BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027081
(228 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UNF|X Chain X, The Crystal Structure Of The Eukaryotic Fesod From Vigna
Unguiculata Suggests A New Enzymatic Mechanism
Length = 238
Score = 209 bits (532), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 102/178 (57%), Positives = 121/178 (67%), Gaps = 2/178 (1%)
Query: 41 KTGGRISAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKS 100
K G +++AKF+LKPPPYPLN LEP MS+ TLEFHWGKHHR YV+NL KQ+VGTEL DGKS
Sbjct: 10 KEGPKVNAKFELKPPPYPLNGLEPVMSQQTLEFHWGKHHRTYVENLKKQVVGTEL-DGKS 68
Query: 101 LEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXX 160
LE++++ +YNKGD+LPAFNNAAQ WNHDFFW LIERDFGS
Sbjct: 69 LEEIIVTAYNKGDILPAFNNAAQVWNHDFFWECMKPGGGGKPSGELLELIERDFGSFEKF 128
Query: 161 XXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVW 218
TQFGSGWAWL YK P +++D L+V+K+PNAVNPLVW
Sbjct: 129 LDEFKAAAATQFGSGWAWLAYKASKLDGENAANPP-SADEDNKLVVIKSPNAVNPLVW 185
>pdb|1MY6|A Chain A, The 1.6 A Structure Of Fe-superoxide Dismutase From The
Thermophilic Cyanobacterium Thermosynechococcus
Elongatus : Correlation Of Epr And Structural
Characteristics
pdb|1MY6|B Chain B, The 1.6 A Structure Of Fe-superoxide Dismutase From The
Thermophilic Cyanobacterium Thermosynechococcus
Elongatus : Correlation Of Epr And Structural
Characteristics
Length = 199
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 83/169 (49%), Gaps = 20/169 (11%)
Query: 50 FDLKPPPYPLNALEPH-MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIAS 108
F +P P+ ALEP+ MS TLEFH+GKHH+ YVDNLNK TEL D KSLEDV+ +
Sbjct: 2 FVQEPLPFDPGALEPYGMSAKTLEFHYGKHHKGYVDNLNKLTQDTELAD-KSLEDVIRTT 60
Query: 109 YNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXX 168
Y + FNNAAQ WNH FFW I FGS
Sbjct: 61 YGDAAKVGIFNNAAQVWNHTFFWNSLKPGGGGVPTGDVAARINSAFGSYDEFKAQFKNAA 120
Query: 169 XTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLV 217
TQFGSGWAWLV + +L V KT NA NPLV
Sbjct: 121 ATQFGSGWAWLVLEAG------------------TLKVTKTANAENPLV 151
>pdb|3JS4|A Chain A, Crystal Structure Of Iron Superoxide Dismutase From
Anaplasma Phagocytophilum
pdb|3JS4|B Chain B, Crystal Structure Of Iron Superoxide Dismutase From
Anaplasma Phagocytophilum
pdb|3JS4|C Chain C, Crystal Structure Of Iron Superoxide Dismutase From
Anaplasma Phagocytophilum
pdb|3JS4|D Chain D, Crystal Structure Of Iron Superoxide Dismutase From
Anaplasma Phagocytophilum
Length = 227
Score = 104 bits (260), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 87/174 (50%), Gaps = 23/174 (13%)
Query: 48 AKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTE---LGDGKSLEDV 104
+ F+L PY LEP++S L+ H+ HH+ YVD LNK +VGTE LG+ +SL D+
Sbjct: 21 SMFELSDLPY--EGLEPYISSHLLDRHYNGHHKTYVDVLNKLVVGTEFEGLGN-ESLGDI 77
Query: 105 VIASYNKGDLLPA-FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXX 163
V+ ++N G A FNNAAQ WNHDF+W +IE FGS
Sbjct: 78 VVKAHNSGSAGRAIFNNAAQIWNHDFYWQSMKPNGGGNPPEKLREMIEHSFGSVEGFNNA 137
Query: 164 XXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLV 217
QFGSGW WLVY E K+L VV T NA +PL+
Sbjct: 138 FTTSGLGQFGSGWVWLVY----------------DEDAKALKVVSTANADSPLL 175
>pdb|3TQJ|A Chain A, Structure Of The Superoxide Dismutase (Fe) (Sodb) From
Coxiella Burnetii
pdb|3TQJ|B Chain B, Structure Of The Superoxide Dismutase (Fe) (Sodb) From
Coxiella Burnetii
Length = 210
Score = 103 bits (257), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 84/168 (50%), Gaps = 23/168 (13%)
Query: 50 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASY 109
F+L PY LNALEPH+S++TLE+H GKHHRAYV+ LNK I GT + + LE+++ S
Sbjct: 3 FELPDLPYKLNALEPHISQETLEYHHGKHHRAYVNKLNKLIEGTPF-EKEPLEEIIRKS- 60
Query: 110 NKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXX 169
G + FNNAAQ WNH F+W I++ FGS
Sbjct: 61 -DGGI---FNNAAQHWNHTFYWHCMSPDGGGDPSGELASAIDKTFGSLEKFKALFTDSAN 116
Query: 170 TQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLV 217
FGSGWAWLV + + L V+ T NA NP+
Sbjct: 117 NHFGSGWAWLV-----------------KDNNGKLEVLSTVNARNPMT 147
>pdb|1ISA|A Chain A, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1ISA|B Chain B, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1ISB|A Chain A, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1ISB|B Chain B, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1ISC|A Chain A, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1ISC|B Chain B, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
Length = 192
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 80/170 (47%), Gaps = 23/170 (13%)
Query: 50 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASY 109
F+L PY +AL PH+S +T+E+H+GKHH+ YV NLN I GT +GKSLE+++ +S
Sbjct: 2 FELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAF-EGKSLEEIIRSS- 59
Query: 110 NKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXX 169
+G + FNNAAQ WNH F+W I FGS
Sbjct: 60 -EGGV---FNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAI 115
Query: 170 TQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWD 219
FGSGW WLV D L +V T NA PL D
Sbjct: 116 KNFGSGWTWLV-----------------KNSDGKLAIVSTSNAGTPLTTD 148
>pdb|3H1S|A Chain A, Crystal Structure Of Superoxide Dismutase From Francisella
Tularensis Subsp. Tularensis Schu S4
pdb|3H1S|B Chain B, Crystal Structure Of Superoxide Dismutase From Francisella
Tularensis Subsp. Tularensis Schu S4
Length = 195
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 75/134 (55%), Gaps = 7/134 (5%)
Query: 47 SAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVI 106
+ KF+L PY ++ALE +SK+T+E+H+GKHH+ YV NLN + GTE DG++LE++V
Sbjct: 3 AMKFELPKLPYAVDALESTISKETIEYHYGKHHQTYVTNLNNLVEGTE-HDGRNLEEIVK 61
Query: 107 ASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXX 166
S N G FNNAAQ +NH F+W LIE FGS
Sbjct: 62 TS-NGG----IFNNAAQVFNHTFYWNCLTPNKTEASSQLKAALIET-FGSVENFKEQFSK 115
Query: 167 XXXTQFGSGWAWLV 180
FGSGWAWLV
Sbjct: 116 AAIATFGSGWAWLV 129
>pdb|2NYB|A Chain A, Crystal Structure Of E.Coli Iron Superoxide Dismutase Q69e
At 1.1 Angstrom Resolution
pdb|2NYB|B Chain B, Crystal Structure Of E.Coli Iron Superoxide Dismutase Q69e
At 1.1 Angstrom Resolution
pdb|2NYB|C Chain C, Crystal Structure Of E.Coli Iron Superoxide Dismutase Q69e
At 1.1 Angstrom Resolution
pdb|2NYB|D Chain D, Crystal Structure Of E.Coli Iron Superoxide Dismutase Q69e
At 1.1 Angstrom Resolution
pdb|2BKB|A Chain A, Q69e-Fesod
pdb|2BKB|B Chain B, Q69e-Fesod
pdb|2BKB|C Chain C, Q69e-Fesod
pdb|2BKB|D Chain D, Q69e-Fesod
Length = 192
Score = 101 bits (252), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 80/170 (47%), Gaps = 23/170 (13%)
Query: 50 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASY 109
F+L PY +AL PH+S +T+E+H+GKHH+ YV NLN I GT +GKSLE+++ +S
Sbjct: 2 FELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAF-EGKSLEEIIRSS- 59
Query: 110 NKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXX 169
+G + FNNAA+ WNH F+W I FGS
Sbjct: 60 -EGGV---FNNAAEVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAI 115
Query: 170 TQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWD 219
FGSGW WLV D L +V T NA PL D
Sbjct: 116 KNFGSGWTWLV-----------------KNSDGKLAIVSTSNAGTPLTTD 148
>pdb|1ZA5|A Chain A, Q69h-Fesod
pdb|1ZA5|B Chain B, Q69h-Fesod
Length = 192
Score = 101 bits (251), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 79/170 (46%), Gaps = 23/170 (13%)
Query: 50 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASY 109
F+L PY +AL PH+S +T+E+H+GKHH+ YV NLN I GT +GKSLE+++ +S
Sbjct: 2 FELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAF-EGKSLEEIIRSS- 59
Query: 110 NKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXX 169
+G + FNNAA WNH F+W I FGS
Sbjct: 60 -EGGV---FNNAAHVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAI 115
Query: 170 TQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWD 219
FGSGW WLV D L +V T NA PL D
Sbjct: 116 KNFGSGWTWLV-----------------KNSDGKLAIVSTSNAGTPLTTD 148
>pdb|1DT0|A Chain A, Cloning, Sequence, And Crystallographic Structure Of
Recombinant Iron Superoxide Dismutase From Pseudomonas
Ovalis
pdb|1DT0|B Chain B, Cloning, Sequence, And Crystallographic Structure Of
Recombinant Iron Superoxide Dismutase From Pseudomonas
Ovalis
pdb|1DT0|C Chain C, Cloning, Sequence, And Crystallographic Structure Of
Recombinant Iron Superoxide Dismutase From Pseudomonas
Ovalis
Length = 197
Score = 100 bits (248), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 70/133 (52%), Gaps = 6/133 (4%)
Query: 50 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASY 109
F+L P PY +AL+PH+SK+TLEFH KHH YV NLN + GTE +GK+LE++V S
Sbjct: 2 FELPPLPYAHDALQPHISKETLEFHHDKHHNTYVVNLNNLVPGTEF-EGKTLEEIVKTS- 59
Query: 110 NKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXX 169
G + FNNAAQ WNH F+W I FGS
Sbjct: 60 -SGGI---FNNAAQVWNHTFYWNCLSPNAGGQPTGALADAINAAFGSFDKFKEEFTKTSV 115
Query: 170 TQFGSGWAWLVYK 182
FGSGW WLV K
Sbjct: 116 GTFGSGWGWLVKK 128
>pdb|3SDP|A Chain A, The 2.1 Angstroms Resolution Structure Of Iron Superoxide
Dismutase From Pseudomonas Ovalis
pdb|3SDP|B Chain B, The 2.1 Angstroms Resolution Structure Of Iron Superoxide
Dismutase From Pseudomonas Ovalis
Length = 195
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 70/131 (53%), Gaps = 5/131 (3%)
Query: 50 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASY 109
F+L P PY +AL+PH+SK+TLE+H KHH YV NLN + GT +GK+LE++V +S
Sbjct: 2 FELPPLPYAHDALQPHISKETLEYHHDKHHNTYVVNLNNLVPGTPEFEGKTLEEIVKSS- 60
Query: 110 NKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXX 169
G + FNNAAQ WNH F+W I FGS
Sbjct: 61 -SGGI---FNNAAQVWNHTFYWNCLSPDAGGQPTGALADAINAAFGSFDKFKEEFTKTSV 116
Query: 170 TQFGSGWAWLV 180
FGSGWAWLV
Sbjct: 117 GTFGSGWAWLV 127
>pdb|3LIO|A Chain A, X-Ray Structure Of The Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form I)
pdb|3LIO|B Chain B, X-Ray Structure Of The Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form I)
pdb|3LJ9|A Chain A, X-Ray Structure Of The Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis In Complex With Sodium
Azide
pdb|3LJ9|B Chain B, X-Ray Structure Of The Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis In Complex With Sodium
Azide
pdb|3LJF|A Chain A, The X-Ray Structure Of Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form Ii)
pdb|3LJF|C Chain C, The X-Ray Structure Of Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form Ii)
pdb|3LJF|B Chain B, The X-Ray Structure Of Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form Ii)
pdb|3LJF|D Chain D, The X-Ray Structure Of Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form Ii)
Length = 192
Score = 96.7 bits (239), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 81/179 (45%), Gaps = 24/179 (13%)
Query: 50 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASY 109
F+L PY ++ALEPH+SK+TLEFH GKHH YV LN I GT+ + KSLE++V +S
Sbjct: 2 FELPSLPYAIDALEPHISKETLEFHHGKHHNTYVVKLNGLIPGTKF-ENKSLEEIVCSSD 60
Query: 110 NKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXX 169
FNNAAQ WNH F+W I +GS
Sbjct: 61 GG-----VFNNAAQIWNHTFYWNSLSPNGGGAPTGAVADAINAKWGSFDAFKEALNDKAV 115
Query: 170 TQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSVSSSLTC 228
FGS W WLV D SL +V T NA PL D V+ LT
Sbjct: 116 NNFGSSWTWLV-----------------KLADGSLDIVNTSNAATPLT-DDGVTPILTV 156
>pdb|2W7W|A Chain A, The Crystal Structure Of Iron Superoxide Dismutase From
Aliivibrio Salmonicida.
