provisional
Probab=100.00 E-value=3.6e-37 Score=248.47 Aligned_cols=115 Identities=23% Similarity=0.410 Sum_probs=104.6
Q ss_pred CceEEEEEEEEeCCCcEEEEEEECCCCCCceeeEEeccCCCCC----C----ccccCccccCCCC-CCC-----CCCCCC
Q 027076 80 PDVFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTK----G----AVSTGRVYNPKIE-GSA-----KEPLGD 145 (228)
Q Consensus 80 ~~v~G~i~f~q~~~~~v~v~~~i~Gl~~g~h~~hIH~~gd~~~----~----c~saGgh~np~~~-~~~-----~~~~GD 145 (228)
.++.|+++|+|..++ ++|+++++||+||.|+|||||+|||+. | |.||||||||++. .|+ .+|+||
T Consensus 37 g~~~G~v~f~~~~~g-v~I~~~l~GL~pG~HGfHIHe~GdC~~~~~~G~~~~~~SAGgHfNP~~~~~Hg~p~~~~~H~GD 115 (177)
T PRK15388 37 GENIGEITVSETPYG-LLFTPHLNGLTPGIHGFHVHTNPSCMPGMKDGKEVPALMAGGHLDPEKTGKHLGPYNDKGHLGD 115 (177)
T ss_pred CceEEEEEEEEcCCc-EEEEEEEcCCCCcceEEEEccCCCccCcccCCCcccccccCCCcCCCCCCCCCCCCCCCCCcCc
Confidence 478899999998765 999999999999999999999999973 3 8999999999987 563 589999
Q ss_pred CcceeeCCCccEEEEEEeccee-cCCcCceEEEEecCCCCC----------CCceEEEEEe
Q 027076 146 LGTVVADEKGEAFFSGVKEMLR-VADLIGRSIVVYGTEDKS----------DSGVTAAVIA 195 (228)
Q Consensus 146 Lgni~~~~~G~~~~~~~~~~l~-l~~iiGRSiVIh~~~dd~----------g~r~aCgvI~ 195 (228)
||||.++++|++.++++++.+. +++++|||||||+++||+ |.|+|||||.
T Consensus 116 LpNi~a~~dG~a~~~~~~~~~~~~~~i~GralVIHa~~DD~~~~p~~~GnaG~RiACGVI~ 176 (177)
T PRK15388 116 LPGLVVNADGTATYPLLAPRLKSLSELKGHSLMIHKGGDNYSDKPAPLGGGGARFACGVIE 176 (177)
T ss_pred CcCEEECCCccEEEEEEeCCcccCcccCCcEEEEECCCCCCCCCCCcCCCCCceEEEEeec
Confidence 9999999999999999998885 799999999999999986 5799999996
No 6
>cd00305 Cu-Zn_Superoxide_Dismutase Copper/zinc superoxide dismutase (SOD). superoxide dismutases catalyse the conversion of superoxide radicals to molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the human SOD1 gene causes familial amyotrophic lateral sclerosis (Lou Gehrig's disease). Cytoplasmic and periplasmic SODs exist as dimers, whereas chloroplastic and extracellular enzymes exist as tetramers. Structure supports independent functional evolution in prokaryotes (P-class) and eukaryotes (E-class) [PMID:.8176730].
Probab=100.00 E-value=2.4e-36 Score=238.98 Aligned_cols=123 Identities=39% Similarity=0.593 Sum_probs=114.3
Q ss_pred eeEEEecCC--ceEEEEEEEEeCCCcEEEEEEECCCCCCceeeEEeccCCCCCCccccCccccCCCCCCC-----CCCCC
Q 027076 72 AAVAEFKGP--DVFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTKGAVSTGRVYNPKIEGSA-----KEPLG 144 (228)
Q Consensus 72 ~Ava~~~g~--~v~G~i~f~q~~~~~v~v~~~i~Gl~~g~h~~hIH~~gd~~~~c~saGgh~np~~~~~~-----~~~~G 144 (228)
+|+|.|++. .++|+++|+|.++ .++|+++++||+||.|+|||||+|||+.+|.|+|+||||++..|+ .+|+|
T Consensus 2 ~a~~~l~~~~g~v~G~v~f~q~~~-~v~v~~~l~GL~pG~hg~HIHe~Gd~~~~~~saGgh~np~~~~hg~~~~~~~h~G 80 (144)
T cd00305 2 SAVAVLKGPDGKVVGTVTFTQQSG-GVTITGELSGLTPGLHGFHIHEFGDCTNGCTSAGGHFNPFGKKHGGPNDEGRHAG 80 (144)
T ss_pred cEEEEEECCCCceEEEEEEEECCC-CEEEEEEEECCCCCceeEEEEecCCCCCccccccCccCCCCCCCCCCCCCCCCCC
Confidence 478888765 5999999999987 699999999999999999999999999999999999999999985 57999
Q ss_pred CCcceeeCCCccEEEEEEecceecC---CcCceEEEEecCCCCC--------CCceEEEEEe
Q 027076 145 DLGTVVADEKGEAFFSGVKEMLRVA---DLIGRSIVVYGTEDKS--------DSGVTAAVIA 195 (228)
Q Consensus 145 DLgni~~~~~G~~~~~~~~~~l~l~---~iiGRSiVIh~~~dd~--------g~r~aCgvI~ 195 (228)
|||||.++++|++++++++++++|+ +++|||||||+.+||+ +.|++||+|.
