BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027077
(228 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9STY0|PX11B_ARATH Peroxisomal membrane protein 11B OS=Arabidopsis thaliana GN=PEX11B
PE=1 SV=1
Length = 227
Score = 328 bits (842), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 165/228 (72%), Positives = 192/228 (84%), Gaps = 1/228 (0%)
Query: 1 MSNDTVDKLVIFLAKRDGIDKLVKTFQYVSKLVHWHVEATKPELAQRFKQWEVASGLSRK 60
MS DTVDKLV+FLAKRDGIDKLVKTFQYV+KL WHVEAT+PE A RFK+WEVASGLSRK
Sbjct: 1 MSLDTVDKLVVFLAKRDGIDKLVKTFQYVAKLACWHVEATRPEAADRFKKWEVASGLSRK 60
Query: 61 AFRTGRFLTGFNLLRRNPGATPTLRLLAVLANAGEMVYWSFDHLLWLSRIGTLDAKFARR 120
AFRTGR LTGFN LRRNPGATP +R LAVLAN+GEMVY+ FDH LWLSRIG++DAK A++
Sbjct: 61 AFRTGRSLTGFNALRRNPGATPMIRFLAVLANSGEMVYFFFDHFLWLSRIGSIDAKLAKK 120
Query: 121 LSFISAFGESFGYVFFIIADFILMKQGLAKERQLVAPDHEEKSKDVEESLRKIKVDRVMR 180
+SFISAFGESFGY FFII D I +KQ L ++L E K +++ + +I+ D VMR
Sbjct: 121 MSFISAFGESFGYTFFIIIDCIFIKQRLKSLKKLQHSTDEPK-EEIGAKISEIRGDIVMR 179
Query: 181 LMAVAANVADLIIALADIEPNPFCNHVVTLGISGLVSAWSGWYRNWPS 228
LM ++ANVADL+IALA+I PNPFCNH +TLGISGLVSAW+GWYRNWPS
Sbjct: 180 LMGISANVADLLIALAEIHPNPFCNHTITLGISGLVSAWAGWYRNWPS 227
>sp|Q7XU74|PX114_ORYSJ Peroxisomal membrane protein 11-4 OS=Oryza sativa subsp. japonica
GN=PEX11-4 PE=2 SV=2
Length = 222
Score = 325 bits (833), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 158/227 (69%), Positives = 184/227 (81%), Gaps = 7/227 (3%)
Query: 2 SNDTVDKLVIFLAKRDGIDKLVKTFQYVSKLVHWHVEATKPELAQRFKQWEVASGLSRKA 61
+ DT+DKLV+FLAKRDGIDKLVKTFQYVSKL HW E++ P LA R K WE ++GLSRKA
Sbjct: 3 AGDTLDKLVVFLAKRDGIDKLVKTFQYVSKLAHWAAESSSPGLAGRAKNWETSAGLSRKA 62
Query: 62 FRTGRFLTGFNLLRRNPGATPTLRLLAVLANAGEMVYWSFDHLLWLSRIGTLDAKFARRL 121
FRTGRFLTG N LRR PG LAVLANAGEMVY+ FDH WLSR+G LDA ARR+
Sbjct: 63 FRTGRFLTGLNGLRRAPG---EFGALAVLANAGEMVYFFFDHFTWLSRVGVLDAWLARRM 119
Query: 122 SFISAFGESFGYVFFIIADFILMKQGLAKERQLVAPDHEEKSKDVEESLRKIKVDRVMRL 181
SFISAFGES GYVFFI D I++++GL +ER+L+ E KD ++ ++KI++DRVMRL
Sbjct: 120 SFISAFGESVGYVFFIAMDLIMIRRGLRQERKLL----REGGKDKDKEVKKIRMDRVMRL 175
Query: 182 MAVAANVADLIIALADIEPNPFCNHVVTLGISGLVSAWSGWYRNWPS 228
MA AANVADL+I +ADIEPNPFCNH VTLGISGLVSAW+GWYRNWPS
Sbjct: 176 MATAANVADLVIGIADIEPNPFCNHAVTLGISGLVSAWAGWYRNWPS 222
