Query 027078
Match_columns 228
No_of_seqs 117 out of 338
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 04:39:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027078.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027078hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3077 Uncharacterized conser 100.0 2.4E-65 5.3E-70 450.2 18.8 222 3-228 16-253 (260)
2 PF03556 Cullin_binding: Culli 100.0 3.2E-45 6.8E-50 290.7 10.1 116 106-224 1-117 (117)
3 cd00051 EFh EF-hand, calcium b 94.9 0.16 3.4E-06 32.7 6.6 61 38-98 2-62 (63)
4 cd05031 S-100A10_like S-100A10 94.1 0.22 4.7E-06 37.3 6.6 70 35-104 7-83 (94)
5 PTZ00183 centrin; Provisional 94.1 1.1 2.4E-05 35.2 11.1 69 32-100 13-81 (158)
6 PF13833 EF-hand_8: EF-hand do 94.0 0.14 3.1E-06 34.0 4.8 50 51-100 3-53 (54)
7 PTZ00184 calmodulin; Provision 93.8 2.4 5.2E-05 32.7 15.5 68 33-100 8-75 (149)
8 smart00027 EH Eps15 homology d 93.8 0.32 6.9E-06 36.5 6.9 68 32-101 6-73 (96)
9 cd00052 EH Eps15 homology doma 93.4 0.42 9.1E-06 32.4 6.5 62 39-102 2-63 (67)
10 KOG3077 Uncharacterized conser 93.2 0.11 2.4E-06 46.8 4.2 85 126-215 80-164 (260)
11 cd05030 calgranulins Calgranul 93.1 0.44 9.5E-06 35.5 6.6 70 33-102 5-81 (88)
12 PTZ00183 centrin; Provisional 92.9 0.61 1.3E-05 36.7 7.7 81 35-116 52-135 (158)
13 cd05029 S-100A6 S-100A6: S-100 92.6 0.57 1.2E-05 35.1 6.7 70 33-102 7-81 (88)
14 PF13499 EF-hand_7: EF-hand do 92.2 0.52 1.1E-05 32.2 5.7 62 37-98 1-66 (66)
15 cd00213 S-100 S-100: S-100 dom 91.6 1.2 2.7E-05 32.4 7.5 69 33-101 5-80 (88)
16 PTZ00184 calmodulin; Provision 91.0 1.2 2.6E-05 34.4 7.2 97 35-131 46-144 (149)
17 cd05023 S-100A11 S-100A11: S-1 89.9 2.2 4.8E-05 32.0 7.5 70 33-102 6-82 (89)
18 cd05026 S-100Z S-100Z: S-100Z 89.8 1.8 4E-05 32.4 7.1 69 34-102 8-83 (93)
19 KOG0027 Calmodulin and related 88.9 3.7 8E-05 33.1 8.7 72 33-104 5-76 (151)
20 cd05022 S-100A13 S-100A13: S-1 88.1 3.7 8E-05 30.9 7.6 69 33-101 5-76 (89)
21 KOG0036 Predicted mitochondria 88.0 1.9 4E-05 41.6 7.1 82 36-120 82-163 (463)
22 PF09279 EF-hand_like: Phospho 84.7 2 4.4E-05 31.1 4.5 63 37-100 1-69 (83)
23 cd05027 S-100B S-100B: S-100B 83.9 8.4 0.00018 28.7 7.7 69 33-101 5-80 (88)
24 COG5126 FRQ1 Ca2+-binding prot 83.0 5.8 0.00013 33.3 7.1 67 34-100 90-156 (160)
25 cd05025 S-100A1 S-100A1: S-100 82.6 10 0.00023 27.9 7.8 68 34-101 7-81 (92)
26 TIGR01446 DnaD_dom DnaD and ph 82.2 2.6 5.7E-05 29.8 4.2 56 52-110 15-72 (73)
27 COG5126 FRQ1 Ca2+-binding prot 81.9 15 0.00032 30.9 9.1 86 32-118 16-103 (160)
28 KOG0028 Ca2+-binding protein ( 81.1 24 0.00052 30.0 10.1 106 32-137 29-136 (172)
29 KOG0027 Calmodulin and related 77.3 13 0.00027 29.9 7.2 71 33-103 41-116 (151)
30 PF05517 p25-alpha: p25-alpha 76.3 12 0.00025 30.9 6.8 98 38-135 1-123 (154)
31 PF12763 EF-hand_4: Cytoskelet 73.7 7.3 0.00016 30.2 4.7 66 32-101 6-72 (104)
32 PF13833 EF-hand_8: EF-hand do 73.0 7.2 0.00016 25.5 4.0 47 86-132 2-50 (54)
33 PF14658 EF-hand_9: EF-hand do 72.1 11 0.00025 27.1 5.0 51 50-100 12-64 (66)
34 KOG0036 Predicted mitochondria 71.8 33 0.00071 33.3 9.4 91 33-123 11-118 (463)
35 PLN02964 phosphatidylserine de 71.6 23 0.00049 36.1 8.8 81 33-117 140-225 (644)
36 PF13405 EF-hand_6: EF-hand do 70.8 5.4 0.00012 23.5 2.7 30 37-66 1-31 (31)
37 PF00036 EF-hand_1: EF hand; 68.3 3.8 8.2E-05 24.5 1.6 19 83-101 11-29 (29)
38 KOG0030 Myosin essential light 66.4 26 0.00057 29.2 6.6 67 34-100 9-77 (152)
39 cd00252 SPARC_EC SPARC_EC; ext 64.4 48 0.001 26.1 7.7 62 33-98 45-106 (116)
40 PRK10391 oriC-binding nucleoid 59.0 19 0.00041 26.4 4.0 40 90-131 2-41 (71)
41 KOG0028 Ca2+-binding protein ( 57.3 58 0.0013 27.7 7.2 60 41-100 111-170 (172)
42 PF07531 TAFH: NHR1 homology t 52.6 36 0.00077 26.4 4.9 64 57-126 12-83 (96)
43 KOG2643 Ca2+ binding protein, 51.7 33 0.0007 33.5 5.5 92 51-155 301-398 (489)
44 cd00052 EH Eps15 homology doma 49.6 40 0.00086 22.3 4.4 31 82-113 9-39 (67)
45 cd03567 VHS_GGA VHS domain fam 48.3 1.5E+02 0.0032 24.1 8.2 92 40-131 4-129 (139)
46 KOG0034 Ca2+/calmodulin-depend 47.3 1.4E+02 0.003 25.6 8.2 136 34-192 28-173 (187)
47 PF05042 Caleosin: Caleosin re 46.8 78 0.0017 27.1 6.5 61 34-94 94-160 (174)
48 PF12238 MSA-2c: Merozoite sur 46.8 34 0.00075 29.9 4.5 54 19-72 66-121 (205)
49 PF13443 HTH_26: Cro/C1-type H 46.0 13 0.00029 25.0 1.5 22 51-72 36-57 (63)
50 PRK10945 gene expression modul 43.9 35 0.00075 25.1 3.4 40 89-131 6-45 (72)
51 smart00027 EH Eps15 homology d 43.7 55 0.0012 24.1 4.7 70 67-137 4-74 (96)
52 PF01314 AFOR_C: Aldehyde ferr 41.4 14 0.00031 34.7 1.5 36 58-94 116-151 (382)
53 PLN02964 phosphatidylserine de 41.2 1.3E+02 0.0028 30.8 8.2 64 37-100 180-243 (644)
54 TIGR01565 homeo_ZF_HD homeobox 41.1 65 0.0014 22.5 4.4 40 32-72 10-49 (58)
55 smart00862 Trans_reg_C Transcr 40.5 73 0.0016 21.8 4.7 52 69-121 6-59 (78)
56 PF00046 Homeobox: Homeobox do 35.7 57 0.0012 21.5 3.3 38 32-74 9-46 (57)
57 PF07848 PaaX: PaaX-like prote 34.3 30 0.00066 24.9 1.9 38 37-74 5-42 (70)
58 cd05022 S-100A13 S-100A13: S-1 34.3 99 0.0022 23.1 4.8 63 72-138 7-78 (89)
59 PF00486 Trans_reg_C: Transcri 34.0 83 0.0018 21.6 4.1 49 72-121 9-58 (77)
60 KOG0037 Ca2+-binding protein, 32.4 2E+02 0.0043 25.6 6.9 69 34-102 55-124 (221)
61 PLN02223 phosphoinositide phos 31.7 96 0.0021 31.0 5.4 65 35-100 15-92 (537)
62 PF13499 EF-hand_7: EF-hand do 31.6 1.6E+02 0.0034 19.5 6.1 54 79-132 7-65 (66)
63 PLN02230 phosphoinositide phos 30.3 1.4E+02 0.003 30.3 6.4 66 34-100 27-102 (598)
64 KOG0041 Predicted Ca2+-binding 30.0 1.9E+02 0.0042 25.7 6.4 67 33-99 96-162 (244)
65 COG0177 Nth Predicted EndoIII- 29.7 52 0.0011 28.9 2.9 39 31-69 44-83 (211)
66 PF07261 DnaB_2: Replication i 29.6 7.7 0.00017 27.3 -1.9 59 54-113 17-75 (77)
67 KOG0377 Protein serine/threoni 28.6 2.6E+02 0.0057 27.7 7.6 66 35-100 546-615 (631)
68 PF06535 RGM_N: Repulsive guid 28.2 17 0.00037 30.7 -0.3 16 201-217 115-130 (161)
69 PF12174 RST: RCD1-SRO-TAF4 (R 28.1 42 0.00091 24.3 1.8 17 85-101 38-54 (70)
70 PF13624 SurA_N_3: SurA N-term 27.7 66 0.0014 25.4 3.0 60 53-113 84-144 (154)
71 smart00368 LRR_RI Leucine rich 27.6 66 0.0014 18.6 2.3 17 50-66 11-27 (28)
72 COG3710 CadC DNA-binding winge 27.5 76 0.0016 26.0 3.4 71 65-137 28-103 (148)
73 PF11116 DUF2624: Protein of u 27.4 2.8E+02 0.006 21.0 6.8 52 51-102 13-64 (85)
74 PF14788 EF-hand_10: EF hand; 27.3 1.8E+02 0.0039 19.9 4.6 48 53-100 2-49 (51)
75 PF07864 DUF1651: Protein of u 27.1 41 0.0009 24.2 1.6 23 142-164 46-68 (75)
76 cd00383 trans_reg_C Effector d 26.8 1.3E+02 0.0028 21.4 4.2 56 65-121 20-76 (95)
77 cd03568 VHS_STAM VHS domain fa 26.4 3.5E+02 0.0076 21.9 7.6 46 86-131 73-126 (144)
78 COG2922 Smg Uncharacterized pr 26.4 58 0.0013 27.2 2.4 35 38-72 5-40 (157)
79 PF04659 Arch_fla_DE: Archaeal 26.2 1.2E+02 0.0025 23.5 4.0 52 168-220 22-86 (99)
80 cd05031 S-100A10_like S-100A10 25.6 1.2E+02 0.0027 22.1 4.0 30 86-115 24-59 (94)
81 PF04337 DUF480: Protein of un 25.4 68 0.0015 26.7 2.7 56 59-119 78-134 (148)
82 smart00549 TAFH TAF homology. 25.3 1.6E+02 0.0034 22.7 4.4 62 58-124 12-80 (92)
83 cd00086 homeodomain Homeodomai 25.3 1.5E+02 0.0033 19.0 4.1 38 32-74 9-46 (59)
84 PHA01083 hypothetical protein 24.9 1.1E+02 0.0024 25.5 3.9 47 51-101 42-88 (149)
85 cd04766 HTH_HspR Helix-Turn-He 24.4 94 0.002 22.8 3.1 43 55-121 47-89 (91)
86 PLN02222 phosphoinositide phos 24.1 1.8E+02 0.0039 29.4 5.8 63 35-100 24-90 (581)
87 cd05024 S-100A10 S-100A10: A s 23.7 3.3E+02 0.0072 20.7 8.2 68 34-102 6-78 (91)
88 smart00054 EFh EF-hand, calciu 23.1 1.2E+02 0.0026 15.3 2.8 16 85-100 13-28 (29)
89 KOG0034 Ca2+/calmodulin-depend 23.0 4.8E+02 0.01 22.3 10.3 83 53-135 84-175 (187)
90 KOG1575 Voltage-gated shaker-l 22.8 1.9E+02 0.004 27.3 5.4 55 53-121 258-313 (336)
91 cd03022 DsbA_HCCA_Iso DsbA fam 22.5 1.1E+02 0.0025 24.6 3.6 38 34-71 102-139 (192)
92 PF06992 Phage_lambda_P: Repli 22.5 1.1E+02 0.0025 27.2 3.8 31 90-120 66-96 (233)
93 PF08671 SinI: Anti-repressor 22.4 1E+02 0.0022 18.8 2.4 27 169-196 4-30 (30)
94 PF10036 RLL: Putative carniti 22.2 92 0.002 27.8 3.1 29 54-82 56-85 (249)
95 PF01023 S_100: S-100/ICaBP ty 21.9 1.5E+02 0.0032 19.3 3.3 30 34-63 4-35 (44)
96 PF00566 RabGAP-TBC: Rab-GTPas 21.6 4.4E+02 0.0095 21.3 7.2 29 132-161 165-193 (214)
97 PF07647 SAM_2: SAM domain (St 21.2 2.6E+02 0.0057 18.7 4.7 58 54-117 5-63 (66)
98 PRK09849 putative oxidoreducta 21.2 76 0.0016 32.7 2.7 31 59-91 370-400 (702)
99 KOG0037 Ca2+-binding protein, 21.0 5.8E+02 0.012 22.7 7.8 61 40-100 128-188 (221)
100 cd04752 Commd4 COMM_Domain con 20.8 4.1E+02 0.009 22.1 6.7 63 40-105 12-76 (174)
101 KOG3911 Nucleolar protein NOP5 20.7 6.7E+02 0.015 23.9 8.5 119 72-196 26-197 (378)
No 1
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.4e-65 Score=450.21 Aligned_cols=222 Identities=34% Similarity=0.625 Sum_probs=198.7
Q ss_pred CCcccccccCCCCCch--------h-hHHHhcCC------CCCChhhHHHHHHHHHHhcCCCC-CCCCHHHHHHHHHhhC
Q 027078 3 MRRSVSRKTGQTNSTD--------A-TDLFRSAS------SKASSKEMERIDNLFYSYANKSS-GMIDPEGIESLCSDIE 66 (228)
Q Consensus 3 ~~~~~~~~~~~~~~~~--------A-~d~y~~~~------~~~~~~~~~~l~~lFd~Y~d~~~-~~I~~dG~~~~~~DLg 66 (228)
|+-|++++..|.+.+- | .+.||.++ +.....+..+++++|.+|+|+++ +.|++|||.+||+|||
T Consensus 16 ~~~~~~~~~~s~~~~~~~dw~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg 95 (260)
T KOG3077|consen 16 MSFTASRKKTSLSCLAACDWNLKYAFNDSYYTNPQSLREESVQARVSEKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLG 95 (260)
T ss_pred cccccccchhhhhhhcccccccchhcccchhcchhHHHHhhhhccccHHHHHHHHHHhcCcccccccChHHHHHHHHHhC
Confidence 5667777755544222 5 34454443 22334678899999999999976 6999999999999999
Q ss_pred CCCCcHHHHHHHHhhcccccccccHHHHHHHhHHccCCcHHHHHHhhHHHHHHhCCcchhHHHHHhHhhhccCccccccc
Q 027078 67 VSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRADTVNKLKKALPDLEKEVKRPTNFQDFYAFAFRYCLTEEKQKSV 146 (228)
Q Consensus 67 v~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l~~dsi~~lk~~l~~l~~~l~d~~~Fk~~Y~f~F~f~~~~~~qk~L 146 (228)
|+|+|+++|||||+|+|++||+|||++|+.||.++||+|+++|++.|+.++..|+|++.|+++|+|||+|+++ +|||+|
T Consensus 96 ~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~l~~dS~d~lq~~l~~l~~~l~d~~~Fk~iY~faf~fa~e-~~qk~L 174 (260)
T KOG3077|consen 96 VEPEDISVLVLAWKLGAATMCEFSREEFLKGMTALGCDSIDKLQQRLDFLRSVLKDLEKFKSIYRFAFNFAKE-PGQKSL 174 (260)
T ss_pred CCchhHHHHHHHHHhccchhhhhhHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHccHHHhhHHHHhhhhhccC-cCcCcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999995 899999
Q ss_pred cHHhHHHHHhhhhCCCChhhHHHHHHHHHhcCCCCcCChhhHHHHHHHHhhcCCCCCCCCCCCCCchhhHHHHHHHHHhh
Q 027078 147 DIESVCELLGLVLGSQYRAQVDYLIEYLKIQSDYKVINMDQWMGFYRFCNEISFPDFNNYDPNLAWPLVLDNFVEWMKAK 226 (228)
Q Consensus 147 ~~d~Ai~~W~lll~~~~~~~l~~W~~Fl~~~~~~k~IskD~W~~~l~F~~~v~~~dls~YDe~~AWP~liDeFVe~~r~~ 226 (228)
++++||.||.|||+.++| .++.|++||.+ .+++.|+||||||+|+|++++. +++|||||+||||+||||||||+|.+
T Consensus 175 d~~~ai~~w~ll~~~~~p-ll~~w~~FL~~-~~~~~~~KDtW~~~l~Fs~~i~-~dlSnYDeegAWP~liDeFVe~~r~~ 251 (260)
T KOG3077|consen 175 DLETAISLWKLLFGQTPP-LLDQWIQFLKD-SPNRAISKDTWNLLLDFSKTID-PDLSNYDEEGAWPVLIDEFVEYLRDK 251 (260)
T ss_pred CHHHHHHHHHHHhCCCCc-hHHHHHHHHHh-CcCcccCcccHHHHHHHHHhcC-ccccCccccccchHHHHHHHHHHHHh
Confidence 999999999999988875 99999999997 5789999999999999999986 99999999999999999999999998
Q ss_pred CC
Q 027078 227 QT 228 (228)
Q Consensus 227 ~~ 228 (228)
++
T Consensus 252 ~~ 253 (260)
T KOG3077|consen 252 QS 253 (260)
T ss_pred cc
Confidence 64
No 2
>PF03556 Cullin_binding: Cullin binding; InterPro: IPR005176 The eukaryotic defective in cullin neddylation (DCN) protein family, may contribute to neddylation of cullin components of SCF-type E3 ubiquitin ligase complexes. These multi-protein complexes are required for polyubiquitination and subsequent degradation of target proteins by the 26S proteasome []. Proteins in the DCN family include: Yeast DCN1. Vertebrate DCN1-like protein 1. Vertebrate DCN1-like protein 2. Vertebrate DCN1-like protein 4. This entry represents a domain found within DCN family proteins. Its function is unknown but it has been suggested that it has the features of a basic helix-loop-helix leucine zipper (bHLH-ZIP) domain [].It is often found in association with a UBA-like domain (IPR009060 from INTERPRO).; PDB: 3TDI_A 2IS9_A 3O6B_E 3O2P_A 3BQ3_A 3TDZ_A 3TDU_B.