pdb|2W7W|B Chain B, The Crystal Structure Of Iron Superoxide Dismutase From
Aliivibrio Salmonicida
Length = 194
Score = 93.6 bits (231), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 80/180 (44%), Gaps = 24/180 (13%)
Query: 49 KFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIAS 108
F+L P+ +ALEPH+S +TL++H GKHH YV LN I GTE +GK+LE+++ S
Sbjct: 2 SFELPALPFAKDALEPHISAETLDYHHGKHHNTYVVKLNGLIPGTEF-EGKTLEEIIKTS 60
Query: 109 YNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXX 168
FNNAAQ WNH F+W I+ FGS
Sbjct: 61 TGG-----VFNNAAQIWNHTFYWNCLAPNAGGQPTGAVAAAIDAAFGSFEEFKAKFTDSA 115
Query: 169 XTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSVSSSLTC 228
FGS W WLV D SL +V T NA PL D V+ LT
Sbjct: 116 INNFGSSWTWLV-----------------KNADGSLAIVNTSNAATPLT-DEGVTPLLTV 157
>pdb|2CW2|A Chain A, Crystal Structure Of Superoxide Dismutase From P. Marinus
pdb|2CW2|B Chain B, Crystal Structure Of Superoxide Dismutase From P. Marinus
Length = 226
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 65/145 (44%), Gaps = 5/145 (3%)
Query: 36 KMEQRKTGGRISAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTEL 95
+M + ++ F P PY NALEPHMS +TL +H KHH+ YVD LN
Sbjct: 19 RMGLARCFSSVTGPFQCPPLPYVKNALEPHMSAETLTYHHDKHHQTYVDTLNSIAAENST 78
Query: 96 GDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFG 155
K+LE ++ K + FN AAQ +NH FF+ LI RDFG
Sbjct: 79 IASKTLEQII-----KTETGKPFNQAAQVYNHTFFFNNLAPNGGGEPTGKIAELITRDFG 133
Query: 156 SXXXXXXXXXXXXXTQFGSGWAWLV 180
S FGSGW WL+
Sbjct: 134 SFEKFKEDFSAAAVGHFGSGWVWLI 158
>pdb|2A03|A Chain A, Superoxide Dismutase Protein From Plasmodium Berghei
pdb|2A03|B Chain B, Superoxide Dismutase Protein From Plasmodium Berghei
Length = 206
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 78/172 (45%), Gaps = 24/172 (13%)
Query: 57 YPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLP 116
Y LNAL PH+S++TL FH+ KHH YV+ LN I T L + KSL D++ K
Sbjct: 18 YALNALSPHISEETLSFHYNKHHAGYVNKLNGLIKDTPLAN-KSLTDIL-----KESTGA 71
Query: 117 AFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGW 176
FNNAAQ WNH F+W I+ DFGS FGSGW
Sbjct: 72 IFNNAAQIWNHSFYWDSMGPNCGGEPHGEIKEKIQEDFGSFNNFKDQFSNVLCGHFGSGW 131
Query: 177 AWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSVSSSLTC 228
WL K+ L++++T +A NP+ + + LTC
Sbjct: 132 GWLALN-----------------KNNKLVILQTHDAGNPIKENTGI-PILTC 165
>pdb|2BPI|A Chain A, Stucture Of Iron Dependent Superoxide Dismutase From P.
Falciparum.
pdb|2BPI|B Chain B, Stucture Of Iron Dependent Superoxide Dismutase From P.
Falciparum
Length = 206
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 76/172 (44%), Gaps = 24/172 (13%)
Query: 57 YPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLP 116
Y LNAL PH+S++TL FH+ KHH YV+ LN I T + KSL D+V S
Sbjct: 10 YALNALSPHISEETLNFHYNKHHAGYVNKLNTLIKDTPFAE-KSLLDIVKESSG-----A 63
Query: 117 AFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGW 176
FNNAAQ WNH F+W I+ DFGS FGSGW
Sbjct: 64 IFNNAAQIWNHTFYWDSMGPDCGGEPHGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGW 123
Query: 177 AWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSVSSSLTC 228
WL + L++++T +A NP+ D + LTC
Sbjct: 124 GWLALN-----------------NNNKLVILQTHDAGNPIK-DNTGIPILTC 157
>pdb|2GOJ|A Chain A, The Crystal Structure Of The Enzyme Fe-Superoxide
Dismutase From Plasmodium Falciparum
pdb|2GOJ|B Chain B, The Crystal Structure Of The Enzyme Fe-Superoxide
Dismutase From Plasmodium Falciparum
Length = 197
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 76/172 (44%), Gaps = 24/172 (13%)
Query: 57 YPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLP 116
Y LNAL PH+S++TL FH+ KHH YV+ LN I T + KSL D+V S
Sbjct: 9 YALNALSPHISEETLNFHYNKHHAGYVNKLNTLIKDTPFAE-KSLLDIVKESSG-----A 62
Query: 117 AFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGW 176
FNNAAQ WNH F+W I+ DFGS FGSGW
Sbjct: 63 IFNNAAQIWNHTFYWDSMGPDCGGEPHGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGW 122
Query: 177 AWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSVSSSLTC 228
WL + L++++T +A NP+ D + LTC
Sbjct: 123 GWLALN-----------------NNNKLVILQTHDAGNPIK-DNTGIPILTC 156
>pdb|1UES|A Chain A, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UES|B Chain B, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UES|C Chain C, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UES|D Chain D, Crystal Structure Of Porphyromonas Gingivalis Sod
Length = 191
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 78/166 (46%), Gaps = 23/166 (13%)
Query: 51 DLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYN 110
+L PY ++AL P +SK+T+EFH GKH + YVDNLNK I+GTE + L +V S
Sbjct: 4 ELISLPYAVDALAPVISKETVEFHHGKHLKTYVDNLNKLIIGTEF-ENADLNTIVQKS-- 60
Query: 111 KGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXT 170
+G + FNNA Q NH+ ++ I++ FGS T
Sbjct: 61 EGGI---FNNAGQTLNHNLYFTQFRPGKGGAPKGKLGEAIDKQFGSFEKFKEEFNTAGTT 117
Query: 171 QFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPL 216
FGSGW WL S+ + L + K PNA NP+
Sbjct: 118 LFGSGWVWLA-----------------SDANGKLSIEKEPNAGNPV 146
>pdb|1QNN|A Chain A, Cambialistic Superoxide Dismutase From Porphyromonas
Gingivalis
pdb|1QNN|B Chain B, Cambialistic Superoxide Dismutase From Porphyromonas
Gingivalis
pdb|1QNN|C Chain C, Cambialistic Superoxide Dismutase From Porphyromonas
Gingivalis
pdb|1QNN|D Chain D, Cambialistic Superoxide Dismutase From Porphyromonas
Gingivalis
pdb|1UER|A Chain A, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UER|B Chain B, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UER|C Chain C, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UER|D Chain D, Crystal Structure Of Porphyromonas Gingivalis Sod
Length = 191
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 78/166 (46%), Gaps = 23/166 (13%)
Query: 51 DLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYN 110
+L PY ++AL P +SK+T+EFH GKH + YVDNLNK I+GTE + L +V S
Sbjct: 4 ELISLPYAVDALAPVISKETVEFHHGKHLKTYVDNLNKLIIGTEF-ENADLNTIVQKS-- 60
Query: 111 KGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXT 170
+G + FNNA Q NH+ ++ I++ FGS T
Sbjct: 61 EGGI---FNNAGQTLNHNLYFTQFRPGKGGAPKGKLGEAIDKQFGSFEKFKEEFNTAGTT 117
Query: 171 QFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPL 216
FGSGW WL S+ + L + K PNA NP+
Sbjct: 118 LFGSGWVWLA-----------------SDANGKLSIEKEPNAGNPV 146
>pdb|2AWP|A Chain A, Crystal Structure Of Plasmodium Knowlesi Structure Of Iron
Super-Oxide Dismutase
pdb|2AWP|B Chain B, Crystal Structure Of Plasmodium Knowlesi Structure Of Iron
Super-Oxide Dismutase
Length = 198
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 76/172 (44%), Gaps = 24/172 (13%)
Query: 57 YPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLP 116
Y LNAL PH+S++TL FH+ KHH YV+ LN I T KSL +++ K
Sbjct: 10 YALNALSPHISEETLNFHYNKHHAGYVNKLNGLIKDTPFAT-KSLVEIM-----KESTGA 63
Query: 117 AFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGW 176
FNNAAQ WNH F+W I+ DFGS FGSGW
Sbjct: 64 IFNNAAQIWNHSFYWDSMGPNCGGEPHGEIKEKIQEDFGSFNNFKNEFSNVLCGHFGSGW 123
Query: 177 AWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSVSSSLTC 228
WLV + L++++T +A NP+ D + LTC
Sbjct: 124 GWLVLN-----------------NNNKLVILQTHDAGNPIK-DNTGIPILTC 157
>pdb|1XUQ|A Chain A, Crystal Structure Of Soda-1 (Ba4499) From Bacillus
Anthracis At 1.8a Resolution.