T Consensus 81 DLgni~~~~~G~~~~~~~~~~~~l~~~~~iiGrsivVH~~~Dd~~~~p~~~sg~~~~~G~~~ 142 (144)
T cd00305 81 DLGNIVADKDGVATVSVLDPLISLKGGNSIIGRSLVVHAGQDDLGKGPDELSGGTGNAGVRV 142 (144)
T ss_pred cCCCEEECCCCeEEEEEEeCcEEcCCCCCcCCcEEEEecCCCCCCCCCCcccccceeeEeEE
Confidence 9999999999999999999999997 9999999999999986 5799999984
No 7
>PRK10290 superoxide dismutase; Provisional
Probab=100.00 E-value=1.5e-36 Score=244.81 Aligned_cols=115 Identities=22% Similarity=0.389 Sum_probs=103.9
Q ss_pred CceEEEEEEEEeCCCcEEEEEEECCCCCCceeeEEeccCCCC----CC----ccccCccccCCCC-CCC----CCCCCCC
Q 027076 80 PDVFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLT----KG----AVSTGRVYNPKIE-GSA----KEPLGDL 146 (228)
Q Consensus 80 ~~v~G~i~f~q~~~~~v~v~~~i~Gl~~g~h~~hIH~~gd~~----~~----c~saGgh~np~~~-~~~----~~~~GDL 146 (228)
..+.|+++|+|..++ ++|+++++||+||.|+|||||+|||+ +| |.|+||||||++. .|+ .+|+|||
T Consensus 35 g~~~G~v~f~~~~~g-v~i~~~l~GL~pG~HGfHIHe~Gdc~~~~~~G~~~~~~sAGgHfNP~~~~~hg~p~~~~H~GDL 113 (173)
T PRK10290 35 GQSIGSVTITETDKG-LEFSPDLKALPPGEHGFHIHAKGSCQPATKDGKASAAEAAGGHLDPQNTGKHEGPEGAGHLGDL 113 (173)
T ss_pred CceEEEEEEEEcCCc-EEEEEEEcCCCCCceEEEEeCCCccCCcccCCCcccccccCCccCCCCCcCCCCCCCCCCcCcc
Confidence 478899999999765 99999999999999999999999998 33 8999999999998 552 5799999
Q ss_pred cceeeCCCccEEEEEEeccee-cCCcCceEEEEecCCCCC----------CCceEEEEEe
Q 027076 147 GTVVADEKGEAFFSGVKEMLR-VADLIGRSIVVYGTEDKS----------DSGVTAAVIA 195 (228)
Q Consensus 147 gni~~~~~G~~~~~~~~~~l~-l~~iiGRSiVIh~~~dd~----------g~r~aCgvI~ 195 (228)
|||+++++|+++++++++.++ +++++|||||||+++||+ |.|+|||||.
T Consensus 114 ~ni~a~~dG~a~~~~~~~~~~~~~~i~GralVIH~~~DD~~~~~~~~GnaG~RiACGVI~ 173 (173)
T PRK10290 114 PALVVNNDGKATDPVIAPRLKSLDEVKDKALMVHVGGDNMSDQPKPLGGGGERYACGVIK 173 (173)
T ss_pred cCEEECCCeeEEEEEEeCCccCccccCCcEEEEECCCCCCCCCCCcCCCCcceEEEEeEC
Confidence 999999999999999988876 679999999999999986 5799999994
No 8
>KOG0441 consensus Cu2+/Zn2+ superoxide dismutase SOD1 [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.2e-36 Score=233.26 Aligned_cols=125 Identities=34% Similarity=0.539 Sum_probs=115.2
Q ss_pred eeEEEecCC--ceEEEEEEEEeC-CCcEEEEEEECCCCCCceeeEEeccCCCCCCccccCccccCCCCCCC-----CCCC
Q 027076 72 AAVAEFKGP--DVFGVVRLAQVN-MELARIEANFSGLSPGKHGWSINEFGDLTKGAVSTGRVYNPKIEGSA-----KEPL 143 (228)
Q Consensus 72 ~Ava~~~g~--~v~G~i~f~q~~-~~~v~v~~~i~Gl~~g~h~~hIH~~gd~~~~c~saGgh~np~~~~~~-----~~~~ 143 (228)
.|+|.+.++ .|.|++.|+|.. ..++.|++.++||+||.|+||||+|||.++||.|||+||||.+..|+ .||.
T Consensus 3 ~~~avl~g~~~~V~G~i~F~Q~~~~~~~~v~~~i~GL~pg~hgfHvHqfGD~t~GC~SaGphFNp~~~~hg~p~~~~rH~ 82 (154)
T KOG0441|consen 3 QAVAVLEGDEIQVIGVITFEQFLPGEPLRVSGEVTGLPPGKHGFHVHQFGDNTNGCKSAGPHFNPNKKTHGGPVDEVRHV 82 (154)
T ss_pred ceEEEEecCCCCceeEEEEEEcCCCCcEEEEEEEecCCCceeeEEEEeccCCCCChhcCCCCCCCcccCCCCcccccccc
Confidence 578888875 699999999954 34899999999999999999999999999999999999999999995 5799
Q ss_pred CCCcceeeCCCccEEEEEEecceec---CCcCceEEEEecCCCCC--------------CCceEEEEEee
Q 027076 144 GDLGTVVADEKGEAFFSGVKEMLRV---ADLIGRSIVVYGTEDKS--------------DSGVTAAVIAR 196 (228)
Q Consensus 144 GDLgni~~~~~G~~~~~~~~~~l~l---~~iiGRSiVIh~~~dd~--------------g~r~aCgvI~r 196 (228)
|||||+.+..+|.+...+.+..++| ++++|||+|||+.+||+ |+|+|||+|+.
T Consensus 83 gdlGnv~~~~~G~~~~~~~d~~i~l~g~~sivgrs~vvHa~~ddLg~G~~~~s~ktgnag~r~aCgvi~~ 152 (154)
T KOG0441|consen 83 GDLGNVDAKDDGVISRVFGDSVITLSGPNSIVGRSVVVHAGEDDLGKGGHELSKKTGNAGARPACGVIGI 152 (154)
T ss_pred ccccccccCCCceEEEEEccceEEEeeccccceeEEEEeccCccccCCchhhhhhccccCCCccceeeec
Confidence 9999999999999999999999998 69999999999999985 78999999985
No 9
>PF00080 Sod_Cu: Copper/zinc superoxide dismutase (SODC); InterPro: IPR001424 Superoxide dismutases are ubiquitous metalloproteins that prevent damage by oxygen-mediated free radicals by catalysing the dismutation of superoxide into molecular oxygen and hydrogen peroxide []. Superoxide is a normal by-product of aerobic respiration and is produced by a number of reactions, including oxidative phosphorylation and photosynthesis. The dismutase enzymes have a very high catalytic efficiency due to the attraction of superoxide to the ions bound at the active site [, ]. There are three forms of superoxide dismutase, depending on the metal cofactor: Cu/Zn (which binds both copper and zinc), Fe and Mn types. The Fe and Mn forms are similar in their primary, secondary and tertiary structures, but are distinct from the Cu/Zn form []. Prokaryotes and protists contain Mn, Fe or both types, while most eukaryotic organisms utilise the Cu/Zn type.; GO: 0046872 metal ion binding, 0006801 superoxide metabolic process, 0055114 oxidation-reduction process; PDB: 2K4W_A 2APS_B 2WWN_B 2WWO_B 1ESO_A 2AQM_A 3F7L_A 3F7K_A 2E47_A 2E46_A ....
