BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027078
(228 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KEV|A Chain A, X-Ray Crystal Structure Of A Dcun1 Domain-Containing
Protein From Galdieria Sulfuraria
Length = 199
Score = 120 bits (301), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 69/190 (36%), Positives = 113/190 (59%), Gaps = 5/190 (2%)
Query: 38 IDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRG 97
I LF +Y I EG++ L DI+V +DV L+LAWK+KA F+ +E+ G
Sbjct: 9 ILELFQTYKEPLGNYIGAEGLQRLFEDIQVDPSDVVTLVLAWKLKASSTXEFSEKEFVEG 68
Query: 98 LKALRADTVNKLKKALPDLEKEVKRPTNFQDFYAFAFRYCLTEEKQKSVDIESVCELLGL 157
L L+ D++ KLK+ L L KE++ P+ F+ FY F F+Y E Q+S+ E+ L +
Sbjct: 69 LANLQVDSLEKLKRKLSSLRKEIEDPSKFRAFYQFVFQYS-KEPSQRSLPAETAXALWDV 127
Query: 158 VLGSQYRAQVDYLIEYLKIQSDYKVINMDQWMGFYRFCNEISFPDFNNYDPNLAWPLVLD 217
+L ++ + +D +E+LK ++ I+ D W Y F ++S D ++YD N AWP+++D
Sbjct: 128 LLRGRF-SLLDSWLEFLK--NNTHSISRDTWNLLYDFS-QLSEKDLSDYDENGAWPVLID 183
Query: 218 NFVEWMKAKQ 227
+FV+W+K +Q
Sbjct: 184 DFVKWLKHEQ 193
>pdb|4GBA|A Chain A, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
pdb|4GBA|B Chain B, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
Length = 221
Score = 114 bits (285), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 102/190 (53%), Gaps = 3/190 (1%)
Query: 35 MERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEW 94
++R++ LF Y ++ I EG+E C+D+ V T+ R+L+LAWK +A FT +E+
Sbjct: 5 LQRLEELFRRYKDEREDAILEEGMERFCNDLCVDPTEFRVLLLAWKFQAATMCKFTRKEF 64
Query: 95 RRGLKALRADTVNKLKKALPDLEKEVKRPTNFQDFYAFAFRYCL-TEEKQKSVDIESVCE 153
G KA+ AD+++ + P L E K+ F+D Y F F++ L +EE Q+S+ E
Sbjct: 65 FDGCKAISADSIDGICARFPSLLTEAKQEDKFKDLYRFTFQFGLDSEEGQRSLHREIAIA 124
Query: 154 LLGLVLGSQYRAQVDYLIEYL-KIQSDYKVINMDQWMGFYRFCNEISFPDFNNYDPNLAW 212
L LV +D + +L + S K I+ D W F F I PD +NY + AW
Sbjct: 125 LWKLVFTQNNPPVLDQWLNFLTENPSGIKGISRDTWNMFLNFTQVIG-PDLSNYSEDEAW 183
Query: 213 PLVLDNFVEW 222
P + D FVEW
Sbjct: 184 PSLFDTFVEW 193
>pdb|3TDU|A Chain A, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Acetylated Ubc12n Complex
pdb|3TDU|B Chain B, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Acetylated Ubc12n Complex
pdb|3TDZ|A Chain A, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Stapled Acetylated Ubc12n Complex
pdb|3TDZ|B Chain B, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Stapled Acetylated Ubc12n Complex
Length = 200
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 105/192 (54%), Gaps = 5/192 (2%)
Query: 36 ERIDNLFYSYAN-KSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEW 94
++++ L+ Y + + I +GI+ C D+ + + +L++AWK +A Q F+ +E+
Sbjct: 4 KKLEQLYNRYKDPQDENKIGIDGIQQFCDDLALDPASISVLIIAWKFRAATQCEFSKQEF 63
Query: 95 RRGLKALRADTVNKLKKALPDLEKEVKRPTNFQDFYAFAFRYCLTEEKQKSVDIESVCEL 154
G+ L D++ KLK +P +E+E+K P F+DFY F F + QK +D+E
Sbjct: 64 MDGMTELGCDSIEKLKAQIPKMEQELKEPGRFKDFYQFTFNFA-KNPGQKGLDLEMAIAY 122
Query: 155 LGLVLGSQYRAQVDYLIEYLKIQSDYKVINMDQWMGFYRFCNEISFPDFNNYDPNLAWPL 214
LVL +++ +D ++L ++ + I D W F I+ D +NYD AWP+
Sbjct: 123 WNLVLNGRFKF-LDLWNKFL-LEHHKRSIPKDTWNLLLDFSTMIA-DDMSNYDEEGAWPV 179
Query: 215 VLDNFVEWMKAK 226
++D+FVE+ + +
Sbjct: 180 LIDDFVEFARPQ 191
>pdb|4GAO|A Chain A, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
pdb|4GAO|B Chain B, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
pdb|4GAO|D Chain D, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
pdb|4GAO|G Chain G, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
Length = 200
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 104/194 (53%), Gaps = 5/194 (2%)
Query: 36 ERIDNLFYSYAN-KSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEW 94
++++ L+ Y + + I +GI+ C D+ + + +L++AWK +A Q F+ +E+
Sbjct: 4 KKLERLYGRYKDPQDENKIGVDGIQQFCDDLSLDPASISVLVIAWKFRAATQCEFSRKEF 63
Query: 95 RRGLKALRADTVNKLKKALPDLEKEVKRPTNFQDFYAFAFRYCLTEEKQKSVDIESVCEL 154