pdb|1XUQ|B Chain B, Crystal Structure Of Soda-1 (Ba4499) From Bacillus
Anthracis At 1.8a Resolution
Length = 212
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 71/173 (41%), Gaps = 22/173 (12%)
Query: 48 AKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVG-TELGDGKSLEDVV- 105
AK +L PY +ALEPH K+T+ H KHH Y+ NLN + G EL D KS+E++V
Sbjct: 11 AKHELPNLPYAYDALEPHFDKETMNIHHTKHHNTYITNLNAALEGHAELAD-KSVEELVA 69
Query: 106 -IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXX 164
+ + NN NH FFW IE FGS
Sbjct: 70 NLNEVPEAIRTAVRNNGGGHANHTFFWTILSPNGGGQPVGELATAIEAKFGSFDAFKEEF 129
Query: 165 XXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLV 217
T+FGSGWAWLV + L V TPN +PL
Sbjct: 130 AKAGATRFGSGWAWLVV------------------NNGELEVTSTPNQDSPLT 164
>pdb|1Y67|A Chain A, Crystal Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans
pdb|1Y67|B Chain B, Crystal Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans
pdb|1Y67|C Chain C, Crystal Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans
pdb|1Y67|D Chain D, Crystal Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans
pdb|2AW9|A Chain A, Superoxide Dismutase With Manganese From Deinococcus
Radiodurans
pdb|2AW9|B Chain B, Superoxide Dismutase With Manganese From Deinococcus
Radiodurans
Length = 229
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 73/179 (40%), Gaps = 31/179 (17%)
Query: 48 AKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV-- 105
A + L PY +ALEPH+ T+E H KHH+ YVDN NK + GTE D +E ++
Sbjct: 2 AAYTLPQLPYAYDALEPHIDARTMEIHHTKHHQTYVDNANKALEGTEFAD-LPVEQLIQQ 60
Query: 106 ---IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXX----XXXLIERDFGSXX 158
+ + KG L NNA NH FW I FGS
Sbjct: 61 LDRVPADKKGALR---NNAGGHANHSMFWQIMGQGQGQNGANQPSGELLDAINSAFGSFD 117
Query: 159 XXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLV 217
T+FGSGWAWLV KD L VV T N NPL+
Sbjct: 118 AFKQKFEDAAKTRFGSGWAWLVV------------------KDGKLDVVSTANQDNPLM 158
>pdb|3TJT|A Chain A, Crystal Structure Analysis Of The Superoxide Dismutase
From Clostridium Difficile
Length = 208
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 77/170 (45%), Gaps = 20/170 (11%)
Query: 49 KFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--I 106
KF +KP PY +ALEP++ K+T++ H KH++AYVD LN + SL +++ +
Sbjct: 5 KFKVKPLPYAYDALEPYIDKETMKLHHDKHYQAYVDKLNAALEKYPELYNYSLCELLQNL 64
Query: 107 ASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXX 166
S K NNA A+NH FF+ I+RDFGS
Sbjct: 65 DSLPKDIATTVRNNAGGAYNHKFFFDIMTPEKTIPSESLKEA-IDRDFGSFEKFKQEFQK 123
Query: 167 XXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPL 216
FGSGWAWLV + KD L ++ TPN +P+
Sbjct: 124 SALDVFGSGWAWLV-----------------ATKDGKLSIMTTPNQDSPV 156
>pdb|2CDY|A Chain A, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CDY|B Chain B, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CDY|C Chain C, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CDY|D Chain D, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CE4|A Chain A, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CE4|B Chain B, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
Length = 231
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 72/178 (40%), Gaps = 33/178 (18%)
Query: 50 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASY 109
+ L PY +ALEPH+ T+E H KHH+ YVDN NK + GTE D +E ++
Sbjct: 23 YTLPQLPYAYDALEPHIDARTMEIHHTKHHQTYVDNANKALEGTEFAD-LPVEQLI---- 77
Query: 110 NKGDLLPA------FNNAAQAWNHDFFWXXXXXXXXXXXXXX----XXXLIERDFGSXXX 159
+ D +PA NNA NH FW I FGS
Sbjct: 78 QQLDRVPADKKGALRNNAGGHANHSMFWQIMGQGQGQNGANQPSGELLDAINSAFGSFDA 137
Query: 160 XXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLV 217
T+FGSGWAWLV KD L VV T N NPL+
Sbjct: 138 FKQKFEDAAKTRFGSGWAWLVV------------------KDGKLDVVSTANQDNPLM 177
>pdb|3KKY|A Chain A, Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans In The Orthorhombic Space Group
P212121: A Case Study Of Mistaken Identity
pdb|3KKY|B Chain B, Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans In The Orthorhombic Space Group
P212121: A Case Study Of Mistaken Identity
Length = 211
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 72/177 (40%), Gaps = 31/177 (17%)
Query: 50 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV---- 105
+ L PY +ALEPH+ T+E H KHH+ YVDN NK + GTE D +E ++
Sbjct: 3 YTLPQLPYAYDALEPHIDARTMEIHHTKHHQTYVDNANKALEGTEFAD-LPVEQLIQQLD 61
Query: 106 -IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXX----XXXLIERDFGSXXXX 160
+ + KG L NNA NH FW I FGS
Sbjct: 62 RVPADKKGALR---NNAGGHANHSMFWQIMGQGQGQNGANQPSGELLDAINSAFGSFDAF 118
Query: 161 XXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLV 217
T+FGSGWAWLV KD L VV T N NPL+
Sbjct: 119 KQKFEDAAKTRFGSGWAWLVV------------------KDGKLDVVSTANQDNPLM 157
>pdb|3CEI|A Chain A, Crystal Structure Of Superoxide Dismutase From
Helicobacter Pylori
pdb|3CEI|B Chain B, Crystal Structure Of Superoxide Dismutase From
Helicobacter Pylori
Length = 213
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 75/168 (44%), Gaps = 23/168 (13%)
Query: 50 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASY 109
F L+ P+ +++ +S +FH GKHH+ YV+NLN I GT+ + SL ++ S
Sbjct: 2 FTLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTDF-EKSSLFAILTKSS 60
Query: 110 NKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXX 169
FNNAAQ +NHDF+W L E+DFGS
Sbjct: 61 G-----GVFNNAAQIYNHDFYWDCLSPKATALSDELKGAL-EKDFGSLEKFKEDFIKSAT 114
Query: 170 TQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLV 217
T FGSGW W Y L ++K + +++T NA P+
Sbjct: 115 TLFGSGWNWAAYN-------------LDTQK---IEIIQTSNAQTPVT 146
>pdb|4F2N|A Chain A, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|B Chain B, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|C Chain C, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|D Chain D, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|E Chain E, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|F Chain F, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|G Chain G, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|H Chain H, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|I Chain I, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|J Chain J, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|K Chain K, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|L Chain L, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
Length = 230
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 66/158 (41%), Gaps = 20/158 (12%)
Query: 60 NALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFN 119
+ ++P MS LE H+ KHH AYVD LN G E GK++E++++A+ + FN
Sbjct: 44 DGIQPVMSPRQLELHYSKHHSAYVDKLNTLGKGYE---GKTIEEIILATTGINESKVMFN 100
Query: 120 NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWL 179
AAQ +NH FFW I + FGS FGSGW WL
Sbjct: 101 QAAQHFNHSFFWKCLSPGGKPMPKTLENA-IAKQFGSVDDFMVSFQQAGVNNFGSGWTWL 159
Query: 180 VYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLV 217
+ K LL+ T NA PL
Sbjct: 160 CV----------------DPQTKELLIDSTSNAGCPLT 181
>pdb|1EN6|A Chain A, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
pdb|1EN6|B Chain B, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
pdb|1EN6|C Chain C, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
pdb|1EN6|D Chain D, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
Length = 205
Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 61/139 (43%), Gaps = 12/139 (8%)
Query: 50 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASY 109
+ L PY +ALEPH K T+E H KHH+ YV+N N + +E+++
Sbjct: 2 YTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELI---- 57
Query: 110 NKGDLLPA------FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXX 163
K D LPA NNA NH FW IERDFGS
Sbjct: 58 TKLDQLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAE 115
Query: 164 XXXXXXTQFGSGWAWLVYK 182
++FGSGWAWLV K
Sbjct: 116 FEKAAASRFGSGWAWLVLK 134
>pdb|1I0H|A Chain A, Crystal Structure Of The E. Coli Manganese Superoxide
Dismutase Mutant Y174f At 1.35 Angstroms Resolution.
pdb|1I0H|B Chain B, Crystal Structure Of The E. Coli Manganese Superoxide
Dismutase Mutant Y174f At 1.35 Angstroms Resolution.
pdb|1IX9|A Chain A, Crystal Structure Of The E. Coli Manganase(Iii) Superoxide
Dismutase Mutant Y174f At 0.90 Angstroms Resolution.
pdb|1IX9|B Chain B, Crystal Structure Of The E. Coli Manganase(Iii) Superoxide
Dismutase Mutant Y174f At 0.90 Angstroms Resolution.
pdb|1IXB|A Chain A, Crystal Structure Of The E. Coli Manganese(Ii) Superoxide
Dismutase Mutant Y174f At 0.90 Angstroms Resolution.
pdb|1IXB|B Chain B, Crystal Structure Of The E. Coli Manganese(Ii) Superoxide
Dismutase Mutant Y174f At 0.90 Angstroms Resolution.
pdb|1ZLZ|A Chain A, Re-Evaluation Of The Low-Temperature Azide In Mn-Dependent
Superoxide Dismutase
pdb|1ZLZ|B Chain B, Re-Evaluation Of The Low-Temperature Azide In Mn-Dependent
Superoxide Dismutase
Length = 205
Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 61/139 (43%), Gaps = 12/139 (8%)
Query: 50 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASY 109
+ L PY +ALEPH K T+E H KHH+ YV+N N + +E+++
Sbjct: 2 YTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELI---- 57
Query: 110 NKGDLLPA------FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXX 163
K D LPA NNA NH FW IERDFGS
Sbjct: 58 TKLDQLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAE 115
Query: 164 XXXXXXTQFGSGWAWLVYK 182
++FGSGWAWLV K
Sbjct: 116 FEKAAASRFGSGWAWLVLK 134
>pdb|1VEW|A Chain A, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1VEW|B Chain B, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1VEW|C Chain C, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1VEW|D Chain D, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1MMM|A Chain A, Distinct Metal Environment In Iron-Substituted Manganese
Superoxide Dismutase Provides A Structural Basis Of
Metal Specificity
pdb|1MMM|B Chain B, Distinct Metal Environment In Iron-Substituted Manganese
Superoxide Dismutase Provides A Structural Basis Of
Metal Specificity
pdb|1D5N|A Chain A, Crystal Structure Of E. Coli Mnsod At 100k
pdb|1D5N|B Chain B, Crystal Structure Of E. Coli Mnsod At 100k
pdb|1D5N|C Chain C, Crystal Structure Of E. Coli Mnsod At 100k
pdb|1D5N|D Chain D, Crystal Structure Of E. Coli Mnsod At 100k
pdb|3K9S|A Chain A, Crystal Structure Of The Peroxide-Bound Manganese
Superoxide Dismutase.
pdb|3K9S|B Chain B, Crystal Structure Of The Peroxide-Bound Manganese
Superoxide Dismutase.
pdb|3K9S|C Chain C, Crystal Structure Of The Peroxide-Bound Manganese
Superoxide Dismutase.
pdb|3K9S|D Chain D, Crystal Structure Of The Peroxide-Bound Manganese
Superoxide Dismutase.