Probab=100.00 E-value=3.8e-35 Score=231.62 Aligned_cols=122 Identities=35% Similarity=0.531 Sum_probs=112.2
Q ss_pred eEEEec--CCceEEEEEEEEeCCC-cEEEEEEECCCCCCceeeEEeccCCC-CCCccccCccccCCCCCCC-----CCCC
Q 027076 73 AVAEFK--GPDVFGVVRLAQVNME-LARIEANFSGLSPGKHGWSINEFGDL-TKGAVSTGRVYNPKIEGSA-----KEPL 143 (228)
Q Consensus 73 Ava~~~--g~~v~G~i~f~q~~~~-~v~v~~~i~Gl~~g~h~~hIH~~gd~-~~~c~saGgh~np~~~~~~-----~~~~ 143 (228)
|+|.|+ +.+|+|+|+|+|..++ .+.|+++++||++|.|+||||++|++ +++|.|+|+||||.++.|. .++.
T Consensus 1 a~a~l~~~~~~v~G~v~f~q~~~~~~~~v~~~~~GL~~g~~~~hIH~~g~~~~~~c~s~G~h~np~~~~~~~~~~~~~~~ 80 (142)
T PF00080_consen 1 AVAVLKGAGGKVKGTVTFTQVSDGDGVQVTVSLNGLPPGQHGYHIHENGDCSSNNCSSAGGHYNPTNVPHGGPSADNCHA 80 (142)
T ss_dssp EEEEEBETSSSEEEEEEEEEETTTTEEEEEEEEESSSSEEEEEEEESSSTCSTTTTGGG-SBCETTTSSSSSTTSSSSCT
T ss_pred CEEEEeCCCCCeEEEEEEEEeCCCCCEEEEEEEECCCCCCceEEEEeccccccccccccceecCccccccCCcccccccc
Confidence 789997 4589999999999954 59999999999999999999999999 7789999999999998884 4799
Q ss_pred CCCcceeeCCCccEEEEEEecceecC---CcCceEEEEecCCCCC--------CCceEEEEE
Q 027076 144 GDLGTVVADEKGEAFFSGVKEMLRVA---DLIGRSIVVYGTEDKS--------DSGVTAAVI 194 (228)
Q Consensus 144 GDLgni~~~~~G~~~~~~~~~~l~l~---~iiGRSiVIh~~~dd~--------g~r~aCgvI 194 (228)
|||+++.++.+|.+++.|+++.|+|+ +|+|||||||+.+||+ |.|+|||+|
T Consensus 81 GDL~~~~~~~~G~~~~~~~~~~l~l~g~~siiGRSiVIH~~~~d~~~~~~g~~g~RlACg~I 142 (142)
T PF00080_consen 81 GDLGNKYVDADGSASFTFTDSNLSLSGPNSIIGRSIVIHSGPDDFTSQPTGNAGARLACGVI 142 (142)
T ss_dssp TEEEEEEESTTSEEEEEEEESSSBSSSTTBHTTSEEEEESSSSTTTHHHHTTTTSEEEEEEE
T ss_pred ccccccccccCCceEEEEEeeeEeccCCccccCCEEEEEeCCCCcccccCCCCCCcEEEEeC
Confidence 99999999999999999999999997 9999999999999965 899999998
No 10
>COG2032 SodC Cu/Zn superoxide dismutase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-32 Score=219.27 Aligned_cols=114 Identities=25% Similarity=0.451 Sum_probs=104.8
Q ss_pred ceEEEEEEEEeCCCcEEEEEEECCCCCCceeeEEeccCCCCC------CccccCccccCC-CCCCC-----CCCCCCCcc
Q 027076 81 DVFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTK------GAVSTGRVYNPK-IEGSA-----KEPLGDLGT 148 (228)
Q Consensus 81 ~v~G~i~f~q~~~~~v~v~~~i~Gl~~g~h~~hIH~~gd~~~------~c~saGgh~np~-~~~~~-----~~~~GDLgn 148 (228)
+..|+++|++...+ +.++..+.+|+||.|+|||||+|+|++ .|.||||||||. ...|+ ..|+|||+|
T Consensus 41 ~~vG~vt~~e~~~g-~~~~~~~~~L~pg~hGfHIHe~G~C~pkdgk~~~~~sAGGHfdP~~~~~Hg~p~~~~~H~GDLP~ 119 (179)
T COG2032 41 KDVGTVTITETGYG-LLFTPALGGLPPGEHGFHIHEKGSCTPKDGKPVDFLSAGGHFDPQNTKKHGGPNADGGHAGDLPN 119 (179)
T ss_pred ceeEEEEEeecCCc-eEEeecccCCCCcceeEEecccCCCcCCCCCCcccccccCCcCCccCCCCCCCCCCCCCcCcCcc
Confidence 56799999999976 999999999999999999999999987 499999999999 66773 579999999
Q ss_pred eeeCCCccEEEEEEecceec---CCcCceEEEEecCCCCC----------CCceEEEEEe
Q 027076 149 VVADEKGEAFFSGVKEMLRV---ADLIGRSIVVYGTEDKS----------DSGVTAAVIA 195 (228)
Q Consensus 149 i~~~~~G~~~~~~~~~~l~l---~~iiGRSiVIh~~~dd~----------g~r~aCgvI~ 195 (228)
|+++.||++++.++++.++| .++.|||||||+++||+ |.|+|||||.
T Consensus 120 L~v~~dG~a~~~v~~~~~~l~~l~~v~G~alvIHag~Dd~~~~P~p~G~aG~R~ACGVI~ 179 (179)
T COG2032 120 LFVNADGKATLPVLAPRLKLKGLLEVKGRALVIHAGGDDYSTQPEPLGGAGARVACGVIK 179 (179)
T ss_pred eEECCCCcEEEEEecccceeccccccCCeEEEEEcCCccccCCCccCCCCccceeeeeeC
Confidence 99999999999999999986 68999999999999986 7899999994
No 11
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=99.13 E-value=3.2e-10 Score=76.52 Aligned_cols=55 Identities=35% Similarity=0.666 Sum_probs=51.1
Q ss_pred CCCcChhHHHHHHHHHhCCCCeeEEEEecCCcEEEEEecC---ChhHHHHHHHhcCcc
Q 027076 2 VDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSS---PLKTMTEALEQTGRK 56 (228)
Q Consensus 2 ~Gm~C~~C~~~Iek~L~~~~GV~~v~vdl~~~~v~V~~~~---~~~~i~~aI~~aGy~ 56 (228)
.||+|++|+.+|+++|.+++||.++.+|+.++++.|.++. ++++|.++|+++||+
T Consensus 5 ~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~Gy~ 62 (62)
T PF00403_consen 5 PGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEKAGYE 62 (62)
T ss_dssp ESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHHTTSE
T ss_pred CCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHHhCcC
Confidence 3899999999999999999999999999999999999874 459999999999995
No 12
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.96 E-value=3.3e-09 Score=73.89 Aligned_cols=59 Identities=31% Similarity=0.542 Sum_probs=52.9
Q ss_pred CCCcChhHHHHHHHHHhCCCCeeEEEEecCCcEEEEEec---CChhHHHHHHHhcCccceee
Q 027076 2 VDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGS---SPLKTMTEALEQTGRKARLV 60 (228)
Q Consensus 2 ~Gm~C~~C~~~Iek~L~~~~GV~~v~vdl~~~~v~V~~~---~~~~~i~~aI~~aGy~~~~~ 60 (228)
.||+|.+|+.+|+++|.+++||.++++++..+.+.+.++ .+.++|.++++++||.+..+
T Consensus 9 ~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~aGy~~~~~ 70 (71)
T COG2608 9 EGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIEDAGYKVEEI 70 (71)
T ss_pred CCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHHcCCCeeec
Confidence 589999999999999999999999999999977777654 47899999999999987643
No 13
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.33 E-value=2.1e-06 Score=60.01 Aligned_cols=59 Identities=37% Similarity=0.700 Sum_probs=53.4
Q ss_pred CCCCcChhHHHHHHHHHhCCCCeeEEEEecCCcEEEEEecCChhHHHHHHHhcC-cccee
Q 027076 1 MVDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTG-RKARL 59 (228)
Q Consensus 1 ~~Gm~C~~C~~~Iek~L~~~~GV~~v~vdl~~~~v~V~~~~~~~~i~~aI~~aG-y~~~~ 59 (228)
++.|+|.+|..+|++.|+.++||.++.+|...+++++.+..++..+++.+.+.+ .....