Probab=100.00 E-value=3.2e-45 Score=290.71 Aligned_cols=116 Identities=35% Similarity=0.747 Sum_probs=103.4
Q ss_pred HHHHHHhhHHHHHHhC-CcchhHHHHHhHhhhccCccccccccHHhHHHHHhhhhCCCChhhHHHHHHHHHhcCCCCcCC
Q 027078 106 VNKLKKALPDLEKEVK-RPTNFQDFYAFAFRYCLTEEKQKSVDIESVCELLGLVLGSQYRAQVDYLIEYLKIQSDYKVIN 184 (228)
Q Consensus 106 i~~lk~~l~~l~~~l~-d~~~Fk~~Y~f~F~f~~~~~~qk~L~~d~Ai~~W~lll~~~~~~~l~~W~~Fl~~~~~~k~Is 184 (228)
|++||++|++|+++|. |+++|++||+|||+|+|+ +|||+|++|+||+||++||+++..++++.|++||++ +++|+||
T Consensus 1 I~~lk~~l~~l~~~l~~d~~~F~~~Y~f~F~~~~~-~~qr~l~~e~Ai~~W~llf~~~~~~~l~~w~~Fl~~-~~~k~Is 78 (117)
T PF03556_consen 1 IDKLKQKLPELRKELRSDPEYFKKFYRFTFDFARE-EGQRSLPLETAIAYWRLLFSGRFFPLLDSWIEFLEE-KYKKAIS 78 (117)
T ss_dssp HHHHHHCHHHHHHHCCHSHHHHHHHHHHHHHHHS--TT-SSEEHHHHHHHHHHHTTTTSSCCHHHHHHHHHH-CT-SEEE
T ss_pred CHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhCC-cccCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHH-cCCcCcC
Confidence 6899999999999998 999999999999999995 789999999999999999998844699999999987 4789999
Q ss_pred hhhHHHHHHHHhhcCCCCCCCCCCCCCchhhHHHHHHHHH
Q 027078 185 MDQWMGFYRFCNEISFPDFNNYDPNLAWPLVLDNFVEWMK 224 (228)
Q Consensus 185 kD~W~~~l~F~~~v~~~dls~YDe~~AWP~liDeFVe~~r 224 (228)
||+|+|+++|+++++ +++++|||+||||+||||||||+|
T Consensus 79 kD~W~~~l~F~~~~~-~dls~Yde~~AWP~liDeFVe~~r 117 (117)
T PF03556_consen 79 KDTWNQFLDFFKTVD-EDLSNYDEEGAWPSLIDEFVEWLR 117 (117)
T ss_dssp HHHHHHHHHHHHH-H-CCHCC--TTSSS-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhcC-ccccCCCCCCCCcHHHHHHHHHhC
Confidence 999999999999996 999999999999999999999997
No 3
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=94.90 E-value=0.16 Score=32.66 Aligned_cols=61 Identities=11% Similarity=0.264 Sum_probs=51.3
Q ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCcHHHHHHHHhhcccccccccHHHHHHHh
Q 027078 38 IDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGL 98 (228)
Q Consensus 38 l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~ 98 (228)
+..+|..|....++.|+.+-+...+..+|..+.+..+-.+..++....-|.++.++|+..+
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678998875556789999999999999999887777778888888888999999998754
No 4
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=94.13 E-value=0.22 Score=37.27 Aligned_cols=70 Identities=14% Similarity=0.251 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhcC-CC-CCCCCHHHHHHHHHh-----hCCCCCcHHHHHHHHhhcccccccccHHHHHHHhHHccCC
Q 027078 35 MERIDNLFYSYAN-KS-SGMIDPEGIESLCSD-----IEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRAD 104 (228)
Q Consensus 35 ~~~l~~lFd~Y~d-~~-~~~I~~dG~~~~~~D-----Lgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l~~d 104 (228)
...|.+.|..|-+ .. ++.|+.+-+.+++.. +|..+....+--+...+....-|.|+-++|+..|..+.+-
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~~ 83 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSIA 83 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence 4578889999975 42 479999999999886 6778776666666667788889999999999999876653
No 5
>PTZ00183 centrin; Provisional
Probab=94.11 E-value=1.1 Score=35.20 Aligned_cols=69 Identities=16% Similarity=0.281 Sum_probs=55.5
Q ss_pred hhhHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCcHHHHHHHHhhcccccccccHHHHHHHhHH
Q 027078 32 SKEMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKA 100 (228)
Q Consensus 32 ~~~~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~ 100 (228)
+...+++.++|..+-...++.|+.+-+..++.-+|..+....+-.+.-.+....-|.|+.++|+..+..
T Consensus 13 ~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 81 (158)
T PTZ00183 13 EDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTK 81 (158)
T ss_pred HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHH
Confidence 446678899998875444578999999999999998877666666666677778899999999998765
No 6
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=93.96 E-value=0.14 Score=33.96 Aligned_cols=50 Identities=16% Similarity=0.325 Sum_probs=45.7
Q ss_pred CCCCHHHHHHHHHhhCCC-CCcHHHHHHHHhhcccccccccHHHHHHHhHH
Q 027078 51 GMIDPEGIESLCSDIEVS-HTDVRILMLAWKMKAEKQGYFTLEEWRRGLKA 100 (228)
Q Consensus 51 ~~I~~dG~~~~~~DLgv~-~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~ 100 (228)
+.|+.+.+.+.+..+|+. +.+-.+=.|...+-...-|.|+.+||+..|+.
T Consensus 3 G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 3 GKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 578999999999889999 98888999999999999999999999998875
No 7
>PTZ00184 calmodulin; Provisional
Probab=93.81 E-value=2.4 Score=32.69 Aligned_cols=68 Identities=10% Similarity=0.258 Sum_probs=56.5
Q ss_pred hhHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCcHHHHHHHHhhcccccccccHHHHHHHhHH
Q 027078 33 KEMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKA 100 (228)
Q Consensus 33 ~~~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~ 100 (228)
...+++.+.|..+-...++.|+.+-+..++..+|.++.+..+-.+.-.+....-|.++.++|+..+..
T Consensus 8 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 75 (149)
T PTZ00184 8 EQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMAR 75 (149)
T ss_pred HHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHH
Confidence 45677888998874444578999999999999999988777777777888888899999999998875
No 8
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=93.80 E-value=0.32 Score=36.45 Aligned_cols=68 Identities=9% Similarity=0.207 Sum_probs=53.0
Q ss_pred hhhHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCcHHHHHHHHhhcccccccccHHHHHHHhHHc
Q 027078 32 SKEMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKAL 101 (228)
Q Consensus 32 ~~~~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l 101 (228)
+.....+.+.|..+-...++.|+.+-+.+.+..+|++.+.+.-+. -.+....-|.|+.++|+..|..+
T Consensus 6 ~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~--~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 6 PEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIW--NLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHH--HHhcCCCCCCcCHHHHHHHHHHH
Confidence 346678899999986555689999999999999998766555433 34566678999999999988764
No 9
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=93.39 E-value=0.42 Score=32.39 Aligned_cols=62 Identities=15% Similarity=0.247 Sum_probs=46.4
Q ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCcHHHHHHHHhhcccccccccHHHHHHHhHHcc
Q 027078 39 DNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALR 102 (228)
Q Consensus 39 ~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l~ 102 (228)
.++|..+-...++.|+.+.+.+++..+|++.+.+.- +...+....-|.|+.++|+..|....
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~--i~~~~d~~~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQ--IWDLADTDKDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHH--HHHHhcCCCCCcCCHHHHHHHHHHHH
Confidence 357888744445889999999999999985444333 34456667789999999999987643
No 10
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.25 E-value=0.11 Score=46.78 Aligned_cols=85 Identities=11% Similarity=0.042 Sum_probs=64.0
Q ss_pred hHHHHHhHhhhccCccccccccHHhHHHHHhhhhCCCChhhHHHHHHHHHhcCCCCcCChhhHHHHHHHHhhcCCCCCCC
Q 027078 126 FQDFYAFAFRYCLTEEKQKSVDIESVCELLGLVLGSQYRAQVDYLIEYLKIQSDYKVINMDQWMGFYRFCNEISFPDFNN 205 (228)
Q Consensus 126 Fk~~Y~f~F~f~~~~~~qk~L~~d~Ai~~W~lll~~~~~~~l~~W~~Fl~~~~~~k~IskD~W~~~l~F~~~v~~~dls~ 205 (228)
+.-.|...+.|+.+ -|....++.++|-.|++- +.+.. .+..|. |+..-+.-..+|-|+|.+.++|.+++- .|++.
T Consensus 80 ~~i~~dgi~~fc~d-lg~~p~~i~~LvlAwkl~-A~~m~-~Fsr~e-f~~g~~~l~~dS~d~lq~~l~~l~~~l-~d~~~ 154 (260)
T KOG3077|consen 80 NLIGPDGIEKFCED-LGVEPEDISVLVLAWKLG-AATMC-EFSREE-FLKGMTALGCDSIDKLQQRLDFLRSVL-KDLEK 154 (260)
T ss_pred cccChHHHHHHHHH-hCCCchhHHHHHHHHHhc-cchhh-hhhHHH-HHHHHHHcCCCcHHHHHHHHHHHHHHH-ccHHH
Confidence 88899999999985 799999999999999998 66554 333332 222122346899999999999998875 58887
Q ss_pred CCCCCCchhh
Q 027078 206 YDPNLAWPLV 215 (228)
Q Consensus 206 YDe~~AWP~l 215 (228)
|++-.+||..
T Consensus 155 Fk~iY~faf~ 164 (260)
T KOG3077|consen 155 FKSIYRFAFN 164 (260)
T ss_pred hhHHHHhhhh
Confidence 7766555543
No 11
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=93.08 E-value=0.44 Score=35.47 Aligned_cols=70 Identities=16% Similarity=0.229 Sum_probs=51.8
Q ss_pred hhHHHHHHHHHHhcCCC--CCCCCHHHHHHHHH-hhCCCCC----cHHHHHHHHhhcccccccccHHHHHHHhHHcc
Q 027078 33 KEMERIDNLFYSYANKS--SGMIDPEGIESLCS-DIEVSHT----DVRILMLAWKMKAEKQGYFTLEEWRRGLKALR 102 (228)
Q Consensus 33 ~~~~~l~~lFd~Y~d~~--~~~I~~dG~~~~~~-DLgv~~e----d~~~LvLa~~l~a~~~g~itr~eF~~g~~~l~ 102 (228)
.....|..+|.+|+..+ .+.|+.+.+..++. .+|-.+. +..+=-+...+....-|.|+-++|+..+..+.
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~ 81 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVG 81 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 35667889999999764 47899999999997 4443332 34444455556777789999999999988753
No 12
>PTZ00183 centrin; Provisional
Probab=92.93 E-value=0.61 Score=36.74 Aligned_cols=81 Identities=21% Similarity=0.237 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhC--CCCCcHHHHHHHHhhcccccccccHHHHHHHhHHccC-CcHHHHHH
Q 027078 35 MERIDNLFYSYANKSSGMIDPEGIESLCSDIE--VSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRA-DTVNKLKK 111 (228)
Q Consensus 35 ~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLg--v~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l~~-dsi~~lk~ 111 (228)
...+..+|..+-...++.|+.+....++...- ..+++. +--+...+....-|.|++++|...+..+|. -+-+.++.
T Consensus 52 ~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~-l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~ 130 (158)
T PTZ00183 52 KEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREE-ILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQE 130 (158)
T ss_pred HHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHH-HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHH
Confidence 45677777777544456788887777665431 122221 212223445555788888888888887663 23344444
Q ss_pred hhHHH
Q 027078 112 ALPDL 116 (228)
Q Consensus 112 ~l~~l 116 (228)
.+..+
T Consensus 131 ~~~~~ 135 (158)
T PTZ00183 131 MIDEA 135 (158)
T ss_pred HHHHh
Confidence 44433
No 13
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=92.59 E-value=0.57 Score=35.08 Aligned_cols=70 Identities=17% Similarity=0.265 Sum_probs=55.3
Q ss_pred hhHHHHHHHHHHhcCC-C-CCCCCHHHHHHHHHh---hCCCCCcHHHHHHHHhhcccccccccHHHHHHHhHHcc
Q 027078 33 KEMERIDNLFYSYANK-S-SGMIDPEGIESLCSD---IEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALR 102 (228)
Q Consensus 33 ~~~~~l~~lFd~Y~d~-~-~~~I~~dG~~~~~~D---Lgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l~ 102 (228)
.....|.++|.+|... . .+.|+.+.+.+++.. +|..+..-.+--+-..+....-|.|+-+||+.-|..+-
T Consensus 7 ~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 7 QAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 3456788999999863 2 468999999999974 68777666666666677888889999999998887653
No 14
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=92.23 E-value=0.52 Score=32.24 Aligned_cols=62 Identities=15% Similarity=0.307 Sum_probs=44.2
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCc--HH--HHHHHHhhcccccccccHHHHHHHh
Q 027078 37 RIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTD--VR--ILMLAWKMKAEKQGYFTLEEWRRGL 98 (228)
Q Consensus 37 ~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed--~~--~LvLa~~l~a~~~g~itr~eF~~g~ 98 (228)
+|.++|+.|=...++.|+.+-+.+++..++....+ +. +-.+...+-...-|.|+.+||++.|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 57889999966566899999999999999987522 11 1122334445567999999998754
No 15
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=91.65 E-value=1.2 Score=32.40 Aligned_cols=69 Identities=14% Similarity=0.225 Sum_probs=51.7
Q ss_pred hhHHHHHHHHHHhcC--CCCCCCCHHHHHHHHHh-hCCCC----CcHHHHHHHHhhcccccccccHHHHHHHhHHc
Q 027078 33 KEMERIDNLFYSYAN--KSSGMIDPEGIESLCSD-IEVSH----TDVRILMLAWKMKAEKQGYFTLEEWRRGLKAL 101 (228)
Q Consensus 33 ~~~~~l~~lFd~Y~d--~~~~~I~~dG~~~~~~D-Lgv~~----ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l 101 (228)
...+.+.+.|..|-. ..++.|+.+.+.+++.. +|..+ ....+=-+.-.+....-|.|+-++|+..+..+
T Consensus 5 ~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 456778889999976 45589999999999986 56433 24444445556677778999999999988764
No 16
>PTZ00184 calmodulin; Provisional
Probab=90.97 E-value=1.2 Score=34.42 Aligned_cols=97 Identities=12% Similarity=0.217 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhC-CCCCcHHHHHHHHhhcccccccccHHHHHHHhHHccCC-cHHHHHHh
Q 027078 35 MERIDNLFYSYANKSSGMIDPEGIESLCSDIE-VSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRAD-TVNKLKKA 112 (228)
Q Consensus 35 ~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLg-v~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l~~d-si~~lk~~ 112 (228)
...+.++|..+-.+.++.|+.+-..+++.... .......+-.+...+....-|.+++++|...+...|.. +-+.++..