pdb|3OT7|A Chain A, Escherichia Coli Apo-Manganese Superoxide Dismutase
pdb|3OT7|B Chain B, Escherichia Coli Apo-Manganese Superoxide Dismutase
pdb|3OT7|C Chain C, Escherichia Coli Apo-Manganese Superoxide Dismutase
pdb|3OT7|D Chain D, Escherichia Coli Apo-Manganese Superoxide Dismutase
Length = 205
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 61/139 (43%), Gaps = 12/139 (8%)
Query: 50 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASY 109
+ L PY +ALEPH K T+E H KHH+ YV+N N + +E+++
Sbjct: 2 YTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELI---- 57
Query: 110 NKGDLLPA------FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXX 163
K D LPA NNA NH FW IERDFGS
Sbjct: 58 TKLDQLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAE 115
Query: 164 XXXXXXTQFGSGWAWLVYK 182
++FGSGWAWLV K
Sbjct: 116 FEKAAASRFGSGWAWLVLK 134
>pdb|1EN4|A Chain A, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
pdb|1EN4|B Chain B, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
pdb|1EN4|C Chain C, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
pdb|1EN4|D Chain D, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
Length = 205
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 61/139 (43%), Gaps = 12/139 (8%)
Query: 50 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASY 109
+ L PY +ALEPH K T+E H KHH+ YV+N N + +E+++
Sbjct: 2 YTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELIT--- 58
Query: 110 NKGDLLPA------FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXX 163
K D LPA NNA NH FW IERDFGS
Sbjct: 59 -KLDQLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAE 115
Query: 164 XXXXXXTQFGSGWAWLVYK 182
++FGSGWAWLV K
Sbjct: 116 FEKAAASRFGSGWAWLVLK 134
>pdb|2RCV|A Chain A, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|B Chain B, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|C Chain C, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|D Chain D, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|E Chain E, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|F Chain F, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|G Chain G, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|H Chain H, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
Length = 202
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 58/133 (43%), Gaps = 2/133 (1%)
Query: 50 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IA 107
++L PY +ALEPH+ K+T+ H KHH YV NLNK + G KS+E++V +
Sbjct: 3 YELPELPYAYDALEPHIDKETMTIHHTKHHNTYVTNLNKAVEGNTALANKSVEELVADLD 62
Query: 108 SYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXX 167
S + NN NH FW I FGS
Sbjct: 63 SVPENIRTAVRNNGGGHANHKLFWTLLSPNGGGEPTGALAEEINSVFGSFDKFKEQFAAA 122
Query: 168 XXTQFGSGWAWLV 180
+FGSGWAWLV
Sbjct: 123 AAGRFGSGWAWLV 135
>pdb|1EN5|A Chain A, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
pdb|1EN5|B Chain B, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
pdb|1EN5|C Chain C, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
pdb|1EN5|D Chain D, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
Length = 205
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 61/139 (43%), Gaps = 12/139 (8%)
Query: 50 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASY 109
+ L PY +ALEPH K T+E H KHH+ +V+N N + +E+++
Sbjct: 2 YTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTFVNNANAALESLPEFANLPVEELI---- 57
Query: 110 NKGDLLPA------FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXX 163
K D LPA NNA NH FW IERDFGS
Sbjct: 58 TKLDQLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAE 115
Query: 164 XXXXXXTQFGSGWAWLVYK 182
++FGSGWAWLV K
Sbjct: 116 FEKAAASRFGSGWAWLVLK 134
>pdb|1I08|A Chain A, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
pdb|1I08|B Chain B, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
pdb|1I08|C Chain C, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
pdb|1I08|D Chain D, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
Length = 205
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 60/139 (43%), Gaps = 12/139 (8%)
Query: 50 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASY 109
+ L PY +ALEPH K T+E H K H+ YV+N N + +E+++
Sbjct: 2 YTLPSLPYAYDALEPHFDKQTMEIHHTKAHQTYVNNANAALESLPEFANLPVEELI---- 57
Query: 110 NKGDLLPA------FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXX 163
K D LPA NNA NH FW IERDFGS
Sbjct: 58 TKLDQLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAE 115
Query: 164 XXXXXXTQFGSGWAWLVYK 182
++FGSGWAWLV K
Sbjct: 116 FEKAAASRFGSGWAWLVLK 134
>pdb|4H3E|A Chain A, Crystal Structure Of A Putative Iron Superoxide Dismutase
From Trypanosoma Cruzi Bound To Iron
pdb|4H3E|B Chain B, Crystal Structure Of A Putative Iron Superoxide Dismutase
From Trypanosoma Cruzi Bound To Iron
Length = 241
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 69/158 (43%), Gaps = 18/158 (11%)
Query: 60 NALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFN 119
+ P S +E H+ KHH+AYVD LN + GT DGKS+E++++A N + FN
Sbjct: 53 DGCAPVFSPRQMELHYTKHHKAYVDKLNA-LAGTTY-DGKSIEEIILAVANDAEKKGLFN 110
Query: 120 NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWL 179
AAQ +NH F++ + + FGS FGSGW WL
Sbjct: 111 QAAQHFNHTFYFRCITPNGKAMPKSFESAVTAQ-FGSVEQFKDAFVQAGVNNFGSGWTWL 169
Query: 180 VYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLV 217
PS K++ L++ T NA PL
Sbjct: 170 CVD--------------PSNKNQ-LVIDNTSNAGCPLT 192
>pdb|1JR9|A Chain A, Crystal Structure Of Manganese Superoxide Dismutases From
Bacillus Halodenitrificans
Length = 202
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 57/135 (42%), Gaps = 2/135 (1%)
Query: 48 AKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV-- 105
AKF+L PY +ALEP + K+T+ H KHH YV LN + G E KSL D++
Sbjct: 1 AKFELPELPYAYDALEPTIDKETMNIHHTKHHNTYVTKLNGALEGHEDLKNKSLNDLISN 60
Query: 106 IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXX 165
+ + + NN NH FW I +GS
Sbjct: 61 LDAVPENIRTAVRNNGGGHANHSLFWKLMSPNGGGKPTGEVADKINDKYGSFEKFQEEFA 120
Query: 166 XXXXTQFGSGWAWLV 180
+FGSGWAWLV
Sbjct: 121 AAAAGRFGSGWAWLV 135
>pdb|3ESF|A Chain A, Crystal Structure Of The Enzyme Fe-Superoxide Dismutase
Tbsodb2 From Trypanosoma Brucei
pdb|3ESF|B Chain B, Crystal Structure Of The Enzyme Fe-Superoxide Dismutase
Tbsodb2 From Trypanosoma Brucei
pdb|3ESF|C Chain C, Crystal Structure Of The Enzyme Fe-Superoxide Dismutase
Tbsodb2 From Trypanosoma Brucei
pdb|3ESF|D Chain D, Crystal Structure Of The Enzyme Fe-Superoxide Dismutase
Tbsodb2 From Trypanosoma Brucei
Length = 197
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 57/132 (43%), Gaps = 6/132 (4%)
Query: 50 FDLKPPPYPLNALEPH-MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIAS 108
F + P P+ + L +SK+ + FH+ KHH YV LN KS+E+++
Sbjct: 3 FSIPPLPWGYDGLAAKGISKEQVTFHYDKHHMGYVTKLNAAANSNPALAAKSVEEII--- 59
Query: 109 YNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXX 168
+ + P FN AAQ +NH+F+W I FGS
Sbjct: 60 --RTEKGPIFNLAAQIFNHNFYWESMSPNGGGEPSGKLAEAIRASFGSFAKFKEEFTNAA 117
Query: 169 XTQFGSGWAWLV 180
FGSGWAWLV
Sbjct: 118 VGHFGSGWAWLV 129
>pdb|3MDS|A Chain A, Maganese Superoxide Dismutase From Thermus Thermophilus
pdb|3MDS|B Chain B, Maganese Superoxide Dismutase From Thermus Thermophilus
pdb|1MNG|A Chain A, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1MNG|B Chain B, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
Length = 203
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 66/174 (37%), Gaps = 19/174 (10%)
Query: 50 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IA 107
F L YP ALEPH+ T+E H KHH AYV NLN + G +E ++ +A
Sbjct: 4 FKLPDLGYPYEALEPHIDAKTMEIHHQKHHGAYVTNLNAALEKYPYLHGVEVEVLLRHLA 63
Query: 108 SYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXX 167
+ + NN NH FW I+ FG
Sbjct: 64 ALPQDIQTAVRNNGGGHLNHSLFWRLLTPGGAKEPVGELKKAIDEQFGGFQALKEKLTQA 123
Query: 168 XXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS 221
+FGSGWAWLV + L V+ TPN NP++ ++
Sbjct: 124 AMGRFGSGWAWLV-----------------KDPFGKLHVLSTPNQDNPVMEGFT 160
>pdb|2GPC|A Chain A, The Crystal Structure Of The Enzyme Fe-Superoxide
Dismutase From Trypanosoma Cruzi
pdb|2GPC|B Chain B, The Crystal Structure Of The Enzyme Fe-Superoxide
Dismutase From Trypanosoma Cruzi
Length = 194
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 56/132 (42%), Gaps = 6/132 (4%)
Query: 50 FDLKPPPYPLNALEPH-MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIAS 108
F + P P+ + L +SK + H+ KHH+ YV LN KS+E+++
Sbjct: 2 FSIPPLPWGYDGLAAKGLSKQQVTLHYDKHHQGYVTKLNAAAQTNSALATKSIEEII--- 58
Query: 109 YNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXX 168
+ + P FN AAQ +NH F+W I FGS
Sbjct: 59 --RTEKGPIFNLAAQIFNHTFYWESMXPNGGGEPTGKVADEINASFGSFAKFKEEFTNVA 116
Query: 169 XTQFGSGWAWLV 180
FGSGWAWLV
Sbjct: 117 VGHFGSGWAWLV 128
>pdb|1GV3|A Chain A, The 2.0 Angstrom Resolution Structure Of The Catalytic
Portion Of A Cyanobacterial Membrane-Bound Manganese
Superoxide Dismutase
pdb|1GV3|B Chain B, The 2.0 Angstrom Resolution Structure Of The Catalytic
Portion Of A Cyanobacterial Membrane-Bound Manganese
Superoxide Dismutase
Length = 248
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 64/169 (37%), Gaps = 19/169 (11%)
Query: 51 DLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IAS 108
+L P PY +ALE + +T++ H KHH AYV+NLN + S+E ++ + S
Sbjct: 39 ELPPLPYGYDALEKAIDAETMKLHHDKHHAAYVNNLNNALKKHPELQNSSVEALLRDLNS 98
Query: 109 YNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXX 168
+ NN NH FW I + FGS
Sbjct: 99 VPEDIRTTVRNNGGGHLNHTIFWQIMSPDGGGQPTGDIAQEINQTFGSFEEFKKQFNQAG 158
Query: 169 XTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLV 217
+FGSGW WLV L VV TPN NP++
Sbjct: 159 GDRFGSGWVWLV-----------------RNPQGQLQVVSTPNQDNPIM 190
>pdb|1XRE|A Chain A, Crystal Structure Of Soda-2 (Ba5696) From Bacillus
Anthracis At 1.8a Resolution.