T Consensus 10 kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~~~p~~vl~~l~k~~~k~~~~ 69 (73)
T KOG1603|consen 10 KVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGNVDPVKLLKKLKKTGGKRAEL 69 (73)
T ss_pred EECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEecCHHHHHHHHHhcCCCceEE
Confidence 368999999999999999999999999999999999998899999999999877 54443
No 14
>PRK10671 copA copper exporting ATPase; Provisional
Probab=97.47 E-value=0.00022 Score=71.09 Aligned_cols=58 Identities=22% Similarity=0.485 Sum_probs=50.9
Q ss_pred CCCcChhHHHHHHHHHhCCCCeeEEEEecCCcEEEEEecCChhHHHHHHHhcCccceeec
Q 027076 2 VDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLVG 61 (228)
Q Consensus 2 ~Gm~C~~C~~~Iek~L~~~~GV~~v~vdl~~~~v~V~~~~~~~~i~~aI~~aGy~~~~~~ 61 (228)
.||+|++|+.+|+++|++++||..+++++. +..+....+++.+.+++++.||+++...
T Consensus 10 ~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~~~~~~i~~~i~~~Gy~~~~~~ 67 (834)
T PRK10671 10 DGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGTASAEALIETIKQAGYDASVSH 67 (834)
T ss_pred CCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEecCCHHHHHHHHHhcCCcccccc
Confidence 589999999999999999999999999995 4555566788999999999999988653
No 15
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.41 E-value=0.00033 Score=68.43 Aligned_cols=57 Identities=25% Similarity=0.509 Sum_probs=51.4
Q ss_pred CCCcChhHHHHHHHHHhCCCCeeEEEEecCCcEEEEEecC---C-hhHHHHHHHhcCcccee
Q 027076 2 VDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSS---P-LKTMTEALEQTGRKARL 59 (228)
Q Consensus 2 ~Gm~C~~C~~~Iek~L~~~~GV~~v~vdl~~~~v~V~~~~---~-~~~i~~aI~~aGy~~~~ 59 (228)
.||+|..|+.+|| +|++++||.++.+|+.++++.+.++. + ++++...++..||....
T Consensus 9 ~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~~~gy~~~~ 69 (713)
T COG2217 9 EGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVEKAGYSARL 69 (713)
T ss_pred cCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHHhcCccccc
Confidence 5999999999999 99999999999999999999998652 3 67899999999997754
No 16
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.15 E-value=0.001 Score=65.51 Aligned_cols=64 Identities=20% Similarity=0.442 Sum_probs=57.6
Q ss_pred CCCcChhHHHHHHHHHhCCCCeeEEEEecCCcEEEEEec--CChhHHHHHHHhcCccceeeccCCC
Q 027076 2 VDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGS--SPLKTMTEALEQTGRKARLVGQGVP 65 (228)
Q Consensus 2 ~Gm~C~~C~~~Iek~L~~~~GV~~v~vdl~~~~v~V~~~--~~~~~i~~aI~~aGy~~~~~~~~~~ 65 (228)
.||+|..|++.+++++...+|+.+..+++..+...+.++ .+++.+.++|++.||++.......+
T Consensus 1 ~gmtc~ac~~si~~~~~~~~g~~~i~vsl~~~~~~v~~~~~~~~~~i~~~ied~gf~~~~~~~~~~ 66 (951)
T KOG0207|consen 1 KGMTCSACSNSIEKAISRKPGVQKIEVSLAQKRANVSYDNIVSPESIKETIEDMGFEASLLSDSEI 66 (951)
T ss_pred CCccHHHHhhhHHHHHhcCCCceeEEEEeccccceEEEeeccCHHHHHHHhhcccceeeecccCcc
Confidence 489999999999999999999999999999999998876 4789999999999999987765443
No 17
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=96.62 E-value=0.016 Score=36.30 Aligned_cols=56 Identities=25% Similarity=0.479 Sum_probs=45.9
Q ss_pred CCCcChhHHHHHHHHHhCCCCeeEEEEecCCcEEEEEec---CChhHHHHHHHhcCccc
Q 027076 2 VDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGS---SPLKTMTEALEQTGRKA 57 (228)
Q Consensus 2 ~Gm~C~~C~~~Iek~L~~~~GV~~v~vdl~~~~v~V~~~---~~~~~i~~aI~~aGy~~ 57 (228)
.||.|..|...+++.++..+++....+++...++.+.++ .....+...+...||.+
T Consensus 9 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 67 (68)
T TIGR00003 9 MSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAILDAGYEV 67 (68)
T ss_pred CCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHHHcCCCc
Confidence 478999999999999999999999999999998888764 24556666677777753
No 18
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=96.37 E-value=0.0081 Score=59.43 Aligned_cols=60 Identities=25% Similarity=0.490 Sum_probs=54.8
Q ss_pred CCCcChhHHHHHHHHHhCCCCeeEEEEecCCcEEEEEec---CChhHHHHHHHhcCccceeec
Q 027076 2 VDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGS---SPLKTMTEALEQTGRKARLVG 61 (228)
Q Consensus 2 ~Gm~C~~C~~~Iek~L~~~~GV~~v~vdl~~~~v~V~~~---~~~~~i~~aI~~aGy~~~~~~ 61 (228)
.||.|.+|+.+|++.|.+++||.++++++.+.++.|.++ ..+.++.+.|+..||......