>sp|Q01IH3|PX114_ORYSI Peroxisomal membrane protein 11-4 OS=Oryza sativa subsp. indica
GN=PEX11-4 PE=2 SV=1
Length = 222
Score = 325 bits (833), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 158/227 (69%), Positives = 184/227 (81%), Gaps = 7/227 (3%)
Query: 2 SNDTVDKLVIFLAKRDGIDKLVKTFQYVSKLVHWHVEATKPELAQRFKQWEVASGLSRKA 61
+ DT+DKLV+FLAKRDGIDKLVKTFQYVSKL HW E++ P LA R K WE ++GLSRKA
Sbjct: 3 AGDTLDKLVVFLAKRDGIDKLVKTFQYVSKLAHWAAESSSPGLAGRAKNWETSAGLSRKA 62
Query: 62 FRTGRFLTGFNLLRRNPGATPTLRLLAVLANAGEMVYWSFDHLLWLSRIGTLDAKFARRL 121
FRTGRFLTG N LRR PG LAVLANAGEMVY+ FDH WLSR+G LDA ARR+
Sbjct: 63 FRTGRFLTGLNGLRRAPG---EFGALAVLANAGEMVYFFFDHFTWLSRVGVLDAWLARRM 119
Query: 122 SFISAFGESFGYVFFIIADFILMKQGLAKERQLVAPDHEEKSKDVEESLRKIKVDRVMRL 181
SFISAFGES GYVFFI D I++++GL +ER+L+ E KD ++ ++KI++DRVMRL
Sbjct: 120 SFISAFGESVGYVFFIAMDLIMIRRGLRQERKLL----REGGKDKDKEVKKIRMDRVMRL 175
Query: 182 MAVAANVADLIIALADIEPNPFCNHVVTLGISGLVSAWSGWYRNWPS 228
MA AANVADL+I +ADIEPNPFCNH VTLGISGLVSAW+GWYRNWPS
Sbjct: 176 MATAANVADLVIGIADIEPNPFCNHAVTLGISGLVSAWAGWYRNWPS 222
>sp|Q10MN2|PX113_ORYSJ Peroxisomal membrane protein 11-3 OS=Oryza sativa subsp. japonica
GN=PEX11-3 PE=2 SV=1
Length = 242
Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 113/218 (51%), Gaps = 9/218 (4%)
Query: 12 FLAKRDGIDKLVKTFQYVSKLVHWHVEATKPELAQRFKQWEVASGLSRKAFRTGRFLTGF 71
+L++RDG+DKL+K + + P + R K +E + GLSRKAFR G+F+
Sbjct: 32 YLSRRDGVDKLLK-ISRYAARLALAAGPLPPAASARLKSFESSVGLSRKAFRLGKFVQNV 90
Query: 72 NLLRRNPGATPTLRLLAVLANAGEMVYWSFDHLLWLSRIGTLDAKFARRLSFISAFGESF 131
N LR +P P +A+LA GE VY+ + +WL++ G L A RL +SA+ E
Sbjct: 91 NALRAHPHPPPA---VALLAYGGEGVYYFLEQFVWLAKAGLLPAHLLPRLQRLSAWAELL 147
Query: 132 GYVFFIIADFILMKQGLAKERQLVAPDHEEKSKDVEESLRKIKVDRVMRLMAVAANVADL 191
GYV I + + K V +E ++ + +R ++V +++ M+V +VAD
Sbjct: 148 GYVGSITIKL----EEIGKLESSVKMRLKEGCREESDVVRTLRVKLLLKRMSVVQDVADA 203
Query: 192 IIALADI-EPNPFCNHVVTLGISGLVSAWSGWYRNWPS 228
++AL D+ + + +GL+SA ++NW S
Sbjct: 204 VMALGDVTDGKGLLGSSTLMASAGLLSALISAHKNWNS 241
>sp|A2XFQ8|PX113_ORYSI Peroxisomal membrane protein 11-3 OS=Oryza sativa subsp. indica
GN=PEX11-3 PE=2 SV=1
Length = 242
Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 113/218 (51%), Gaps = 9/218 (4%)
Query: 12 FLAKRDGIDKLVKTFQYVSKLVHWHVEATKPELAQRFKQWEVASGLSRKAFRTGRFLTGF 71