pdb|1XRE|B Chain B, Crystal Structure Of Soda-2 (Ba5696) From Bacillus
Anthracis At 1.8a Resolution
Length = 217
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 2/133 (1%)
Query: 50 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IA 107
F L Y + LEP++ +TL H GKHH YV+NLN + KSLE+++ +
Sbjct: 13 FQLPKLSYDYDELEPYIDSNTLSIHHGKHHATYVNNLNAALENYSELHNKSLEELLCNLE 72
Query: 108 SYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXX 167
+ K + NN + H FW +I+ F +
Sbjct: 73 TLPKEIVTAVRNNGGGHYCHSLFWEVMSPRGGGEPNGDVAKVIDYYFNTFDNLKDQLSKA 132
Query: 168 XXTQFGSGWAWLV 180
++FGSG+ WLV
Sbjct: 133 AISRFGSGYGWLV 145
>pdb|2CW3|A Chain A, X-Ray Structure Of Pmsod2, Superoxide Dismutase From
Perkinsus Marinus
pdb|2CW3|B Chain B, X-Ray Structure Of Pmsod2, Superoxide Dismutase From
Perkinsus Marinus
Length = 280
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 73/176 (41%), Gaps = 23/176 (13%)
Query: 56 PYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGK-SLEDVVIASYNKGDL 114
PY L ALEP +S T++FH+ KHH+ Y+ L + T L + + +L+ +V ++
Sbjct: 85 PYGLEALEPVISAATVDFHYNKHHQGYIQKL---LDATGLPESRINLKSLVTLGPDRAG- 140
Query: 115 LPAFNNAAQAWNHDFFWXXXXXXXXXXXXX--XXXXLIERDFGSXXXXXXXXXXXXXTQF 172
FN A Q +NH+ +W LI +G+ F
Sbjct: 141 ENVFNAAGQIYNHNMYWLSMVPTSGSGRHVPPRLLKLIRARWGNVDEMKENFMRKATALF 200
Query: 173 GSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSVSSSLTC 228
GSGW WLV+ +++ L +V T +A +PL D TC
Sbjct: 201 GSGWIWLVWDT----------------RERRLDLVGTKDAHSPLSEDAGKIPLFTC 240
>pdb|1VAR|A Chain A, Mitochondrial Manganese Superoxide Dismutase Variant With
Ile 58 Replaced By Thr
pdb|1VAR|B Chain B, Mitochondrial Manganese Superoxide Dismutase Variant With
Ile 58 Replaced By Thr
Length = 198
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 51/127 (40%), Gaps = 7/127 (5%)
Query: 56 PYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLL 115
PY ALEPH++ ++ H KHH AYV+NLN + + + + DV + L
Sbjct: 8 PYDYGALEPHINAQIMQLHHSKHHAAYVNNLN--VTEEKYQEALAKGDVTAQT----ALQ 61
Query: 116 PAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGS 174
PA N NH FW I+RDFGS GS
Sbjct: 62 PALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGS 121
Query: 175 GWAWLVY 181
GW WL +
Sbjct: 122 GWGWLGF 128
>pdb|1JA8|A Chain A, Kinetic Analysis Of Product Inhibition In Human Manganese
Superoxide Dismutase
pdb|1JA8|B Chain B, Kinetic Analysis Of Product Inhibition In Human Manganese
Superoxide Dismutase
Length = 198
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 52/140 (37%), Gaps = 19/140 (13%)
Query: 49 KFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIAS 108
K L PY ALEPH++ ++ H KHH AYV+NLN E+ +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLN------------VTEEKYQEA 48
Query: 109 YNKGD------LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXX 161
KGD L PA N NH FW I+RDFGS
Sbjct: 49 LAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFK 108
Query: 162 XXXXXXXXTQFGSGWAWLVY 181
GSGW WL +
Sbjct: 109 EKLTAASVGVQGSGWGWLGF 128
>pdb|1MSD|A Chain A, Comparison Of The Crystal Structures Of Genetically
Engineered Human Manganese Superoxide Dismutase And
Manganese Superoxide Dismutase From Thermus
Thermophilus. Differences In Dimer-Dimer Interactions.
pdb|1MSD|B Chain B, Comparison Of The Crystal Structures Of Genetically
Engineered Human Manganese Superoxide Dismutase And
Manganese Superoxide Dismutase From Thermus
Thermophilus. Differences In Dimer-Dimer Interactions.
pdb|1LUV|A Chain A, Catalytic And Structural Effects Of Amino-acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
pdb|1LUV|B Chain B, Catalytic And Structural Effects Of Amino-acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
pdb|2ADQ|B Chain B, Human Manganese Superoxide Dismutase
Length = 198
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 52/140 (37%), Gaps = 19/140 (13%)
Query: 49 KFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIAS 108
K L PY ALEPH++ ++ H KHH AYV+NLN E+ +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLN------------VTEEKYQEA 48
Query: 109 YNKGD------LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXX 161
KGD L PA N NH FW I+RDFGS
Sbjct: 49 LAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFK 108
Query: 162 XXXXXXXXTQFGSGWAWLVY 181
GSGW WL +
Sbjct: 109 EKLTAASVGVQGSGWGWLGF 128
>pdb|2QKA|A Chain A, Structural And Kinetic Study Of The Differences Between
Human And E.Coli Manganese Superoxide Dismutases
pdb|2QKA|C Chain C, Structural And Kinetic Study Of The Differences Between
Human And E.Coli Manganese Superoxide Dismutases
Length = 196
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 52/140 (37%), Gaps = 19/140 (13%)
Query: 49 KFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIAS 108
K L PY ALEPH++ ++ H KHH AYV+NLN E+ +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLN------------VTEEKYQEA 48
Query: 109 YNKGD------LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXX 161
KGD L PA N NH FW I+RDFGS
Sbjct: 49 LAKGDVTAQIALQPALKANGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFK 108
Query: 162 XXXXXXXXTQFGSGWAWLVY 181
GSGW WL +
Sbjct: 109 EKLTAASVGVQGSGWGWLGF 128
>pdb|1N0J|A Chain A, The Structure Of Human Mitochondrial Mn3+ Superoxide
Dismutase Reveals A Novel Tetrameric Interface Of Two
4-Helix Bundles
pdb|1N0J|B Chain B, The Structure Of Human Mitochondrial Mn3+ Superoxide
Dismutase Reveals A Novel Tetrameric Interface Of Two
4-Helix Bundles
Length = 199
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 52/140 (37%), Gaps = 19/140 (13%)
Query: 49 KFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIAS 108
K L PY ALEPH++ ++ H KHH AYV+NLN E+ +
Sbjct: 2 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLN------------VTEEKYQEA 49
Query: 109 YNKGD------LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXX 161
KGD L PA N NH FW I+RDFGS
Sbjct: 50 LAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFK 109
Query: 162 XXXXXXXXTQFGSGWAWLVY 181
GSGW WL +
Sbjct: 110 EKLTAASVGVQGSGWGWLGF 129
>pdb|1PL4|A Chain A, Crystal Structure Of Human Mnsod Y166f Mutant
pdb|1PL4|B Chain B, Crystal Structure Of Human Mnsod Y166f Mutant
pdb|1PL4|C Chain C, Crystal Structure Of Human Mnsod Y166f Mutant
pdb|1PL4|D Chain D, Crystal Structure Of Human Mnsod Y166f Mutant
Length = 198
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 52/140 (37%), Gaps = 19/140 (13%)
Query: 49 KFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIAS 108
K L PY ALEPH++ ++ H KHH AYV+NLN E+ +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLN------------VTEEKYQEA 48
Query: 109 YNKGD------LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXX 161
KGD L PA N NH FW I+RDFGS
Sbjct: 49 LAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFK 108
Query: 162 XXXXXXXXTQFGSGWAWLVY 181
GSGW WL +
Sbjct: 109 EKLTAASVGVQGSGWGWLGF 128
>pdb|3C3T|A Chain A, Role Of A Glutamate Bridge Spanning The Dimeric Interface
Of Human Manganese Superoxide Dismutase
pdb|3C3T|B Chain B, Role Of A Glutamate Bridge Spanning The Dimeric Interface
Of Human Manganese Superoxide Dismutase
Length = 198
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 52/140 (37%), Gaps = 19/140 (13%)
Query: 49 KFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIAS 108
K L PY ALEPH++ ++ H KHH AYV+NLN E+ +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLN------------VTEEKYQEA 48
Query: 109 YNKGD------LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXX 161
KGD L PA N NH FW I+RDFGS
Sbjct: 49 LAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFK 108
Query: 162 XXXXXXXXTQFGSGWAWLVY 181
GSGW WL +
Sbjct: 109 EKLTAASVGVQGSGWGWLGF 128
>pdb|2QKC|A Chain A, Structural And Kinetic Study Of The Differences Between
Human And E.Coli Manganese Superoxide Dismutases
pdb|2QKC|C Chain C, Structural And Kinetic Study Of The Differences Between
Human And E.Coli Manganese Superoxide Dismutases
Length = 196
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 52/140 (37%), Gaps = 19/140 (13%)
Query: 49 KFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIAS 108
K L PY ALEPH++ ++ H KHH AYV+NLN E+ +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLN------------VTEEKYQEA 48
Query: 109 YNKGD------LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXX 161
KGD L PA N NH FW I+RDFGS
Sbjct: 49 LAKGDVTAQIALQPALKLNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFK 108
Query: 162 XXXXXXXXTQFGSGWAWLVY 181
GSGW WL +
Sbjct: 109 EKLTAASVGVQGSGWGWLGF 128
>pdb|3C3S|A Chain A, Role Of A Glutamate Bridge Spanning The Dimeric Interface
Of Human Manganese Superoxide Dismutase
pdb|3C3S|B Chain B, Role Of A Glutamate Bridge Spanning The Dimeric Interface
Of Human Manganese Superoxide Dismutase
Length = 198
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 52/140 (37%), Gaps = 19/140 (13%)
Query: 49 KFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIAS 108
K L PY ALEPH++ ++ H KHH AYV+NLN E+ +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLN------------VTEEKYQEA 48
Query: 109 YNKGD------LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXX 161
KGD L PA N NH FW I+RDFGS
Sbjct: 49 LAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFK 108
Query: 162 XXXXXXXXTQFGSGWAWLVY 181
GSGW WL +
Sbjct: 109 EKLTAASVGVQGSGWGWLGF 128
>pdb|1EM1|A Chain A, X-Ray Crystal Structure For Human Manganese Superoxide
Dismutase, Q143a
pdb|1EM1|B Chain B, X-Ray Crystal Structure For Human Manganese Superoxide
Dismutase, Q143a
Length = 198
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 52/140 (37%), Gaps = 19/140 (13%)
Query: 49 KFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIAS 108
K L PY ALEPH++ ++ H KHH AYV+NLN E+ +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLN------------VTEEKYQEA 48
Query: 109 YNKGD------LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXX 161
KGD L PA N NH FW I+RDFGS
Sbjct: 49 LAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFK 108
Query: 162 XXXXXXXXTQFGSGWAWLVY 181
GSGW WL +
Sbjct: 109 EKLTAASVGVQGSGWGWLGF 128
>pdb|1QNM|A Chain A, Human Manganese Superoxide Dismutase Mutant Q143n
pdb|1QNM|B Chain B, Human Manganese Superoxide Dismutase Mutant Q143n
Length = 198
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 52/140 (37%), Gaps = 19/140 (13%)
Query: 49 KFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIAS 108
K L PY ALEPH++ ++ H KHH AYV+NLN E+ +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLN------------VTEEKYQEA 48
Query: 109 YNKGD------LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXX 161
KGD L PA N NH FW I+RDFGS
Sbjct: 49 LAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFK 108
Query: 162 XXXXXXXXTQFGSGWAWLVY 181
GSGW WL +
Sbjct: 109 EKLTAASVGVQGSGWGWLGF 128
>pdb|1AP5|A Chain A, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
pdb|1AP5|B Chain B, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
pdb|1AP6|A Chain A, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
pdb|1AP6|B Chain B, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
Length = 198
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 52/140 (37%), Gaps = 19/140 (13%)
Query: 49 KFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIAS 108
K L PY ALEPH++ ++ H KHH A+V+NLN E+ +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAFVNNLN------------VTEEKYQEA 48
Query: 109 YNKGD------LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXX 161
KGD L PA N NH FW I+RDFGS
Sbjct: 49 LAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFK 108
Query: 162 XXXXXXXXTQFGSGWAWLVY 181
GSGW WL +
Sbjct: 109 EKLTAASVGVQGSGWGWLGF 128
>pdb|1ZTE|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Suerpoxide Dismutase
pdb|1ZTE|B Chain B, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Suerpoxide Dismutase
pdb|1ZTE|C Chain C, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Suerpoxide Dismutase
