Query 027077
Match_columns 228
No_of_seqs 105 out of 485
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 07:10:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027077.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027077hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1bde_A VPR protein; AIDS, HIV, 13.5 54 0.0019 17.9 0.5 19 12-30 2-20 (35)
2 3g2s_A C-terminal fragment of 11.5 2.3E+02 0.0078 20.6 3.7 30 2-31 89-126 (149)
3 3g43_E Voltage-dependent L-typ 10.3 3.9E+02 0.013 17.5 4.8 50 132-197 5-54 (81)
4 2db7_A Hairy/enhancer-OF-split 10.0 2.7E+02 0.0092 17.2 3.1 27 6-32 28-58 (64)
5 1mhq_A ADP-ribosylation factor 9.7 2.2E+02 0.0074 20.6 3.0 30 2-31 79-116 (148)
6 2kxa_A Haemagglutinin HA2 chai 9.4 1.2E+02 0.0042 15.7 1.0 10 211-220 1-10 (30)
7 1juq_A ADP-ribosylation factor 9.2 3E+02 0.01 20.4 3.7 30 2-31 91-128 (171)
8 1sn9_A BBAT, tetrameric beta-B 9.0 1.4E+02 0.0049 14.5 1.1 17 3-19 7-23 (26)
9 3d8l_A ORF12; lactococcal phag 8.3 4E+02 0.014 16.8 3.4 47 20-75 38-87 (91)
10 1elk_A Target of MYB1; superhe 8.1 3.8E+02 0.013 19.4 3.8 31 2-32 95-131 (157)
No 1
>1bde_A VPR protein; AIDS, HIV, viral protein, VPR fragment, helix; NMR {Synthetic} SCOP: j.11.1.1 PDB: 1dsj_A
Probab=13.53 E-value=54 Score=17.91 Aligned_cols=19 Identities=11% Similarity=0.375 Sum_probs=15.1
Q ss_pred HhhhcchhHHHHHHHHHHH
Q 027077 12 FLAKRDGIDKLVKTFQYVS 30 (228)
Q Consensus 12 ~l~~~~GrDK~~r~~QY~~ 30 (228)
+-+|.+|-+.+.|++|-..
T Consensus 2 yGDTw~GveaiiriLQq~L 20 (35)
T 1bde_A 2 YGDTWAGVEAIIRILQQLL 20 (35)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHH
Confidence 3467889999999998754
No 2
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=11.54 E-value=2.3e+02 Score=20.59 Aligned_cols=30 Identities=7% Similarity=0.092 Sum_probs=23.5
Q ss_pred ChHHHHHHHHHhhh--------cchhHHHHHHHHHHHH
Q 027077 2 SNDTVDKLVIFLAK--------RDGIDKLVKTFQYVSK 31 (228)
Q Consensus 2 ~~~~l~~~~~~l~~--------~~GrDK~~r~~QY~~k 31 (228)
+++|++.++++++. ..=++|++.++|-.+.
T Consensus 89 s~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 89 KFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp SHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 57899999999863 2348999999987654
No 3
>3g43_E Voltage-dependent L-type calcium channel subunit alpha-1C; calmodulin-bound, coiled coil, acetylation, methylation, phosphoprotein, polymorphism; 2.10A {Homo sapiens} PDB: 3oxq_E
Probab=10.30 E-value=3.9e+02 Score=17.46 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 027077 132 GYVFFIIADFILMKQGLAKERQLVAPDHEEKSKDVEESLRKIKVDRVMRLMAVAANVADLIIALAD 197 (228)
Q Consensus 132 ~l~~~l~~~~~~l~~~l~~e~~~~~~~~~~~~~e~~~~l~~~~~~r~~~~l~lv~~~~Dl~~~~~~ 197 (228)
+.++++||...++.. ..+ -++..+++++. ....+-.+-+...|.++|-+.
T Consensus 5 sTLfALIRtsL~IK~--~~~-----------~~~~d~ELR~~---i~~iWp~~~~k~lD~lvpp~~ 54 (81)
T 3g43_E 5 STLFALVRTALRIKT--EGN-----------LEQANEELRAI---IKKIWKRTSMKLLDQVVPPAG 54 (81)
T ss_dssp CHHHHHHHHHHHHHH--HHH-----------HHHHHHHHHHH---HHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHhhccc--ccc-----------HHHHHHHHHHH---HHHHCcccChhhcccccCCCC
Confidence 467788888777653 110 01112233222 222355677888998888653
No 4
>2db7_A Hairy/enhancer-OF-split related with YRPW motif 1; structural genomics, unknown function, DNA binding protein, NPPSFA; 1.90A {Homo sapiens} SCOP: a.273.1.1
Probab=9.99 E-value=2.7e+02 Score=17.22 Aligned_cols=27 Identities=15% Similarity=0.332 Sum_probs=17.4
Q ss_pred HHHHHHHhhhcchhH----HHHHHHHHHHHH
Q 027077 6 VDKLVIFLAKRDGID----KLVKTFQYVSKL 32 (228)
Q Consensus 6 l~~~~~~l~~~~GrD----K~~r~~QY~~kl 32 (228)
+.++.+||++.+|.| .-.|+++-....