+L++RDG+DKL+K + + P + R K +E + GLSRKAFR G+F+
Sbjct: 32 YLSRRDGVDKLLK-ISRYAARLALAAGPLPPAASARLKSFESSVGLSRKAFRLGKFVQNV 90
Query: 72 NLLRRNPGATPTLRLLAVLANAGEMVYWSFDHLLWLSRIGTLDAKFARRLSFISAFGESF 131
N LR +P P +A+LA GE VY+ + +WL++ G L A RL +SA+ E
Sbjct: 91 NALRAHPHPPPA---VALLAYGGEGVYYFLEQFVWLAKAGLLPAHLLPRLQRLSAWAELL 147
Query: 132 GYVFFIIADFILMKQGLAKERQLVAPDHEEKSKDVEESLRKIKVDRVMRLMAVAANVADL 191
GYV I + + K V +E ++ + +R ++V +++ M+V +VAD
Sbjct: 148 GYVGSITIKL----EEIGKLESSVKMRLKEGCREESDVVRTLRVKLLLKRMSVVQDVADA 203
Query: 192 IIALADI-EPNPFCNHVVTLGISGLVSAWSGWYRNWPS 228
++AL D+ + + +GL+SA ++NW S
Sbjct: 204 VMALGDVTDGKGLLGSSTLMASAGLLSALISAHKNWNS 241
>sp|Q9FZF1|PX11A_ARATH Peroxisomal membrane protein 11A OS=Arabidopsis thaliana GN=PEX11A
PE=1 SV=1
Length = 248
Score = 90.9 bits (224), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 128/235 (54%), Gaps = 13/235 (5%)
Query: 4 DTVDKLVIFLAKRDGIDKLVKTFQYVSKLVHWHVEATKPE---LAQRFKQWEVASGLSRK 60
D ++ L +L+KRDG+DKL+K +Y +K++ + PE + R K +E + G+SRK
Sbjct: 16 DFLNHLETYLSKRDGVDKLLKISRYATKIIL--ASSLIPETRSIIPRLKSFESSVGVSRK 73
Query: 61 AFRTGRFLTGFNLLRRNPGATPTLRLLAVLANAGEMVYWSFDHLLWLSRIGTLDAKFARR 120
AFR G+F+ N LR + + +L ++A GE +Y+ + +WL++ G +DAK ++
Sbjct: 74 AFRLGKFVQDINALRSSRWDSNHELVLLIIAYGGEGLYYFVEQFIWLTKSGLIDAKHSKW 133
Query: 121 LSFISAFGESFGYVFFIIADFILMKQGLAKERQLVAPDHEEK-----SKDVEE-SLRKIK 174
L ISA+ E GYV + +++ L E VA E + D E+ ++ IK
Sbjct: 134 LQKISAWAELVGYVGSVSIKIRDLRK-LNDEESCVASTIEISVSRGLACDGEDEKMKMIK 192
Query: 175 VDRVMRLMAVAANVADLIIALADI-EPNPFCNHVVTLGISGLVSAWSGWYRNWPS 228
+ ++++++ ++AD ++ +ADI + + + +GL SA ++NW S
Sbjct: 193 EKKTLKVLSILQDLADGLMTIADIRDGKGVLSAPNVISSAGLFSAIVSTHKNWIS 247
>sp|Q54H86|PEX11_DICDI Peroxisomal membrane protein 11 homolog OS=Dictyostelium discoideum
GN=pex11 PE=3 SV=1
Length = 254
Score = 81.3 bits (199), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 114/251 (45%), Gaps = 34/251 (13%)
Query: 3 NDTVDKLVIFLAKRDGIDKLVKTFQYVSKLVHWHVEATKPELAQRFKQWEVASGLSRKAF 62
N ++ L+ LA+ G DK+ K QY +KL+ + K+ E SG +RK +
Sbjct: 11 NQFLESLIKLLAQTSGKDKIAKILQYGAKLLGYIFLKRSKHWVDVMKKLETTSGSARKVW 70
Query: 63 RTG-------RFLTGFNLLRRNPGATPTLRLLAVLANAGEMVYWSFDHLLWLSRIGTLDA 115
R G + L F + +NP A L +LA++ +G YW FDHL+ + IG
Sbjct: 71 RLGNTLAEQQKILALFKV--KNPFAF--LNILALIRQSGMYFYWVFDHLILGTNIGL--C 124