T Consensus 46 ~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~ 125 (149)
T PTZ00184 46 EAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEM 125 (149)
T ss_pred HHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHH
Confidence 45677788877655557888887766665432 12221222233334445567999999999999888764 33444444
Q ss_pred hHHHHHHhCCcchhHHHHH
Q 027078 113 LPDLEKEVKRPTNFQDFYA 131 (228)
Q Consensus 113 l~~l~~~l~d~~~Fk~~Y~ 131 (228)
+..+...-.+.-.|.+|..
T Consensus 126 ~~~~d~~~~g~i~~~ef~~ 144 (149)
T PTZ00184 126 IREADVDGDGQINYEEFVK 144 (149)
T ss_pred HHhcCCCCCCcCcHHHHHH
Confidence 4433221112223555554
No 17
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=89.91 E-value=2.2 Score=32.00 Aligned_cols=70 Identities=14% Similarity=0.176 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHHhcCCCC--CCCCHHHHHHHHHhh-----CCCCCcHHHHHHHHhhcccccccccHHHHHHHhHHcc
Q 027078 33 KEMERIDNLFYSYANKSS--GMIDPEGIESLCSDI-----EVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALR 102 (228)
Q Consensus 33 ~~~~~l~~lFd~Y~d~~~--~~I~~dG~~~~~~DL-----gv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l~ 102 (228)
.....|.++|.+|.+.++ +.|+.+.+..+++.- +-..++..+--+.-.+....=|.|+-+||+.-+..+-
T Consensus 6 ~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 6 RCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 456788999999987654 379999999999975 3223333444455566777789999999998887754
No 18
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=89.80 E-value=1.8 Score=32.40 Aligned_cols=69 Identities=13% Similarity=0.238 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHhcCCCCC--CCCHHHHHHHHHh-h----CCCCCcHHHHHHHHhhcccccccccHHHHHHHhHHcc
Q 027078 34 EMERIDNLFYSYANKSSG--MIDPEGIESLCSD-I----EVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALR 102 (228)
Q Consensus 34 ~~~~l~~lFd~Y~d~~~~--~I~~dG~~~~~~D-L----gv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l~ 102 (228)
....|.+.|.+|.+.+++ .|+.+-+.+++.. + +-.+.+-.+=-+...+....-|.|+-+||+.-+..+-
T Consensus 8 a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 8 AMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 455666779999976553 5999999999977 3 3333444555566677777789999999999887764
No 19
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=88.88 E-value=3.7 Score=33.06 Aligned_cols=72 Identities=14% Similarity=0.272 Sum_probs=63.1
Q ss_pred hhHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCcHHHHHHHHhhcccccccccHHHHHHHhHHccCC
Q 027078 33 KEMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRAD 104 (228)
Q Consensus 33 ~~~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l~~d 104 (228)
.....+.+.|..+-...++.|..+=+...+..||.+|....+-.+...+....-|.|+.++|+.-|...+..
T Consensus 5 ~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~ 76 (151)
T KOG0027|consen 5 EQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEE 76 (151)
T ss_pred HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcc
Confidence 345778889999965556899999999999999999999999999999999999999999999999876653
No 20
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=88.08 E-value=3.7 Score=30.91 Aligned_cols=69 Identities=12% Similarity=0.138 Sum_probs=53.1
Q ss_pred hhHHHHHHHHHHhcC-CCCCCCCHHHHHHHHHh-hCCCCCc-HHHHHHHHhhcccccccccHHHHHHHhHHc
Q 027078 33 KEMERIDNLFYSYAN-KSSGMIDPEGIESLCSD-IEVSHTD-VRILMLAWKMKAEKQGYFTLEEWRRGLKAL 101 (228)
Q Consensus 33 ~~~~~l~~lFd~Y~d-~~~~~I~~dG~~~~~~D-Lgv~~ed-~~~LvLa~~l~a~~~g~itr~eF~~g~~~l 101 (228)
.....|.+.|..|.. ..++.|+.+.+..++.. ||-...+ -.+=-+...+....=|.|+-+||+.-+..+
T Consensus 5 ~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 5 KAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 346678899999976 55689999999999998 9844444 344444455667778999999999888775
No 21
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=87.96 E-value=1.9 Score=41.56 Aligned_cols=82 Identities=21% Similarity=0.277 Sum_probs=61.2
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCcHHHHHHHHhhcccccccccHHHHHHHhHHccCCcHHHHHHhhHH
Q 027078 36 ERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRADTVNKLKKALPD 115 (228)
Q Consensus 36 ~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l~~dsi~~lk~~l~~ 115 (228)
.+|-.+|.+-.-..+..|++..|.++|.||||+++|...--+...+--..-+.|..+||.+-+.-.- .+.|..-+..
T Consensus 82 ~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p---~s~i~di~~~ 158 (463)
T KOG0036|consen 82 LELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYP---ESDLEDIYDF 158 (463)
T ss_pred HHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCC---hhHHHHHHHh
Confidence 4555666665544568899999999999999999999888888888777788999999998665543 4444444555
Q ss_pred HHHHh
Q 027078 116 LEKEV 120 (228)
Q Consensus 116 l~~~l 120 (228)
|+..+
T Consensus 159 W~h~~ 163 (463)
T KOG0036|consen 159 WRHVL 163 (463)
T ss_pred hhhhe
Confidence 55443
No 22
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=84.70 E-value=2 Score=31.09 Aligned_cols=63 Identities=17% Similarity=0.360 Sum_probs=44.3
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHhh----CCCCCcHHHHHHHHhhc--ccccccccHHHHHHHhHH
Q 027078 37 RIDNLFYSYANKSSGMIDPEGIESLCSDI----EVSHTDVRILMLAWKMK--AEKQGYFTLEEWRRGLKA 100 (228)
Q Consensus 37 ~l~~lFd~Y~d~~~~~I~~dG~~~~~~DL----gv~~ed~~~LvLa~~l~--a~~~g~itr~eF~~g~~~ 100 (228)
.|..+|.+|.. +...|+.+++.+|+.+- .++++.+.-++--+.-. ....+.+|.++|+.-|..
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 36889999987 56899999999999643 34455555554443221 234689999999988754
No 23
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=83.95 E-value=8.4 Score=28.69 Aligned_cols=69 Identities=12% Similarity=0.219 Sum_probs=52.3
Q ss_pred hhHHHHHHHHHHhcC-CCCC-CCCHHHHHHHHHh-----hCCCCCcHHHHHHHHhhcccccccccHHHHHHHhHHc
Q 027078 33 KEMERIDNLFYSYAN-KSSG-MIDPEGIESLCSD-----IEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKAL 101 (228)
Q Consensus 33 ~~~~~l~~lFd~Y~d-~~~~-~I~~dG~~~~~~D-----Lgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l 101 (228)
.....|.+.|..|.+ ..++ .|+.+-+..++.. +|-.++.-.+=-+.-.+....-|.|+-++|+.-+..+
T Consensus 5 ~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 5 KAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 346678899999964 3345 5999999999999 9977654444444456677788999999999876654
No 24
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=82.99 E-value=5.8 Score=33.34 Aligned_cols=67 Identities=15% Similarity=0.263 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCcHHHHHHHHhhcccccccccHHHHHHHhHH
Q 027078 34 EMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKA 100 (228)
Q Consensus 34 ~~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~ 100 (228)
...+|...|.-|=...++.|+.+-+...+.-||-...+-++=-|.-.+.-..-|.|+.++|++.+..
T Consensus 90 ~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 90 KEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred cHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 3567777888886666678888888888888888877766666666666666788888888887654
No 25
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=82.63 E-value=10 Score=27.86 Aligned_cols=68 Identities=15% Similarity=0.209 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHhcCC-CCC-CCCHHHHHHHHHh-hCC----CCCcHHHHHHHHhhcccccccccHHHHHHHhHHc
Q 027078 34 EMERIDNLFYSYANK-SSG-MIDPEGIESLCSD-IEV----SHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKAL 101 (228)
Q Consensus 34 ~~~~l~~lFd~Y~d~-~~~-~I~~dG~~~~~~D-Lgv----~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l 101 (228)
-...|.+.|..|-+. .++ .|+.+-+.+++.. +|. .|....+=-+...+....-|.|+-++|+.-+..+
T Consensus 7 ~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 7 AMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 346788999999633 345 5999999999975 653 4444455555556677888999999999877764
No 26
>TIGR01446 DnaD_dom DnaD and phage-associated domain. This model represents the conserved domain of DnaD, part of Bacillus subtilis replication restart primosome, and of a number of phage-associated proteins. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria.
Probab=82.17 E-value=2.6 Score=29.79 Aligned_cols=56 Identities=13% Similarity=0.084 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHhhCCCCCcHHHHHHHHhh--cccccccccHHHHHHHhHHccCCcHHHHH
Q 027078 52 MIDPEGIESLCSDIEVSHTDVRILMLAWKM--KAEKQGYFTLEEWRRGLKALRADTVNKLK 110 (228)
Q Consensus 52 ~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l--~a~~~g~itr~eF~~g~~~l~~dsi~~lk 110 (228)
....+-+..++++.|.+++ ++..++-+-+ +..+++.+ +.-+..|++-|+.|+++.+
T Consensus 15 ~~e~~~i~~~~~~~~~~~e-vI~~ai~~a~~~~~~~~~Yi--~~Il~~W~~~gi~T~e~~~ 72 (73)
T TIGR01446 15 PFEMEDLKYWLDEFGNSPE-LIKEALKEAVSNNKANYKYI--DAILNNWKNNGIKTVEDVE 72 (73)
T ss_pred HHHHHHHHHHHHHhCCCHH-HHHHHHHHHHHcCCCCHHHH--HHHHHHHHHcCCCCHHHHh
Confidence 3556778888888887744 5555555544 33444433 3667779999999999875
No 27
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=81.93 E-value=15 Score=30.93 Aligned_cols=86 Identities=15% Similarity=0.285 Sum_probs=67.5
Q ss_pred hhhHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCcHHHHHHHHhhcccccccccHHHHHHHhHHcc--CCcHHHH
Q 027078 32 SKEMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALR--ADTVNKL 109 (228)
Q Consensus 32 ~~~~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l~--~dsi~~l 109 (228)
....+++.+.|..+--..++.|+-+-+...+.-||.+|.+..+.-|.--+.+ .-|.++-.+|+..|...- -++-++|
T Consensus 16 ~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel 94 (160)
T COG5126 16 EEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEEL 94 (160)
T ss_pred HHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHH
Confidence 3355666777777755556899999999999999999999999999999988 788999999999997754 3456666
Q ss_pred HHhhHHHHH
Q 027078 110 KKALPDLEK 118 (228)
Q Consensus 110 k~~l~~l~~ 118 (228)
+....-.+.
T Consensus 95 ~~aF~~fD~ 103 (160)
T COG5126 95 REAFKLFDK 103 (160)
T ss_pred HHHHHHhCC
Confidence 666655543
No 28
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=81.13 E-value=24 Score=29.99 Aligned_cols=106 Identities=20% Similarity=0.274 Sum_probs=73.6
Q ss_pred hhhHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCcHHHHHHHHhhcccccccccHHHHHHHhHHc--cCCcHHHH
Q 027078 32 SKEMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKAL--RADTVNKL 109 (228)
Q Consensus 32 ~~~~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l--~~dsi~~l 109 (228)
+....++..-|+-+-....+.|+.+++--=.-.||.+|..-.++-|.--+.....|.|+-++|+..|... .-+|.+.+
T Consensus 29 ~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi 108 (172)
T KOG0028|consen 29 EEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEI 108 (172)
T ss_pred HHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHH
Confidence 3344667777777654455899999996666689999999999988888888889999999999998652 23688888
Q ss_pred HHhhHHHHHHhCCcchhHHHHHhHhhhc
Q 027078 110 KKALPDLEKEVKRPTNFQDFYAFAFRYC 137 (228)
Q Consensus 110 k~~l~~l~~~l~d~~~Fk~~Y~f~F~f~ 137 (228)
+..+...+..=.-.-.++.|-+-++.++
T Consensus 109 ~~afrl~D~D~~Gkis~~~lkrvakeLg 136 (172)
T KOG0028|consen 109 KKAFRLFDDDKTGKISQRNLKRVAKELG 136 (172)
T ss_pred HHHHHcccccCCCCcCHHHHHHHHHHhC
Confidence 7776543332221123444444444443
No 29
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=77.27 E-value=13 Score=29.93 Aligned_cols=71 Identities=21% Similarity=0.314 Sum_probs=57.0
Q ss_pred hhHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCc----HHHHHHHHh-hcccccccccHHHHHHHhHHccC
Q 027078 33 KEMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTD----VRILMLAWK-MKAEKQGYFTLEEWRRGLKALRA 103 (228)
Q Consensus 33 ~~~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed----~~~LvLa~~-l~a~~~g~itr~eF~~g~~~l~~ 103 (228)
.+...+..+++++-...++.|+.+....++..++..... ...|.=|+. +-....|.||.+|+..-|..+|-
T Consensus 41 ~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~ 116 (151)
T KOG0027|consen 41 PTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGE 116 (151)
T ss_pred CCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCC
Confidence 456788899999976666899999999999988887654 335666654 46667899999999999999884
No 30
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=76.30 E-value=12 Score=30.90 Aligned_cols=98 Identities=20% Similarity=0.368 Sum_probs=60.3
Q ss_pred HHHHHHHhcC---CCCCCCCHHHHHHHHHhhCCCC---CcHHHHHHHHhhcccccccccHHHHHHHhHHc----cC--Cc
Q 027078 38 IDNLFYSYAN---KSSGMIDPEGIESLCSDIEVSH---TDVRILMLAWKMKAEKQGYFTLEEWRRGLKAL----RA--DT 105 (228)
Q Consensus 38 l~~lFd~Y~d---~~~~~I~~dG~~~~~~DLgv~~---ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l----~~--ds 105 (228)
|+++|..|+. .....|+.....++|.|.||=. ....+=++-.++.+..-..|+-++|+..+..+ ++ ++
T Consensus 1 L~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~~~~~~~~~ 80 (154)
T PF05517_consen 1 LEAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAEKKGKDKSS 80 (154)
T ss_dssp HHHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHHHHSCCCTH
T ss_pred CHHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHhhccccc
Confidence 6789999953 2346799999999999999942 23333344556777776679999999998765 33 26
Q ss_pred HHHHHHhh-----H--------HHHHHhCCcchhHHHHHhHhh
Q 027078 106 VNKLKKAL-----P--------DLEKEVKRPTNFQDFYAFAFR 135 (228)
Q Consensus 106 i~~lk~~l-----~--------~l~~~l~d~~~Fk~~Y~f~F~ 135 (228)
.+++...| | ...+.|.|++.|.-+|+--|+
T Consensus 81 ~~~~~~kl~~~~~P~~~g~~~~~~v~rltD~s~YTG~hk~rf~ 123 (154)
T PF05517_consen 81 AEELKEKLTAGGGPSASGATKAGAVDRLTDKSTYTGSHKERFD 123 (154)
T ss_dssp HHHHHHHHHTT--SSSSS-TTS------SSSS-STTS---SS-
T ss_pred HHHHHHHHHccCccccccccccccccccCCCCccchhhhhcCC
Confidence 77777776 1 112234577778888877777
No 31
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=73.69 E-value=7.3 Score=30.23 Aligned_cols=66 Identities=15% Similarity=0.367 Sum_probs=51.4
Q ss_pred hhhHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCcHHHHHHHHhh-cccccccccHHHHHHHhHHc
Q 027078 32 SKEMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKM-KAEKQGYFTLEEWRRGLKAL 101 (228)
Q Consensus 32 ~~~~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l-~a~~~g~itr~eF~~g~~~l 101 (228)
+.+.++..++|+... +.++.|+.+.+..++..-|++.+.+.. .|-| -...-|.++++||+-+|+-.