T Consensus 153 ~g~~c~s~~~~ie~~l~~l~gV~~~sv~~~t~~~~V~~~~~~~~pr~i~k~ie~~~~~~~~~~ 215 (951)
T KOG0207|consen 153 LGMTCASCVSKIESILERLRGVKSFSVSLATDTAIVVYDPEITGPRDIIKAIEETGFEASVRP 215 (951)
T ss_pred ecccccchhhhhHHHHhhccCeeEEEEeccCCceEEEecccccChHHHHHHHHhhcccceeee
Confidence 589999999999999999999999999999999998876 478999999999999876554
No 19
>PRK10671 copA copper exporting ATPase; Provisional
Probab=95.54 E-value=0.032 Score=55.83 Aligned_cols=58 Identities=31% Similarity=0.601 Sum_probs=51.2
Q ss_pred CCCcChhHHHHHHHHHhCCCCeeEEEEecCCcEEEEEecCChhHHHHHHHhcCcccee
Q 027076 2 VDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARL 59 (228)
Q Consensus 2 ~Gm~C~~C~~~Iek~L~~~~GV~~v~vdl~~~~v~V~~~~~~~~i~~aI~~aGy~~~~ 59 (228)
.||+|..|+..+++.+.+++|+..+.+++...+..+....+++++.+.+++.||.+.+
T Consensus 106 ~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~~~s~~~I~~~I~~~Gy~a~~ 163 (834)
T PRK10671 106 SGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAVEKAGYGAEA 163 (834)
T ss_pred CCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEccCCHHHHHHHHHhcCCCccc
Confidence 5899999999999999999999999999999988876555677888889999998654
No 20
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=94.85 E-value=0.076 Score=52.58 Aligned_cols=59 Identities=19% Similarity=0.356 Sum_probs=49.3
Q ss_pred CCCcChhHHHHHHHHHhCCCCeeEEEEecCCcEEEEEecC-ChhHHHHHHHhcCccceee
Q 027076 2 VDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSS-PLKTMTEALEQTGRKARLV 60 (228)
Q Consensus 2 ~Gm~C~~C~~~Iek~L~~~~GV~~v~vdl~~~~v~V~~~~-~~~~i~~aI~~aGy~~~~~ 60 (228)
.||+|++|+..+++.+.+.+||..+.+++.++++.+.++. ..+++.+.+++.||++...
T Consensus 60 ~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~~~~I~~aI~~~Gy~a~~~ 119 (741)
T PRK11033 60 SGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESAVQKAGFSLRDE 119 (741)
T ss_pred CCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccchHHHHHHHHhcccccccc
Confidence 5899999999999999999999999999999998877542 2256777888899987543
No 21
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=85.86 E-value=7.1 Score=26.42 Aligned_cols=58 Identities=29% Similarity=0.458 Sum_probs=41.8
Q ss_pred CCCcChhHHHHHHHHHhCCCCeeEEEEecCCcEEEEEec---CChhHHHHHHHhcCcccee
Q 027076 2 VDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGS---SPLKTMTEALEQTGRKARL 59 (228)
Q Consensus 2 ~Gm~C~~C~~~Iek~L~~~~GV~~v~vdl~~~~v~V~~~---~~~~~i~~aI~~aGy~~~~ 59 (228)
.++.|..|...++..+...+++.....++......+... .....+...+...||..++
T Consensus 30 ~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 90 (92)
T TIGR02052 30 PGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATTDAGYPSSL 90 (92)
T ss_pred CCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCCCeEe
Confidence 367899999999999999999888888888777655532 2344454555667776443
No 22
>PRK13748 putative mercuric reductase; Provisional
Probab=70.62 E-value=18 Score=34.33 Aligned_cols=61 Identities=25% Similarity=0.464 Sum_probs=45.0
Q ss_pred CCCcChhHHHHHHHHHhCCCCeeEEEEecCCcEEEEEec--CChhHHHHHHHhcCccceeecc
Q 027076 2 VDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGS--SPLKTMTEALEQTGRKARLVGQ 62 (228)
Q Consensus 2 ~Gm~C~~C~~~Iek~L~~~~GV~~v~vdl~~~~v~V~~~--~~~~~i~~aI~~aGy~~~~~~~ 62 (228)
.+|.|..|...++..+...+++....+++......+... .....+...++..+|..++...
T Consensus 7 ~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~~~~~~~i~~~i~~~g~~~~~~~~ 69 (561)
T PRK13748 7 TGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVGTSPDALTAAVAGLGYRATLADA 69 (561)
T ss_pred CCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECCCCCHHHHHHHHHHcCCeeeccCc
Confidence 478999999999999999999988888888887666542 2344555556667776544433
No 23
>PF07452 CHRD: CHRD domain; InterPro: IPR010895 CHRD (after SWISS-PROT abbreviation for chordin) is a novel domain identified in chordin, an inhibitor of bone morphogenetic proteins. This family includes bacterial homologues. It is anticipated to have an immunoglobulin-like beta-barrel structure based on limited similarity to superoxide dismutases but, as yet, no clear functional prediction can be made [].
Probab=69.14 E-value=16 Score=27.05 Aligned_cols=36 Identities=17% Similarity=0.143 Sum_probs=29.8
Q ss_pred ceEEEEEEEEeCCC-cEEEEEEECCCCCCceeeEEec
Q 027076 81 DVFGVVRLAQVNME-LARIEANFSGLSPGKHGWSINE 116 (228)
Q Consensus 81 ~v~G~i~f~q~~~~-~v~v~~~i~Gl~~g~h~~hIH~ 116 (228)
.-.|++.|+-..++ .+.+++.++||....-.+|||.
T Consensus 19 ~a~G~a~~~l~~~~~~l~y~i~~~gl~~~~~~~hih~ 55 (119)
T PF07452_consen 19 SASGTAWFTLDDDGNTLHYSITLSGLSSPPTAAHIHQ 55 (119)
T ss_pred CCEEEEEEEEECCCCEEEEEEEEeCCCCCcEEEEEEc
Confidence 35689988887765 6888999999977779999998
No 24
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
Probab=68.65 E-value=17 Score=19.84 Aligned_cols=38 Identities=34% Similarity=0.651 Sum_probs=29.6
Q ss_pred CCCcChhHHHHHHHHHhCCCCeeEEEEecCCcEEEEEe
Q 027076 2 VDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILG 39 (228)
Q Consensus 2 ~Gm~C~~C~~~Iek~L~~~~GV~~v~vdl~~~~v~V~~ 39 (228)
.++.|..|...++..+...+++.....++......+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (63)
T cd00371 5 EGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEY 42 (63)
T ss_pred CCeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEEE
Confidence 46789999999998888888887777777766655543
No 25
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=67.40 E-value=22 Score=23.75 Aligned_cols=51 Identities=16% Similarity=0.243 Sum_probs=36.8
Q ss_pred CCCcChhHHHHHHHHHhCCCCeeEEEEecCCcEEEEEec--CChhHHHHHHHhcCccceeec
Q 027076 2 VDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGS--SPLKTMTEALEQTGRKARLVG 61 (228)
Q Consensus 2 ~Gm~C~~C~~~Iek~L~~~~GV~~v~vdl~~~~v~V~~~--~~~~~i~~aI~~aGy~~~~~~ 61 (228)
.|+.|+.....+.++|.+++. .+.+.|..+ .....+...++..||......