Query: 116 KF-ARRLSFISAFGESFGYVFFIIADFILMKQGLAKERQL-------------VAPDHEE 161
KF +L + S+ FG + II D + L KE+ L D
Sbjct: 125 KFDTVKLGWYSSVSWFFGLLCSIIIDLNTLAIMLKKEKSLRLTITQNKINANNNNIDTHT 184
Query: 162 KSKDVEESLRKIKVDRVMR-----LMAVAANVADLIIALADIEPNPFCNHVVTLGISGLV 216
+ +VE + + V++ + A N +DLIIA ++ PF T+GISG++
Sbjct: 185 ITSEVENKAIIDQFNEVIKKKNEIYLNCAKNGSDLIIASTLLKIYPFSQG--TIGISGII 242
Query: 217 SAWSGWYRNWP 227
SA G Y+ WP
Sbjct: 243 SALIGAYQMWP 253
>sp|Q10MN3|PX112_ORYSJ Peroxisomal membrane protein 11-2 OS=Oryza sativa subsp. japonica
GN=PEX11-2 PE=2 SV=1
Length = 254
Score = 74.3 bits (181), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 108/237 (45%), Gaps = 17/237 (7%)
Query: 2 SNDTVDKLVIFLAKRDGIDKLVKTFQYVSKLVHWHVEATKP---ELAQRFKQWEVASGLS 58
D + + +L++RDG+D L+K Y ++L P R + +E + GLS
Sbjct: 24 CRDILVHIEAYLSRRDGVDNLLKVSLYAARLALALAAGQPPLPHAATARLRSFESSVGLS 83
Query: 59 RKAFRTGRFLTGFNLLRR-----NPGATPTLRLLAVLANAGEMVYWSFDHLLWLSRIGTL 113
RKAFR G+F+ N LR +P P LL +LA G+ VY + WL++ G L
Sbjct: 84 RKAFRLGKFVQSINALRAAAYHPHPHVHP---LLVLLAYGGQGVYNFLEQFAWLAKAGLL 140
Query: 114 DAK-FARRLSFISAFGESFGYVFFIIADFILMKQGLAKERQLVAPDHEEKSKDVEESLRK 172
A+ RRL I + + +V I + +A+ V EE + E +R
Sbjct: 141 PARLLPRRLHRIGVWAQLLAHVGSIAIKL----EEVAELECGVEARLEEGCGEESEVVRT 196
Query: 173 IKVDRVMRLMAVAANVADLIIALADIEPNP-FCNHVVTLGISGLVSAWSGWYRNWPS 228
+ +++LM++ ++ D + + D+ + +GL+SA ++NW S
Sbjct: 197 LSRKLLLKLMSLVQDMVDSAMTVGDVTGRKGLLGSSTLMASAGLLSALISVHKNWNS 253
>sp|Q5VRJ8|PX115_ORYSJ Peroxisomal membrane protein 11-5 OS=Oryza sativa subsp. japonica
GN=PEX11-5 PE=2 SV=1
Length = 233
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 101/227 (44%), Gaps = 19/227 (8%)
Query: 9 LVIFLAKRDGIDKLVKTFQYVSKLVHWHVEATKPELAQRFKQWEVASGLSRKAFRTGRFL 68
L+++L K + DK+ + QY SK V +P AQ + ++ L+RK FR +F+
Sbjct: 14 LILYLNKAEARDKICRAIQYGSKF----VSNGQPGPAQNVDK---STSLARKVFRLFKFV 66
Query: 69 TGFNLLRRNPG-ATP-TLRLLAVLANAGEMVYWSFDHLLWLSRIGTLD----AKFARRLS 122
+ L P TP L LL NA + D ++W R G A+F +++
Sbjct: 67 NDLHALISPPAKGTPLPLILLGKSKNALLSTFLFLDQIVWAGRTGIYKNKERAEFLSKIA 126
Query: 123 FISAFGESFGYVFFIIADFILMKQGLAK-ERQLVAPDHEEKSKDVEESLRKIKVDRVMRL 181
F G + +A+ + + + K E++L H+E K+ + ++ K + R
Sbjct: 127 FYCFLGSNTCTSIIEVAELQRLSKSMKKLEKEL---KHQELLKNEQYQMKLQKCNE--RR 181