T Consensus 6 ~~e~~~y~~~F~~l~-~~~g~isg~~a~~~f~~S~L~~~~L~~---IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 6 PEEKQKYDQIFQSLD-PQDGKISGDQAREFFMKSGLPRDVLAQ---IWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp CCHHHHHHHHHHCTS-SSTTEEEHHHHHHHHHHTTSSHHHHHH---HHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCCeEeHHHHHHHHHHcCCCHHHHHH---HHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 457788899999875 456789999999999999998754433 3444 45668999999999999764
No 32
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=73.01 E-value=7.2 Score=25.52 Aligned_cols=47 Identities=21% Similarity=0.452 Sum_probs=28.4
Q ss_pred cccccHHHHHHHhHHccCC--cHHHHHHhhHHHHHHhCCcchhHHHHHh
Q 027078 86 QGYFTLEEWRRGLKALRAD--TVNKLKKALPDLEKEVKRPTNFQDFYAF 132 (228)
Q Consensus 86 ~g~itr~eF~~g~~~l~~d--si~~lk~~l~~l~~~l~d~~~Fk~~Y~f 132 (228)
-|.||+++|...+..+|.. |.+.+...+...+..=..--.|.+|..+
T Consensus 2 ~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~ 50 (54)
T PF13833_consen 2 DGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISM 50 (54)
T ss_dssp SSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHH
T ss_pred cCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHH
Confidence 4899999999999887766 4444444444443332222345555543
No 33
>PF14658 EF-hand_9: EF-hand domain
Probab=72.11 E-value=11 Score=27.12 Aligned_cols=51 Identities=10% Similarity=0.183 Sum_probs=46.2
Q ss_pred CCCCCHHHHHHHHHhhCC-CCCcHHHHHHHHhhccccc-ccccHHHHHHHhHH
Q 027078 50 SGMIDPEGIESLCSDIEV-SHTDVRILMLAWKMKAEKQ-GYFTLEEWRRGLKA 100 (228)
Q Consensus 50 ~~~I~~dG~~~~~~DLgv-~~ed~~~LvLa~~l~a~~~-g~itr~eF~~g~~~ 100 (228)
.+.|-+.-|..|+..+|- +|++..+=-|+-.+--..- |.+.++.|+.-|+.
T Consensus 12 tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 12 TGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred CceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 378999999999999999 9999999999999987777 99999999998875
No 34
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=71.80 E-value=33 Score=33.31 Aligned_cols=91 Identities=22% Similarity=0.249 Sum_probs=73.8
Q ss_pred hhHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCC-CCcHHHHHHHHhhcccccccccHHHHHHHhHHc----------
Q 027078 33 KEMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVS-HTDVRILMLAWKMKAEKQGYFTLEEWRRGLKAL---------- 101 (228)
Q Consensus 33 ~~~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~-~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l---------- 101 (228)
.-..++..+|+.+-...+..++.+.+.+-++.|++. |..-..=.|...+.+..-|...-+||.+-+.+-
T Consensus 11 er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~l~~~F~~ 90 (463)
T KOG0036|consen 11 ERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKELELYRIFQS 90 (463)
T ss_pred HHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhHHHHHHHHhh
Confidence 345678899999977666899999999999999999 888788888899999999999999999987542
Q ss_pred ------cCCcHHHHHHhhHHHHHHhCCc
Q 027078 102 ------RADTVNKLKKALPDLEKEVKRP 123 (228)
Q Consensus 102 ------~~dsi~~lk~~l~~l~~~l~d~ 123 (228)
|+-.++.+...|.++-.+|.|.
T Consensus 91 iD~~hdG~i~~~Ei~~~l~~~gi~l~de 118 (463)
T KOG0036|consen 91 IDLEHDGKIDPNEIWRYLKDLGIQLSDE 118 (463)
T ss_pred hccccCCccCHHHHHHHHHHhCCccCHH
Confidence 4456777777777776666543
No 35
>PLN02964 phosphatidylserine decarboxylase
Probab=71.61 E-value=23 Score=36.05 Aligned_cols=81 Identities=15% Similarity=0.160 Sum_probs=54.5
Q ss_pred hhHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhC-CCCCcHH---HHHHHHhhcccccccccHHHHHHHhHHccC-CcHH
Q 027078 33 KEMERIDNLFYSYANKSSGMIDPEGIESLCSDIE-VSHTDVR---ILMLAWKMKAEKQGYFTLEEWRRGLKALRA-DTVN 107 (228)
Q Consensus 33 ~~~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLg-v~~ed~~---~LvLa~~l~a~~~g~itr~eF~~g~~~l~~-dsi~ 107 (228)
.+...+.+.|+.+-...++.| +...+..|| ++|+... +--+...+....-|.|+.+||+..|..++. .+-+
T Consensus 140 kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seE 215 (644)
T PLN02964 140 QEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAAN 215 (644)
T ss_pred HHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHH
Confidence 355677778887754434455 777788999 5887765 233333456666799999999999988774 4555
Q ss_pred HHHHhhHHHH
Q 027078 108 KLKKALPDLE 117 (228)
Q Consensus 108 ~lk~~l~~l~ 117 (228)
.++.....++
T Consensus 216 EL~eaFk~fD 225 (644)
T PLN02964 216 KKEELFKAAD 225 (644)
T ss_pred HHHHHHHHhC
Confidence 5665555544
No 36
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=70.83 E-value=5.4 Score=23.53 Aligned_cols=30 Identities=20% Similarity=0.459 Sum_probs=19.7
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHH-hhC
Q 027078 37 RIDNLFYSYANKSSGMIDPEGIESLCS-DIE 66 (228)
Q Consensus 37 ~l~~lFd~Y~d~~~~~I~~dG~~~~~~-DLg 66 (228)
+|.++|+.|=.+.++.|+.+-+...+. .||
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 356777777444456777777777777 565
No 37
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=68.26 E-value=3.8 Score=24.46 Aligned_cols=19 Identities=26% Similarity=0.520 Sum_probs=13.2
Q ss_pred ccccccccHHHHHHHhHHc
Q 027078 83 AEKQGYFTLEEWRRGLKAL 101 (228)
Q Consensus 83 a~~~g~itr~eF~~g~~~l 101 (228)
...-|.|+.+||+..|++|
T Consensus 11 ~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 11 KDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp TTSSSEEEHHHHHHHHHHT
T ss_pred CCCCCcCCHHHHHHHHHhC
Confidence 3445778888888877654
No 38
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=66.39 E-value=26 Score=29.18 Aligned_cols=67 Identities=15% Similarity=0.240 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCcHHHHHHHHhhccc--ccccccHHHHHHHhHH
Q 027078 34 EMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAE--KQGYFTLEEWRRGLKA 100 (228)
Q Consensus 34 ~~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~--~~g~itr~eF~~g~~~ 100 (228)
....+.++|+-|-...+++|+...+.--+..||.+|.+..++-..-..... ++-.++-|+|+--.+.
T Consensus 9 ~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~ 77 (152)
T KOG0030|consen 9 QMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQ 77 (152)
T ss_pred hHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHH
Confidence 456777777777555557899999999999999999998888777666666 3466777777765544
No 39
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=64.37 E-value=48 Score=26.13 Aligned_cols=62 Identities=13% Similarity=0.231 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCcHHHHHHHHhhcccccccccHHHHHHHh
Q 027078 33 KEMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGL 98 (228)
Q Consensus 33 ~~~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~ 98 (228)
....+|.-.|.++=...++.|+.+=+..++ +.+....+--+...+.+..=|.||.+||..++
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 456778899999944445789999999887 44444444455666677888999999999988
No 40
>PRK10391 oriC-binding nucleoid-associated protein; Provisional
Probab=59.04 E-value=19 Score=26.38 Aligned_cols=40 Identities=13% Similarity=0.353 Sum_probs=31.9
Q ss_pred cHHHHHHHhHHccCCcHHHHHHhhHHHHHHhCCcchhHHHHH
Q 027078 90 TLEEWRRGLKALRADTVNKLKKALPDLEKEVKRPTNFQDFYA 131 (228)
Q Consensus 90 tr~eF~~g~~~l~~dsi~~lk~~l~~l~~~l~d~~~Fk~~Y~ 131 (228)
|+.+|+-.++ +|+|++.|-+.+..+...|+++..-..||.
T Consensus 2 tk~eyLlkfR--kcss~eTLEkv~e~~~y~L~~~~e~~~f~~ 41 (71)
T PRK10391 2 TVQDYLLKFR--KISSLESLEKLFDHLNYTLTDDQEIINMYR 41 (71)
T ss_pred cHHHHHHHHH--hcCcHHHHHHHHHHhhcccCCHHHHHHHHH
Confidence 6788886554 599999999999999999998665555554
No 41
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=57.31 E-value=58 Score=27.74 Aligned_cols=60 Identities=17% Similarity=0.308 Sum_probs=35.6
Q ss_pred HHHHhcCCCCCCCCHHHHHHHHHhhCCCCCcHHHHHHHHhhcccccccccHHHHHHHhHH
Q 027078 41 LFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKA 100 (228)
Q Consensus 41 lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~ 100 (228)
.|.-..+...+.|.+.-+-+.+..||=+..|-.+--...-..--.-|+|+.+||+..|+.
T Consensus 111 afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 111 AFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 333333333456777777777777777766666554444444444577777777766653
No 42
>PF07531 TAFH: NHR1 homology to TAF; InterPro: IPR003894 The TAF homology (TAFH) or Nervy homology region 1 (NHR1) domain is a domain of 95-100 amino acids present in eukaryotic proteins of the MTG/ETO family and whereof the core ~75-80 residues occur in TAF proteins. The transcription initiation TFIID complex is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). The TAFH/NHR1 domain is named after fruit fly TATA-box-associated factor 110 (TAF110), human TAF105 and TAF130, and the fruit fly protein Nervy, which is a homologue of human MTG8/ETO [, ]. The human eight twenty-one (ETO or MTG8) and related myeloid transforming gene products MTGR1 and MTG16 as well as the Nervy protein contain the NHR1-4 domains. The NHR1/TAFH domain occurs in the N-terminal part of these proteins, while a MYND-type zinc finger forms the NHR4 domain []. The TAFH/NHR1 domain can be involved in protein-protein interactions, e.g in MTG8/ETO with HSP90 and Gfi-1 []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2P6V_A 2KNH_A 2PP4_A 2H7B_A.
Probab=52.58 E-value=36 Score=26.37 Aligned_cols=64 Identities=31% Similarity=0.354 Sum_probs=44.4
Q ss_pred HHHHHHHhhCCCC---CcHHHHHHHHhhcccccccccHHHHHHHhHHc-c----CCcHHHHHHhhHHHHHHhCCcchh
Q 027078 57 GIESLCSDIEVSH---TDVRILMLAWKMKAEKQGYFTLEEWRRGLKAL-R----ADTVNKLKKALPDLEKEVKRPTNF 126 (228)
Q Consensus 57 G~~~~~~DLgv~~---ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l-~----~dsi~~lk~~l~~l~~~l~d~~~F 126 (228)
-+++|+.+ .++| +.+..||.+-.- |.|+-|||...++.. + -.=+.=||+.||.|++++.+.+.|
T Consensus 12 tLi~las~-~~spev~~~Vr~LV~~L~~-----~~i~~EeF~~~Lq~~lns~pqP~lvPFLK~~lp~Lr~~l~~~~~~ 83 (96)
T PF07531_consen 12 TLIQLASD-KQSPEVGENVRELVQNLVD-----GKIEAEEFTSKLQEELNSSPQPYLVPFLKKSLPALRQELPNCARF 83 (96)
T ss_dssp HHHHHHCC-SC-CCHHHHHHHHHHHHHT-----TSS-HHHHHHHHHHHCTSS--TTHHHHHHHHHHHHHHCHCHHHHH
T ss_pred HHHHHhcC-CCChHHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHhcCCCCcchHHHHHHhHHHHHHHHHHHHHH
Confidence 46777777 5555 345666655443 579999999999773 3 233788999999999999766554
No 43
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=51.72 E-value=33 Score=33.54 Aligned_cols=92 Identities=13% Similarity=0.196 Sum_probs=67.8
Q ss_pred CCCCHHHHHHHHHhhCCCCCcHHHHHHHHhhcccccccccHHHHHHHhHHccCCcHHHHHHhhHHHHHHhCC------cc
Q 027078 51 GMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRADTVNKLKKALPDLEKEVKR------PT 124 (228)
Q Consensus 51 ~~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l~~dsi~~lk~~l~~l~~~l~d------~~ 124 (228)
.+..+|-..+|.++|..++-.++..-.+. ..-|.||..+|-.-+-.+-..+.++....+.++.++..+ -+
T Consensus 301 ~kLs~deF~~F~e~Lq~Eil~lEF~~~~~----~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~~~gISl~ 376 (489)
T KOG2643|consen 301 GKLSIDEFLKFQENLQEEILELEFERFDK----GDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDDGKGISLQ 376 (489)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhCc----ccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCCCCCcCHH
Confidence 57899999999999987655555443332 223899999999999887777777777888888888854 25
Q ss_pred hhHHHHHhHhhhccCccccccccHHhHHHHH
Q 027078 125 NFQDFYAFAFRYCLTEEKQKSVDIESVCELL 155 (228)
Q Consensus 125 ~Fk~~Y~f~F~f~~~~~~qk~L~~d~Ai~~W 155 (228)
.|+.|++|..+.+ +.++|+.+-
T Consensus 377 Ef~~Ff~Fl~~l~---------dfd~Al~fy 398 (489)
T KOG2643|consen 377 EFKAFFRFLNNLN---------DFDIALRFY 398 (489)
T ss_pred HHHHHHHHHhhhh---------HHHHHHHHH
Confidence 7899988876643 345665553
No 44
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=49.64 E-value=40 Score=22.31 Aligned_cols=31 Identities=16% Similarity=0.093 Sum_probs=22.1
Q ss_pred cccccccccHHHHHHHhHHccCCcHHHHHHhh
Q 027078 82 KAEKQGYFTLEEWRRGLKALRADTVNKLKKAL 113 (228)
Q Consensus 82 ~a~~~g~itr~eF~~g~~~l~~dsi~~lk~~l 113 (228)
....-|.|+.+|+...+..+|. +-+.++..+
T Consensus 9 D~~~~G~i~~~el~~~l~~~g~-~~~~~~~i~ 39 (67)
T cd00052 9 DPDGDGLISGDEARPFLGKSGL-PRSVLAQIW 39 (67)
T ss_pred CCCCCCcCcHHHHHHHHHHcCC-CHHHHHHHH
Confidence 4455799999999999998886 444444433
No 45
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=48.28 E-value=1.5e+02 Score=24.13 Aligned_cols=92 Identities=16% Similarity=0.150 Sum_probs=49.2
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCcHH--------------------HHHHHHhh----cccccccccHHHHH
Q 027078 40 NLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVR--------------------ILMLAWKM----KAEKQGYFTLEEWR 95 (228)
Q Consensus 40 ~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed~~--------------------~LvLa~~l----~a~~~g~itr~eF~ 95 (228)
++-++--++.-...+.++++.+|+-++-+++.+. .|.|...| |..=--+|...+|+
T Consensus 4 ~~iekAT~~~l~~~dw~~ileicD~In~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl 83 (139)
T cd03567 4 AWLNKATNPSNREEDWEAIQAFCEQINKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFL 83 (139)
T ss_pred HHHHHHcCccCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHH
Confidence 3444444333345667777777777766665522 22222222 22223588999999
Q ss_pred HHhHHccC------CcHHHHHHhh----HHHHHHhCCcchhHHHHH
Q 027078 96 RGLKALRA------DTVNKLKKAL----PDLEKEVKRPTNFQDFYA 131 (228)
Q Consensus 96 ~g~~~l~~------dsi~~lk~~l----~~l~~~l~d~~~Fk~~Y~ 131 (228)
+.+.++-- .+-...|.++ ..|...+.+...|++.|+
T Consensus 84 ~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p~~~~~Y~ 129 (139)
T cd03567 84 NELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELPHEPKIKEAYD 129 (139)
T ss_pred HHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 88877532 2444555444 455555553334666554
No 46
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=47.28 E-value=1.4e+02 Score=25.62 Aligned_cols=136 Identities=15% Similarity=0.229 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHhc---CC-CCCCCCHHHHHHHHHhhCCCCCcHHHHHHHHhhcccccccccHHHHHHHhHHccCCcHHHH
Q 027078 34 EMERIDNLFYSYA---NK-SSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRADTVNKL 109 (228)
Q Consensus 34 ~~~~l~~lFd~Y~---d~-~~~~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l~~dsi~~l 109 (228)
+.+.++.|+.+|+ -+ ..+.|..+-+..+. .+..+|=...++-+....+.... ++.++|++++....+.+....