T Consensus 6 rg~~CP~Pll~~~~~l~~l~~---------G~~l~v~~d~~~~~~di~~~~~~~g~~~~~~~ 58 (70)
T PF01206_consen 6 RGLSCPMPLLKAKKALKELPP---------GEVLEVLVDDPAAVEDIPRWCEENGYEVVEVE 58 (70)
T ss_dssp SS-STTHHHHHHHHHHHTSGT---------T-EEEEEESSTTHHHHHHHHHHHHTEEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHhcCC---------CCEEEEEECCccHHHHHHHHHHHCCCEEEEEE
Confidence 588999999999999998732 234555544 345789999999999865543
No 26
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=62.51 E-value=28 Score=25.46 Aligned_cols=50 Identities=20% Similarity=0.411 Sum_probs=35.4
Q ss_pred HHHHHHhCCCCeeEEEEec-----CCcEEE--EEec-CChhHHHHHHHhcCccceeec
Q 027076 12 AVKQKLQTVTGVKNVEVDL-----SNQVVR--ILGS-SPLKTMTEALEQTGRKARLVG 61 (228)
Q Consensus 12 ~Iek~L~~~~GV~~v~vdl-----~~~~v~--V~~~-~~~~~i~~aI~~aGy~~~~~~ 61 (228)
.+.+.|.+++||..+++.+ .+..+. ++++ ++.+++.++|++.|-.++...
T Consensus 21 e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie~~Gg~IHSID 78 (95)
T PF02680_consen 21 ELAKALSELEGVDGVNITVVEVDVETENLKITIEGDDIDFDEIKEAIEELGGVIHSID 78 (95)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHHHcCCeEEeee
Confidence 4567899999998877544 444444 4444 789999999999998877664
No 27
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=60.14 E-value=33 Score=24.95 Aligned_cols=50 Identities=18% Similarity=0.379 Sum_probs=35.1
Q ss_pred HHHHHHhCCCCeeEEEEec-----CCc--EEEEEe-cCChhHHHHHHHhcCccceeec
Q 027076 12 AVKQKLQTVTGVKNVEVDL-----SNQ--VVRILG-SSPLKTMTEALEQTGRKARLVG 61 (228)
Q Consensus 12 ~Iek~L~~~~GV~~v~vdl-----~~~--~v~V~~-~~~~~~i~~aI~~aGy~~~~~~ 61 (228)
.+.+.|.+++||..+++.+ .+. ++++++ +++.+++.+.|++.|-..+...
T Consensus 23 e~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE~~Gg~IHSiD 80 (97)
T COG1888 23 ELALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIEELGGAIHSID 80 (97)
T ss_pred HHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHHHcCCeeeehh
Confidence 3456788888887766443 333 344554 4788999999999998877664
No 28
>smart00754 CHRD A domain in the BMP inhibitor chordin and in microbial proteins.
Probab=60.10 E-value=34 Score=25.47 Aligned_cols=36 Identities=19% Similarity=0.166 Sum_probs=28.3
Q ss_pred ceEEEEEEEEeCCCcEEEEEEECCCCCCceeeEEec
Q 027076 81 DVFGVVRLAQVNMELARIEANFSGLSPGKHGWSINE 116 (228)
Q Consensus 81 ~v~G~i~f~q~~~~~v~v~~~i~Gl~~g~h~~hIH~ 116 (228)
...|.+.|+-..++.+...+.++||..-.-..|||+
T Consensus 19 ~a~G~a~~~l~~~~~l~y~i~~~gl~~~~~~~hih~ 54 (118)
T smart00754 19 GAVGGAWFTLDDDGSLHYQVTLSGLSGPETAAHIHE 54 (118)
T ss_pred CcEEEEEEEECCCCEEEEEEEEcccCCCceeeeEec
Confidence 456888888775567888899999986434899998
No 29
>PRK11018 hypothetical protein; Provisional
Probab=41.15 E-value=1.2e+02 Score=20.93 Aligned_cols=50 Identities=10% Similarity=0.183 Sum_probs=36.7
Q ss_pred CCCcChhHHHHHHHHHhCCCCeeEEEEecCCcEEEEEec--CChhHHHHHHHhcCccceee
Q 027076 2 VDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGS--SPLKTMTEALEQTGRKARLV 60 (228)
Q Consensus 2 ~Gm~C~~C~~~Iek~L~~~~GV~~v~vdl~~~~v~V~~~--~~~~~i~~aI~~aGy~~~~~ 60 (228)
.|+.|+.=..+.+++|++++. .+.+.|..+ .....+....+..||++...
T Consensus 14 rG~~CP~Pvl~~kk~l~~l~~---------G~~L~V~~d~~~a~~di~~~~~~~G~~v~~~ 65 (78)
T PRK11018 14 VGEPCPYPAVATLEALPQLKK---------GEILEVVSDCPQSINNIPLDARNHGYTVLDI 65 (78)
T ss_pred CCCcCCHHHHHHHHHHHhCCC---------CCEEEEEeCCccHHHHHHHHHHHcCCEEEEE
Confidence 588999999999999998742 223444433 35568888999999987644
No 30
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=40.09 E-value=1.1e+02 Score=20.13 Aligned_cols=50 Identities=14% Similarity=0.201 Sum_probs=34.8
Q ss_pred CCCcChhHHHHHHHHHhCCCCeeEEEEecCCcEEEEEec--CChhHHHHHHHhcCccceeec
Q 027076 2 VDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGS--SPLKTMTEALEQTGRKARLVG 61 (228)
Q Consensus 2 ~Gm~C~~C~~~Iek~L~~~~GV~~v~vdl~~~~v~V~~~--~~~~~i~~aI~~aGy~~~~~~ 61 (228)
.|+.|+.=...++++| ++.. .+.+.|..+ ...+.+....++.||......