pdb|1ZTE|D Chain D, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Suerpoxide Dismutase
Length = 198
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 52/140 (37%), Gaps = 19/140 (13%)
Query: 49 KFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIAS 108
K L PY ALEPH++ ++ H KHH A+V+NLN E+ +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAHVNNLN------------VTEEKYQEA 48
Query: 109 YNKGD------LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXX 161
KGD L PA N NH FW I+RDFGS
Sbjct: 49 LAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFK 108
Query: 162 XXXXXXXXTQFGSGWAWLVY 181
GSGW WL +
Sbjct: 109 EKLTAASVGVQGSGWGWLGF 128
>pdb|1LUW|A Chain A, Catalytic And Structural Effects Of Amino-Acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
pdb|1LUW|B Chain B, Catalytic And Structural Effects Of Amino-Acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
Length = 198
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 51/140 (36%), Gaps = 19/140 (13%)
Query: 49 KFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIAS 108
K L PY ALEPH++ ++ H K H AYV+NLN E+ +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKQHAAYVNNLN------------VTEEKYQEA 48
Query: 109 YNKGD------LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXX 161
KGD L PA N NH FW I+RDFGS
Sbjct: 49 LAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFK 108
Query: 162 XXXXXXXXTQFGSGWAWLVY 181
GSGW WL +
Sbjct: 109 EKLTAASVGVQGSGWGWLGF 128
>pdb|2GDS|A Chain A, Interrupting The Hydrogen Bonding Network At The Active
Site Of Human Manganese Superoxide Dismutase
pdb|2GDS|B Chain B, Interrupting The Hydrogen Bonding Network At The Active
Site Of Human Manganese Superoxide Dismutase
pdb|2GDS|C Chain C, Interrupting The Hydrogen Bonding Network At The Active
Site Of Human Manganese Superoxide Dismutase
pdb|2GDS|D Chain D, Interrupting The Hydrogen Bonding Network At The Active
Site Of Human Manganese Superoxide Dismutase
Length = 198
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 52/140 (37%), Gaps = 19/140 (13%)
Query: 49 KFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIAS 108
K L PY ALEPH++ ++ H K+H AYV+NLN E+ +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKNHAAYVNNLN------------VTEEKYQEA 48
Query: 109 YNKGD------LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXX 161
KGD L PA N NH FW I+RDFGS
Sbjct: 49 LAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFK 108
Query: 162 XXXXXXXXTQFGSGWAWLVY 181
GSGW WL +
Sbjct: 109 EKLTAASVGVQGSGWGWLGF 128
>pdb|1PM9|A Chain A, Crystal Structure Of Human Mnsod H30n, Y166f Mutant
pdb|1PM9|B Chain B, Crystal Structure Of Human Mnsod H30n, Y166f Mutant
Length = 198
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 52/140 (37%), Gaps = 19/140 (13%)
Query: 49 KFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIAS 108
K L PY ALEPH++ ++ H K+H AYV+NLN E+ +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKNHAAYVNNLN------------VTEEKYQEA 48
Query: 109 YNKGD------LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXX 161
KGD L PA N NH FW I+RDFGS
Sbjct: 49 LAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFK 108
Query: 162 XXXXXXXXTQFGSGWAWLVY 181
GSGW WL +
Sbjct: 109 EKLTAASVGVQGSGWGWLGF 128
>pdb|1ZUQ|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
pdb|1ZUQ|B Chain B, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
Length = 198
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 51/140 (36%), Gaps = 19/140 (13%)
Query: 49 KFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIAS 108
K L PY ALEPH++ ++ H KHH A V+NLN E+ +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAVVNNLN------------VTEEKYQEA 48
Query: 109 YNKGD------LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXX 161
KGD L PA N NH FW I+RDFGS
Sbjct: 49 LAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFK 108
Query: 162 XXXXXXXXTQFGSGWAWLVY 181
GSGW WL +
Sbjct: 109 EKLTAASVGVQGSGWGWLGF 128
>pdb|2ADP|A Chain A, Nitrated Human Manganese Superoxide Dismutase
Length = 198
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 51/140 (36%), Gaps = 19/140 (13%)
Query: 49 KFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIAS 108
K L PY ALEPH++ ++ H KHH A V+NLN E+ +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAXVNNLN------------VTEEKYQEA 48
Query: 109 YNKGD------LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXX 161
KGD L PA N NH FW I+RDFGS
Sbjct: 49 LAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFK 108
Query: 162 XXXXXXXXTQFGSGWAWLVY 181
GSGW WL +
Sbjct: 109 EKLTAASVGVQGSGWGWLGF 128
>pdb|1KKC|A Chain A, Crystal Structure Of Aspergillus Fumigatus Mnsod
pdb|1KKC|B Chain B, Crystal Structure Of Aspergillus Fumigatus Mnsod
pdb|1KKC|X Chain X, Crystal Structure Of Aspergillus Fumigatus Mnsod
pdb|1KKC|Y Chain Y, Crystal Structure Of Aspergillus Fumigatus Mnsod
Length = 221
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 56/139 (40%), Gaps = 9/139 (6%)
Query: 46 ISAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV 105
+S ++ L P PYP +AL+P++S+ +E H KHH+ YV+ LN + + K+ E
Sbjct: 12 MSQQYTLPPLPYPYDALQPYISQQIMELHHKKHHQTYVNGLNAALEAQK----KAAEATD 67
Query: 106 IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXL----IERDFGSXXXXX 161
+ FN NH FW + IE+ +GS
Sbjct: 68 VPKLVSVQQAIKFNGGGHI-NHSLFWKNLAPEKSGGGKIDQAPVLKAAIEQRWGSFDKFK 126
Query: 162 XXXXXXXXTQFGSGWAWLV 180
GSGW WLV
Sbjct: 127 DAFNTTLLGIQGSGWGWLV 145
>pdb|1ZSP|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
pdb|1ZSP|B Chain B, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
Length = 198
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 51/140 (36%), Gaps = 19/140 (13%)
Query: 49 KFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIAS 108
K L PY ALEPH++ ++ H KHH A V+NLN E+ +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAAVNNLN------------VTEEKYQEA 48
Query: 109 YNKGD------LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXX 161
KGD L PA N NH FW I+RDFGS
Sbjct: 49 LAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFK 108
Query: 162 XXXXXXXXTQFGSGWAWLVY 181
GSGW WL +
Sbjct: 109 EKLTAASVGVQGSGWGWLGF 128
>pdb|1MA1|A Chain A, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
pdb|1MA1|B Chain B, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
pdb|1MA1|C Chain C, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
pdb|1MA1|D Chain D, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
pdb|1MA1|E Chain E, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
pdb|1MA1|F Chain F, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
Length = 205
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 58/135 (42%), Gaps = 9/135 (6%)
Query: 50 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGK-SLEDVVIAS 108
++L PYP +ALEPH+S++ L H KHH+AYVD N + +L + + S DV I
Sbjct: 9 YELPELPYPYDALEPHISREQLTIHHQKHHQAYVDGANALL--RKLDEARESDTDVDI-- 64
Query: 109 YNKGDLLPAFNNAAQAWNHDFFWXXX--XXXXXXXXXXXXXXLIERDFGSXXXXXXXXXX 166
K L + H FFW IE+DFGS
Sbjct: 65 --KAALKELSFHVGGYVLHLFFWGNMGPADECGGEPSGKLAEYIEKDFGSFERFRKEFSQ 122
Query: 167 XXXTQFGSGWAWLVY 181
+ GSGWA L Y
Sbjct: 123 AAISAEGSGWAVLTY 137
>pdb|1XIL|A Chain A, Hydrogen Bonding In Human Manganese Superoxide Dismutase
Containing 3- Fluorotyrosine
pdb|1XIL|B Chain B, Hydrogen Bonding In Human Manganese Superoxide Dismutase
Containing 3- Fluorotyrosine
Length = 198
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 51/140 (36%), Gaps = 19/140 (13%)
Query: 49 KFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIAS 108
K L P ALEPH++ ++ H KHH A+V+NLN E+ +
Sbjct: 1 KHSLPDLPXDXGALEPHINAQIMQLHHSKHHAAFVNNLN------------VTEEKXQEA 48
Query: 109 YNKGD------LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXX 161
KGD L PA N NH FW I+RDFGS
Sbjct: 49 LAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFK 108
Query: 162 XXXXXXXXTQFGSGWAWLVY 181
GSGW WL +
Sbjct: 109 EKLTAASVGVQGSGWGWLGF 128
>pdb|2P4K|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
pdb|2P4K|B Chain B, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
pdb|2P4K|C Chain C, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
pdb|2P4K|D Chain D, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
Length = 198
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 51/140 (36%), Gaps = 19/140 (13%)
Query: 49 KFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIAS 108
K L PY ALEPH++ ++ H KHH A V+NLN E+ +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAANVNNLN------------VTEEKYQEA 48
Query: 109 YNKGD------LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXX 161
KGD L PA N NH FW I+RDFGS
Sbjct: 49 LAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFK 108
Query: 162 XXXXXXXXTQFGSGWAWLVY 181
GSGW WL +
Sbjct: 109 EKLTAASVGVQGSGWGWLGF 128
>pdb|1N0N|A Chain A, Catalytic And Structural Effects Of Amino-Acid
Substitution At His30 In Human Manganese Superoxide
Dismutase
pdb|1N0N|B Chain B, Catalytic And Structural Effects Of Amino-Acid
Substitution At His30 In Human Manganese Superoxide
Dismutase
Length = 199
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 50/138 (36%), Gaps = 19/138 (13%)
Query: 49 KFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIAS 108
K L PY ALEPH++ ++ H K H AYV+NLN E+ +
Sbjct: 2 KHSLPDLPYDYGALEPHINAQIMQLHHSKVHAAYVNNLN------------VTEEKYQEA 49
Query: 109 YNKGD------LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXX 161
KGD L PA N NH FW I+RDFGS
Sbjct: 50 LAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFK 109
Query: 162 XXXXXXXXTQFGSGWAWL 179
GSGW WL
Sbjct: 110 EKLTAASVGVQGSGWGWL 127
>pdb|1SZX|A Chain A, Role Of Hydrogen Bonding In The Active Site Of Human
Manganese Superoxide Dismutase
pdb|1SZX|B Chain B, Role Of Hydrogen Bonding In The Active Site Of Human
Manganese Superoxide Dismutase
Length = 198
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 52/140 (37%), Gaps = 19/140 (13%)
Query: 49 KFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIAS 108
K L PY ALEPH++ ++ H KHH A+V+NLN E+ +
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAFVNNLN------------VTEEKYQEA 48
Query: 109 YNKGD------LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXX 161
KGD L PA N NH FW I+RDFGS
Sbjct: 49 LAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFK 108
Query: 162 XXXXXXXXTQFGSGWAWLVY 181
GSG+ WL +
Sbjct: 109 EKLTAASVGVQGSGFGWLGF 128
>pdb|1XDC|A Chain A, Hydrogen Bonding In Human Manganese Superoxide Dismutase
Containing 3- Fluorotyrosine
pdb|1XDC|B Chain B, Hydrogen Bonding In Human Manganese Superoxide Dismutase
Containing 3- Fluorotyrosine
Length = 198
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 50/140 (35%), Gaps = 19/140 (13%)
Query: 49 KFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIAS 108
K L P ALEPH++ ++ H KHH A V+NLN E+ +
Sbjct: 1 KHSLPDLPXDXGALEPHINAQIMQLHHSKHHAAXVNNLN------------VTEEKXQEA 48
Query: 109 YNKGD------LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXX 161
KGD L PA N NH FW I+RDFGS
Sbjct: 49 LAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFK 108
Query: 162 XXXXXXXXTQFGSGWAWLVY 181
GSGW WL +
Sbjct: 109 EKLTAASVGVQGSGWGWLGF 128
>pdb|1AR4|A Chain A, X-Ray Structure Analysis Of The Cambialistic Superoxide
Dismutase From Propionibacterium Shermanii Active With
Fe Or Mn
pdb|1AR4|B Chain B, X-Ray Structure Analysis Of The Cambialistic Superoxide
Dismutase From Propionibacterium Shermanii Active With
Fe Or Mn
pdb|1AR5|A Chain A, X-Ray Structure Of The Cambialistic Superoxide Dismutase
From Propionibacterium Shermanii Active With Fe Or Mn
pdb|1AR5|B Chain B, X-Ray Structure Of The Cambialistic Superoxide Dismutase
From Propionibacterium Shermanii Active With Fe Or Mn
pdb|1AVM|A Chain A, The Cambialistic Superoxide Dismutase (Fe-Sod) Of P.