Query: 182 MAVAANVADLIIALADIEPNPFCNHVVTLGISGLVSAWSGWYRNWPS 228
+A+ + D+++A+ ++ P G G S+ Y+ P+
Sbjct: 182 LALIKSSLDIVVAIGLLQLAPKKVTPRVTGAFGFASSLIACYQLLPA 228
>sp|Q84JW1|PX11E_ARATH Peroxisomal membrane protein 11E OS=Arabidopsis thaliana GN=PEX11E
PE=1 SV=1
Length = 231
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 96/227 (42%), Gaps = 23/227 (10%)
Query: 9 LVIFLAKRDGIDKLVKTFQYVSKLVHWHVEATKPELAQRFKQWEVASGLSRKAFRTGRFL 68
+V++L K + DK+ + QY SK + +P AQ + + L+RK FR +F+
Sbjct: 14 IVLYLNKAEARDKICRAIQYGSKFLS----GGQPGTAQTVDK---NTSLARKVFRLFKFV 66
Query: 69 TGFN-LLRRNPGATP-TLRLLAVLANAGEMVYWSFDHLLWLSRIGTLDAK----FARRLS 122
F+ L+ P TP L LL NA + D ++WL R G K R+S
Sbjct: 67 NDFHGLISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYKNKERTELLGRIS 126
Query: 123 FISAFGESFGYVFFIIADFILMKQGLAK-ERQLVAPDHEEKSKDVEESLRKIKVDRVMRL 181
G S I + + + K E++L A D ++K + + DR
Sbjct: 127 LFCWLGSSVCTSAVEIGELGRLSSSMKKMEKELKADDELYRAKLQKSN------DRT--- 177
Query: 182 MAVAANVADLIIALADIEPNPFCNHVVTLGISGLVSAWSGWYRNWPS 228
+A+ + D+I+A+ ++ P G G ++ Y+ PS
Sbjct: 178 LALIKSSMDIIVAIGLLQLAPKTISPRVTGAFGFTTSLISCYQLLPS 224
>sp|O80845|PX11D_ARATH Peroxisomal membrane protein 11D OS=Arabidopsis thaliana GN=PEX11D
PE=1 SV=2
Length = 236
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 96/228 (42%), Gaps = 21/228 (9%)
Query: 9 LVIFLAKRDGIDKLVKTFQYVSKLVHWHVEATKPELAQRFKQWEVASGLSRKAFRTGRFL 68
+V++L K + DKL + QY SK + +P AQ + ++ L+RK FR +F+
Sbjct: 15 VVMYLNKAEARDKLCRAIQYGSKFLS----GGQPGTAQNVDK---STSLARKVFRLFKFV 67
Query: 69 TGFN-LLRRNPGATP-TLRLLAVLANAGEMVYWSFDHLLWLSRIGTLD----AKFARRLS 122
+ L+ P TP L LL NA + D ++WL R G A+ R+S
Sbjct: 68 NDLHGLISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYKNKERAELLGRIS 127
Query: 123 FISAFGESFGYVFFIIADFILMKQGLAKERQLVAPDHEEKSKDVEESLRKIKVDRVMRLM 182
G S + + + + K + + ++ + +D L+K R +
Sbjct: 128 LFCWMGSSVCTTLVEVGEMGRLSSSMKKIEKGLKNGNKYQDEDYRAKLKKSN----ERSL 183
Query: 183 AVAANVADLIIA--LADIEPNPFCNHVVTLGISGLVSAWSGWYRNWPS 228
A+ + D+++A L + P V G G +++ Y+ P+
Sbjct: 184 ALIKSAMDIVVAAGLLQLAPTKITPRVT--GAFGFITSIISCYQLLPT 229
>sp|O75192|PX11A_HUMAN Peroxisomal membrane protein 11A OS=Homo sapiens GN=PEX11A PE=1
SV=1
Length = 247
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Query: 6 VDKLVIFLAKRDGIDKLVKTFQYVSKLVHWHVE--ATKPELAQRFKQWEVASGLSRKAFR 63