T Consensus 28 ~~EV~rfLs~~eg~d~~d~~r~rLl~HL~~~ 58 (64)
T 2db7_A 28 LAEVARYLSIIEGLDASDPLRVRLVSHLNNY 58 (64)
T ss_dssp HHHHHHHHHHTSCCCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHHHHH
Confidence 567778888877776 455666554433
No 5
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=9.73 E-value=2.2e+02 Score=20.65 Aligned_cols=30 Identities=7% Similarity=0.073 Sum_probs=22.9
Q ss_pred ChHHHHHHHHHhhh--------cchhHHHHHHHHHHHH
Q 027077 2 SNDTVDKLVIFLAK--------RDGIDKLVKTFQYVSK 31 (228)
Q Consensus 2 ~~~~l~~~~~~l~~--------~~GrDK~~r~~QY~~k 31 (228)
+++|++.++++++. ..=++|++.++|-.+.
T Consensus 79 s~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 79 KFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp SHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 57899999998874 2348999998887553
No 6
>2kxa_A Haemagglutinin HA2 chain peptide; fusion peptide, viral protein, immune system; NMR {Influenza a virus}
Probab=9.36 E-value=1.2e+02 Score=15.70 Aligned_cols=10 Identities=20% Similarity=0.617 Sum_probs=5.3
Q ss_pred hhhhhHHHHH
Q 027077 211 GISGLVSAWS 220 (228)
Q Consensus 211 g~~G~iSs~i 220 (228)
|++|.|+++|
T Consensus 1 GlFGAIAGfi 10 (30)
T 2kxa_A 1 GLFGAIAGFI 10 (30)
T ss_dssp CHHHHHHHHH
T ss_pred Ccchhhhhhh
Confidence 3455555544
No 7
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=9.22 E-value=3e+02 Score=20.43 Aligned_cols=30 Identities=7% Similarity=0.074 Sum_probs=23.0
Q ss_pred ChHHHHHHHHHhhh--------cchhHHHHHHHHHHHH
Q 027077 2 SNDTVDKLVIFLAK--------RDGIDKLVKTFQYVSK 31 (228)
Q Consensus 2 ~~~~l~~~~~~l~~--------~~GrDK~~r~~QY~~k 31 (228)
++++++.++++++. ..=|+|++.++|-.+.
T Consensus 91 s~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 91 KFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp SHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 56899999999863 2458999999887553
No 8
>1sn9_A BBAT, tetrameric beta-BETA-alpha mini-protein; protein design, domain swapping, oligomerization, de novo protein; HET: DBZ; 1.20A {Synthetic} SCOP: k.14.1.1 PDB: 1sna_A* 1sne_A* 1xof_B* 1xof_A*
Probab=8.98 E-value=1.4e+02 Score=14.53 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=11.6
Q ss_pred hHHHHHHHHHhhhcchh
Q 027077 3 NDTVDKLVIFLAKRDGI 19 (228)
Q Consensus 3 ~~~l~~~~~~l~~~~Gr 19 (228)
-|+.|.+.+++.+..|.
T Consensus 7 ydfadelakllrqa~g~ 23 (26)
T 1sn9_A 7 YDFADELAKLLRQAXGX 23 (26)
T ss_dssp BCHHHHHHHHHHHHTC-
T ss_pred cchHHHHHHHHHHhhCc
Confidence 36777788877777664
No 9
>3d8l_A ORF12; lactococcal phage P2, viral protein; 2.90A {Lactococcus phage SK1}
Probab=8.34 E-value=4e+02 Score=16.78 Aligned_cols=47 Identities=19% Similarity=0.132 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhHHHHHHHh---cCChhHHHHhh
Q 027077 20 DKLVKTFQYVSKLVHWHVEATKPELAQRFKQWEVASGLSRKAFRT---GRFLTGFNLLR 75 (228)
Q Consensus 20 DK~~r~~QY~~kl~~~~l~~~~~~~~~~~~~l~~~ls~~Rk~~Rl---~~~l~~~~~l~ 75 (228)
--++.++||+.-+.. .+ . .+.+..+.+|+.|.-|-+ |+-+.++..+.
T Consensus 38 tdlmefvqyglylal--fq-d------nivkaksdfsdfrssfefdtdgkglkelvelw 87 (91)
T 3d8l_A 38 TDLMEFVQYGLYLAL--FQ-D------NIVKAKSDFSDFRSSFEFDTDGKGLKELVELW 87 (91)
T ss_dssp HHHHHHHHHHHHHHH--HC-C------CHHHHHHHHHHHHHHCCCCCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HH-h------hhHhhhcchHHhHhhccccCCCccHHHHHHHH
Confidence 457889999876543 21 1 234566778888887766 45555554443
No 10
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=8.08 E-value=3.8e+02 Score=19.40 Aligned_cols=31 Identities=26% Similarity=0.185 Sum_probs=22.0
Q ss_pred ChHHHHH-HHHHhhh-c----chhHHHHHHHHHHHHH
Q 027077 2 SNDTVDK-LVIFLAK-R----DGIDKLVKTFQYVSKL 32 (228)
Q Consensus 2 ~~~~l~~-~~~~l~~-~----~GrDK~~r~~QY~~kl 32 (228)
++++++. +++.++. . .=|+|++.++|-.+.-
T Consensus 95 ~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 95 SQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp SHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 5678898 7888742 1 3488998888876543
Done!