T Consensus 28 s~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~-~~~~Np~~~rI~~~f~~~~~~~~--v~F~~Fv~~ls~f~~~~~~~~ 104 (187)
T KOG0034|consen 28 SANEIERLYERFKKLDRNNGDGYLTKEEFLSIP-ELALNPLADRIIDRFDTDGNGDP--VDFEEFVRLLSVFSPKASKRE 104 (187)
T ss_pred CHHHHHHHHHHHHHhccccccCccCHHHHHHHH-HHhcCcHHHHHHHHHhccCCCCc--cCHHHHHHHHhhhcCCccHHH
Confidence 3455565555555 34 44789999998888 88999988888888877776655 999999999998877665552
Q ss_pred HHhhHHHHHHhCCcchhHHHHHhHhhhccCccccccccHHhHHHHHhhhhCCCCh---hhHHHHHHHHHhc---CCCCcC
Q 027078 110 KKALPDLEKEVKRPTNFQDFYAFAFRYCLTEEKQKSVDIESVCELLGLVLGSQYR---AQVDYLIEYLKIQ---SDYKVI 183 (228)
Q Consensus 110 k~~l~~l~~~l~d~~~Fk~~Y~f~F~f~~~~~~qk~L~~d~Ai~~W~lll~~~~~---~~l~~W~~Fl~~~---~~~k~I 183 (228)
|- +|+|..=- -.+.-.|..+.-...-..+++..-. ..++.=++++-.+ ..-..|
T Consensus 105 Kl-------------------~faF~vYD-~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~I 164 (187)
T KOG0034|consen 105 KL-------------------RFAFRVYD-LDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKI 164 (187)
T ss_pred HH-------------------HHHHHHhc-CCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcC
Confidence 22 23333221 1223346666666666666664322 2344444443321 122457
Q ss_pred ChhhHHHHH
Q 027078 184 NMDQWMGFY 192 (228)
Q Consensus 184 skD~W~~~l 192 (228)
|.+-|+-++
T Consensus 165 sfeEf~~~v 173 (187)
T KOG0034|consen 165 SFEEFCKVV 173 (187)
T ss_pred cHHHHHHHH
Confidence 777776554
No 47
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=46.82 E-value=78 Score=27.07 Aligned_cols=61 Identities=10% Similarity=0.191 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHhcCCCCCCCCHHHHHHHHHh--hCCCC----CcHHHHHHHHhhcccccccccHHHH
Q 027078 34 EMERIDNLFYSYANKSSGMIDPEGIESLCSD--IEVSH----TDVRILMLAWKMKAEKQGYFTLEEW 94 (228)
Q Consensus 34 ~~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~D--Lgv~~----ed~~~LvLa~~l~a~~~g~itr~eF 94 (228)
.+++++++|.+|+...++.+...-+.++... .=.|| ....-..++|.|-.+.-|..+||.-
T Consensus 94 vp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~~d~dG~l~Ke~i 160 (174)
T PF05042_consen 94 VPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILAKDKDGFLSKEDI 160 (174)
T ss_pred CHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHHcCcCCcEeHHHH
Confidence 5689999999999766688988888888875 22222 2244456677777777888877763
No 48
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=46.76 E-value=34 Score=29.93 Aligned_cols=54 Identities=15% Similarity=0.249 Sum_probs=38.3
Q ss_pred hhHHHhc-CCCCCChhhHHHHHHHHHHhcCCCCCCC-CHHHHHHHHHhhCCCCCcH
Q 027078 19 ATDLFRS-ASSKASSKEMERIDNLFYSYANKSSGMI-DPEGIESLCSDIEVSHTDV 72 (228)
Q Consensus 19 A~d~y~~-~~~~~~~~~~~~l~~lFd~Y~d~~~~~I-~~dG~~~~~~DLgv~~ed~ 72 (228)
++|+|.+ .++.-....+.++.+.|.+-.-.++..+ +.+|+.+||.+-=-+-...
T Consensus 66 ~~n~fl~~~~~~~~~~~~~~~~~YyKkhIy~~d~~v~d~~~lv~~ck~Fl~~~s~f 121 (205)
T PF12238_consen 66 HMNAFLNDWPPHMLEEGREKMTKYYKKHIYKEDSEVKDYNGLVKFCKDFLDSESPF 121 (205)
T ss_pred HHHHHHccCchhhhhccHHHHHHHHHHhccCcccccccHHHHHHHHHHHhccccHH
Confidence 7888888 3333233467888999988766556667 9999999999874444433
No 49
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=46.02 E-value=13 Score=25.04 Aligned_cols=22 Identities=9% Similarity=0.217 Sum_probs=14.8
Q ss_pred CCCCHHHHHHHHHhhCCCCCcH
Q 027078 51 GMIDPEGIESLCSDIEVSHTDV 72 (228)
Q Consensus 51 ~~I~~dG~~~~~~DLgv~~ed~ 72 (228)
..+..+-+.++|+-||++|+++
T Consensus 36 ~~~~~~~l~~ia~~l~~~~~el 57 (63)
T PF13443_consen 36 SNPSLDTLEKIAKALNCSPEEL 57 (63)
T ss_dssp ----HHHHHHHHHHHT--HHHC
T ss_pred ccccHHHHHHHHHHcCCCHHHH
Confidence 5799999999999999999875
No 50
>PRK10945 gene expression modulator; Provisional
Probab=43.94 E-value=35 Score=25.11 Aligned_cols=40 Identities=18% Similarity=0.396 Sum_probs=31.2
Q ss_pred ccHHHHHHHhHHccCCcHHHHHHhhHHHHHHhCCcchhHHHHH
Q 027078 89 FTLEEWRRGLKALRADTVNKLKKALPDLEKEVKRPTNFQDFYA 131 (228)
Q Consensus 89 itr~eF~~g~~~l~~dsi~~lk~~l~~l~~~l~d~~~Fk~~Y~ 131 (228)
.|+.+|+-.++. |.|++.|-..+..++..|.+ ..+..||.
T Consensus 6 Mtk~dyL~~fRr--css~eTLEkvie~~~~~L~~-~E~~~f~~ 45 (72)
T PRK10945 6 LTKTDYLMRLRR--CQTIDTLERVIEKNKYELSD-DELAVFYS 45 (72)
T ss_pred ccHHHHHHHHHh--cCcHHHHHHHHHHhhccCCH-HHHHHHHH
Confidence 389999976654 99999999999999999986 34544544
No 51
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=43.68 E-value=55 Score=24.11 Aligned_cols=70 Identities=11% Similarity=-0.009 Sum_probs=39.3
Q ss_pred CCCCcHHHHHHHHhh-cccccccccHHHHHHHhHHccCCcHHHHHHhhHHHHHHhCCcchhHHHHHhHhhhc
Q 027078 67 VSHTDVRILMLAWKM-KAEKQGYFTLEEWRRGLKALRADTVNKLKKALPDLEKEVKRPTNFQDFYAFAFRYC 137 (228)
Q Consensus 67 v~~ed~~~LvLa~~l-~a~~~g~itr~eF~~g~~~l~~dsi~~lk~~l~~l~~~l~d~~~Fk~~Y~f~F~f~ 137 (228)
++++++..+--+... -...-|.|+.+++...|+.+|+. -+.++..+...+..-...-.|.+|+...-..+
T Consensus 4 ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~-~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~ 74 (96)
T smart00027 4 ISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLP-QTLLAKIWNLADIDNDGELDKDEFALAMHLIY 74 (96)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCC-HHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHH
Confidence 455555555555544 44568999999999999998863 34444433332221111223555555444433
No 52
>PF01314 AFOR_C: Aldehyde ferredoxin oxidoreductase, domains 2 & 3; InterPro: IPR001203 Enzymes of the aldehyde ferredoxin oxidoreductase (AOR) family [] contain a tungsten cofactor and an 4Fe4S cluster and catalyse the interconversion of aldehydes to carboxylates []. This family includes AOR, formaldehyde ferredoxin oxidoreductase (FOR), glyceraldehyde-3-phosphate ferredoxin oxidoreductase (GAPOR), all isolated from hyperthermophilic archea []; carboxylic acid reductase found in clostridia []; and hydroxycarboxylate viologen oxidoreductase from Proteus vulgaris, the sole member of the AOR family containing molybdenum []. GAPOR may be involved in glycolysis [], but the functions of the other proteins are not yet clear. AOR has been proposed to be the primary enzyme responsible for oxidising the aldehydes that are produced by the 2-keto acid oxidoreductases []. This entry represents the C-terminal region of these enzymes, containing the alpha-helical structural domains 2 and 3 [, ].; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0016625 oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor, 0051536 iron-sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 1B25_C 1B4N_C 1AOR_B.
Probab=41.41 E-value=14 Score=34.69 Aligned_cols=36 Identities=25% Similarity=0.478 Sum_probs=29.8
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHhhcccccccccHHHH
Q 027078 58 IESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEW 94 (228)
Q Consensus 58 ~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~itr~eF 94 (228)
+..+|++||+|.-+.-. +|||.|.+-.-|.|++++.
T Consensus 116 ~~~lcd~~GlDtis~G~-~ia~~me~~e~G~i~~~d~ 151 (382)
T PF01314_consen 116 ANDLCDDYGLDTISAGN-TIAWAMELYEKGLITKEDT 151 (382)
T ss_dssp HHHHHHHHTB-HHHHHH-HHHHHHHHHHTTSSSCHHH
T ss_pred HHHHHHHhCCcHHHHHH-HHHHHHHHHHCCCCChhhc
Confidence 34689999999866664 8999999999999999887
No 53
>PLN02964 phosphatidylserine decarboxylase
Probab=41.23 E-value=1.3e+02 Score=30.76 Aligned_cols=64 Identities=11% Similarity=0.015 Sum_probs=49.4
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCcHHHHHHHHhhcccccccccHHHHHHHhHH
Q 027078 37 RIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKA 100 (228)
Q Consensus 37 ~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~ 100 (228)
-+.++|..+-.+.++.|+.+-+..++..+|-...+-.+.-+-..+.-..-|.||.+|+.+.|..
T Consensus 180 fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 180 FARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 3788999884444588999999999999986544444555555666667899999999999888
No 54
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=41.10 E-value=65 Score=22.51 Aligned_cols=40 Identities=15% Similarity=0.251 Sum_probs=26.8
Q ss_pred hhhHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCcH
Q 027078 32 SKEMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDV 72 (228)
Q Consensus 32 ~~~~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed~ 72 (228)
+.....|++.|++-.=- -..++.+-...||.+|||+..-+
T Consensus 10 ~~Q~~~Le~~fe~~~y~-~~~~~~~~r~~la~~lgl~~~vv 49 (58)
T TIGR01565 10 AEQKEKMRDFAEKLGWK-LKDKRREEVREFCEEIGVTRKVF 49 (58)
T ss_pred HHHHHHHHHHHHHcCCC-CCCCCHHHHHHHHHHhCCCHHHe
Confidence 34566777777764310 01267888999999999986533
No 55
>smart00862 Trans_reg_C Transcriptional regulatory protein, C terminal. This domain is almost always found associated with the response regulator receiver domain. It may play a role in DNA binding.
Probab=40.53 E-value=73 Score=21.82 Aligned_cols=52 Identities=15% Similarity=0.118 Sum_probs=38.3
Q ss_pred CCcHHHHHHHHhhcccccccccHHHHHHH-hHHcc-CCcHHHHHHhhHHHHHHhC
Q 027078 69 HTDVRILMLAWKMKAEKQGYFTLEEWRRG-LKALR-ADTVNKLKKALPDLEKEVK 121 (228)
Q Consensus 69 ~ed~~~LvLa~~l~a~~~g~itr~eF~~g-~~~l~-~dsi~~lk~~l~~l~~~l~ 121 (228)
...-+.-+|+.++..+.. .+|+++..+. |..-. ..+...++..|..|++.|.
T Consensus 6 Lt~~e~~lL~~L~~~~~~-~vs~~~l~~~lw~~~~~~~~~~~l~~~i~~LR~~l~ 59 (78)
T smart00862 6 LTPKEFRLLELLLRNPGR-VVSREELLEAVWGDDDDDVDDNTLDVHISRLRKKLE 59 (78)
T ss_pred cCHHHHHHHHHHHhCCCC-ccCHHHHHHHHcCCCCCCCccchHHHHHHHHHHHHh
Confidence 344556677888877555 7999999996 43322 4567789999999999985
No 56
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=35.70 E-value=57 Score=21.45 Aligned_cols=38 Identities=16% Similarity=0.330 Sum_probs=28.7
Q ss_pred hhhHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCcHHH
Q 027078 32 SKEMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRI 74 (228)
Q Consensus 32 ~~~~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed~~~ 74 (228)
+.....|++.|+. + ..++.+-+..++..|||++..|..
T Consensus 9 ~~q~~~L~~~f~~--~---~~p~~~~~~~la~~l~l~~~~V~~ 46 (57)
T PF00046_consen 9 KEQLKVLEEYFQE--N---PYPSKEEREELAKELGLTERQVKN 46 (57)
T ss_dssp HHHHHHHHHHHHH--S---SSCHHHHHHHHHHHHTSSHHHHHH
T ss_pred HHHHHHHHHHHHH--h---cccccccccccccccccccccccc
Confidence 4456777788875 2 357788899999999999887654
No 57
>PF07848 PaaX: PaaX-like protein; InterPro: IPR012906 This entry describes the N-terminal region of proteins that are similar to, and nclude, the product of the paaX gene of Escherichia coli (P76086 from SWISSPROT). PaaX is a transcriptional regulator that is always found in association with operons believed to be involved in the degradation of phenylacetic acid []. The gene product has been shown to bind to the promoter sites and repress their transcription []. ; PDB: 3KFW_X 3L09_B.
Probab=34.34 E-value=30 Score=24.91 Aligned_cols=38 Identities=26% Similarity=0.260 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCcHHH
Q 027078 37 RIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRI 74 (228)
Q Consensus 37 ~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed~~~ 74 (228)
=|-.+|-.|--+.++.|...+++++++.+||++..+.+
T Consensus 5 li~tl~Gdy~~~~g~~i~~~~Li~ll~~~Gv~e~avR~ 42 (70)
T PF07848_consen 5 LIVTLLGDYLRPRGGWIWVASLIRLLAAFGVSESAVRT 42 (70)
T ss_dssp HHHHHHHHHCCTTTS-EEHHHHHHHHCCTT--HHHHHH
T ss_pred ehHHHHHHHhccCCCceeHHHHHHHHHHcCCChHHHHH
Confidence 45678888887777889999999999999999876554
No 58
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=34.29 E-value=99 Score=23.07 Aligned_cols=63 Identities=16% Similarity=0.264 Sum_probs=40.7
Q ss_pred HHHHHHHHhhccc--ccccccHHHHHHHhHH-cc--CCcHHHHHHhhHHHHHHhC----CcchhHHHHHhHhhhcc
Q 027078 72 VRILMLAWKMKAE--KQGYFTLEEWRRGLKA-LR--ADTVNKLKKALPDLEKEVK----RPTNFQDFYAFAFRYCL 138 (228)
Q Consensus 72 ~~~LvLa~~l~a~--~~g~itr~eF~~g~~~-l~--~dsi~~lk~~l~~l~~~l~----d~~~Fk~~Y~f~F~f~~ 138 (228)
+..|+-+...=+. .-|.|+++|+..-++. +| +... ..+.++.+.+. ..-.|.+|-......+.
