Query 027077
Match_columns 228
No_of_seqs 105 out of 485
Neff 8.4
Searched_HMMs 13730
Date Mon Mar 25 07:10:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027077.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027077hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1be3k_ f.23.15.1 (K:) Subunit 30.0 7.9 0.00058 17.9 0.7 11 208-218 11-21 (26)
2 d1gm5a1 a.24.21.1 (A:7-105) Re 26.3 56 0.0041 20.6 4.6 67 4-76 18-91 (99)
3 d2gnoa1 a.80.1.1 (A:209-306) g 13.6 1.3E+02 0.0098 17.9 6.6 32 3-35 22-53 (98)
4 d1dvpa1 a.118.9.2 (A:1-145) Hr 9.8 1.6E+02 0.012 19.3 4.1 30 2-31 83-115 (145)
5 d1h6pa_ a.146.1.1 (A:) TRF2 {H 9.5 42 0.0031 24.3 0.8 26 10-35 46-71 (203)
6 d1kbha_ a.153.1.1 (A:) Nuclear 8.4 1.1E+02 0.008 16.3 2.0 23 4-26 8-32 (47)
7 d2ddha2 a.29.3.2 (A:475-655) P 7.9 3.1E+02 0.023 18.5 9.8 36 84-120 78-113 (181)
8 d1xl3c1 a.243.1.1 (C:2-92) Tye 7.1 51 0.0037 20.6 0.3 21 12-32 58-78 (91)
9 d1ej5a_ a.68.1.1 (A:) Wiscott- 6.3 2.8E+02 0.02 17.5 3.8 26 3-28 43-68 (107)
10 d3bqoa1 a.146.1.1 (A:62-265) T 5.5 1.1E+02 0.0083 21.8 1.5 25 10-34 49-73 (204)
No 1
>d1be3k_ f.23.15.1 (K:) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=30.04 E-value=7.9 Score=17.91 Aligned_cols=11 Identities=55% Similarity=0.682 Sum_probs=7.8
Q ss_pred chhhhhhhHHH
Q 027077 208 VTLGISGLVSA 218 (228)
Q Consensus 208 ~~vg~~G~iSs 218 (228)
|.||..|++|+
T Consensus 11 gavgavglvsa 21 (26)
T d1be3k_ 11 GAVGAVGLVSA 21 (26)
T ss_dssp HHHHHHHHHHH
T ss_pred hhhcceeEEee
Confidence 46777787775
No 2
>d1gm5a1 a.24.21.1 (A:7-105) RecG, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=26.29 E-value=56 Score=20.61 Aligned_cols=67 Identities=15% Similarity=0.187 Sum_probs=46.4
Q ss_pred HHHHHHHHHhhh-cchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH------hhhHHHHHHHhcCChhHHHHhhh
Q 027077 4 DTVDKLVIFLAK-RDGIDKLVKTFQYVSKLVHWHVEATKPELAQRFKQWEV------ASGLSRKAFRTGRFLTGFNLLRR 76 (228)
Q Consensus 4 ~~l~~~~~~l~~-~~GrDK~~r~~QY~~kl~~~~l~~~~~~~~~~~~~l~~------~ls~~Rk~~Rl~~~l~~~~~l~~ 76 (228)
|++|..-+.+.. .+|++ +.|+.-++= ..+ ..+|+..++++++.. ++-..|+..|+.+.++|++.++.
T Consensus 18 dFLd~~e~il~~~~~~k~----~~El~eeId-DpL-len~el~~kLqeF~~Yi~~~~~Lp~eR~~kRvk~~~gMIerfR~ 91 (99)
T d1gm5a1 18 EFLNEVEKMLKNQVNTRR----IHQLLKELD-DPL-LENKDLEEKLQAFLDYVKEIPNLPEARKRYRIQKSLEMIEKLRS 91 (99)
T ss_dssp HHHHHHHHHHTSCCCTTT----HHHHHHHCC-CGG-GGCHHHHHHHHHHHHHHTTSSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHH----HHHHHHHhc-cHh-hcCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccHHHHHHHHH
Confidence 678888777776 77773 444433321 011 146888888888765 45588999999999999987764
No 3
>d2gnoa1 a.80.1.1 (A:209-306) gamma subunit {Thermotoga maritima [TaxId: 2336]}
Probab=13.55 E-value=1.3e+02 Score=17.90 Aligned_cols=32 Identities=9% Similarity=0.156 Sum_probs=26.1
Q ss_pred hHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHH
Q 027077 3 NDTVDKLVIFLAKRDGIDKLVKTFQYVSKLVHW 35 (228)
Q Consensus 3 ~~~l~~~~~~l~~~~GrDK~~r~~QY~~kl~~~ 35 (228)
..+++-|-...++..|||-++ ++|-..+++.+
T Consensus 22 k~ff~lfdqv~ntitg~dafl-liq~~~riilh 53 (98)
T d2gnoa1 22 KEFFALFDQVTNTITGKDAFL-LIQRLTRIILH 53 (98)
T ss_dssp GGHHHHHHHHHHHSCTHHHHH-HHHHHHHHHHH
T ss_pred chHHHHHHHHHhhcccchHHH-HHHHHHHHhcc
Confidence 467888889999999999876 67888888764
No 4
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=9.75 E-value=1.6e+02 Score=19.33 Aligned_cols=30 Identities=13% Similarity=0.216 Sum_probs=22.4
Q ss_pred ChHHHHHHHHHhhhc---chhHHHHHHHHHHHH
Q 027077 2 SNDTVDKLVIFLAKR---DGIDKLVKTFQYVSK 31 (228)
Q Consensus 2 ~~~~l~~~~~~l~~~---~GrDK~~r~~QY~~k 31 (228)
+.++++.+.++.++. .-++|++.++|-.+.