T Consensus 5 rG~~CP~P~l~~k~al-~~~~---------g~~l~v~~d~~~s~~~i~~~~~~~G~~~~~~~ 56 (67)
T cd03421 5 RGLACPQPVIKTKKAL-ELEA---------GGEIEVLVDNEVAKENVSRFAESRGYEVSVEE 56 (67)
T ss_pred CCCCCCHHHHHHHHHH-hcCC---------CCEEEEEEcChhHHHHHHHHHHHcCCEEEEEe
Confidence 4889999999999999 5422 223444433 345688889999999985443
No 31
>PF13732 DUF4162: Domain of unknown function (DUF4162)
Probab=34.82 E-value=1.5e+02 Score=20.15 Aligned_cols=48 Identities=21% Similarity=0.327 Sum_probs=31.4
Q ss_pred HhCCCCeeEEEEecCC-cEEEEEecCChhHHHHHHHhcCccceeeccCCC
Q 027076 17 LQTVTGVKNVEVDLSN-QVVRILGSSPLKTMTEALEQTGRKARLVGQGVP 65 (228)
Q Consensus 17 L~~~~GV~~v~vdl~~-~~v~V~~~~~~~~i~~aI~~aGy~~~~~~~~~~ 65 (228)
|..+++|..+...-.. -.+.+.......+++..+.+.|+ +.......|
T Consensus 26 l~~~~~v~~v~~~~~~~~~i~l~~~~~~~~ll~~l~~~g~-I~~f~~~~P 74 (84)
T PF13732_consen 26 LEELPGVESVEQDGDGKLRIKLEDEETANELLQELIEKGI-IRSFEEEEP 74 (84)
T ss_pred HhhCCCeEEEEEeCCcEEEEEECCcccHHHHHHHHHhCCC-eeEEEEcCC
Confidence 7778999988764332 23344444567789999999898 765544333
No 32
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=33.34 E-value=95 Score=25.19 Aligned_cols=46 Identities=22% Similarity=0.302 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHhCCCCeeEEEEecCCcE-------------------EEEEec---CChhHHHHHHHh
Q 027076 7 EGCVDAVKQKLQTVTGVKNVEVDLSNQV-------------------VRILGS---SPLKTMTEALEQ 52 (228)
Q Consensus 7 ~~C~~~Iek~L~~~~GV~~v~vdl~~~~-------------------v~V~~~---~~~~~i~~aI~~ 52 (228)
.+|-.-+|..+.+++||.++.+-++.+. |.|.++ ++.++|++..=+
T Consensus 10 gGCFWg~E~~f~~~~GV~~t~vGYagG~~~~PtY~~Vcsg~tgh~E~V~V~yDp~~isy~~Ll~~f~~ 77 (172)
T PRK14054 10 GGCFWGMEAPFDRVKGVISTRVGYTGGHVENPTYEQVCSGTTGHAEAVEITYDPAVISYRELLELFFQ 77 (172)
T ss_pred cCChhhhHHHHccCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCCcCCHHHHHHHHHH
Confidence 5788999999999999999998887654 556665 356667665533
No 33
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=26.39 E-value=55 Score=24.58 Aligned_cols=20 Identities=10% Similarity=0.152 Sum_probs=14.7
Q ss_pred EEEEEECCCCCCceeeEEec
Q 027076 97 RIEANFSGLSPGKHGWSINE 116 (228)
Q Consensus 97 ~v~~~i~Gl~~g~h~~hIH~ 116 (228)
.+++.+.+.....|.||+|-
T Consensus 43 ~v~~~l~N~~~~~Hp~HlHG 62 (138)
T PF07731_consen 43 VVEIVLQNNGSMPHPFHLHG 62 (138)
T ss_dssp EEEEEEEECTTSSEEEEETT
T ss_pred EEEEEEECCCCCccceEEEe
Confidence 56666666666689999994
No 34
>PRK00058 methionine sulfoxide reductase A; Provisional
Probab=25.36 E-value=1.5e+02 Score=25.04 Aligned_cols=45 Identities=18% Similarity=0.297 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHhCCCCeeEEEEecCCc-------------------EEEEEec---CChhHHHHHHH
Q 027076 7 EGCVDAVKQKLQTVTGVKNVEVDLSNQ-------------------VVRILGS---SPLKTMTEALE 51 (228)
Q Consensus 7 ~~C~~~Iek~L~~~~GV~~v~vdl~~~-------------------~v~V~~~---~~~~~i~~aI~ 51 (228)
.+|-.-+|..+.+++||.++.+-++.+ .|.|.++ ++.++|++..=
T Consensus 52 gGCFWg~E~~F~~l~GV~~t~vGYagG~~~~PtY~~VcsG~tgH~EaV~V~YDp~~ISy~~LL~~Ff 118 (213)
T PRK00058 52 MGCFWGAERLFWQLPGVYSTAVGYAGGYTPNPTYREVCSGRTGHAEVVRVVYDPAVISYEQLLQVFW 118 (213)
T ss_pred ccCcchhHHHHhcCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHHHH
Confidence 468899999999999999999988733 3556665 36677776653
No 35
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=24.28 E-value=2.2e+02 Score=18.90 Aligned_cols=50 Identities=10% Similarity=0.194 Sum_probs=36.4
Q ss_pred CCCcChhHHHHHHHHHhCCCCeeEEEEecCCcEEEEEec--CChhHHHHHHHhcCccceee
Q 027076 2 VDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGS--SPLKTMTEALEQTGRKARLV 60 (228)
Q Consensus 2 ~Gm~C~~C~~~Iek~L~~~~GV~~v~vdl~~~~v~V~~~--~~~~~i~~aI~~aGy~~~~~ 60 (228)
.|+.|+.=..+.+++|++++. .+.+.|..+ .+.+.+....+..||.+...
T Consensus 5 rG~~CP~Pvi~~kkal~~l~~---------G~~l~V~~d~~~s~~ni~~~~~~~g~~v~~~ 56 (69)
T cd03422 5 RGEPCPYPAIATLEALPSLKP---------GEILEVISDCPQSINNIPIDARNHGYKVLAI 56 (69)
T ss_pred CCCcCCHHHHHHHHHHHcCCC---------CCEEEEEecCchHHHHHHHHHHHcCCEEEEE
Confidence 478899988999999998742 223444433 45678888999999988654
No 36
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=22.54 E-value=2.4e+02 Score=18.68 Aligned_cols=51 Identities=12% Similarity=0.237 Sum_probs=37.3
Q ss_pred CCCcChhHHHHHHHHHhCCCCeeEEEEecCCcEEEEEec--CChhHHHHHHHhcCccceeec
Q 027076 2 VDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGS--SPLKTMTEALEQTGRKARLVG 61 (228)
Q Consensus 2 ~Gm~C~~C~~~Iek~L~~~~GV~~v~vdl~~~~v~V~~~--~~~~~i~~aI~~aGy~~~~~~ 61 (228)
.|+.|+.=....+++|.+++. .+.+.|..+ .....+....+..||+.....