Shermanii Coordinated By Azide
pdb|1AVM|B Chain B, The Cambialistic Superoxide Dismutase (Fe-Sod) Of P.
Shermanii Coordinated By Azide
pdb|1BS3|A Chain A, P.Shermanii Sod(Fe+3) Fluoride
pdb|1BS3|B Chain B, P.Shermanii Sod(Fe+3) Fluoride
pdb|1BSM|A Chain A, P.Shermanii Sod(Fe+3) 140k Ph8
pdb|1BSM|B Chain B, P.Shermanii Sod(Fe+3) 140k Ph8
pdb|1BT8|A Chain A, P.Shermanii Sod(Fe+3) Ph 10.0
pdb|1BT8|B Chain B, P.Shermanii Sod(Fe+3) Ph 10.0
Length = 201
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 57/136 (41%), Gaps = 7/136 (5%)
Query: 48 AKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIA 107
A + L PY +ALEP++S + +E H KHH+AYVD N + +L + + D
Sbjct: 1 AVYTLPELPYDYSALEPYISGEIMELHHDKHHKAYVDGANTAL--DKLAEARDKAD--FG 56
Query: 108 SYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXX--XXXXXXLIERDFGSXXXXXXXXX 165
+ NK + AFN A NH FW I+ FGS
Sbjct: 57 AINKLEKDLAFNLAGHV-NHSVFWKNMAPKGSAPERPTDELGAAIDEFFGSFDNMKAQFT 115
Query: 166 XXXXTQFGSGWAWLVY 181
GSGWA LV+
Sbjct: 116 AAATGIQGSGWASLVW 131
>pdb|3DC6|A Chain A, Crystal Structure Of A Manganese Superoxide Dismutases
From Caenorhabditis Elegans
pdb|3DC6|C Chain C, Crystal Structure Of A Manganese Superoxide Dismutases
From Caenorhabditis Elegans
Length = 198
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 53/140 (37%), Gaps = 20/140 (14%)
Query: 49 KFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIAS 108
K L PY LEP +S + ++ H KHH YV+NLN+ +E+ + +
Sbjct: 2 KHSLPDLPYDYADLEPVISHEIMQLHHQKHHATYVNNLNQ------------IEEKLHEA 49
Query: 109 YNKGD------LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXX 161
+KG+ L PA N NH FW I+ DFGS
Sbjct: 50 VSKGNVKEAIALQPALKFNGGGHINHSIFWTNLAKDGGEPSAELLTA-IKSDFGSLDNLQ 108
Query: 162 XXXXXXXXTQFGSGWAWLVY 181
GSGW WL Y
Sbjct: 109 KQLSASTVAVQGSGWGWLGY 128
>pdb|1WB8|A Chain A, Iron Superoxide Dismutase (Fe-Sod) From The
Hyperthermophile Sulfolobus Solfataricus. 2.3 A
Resolution Structure Of Recombinant Protein With A
Covalently Modified Tyrosin In The Active Site.
pdb|1WB8|B Chain B, Iron Superoxide Dismutase (Fe-Sod) From The
Hyperthermophile Sulfolobus Solfataricus. 2.3 A
Resolution Structure Of Recombinant Protein With A
Covalently Modified Tyrosin In The Active Site
Length = 210
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 13/66 (19%)
Query: 49 KFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIAS 108
K++L P PY ++ALEP++SKD ++ H+ HH+ YV+ N + + LE VV
Sbjct: 8 KYELPPLPYKIDALEPYISKDIIDVHYNGHHKGYVNGANSLL--------ERLEKVV--- 56
Query: 109 YNKGDL 114
KGDL
Sbjct: 57 --KGDL 60
>pdb|3DC5|A Chain A, Crystal Structure Of A Manganese Superoxide Dismutases
From Caenorhabditis Elegans
pdb|3DC5|C Chain C, Crystal Structure Of A Manganese Superoxide Dismutases
From Caenorhabditis Elegans
Length = 195
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 53/140 (37%), Gaps = 20/140 (14%)
Query: 49 KFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIAS 108
K L P+ LEP +S + ++ H KHH YV+NLN+ +E+ + +
Sbjct: 2 KHTLPDLPFDYADLEPVISHEIMQLHHQKHHATYVNNLNQ------------IEEKLHEA 49
Query: 109 YNKGDLLPAFN-------NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXX 161
+KG+L A N NH FW I+RDFGS
Sbjct: 50 VSKGNLKEAIALQPALKFNGGGHINHSIFWTNLAKDGGEPSKELMDT-IKRDFGSLDNLQ 108
Query: 162 XXXXXXXXTQFGSGWAWLVY 181
GSGW WL Y
Sbjct: 109 KRLSDITIAVQGSGWGWLGY 128
>pdb|1WB7|A Chain A, Iron Superoxide Dismutase (Fe-Sod) From The
Hyperthermophile Sulfolobus Solfataricus. Crystal
Structure Of The Y41f Mutant.
pdb|1WB7|B Chain B, Iron Superoxide Dismutase (Fe-Sod) From The
Hyperthermophile Sulfolobus Solfataricus. Crystal
Structure Of The Y41f Mutant
Length = 210
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 13/66 (19%)
Query: 49 KFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIAS 108
K++L P PY ++ALEP++SKD ++ H+ HH+ +V+ N + + LE VV
Sbjct: 8 KYELPPLPYKIDALEPYISKDIIDVHYNGHHKGFVNGANSLL--------ERLEKVV--- 56
Query: 109 YNKGDL 114
KGDL
Sbjct: 57 --KGDL 60
>pdb|3EVK|A Chain A, Crystal Structure Of The Metal-Bound Superoxide Dismutase
From Pyrobaculum Aerophilum
pdb|3EVK|B Chain B, Crystal Structure Of The Metal-Bound Superoxide Dismutase
From Pyrobaculum Aerophilum
pdb|3EVK|C Chain C, Crystal Structure Of The Metal-Bound Superoxide Dismutase
From Pyrobaculum Aerophilum
pdb|3EVK|D Chain D, Crystal Structure Of The Metal-Bound Superoxide Dismutase
From Pyrobaculum Aerophilum
Length = 222
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 58/148 (39%), Gaps = 19/148 (12%)
Query: 43 GGRISAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTE-LGDGKSL 101
G + ++ L P PY NALEP++S + ++ H KHH+ YV+ N + E G++
Sbjct: 11 GSVTTKRYTLPPLPYAYNALEPYISAEIMQLHHQKHHQGYVNGANAALEKLEKFRKGEAQ 70
Query: 102 EDVV-----IASYNKGDLLPAFNNAAQAWNHDFFW--XXXXXXXXXXXXXXXXXLIERDF 154
D+ ++ + G +L H FW LI + F
Sbjct: 71 IDIRAVLRDLSFHLNGHIL-----------HSIFWPNMAPPGKGGGKPGGKIADLINKFF 119
Query: 155 GSXXXXXXXXXXXXXTQFGSGWAWLVYK 182
GS G GWA LVY+
Sbjct: 120 GSFEKFKEEFSQAAKNVEGVGWAILVYE 147
>pdb|1IDS|A Chain A, X-Ray Structure Analysis Of The Iron-Dependent Superoxide
Dismutase From Mycobacterium Tuberculosis At 2.0
Angstroms Resolutions Reveals Novel Dimer-Dimer
Interactions
pdb|1IDS|B Chain B, X-Ray Structure Analysis Of The Iron-Dependent Superoxide
Dismutase From Mycobacterium Tuberculosis At 2.0
Angstroms Resolutions Reveals Novel Dimer-Dimer
Interactions
pdb|1IDS|C Chain C, X-Ray Structure Analysis Of The Iron-Dependent Superoxide
Dismutase From Mycobacterium Tuberculosis At 2.0
Angstroms Resolutions Reveals Novel Dimer-Dimer
Interactions
pdb|1IDS|D Chain D, X-Ray Structure Analysis Of The Iron-Dependent Superoxide
Dismutase From Mycobacterium Tuberculosis At 2.0
Angstroms Resolutions Reveals Novel Dimer-Dimer
Interactions
Length = 207
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 51/132 (38%), Gaps = 5/132 (3%)
Query: 48 AKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIA 107
A++ L + ALEPH+S E H KHH YV N + +L + ++ ED
Sbjct: 2 AEYTLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAV--AKLEEARAKEDHSAI 59
Query: 108 SYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXX 167
N+ +L AFN A NH +W I FGS
Sbjct: 60 LLNEKNL--AFNLAGHV-NHTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHAA 116
Query: 168 XXTQFGSGWAWL 179
T GSGWA L
Sbjct: 117 ATTVQGSGWAAL 128
>pdb|1GN3|A Chain A, H145q Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN3|B Chain B, H145q Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase
Length = 207
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 51/132 (38%), Gaps = 5/132 (3%)
Query: 48 AKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIA 107
A++ L + ALEPH+S E H KHH YV N + +L + ++ ED
Sbjct: 2 AEYTLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAV--AKLEEARAKEDHSAI 59
Query: 108 SYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXX 167
N+ +L AFN A NH +W I FGS
Sbjct: 60 LLNEKNL--AFNLAGHV-NHTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHAA 116
Query: 168 XXTQFGSGWAWL 179
T GSGWA L
Sbjct: 117 ATTVQGSGWAAL 128
>pdb|1GN4|A Chain A, H145e Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN4|B Chain B, H145e Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN4|C Chain C, H145e Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN4|D Chain D, H145e Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase
Length = 207
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 51/132 (38%), Gaps = 5/132 (3%)
Query: 48 AKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIA 107
A++ L + ALEPH+S E H KHH YV N + +L + ++ ED
Sbjct: 2 AEYTLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAV--AKLEEARAKEDHSAI 59
Query: 108 SYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXX 167
N+ +L AFN A NH +W I FGS
Sbjct: 60 LLNEKNL--AFNLAGHV-NHTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHAA 116
Query: 168 XXTQFGSGWAWL 179
T GSGWA L
Sbjct: 117 ATTVQGSGWAAL 128
>pdb|1GN6|A Chain A, G152a Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN6|B Chain B, G152a Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN6|C Chain C, G152a Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN6|D Chain D, G152a Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase
Length = 207
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 51/132 (38%), Gaps = 5/132 (3%)
Query: 48 AKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIA 107
A++ L + ALEPH+S E H KHH YV N + +L + ++ ED
Sbjct: 2 AEYTLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAV--AKLEEARAKEDHSAI 59
Query: 108 SYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXX 167
N+ +L AFN A NH +W I FGS
Sbjct: 60 LLNEKNL--AFNLAGHV-NHTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHAA 116
Query: 168 XXTQFGSGWAWL 179
T GSGWA L
Sbjct: 117 ATTVQGSGWAAL 128
>pdb|3AK1|A Chain A, Superoxide Dismutase From Aeropyrum Pernix K1, Apo-Form
pdb|3AK1|B Chain B, Superoxide Dismutase From Aeropyrum Pernix K1, Apo-Form
pdb|3AK1|C Chain C, Superoxide Dismutase From Aeropyrum Pernix K1, Apo-Form
pdb|3AK1|D Chain D, Superoxide Dismutase From Aeropyrum Pernix K1, Apo-Form