T Consensus 83 s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (145)
T d1dvpa1 83 TKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (145)
T ss_dssp SHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 567888888888664 358888888876554
No 5
>d1h6pa_ a.146.1.1 (A:) TRF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.49 E-value=42 Score=24.27 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=17.4
Q ss_pred HHHhhhcchhHHHHHHHHHHHHHHHH
Q 027077 10 VIFLAKRDGIDKLVKTFQYVSKLVHW 35 (228)
Q Consensus 10 ~~~l~~~~GrDK~~r~~QY~~kl~~~ 35 (228)
+..++....-+|.+++.|+.+|+--+
T Consensus 46 ~~~~~~~~~~~kti~i~QfL~RI~eG 71 (203)
T d1h6pa_ 46 VRPLGKEHTVSRLLRVMQCLSRIEEG 71 (203)
T ss_dssp TSCCC----CHHHHHHHHHHHHHHTT
T ss_pred hCccccccchhhHHHHHHHHHHHHcC
Confidence 35566677889999999999998643
No 6
>d1kbha_ a.153.1.1 (A:) Nuclear receptor coactivator ACTR {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.39 E-value=1.1e+02 Score=16.27 Aligned_cols=23 Identities=22% Similarity=0.561 Sum_probs=17.0
Q ss_pred HHHHHHHHHhhhcc--hhHHHHHHH
Q 027077 4 DTVDKLVIFLAKRD--GIDKLVKTF 26 (228)
Q Consensus 4 ~~l~~~~~~l~~~~--GrDK~~r~~ 26 (228)
..++++..+|+.++ |.+-+=|.+
T Consensus 8 aLldQL~s~L~~~D~~~LeEiDrAL 32 (47)
T d1kbha_ 8 ALLDQLHTLLSNTDATGLEEIDRAL 32 (47)
T ss_dssp HHHHHHHHHTTSSCCTTHHHHHHHT
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHh
Confidence 47899999999777 666555543
No 7
>d2ddha2 a.29.3.2 (A:475-655) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=7.88 E-value=3.1e+02 Score=18.46 Aligned_cols=36 Identities=8% Similarity=-0.198 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHhHHH
Q 027077 84 LRLLAVLANAGEMVYWSFDHLLWLSRIGTLDAKFARR 120 (228)
Q Consensus 84 ~~~l~~~~~~~~~~y~~~D~v~wl~~~gl~~~~~~~~ 120 (228)
..+|..+.. .++++.+.++..|+-..|.++++..+.
T Consensus 78 k~vL~~L~~-LyaL~~i~~~~g~fl~~g~ls~~q~~~ 113 (181)
T d2ddha2 78 QAVLRNLCL-LYSLYGISQKGGDFLEGSIITGAQLSQ 113 (181)
T ss_dssp HHHHHHHHH-HHHHHHHHHTHHHHHHTTSSCHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHhHHHHHhcCCCCHHHHHH
Confidence 334444443 367899999999999999998765433
No 8
>d1xl3c1 a.243.1.1 (C:2-92) TyeA {Yersinia pestis [TaxId: 632]}
Probab=7.11 E-value=51 Score=20.63 Aligned_cols=21 Identities=10% Similarity=0.222 Sum_probs=16.4
Q ss_pred HhhhcchhHHHHHHHHHHHHH
Q 027077 12 FLAKRDGIDKLVKTFQYVSKL 32 (228)
Q Consensus 12 ~l~~~~GrDK~~r~~QY~~kl 32 (228)
..+..++|+|++..+|=+.--
T Consensus 58 ~f~d~e~R~~lL~a~Q~ALD~ 78 (91)
T d1xl3c1 58 VFSDEEQRQNLLQMCQNAIDM 78 (91)
T ss_dssp GSSCHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHH
Confidence 346678999999999987644
No 9
>d1ej5a_ a.68.1.1 (A:) Wiscott-Aldrich syndrome protein, WASP, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.34 E-value=2.8e+02 Score=17.49 Aligned_cols=26 Identities=12% Similarity=0.339 Sum_probs=20.0
Q ss_pred hHHHHHHHHHhhhcchhHHHHHHHHH
Q 027077 3 NDTVDKLVIFLAKRDGIDKLVKTFQY 28 (228)
Q Consensus 3 ~~~l~~~~~~l~~~~GrDK~~r~~QY 28 (228)
+++..-+.+|..+..|.|++-+-+.+
T Consensus 43 ~et~~~I~~Fiek~gG~e~v~~e~~~ 68 (107)
T d1ej5a_ 43 AETSKLIYDFIEDQGGLEAVRQEMRR 68 (107)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 46777788888888888888777654
No 10
>d3bqoa1 a.146.1.1 (A:62-265) TRF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.47 E-value=1.1e+02 Score=21.84 Aligned_cols=25 Identities=4% Similarity=0.014 Sum_probs=18.7
Q ss_pred HHHhhhcchhHHHHHHHHHHHHHHH
Q 027077 10 VIFLAKRDGIDKLVKTFQYVSKLVH 34 (228)
Q Consensus 10 ~~~l~~~~GrDK~~r~~QY~~kl~~ 34 (228)
+..++.+.-+.|.+++.|+.+|+--
T Consensus 49 ~~~~~~~~~~~k~i~i~QfLsRI~e 73 (204)
T d3bqoa1 49 HGLSSLTACQLRTIYICQFLTRIAA 73 (204)
T ss_dssp HTCSCCCHHHHHHHHHHHHHHHHHT
T ss_pred hCccccCccchhHHHHHHHHHHHHc
Confidence 3445556667899999999999854
Done!