+D F + G D+L + QY L+ + +E A K ++ + K+ E + RK FR
Sbjct: 1 MDAFTRFTNQTQGRDRLFRATQYTCMLLRYLLEPKAGKEKVVMKLKKLESSVSTGRKWFR 60
Query: 64 TGRFLTGFNLLRRNPGATPTL-RLLAVLANAGEMVYWSFDHLLWLSRIG 111
G + ++ AT + RL LAN ++Y+ D +LW+ +G
Sbjct: 61 LGNVVHAIQATEQSIHATDLVPRLCLTLANLNRVIYFICDTILWVRSVG 109
>sp|Q10SM7|PX111_ORYSJ Peroxisomal membrane protein 11-1 OS=Oryza sativa subsp. japonica
GN=PEX11-1 PE=2 SV=1
Length = 237
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 97/223 (43%), Gaps = 11/223 (4%)
Query: 9 LVIFLAKRDGIDKLVKTFQYVSKLVHWHVEATKPELAQRFKQWEVASGLSRKAFRTGRFL 68
+V++L K + DK+ + QY SK + +P AQ + ++ L+RK FR +++
Sbjct: 14 VVLYLNKAEARDKICRAIQYGSKFIS----NGQPGTAQDVDR---STTLARKVFRLLKWV 66
Query: 69 TGFNLLRRNPG-ATP-TLRLLAVLANAGEMVYWSFDHLLWLSRIGTLDAK-FARRLSFIS 125
+ L P TP TL LL NA + D +WL R G K R+ IS
Sbjct: 67 NDLHGLISPPAKGTPLTLVLLGKSKNALLSTFLFLDQFVWLGRTGIYKNKERTDRIVRIS 126
Query: 126 AFGESFGYVFFIIADFILMKQGLAKERQLVAPDHEEKSKDVEESLRKIKVDRVMRLMAVA 185
+ V + + +K+ L+K + +A + + K + + RL+A+
Sbjct: 127 LYCWMASSVCAGLVELGELKR-LSKSMRKLARELRDTDKYENDQYKSKMKQSDERLLALV 185
Query: 186 ANVADLIIALADIEPNPFCNHVVTLGISGLVSAWSGWYRNWPS 228
D+++A+ ++ +P G G V++ Y+ PS
Sbjct: 186 KAAMDVVVAVGLLQLSPKKITPRVTGAFGFVTSLISCYQQLPS 228
>sp|Q10333|PEX11_SCHPO Peroxisomal biogenesis factor 11 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pex11 PE=3 SV=2
Length = 238
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 92/220 (41%), Gaps = 22/220 (10%)
Query: 20 DKLVKTFQYVSKLVHWHVEATKPELA--QRFKQWEVASGLSRKAFRTGRFLTGF------ 71
DK + Q+V+KL+ WH+ L+ ++K+ E SRK F G+ L
Sbjct: 24 DKTFRALQFVAKLLSWHLFYGGSSLSTVNKWKKLESNISFSRKLFSIGKVLDYICKVYFD 83
Query: 72 -----NLLRRNPGATPTLRLLAVLANAGEMVYWSFDHLLWLSRIGTLDAKFARRLSFISA 126
N L N A PT+ +A AG Y + + + W ++ + ++++S I
Sbjct: 84 SLKLQNPLSGNKSALPTISFTKDVAFAG---YATAELIGWFNKTELMPCSHSKQISTIGK 140
Query: 127 FGESFGYVFFIIADFILMKQGLAKERQLVAPDHEEKSKDVEESLRKIKVDRVMRLMAVAA 186
+ + +A ++Q +++ + E KD SL+ ++ +R L
Sbjct: 141 QCLAVALLSSCLAGCYELQQN---SKKIKSATQEASEKD-STSLQTLQKERKEILFFALQ 196
Query: 187 NVADLIIALADIEPNPFCNHVVTLGISGLVSAWSGWYRNW 226
N D I LA+++ + V +G+ ++ Y+ W
Sbjct: 197 NALDATIPLAELDILKVNDGFV--AAAGITTSLMSVYKTW 234
>sp|Q9LQ73|PX11C_ARATH Peroxisomal membrane protein 11C OS=Arabidopsis thaliana GN=PEX11C
PE=1 SV=1