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~----~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~ 78 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDV----EGLEEKMKNLDVNQDSKLSFEEFWELIGELAK 78 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCH----HHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 4556666665555 6799999999999998 76 2222 33444444442 23368888777766665
No 59
>PF00486 Trans_reg_C: Transcriptional regulatory protein, C terminal; InterPro: IPR001867 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain that is almost always found associated with the response regulator receiver domain (see IPR001789 from INTERPRO). It may play a role in DNA binding [].; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2K4J_A 2JPB_A 1ODD_A 1OPC_A 1KGS_A 2PMU_E 2JZY_A 1GXP_B 1QQI_A 2Z33_A ....
Probab=33.95 E-value=83 Score=21.56 Aligned_cols=49 Identities=16% Similarity=0.163 Sum_probs=36.4
Q ss_pred HHHHHHHHhhcccccccccHHHHHHHhHHccC-CcHHHHHHhhHHHHHHhC
Q 027078 72 VRILMLAWKMKAEKQGYFTLEEWRRGLKALRA-DTVNKLKKALPDLEKEVK 121 (228)
Q Consensus 72 ~~~LvLa~~l~a~~~g~itr~eF~~g~~~l~~-dsi~~lk~~l~~l~~~l~ 121 (228)
.+.-+|+.++..+.. .+||++..+..-.-.. .+-..+..+|..|++.|.
T Consensus 9 ~e~~lL~~L~~~~~~-~vs~~~l~~~~w~~~~~~~~~~l~~~I~rLR~kL~ 58 (77)
T PF00486_consen 9 KEFRLLELLLRNPGR-VVSREELIEALWGDEEDVSDNSLDVHISRLRKKLE 58 (77)
T ss_dssp HHHHHHHHHHHTTTS-EEEHHHHHHHHTSSSSTTCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCC-CCCHHHhCChhhhcccccchhhHHHHHHHHHHHHh
Confidence 445556666655433 7999999986555444 788899999999999995
No 60
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=32.41 E-value=2e+02 Score=25.58 Aligned_cols=69 Identities=14% Similarity=0.162 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCC-CcHHHHHHHHhhcccccccccHHHHHHHhHHcc
Q 027078 34 EMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSH-TDVRILMLAWKMKAEKQGYFTLEEWRRGLKALR 102 (228)
Q Consensus 34 ~~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~-ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l~ 102 (228)
....+..+|..=-.+....|..+-+++-+.-.+.++ ..-.+-.|..++..+..|.|--+||..-|+.++
T Consensus 55 ~~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~ 124 (221)
T KOG0037|consen 55 TFPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYIN 124 (221)
T ss_pred ccHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH
Confidence 455777788776444458899999999988888887 444556677889999999999999999887753
No 61
>PLN02223 phosphoinositide phospholipase C
Probab=31.74 E-value=96 Score=31.01 Aligned_cols=65 Identities=12% Similarity=0.006 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHhh-------CCCCCcHHHHHHHHhh------cccccccccHHHHHHHhHH
Q 027078 35 MERIDNLFYSYANKSSGMIDPEGIESLCSDI-------EVSHTDVRILMLAWKM------KAEKQGYFTLEEWRRGLKA 100 (228)
Q Consensus 35 ~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DL-------gv~~ed~~~LvLa~~l------~a~~~g~itr~eF~~g~~~ 100 (228)
+..+..+|++|.+ +.+.++.+++.+|+.=| +...++...++-...- ++...+.++.++|..-+..
T Consensus 15 p~~v~~~f~~~~~-~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 15 PDLILNFFGNEFH-GYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred cHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 4567889999974 34789999999999433 5556666555443221 1122245777777776644
No 62
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=31.63 E-value=1.6e+02 Score=19.54 Aligned_cols=54 Identities=28% Similarity=0.480 Sum_probs=36.6
Q ss_pred HhhcccccccccHHHHHHHhHHccCCc-HHHHHHhhHHHHHHhC-C--c-chhHHHHHh
Q 027078 79 WKMKAEKQGYFTLEEWRRGLKALRADT-VNKLKKALPDLEKEVK-R--P-TNFQDFYAF 132 (228)
Q Consensus 79 ~~l~a~~~g~itr~eF~~g~~~l~~ds-i~~lk~~l~~l~~~l~-d--~-~~Fk~~Y~f 132 (228)
..+-...-|.|+++|+...+..++... -..++..+..+-+.+. | . -.|.+|.++
T Consensus 7 ~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 7 KKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNF 65 (66)
T ss_dssp HHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHH
T ss_pred HHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhcc
Confidence 345566789999999999999998654 5566666666666652 2 1 135555544
No 63
>PLN02230 phosphoinositide phospholipase C 4
Probab=30.35 E-value=1.4e+02 Score=30.26 Aligned_cols=66 Identities=17% Similarity=0.252 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCC-----CCCcHHHHHHHHhhc-----ccccccccHHHHHHHhHH
Q 027078 34 EMERIDNLFYSYANKSSGMIDPEGIESLCSDIEV-----SHTDVRILMLAWKMK-----AEKQGYFTLEEWRRGLKA 100 (228)
Q Consensus 34 ~~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv-----~~ed~~~LvLa~~l~-----a~~~g~itr~eF~~g~~~ 100 (228)
.+..+..+|.+|.+.. +.++.+++.+|+.+-+= ++++..-++....-. ....+.+|.++|..-+..
T Consensus 27 p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 27 PVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 3567899999997543 68999999999998763 233344444322111 112345999999987644
No 64
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=30.02 E-value=1.9e+02 Score=25.68 Aligned_cols=67 Identities=13% Similarity=0.339 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCcHHHHHHHHhhcccccccccHHHHHHHhH
Q 027078 33 KEMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLK 99 (228)
Q Consensus 33 ~~~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~ 99 (228)
+..+.+...|.+|-.+.++.|+..-+-++.|-||-.-..+.+=-+.-.+--..-|.+|--||+-...
T Consensus 96 kqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfr 162 (244)
T KOG0041|consen 96 KQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFR 162 (244)
T ss_pred HHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence 3456677899999776678999999999999999887777666666666666678899888887654
No 65
>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]
Probab=29.71 E-value=52 Score=28.88 Aligned_cols=39 Identities=21% Similarity=0.213 Sum_probs=31.4
Q ss_pred ChhhHHHHHHHHHHhcCCCC-CCCCHHHHHHHHHhhCCCC
Q 027078 31 SSKEMERIDNLFYSYANKSS-GMIDPEGIESLCSDIEVSH 69 (228)
Q Consensus 31 ~~~~~~~l~~lFd~Y~d~~~-~~I~~dG~~~~~~DLgv~~ 69 (228)
.....+...+||.+|.++++ -.++.+++..++...|+--
T Consensus 44 D~~vn~at~~Lf~~~~t~e~l~~a~~~~l~~~I~~iGlyr 83 (211)
T COG0177 44 DEVVNKATPALFKRYPTPEDLLNADEEELEELIKSIGLYR 83 (211)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHcCCHHHHHHHHHhcCCcH
Confidence 33455677889999998766 6799999999999998864
No 66
>PF07261 DnaB_2: Replication initiation and membrane attachment; InterPro: IPR006343 This entry represents a domain found in several bacterial replication initiation and membrane attachment proteins, DnaB and DnaD. The DnaD protein is a component of the PriA primosome. The PriA primosome functions to recruit the replication fork helicase onto the DNA []. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria []. The DnaB protein is essential for both replication initiation and membrane attachment of the origin region of the chromosome and Plasmid pUB110 in Bacillus subtilis. It is known that there are two different classes (DnaBI and DnaBII) in the DnaB mutants; DnaBI is essential for both chromosome and pUB110 replication, whereas DnaBII is necessary only for chromosome replication []. This domain tends to be found towards the C terminus of DnaB and DnaD proteins and is alpha helical in nature.; PDB: 2I5U_A 2ZC2_A.
Probab=29.55 E-value=7.7 Score=27.32 Aligned_cols=59 Identities=17% Similarity=0.173 Sum_probs=25.7
Q ss_pred CHHHHHHHHHhhCCCCCcHHHHHHHHhhcccccccccHHHHHHHhHHccCCcHHHHHHhh
Q 027078 54 DPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRADTVNKLKKAL 113 (228)
Q Consensus 54 ~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l~~dsi~~lk~~l 113 (228)
..+-+.+++++.|.+++ ++..++-+-+.......=--+.-++.|...|+.|+++..++.
T Consensus 17 e~~~l~~~~~~~~~~~~-~v~~ai~~~~~~~~~~~~Yi~~Il~~W~~~gi~t~e~~~~~~ 75 (77)
T PF07261_consen 17 EIEKLEKWIDDYGFSPE-VVNEAIEYALENNKRSFNYIEKILNNWKQKGIKTVEDAEEYE 75 (77)
T ss_dssp HHHHHHHHHCCCHHHHH-HHHHHHHHHHHCT--SHHHHHHHHHHHHHCT--SCCCCT---
T ss_pred HHHHHHHHHHHcCCCHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHh
Confidence 33445555554444443 443333333321111111223566778888888877665543
No 67
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=28.56 E-value=2.6e+02 Score=27.74 Aligned_cols=66 Identities=21% Similarity=0.311 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHhh----CCCCCcHHHHHHHHhhcccccccccHHHHHHHhHH
Q 027078 35 MERIDNLFYSYANKSSGMIDPEGIESLCSDI----EVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKA 100 (228)
Q Consensus 35 ~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DL----gv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~ 100 (228)
.+.|+.+|+---.+.++.|..+-...-|+-| .+...|-.++-||..|.-..=|.|--.||++..+-
T Consensus 546 ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 546 KSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred hhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 3567777876654455788888887777644 56678888888888888888888999999887653
No 68
>PF06535 RGM_N: Repulsive guidance molecule (RGM) N-terminus; InterPro: IPR010536 This entry represents the N-terminal region of several mammalian and one bird sequence from Gallus gallus (Chicken). All of the mammalian proteins are hypothetical and have no known function but Q8JG54 from SWISSPROT from the chicken is annotated as being a repulsive guidance molecule (RGM). RGM is a GPI-linked axon guidance molecule of the retinotectal system. RGM is repulsive for a subset of axons, those from the temporal half of the retina. Temporal retinal axons invade the anterior optic tectum in a superficial layer, and encounter RGM expressed in a gradient with increasing concentration along the anterior-posterior axis. Temporal axons are able to receive posterior-dependent information by sensing gradients or concentrations of guidance cues. Thus, RGM is likely to provide positional information for temporal axons invading the optic tectum in the stratum opticum [].
Probab=28.24 E-value=17 Score=30.69 Aligned_cols=16 Identities=31% Similarity=0.800 Sum_probs=10.4
Q ss_pred CCCCCCCCCCCchhhHH
Q 027078 201 PDFNNYDPNLAWPLVLD 217 (228)
Q Consensus 201 ~dls~YDe~~AWP~liD 217 (228)
+++.-=-.+|||| |||
T Consensus 115 ~~fqTC~v~GAWP-LId 130 (161)
T PF06535_consen 115 DEFQTCKVEGAWP-LID 130 (161)
T ss_pred CCceeeeeeccee-eec
Confidence 3444444789999 455
No 69
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=28.15 E-value=42 Score=24.31 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=14.3
Q ss_pred ccccccHHHHHHHhHHc
Q 027078 85 KQGYFTLEEWRRGLKAL 101 (228)
Q Consensus 85 ~~g~itr~eF~~g~~~l 101 (228)
.-++|||++|++.++..
T Consensus 38 k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 38 KKKKISREEFVRKLRQI 54 (70)
T ss_pred HHCCCCHHHHHHHHHHH
Confidence 35789999999998874
No 70
>PF13624 SurA_N_3: SurA N-terminal domain; PDB: 3NRK_A.
Probab=27.71 E-value=66 Score=25.40 Aligned_cols=60 Identities=20% Similarity=0.237 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHhhCCCCCcHHHHHHHHhhcc-cccccccHHHHHHHhHHccCCcHHHHHHhh
Q 027078 53 IDPEGIESLCSDIEVSHTDVRILMLAWKMKA-EKQGYFTLEEWRRGLKALRADTVNKLKKAL 113 (228)
Q Consensus 53 I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a-~~~g~itr~eF~~g~~~l~~dsi~~lk~~l 113 (228)
|.-.=+.+.++++||.+.|-.+--.-....+ ..-|.++++.|.+.++..|.+ .++++..|
T Consensus 84 I~~~ll~q~A~~~gi~vsd~ev~~~i~~~~~f~~~g~~~~~~f~~~L~~~g~t-~~~~~~~l 144 (154)
T PF13624_consen 84 IDQKLLLQEAKKLGISVSDAEVDDAIKQIPAFQENGKFDKEAFEEFLKQQGMT-EEEFKEEL 144 (154)
T ss_dssp HHHHHHHHHHHHTT----HHHHHHHHHH--HHHHH----HHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhcc-ccccchhh
Confidence 4444567888999999877665544333221 123889999999999998874 45555554
No 71
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=27.58 E-value=66 Score=18.63 Aligned_cols=17 Identities=18% Similarity=0.421 Sum_probs=14.5
Q ss_pred CCCCCHHHHHHHHHhhC
Q 027078 50 SGMIDPEGIESLCSDIE 66 (228)
Q Consensus 50 ~~~I~~dG~~~~~~DLg 66 (228)
.+.|+.+|+..+|+-|.
T Consensus 11 ~N~i~~~G~~~L~~~L~ 27 (28)
T smart00368 11 NNKLGDEGARALAEALK 27 (28)
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 47899999999998773
No 72
>COG3710 CadC DNA-binding winged-HTH domains [Transcription]
Probab=27.46 E-value=76 Score=26.00 Aligned_cols=71 Identities=10% Similarity=0.104 Sum_probs=49.5
Q ss_pred hCCCCCcHHHHHHHHhhcccccccccHHHHHH-HhHHccCCcHHHHHHhhHHHHHHhCCc----chhHHHHHhHhhhc
Q 027078 65 IEVSHTDVRILMLAWKMKAEKQGYFTLEEWRR-GLKALRADTVNKLKKALPDLEKEVKRP----TNFQDFYAFAFRYC 137 (228)
Q Consensus 65 Lgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~-g~~~l~~dsi~~lk~~l~~l~~~l~d~----~~Fk~~Y~f~F~f~ 137 (228)
--|..+..+.-||..+++ ..-..++|+++++ -|..-.+.- +.|-+.|..||+.|.|. +.+..|++==|.|.
T Consensus 28 ~~v~l~~~~~~lL~~L~e-~~geVvsk~eL~~~VW~~~~v~~-~~Ltq~I~~LRr~L~d~~~~~~~I~TvPrrGyk~~ 103 (148)
T COG3710 28 EVVKLGPRELKLLSLLLE-RAGEVVSKDELLDAVWPGRIVTV-NTLTQAISALRRALRDIGDGHRLIATVPRRGYKFT 103 (148)
T ss_pred eEEEecHHHHHHHHHHHh-ccCceecHHHHHHHhCCCceEcc-ChHHHHHHHHHHHHhccCCcceEEEEeCCcceEEe
Confidence 445566677888888888 3445799999999 577655433 33999999999999643 34666665555544
No 73
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=27.41 E-value=2.8e+02 Score=21.02 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=45.2
Q ss_pred CCCCHHHHHHHHHhhCCCCCcHHHHHHHHhhcccccccccHHHHHHHhHHcc
Q 027078 51 GMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALR 102 (228)
Q Consensus 51 ~~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l~ 102 (228)
+.|..+-+.+||..-||+......-.++..|+....-.|..++=.+-.+++-
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia 64 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIA 64 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 4699999999999999999999999999999999998888887766666653
No 74
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=27.26 E-value=1.8e+02 Score=19.94 Aligned_cols=48 Identities=15% Similarity=0.131 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHhhCCCCCcHHHHHHHHhhcccccccccHHHHHHHhHH
Q 027078 53 IDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKA 100 (228)
Q Consensus 53 I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~ 100 (228)
+...-+.+|+..++|++++--...|-..+.-..-|....+||+.=.+.