T Consensus 5 rG~~CP~Pvl~~kkal~~l~~---------G~~l~V~~d~~~a~~di~~~~~~~G~~~~~~~ 57 (69)
T cd03420 5 CGLQCPGPILKLKKEIDKLQD---------GEQLEVKASDPGFARDAQAWCKSTGNTLISLE 57 (69)
T ss_pred CCCcCCHHHHHHHHHHHcCCC---------CCEEEEEECCccHHHHHHHHHHHcCCEEEEEE
Confidence 588999989999999998742 233444433 356788899999999877544
No 37
>PF11088 RL11D: Glycoprotein encoding membrane proteins RL5A and RL6; InterPro: IPR024349 This entry represents RL5A and RL6 from human herpesvirus 5. RL5A and RL6 are members of the RL11 family, which are predicted to encode membrane glycoproteins [].
Probab=22.28 E-value=1.6e+02 Score=21.51 Aligned_cols=30 Identities=10% Similarity=0.093 Sum_probs=20.9
Q ss_pred CCceEEEEEeecccCCcCCCe--EEccCCccc
Q 027076 186 DSGVTAAVIARSAGVGENYKK--ICACDGTII 215 (228)
Q Consensus 186 g~r~aCgvI~rsag~~~n~k~--~c~c~g~~~ 215 (228)
+....|-|-.+-...--+.-. ||+|+-..|
T Consensus 31 gd~~lCnVtg~~~~~vn~~~t~cVsnCsHtsL 62 (98)
T PF11088_consen 31 GDTWLCNVTGNGNYTVNTNGTVCVSNCSHTSL 62 (98)
T ss_pred CcEEEEEEecCCceEecCCCcEEEecccCCcE
Confidence 456889888877776666555 788865443
No 38
>PRK05528 methionine sulfoxide reductase A; Provisional
Probab=21.43 E-value=2.4e+02 Score=22.44 Aligned_cols=46 Identities=22% Similarity=0.281 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHhCCCCeeEEEEecCCcE--------------EEEEec---CChhHHHHHHHh
Q 027076 7 EGCVDAVKQKLQTVTGVKNVEVDLSNQV--------------VRILGS---SPLKTMTEALEQ 52 (228)
Q Consensus 7 ~~C~~~Iek~L~~~~GV~~v~vdl~~~~--------------v~V~~~---~~~~~i~~aI~~ 52 (228)
.+|-.-+|..+.+++||.++.+-++.+. |.|.++ ++.++|++..=.
T Consensus 8 gGCFWg~E~~f~~l~GV~~t~vGYagG~~~~p~~~~tgH~E~V~V~yDp~~isy~~LL~~f~~ 70 (156)
T PRK05528 8 GGCLWGVQAFFKTLPGVIHTEAGRANGRTSTLDGPYDGYAECVKTHFDPRMVSITDLMGYLFE 70 (156)
T ss_pred cCCchhhHHHHhcCCCEEEEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCcCCHHHHHHHHHH
Confidence 4788899999999999999998776532 445555 356667665533
No 39
>COG4296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.85 E-value=1.5e+02 Score=23.21 Aligned_cols=34 Identities=29% Similarity=0.306 Sum_probs=28.2
Q ss_pred CcceeeCCCccEEEEEEecceecCCcCceEEEEecCCC
Q 027076 146 LGTVVADEKGEAFFSGVKEMLRVADLIGRSIVVYGTED 183 (228)
Q Consensus 146 Lgni~~~~~G~~~~~~~~~~l~l~~iiGRSiVIh~~~d 183 (228)
|-++....+|.+.+.|.|..| ..|++|.|.-+.+
T Consensus 113 Le~v~~~pdGe~efyy~DGdL----F~GH~Ilis~D~n 146 (156)
T COG4296 113 LENVMLYPDGEAEFYYSDGDL----FAGHVILISVDEN 146 (156)
T ss_pred hhceEeccCCcEEEEecCCCe----EeeeEEEEEEcCC
Confidence 678999999999999887755 5699999997654
No 40
>PF07477 Glyco_hydro_67C: Glycosyl hydrolase family 67 C-terminus; InterPro: IPR011099 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the C-terminal region of alpha-glucuronidase, which is mainly alpha-helical. It wraps around the catalytic domain (IPR011100 from INTERPRO), making additional interactions both with the N-terminal domain (IPR005154 from INTERPRO) of its parent monomer and also forming the majority of the dimer-surface with the equivalent C-terminal domain of the other monomer of the dimer [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1GQL_A 1GQI_B 1GQJ_B 1GQK_A 1H41_A 1MQR_A 1K9F_A 1K9E_A 1L8N_A 1K9D_A ....
Probab=20.75 E-value=30 Score=29.30 Aligned_cols=8 Identities=25% Similarity=1.062 Sum_probs=4.2
Q ss_pred CCcccccc
Q 027076 211 DGTIIWES 218 (228)
Q Consensus 211 ~g~~~w~~ 218 (228)
||||||||
T Consensus 147 sG~Tl~q~ 154 (225)
T PF07477_consen 147 SGKTLWQE 154 (225)
T ss_dssp TS-BHHHH
T ss_pred CcchHHHH
Confidence 56666664
No 41
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=20.14 E-value=1.7e+02 Score=20.96 Aligned_cols=51 Identities=12% Similarity=-0.038 Sum_probs=27.6
Q ss_pred HHHHHHHHhCCCCeeEEEEecCCcEEEEEec---CChhHHHHHHHhcCccceee
Q 027076 10 VDAVKQKLQTVTGVKNVEVDLSNQVVRILGS---SPLKTMTEALEQTGRKARLV 60 (228)
Q Consensus 10 ~~~Iek~L~~~~GV~~v~vdl~~~~v~V~~~---~~~~~i~~aI~~aGy~~~~~ 60 (228)
+..++=.|++.++|-++-+|.-+....|.++ .+.+++++.++...+.+...
T Consensus 13 A~~~QYeLsk~~~vyRvFiNgYar~g~VifDe~kl~~e~lL~~le~~kpEVi~e 66 (88)
T PF11491_consen 13 AMVKQYELSKNEAVYRVFINGYARNGFVIFDESKLSKEELLEMLEEFKPEVIEE 66 (88)
T ss_dssp THHHHHTTTTTTTB------TTSS--EEE--B-S-SHHHH---HHHTTT-SS--
T ss_pred HHHHHHHhhcccceeeeeecccccceEEEECcccCCHHHHHHHHHhcChhheee
Confidence 4556667889999999999999888888765 57889999999988876543
Done!