G+ L D++ KLK LP LE+E+K F+DFY F F + QK +D+E
Sbjct: 64 LDGMTELGCDSMEKLKALLPRLEQELKDTAKFKDFYQFTFTFA-KNPGQKGLDLEMAVAY 122
Query: 155 LGLVLGSQYRAQVDYLIEYLKIQSDYKVINMDQWMGFYRFCNEISFPDFNNYDPNLAWPL 214
LVL +++ +D +L ++ + I D W F N I+ D +NYD AWP+
Sbjct: 123 WKLVLSGRFKF-LDLWNTFL-MEHHKRSIPRDTWNLLLDFGNMIA-DDMSNYDEEGAWPV 179
Query: 215 VLDNFVEWMKAKQT 228
++D+FVE+ + T
Sbjct: 180 LIDDFVEYARPVVT 193
>pdb|3BQ3|A Chain A, Crystal Structure Of S. Cerevisiae Dcn1
Length = 270
Score = 31.2 bits (69), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 11/110 (10%)
Query: 126 FQDFYAFAFRYCLTEEKQKSVDIESVCELLGLVLGSQY--RAQVDYLIEYLKIQSD--YK 181
F Y +AF L + +K +D + + L +Y R + D L + + D
Sbjct: 164 FTQIYNYAFNLIL-DPNRKDIDTDEGIQYWKLFFQPEYPVRXEPDLLEAWFRFLRDEGKT 222
Query: 182 VINMDQWMGFYRFCNEISFPDF----NNYDPNLAWPLVLDNFVEWMKAKQ 227
I+ D W F +P ++YD AWP ++D F E ++ +Q
Sbjct: 223 TISKDTWRXLLLFFKR--YPTIQKIISDYDETAAWPFIIDEFYECLQDQQ 270
>pdb|3O2P|A Chain A, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb)
pdb|3O6B|A Chain A, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|C Chain C, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|E Chain E, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|G Chain G, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|I Chain I, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3TDI|B Chain B, Yeast Cul1whb-Dcn1p Acetylated Ubc12n Complex
pdb|3TDI|A Chain A, Yeast Cul1whb-Dcn1p Acetylated Ubc12n Complex
Length = 202
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 57/132 (43%), Gaps = 12/132 (9%)
Query: 105 TVNKLKKALPDLEKEVKRPTN-FQDFYAFAFRYCLTEEKQKSVDIESVCELLGLVLGSQY 163
T++ +++ + L+ ++ F Y +AF L + +K +D + + L +Y
Sbjct: 74 TISDMQECIKTLDVKLHEDLQYFTQIYNYAFNLIL-DPNRKDIDTDEGIQYWKLFFQPEY 132
Query: 164 --RAQVDYLIEYLKIQSD--YKVINMDQWMGFYRFCNEISFPDF----NNYDPNLAWPLV 215
R + D L + + D I+ D W F +P ++YD AWP +
Sbjct: 133 PVRMEPDLLEAWFRFLRDEGKTTISKDTWRMLLLFFKR--YPTIQKIISDYDETAAWPFI 190
Query: 216 LDNFVEWMKAKQ 227
+D F E ++ +Q
Sbjct: 191 IDEFYECLQDQQ 202
>pdb|2IS9|A Chain A, Structure Of Yeast Dcn-1
Length = 204
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 11/110 (10%)
Query: 126 FQDFYAFAFRYCLTEEKQKSVDIESVCELLGLVLGSQY--RAQVDYLIEYLKIQSD--YK 181
F Y +AF L + +K +D + + L +Y R + D L + + D
Sbjct: 98 FTQIYNYAFNLIL-DPNRKDIDTDEGIQYWKLFFQPEYPVRMEPDLLEAWFRFLRDEGKT 156
Query: 182 VINMDQWMGFYRFCNEISFPDF----NNYDPNLAWPLVLDNFVEWMKAKQ 227
I+ D W F +P ++YD AWP ++D F E ++ +Q
Sbjct: 157 TISKDTWRMLLLFFK--RYPTIQKIISDYDETAAWPFIIDEFYECLQDQQ 204
>pdb|2Q80|A Chain A, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|B Chain B, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|C Chain C, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|D Chain D, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|E Chain E, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
pdb|2Q80|F Chain F, Crystal Structure Of Human Geranylgeranyl Pyrophosphate
Synthase Bound To Ggpp
Length = 301
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 14/82 (17%)
Query: 137 CLTEEKQKSVDIESVCELLGLVLG-----SQYRAQVDYLIE----YLKIQSDYKVINMDQ 187
C TEE+ K++ ++ L GL +G S Y+ + L+ + +I+ DY ++ +
Sbjct: 139 CPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKEDLKPLLNTLGLFFQIRDDYANLHSKE 198
Query: 188 WMGFYRFCNEI-----SFPDFN 204
+ FC ++ SFP +
Sbjct: 199 YSENKSFCEDLTEGKFSFPTIH 220
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,539,200
Number of Sequences: 62578
Number of extensions: 258181
Number of successful extensions: 536
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 523
Number of HSP's gapped (non-prelim): 11
length of query: 228
length of database: 14,973,337
effective HSP length: 95
effective length of query: 133
effective length of database: 9,028,427
effective search space: 1200780791
effective search space used: 1200780791
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)