pdb|3AK2|A Chain A, Superoxide Dismutase From Aeropyrum Pernix K1, Mn-Bound
Form
pdb|3AK2|B Chain B, Superoxide Dismutase From Aeropyrum Pernix K1, Mn-Bound
Form
pdb|3AK2|C Chain C, Superoxide Dismutase From Aeropyrum Pernix K1, Mn-Bound
Form
pdb|3AK2|D Chain D, Superoxide Dismutase From Aeropyrum Pernix K1, Mn-Bound
Form
pdb|3AK3|A Chain A, Superoxide Dismutase From Aeropyrum Pernix K1, Fe-Bound
Form
pdb|3AK3|B Chain B, Superoxide Dismutase From Aeropyrum Pernix K1, Fe-Bound
Form
pdb|3AK3|C Chain C, Superoxide Dismutase From Aeropyrum Pernix K1, Fe-Bound
Form
pdb|3AK3|D Chain D, Superoxide Dismutase From Aeropyrum Pernix K1, Fe-Bound
Form
Length = 214
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 50/135 (37%), Gaps = 7/135 (5%)
Query: 49 KFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIAS 108
+++L P PY NALEP++ ++ ++ H KHH YV N + E ++ V A
Sbjct: 6 RYELPPLPYNYNALEPYIIEEIMKLHHQKHHNTYVKGANAALEKIEKHLKGEIQIDVRAV 65
Query: 109 YNKGDLLPAFNNAAQAWNHDFFW--XXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXX 166
+FN A H FW LIE+ FG
Sbjct: 66 MRDF----SFNYAGHIM-HTIFWPNMAPPGKGGGTPGGRVADLIEKQFGGFEKFKALFSA 120
Query: 167 XXXTQFGSGWAWLVY 181
T G GW L +
Sbjct: 121 AAKTVEGVGWGVLAF 135
>pdb|4FFK|A Chain A, X-Ray Structure Of Iron Superoxide Dismutase From
Acidilobus Saccharovorans
Length = 223
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 49 KFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIAS 108
+++L P PY +ALEP +S +TL +H KHH YV+ N + E L D+ + +
Sbjct: 18 RYELPPLPYNYDALEPIISAETLRYHHDKHHLGYVNGANAALDKLEKYLNGQLTDIDVRA 77
Query: 109 YNK 111
++
Sbjct: 78 VSR 80
>pdb|1GN2|A Chain A, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|B Chain B, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|C Chain C, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|D Chain D, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|E Chain E, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|F Chain F, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|G Chain G, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|H Chain H, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis
Length = 207
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 50/132 (37%), Gaps = 5/132 (3%)
Query: 48 AKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIA 107
A++ L + ALEPH+S E H KHH YV N + +L + ++ ED
Sbjct: 2 AEYTLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAV--AKLEEARAKEDHSAI 59
Query: 108 SYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXX 167
N+ +L AFN A NH +W I FGS
Sbjct: 60 LLNEKNL--AFNLAGHV-NHTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHAA 116
Query: 168 XXTQFGSGWAWL 179
T G GWA L
Sbjct: 117 ATTVQGCGWAAL 128
>pdb|1B06|A Chain A, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|B Chain B, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|C Chain C, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|D Chain D, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|E Chain E, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|F Chain F, Superoxide Dismutase From Sulfolobus Acidocaldarius
Length = 210
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 27/39 (69%)
Query: 49 KFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLN 87
+++ PY ++ALEP++SKD ++ H+ HH+ YV+ N
Sbjct: 8 RYEFPQLPYKVDALEPYISKDIIDVHYNGHHKGYVNGAN 46
>pdb|3QVN|A Chain A, Crystal Structure Of Cytosolic Mnsod3 From Candida
Albicans
Length = 206
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 49 KFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGK-SLEDVVIA 107
K L + L+ALEP++SK+ + H KHH AYV+ N I E GK L+ VV
Sbjct: 7 KISLPKIDWALDALEPYISKEINDLHINKHHVAYVNGYNAAIDALEKAVGKRDLKSVVEI 66
Query: 108 SYNKGDLLPAFNNAAQAWNHDFFW 131
N F+ NH FW
Sbjct: 67 QQN-----IKFHGGGHT-NHSLFW 84
>pdb|3RN4|A Chain A, Crystal Structure Of Iron-Substituted Sod2 From
Saccharomyces Cerevisiae
Length = 215
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 48/132 (36%), Gaps = 15/132 (11%)
Query: 59 LNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVI---ASYNKGDLL 115
ALEP++S E H+ KHH+ YV+ N T + + L D++ + N ++
Sbjct: 19 FGALEPYISGQINELHYTKHHQTYVNGFN-----TAVDQFQELSDLLAKEPSPANARKMI 73
Query: 116 PAFNN----AAQAWNHDFFWXXXXXXXXXXXXXXXXXL---IERDFGSXXXXXXXXXXXX 168
N NH FW L I+ FGS
Sbjct: 74 AIQQNIKFHGGGFTNHCLFWENLAPESQGGGEPPTGALAKAIDEQFGSLDELIKLTNTKL 133
Query: 169 XTQFGSGWAWLV 180
GSGWA++V
Sbjct: 134 AGVQGSGWAFIV 145
>pdb|3BFR|A Chain A, The Crystal Structure Of Sod2 From Saccharomyces
Cerevisiae
Length = 215
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 48/132 (36%), Gaps = 15/132 (11%)
Query: 59 LNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVI---ASYNKGDLL 115
ALEP++S E H+ KHH+ YV+ N T + + L D++ + N ++
Sbjct: 19 FGALEPYISGQINELHYTKHHQTYVNGFN-----TAVDQFQELSDLLAKEPSPANARKMI 73
Query: 116 PAFNN----AAQAWNHDFFWXXXXXXXXXXXXXXXXXL---IERDFGSXXXXXXXXXXXX 168
N NH FW L I+ FGS
Sbjct: 74 AIQQNIKFHGGGFTNHCLFWENLAPESQGGGEPPTGALAKAIDEQFGSLDELIKLTNTKL 133
Query: 169 XTQFGSGWAWLV 180
GSGWA++V
Sbjct: 134 AGVQGSGWAFIV 145
>pdb|3LSU|A Chain A, Crystal Structure Of Sod2 From Saccharomyces Cerevisiae
pdb|3LSU|B Chain B, Crystal Structure Of Sod2 From Saccharomyces Cerevisiae
pdb|3LSU|C Chain C, Crystal Structure Of Sod2 From Saccharomyces Cerevisiae
pdb|3LSU|D Chain D, Crystal Structure Of Sod2 From Saccharomyces Cerevisiae
Length = 207
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 59 LNALEPHMSKDTLEFHWGKHHRAYVDNLNKQI 90
ALEP++S E H+ HH+ YV+ N +
Sbjct: 11 FGALEPYISGQINELHYTXHHQTYVNGFNTAV 42
>pdb|1P7G|A Chain A, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|B Chain B, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|C Chain C, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|D Chain D, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|E Chain E, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|F Chain F, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|G Chain G, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|H Chain H, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|I Chain I, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|J Chain J, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|K Chain K, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|L Chain L, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|M Chain M, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|N Chain N, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|O Chain O, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|P Chain P, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|Q Chain Q, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|R Chain R, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|S Chain S, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|T Chain T, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|U Chain U, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|V Chain V, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|W Chain W, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|X Chain X, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
Length = 222
Score = 31.2 bits (69), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 58/148 (39%), Gaps = 19/148 (12%)
Query: 43 GGRISAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTE-LGDGKSL 101
G + ++ L P PY NALEP++S + + H KHH+ YV+ N + E G++
Sbjct: 11 GSVTTKRYTLPPLPYAYNALEPYISAEIXQLHHQKHHQGYVNGANAALEKLEKFRKGEAQ 70
Query: 102 EDVV-----IASYNKGDLLPAFNNAAQAWNHDFFW--XXXXXXXXXXXXXXXXXLIERDF 154
D+ ++ + G +L H FW LI + F
Sbjct: 71 IDIRAVLRDLSFHLNGHIL-----------HSIFWPNXAPPGKGGGKPGGKIADLINKFF 119
Query: 155 GSXXXXXXXXXXXXXTQFGSGWAWLVYK 182
GS G GWA LVY+
Sbjct: 120 GSFEKFKEEFSQAAKNVEGVGWAILVYE 147
>pdb|4E4E|A Chain A, Crystal Structure Of The Y34f Mutant Of Saccharomyces
Cerevisiae Manganese Superoxide Dismutase
pdb|4E4E|B Chain B, Crystal Structure Of The Y34f Mutant Of Saccharomyces
Cerevisiae Manganese Superoxide Dismutase
pdb|4E4E|C Chain C, Crystal Structure Of The Y34f Mutant Of Saccharomyces
Cerevisiae Manganese Superoxide Dismutase
pdb|4E4E|D Chain D, Crystal Structure Of The Y34f Mutant Of Saccharomyces
Cerevisiae Manganese Superoxide Dismutase
Length = 207
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 59 LNALEPHMSKDTLEFHWGKHHRAYVDNLNKQI 90
ALEP++S E H+ HH+ +V+ N +
Sbjct: 11 FGALEPYISGQINELHYTXHHQTFVNGFNTAV 42
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,144,090
Number of Sequences: 62578
Number of extensions: 218911
Number of successful extensions: 551
Number of sequences better than 100.0: 87
Number of HSP's better than 100.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 367
Number of HSP's gapped (non-prelim): 87
length of query: 228
length of database: 14,973,337
effective HSP length: 95
effective length of query: 133
effective length of database: 9,028,427
effective search space: 1200780791
effective search space used: 1200780791
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)