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 345668889999999999988888888888888899999999875443
No 75
>PF07864 DUF1651: Protein of unknown function (DUF1651); InterPro: IPR012447 The proteins in this entry have not been characterised.
Probab=27.07 E-value=41 Score=24.22 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=19.8
Q ss_pred ccccccHHhHHHHHhhhhCCCCh
Q 027078 142 KQKSVDIESVCELLGLVLGSQYR 164 (228)
Q Consensus 142 ~qk~L~~d~Ai~~W~lll~~~~~ 164 (228)
+.|.|.++.|++.|+-|+..++.
T Consensus 46 ~rr~l~~~~A~e~W~~L~~~GW~ 68 (75)
T PF07864_consen 46 TRRRLTREEARELWKELQKTGWR 68 (75)
T ss_pred EEEEEEHHHHHHHHHHHHHcCCE
Confidence 35889999999999999988763
No 76
>cd00383 trans_reg_C Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and a response regulator. The former autophosphorylates in a histidine residue on detecting an external stimulus. The phosphate is then transferred to an invariant aspartate residue in a highly conserved receiver domain of the response regulator. Phosphorylation activates a variable effector domain of the response regulator, which triggers the cellular response. The C-terminal effector domain contains DNA and RNA polymerase binding sites. Several dimers or monomers bind head to tail to small tandem repeats upstream of the genes. The RNA polymerase binding sites interact with the alpha or sigma subunite of RNA polymerase.
Probab=26.80 E-value=1.3e+02 Score=21.42 Aligned_cols=56 Identities=11% Similarity=0.048 Sum_probs=39.9
Q ss_pred hCCCCCcHHHHHHHHhhcccccccccHHHHHHHhHHccC-CcHHHHHHhhHHHHHHhC
Q 027078 65 IEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRA-DTVNKLKKALPDLEKEVK 121 (228)
Q Consensus 65 Lgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l~~-dsi~~lk~~l~~l~~~l~ 121 (228)
-.|.+..-+..+|+.++..+.. .+||++..+.+-.-.. .+-..++.+|.+|++.|.
T Consensus 20 ~~v~Lt~~e~~lL~~L~~~~~~-~vs~~~l~~~lw~~~~~~~~~~l~~~I~rLRkkl~ 76 (95)
T cd00383 20 EPVELTPKEFELLELLARNPGR-VLSREQLLEAVWGDDYDVDDRTVDVHISRLRKKLE 76 (95)
T ss_pred EEEEeCHHHHHHHHHHHhCCCC-cCCHHHHHHHhcCCCCCCCcccHHHHHHHHHHHhc
Confidence 3345555667777777766553 6899999987644332 356779999999999995
No 77
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=26.42 E-value=3.5e+02 Score=21.91 Aligned_cols=46 Identities=22% Similarity=0.361 Sum_probs=27.4
Q ss_pred cccccHHHHHHHhHHccCC-cHHHHHHh----hHHHHHHhC-Ccc--hhHHHHH
Q 027078 86 QGYFTLEEWRRGLKALRAD-TVNKLKKA----LPDLEKEVK-RPT--NFQDFYA 131 (228)
Q Consensus 86 ~g~itr~eF~~g~~~l~~d-si~~lk~~----l~~l~~~l~-d~~--~Fk~~Y~ 131 (228)
--+|...+|++-+..+--+ +-...|.+ |..|...+. +|+ .+.++|+
T Consensus 73 h~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~ 126 (144)
T cd03568 73 HQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKNDPSLSLMSDLYK 126 (144)
T ss_pred HHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHH
Confidence 3588899999998776444 44444444 445555554 343 3555554
No 78
>COG2922 Smg Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.38 E-value=58 Score=27.20 Aligned_cols=35 Identities=20% Similarity=0.348 Sum_probs=29.4
Q ss_pred HHHHHHHhcCCCC-CCCCHHHHHHHHHhhCCCCCcH
Q 027078 38 IDNLFYSYANKSS-GMIDPEGIESLCSDIEVSHTDV 72 (228)
Q Consensus 38 l~~lFd~Y~d~~~-~~I~~dG~~~~~~DLgv~~ed~ 72 (228)
|-=||+.|.+.+. =.++.|.+...++|.|.+++|+
T Consensus 5 l~YLfE~y~h~ea~l~vd~d~L~~~L~~aGF~~~dI 40 (157)
T COG2922 5 LMYLFETYIHNEAELPVDQDSLENDLEDAGFDREDI 40 (157)
T ss_pred HHHHHHHHhccCCCCCcCHHHHHhHHHHcCCCHHHH
Confidence 3458999998765 4589999999999999999885
No 79
>PF04659 Arch_fla_DE: Archaeal flagella protein ; InterPro: IPR006752 Archaeal flagella are unique motility structures, and the absence of bacterial structural motility genes in the complete genome sequences of flagellated archaeal species has always suggested that archaeal flagellar biogenesis is likely mediated by novel components. FlaD and FlaE, are present in the cell as membrane-associated proteins but are not major components of isolated flagellar filaments. Interestingly, flaD was found to encode two proteins, each translated from a separate ribosome binding site. This group of sequences contain the archaeal flaD and flaE proteins. The conserved region that defines these sequences is found in the N-teminal region of flaE but towards the C-terminal region of flaD [].; GO: 0001539 ciliary or flagellar motility
Probab=26.18 E-value=1.2e+02 Score=23.53 Aligned_cols=52 Identities=13% Similarity=0.305 Sum_probs=35.5
Q ss_pred HHHHHHHHhcC-------------CCCcCChhhHHHHHHHHhhcCCCCCCCCCCCCCchhhHHHHH
Q 027078 168 DYLIEYLKIQS-------------DYKVINMDQWMGFYRFCNEISFPDFNNYDPNLAWPLVLDNFV 220 (228)
Q Consensus 168 ~~W~~Fl~~~~-------------~~k~IskD~W~~~l~F~~~v~~~dls~YDe~~AWP~liDeFV 220 (228)
=.|++||.+.. .-.-||.+.=.+++.|++.+. .+-...+..+.|..-+|+=+
T Consensus 22 ~eWLefLve~~G~~~~~~~L~YY~~igWISe~V~~~L~~~~~G~~-~~~~~~~~~~~~~Lt~~DH~ 86 (99)
T PF04659_consen 22 FEWLEFLVERVGHNNAADALDYYESIGWISEEVREQLLKYLKGFK-YDHDDFEWKPSWKLTIDDHI 86 (99)
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHcCCcCHHHHHHHHHHHhCCC-CCccccccCCCCCCCHHHHH
Confidence 35888888642 124699999999999998764 22222233688888887643
No 80
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=25.56 E-value=1.2e+02 Score=22.15 Aligned_cols=30 Identities=13% Similarity=0.274 Sum_probs=19.8
Q ss_pred cccccHHHHHHHhHH-----ccCC-cHHHHHHhhHH
Q 027078 86 QGYFTLEEWRRGLKA-----LRAD-TVNKLKKALPD 115 (228)
Q Consensus 86 ~g~itr~eF~~g~~~-----l~~d-si~~lk~~l~~ 115 (228)
-|.|+++|+...+.. +|+. +-+.++..+..
T Consensus 24 dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~ 59 (94)
T cd05031 24 KNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKD 59 (94)
T ss_pred CCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHH
Confidence 589999999999876 3433 44444444443
No 81
>PF04337 DUF480: Protein of unknown function, DUF480; InterPro: IPR007432 This family consists of several proteins of uncharacterised function.; PDB: 3BZ6_A.
Probab=25.41 E-value=68 Score=26.73 Aligned_cols=56 Identities=18% Similarity=0.323 Sum_probs=39.0
Q ss_pred HHHHHhhCCCCCcHHHHHHHHhhcccccccc-cHHHHHHHhHHccCCcHHHHHHhhHHHHHH
Q 027078 59 ESLCSDIEVSHTDVRILMLAWKMKAEKQGYF-TLEEWRRGLKALRADTVNKLKKALPDLEKE 119 (228)
Q Consensus 59 ~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~i-tr~eF~~g~~~l~~dsi~~lk~~l~~l~~~ 119 (228)
.+||+-|++++....+||+..+=|.++.|++ +|.+ +-...+++++....|.+|...
T Consensus 78 Hr~~~~l~l~~~e~All~~LlLRGpQT~GELR~Rs~-----Rl~~F~d~~~Ve~~L~~L~~r 134 (148)
T PF04337_consen 78 HRFCNTLQLSPQELALLCLLLLRGPQTPGELRTRSE-----RLHEFADVAEVEAVLERLAER 134 (148)
T ss_dssp E-HHHHHT--HHHHHHHHHHHHH-SB-HHHHHHHHT-----TTS--SSHHHHHHHHHHHHHT
T ss_pred hhhhhhcCCCHHHHHHHHHHHHcCCCchhHHHhhhc-----cccCCCCHHHHHHHHHHHHhc
Confidence 4689999999999999999999999999986 2222 223578899999998888654
No 82
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=25.28 E-value=1.6e+02 Score=22.72 Aligned_cols=62 Identities=29% Similarity=0.348 Sum_probs=42.3
Q ss_pred HHHHHHhhC-CCC-CcHHHHHHHHhhcccccccccHHHHHHHhHHc-c----CCcHHHHHHhhHHHHHHhCCcc
Q 027078 58 IESLCSDIE-VSH-TDVRILMLAWKMKAEKQGYFTLEEWRRGLKAL-R----ADTVNKLKKALPDLEKEVKRPT 124 (228)
Q Consensus 58 ~~~~~~DLg-v~~-ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l-~----~dsi~~lk~~l~~l~~~l~d~~ 124 (228)
+++|..+.+ .+. +.+..||+.-.- |.|+-|||...+++. + -.=+.=||+.||-|++++.+.+
T Consensus 12 Li~ls~~~~qpe~~~~Vr~LV~~L~~-----~~i~~EeF~~~Lq~~lns~~qP~lvPFLK~slp~Lr~~l~~~~ 80 (92)
T smart00549 12 LIQLSNDISQPEVAERVRTLVLGLVN-----GTITAEEFTSRLQEALNSPLQPYLIPFLKNSLPLLRRELLHCA 80 (92)
T ss_pred HHHHhcCCCcchHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHcCCCCchhHHHHHHhhHHHHHHHHHHH
Confidence 456666666 442 456777765443 579999999999773 2 2346778899999988885443
No 83
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=25.28 E-value=1.5e+02 Score=19.05 Aligned_cols=38 Identities=18% Similarity=0.351 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCcHHH
Q 027078 32 SKEMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRI 74 (228)
Q Consensus 32 ~~~~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed~~~ 74 (228)
......|+++|..- ...+.+-+..+++.+|++...|..
T Consensus 9 ~~~~~~Le~~f~~~-----~~P~~~~~~~la~~~~l~~~qV~~ 46 (59)
T cd00086 9 PEQLEELEKEFEKN-----PYPSREEREELAKELGLTERQVKI 46 (59)
T ss_pred HHHHHHHHHHHHhC-----CCCCHHHHHHHHHHHCcCHHHHHH
Confidence 34567788888882 257788899999999998876654
No 84
>PHA01083 hypothetical protein
Probab=24.91 E-value=1.1e+02 Score=25.51 Aligned_cols=47 Identities=13% Similarity=0.005 Sum_probs=36.6
Q ss_pred CCCCHHHHHHHHHhhCCCCCcHHHHHHHHhhcccccccccHHHHHHHhHHc
Q 027078 51 GMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKAL 101 (228)
Q Consensus 51 ~~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l 101 (228)
..|+-+-+.++++-+|+||+.+...+.+.+-+-+.. |.-|.+-.+++
T Consensus 42 ~~i~de~A~~LAe~aGiDp~eall~i~aDraetp~~----kalWesIaKKl 88 (149)
T PHA01083 42 TYISDEEAIFLAESAGIDPEIALLGCHADRNENPRA----KAIWESIAKKQ 88 (149)
T ss_pred CCCCHHHHHHHHHHhCCCHHHHHHHHHHHhcCCHHH----HHHHHHHHHHH
Confidence 368899999999999999999988888887766554 55566655554
No 85
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=24.42 E-value=94 Score=22.82 Aligned_cols=43 Identities=16% Similarity=0.349 Sum_probs=28.5
Q ss_pred HHHHHHHHHhhCCCCCcHHHHHHHHhhcccccccccHHHHHHHhHHccCCcHHHHHHhhHHHHHHhC
Q 027078 55 PEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRADTVNKLKKALPDLEKEVK 121 (228)
Q Consensus 55 ~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~l~~dsi~~lk~~l~~l~~~l~ 121 (228)
+.-+..+..|+|++++++..++- =.+.++.|++.|.+|++.++
T Consensus 47 l~~i~~L~~d~g~~l~~i~~~l~------------------------l~~~~~~l~~~l~~l~~~~~ 89 (91)
T cd04766 47 LRRIQRLTQELGVNLAGVKRILE------------------------LEEELAELRAELDELRARLR 89 (91)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHhc
Confidence 34455566678888887765553 23567777778877777664
No 86
>PLN02222 phosphoinositide phospholipase C 2
Probab=24.06 E-value=1.8e+02 Score=29.42 Aligned_cols=63 Identities=13% Similarity=0.255 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCC----CCcHHHHHHHHhhcccccccccHHHHHHHhHH
Q 027078 35 MERIDNLFYSYANKSSGMIDPEGIESLCSDIEVS----HTDVRILMLAWKMKAEKQGYFTLEEWRRGLKA 100 (228)
Q Consensus 35 ~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~----~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~ 100 (228)
+..|..+|.+|.+ .+.|+.+++.+|+.+-.=+ .++...|+=.+ -....-+.++.++|..-+..
T Consensus 24 ~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~-~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 24 PREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSA-SSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred cHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhh-hhhhhccCcCHHHHHHHhcC
Confidence 3588999999986 3589999999999986644 33333332221 12233466899999988754
No 87
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=23.69 E-value=3.3e+02 Score=20.67 Aligned_cols=68 Identities=12% Similarity=0.240 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHhcCCCCCCCCHHHHHHHHH-hhC---CCCCcHHHHH-HHHhhcccccccccHHHHHHHhHHcc
Q 027078 34 EMERIDNLFYSYANKSSGMIDPEGIESLCS-DIE---VSHTDVRILM-LAWKMKAEKQGYFTLEEWRRGLKALR 102 (228)
Q Consensus 34 ~~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~-DLg---v~~ed~~~Lv-La~~l~a~~~g~itr~eF~~g~~~l~ 102 (228)
....|..+|.+|+. +.+.++-..+..+++ .|+ -++.|+..+= +...|....=|+++-+||+.-...+.
T Consensus 6 ai~~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 6 SMEKMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 45678889999993 346788888888885 443 2344555543 55567777788899999887666553
No 88
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=23.07 E-value=1.2e+02 Score=15.33 Aligned_cols=16 Identities=38% Similarity=0.536 Sum_probs=8.6
Q ss_pred ccccccHHHHHHHhHH
Q 027078 85 KQGYFTLEEWRRGLKA 100 (228)
Q Consensus 85 ~~g~itr~eF~~g~~~ 100 (228)
.-|.++.++|...++.
T Consensus 13 ~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 13 GDGKIDFEEFKDLLKA 28 (29)
T ss_pred CCCcEeHHHHHHHHHh
Confidence 3455666666555543
No 89
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=22.97 E-value=4.8e+02 Score=22.26 Aligned_cols=83 Identities=17% Similarity=0.284 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHhhCCCCCcHHHHHHHHhh-cccccccccHHHHHHHhHHccCC--c--HHHHHHhhHHHHHHhC-C--c-
Q 027078 53 IDPEGIESLCSDIEVSHTDVRILMLAWKM-KAEKQGYFTLEEWRRGLKALRAD--T--VNKLKKALPDLEKEVK-R--P- 123 (228)
Q Consensus 53 I~~dG~~~~~~DLgv~~ed~~~LvLa~~l-~a~~~g~itr~eF~~g~~~l~~d--s--i~~lk~~l~~l~~~l~-d--~- 123 (228)
|+.+...+++.-.......-.=+-+|.++ --...|.|+|+++..-+..+-.. + .+++...+..+-.+.. | .