Length = 235
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 90/226 (39%), Gaps = 17/226 (7%)
Query: 9 LVIFLAKRDGIDKLVKTFQYVSKLVHWHVEATKPELAQRFKQWEVASGLSRKAFRTGRFL 68
+V++L K + DK+ + QY SK + +P AQ + + L+RK FR +F+
Sbjct: 14 VVVYLNKAEARDKICRAIQYGSKF----LSDGQPGTAQNVDK---NTSLARKVFRLFKFV 66
Query: 69 TGFN-LLRRNPGATP-TLRLLAVLANAGEMVYWSFDHLLWLSRIGTL-DAKFARRLSFIS 125
+ L+ P TP L LL NA + D ++WL R G D + A L IS
Sbjct: 67 NDLHALISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRTGIYKDKERAEILGRIS 126
Query: 126 AF---GESFGYVFFIIADFILMKQGLAKERQLVAPDHEEKSKDVEESLRKIKVDRVMRLM 182
F G S + + + + K + + K K E R R +
Sbjct: 127 LFCWMGSSVCTSLVEVGELGRLSASIKKLEKEIG----NKDKHQNEQYRAKVEKSNERSL 182
Query: 183 AVAANVADLIIALADIEPNPFCNHVVTLGISGLVSAWSGWYRNWPS 228
A+ D+++A ++ P G G S+ Y+ PS
Sbjct: 183 ALIKAGMDVVVAFGLLQLAPKKVTPRVTGAFGFASSLISCYQLLPS 228
>sp|O70597|PX11A_RAT Peroxisomal membrane protein 11A OS=Rattus norvegicus GN=Pex11a
PE=1 SV=1
Length = 246
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
Query: 6 VDKLVIFLAKRDGIDKLVKTFQYVSKLVHWHVE--ATKPELAQRFKQWEVASGLSRKAFR 63
+D + + G D+L + Q+ L+ + +E A K + + K E + RK FR
Sbjct: 1 MDAFIRVANQSQGRDRLFRATQHACMLLRYLLESKAGKEAVVTKLKNLETSVSTGRKWFR 60
Query: 64 TGRFLTGFNLLRRNPGATPTL-RLLAVLANAGEMVYWSFDHLLWLSRIG 111
G L ++ AT + RL LAN +VY+ D +LW +G
Sbjct: 61 LGNVLHAIQATEQSIQATDLVPRLCLTLANLNRVVYYICDTVLWAKSVG 109
>sp|Q9Z211|PX11A_MOUSE Peroxisomal membrane protein 11A OS=Mus musculus GN=Pex11a PE=2
SV=1
Length = 246
Score = 39.3 bits (90), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Query: 6 VDKLVIFLAKRDGIDKLVKTFQYVSKLVHWHVE--ATKPELAQRFKQWEVASGLSRKAFR 63
+D + + G D+L + Q+ L+ + +E A K + + K+ E + RK FR
Sbjct: 1 MDAFIRVANQSQGRDRLFRATQHACMLLRYLLESKADKEAVVLKLKRLETSVSTGRKWFR 60
Query: 64 TGRFLTGFNLLRRN-PGATPTLRLLAVLANAGEMVYWSFDHLLWLSRIG 111
G ++ A RL LAN +VY+ D +LW +G
Sbjct: 61 LGNVFHAIQATEQSIQAADLAPRLCLTLANLNRVVYYICDTVLWAKSVG 109
>sp|Q0VCP2|PX11A_BOVIN Peroxisomal membrane protein 11A OS=Bos taurus GN=PEX11A PE=2 SV=1
Length = 247
Score = 38.5 bits (88), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Query: 6 VDKLVIFLAKRDGIDKLVKTFQYVSKLVHWHVE--ATKPELAQRFKQWEVASGLSRKAFR 63
+D + F + G D+L + QY L+ + +E A ++ + K+ E + RK FR
Sbjct: 1 MDAFIRFTNQTQGRDRLFRATQYTCMLLRYLLEPKADNEKVVMKLKKLESSVSTGRKWFR 60