T Consensus 84 v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~ 163 (187)
T KOG0034|consen 84 VDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGK 163 (187)
T ss_pred cCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCc
Confidence 99999999998777665444355555554 56668999999999999886542 2 4555555566655552 2 2
Q ss_pred chhHHHHHhHhh
Q 027078 124 TNFQDFYAFAFR 135 (228)
Q Consensus 124 ~~Fk~~Y~f~F~ 135 (228)
-.|.++.++...
T Consensus 164 IsfeEf~~~v~~ 175 (187)
T KOG0034|consen 164 ISFEEFCKVVEK 175 (187)
T ss_pred CcHHHHHHHHHc
Confidence 246666665543
No 90
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=22.76 E-value=1.9e+02 Score=27.26 Aligned_cols=55 Identities=20% Similarity=0.275 Sum_probs=42.8
Q ss_pred CCHHHHHHHHHhhCCCCCcHHHHHHHHhhcccc-cccccHHHHHHHhHHccCCcHHHHHHhhHHHHHHhC
Q 027078 53 IDPEGIESLCSDIEVSHTDVRILMLAWKMKAEK-QGYFTLEEWRRGLKALRADTVNKLKKALPDLEKEVK 121 (228)
Q Consensus 53 I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~-~g~itr~eF~~g~~~l~~dsi~~lk~~l~~l~~~l~ 121 (228)
.-.+.+.+..+..| ..+..|.|||.+.... ...| .|..+++++++.|..|.-.|+
T Consensus 258 ~~~~~~~~iA~k~g---~T~~qlALawv~~~~~v~~pI-----------pG~s~ve~l~eni~Al~~~Lt 313 (336)
T KOG1575|consen 258 PILEALSKIAEKHG---CTVPQLALAWVLSNGKVSSPI-----------PGASKIEQLKENIGALSVKLT 313 (336)
T ss_pred HHHHHHHHHHHHcC---CCHHHHHHHHHHHhCCCEEec-----------CCCCcHHHHHHHHhhhhccCC
Confidence 33566778888888 4467799999997766 4555 488999999999998887776
No 91
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=22.54 E-value=1.1e+02 Score=24.57 Aligned_cols=38 Identities=8% Similarity=0.162 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCc
Q 027078 34 EMERIDNLFYSYANKSSGMIDPEGIESLCSDIEVSHTD 71 (228)
Q Consensus 34 ~~~~l~~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed 71 (228)
..+-+.++|..|-....+.-+.+.+.+.++++|++++.
T Consensus 102 ~~~~~~~lf~a~~~~~~~i~~~~~l~~~a~~~Gld~~~ 139 (192)
T cd03022 102 AEAFARAVFRALWGEGLDIADPAVLAAVAAAAGLDADE 139 (192)
T ss_pred HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHcCCCHHH
Confidence 44556788888765443545667788999999998764
No 92
>PF06992 Phage_lambda_P: Replication protein P; InterPro: IPR009731 This family consists of several Bacteriophage lambda replication protein P like proteins. The bacteriophage lambda P protein promoters replication of the phage chromosome by recruiting a key component of the cellular replication machinery to the viral origin. Specifically, P protein delivers one or more molecules of Escherichia coli DnaB helicase to a nucleoprotein structure formed by the lambda O initiator at the lambda replication origin [].; GO: 0006270 DNA-dependent DNA replication initiation
Probab=22.54 E-value=1.1e+02 Score=27.23 Aligned_cols=31 Identities=6% Similarity=0.240 Sum_probs=28.3
Q ss_pred cHHHHHHHhHHccCCcHHHHHHhhHHHHHHh
Q 027078 90 TLEEWRRGLKALRADTVNKLKKALPDLEKEV 120 (228)
Q Consensus 90 tr~eF~~g~~~l~~dsi~~lk~~l~~l~~~l 120 (228)
.|.+|+.++.+.||.|+++++.-|...++.-
T Consensus 66 aKr~Wi~~f~engI~t~eQv~~Gm~~aR~~~ 96 (233)
T PF06992_consen 66 AKRQWIKAFAENGITTMEQVRAGMRRARASE 96 (233)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcC
Confidence 4999999999999999999999999988764
No 93
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=22.40 E-value=1e+02 Score=18.81 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=19.7
Q ss_pred HHHHHHHhcCCCCcCChhhHHHHHHHHh
Q 027078 169 YLIEYLKIQSDYKVINMDQWMGFYRFCN 196 (228)
Q Consensus 169 ~W~~Fl~~~~~~k~IskD~W~~~l~F~~ 196 (228)
.|++.+.+.. .-+||++.=+.||.|.+
T Consensus 4 EW~~Li~eA~-~~Gls~eeir~FL~~~k 30 (30)
T PF08671_consen 4 EWVELIKEAK-ESGLSKEEIREFLEFNK 30 (30)
T ss_dssp HHHHHHHHHH-HTT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HcCCCHHHHHHHHHhCC
Confidence 5999998753 46899999999998853
No 94
>PF10036 RLL: Putative carnitine deficiency-associated protein; InterPro: IPR019265 This family of proteins conserved from nematodes to humans is of approximately 250 amino acids. It is purported to be carnitine deficiency-associated protein but this could not be confirmed. It carries a characteristic RLL sequence-motif. The function is unknown.
Probab=22.15 E-value=92 Score=27.77 Aligned_cols=29 Identities=21% Similarity=0.392 Sum_probs=23.2
Q ss_pred CHHHHHHHHHhhCCC-CCcHHHHHHHHhhc
Q 027078 54 DPEGIESLCSDIEVS-HTDVRILMLAWKMK 82 (228)
Q Consensus 54 ~~dG~~~~~~DLgv~-~ed~~~LvLa~~l~ 82 (228)
=++++.+||.|||.. ...-..-+|-|+++
T Consensus 56 W~~~~~kYl~dl~cP~~~~~~~~~ldWLL~ 85 (249)
T PF10036_consen 56 WPKAFEKYLKDLGCPFSSESRQEQLDWLLG 85 (249)
T ss_pred HHHHHHHHHHhcCCCCcchhHHHHHHHHHH
Confidence 367999999999999 46666777777774
No 95
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=21.87 E-value=1.5e+02 Score=19.34 Aligned_cols=30 Identities=23% Similarity=0.433 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHhcCC--CCCCCCHHHHHHHHH
Q 027078 34 EMERIDNLFYSYANK--SSGMIDPEGIESLCS 63 (228)
Q Consensus 34 ~~~~l~~lFd~Y~d~--~~~~I~~dG~~~~~~ 63 (228)
....|..+|.+|+.. +.+.+.-+.+.++++
T Consensus 4 ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~ 35 (44)
T PF01023_consen 4 AIETIIDVFHKYAGKEGDKDTLSKKELKELLE 35 (44)
T ss_dssp HHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCeEcHHHHHHHHH
Confidence 456788999999854 347788888877775
No 96
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=21.60 E-value=4.4e+02 Score=21.30 Aligned_cols=29 Identities=28% Similarity=0.470 Sum_probs=21.3
Q ss_pred hHhhhccCccccccccHHhHHHHHhhhhCC
Q 027078 132 FAFRYCLTEEKQKSVDIESVCELLGLVLGS 161 (228)
Q Consensus 132 f~F~f~~~~~~qk~L~~d~Ai~~W~lll~~ 161 (228)
|++++... =-.+.++.+.++.+|+.++.+
T Consensus 165 ~~~~w~~~-lF~~~l~~~~~~~lwD~l~~g 193 (214)
T PF00566_consen 165 YAFPWFLT-LFSRSLPFDDVLRLWDFLLEG 193 (214)
T ss_dssp HHHHHHHT-TTTTTS-HHHHHHHHHHHHHC
T ss_pred hhhhhhHh-hcCCcCCHHHHHHHHHHHHcC
Confidence 67777663 457899999999999977743
No 97
>PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents a second domain related to the SAM domain. ; GO: 0005515 protein binding; PDB: 1B0X_A 1X9X_B 1OW5_A 1V38_A 3BS7_A 3BS5_A 3TAD_A 3TAC_B 2K60_A 2DL0_A ....
Probab=21.25 E-value=2.6e+02 Score=18.66 Aligned_cols=58 Identities=16% Similarity=0.163 Sum_probs=35.9
Q ss_pred CHHHHHHHHHhhCCCCCcHHHHHHHHhh-cccccccccHHHHHHHhHHccCCcHHHHHHhhHHHH
Q 027078 54 DPEGIESLCSDIEVSHTDVRILMLAWKM-KAEKQGYFTLEEWRRGLKALRADTVNKLKKALPDLE 117 (228)
Q Consensus 54 ~~dG~~~~~~DLgv~~ed~~~LvLa~~l-~a~~~g~itr~eF~~g~~~l~~dsi~~lk~~l~~l~ 117 (228)
+++.+.+++..+|+ +...-.....-+ |+...-.+|.+.. .++|+.+...-+..+..+.
T Consensus 5 ~~~~v~~WL~~~gl--~~y~~~f~~~~i~g~~~L~~l~~~~L----~~lGI~~~~~r~kll~~i~ 63 (66)
T PF07647_consen 5 SPEDVAEWLKSLGL--EQYADNFRENGIDGLEDLLQLTEEDL----KELGITNLGHRRKLLSAIQ 63 (66)
T ss_dssp CHHHHHHHHHHTTC--GGGHHHHHHTTCSHHHHHTTSCHHHH----HHTTTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCc--HHHHHHHHHcCCcHHHHHhhCCHHHH----HHcCCCCHHHHHHHHHHHH
Confidence 46677888888877 333333333333 3355667787765 4789888877666555543
No 98
>PRK09849 putative oxidoreductase; Provisional
Probab=21.23 E-value=76 Score=32.70 Aligned_cols=31 Identities=13% Similarity=-0.005 Sum_probs=27.2
Q ss_pred HHHHHhhCCCCCcHHHHHHHHhhcccccccccH
Q 027078 59 ESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTL 91 (228)
Q Consensus 59 ~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~itr 91 (228)
..+|++||+|. +.-. +|||.|.+-..|.+++
T Consensus 370 n~Lcn~lGlDt-S~G~-tIA~amEl~ekGil~~ 400 (702)
T PRK09849 370 LNLFDDYGLWC-NYGQ-LHRDFTYCYSKGVFKR 400 (702)
T ss_pred HHHHHHhCCcc-cHHH-HHHHHHHHHHCCCCCc
Confidence 38999999999 7644 8999999999999986
No 99
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=21.02 E-value=5.8e+02 Score=22.69 Aligned_cols=61 Identities=16% Similarity=0.244 Sum_probs=46.6
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCcHHHHHHHHhhcccccccccHHHHHHHhHH
Q 027078 40 NLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKA 100 (228)
Q Consensus 40 ~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed~~~LvLa~~l~a~~~g~itr~eF~~g~~~ 100 (228)
++|.+|--+.+..|+..-+.+=+..||..+..-..=.|.-+.--..-|.+.-++|++.+-.
T Consensus 128 ~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~ 188 (221)
T KOG0037|consen 128 NVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVV 188 (221)
T ss_pred HHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHH
Confidence 4666664445588999999999999999987666666666664444899999999987655
No 100
>cd04752 Commd4 COMM_Domain containing protein 4. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=20.78 E-value=4.1e+02 Score=22.07 Aligned_cols=63 Identities=17% Similarity=0.187 Sum_probs=46.5
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHhhCCCCCcHHHH--HHHHhhcccccccccHHHHHHHhHHccCCc
Q 027078 40 NLFYSYANKSSGMIDPEGIESLCSDIEVSHTDVRIL--MLAWKMKAEKQGYFTLEEWRRGLKALRADT 105 (228)
Q Consensus 40 ~lFd~Y~d~~~~~I~~dG~~~~~~DLgv~~ed~~~L--vLa~~l~a~~~g~itr~eF~~g~~~l~~ds 105 (228)
++-..+. ++.|+.+-+.++..|+|++..++... +|.++|....--.++.++|.+-+..+|.+.
T Consensus 12 ~v~~~~~---~~~~~~~~~~kl~~~~~~~~~~lk~~va~l~fiL~~A~k~n~~~~~l~~eL~~lglp~ 76 (174)
T cd04752 12 QVLKDLL---GEGIDYEKVLKLTADAKFESGDVKASIAVLSFILSSAAKYNVDGESLSSELQQLGLPK 76 (174)
T ss_pred HHHHHHH---hccCCHHHHHHHHHHhCCCHhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCH
Confidence 4444554 34599999999999999999887644 456667433334599999999999888754
No 101
>KOG3911 consensus Nucleolar protein NOP52/RRP1 [RNA processing and modification]
Probab=20.72 E-value=6.7e+02 Score=23.90 Aligned_cols=119 Identities=18% Similarity=0.226 Sum_probs=71.2
Q ss_pred HHHHHHHHhhccccccc-ccHHHHHHHhHHcc-C----Cc---HHHHHHhhHHHHHHhCCc-------------------
Q 027078 72 VRILMLAWKMKAEKQGY-FTLEEWRRGLKALR-A----DT---VNKLKKALPDLEKEVKRP------------------- 123 (228)
Q Consensus 72 ~~~LvLa~~l~a~~~g~-itr~eF~~g~~~l~-~----ds---i~~lk~~l~~l~~~l~d~------------------- 123 (228)
-.+=+|--.+.|.+.-+ |++.+|++-|+.|- | |- -+.|...|..|+....+.
T Consensus 26 rAlr~Lrkyi~ak~~k~~F~~~dflklWKGLfY~MWmqDkPllQeeLa~~laqLv~~f~~~~a~i~F~~~FwktM~rEW~ 105 (378)
T KOG3911|consen 26 RALRKLRKYISAKTQKEGFDQDDFLKLWKGLFYCMWMQDKPLLQEELADTLAQLVHIFTSTEAQILFVSAFWKTMCREWF 105 (378)
T ss_pred HHHHHHHHHHHHHhhccCCCHHHHHHHHHhhHHHHhhcCCchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhhhc
Confidence 34445555666666544 89999999888764 2 11 123333333333322210
Q ss_pred -------ch----hHHHHHhHhhhccCccccccccHHhHHHHHhhhhCC-------------CChhhHHHHHHHHHhcCC
Q 027078 124 -------TN----FQDFYAFAFRYCLTEEKQKSVDIESVCELLGLVLGS-------------QYRAQVDYLIEYLKIQSD 179 (228)
Q Consensus 124 -------~~----Fk~~Y~f~F~f~~~~~~qk~L~~d~Ai~~W~lll~~-------------~~~~~l~~W~~Fl~~~~~ 179 (228)
.. -+.+-+++|.+.+. ++=..+.--+||+.+... .| ++++-|++=|.. -.
T Consensus 106 gIDr~RlDKflmLiRrvlr~~l~~Lk~----~~W~~~li~e~~~~~q~~~~~~~s~~np~Gi~f-Hf~dI~ldEL~k-v~ 179 (378)
T KOG3911|consen 106 GIDRLRLDKFLMLIRRVLRASLRVLKE----RNWEKDLIDEYLKVLQEWVLSPDSQSNPNGIKF-HFADILLDELDK-VG 179 (378)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH----cCchHHHHHHHHHHHHHhhcCCCCCCCCCccch-hHHHHHHHHHHH-hc
Confidence 11 36777888888863 334445555788877631 12 467788888864 45
Q ss_pred CCcCChhhHHHHHH-HHh
Q 027078 180 YKVINMDQWMGFYR-FCN 196 (228)
Q Consensus 180 ~k~IskD~W~~~l~-F~~ 196 (228)
...++.|+|+++++ |++
T Consensus 180 ~~e~~~~q~~~~~d~~~~ 197 (378)
T KOG3911|consen 180 GEELTADQNLLFIDPFCR 197 (378)
T ss_pred CCcchhhhhhcccCHHHH
Confidence 68899999998875 444
Done!