Query: 64 TGRFLTGFNLLRRNPGATPTL-RLLAVLANAGEMVYWSFDHLLWLSRIG 111
G + +++ AT + R+ LA+ ++Y+ D +L++ G
Sbjct: 61 LGNVVHALQATQQSVRATDLVPRICLTLASLNRVIYFICDTVLFVRSTG 109
>sp|Q00317|PX11B_CANBO Peroxisomal membrane protein PMP30B OS=Candida boidinii GN=PEX11B
PE=1 SV=1
Length = 256
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 6 VDKLVIFLAKRDGIDKLVKTFQYVSKLVHWHV--EATKPELAQRFKQWEVASGLSRKAFR 63
V KL+ FL +KL++ QY+ + + ++ E Q K+ + + G+SRK R
Sbjct: 12 VTKLLKFLDSSASREKLLRLLQYLCRFLTFYTFKRNFNIETIQLIKKIQSSIGISRKPLR 71
Query: 64 TGR---FLTGFNLLRRNPGATPTLRLLAVLANAGEMVYWSFD 102
+ L N + N TL++ ++ N G +Y+ FD
Sbjct: 72 FLKNLPHLKNLNKIYSNELLDSTLKIGDLIKNFGYALYFQFD 113
>sp|Q00316|PX11A_CANBO Peroxisomal membrane protein PMP30A OS=Candida boidinii GN=PEX11A
PE=1 SV=1
Length = 256
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Query: 6 VDKLVIFLAKRDGIDKLVKTFQYVSKLVHWHV--EATKPELAQRFKQWEVASGLSRKAFR 63
V KL+ FL +KL++ QY+ + + ++ E Q K+ + + +SRK R
Sbjct: 12 VTKLLKFLDSSASREKLLRLLQYLCRFLTYYTFRRNINIETIQLIKKIQSSIAISRKPLR 71
Query: 64 TGR---FLTGFNLLRRNPGATPTLRLLAVLANAGEMVYWSFD 102
+ L N + N T+R+ ++ N G +Y+ FD
Sbjct: 72 FLKNLPHLKNLNKIYSNELLDSTIRIGDLIKNFGYALYFQFD 113
>sp|Q7Z443|PK1L3_HUMAN Polycystic kidney disease protein 1-like 3 OS=Homo sapiens
GN=PKD1L3 PE=2 SV=1
Length = 1732
Score = 30.8 bits (68), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
Query: 26 FQYVSKLVHWHVEATKPE--LAQRFKQWEVASGLSRKAFRTGRFLTGFNLLRRNPGATPT 83
FQY H+H+ T P+ + Q+ +++ G + L R GA T
Sbjct: 563 FQYQPNCTHFHLNITLPKDKVWQKDEEYTWVLNPEHLQHGIGTYYITAVLSERQEGAQQT 622
Query: 84 LRLLAVLANAGEMVYWSFDHLLWLS 108
L++V+ + YW + W S
Sbjct: 623 PSLVSVITAVTQCYYWEIHNQTWSS 647
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.138 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,057,975
Number of Sequences: 539616
Number of extensions: 3032576
Number of successful extensions: 9796
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 9761
Number of HSP's gapped (non-prelim): 29
length of query: 228
length of database: 191,569,459
effective HSP length: 113
effective length of query: 115
effective length of database: 130,592,851
effective search space: 15018177865
effective search space used: 15018177865
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)